Query 000447
Match_columns 1497
No_of_seqs 779 out of 6669
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:03:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-79 4.2E-84 777.2 43.6 627 5-671 11-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.4E-59 5.2E-64 631.2 57.5 688 137-982 182-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.7E-39 1.7E-43 371.9 19.9 273 144-420 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 6.4E-30 1.4E-34 347.8 29.8 528 489-1212 70-603 (968)
5 PLN00113 leucine-rich repeat r 100.0 8.4E-30 1.8E-34 346.6 28.5 510 486-1192 91-607 (968)
6 KOG0618 Serine/threonine phosp 99.8 5E-22 1.1E-26 237.5 -4.2 142 494-638 4-147 (1081)
7 PLN03210 Resistant to P. syrin 99.8 2.7E-19 5.8E-24 243.0 21.5 301 911-1303 610-910 (1153)
8 KOG4194 Membrane glycoprotein 99.8 2.1E-20 4.5E-25 211.9 8.6 153 509-674 77-232 (873)
9 KOG4194 Membrane glycoprotein 99.8 3.1E-19 6.7E-24 202.5 6.7 349 487-982 77-431 (873)
10 KOG0618 Serine/threonine phosp 99.8 1.8E-20 4E-25 224.3 -4.4 166 490-676 23-191 (1081)
11 KOG0472 Leucine-rich repeat pr 99.8 1.8E-21 3.9E-26 211.5 -12.1 174 490-679 47-222 (565)
12 KOG0444 Cytoskeletal regulator 99.8 1.9E-20 4.1E-25 212.6 -5.5 367 510-1016 7-380 (1255)
13 KOG0472 Leucine-rich repeat pr 99.7 3.4E-21 7.4E-26 209.4 -12.6 156 510-681 45-201 (565)
14 KOG0444 Cytoskeletal regulator 99.7 4.8E-19 1E-23 201.3 -3.2 196 486-693 53-253 (1255)
15 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.8E-20 147.3 -4.6 166 501-682 24-192 (264)
16 KOG0617 Ras suppressor protein 99.4 4.1E-15 9E-20 143.9 -4.5 152 486-641 31-186 (264)
17 PRK04841 transcriptional regul 99.3 1.2E-10 2.7E-15 158.3 22.9 294 137-467 12-332 (903)
18 PRK15387 E3 ubiquitin-protein 99.2 6.1E-11 1.3E-15 149.3 15.9 156 491-680 204-359 (788)
19 PRK15370 E3 ubiquitin-protein 99.2 2.3E-11 5E-16 154.4 11.9 138 489-641 179-317 (754)
20 KOG4237 Extracellular matrix p 99.2 7.8E-13 1.7E-17 145.1 -2.1 135 524-673 59-198 (498)
21 COG2909 MalT ATP-dependent tra 99.2 5.9E-10 1.3E-14 135.4 21.6 294 138-469 18-340 (894)
22 KOG4658 Apoptotic ATPase [Sign 99.2 2.4E-11 5.2E-16 156.6 9.2 129 532-674 520-653 (889)
23 KOG4341 F-box protein containi 99.1 1.4E-12 3.1E-17 144.6 -5.6 117 913-1037 139-255 (483)
24 PRK15370 E3 ubiquitin-protein 99.1 2.2E-10 4.8E-15 145.5 13.2 173 477-679 189-362 (754)
25 PRK15387 E3 ubiquitin-protein 99.1 7.1E-10 1.5E-14 139.8 16.5 245 477-794 212-456 (788)
26 PRK00411 cdc6 cell division co 99.0 2.4E-08 5.3E-13 121.6 25.7 203 137-340 28-257 (394)
27 TIGR03015 pepcterm_ATPase puta 99.0 2.5E-08 5.3E-13 114.7 23.7 183 157-342 40-242 (269)
28 KOG4341 F-box protein containi 99.0 1E-11 2.3E-16 137.8 -5.1 198 808-1037 162-359 (483)
29 KOG4237 Extracellular matrix p 98.9 9.2E-11 2E-15 129.1 -1.4 120 475-596 55-180 (498)
30 PF01637 Arch_ATPase: Archaeal 98.9 3.2E-09 6.9E-14 119.5 10.3 194 141-337 1-233 (234)
31 PF05729 NACHT: NACHT domain 98.9 5.9E-09 1.3E-13 110.2 11.5 143 161-308 1-163 (166)
32 KOG0532 Leucine-rich repeat (L 98.9 1.6E-10 3.6E-15 132.8 -2.9 186 490-693 77-265 (722)
33 PF14580 LRR_9: Leucine-rich r 98.8 3.4E-09 7.4E-14 109.8 6.0 106 533-640 17-125 (175)
34 KOG1259 Nischarin, modulator o 98.8 6.8E-10 1.5E-14 117.5 -0.1 136 533-681 282-417 (490)
35 PF14580 LRR_9: Leucine-rich r 98.8 4E-09 8.8E-14 109.3 4.7 81 558-640 19-100 (175)
36 TIGR02928 orc1/cdc6 family rep 98.8 5.8E-07 1.3E-11 108.4 23.4 198 138-335 14-243 (365)
37 cd00116 LRR_RI Leucine-rich re 98.7 7.6E-09 1.6E-13 122.6 2.4 108 531-640 77-205 (319)
38 PRK00080 ruvB Holliday junctio 98.7 4.3E-07 9.4E-12 106.9 17.1 276 135-447 21-310 (328)
39 cd00116 LRR_RI Leucine-rich re 98.6 1.8E-08 4E-13 119.2 5.0 177 490-676 53-263 (319)
40 KOG0532 Leucine-rich repeat (L 98.6 2.2E-09 4.9E-14 123.7 -4.5 172 493-682 55-230 (722)
41 COG2256 MGS1 ATPase related to 98.6 6.4E-07 1.4E-11 100.7 14.2 253 137-419 22-301 (436)
42 PTZ00112 origin recognition co 98.6 3E-06 6.6E-11 104.3 20.7 205 138-343 754-987 (1164)
43 KOG1259 Nischarin, modulator o 98.5 9.8E-09 2.1E-13 108.9 -1.4 125 487-614 283-410 (490)
44 PRK13342 recombination factor 98.5 1E-06 2.2E-11 107.0 15.0 180 136-341 9-199 (413)
45 TIGR00635 ruvB Holliday juncti 98.5 1.8E-06 4E-11 101.1 16.7 189 138-340 3-203 (305)
46 PTZ00202 tuzin; Provisional 98.5 1.2E-05 2.5E-10 92.3 21.9 166 134-308 257-434 (550)
47 PRK06893 DNA replication initi 98.5 1.3E-06 2.9E-11 96.8 13.1 151 159-338 38-203 (229)
48 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.1E-12 113.9 5.6 173 489-678 117-292 (394)
49 COG1474 CDC6 Cdc6-related prot 98.4 3.1E-05 6.8E-10 90.9 21.7 200 139-339 17-239 (366)
50 PRK07003 DNA polymerase III su 98.4 6.4E-06 1.4E-10 101.5 16.3 181 135-337 12-220 (830)
51 PF13173 AAA_14: AAA domain 98.3 8.2E-07 1.8E-11 88.8 6.8 120 160-299 2-126 (128)
52 PRK12402 replication factor C 98.3 7.8E-06 1.7E-10 97.5 16.2 197 137-337 13-225 (337)
53 PRK14961 DNA polymerase III su 98.3 1.4E-05 3E-10 95.2 18.1 193 136-336 13-218 (363)
54 TIGR02903 spore_lon_C ATP-depe 98.3 6.8E-05 1.5E-09 94.9 24.1 172 137-309 152-367 (615)
55 PRK14949 DNA polymerase III su 98.3 8.3E-06 1.8E-10 102.7 15.3 185 136-338 13-220 (944)
56 PF13401 AAA_22: AAA domain; P 98.3 2.4E-06 5.2E-11 86.2 8.9 116 159-276 3-125 (131)
57 PRK12323 DNA polymerase III su 98.3 9.8E-06 2.1E-10 98.7 15.1 200 135-337 12-224 (700)
58 COG4886 Leucine-rich repeat (L 98.3 7.1E-07 1.5E-11 108.9 5.5 167 508-690 114-282 (394)
59 PRK14960 DNA polymerase III su 98.3 1.4E-05 2.9E-10 97.8 16.0 194 135-336 11-217 (702)
60 PRK05564 DNA polymerase III su 98.2 2.2E-05 4.7E-10 92.0 17.1 176 139-336 4-188 (313)
61 TIGR03420 DnaA_homol_Hda DnaA 98.2 7.4E-06 1.6E-10 91.4 12.6 168 143-339 21-202 (226)
62 KOG3207 Beta-tubulin folding c 98.2 2.1E-07 4.5E-12 104.9 0.1 214 1069-1293 118-333 (505)
63 PLN03025 replication factor C 98.2 1E-05 2.2E-10 94.8 14.3 183 135-333 9-195 (319)
64 PRK06645 DNA polymerase III su 98.2 2.2E-05 4.8E-10 95.8 17.2 196 135-335 17-226 (507)
65 PRK14963 DNA polymerase III su 98.2 2.6E-05 5.7E-10 95.7 17.9 191 136-335 11-214 (504)
66 KOG2028 ATPase related to the 98.2 1.5E-05 3.4E-10 87.5 12.9 134 153-308 155-294 (554)
67 PRK14956 DNA polymerase III su 98.2 1.4E-05 3.1E-10 95.2 13.5 192 135-334 14-218 (484)
68 cd00009 AAA The AAA+ (ATPases 98.2 1.3E-05 2.7E-10 82.7 11.7 122 143-278 2-131 (151)
69 PRK00440 rfc replication facto 98.2 3.9E-05 8.5E-10 90.7 17.3 183 136-336 14-201 (319)
70 PRK14962 DNA polymerase III su 98.2 2.9E-05 6.3E-10 94.5 16.2 189 135-341 10-222 (472)
71 PRK04195 replication factor C 98.2 7.5E-05 1.6E-09 92.6 20.2 185 135-342 10-206 (482)
72 KOG3207 Beta-tubulin folding c 98.1 4E-07 8.8E-12 102.6 -0.9 186 487-678 120-316 (505)
73 PRK14957 DNA polymerase III su 98.1 4.6E-05 1E-09 93.6 16.7 185 136-338 13-221 (546)
74 PLN03150 hypothetical protein; 98.1 6.5E-06 1.4E-10 105.1 9.1 105 536-641 419-528 (623)
75 PRK14964 DNA polymerase III su 98.1 5.5E-05 1.2E-09 91.5 16.3 181 136-334 10-213 (491)
76 PRK13341 recombination factor 98.1 1.8E-05 3.8E-10 100.8 12.7 172 136-333 25-212 (725)
77 TIGR00678 holB DNA polymerase 98.1 7.3E-05 1.6E-09 80.5 15.4 159 150-333 3-186 (188)
78 cd01128 rho_factor Transcripti 98.1 5.8E-06 1.3E-10 91.6 6.9 92 159-251 15-115 (249)
79 PF05496 RuvB_N: Holliday junc 98.1 6.5E-05 1.4E-09 79.6 14.2 172 135-336 20-219 (233)
80 PRK14951 DNA polymerase III su 98.1 7E-05 1.5E-09 93.2 16.9 196 136-336 13-223 (618)
81 PRK09376 rho transcription ter 98.1 9.3E-06 2E-10 93.2 8.4 100 151-251 159-268 (416)
82 PRK08691 DNA polymerase III su 98.1 4.3E-05 9.3E-10 94.6 14.6 179 135-335 12-217 (709)
83 PRK14955 DNA polymerase III su 98.1 4.3E-05 9.2E-10 92.2 14.5 201 135-336 12-226 (397)
84 PRK15386 type III secretion pr 98.0 8.2E-06 1.8E-10 94.8 7.8 158 1098-1299 52-213 (426)
85 PRK05896 DNA polymerase III su 98.0 6.4E-05 1.4E-09 92.2 15.8 197 135-339 12-222 (605)
86 PLN03150 hypothetical protein; 98.0 7.9E-06 1.7E-10 104.3 8.3 104 559-674 419-526 (623)
87 COG3903 Predicted ATPase [Gene 98.0 1.6E-05 3.4E-10 90.7 9.2 287 159-469 13-316 (414)
88 PRK09112 DNA polymerase III su 98.0 0.00011 2.3E-09 86.2 16.5 199 134-338 18-240 (351)
89 PF13855 LRR_8: Leucine rich r 98.0 4.1E-06 8.9E-11 71.3 3.5 58 581-639 2-60 (61)
90 TIGR02397 dnaX_nterm DNA polym 98.0 0.00016 3.5E-09 86.8 18.6 184 136-338 11-218 (355)
91 PRK07471 DNA polymerase III su 98.0 0.00016 3.4E-09 85.4 17.8 196 135-338 15-238 (365)
92 PRK07940 DNA polymerase III su 98.0 0.00013 2.7E-09 86.9 16.9 172 138-337 4-212 (394)
93 PF13855 LRR_8: Leucine rich r 98.0 5.6E-06 1.2E-10 70.5 4.0 14 537-550 3-16 (61)
94 PRK08727 hypothetical protein; 98.0 6.3E-05 1.4E-09 83.6 13.4 160 147-335 28-201 (233)
95 PRK07994 DNA polymerase III su 98.0 7.3E-05 1.6E-09 93.2 15.0 196 135-338 12-220 (647)
96 PRK14958 DNA polymerase III su 98.0 7.5E-05 1.6E-09 92.0 14.9 183 135-335 12-217 (509)
97 PF13191 AAA_16: AAA ATPase do 98.0 2E-05 4.3E-10 84.9 8.6 48 140-187 1-51 (185)
98 TIGR01242 26Sp45 26S proteasom 98.0 0.00012 2.5E-09 87.7 15.6 177 134-332 117-328 (364)
99 COG3899 Predicted ATPase [Gene 97.9 0.00025 5.4E-09 93.0 19.8 258 141-408 2-329 (849)
100 PRK15386 type III secretion pr 97.9 1.3E-05 2.8E-10 93.2 6.8 140 1118-1297 48-188 (426)
101 PRK14969 DNA polymerase III su 97.9 0.00013 2.8E-09 90.6 16.0 176 136-333 13-215 (527)
102 PRK14959 DNA polymerase III su 97.9 0.00013 2.9E-09 90.0 15.4 199 136-342 13-225 (624)
103 PRK07764 DNA polymerase III su 97.9 0.00029 6.2E-09 91.1 18.8 192 136-335 12-218 (824)
104 KOG2227 Pre-initiation complex 97.9 0.0005 1.1E-08 79.3 18.3 204 137-340 148-374 (529)
105 PRK14971 DNA polymerase III su 97.9 0.00026 5.6E-09 89.3 17.7 181 136-335 14-219 (614)
106 PRK08084 DNA replication initi 97.9 0.00014 3E-09 81.1 13.7 163 146-337 31-208 (235)
107 PRK09111 DNA polymerase III su 97.9 0.0002 4.4E-09 89.5 16.6 198 135-337 20-232 (598)
108 PRK14954 DNA polymerase III su 97.9 0.00018 3.9E-09 90.1 15.9 198 135-333 12-223 (620)
109 PRK09087 hypothetical protein; 97.9 0.00014 3.1E-09 80.0 13.5 141 159-337 43-194 (226)
110 KOG2120 SCF ubiquitin ligase, 97.8 9.7E-07 2.1E-11 94.4 -4.2 184 1073-1297 186-374 (419)
111 PRK08451 DNA polymerase III su 97.8 0.00036 7.9E-09 85.3 17.1 185 136-338 11-218 (535)
112 KOG0989 Replication factor C, 97.8 0.00012 2.6E-09 79.8 11.3 185 135-332 32-224 (346)
113 PRK07133 DNA polymerase III su 97.8 0.00044 9.5E-09 86.9 17.7 179 135-335 14-216 (725)
114 TIGR00767 rho transcription te 97.8 6.6E-05 1.4E-09 86.9 9.7 92 159-251 167-267 (415)
115 PRK14970 DNA polymerase III su 97.8 0.00043 9.2E-09 83.3 17.3 180 136-333 14-204 (367)
116 PF14516 AAA_35: AAA-like doma 97.8 0.0012 2.6E-08 77.5 19.8 201 137-345 9-246 (331)
117 PRK06305 DNA polymerase III su 97.8 0.00049 1.1E-08 83.9 17.0 179 136-333 14-217 (451)
118 PRK14952 DNA polymerase III su 97.8 0.00053 1.1E-08 85.3 16.9 200 135-342 9-224 (584)
119 PF05621 TniB: Bacterial TniB 97.7 0.00043 9.4E-09 77.1 14.3 189 145-333 43-256 (302)
120 TIGR02639 ClpA ATP-dependent C 97.7 0.00029 6.3E-09 91.9 15.2 159 136-308 179-358 (731)
121 KOG2120 SCF ubiquitin ligase, 97.7 3.9E-06 8.4E-11 89.9 -1.7 57 581-638 186-244 (419)
122 KOG1859 Leucine-rich repeat pr 97.7 4.9E-07 1.1E-11 107.2 -9.3 177 487-679 108-295 (1096)
123 PRK14950 DNA polymerase III su 97.7 0.0007 1.5E-08 85.8 18.0 195 136-337 13-220 (585)
124 PRK03992 proteasome-activating 97.7 0.00031 6.8E-09 84.3 13.9 176 135-332 127-337 (389)
125 PRK14953 DNA polymerase III su 97.7 0.0011 2.3E-08 81.4 18.7 180 136-337 13-219 (486)
126 PHA02544 44 clamp loader, smal 97.7 0.00027 5.9E-09 83.2 13.0 149 135-306 17-171 (316)
127 KOG1859 Leucine-rich repeat pr 97.7 3.4E-06 7.4E-11 100.3 -3.4 102 559-676 165-267 (1096)
128 PRK14948 DNA polymerase III su 97.7 0.00099 2.1E-08 84.1 18.1 197 136-338 13-222 (620)
129 KOG0531 Protein phosphatase 1, 97.7 5.5E-06 1.2E-10 101.1 -2.2 105 532-639 92-197 (414)
130 KOG0531 Protein phosphatase 1, 97.6 6.6E-06 1.4E-10 100.4 -1.9 100 537-640 74-174 (414)
131 PF00308 Bac_DnaA: Bacterial d 97.6 0.00028 6.1E-09 77.4 11.0 159 160-335 34-205 (219)
132 PRK11331 5-methylcytosine-spec 97.6 0.00017 3.6E-09 85.1 9.5 108 139-251 175-284 (459)
133 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00041 8.9E-09 91.0 14.2 159 135-308 183-363 (852)
134 PRK08903 DnaA regulatory inact 97.6 0.0005 1.1E-08 76.6 13.0 164 147-342 28-203 (227)
135 PRK14087 dnaA chromosomal repl 97.6 0.001 2.2E-08 81.2 16.4 165 161-340 142-321 (450)
136 PRK06647 DNA polymerase III su 97.6 0.0011 2.5E-08 82.5 17.2 194 135-336 12-218 (563)
137 TIGR02881 spore_V_K stage V sp 97.6 0.00037 8E-09 79.2 12.0 135 159-309 41-192 (261)
138 PF12799 LRR_4: Leucine Rich r 97.6 5.2E-05 1.1E-09 59.0 3.4 38 536-573 2-39 (44)
139 TIGR03689 pup_AAA proteasome A 97.6 0.0012 2.5E-08 80.6 16.7 163 135-310 178-380 (512)
140 PRK05563 DNA polymerase III su 97.6 0.0015 3.3E-08 81.8 18.1 193 135-335 12-217 (559)
141 CHL00095 clpC Clp protease ATP 97.6 0.00054 1.2E-08 90.5 14.3 157 138-307 178-353 (821)
142 PRK05642 DNA replication initi 97.6 0.00096 2.1E-08 74.2 14.1 149 161-337 46-207 (234)
143 PF12799 LRR_4: Leucine Rich r 97.6 9.2E-05 2E-09 57.6 4.0 39 581-620 2-40 (44)
144 CHL00181 cbbX CbbX; Provisiona 97.5 0.0019 4.2E-08 73.9 16.1 133 161-309 60-210 (287)
145 PRK07399 DNA polymerase III su 97.5 0.002 4.3E-08 74.6 16.3 195 139-337 4-220 (314)
146 TIGR02880 cbbX_cfxQ probable R 97.5 0.0019 4.1E-08 74.0 16.0 132 162-309 60-209 (284)
147 KOG1947 Leucine rich repeat pr 97.5 8.7E-06 1.9E-10 102.6 -3.7 95 939-1037 187-282 (482)
148 COG2255 RuvB Holliday junction 97.5 0.0093 2E-07 64.8 19.4 172 135-335 22-220 (332)
149 KOG3665 ZYG-1-like serine/thre 97.5 6.2E-05 1.3E-09 95.6 3.4 82 532-613 145-230 (699)
150 TIGR00362 DnaA chromosomal rep 97.5 0.0026 5.6E-08 77.5 17.3 156 161-334 137-306 (405)
151 PRK14965 DNA polymerase III su 97.4 0.0012 2.7E-08 83.1 13.8 196 135-338 12-221 (576)
152 KOG3665 ZYG-1-like serine/thre 97.4 5.8E-05 1.3E-09 95.8 1.5 125 488-613 122-260 (699)
153 PTZ00454 26S protease regulato 97.4 0.0034 7.5E-08 75.0 16.4 175 134-332 140-351 (398)
154 TIGR00602 rad24 checkpoint pro 97.4 0.00089 1.9E-08 83.8 11.5 51 135-185 80-135 (637)
155 COG1373 Predicted ATPase (AAA+ 97.4 0.0046 9.9E-08 74.3 17.1 136 143-302 21-161 (398)
156 PRK05707 DNA polymerase III su 97.3 0.0052 1.1E-07 71.6 16.9 167 160-338 22-203 (328)
157 KOG2543 Origin recognition com 97.3 0.0013 2.9E-08 73.9 10.7 163 139-307 6-192 (438)
158 PRK11034 clpA ATP-dependent Cl 97.3 0.00068 1.5E-08 87.1 9.7 158 138-308 185-362 (758)
159 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0026 5.7E-08 84.4 15.5 157 137-308 171-349 (852)
160 PRK10865 protein disaggregatio 97.3 0.0019 4.2E-08 85.2 13.7 158 136-308 175-354 (857)
161 PRK00149 dnaA chromosomal repl 97.3 0.0033 7.1E-08 77.6 15.0 157 160-334 148-318 (450)
162 PRK14088 dnaA chromosomal repl 97.3 0.0032 6.9E-08 76.8 14.6 156 161-333 131-300 (440)
163 KOG1947 Leucine rich repeat pr 97.2 5.9E-05 1.3E-09 95.1 -0.6 38 1097-1134 268-308 (482)
164 PTZ00361 26 proteosome regulat 97.2 0.0019 4.2E-08 77.6 12.0 173 136-332 180-389 (438)
165 KOG2982 Uncharacterized conser 97.2 0.00012 2.5E-09 78.9 1.4 44 808-852 222-265 (418)
166 PRK10536 hypothetical protein; 97.2 0.0025 5.4E-08 69.8 11.5 57 137-195 53-109 (262)
167 PRK14086 dnaA chromosomal repl 97.2 0.0059 1.3E-07 75.4 15.9 154 161-332 315-482 (617)
168 KOG2982 Uncharacterized conser 97.2 0.00019 4.1E-09 77.3 2.7 202 1097-1315 70-284 (418)
169 CHL00176 ftsH cell division pr 97.2 0.0047 1E-07 78.1 15.4 171 139-331 183-387 (638)
170 smart00382 AAA ATPases associa 97.2 0.00097 2.1E-08 67.9 7.9 90 161-253 3-92 (148)
171 PF00004 AAA: ATPase family as 97.2 0.0012 2.7E-08 66.3 8.4 69 163-251 1-70 (132)
172 PRK06620 hypothetical protein; 97.2 0.0015 3.3E-08 71.3 9.5 133 161-333 45-184 (214)
173 KOG1909 Ran GTPase-activating 97.1 0.00012 2.6E-09 81.1 0.2 179 489-675 93-310 (382)
174 TIGR00763 lon ATP-dependent pr 97.1 0.012 2.6E-07 77.4 18.7 47 139-185 320-372 (775)
175 TIGR01241 FtsH_fam ATP-depende 97.1 0.0042 9.2E-08 77.6 13.8 176 135-332 51-260 (495)
176 PRK08769 DNA polymerase III su 97.1 0.013 2.9E-07 67.5 16.6 174 146-338 11-208 (319)
177 COG1222 RPT1 ATP-dependent 26S 97.1 0.013 2.9E-07 65.8 15.6 187 133-343 145-372 (406)
178 KOG1909 Ran GTPase-activating 97.1 9.7E-05 2.1E-09 81.8 -0.9 109 533-641 90-226 (382)
179 PRK10787 DNA-binding ATP-depen 97.0 0.004 8.7E-08 80.9 12.1 159 138-308 321-506 (784)
180 PRK08058 DNA polymerase III su 97.0 0.013 2.8E-07 68.8 15.3 160 141-307 7-181 (329)
181 KOG2035 Replication factor C, 97.0 0.021 4.5E-07 61.7 15.0 229 139-382 13-282 (351)
182 KOG0741 AAA+-type ATPase [Post 97.0 0.015 3.2E-07 68.0 15.0 149 158-328 536-704 (744)
183 KOG0743 AAA+-type ATPase [Post 97.0 0.11 2.4E-06 60.8 22.1 85 270-358 341-432 (457)
184 KOG4579 Leucine-rich repeat (L 97.0 7.3E-05 1.6E-09 71.4 -2.8 63 576-640 49-112 (177)
185 PRK06090 DNA polymerase III su 96.9 0.046 9.9E-07 63.1 18.9 175 147-338 11-201 (319)
186 PF13177 DNA_pol3_delta2: DNA 96.9 0.0086 1.9E-07 62.4 11.9 137 143-296 1-162 (162)
187 PRK12422 chromosomal replicati 96.9 0.0097 2.1E-07 72.4 14.0 152 161-331 142-306 (445)
188 PRK06871 DNA polymerase III su 96.9 0.026 5.6E-07 65.3 16.7 176 147-335 10-200 (325)
189 KOG0731 AAA+-type ATPase conta 96.9 0.013 2.8E-07 73.3 15.0 175 139-334 311-520 (774)
190 KOG0733 Nuclear AAA ATPase (VC 96.9 0.017 3.7E-07 68.8 14.9 96 136-251 187-294 (802)
191 COG3267 ExeA Type II secretory 96.8 0.036 7.8E-07 59.8 15.8 179 157-340 48-247 (269)
192 CHL00195 ycf46 Ycf46; Provisio 96.8 0.023 5E-07 69.6 16.4 176 137-332 226-429 (489)
193 KOG0730 AAA+-type ATPase [Post 96.8 0.034 7.5E-07 67.5 17.2 158 133-310 428-617 (693)
194 PF05673 DUF815: Protein of un 96.8 0.078 1.7E-06 57.7 18.3 123 134-282 22-156 (249)
195 COG0466 Lon ATP-dependent Lon 96.8 0.016 3.5E-07 70.9 14.5 156 139-308 323-508 (782)
196 PRK08118 topology modulation p 96.8 0.00068 1.5E-08 71.0 2.7 35 161-195 2-37 (167)
197 PRK12608 transcription termina 96.8 0.0082 1.8E-07 69.6 11.6 103 148-251 120-232 (380)
198 KOG1644 U2-associated snRNP A' 96.8 0.002 4.4E-08 66.2 5.7 98 511-611 43-148 (233)
199 PRK10865 protein disaggregatio 96.8 0.055 1.2E-06 71.7 20.4 46 139-184 568-622 (857)
200 PF10443 RNA12: RNA12 protein; 96.7 0.046 1E-06 64.0 17.0 194 144-347 1-287 (431)
201 COG0593 DnaA ATPase involved i 96.7 0.026 5.7E-07 66.4 15.1 133 159-309 112-258 (408)
202 TIGR03345 VI_ClpV1 type VI sec 96.7 0.011 2.4E-07 77.8 13.4 46 139-184 566-620 (852)
203 COG1223 Predicted ATPase (AAA+ 96.7 0.023 5E-07 60.6 12.8 170 138-331 120-318 (368)
204 COG2812 DnaX DNA polymerase II 96.7 0.01 2.2E-07 71.9 11.7 190 135-332 12-214 (515)
205 TIGR02639 ClpA ATP-dependent C 96.6 0.014 3.1E-07 76.4 13.6 103 139-251 454-565 (731)
206 PRK08116 hypothetical protein; 96.6 0.0043 9.3E-08 70.3 7.7 102 161-277 115-221 (268)
207 KOG4579 Leucine-rich repeat (L 96.6 0.00017 3.7E-09 69.0 -3.3 88 534-622 52-141 (177)
208 PRK12727 flagellar biosynthesi 96.6 0.067 1.5E-06 64.8 17.3 88 160-249 350-438 (559)
209 KOG1644 U2-associated snRNP A' 96.6 0.0035 7.7E-08 64.5 5.7 103 560-673 44-150 (233)
210 TIGR01243 CDC48 AAA family ATP 96.5 0.029 6.3E-07 73.8 15.6 174 137-332 451-657 (733)
211 PF02562 PhoH: PhoH-like prote 96.5 0.0046 1E-07 66.0 6.6 128 144-277 5-156 (205)
212 PRK08939 primosomal protein Dn 96.5 0.045 9.7E-07 63.2 15.1 115 143-275 135-259 (306)
213 TIGR02640 gas_vesic_GvpN gas v 96.5 0.068 1.5E-06 60.7 16.3 56 146-208 9-64 (262)
214 KOG0991 Replication factor C, 96.5 0.0057 1.2E-07 63.9 6.7 103 135-251 23-125 (333)
215 PRK06964 DNA polymerase III su 96.5 0.09 2E-06 61.4 17.3 104 226-338 115-225 (342)
216 PRK07993 DNA polymerase III su 96.5 0.061 1.3E-06 62.9 16.0 177 147-336 10-202 (334)
217 PRK07261 topology modulation p 96.4 0.0072 1.6E-07 63.7 7.3 35 162-196 2-37 (171)
218 COG0542 clpA ATP-binding subun 96.4 0.073 1.6E-06 67.4 16.6 46 139-184 491-545 (786)
219 PF00448 SRP54: SRP54-type pro 96.4 0.016 3.4E-07 62.3 9.5 86 161-248 2-92 (196)
220 PHA00729 NTP-binding motif con 96.3 0.019 4.1E-07 62.1 9.7 35 150-184 7-41 (226)
221 KOG1514 Origin recognition com 96.3 0.11 2.5E-06 63.5 17.1 199 138-339 395-622 (767)
222 PRK08181 transposase; Validate 96.3 0.0058 1.3E-07 68.8 6.1 105 153-277 101-209 (269)
223 TIGR01243 CDC48 AAA family ATP 96.2 0.035 7.6E-07 73.0 13.8 175 137-333 176-382 (733)
224 PF04665 Pox_A32: Poxvirus A32 96.2 0.0088 1.9E-07 65.4 6.7 35 162-198 15-49 (241)
225 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0063 1.4E-07 70.3 5.5 46 140-185 52-103 (361)
226 PRK06526 transposase; Provisio 96.1 0.0073 1.6E-07 67.7 5.8 74 160-251 98-171 (254)
227 KOG2004 Mitochondrial ATP-depe 96.1 0.046 1E-06 66.6 12.5 100 138-251 410-517 (906)
228 TIGR02237 recomb_radB DNA repa 96.1 0.02 4.3E-07 62.8 9.0 49 159-210 11-59 (209)
229 PF01695 IstB_IS21: IstB-like 96.1 0.0042 9.1E-08 65.7 3.4 75 159-251 46-120 (178)
230 TIGR02902 spore_lonB ATP-depen 96.0 0.023 4.9E-07 71.2 9.9 48 137-184 63-110 (531)
231 COG1875 NYN ribonuclease and A 96.0 0.038 8.3E-07 62.3 10.3 55 140-194 225-280 (436)
232 PRK12377 putative replication 96.0 0.029 6.4E-07 62.4 9.6 76 159-251 100-175 (248)
233 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.021 4.5E-07 64.1 8.5 91 159-250 18-126 (235)
234 TIGR01425 SRP54_euk signal rec 96.0 0.3 6.4E-06 58.6 18.3 38 159-198 99-136 (429)
235 PRK04132 replication factor C 96.0 0.11 2.3E-06 67.4 15.6 154 167-337 571-730 (846)
236 KOG0734 AAA+-type ATPase conta 95.9 0.023 5E-07 66.6 8.6 91 141-251 309-408 (752)
237 COG0470 HolB ATPase involved i 95.9 0.056 1.2E-06 64.0 12.5 138 141-294 3-167 (325)
238 TIGR03499 FlhF flagellar biosy 95.9 0.053 1.2E-06 62.1 11.7 88 159-248 193-281 (282)
239 PRK06921 hypothetical protein; 95.9 0.015 3.2E-07 65.9 6.8 71 159-248 116-186 (266)
240 KOG2123 Uncharacterized conser 95.9 0.00052 1.1E-08 73.4 -4.5 106 557-670 18-124 (388)
241 PRK00771 signal recognition pa 95.9 0.29 6.2E-06 59.2 18.0 87 159-249 94-185 (437)
242 COG1484 DnaC DNA replication p 95.8 0.038 8.3E-07 62.0 9.6 82 151-251 98-179 (254)
243 TIGR03346 chaperone_ClpB ATP-d 95.8 0.03 6.5E-07 74.5 10.3 106 139-251 565-679 (852)
244 PF13207 AAA_17: AAA domain; P 95.8 0.0076 1.6E-07 59.5 3.6 23 162-184 1-23 (121)
245 PRK14722 flhF flagellar biosyn 95.8 0.032 6.9E-07 65.6 9.2 90 160-251 137-227 (374)
246 PRK11034 clpA ATP-dependent Cl 95.8 0.024 5.2E-07 73.2 8.8 103 139-251 458-569 (758)
247 CHL00095 clpC Clp protease ATP 95.8 0.035 7.7E-07 73.6 10.6 46 139-184 509-563 (821)
248 KOG0736 Peroxisome assembly fa 95.8 0.29 6.2E-06 60.6 16.9 97 135-251 668-776 (953)
249 KOG0739 AAA+-type ATPase [Post 95.7 0.15 3.2E-06 55.7 13.0 171 139-331 133-334 (439)
250 KOG2739 Leucine-rich acidic nu 95.7 0.0054 1.2E-07 66.2 2.0 82 557-641 42-129 (260)
251 PRK11889 flhF flagellar biosyn 95.6 0.082 1.8E-06 61.6 11.2 90 159-250 240-331 (436)
252 TIGR02012 tigrfam_recA protein 95.6 0.046 1E-06 62.9 9.3 85 159-250 54-144 (321)
253 PRK08699 DNA polymerase III su 95.6 0.19 4.2E-06 58.6 14.6 154 160-334 21-202 (325)
254 PF03215 Rad17: Rad17 cell cyc 95.6 0.065 1.4E-06 66.2 11.1 55 140-198 20-79 (519)
255 PF08423 Rad51: Rad51; InterP 95.5 0.081 1.8E-06 59.6 11.0 89 161-250 39-144 (256)
256 PRK09183 transposase/IS protei 95.5 0.016 3.4E-07 65.4 5.3 25 161-185 103-127 (259)
257 COG2884 FtsE Predicted ATPase 95.5 0.043 9.4E-07 56.3 7.7 120 159-282 27-202 (223)
258 KOG1969 DNA replication checkp 95.5 0.023 5E-07 69.4 6.7 75 159-251 325-399 (877)
259 PRK10867 signal recognition pa 95.5 0.64 1.4E-05 56.1 18.8 27 159-185 99-125 (433)
260 PRK07952 DNA replication prote 95.5 0.074 1.6E-06 59.1 10.1 90 146-251 83-174 (244)
261 KOG0733 Nuclear AAA ATPase (VC 95.5 0.12 2.7E-06 61.9 12.2 151 160-332 545-718 (802)
262 PRK06696 uridine kinase; Valid 95.4 0.022 4.7E-07 63.1 5.8 43 143-185 2-47 (223)
263 PRK06835 DNA replication prote 95.4 0.022 4.7E-07 66.3 5.9 100 161-276 184-288 (329)
264 COG5238 RNA1 Ran GTPase-activa 95.4 0.0068 1.5E-07 64.9 1.4 14 806-819 299-312 (388)
265 KOG2739 Leucine-rich acidic nu 95.3 0.0074 1.6E-07 65.1 1.7 56 579-634 90-149 (260)
266 KOG0727 26S proteasome regulat 95.3 0.48 1E-05 50.5 14.6 94 138-251 154-260 (408)
267 cd01393 recA_like RecA is a b 95.3 0.059 1.3E-06 60.0 9.0 51 159-209 18-72 (226)
268 cd00983 recA RecA is a bacter 95.3 0.064 1.4E-06 61.8 9.2 84 159-249 54-143 (325)
269 PF07693 KAP_NTPase: KAP famil 95.3 0.67 1.5E-05 54.8 18.4 43 145-187 2-47 (325)
270 PRK09270 nucleoside triphospha 95.3 0.095 2.1E-06 58.3 10.3 29 158-186 31-59 (229)
271 TIGR02238 recomb_DMC1 meiotic 95.2 0.059 1.3E-06 62.4 8.8 59 159-218 95-157 (313)
272 PRK09354 recA recombinase A; P 95.2 0.072 1.6E-06 61.8 9.3 85 159-250 59-149 (349)
273 COG0464 SpoVK ATPases of the A 95.2 0.18 3.9E-06 63.3 13.6 132 159-310 275-425 (494)
274 cd01133 F1-ATPase_beta F1 ATP 95.2 0.12 2.7E-06 57.7 10.6 89 161-251 70-175 (274)
275 PRK12723 flagellar biosynthesi 95.1 0.13 2.8E-06 61.2 11.3 90 159-250 173-265 (388)
276 PRK09361 radB DNA repair and r 95.1 0.069 1.5E-06 59.4 8.7 47 159-208 22-68 (225)
277 cd01120 RecA-like_NTPases RecA 95.1 0.1 2.2E-06 54.5 9.5 40 162-203 1-40 (165)
278 PLN03187 meiotic recombination 95.1 0.078 1.7E-06 61.8 9.1 59 159-218 125-187 (344)
279 PTZ00494 tuzin-like protein; P 95.0 1.5 3.2E-05 51.3 18.6 166 135-308 367-544 (664)
280 PRK10733 hflB ATP-dependent me 95.0 0.18 3.9E-06 64.8 13.1 149 161-331 186-356 (644)
281 KOG0744 AAA+-type ATPase [Post 95.0 0.044 9.5E-07 60.5 6.2 28 160-187 177-204 (423)
282 PRK07132 DNA polymerase III su 95.0 0.54 1.2E-05 54.0 15.4 166 149-337 6-184 (299)
283 PRK15455 PrkA family serine pr 95.0 0.026 5.7E-07 68.4 4.8 48 138-185 75-128 (644)
284 PRK04296 thymidine kinase; Pro 95.0 0.038 8.3E-07 59.3 5.8 110 161-278 3-117 (190)
285 KOG0735 AAA+-type ATPase [Post 94.8 0.24 5.2E-06 60.6 12.1 153 160-331 431-608 (952)
286 COG0542 clpA ATP-binding subun 94.8 0.13 2.8E-06 65.2 10.5 160 137-308 168-346 (786)
287 TIGR02858 spore_III_AA stage I 94.8 0.16 3.5E-06 57.4 10.3 127 149-281 99-233 (270)
288 PRK12724 flagellar biosynthesi 94.7 0.1 2.2E-06 61.8 8.8 84 160-247 223-307 (432)
289 PRK14974 cell division protein 94.7 0.19 4E-06 58.6 10.9 91 159-251 139-234 (336)
290 COG1618 Predicted nucleotide k 94.7 0.04 8.6E-07 55.0 4.5 30 161-191 6-35 (179)
291 COG0541 Ffh Signal recognition 94.7 1.5 3.3E-05 51.5 17.8 58 159-218 99-157 (451)
292 PRK05541 adenylylsulfate kinas 94.7 0.066 1.4E-06 56.9 6.7 36 159-196 6-41 (176)
293 PRK12726 flagellar biosynthesi 94.6 0.16 3.5E-06 59.0 10.0 90 159-250 205-296 (407)
294 COG1419 FlhF Flagellar GTP-bin 94.6 0.23 5E-06 58.0 11.1 101 148-250 187-292 (407)
295 TIGR00959 ffh signal recogniti 94.6 0.3 6.5E-06 58.9 12.6 90 159-249 98-192 (428)
296 COG2607 Predicted ATPase (AAA+ 94.6 0.19 4.1E-06 53.6 9.4 120 136-281 57-188 (287)
297 PRK08533 flagellar accessory p 94.6 0.15 3.3E-06 56.5 9.5 52 160-216 24-75 (230)
298 TIGR02236 recomb_radA DNA repa 94.5 0.15 3.2E-06 59.8 9.7 58 159-217 94-155 (310)
299 PRK05703 flhF flagellar biosyn 94.5 0.19 4.1E-06 61.0 10.6 87 160-248 221-308 (424)
300 PLN03186 DNA repair protein RA 94.4 0.11 2.5E-06 60.6 8.4 59 159-218 122-184 (342)
301 TIGR02239 recomb_RAD51 DNA rep 94.4 0.14 3E-06 59.6 9.0 58 159-217 95-156 (316)
302 cd03115 SRP The signal recogni 94.4 0.12 2.7E-06 54.6 8.1 25 162-186 2-26 (173)
303 KOG0729 26S proteasome regulat 94.4 0.18 3.9E-06 53.9 8.9 49 137-185 175-236 (435)
304 PRK04301 radA DNA repair and r 94.4 0.16 3.5E-06 59.5 9.7 58 159-217 101-162 (317)
305 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.22 4.7E-06 55.7 10.3 49 159-211 20-68 (237)
306 TIGR00064 ftsY signal recognit 94.2 0.26 5.6E-06 56.1 10.5 90 158-249 70-164 (272)
307 COG0468 RecA RecA/RadA recombi 94.2 0.23 4.9E-06 55.9 9.8 90 159-250 59-152 (279)
308 cd01121 Sms Sms (bacterial rad 94.2 0.14 3.1E-06 60.7 8.6 87 159-250 81-169 (372)
309 TIGR00554 panK_bact pantothena 94.2 0.22 4.8E-06 56.7 9.8 28 158-185 60-87 (290)
310 PRK06547 hypothetical protein; 94.2 0.065 1.4E-06 56.3 5.1 34 151-184 6-39 (172)
311 PTZ00035 Rad51 protein; Provis 94.2 0.21 4.5E-06 58.6 9.8 58 159-217 117-178 (337)
312 KOG2228 Origin recognition com 94.1 0.41 8.9E-06 53.7 11.2 166 140-308 25-219 (408)
313 TIGR01359 UMP_CMP_kin_fam UMP- 94.1 0.12 2.6E-06 55.3 7.3 23 162-184 1-23 (183)
314 KOG2123 Uncharacterized conser 94.1 0.0034 7.3E-08 67.4 -4.5 79 556-634 39-123 (388)
315 PRK14723 flhF flagellar biosyn 94.1 0.3 6.6E-06 62.4 11.6 88 160-249 185-273 (767)
316 cd02025 PanK Pantothenate kina 94.1 0.21 4.4E-06 55.0 9.0 24 162-185 1-24 (220)
317 PLN00020 ribulose bisphosphate 94.0 0.16 3.4E-06 58.5 8.1 28 158-185 146-173 (413)
318 PF00006 ATP-synt_ab: ATP synt 93.9 0.17 3.6E-06 55.0 7.9 86 161-250 16-116 (215)
319 PF13306 LRR_5: Leucine rich r 93.9 0.12 2.7E-06 51.4 6.5 55 509-566 11-66 (129)
320 PF06309 Torsin: Torsin; Inte 93.9 0.4 8.7E-06 46.6 9.4 45 140-184 26-77 (127)
321 PF13238 AAA_18: AAA domain; P 93.8 0.047 1E-06 54.5 3.2 22 163-184 1-22 (129)
322 cd01394 radB RadB. The archaea 93.8 0.21 4.6E-06 55.1 8.7 43 159-203 18-60 (218)
323 PRK07667 uridine kinase; Provi 93.8 0.087 1.9E-06 56.8 5.4 37 149-185 4-42 (193)
324 PRK14721 flhF flagellar biosyn 93.8 0.3 6.5E-06 58.5 10.2 87 160-248 191-278 (420)
325 PRK04328 hypothetical protein; 93.8 0.25 5.4E-06 55.6 9.2 41 159-201 22-62 (249)
326 PRK06995 flhF flagellar biosyn 93.7 0.24 5.2E-06 60.3 9.5 88 160-249 256-344 (484)
327 PF07728 AAA_5: AAA domain (dy 93.7 0.13 2.8E-06 52.2 6.3 76 163-251 2-77 (139)
328 PRK05917 DNA polymerase III su 93.7 1.1 2.5E-05 50.7 14.1 129 147-295 5-154 (290)
329 KOG0728 26S proteasome regulat 93.6 0.91 2E-05 48.4 12.1 146 143-308 151-331 (404)
330 COG0563 Adk Adenylate kinase a 93.6 0.11 2.4E-06 54.8 5.6 24 162-185 2-25 (178)
331 PF03308 ArgK: ArgK protein; 93.6 0.12 2.5E-06 56.6 5.9 57 147-203 14-72 (266)
332 PF13306 LRR_5: Leucine rich r 93.6 0.19 4.2E-06 50.0 7.3 106 526-637 3-112 (129)
333 PF00560 LRR_1: Leucine Rich R 93.6 0.029 6.3E-07 36.3 0.8 21 581-601 1-21 (22)
334 cd03281 ABC_MSH5_euk MutS5 hom 93.6 0.081 1.8E-06 57.9 4.8 24 160-183 29-52 (213)
335 PRK13531 regulatory ATPase Rav 93.6 0.1 2.3E-06 62.7 5.9 50 140-191 21-70 (498)
336 KOG0738 AAA+-type ATPase [Post 93.6 0.91 2E-05 52.0 12.7 26 160-185 245-270 (491)
337 PF13481 AAA_25: AAA domain; P 93.5 0.33 7E-06 52.5 9.4 42 161-202 33-82 (193)
338 cd02019 NK Nucleoside/nucleoti 93.5 0.06 1.3E-06 46.9 2.9 23 162-184 1-23 (69)
339 COG4088 Predicted nucleotide k 93.5 0.044 9.6E-07 56.7 2.3 25 161-185 2-26 (261)
340 cd01131 PilT Pilus retraction 93.5 0.14 3.1E-06 55.4 6.5 109 161-281 2-113 (198)
341 PRK05439 pantothenate kinase; 93.5 0.43 9.4E-06 54.8 10.5 28 158-185 84-111 (311)
342 PRK10463 hydrogenase nickel in 93.4 0.22 4.7E-06 56.3 7.8 97 148-250 92-195 (290)
343 PRK06851 hypothetical protein; 93.3 0.6 1.3E-05 54.8 11.5 41 158-199 212-252 (367)
344 PF00485 PRK: Phosphoribulokin 93.2 0.076 1.7E-06 57.4 3.9 24 162-185 1-24 (194)
345 cd03214 ABC_Iron-Siderophores_ 93.2 0.34 7.3E-06 51.6 8.7 117 159-280 24-161 (180)
346 COG1428 Deoxynucleoside kinase 93.2 0.07 1.5E-06 56.2 3.2 26 160-185 4-29 (216)
347 PF13671 AAA_33: AAA domain; P 93.1 0.076 1.6E-06 54.2 3.5 23 162-184 1-23 (143)
348 cd03247 ABCC_cytochrome_bd The 93.1 0.3 6.5E-06 52.0 8.1 25 160-184 28-52 (178)
349 PF01583 APS_kinase: Adenylyls 93.1 0.11 2.4E-06 53.0 4.4 35 161-197 3-37 (156)
350 COG0465 HflB ATP-dependent Zn 93.0 0.56 1.2E-05 58.0 11.1 172 137-332 148-355 (596)
351 COG1066 Sms Predicted ATP-depe 93.0 0.34 7.3E-06 56.1 8.6 86 159-250 92-179 (456)
352 PF00154 RecA: recA bacterial 93.0 0.47 1E-05 54.5 9.9 84 160-251 53-143 (322)
353 COG3640 CooC CO dehydrogenase 93.0 0.16 3.6E-06 54.1 5.6 41 162-203 2-42 (255)
354 PF10236 DAP3: Mitochondrial r 93.0 1.6 3.5E-05 50.7 14.5 46 289-334 258-305 (309)
355 cd01124 KaiC KaiC is a circadi 93.0 0.26 5.7E-06 52.9 7.6 45 162-210 1-45 (187)
356 PRK08233 hypothetical protein; 93.0 0.08 1.7E-06 56.6 3.6 26 160-185 3-28 (182)
357 cd01135 V_A-ATPase_B V/A-type 93.0 0.56 1.2E-05 52.5 10.1 91 161-251 70-178 (276)
358 PRK06762 hypothetical protein; 92.9 0.092 2E-06 55.2 3.7 25 160-184 2-26 (166)
359 PRK06067 flagellar accessory p 92.9 0.51 1.1E-05 52.7 9.9 86 159-249 24-130 (234)
360 TIGR01360 aden_kin_iso1 adenyl 92.8 0.087 1.9E-06 56.7 3.6 26 159-184 2-27 (188)
361 PF14532 Sigma54_activ_2: Sigm 92.8 0.037 8E-07 56.1 0.6 43 143-185 2-46 (138)
362 CHL00206 ycf2 Ycf2; Provisiona 92.8 0.47 1E-05 65.2 10.7 26 160-185 1630-1655(2281)
363 COG1121 ZnuC ABC-type Mn/Zn tr 92.8 0.31 6.7E-06 53.7 7.7 23 161-183 31-53 (254)
364 PRK13765 ATP-dependent proteas 92.8 0.2 4.3E-06 63.5 7.0 80 135-218 27-106 (637)
365 PF03205 MobB: Molybdopterin g 92.8 0.17 3.6E-06 51.2 5.2 39 161-200 1-39 (140)
366 PRK05480 uridine/cytidine kina 92.8 0.098 2.1E-06 57.3 3.9 27 158-184 4-30 (209)
367 PF08298 AAA_PrkA: PrkA AAA do 92.8 1.1 2.5E-05 51.6 12.3 92 139-235 61-165 (358)
368 PRK09519 recA DNA recombinatio 92.8 0.37 7.9E-06 61.9 9.3 84 159-249 59-148 (790)
369 PF08433 KTI12: Chromatin asso 92.8 0.22 4.8E-06 56.3 6.7 26 161-186 2-27 (270)
370 PRK03839 putative kinase; Prov 92.7 0.092 2E-06 56.0 3.5 24 162-185 2-25 (180)
371 TIGR01069 mutS2 MutS2 family p 92.7 0.14 3E-06 66.8 5.8 186 159-358 321-521 (771)
372 COG0194 Gmk Guanylate kinase [ 92.7 0.34 7.4E-06 50.2 7.3 25 160-184 4-28 (191)
373 PTZ00301 uridine kinase; Provi 92.7 0.1 2.2E-06 56.7 3.8 26 160-185 3-28 (210)
374 cd00561 CobA_CobO_BtuR ATP:cor 92.7 0.78 1.7E-05 47.1 9.9 115 161-278 3-139 (159)
375 TIGR00235 udk uridine kinase. 92.6 0.11 2.5E-06 56.7 4.1 27 159-185 5-31 (207)
376 cd03216 ABC_Carb_Monos_I This 92.6 0.16 3.4E-06 53.2 5.0 114 160-281 26-146 (163)
377 cd03228 ABCC_MRP_Like The MRP 92.6 0.32 6.9E-06 51.3 7.3 27 159-185 27-53 (171)
378 PF00910 RNA_helicase: RNA hel 92.6 0.11 2.4E-06 49.9 3.4 23 163-185 1-23 (107)
379 PRK10416 signal recognition pa 92.6 0.83 1.8E-05 53.1 11.3 28 159-186 113-140 (318)
380 cd02027 APSK Adenosine 5'-phos 92.5 0.61 1.3E-05 47.8 9.1 24 162-185 1-24 (149)
381 PTZ00088 adenylate kinase 1; P 92.5 0.12 2.7E-06 56.9 4.1 24 162-185 8-31 (229)
382 PRK05342 clpX ATP-dependent pr 92.5 0.17 3.8E-06 60.8 5.7 45 140-184 72-132 (412)
383 PF00560 LRR_1: Leucine Rich R 92.4 0.067 1.5E-06 34.6 1.2 22 536-557 1-22 (22)
384 COG1703 ArgK Putative periplas 92.4 0.24 5.1E-06 55.0 6.0 60 149-208 38-99 (323)
385 PRK12597 F0F1 ATP synthase sub 92.4 0.56 1.2E-05 56.8 9.8 90 160-250 143-248 (461)
386 PRK00625 shikimate kinase; Pro 92.4 0.1 2.3E-06 54.8 3.3 24 162-185 2-25 (173)
387 KOG3864 Uncharacterized conser 92.3 0.019 4E-07 59.5 -2.3 65 1151-1219 101-167 (221)
388 TIGR00390 hslU ATP-dependent p 92.3 0.36 7.8E-06 57.0 7.7 73 140-214 13-103 (441)
389 TIGR03878 thermo_KaiC_2 KaiC d 92.3 0.56 1.2E-05 53.1 9.3 40 159-200 35-74 (259)
390 COG0572 Udk Uridine kinase [Nu 92.3 0.14 2.9E-06 54.9 3.9 27 159-185 7-33 (218)
391 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.2 0.44 9.5E-06 48.6 7.6 25 160-184 26-50 (144)
392 KOG0735 AAA+-type ATPase [Post 92.2 3.2 6.9E-05 51.4 15.5 148 161-332 702-870 (952)
393 KOG0652 26S proteasome regulat 92.2 2.1 4.5E-05 46.1 12.4 190 134-343 166-392 (424)
394 cd03238 ABC_UvrA The excision 92.2 0.37 8.1E-06 50.8 7.2 23 160-182 21-43 (176)
395 cd03223 ABCD_peroxisomal_ALDP 92.2 0.6 1.3E-05 48.9 8.8 26 160-185 27-52 (166)
396 KOG3347 Predicted nucleotide k 92.2 0.12 2.6E-06 50.7 3.1 34 161-201 8-41 (176)
397 PRK04040 adenylate kinase; Pro 92.2 0.13 2.7E-06 55.1 3.7 25 161-185 3-27 (188)
398 TIGR00416 sms DNA repair prote 92.2 0.36 7.7E-06 59.2 8.0 86 159-249 93-180 (454)
399 PRK11823 DNA repair protein Ra 92.1 0.29 6.4E-06 59.9 7.2 86 159-249 79-166 (446)
400 PF12775 AAA_7: P-loop contain 92.1 0.15 3.2E-06 58.0 4.4 90 149-251 23-112 (272)
401 TIGR03305 alt_F1F0_F1_bet alte 92.1 0.66 1.4E-05 55.8 9.9 90 161-251 139-244 (449)
402 COG0488 Uup ATPase components 92.1 2 4.3E-05 53.5 14.3 128 160-294 348-511 (530)
403 PRK06217 hypothetical protein; 92.0 0.22 4.9E-06 53.2 5.5 34 162-196 3-38 (183)
404 TIGR03575 selen_PSTK_euk L-ser 92.0 0.31 6.7E-06 56.7 6.8 23 163-185 2-24 (340)
405 PRK09280 F0F1 ATP synthase sub 92.0 0.82 1.8E-05 55.2 10.4 90 161-251 145-250 (463)
406 TIGR00708 cobA cob(I)alamin ad 92.0 0.76 1.6E-05 47.8 8.9 118 160-278 5-141 (173)
407 KOG1051 Chaperone HSP104 and r 91.9 0.67 1.4E-05 59.9 10.2 103 139-251 562-672 (898)
408 PRK00409 recombination and DNA 91.9 0.66 1.4E-05 60.9 10.5 179 158-358 325-526 (782)
409 PRK08972 fliI flagellum-specif 91.9 0.4 8.6E-06 57.3 7.7 88 160-251 162-264 (444)
410 TIGR02655 circ_KaiC circadian 91.9 0.55 1.2E-05 58.5 9.4 86 159-249 262-363 (484)
411 cd01125 repA Hexameric Replica 91.9 0.7 1.5E-05 51.8 9.4 24 162-185 3-26 (239)
412 TIGR01817 nifA Nif-specific re 91.8 0.9 1.9E-05 57.7 11.3 48 137-184 194-243 (534)
413 TIGR00750 lao LAO/AO transport 91.7 0.46 9.9E-06 55.2 7.9 30 157-186 31-60 (300)
414 KOG0737 AAA+-type ATPase [Post 91.7 1.4 2.9E-05 50.6 11.1 51 138-190 91-155 (386)
415 PRK06002 fliI flagellum-specif 91.6 0.65 1.4E-05 55.8 9.1 89 160-251 165-266 (450)
416 cd00544 CobU Adenosylcobinamid 91.5 0.57 1.2E-05 49.0 7.6 80 163-248 2-82 (169)
417 PF06745 KaiC: KaiC; InterPro 91.5 0.37 8E-06 53.6 6.7 86 160-249 19-125 (226)
418 COG0003 ArsA Predicted ATPase 91.5 0.34 7.3E-06 55.9 6.3 49 160-210 2-50 (322)
419 KOG2170 ATPase of the AAA+ sup 91.4 0.58 1.3E-05 51.8 7.6 47 139-185 82-135 (344)
420 KOG0927 Predicted transporter 91.4 1.1 2.4E-05 53.7 10.3 121 159-281 415-570 (614)
421 PRK09435 membrane ATPase/prote 91.4 1.4 3E-05 51.4 11.2 39 149-187 43-83 (332)
422 PRK00131 aroK shikimate kinase 91.4 0.16 3.5E-06 53.8 3.4 26 160-185 4-29 (175)
423 KOG1532 GTPase XAB1, interacts 91.3 0.21 4.5E-06 54.0 4.1 60 159-218 18-86 (366)
424 PF13245 AAA_19: Part of AAA d 91.3 0.39 8.5E-06 42.6 5.2 26 159-184 9-34 (76)
425 cd03283 ABC_MutS-like MutS-lik 91.3 0.66 1.4E-05 50.2 8.1 24 161-184 26-49 (199)
426 TIGR00382 clpX endopeptidase C 91.3 0.56 1.2E-05 56.2 8.1 46 139-184 77-140 (413)
427 PF07726 AAA_3: ATPase family 91.3 0.16 3.5E-06 49.4 2.9 28 163-192 2-29 (131)
428 PRK13768 GTPase; Provisional 91.3 0.8 1.7E-05 51.7 9.0 37 160-198 2-38 (253)
429 cd01122 GP4d_helicase GP4d_hel 91.2 1.2 2.6E-05 51.1 10.7 52 160-214 30-81 (271)
430 COG3854 SpoIIIAA ncharacterize 91.2 0.62 1.3E-05 49.4 7.2 118 151-280 128-256 (308)
431 TIGR03881 KaiC_arch_4 KaiC dom 91.2 1.3 2.9E-05 49.2 10.7 53 159-216 19-71 (229)
432 COG1224 TIP49 DNA helicase TIP 91.2 0.39 8.5E-06 54.2 6.1 55 137-191 37-96 (450)
433 PRK10751 molybdopterin-guanine 91.2 0.23 4.9E-06 51.8 4.1 28 159-186 5-32 (173)
434 TIGR00150 HI0065_YjeE ATPase, 91.1 0.33 7.1E-06 48.2 5.0 26 160-185 22-47 (133)
435 PRK00889 adenylylsulfate kinas 91.1 0.22 4.8E-06 52.8 4.1 27 159-185 3-29 (175)
436 cd02020 CMPK Cytidine monophos 91.1 0.16 3.4E-06 52.0 3.0 24 162-185 1-24 (147)
437 cd01134 V_A-ATPase_A V/A-type 91.1 1.2 2.6E-05 51.4 10.0 58 151-212 147-206 (369)
438 PRK11608 pspF phage shock prot 91.1 0.38 8.3E-06 56.5 6.5 44 140-183 7-52 (326)
439 PRK08927 fliI flagellum-specif 91.0 1 2.2E-05 54.1 10.0 89 159-251 157-260 (442)
440 COG4608 AppF ABC-type oligopep 91.0 0.75 1.6E-05 50.8 8.1 119 159-282 38-175 (268)
441 PRK12678 transcription termina 91.0 0.72 1.6E-05 56.2 8.5 87 161-251 417-515 (672)
442 COG0529 CysC Adenylylsulfate k 91.0 0.38 8.3E-06 49.0 5.3 31 156-186 19-49 (197)
443 PRK15429 formate hydrogenlyase 91.0 0.52 1.1E-05 61.7 8.2 47 138-184 375-423 (686)
444 TIGR02322 phosphon_PhnN phosph 91.0 0.18 4E-06 53.6 3.4 25 161-185 2-26 (179)
445 cd02021 GntK Gluconate kinase 90.9 0.16 3.5E-06 52.3 2.8 23 162-184 1-23 (150)
446 COG1102 Cmk Cytidylate kinase 90.9 0.19 4E-06 50.4 2.9 45 162-219 2-46 (179)
447 PRK13947 shikimate kinase; Pro 90.9 0.18 3.9E-06 53.2 3.2 24 162-185 3-26 (171)
448 PRK00279 adk adenylate kinase; 90.8 0.86 1.9E-05 50.1 8.7 24 162-185 2-25 (215)
449 cd00227 CPT Chloramphenicol (C 90.8 0.18 4E-06 53.4 3.2 24 161-184 3-26 (175)
450 cd02023 UMPK Uridine monophosp 90.8 0.16 3.4E-06 55.2 2.8 23 162-184 1-23 (198)
451 cd01132 F1_ATPase_alpha F1 ATP 90.8 1.2 2.6E-05 50.0 9.6 93 161-257 70-180 (274)
452 TIGR00764 lon_rel lon-related 90.8 0.58 1.3E-05 59.6 8.1 76 138-217 17-92 (608)
453 cd02024 NRK1 Nicotinamide ribo 90.8 0.17 3.7E-06 53.7 2.8 23 162-184 1-23 (187)
454 PTZ00185 ATPase alpha subunit; 90.8 1.3 2.9E-05 53.4 10.4 91 161-251 190-301 (574)
455 TIGR02030 BchI-ChlI magnesium 90.7 0.33 7.2E-06 56.7 5.4 47 138-184 3-49 (337)
456 PRK13949 shikimate kinase; Pro 90.7 0.19 4.2E-06 52.7 3.2 24 162-185 3-26 (169)
457 PRK13407 bchI magnesium chelat 90.7 0.3 6.4E-06 57.0 5.0 48 137-184 6-53 (334)
458 TIGR01039 atpD ATP synthase, F 90.7 1.4 3E-05 53.2 10.5 91 160-251 143-249 (461)
459 PF06068 TIP49: TIP49 C-termin 90.6 0.34 7.3E-06 55.8 5.1 53 138-190 23-80 (398)
460 COG1936 Predicted nucleotide k 90.6 0.19 4.2E-06 51.1 2.9 20 162-181 2-21 (180)
461 TIGR00073 hypB hydrogenase acc 90.6 0.38 8.2E-06 52.6 5.5 33 153-185 15-47 (207)
462 PRK05201 hslU ATP-dependent pr 90.6 0.53 1.1E-05 55.7 6.9 74 140-215 16-107 (443)
463 cd00267 ABC_ATPase ABC (ATP-bi 90.6 0.58 1.3E-05 48.5 6.6 112 161-281 26-144 (157)
464 TIGR00176 mobB molybdopterin-g 90.5 0.31 6.8E-06 50.2 4.5 34 162-196 1-34 (155)
465 COG0467 RAD55 RecA-superfamily 90.5 0.33 7E-06 55.3 5.1 55 158-217 21-75 (260)
466 PRK14530 adenylate kinase; Pro 90.4 0.21 4.6E-06 54.9 3.3 24 161-184 4-27 (215)
467 PRK08149 ATP synthase SpaL; Va 90.4 1 2.2E-05 54.1 9.1 89 159-251 150-253 (428)
468 cd00464 SK Shikimate kinase (S 90.4 0.22 4.8E-06 51.4 3.3 23 163-185 2-24 (154)
469 TIGR01040 V-ATPase_V1_B V-type 90.3 1.4 3E-05 53.0 10.0 90 161-250 142-258 (466)
470 KOG0726 26S proteasome regulat 90.2 1.2 2.6E-05 48.7 8.6 52 134-185 180-244 (440)
471 PRK14529 adenylate kinase; Pro 90.2 0.82 1.8E-05 50.0 7.5 84 163-251 3-88 (223)
472 PRK13975 thymidylate kinase; P 90.1 0.25 5.4E-06 53.5 3.6 25 161-185 3-27 (196)
473 cd02028 UMPK_like Uridine mono 90.1 0.23 5E-06 52.7 3.2 24 162-185 1-24 (179)
474 KOG3864 Uncharacterized conser 89.9 0.07 1.5E-06 55.4 -0.9 71 779-851 121-191 (221)
475 KOG1942 DNA helicase, TBP-inte 89.9 0.62 1.3E-05 50.9 6.1 56 136-191 35-95 (456)
476 CHL00081 chlI Mg-protoporyphyr 89.9 0.38 8.2E-06 56.3 4.9 49 137-185 15-63 (350)
477 TIGR03263 guanyl_kin guanylate 89.9 0.21 4.6E-06 53.2 2.7 24 161-184 2-25 (180)
478 PRK15453 phosphoribulokinase; 89.8 1.6 3.4E-05 49.0 9.4 27 159-185 4-30 (290)
479 cd03243 ABC_MutS_homologs The 89.8 0.18 3.9E-06 54.9 2.1 23 161-183 30-52 (202)
480 cd03287 ABC_MSH3_euk MutS3 hom 89.7 0.26 5.6E-06 54.1 3.2 117 159-282 30-159 (222)
481 PF05970 PIF1: PIF1-like helic 89.7 0.66 1.4E-05 55.5 7.0 41 146-186 8-48 (364)
482 PRK06731 flhF flagellar biosyn 89.7 0.96 2.1E-05 51.1 7.8 91 159-251 74-166 (270)
483 PHA02774 E1; Provisional 89.7 0.64 1.4E-05 57.0 6.7 48 147-198 420-468 (613)
484 PRK12339 2-phosphoglycerate ki 89.7 0.3 6.6E-06 52.5 3.7 25 160-184 3-27 (197)
485 PF13086 AAA_11: AAA domain; P 89.6 0.8 1.7E-05 51.0 7.3 23 162-184 19-41 (236)
486 TIGR01041 ATP_syn_B_arch ATP s 89.6 1.6 3.4E-05 53.0 10.0 91 161-251 142-250 (458)
487 PRK05057 aroK shikimate kinase 89.6 0.28 6.2E-06 51.7 3.3 24 161-184 5-28 (172)
488 cd03285 ABC_MSH2_euk MutS2 hom 89.6 0.13 2.7E-06 56.8 0.7 173 159-343 29-218 (222)
489 CHL00060 atpB ATP synthase CF1 89.5 1.2 2.7E-05 54.0 8.9 91 160-251 161-274 (494)
490 PRK10875 recD exonuclease V su 89.5 0.63 1.4E-05 58.9 6.9 53 160-212 167-220 (615)
491 cd00984 DnaB_C DnaB helicase C 89.5 2.3 4.9E-05 47.8 10.9 52 160-214 13-64 (242)
492 TIGR01313 therm_gnt_kin carboh 89.5 0.23 5E-06 51.9 2.6 22 163-184 1-22 (163)
493 COG2019 AdkA Archaeal adenylat 89.5 0.34 7.4E-06 48.8 3.5 25 160-184 4-28 (189)
494 cd01136 ATPase_flagellum-secre 89.5 1.4 3.1E-05 51.0 9.1 88 160-251 69-171 (326)
495 PF03266 NTPase_1: NTPase; In 89.4 0.31 6.7E-06 51.0 3.4 23 163-185 2-24 (168)
496 PRK13695 putative NTPase; Prov 89.4 0.44 9.6E-06 50.4 4.7 34 162-196 2-35 (174)
497 cd03282 ABC_MSH4_euk MutS4 hom 89.4 0.28 6.1E-06 53.2 3.2 117 159-282 28-156 (204)
498 PRK03846 adenylylsulfate kinas 89.4 0.37 7.9E-06 52.3 4.1 29 157-185 21-49 (198)
499 TIGR02974 phageshock_pspF psp 89.3 0.52 1.1E-05 55.3 5.6 43 142-184 2-46 (329)
500 PRK14527 adenylate kinase; Pro 89.3 0.32 6.8E-06 52.4 3.5 27 159-185 5-31 (191)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-79 Score=777.15 Aligned_cols=627 Identities=28% Similarity=0.433 Sum_probs=493.6
Q ss_pred ccccchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHhhhhhcccccC-------
Q 000447 5 KQFGYFCCYKSNFDHLTKEVEKLRERRESVQHRVDFAKENGEEIEQSVENWLISVDKIVEEAGKFVEDDEEAN------- 77 (1497)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~~~~~~~v~~wl~~v~~~~~d~ed~ld~~~~~~------- 77 (1497)
+...++......+.+.++.+..|++.+..++.++++|+++ +.....+..|...++++.|++++.++.+.-..
T Consensus 11 ~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~ 89 (889)
T KOG4658|consen 11 KLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND 89 (889)
T ss_pred hHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445777888899999999999999999999999999997 56678999999999999999999876432110
Q ss_pred ----------CCcccccC-CChhhhhHHHHHHHHHHHHHHHHhhcCCCcceeccccccccccccccccCCCcccccchHH
Q 000447 78 ----------NPCFKVLC-PNLKNRHHLSKKAAKEVKAIVELQDEGNFDRVSVRGISRDRLVAYTESYNEGHEFIESRES 146 (1497)
Q Consensus 78 ----------~~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~ 146 (1497)
.-|+.+.+ .+...-+++++++-++.+.++.+..++.+..++.... + .......+...... +|.+.
T Consensus 90 ~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~--~-~~~~e~~~~~~~~~-VG~e~ 165 (889)
T KOG4658|consen 90 LLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLD--P-REKVETRPIQSESD-VGLET 165 (889)
T ss_pred HhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccccc--c-hhhcccCCCCcccc-ccHHH
Confidence 01111211 2334445566777777777777766655544432111 1 11122222333333 89999
Q ss_pred HHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHh-ccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCCh-
Q 000447 147 ILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK-EGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESD- 224 (1497)
Q Consensus 147 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~- 224 (1497)
.++++.+.|.+++..+++|+||||+||||||++++|+.. ++++||.++||.||+.++..+++++|+..++........
T Consensus 166 ~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~ 245 (889)
T KOG4658|consen 166 MLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDK 245 (889)
T ss_pred HHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchh
Confidence 999999999987779999999999999999999999998 999999999999999999999999999999875444332
Q ss_pred --HHHHHHHHHHHhcCCeEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhhhcCcccceEEecCCCHHHHHH
Q 000447 225 --SERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWS 302 (1497)
Q Consensus 225 --~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~ 302 (1497)
...+..+.+.+. .|||+||+||||+..+|+.++.|+|...+||||++|||++.|+...|++...++++.|+++|||+
T Consensus 246 ~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~ 324 (889)
T KOG4658|consen 246 EEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWD 324 (889)
T ss_pred hHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHH
Confidence 345555666664 89999999999999999999999999989999999999999999768988999999999999999
Q ss_pred HHHHHhCCC--CCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHH-HHHHHHHHHhh-ccCccchH-HHHHhHHHH
Q 000447 303 LFSKVVGNC--VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFV-WKKALQELRFS-ARNFTGLE-ALLGSTIEL 377 (1497)
Q Consensus 303 Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~-w~~~l~~l~~~-~~~~~~~~-~~~~~~l~l 377 (1497)
||++.+|.. ...+.++++|++++++|+|+|||+.++|+.|+.+...+ |+++.+.+.+. ..+.++++ .++ +++++
T Consensus 325 LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~-~iLkl 403 (889)
T KOG4658|consen 325 LFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL-PILKL 403 (889)
T ss_pred HHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH-Hhhhc
Confidence 999999754 33455899999999999999999999999999998775 99999999855 33334434 488 99999
Q ss_pred HhccCCccchhhhhhhhcccCCCCCcchhhHhhhccccccccchhhHHHHHHHHHHHHHHHhhccccccCC---CcCcee
Q 000447 378 IYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGLKDTCLLHDDD---TADWFS 454 (1497)
Q Consensus 378 sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~~L~~~~ll~~~~---~~~~~~ 454 (1497)
||+.||++ +|.||+|||+||++|.++++.|+.+|+|+||+.+....+.+.+.+++|+++|++++|++..+ ....|+
T Consensus 404 Syd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~k 482 (889)
T KOG4658|consen 404 SYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVK 482 (889)
T ss_pred cHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEE
Confidence 99999965 99999999999995555559999999999999775545566677788899999999998765 447899
Q ss_pred ehhhHHHHHHHHhh-----c-ceEEecC-ccccCCCccccccceEEEcccCCCCCCCCccCCCCccEEEcCCCCC-CCCC
Q 000447 455 MLGFVRNVAISIAS-----I-NLMVRND-ALIEWPNKDMLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDP-FLHI 526 (1497)
Q Consensus 455 mHdlv~d~a~~~~~-----~-~~~~~~~-~~~~~~~~~~~~~~~~lsl~~~~~~~lp~~~~~~~Lr~L~L~~~~~-~~~l 526 (1497)
|||+|||+|.++|. + +..+..+ +..+.|....+..+|+++++++.+..++....+++|++|.+.+|.. ...+
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i 562 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI 562 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc
Confidence 99999999999999 3 4333332 4445666667788999999999999999999999999999999874 5778
Q ss_pred CchhhcCCCCccEEEecCc-cCccCCccCCCCCCCCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccchhhcCCCcc
Q 000447 527 PDNFFAGMPKLRVLVLTRM-KLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQL 605 (1497)
Q Consensus 527 p~~~f~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L 605 (1497)
+..+|..++.||||||++| .+.++|++|+.|.|||| |+++++.++.||.++++|+.|
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry----------------------L~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY----------------------LDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc----------------------ccccCCCccccchHHHHHHhh
Confidence 8888999999999999976 45578877666555555 455556677788888888888
Q ss_pred CEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChhhcCCCCCCcEEEee
Q 000447 606 KLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIH 671 (1497)
Q Consensus 606 ~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 671 (1497)
++||+..+..+..+| +++..|.+||+|.+...... .....+.++.++.+|+.+.+.
T Consensus 621 ~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALS---------NDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred heecccccccccccc-chhhhcccccEEEeeccccc---------cchhhHHhhhcccchhhheee
Confidence 888888776555554 33566888888877654311 123345666667777766664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-59 Score=631.24 Aligned_cols=688 Identities=22% Similarity=0.266 Sum_probs=460.3
Q ss_pred CcccccchHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe---cCCc---------
Q 000447 137 GHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV---SQTP--------- 202 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~--------- 202 (1497)
+..+++||++.++++..+|. .+++++|+||||||+||||||+++|++.. .+|++.+|+.. +...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 45568999999999998886 56799999999999999999999999875 67998888742 1110
Q ss_pred --C-HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhh
Q 000447 203 --D-LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDV 279 (1497)
Q Consensus 203 --~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 279 (1497)
+ ...++++++.++-....... .....+.+++. ++|+||||||||+..+|+.+.....+.++||+||||||++.+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 1 12344444444322211100 01234455564 899999999999999999988776667889999999999999
Q ss_pred hhhcCcccceEEecCCCHHHHHHHHHHHhCCC-CCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHHHHHHHHH
Q 000447 280 LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNC-VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1497)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~l~~l~ 358 (1497)
+. .++..+.|+++.++++|||+||+++|+.. ..++++++++++|+++|+|+|||++++|++|++++..+|+.++++++
T Consensus 337 l~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~ 415 (1153)
T PLN03210 337 LR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415 (1153)
T ss_pred HH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88 37778899999999999999999999743 34556889999999999999999999999999998888999999988
Q ss_pred hhccCccchHHHHHhHHHHHhccCCccchhhhhhhhcccCCCCCcchhhHhhhccccccccchhhHHHHHHHHHHHHHHH
Q 000447 359 FSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGL 438 (1497)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~lsy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~~L 438 (1497)
... ..++. .+|++||+.|++++.|.||+++|+|+. +..++ .+..|++.+.+.. ...++.|
T Consensus 416 ~~~-----~~~I~-~~L~~SYd~L~~~~~k~~Fl~ia~ff~--~~~~~-~v~~~l~~~~~~~-----------~~~l~~L 475 (1153)
T PLN03210 416 NGL-----DGKIE-KTLRVSYDGLNNKKDKAIFRHIACLFN--GEKVN-DIKLLLANSDLDV-----------NIGLKNL 475 (1153)
T ss_pred hCc-----cHHHH-HHHHHhhhccCccchhhhhheehhhcC--CCCHH-HHHHHHHhcCCCc-----------hhChHHH
Confidence 321 13477 999999999987546999999999998 45543 3555666554321 1128899
Q ss_pred hhccccccCCCcCceeehhhHHHHHHHHhhcce-------EEecC-cccc-CCCccccccceEEEcccCCCCCCC--Cc-
Q 000447 439 KDTCLLHDDDTADWFSMLGFVRNVAISIASINL-------MVRND-ALIE-WPNKDMLKNCIAIFLHDINTGELP--EG- 506 (1497)
Q Consensus 439 ~~~~ll~~~~~~~~~~mHdlv~d~a~~~~~~~~-------~~~~~-~~~~-~~~~~~~~~~~~lsl~~~~~~~lp--~~- 506 (1497)
++++|++.. .+.|.|||++|++|+.+++++. +..+. .... .......++++.+++....+.++. ..
T Consensus 476 ~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 476 VDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 999999864 3579999999999999987632 11110 0000 001112245666666544443321 11
Q ss_pred c-CCCCccEEEcCCCC------CCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCC-cccCC
Q 000447 507 L-EYPHLTSLCMNPKD------PFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGN 578 (1497)
Q Consensus 507 ~-~~~~Lr~L~L~~~~------~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~ 578 (1497)
+ ++++|+.|.+..+. ....+|..+..-...||.|++.++.+..+|..+ ...+|+.|++++|.+..+ ..+..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 1 56677777665432 122345443222245777777777777777665 456777777777766655 55666
Q ss_pred CCCCcEEEeecC-CCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChh
Q 000447 579 LKNLEILSLCCS-DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQ 657 (1497)
Q Consensus 579 L~~L~~L~Ls~~-~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 657 (1497)
+++|++|+|+++ .++.+| .++.+++|++|++++|..+..+|.. ++++++|+.|++++|.....+ +.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~L-----------p~ 699 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEIL-----------PT 699 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCcc-----------CC
Confidence 777777777654 355666 3666777777777777666667766 667777777777665432111 11
Q ss_pred hcCCCCCCcEEEeeccCCC-CCCcccccccccceeEEeccccCCCCCCCCcceeeccCCCccchHHHHHhhccccccccc
Q 000447 658 ELSILSHLTTLEIHIRDAV-ILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLD 736 (1497)
Q Consensus 658 ~L~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~L~ 736 (1497)
.+ ++++|+.|+++++... .+| ....+|+.|++.
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p---------------------------------------------~~~~nL~~L~L~ 733 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFP---------------------------------------------DISTNISWLDLD 733 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccc---------------------------------------------cccCCcCeeecC
Confidence 11 4556666666544211 000 011234444444
Q ss_pred ccCCccccccccCcCCCcccccccccccCceEEeccCccccccCcccccceeeccccccchhhhcCCCCcccccceeEEE
Q 000447 737 EVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIK 816 (1497)
Q Consensus 737 ~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~f~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~ 816 (1497)
++. ....... ..+++|++|.+.++..... .. .+. .+ .......+++|+.|+
T Consensus 734 ~n~-i~~lP~~---~~l~~L~~L~l~~~~~~~l-~~--------~~~-----------~l-----~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 734 ETA-IEEFPSN---LRLENLDELILCEMKSEKL-WE--------RVQ-----------PL-----TPLMTMLSPSLTRLF 784 (1153)
T ss_pred CCc-ccccccc---ccccccccccccccchhhc-cc--------ccc-----------cc-----chhhhhccccchhee
Confidence 332 1111111 1234444444443321100 00 000 00 000112357899999
Q ss_pred EeeCCCCCCCCchhhhcCCCCccEEEeccCccchhhhccCCCCCcCCCccccccccccceEeccCCCCccccccCcCCCC
Q 000447 817 VRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSD 896 (1497)
Q Consensus 817 L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~ 896 (1497)
+.+|+.+..+|. .++++++|+.|++++|..++.++. ...+++|+.|++++|.++..++.
T Consensus 785 Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~-------------~~~L~sL~~L~Ls~c~~L~~~p~------ 843 (1153)
T PLN03210 785 LSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT-------------GINLESLESLDLSGCSRLRTFPD------ 843 (1153)
T ss_pred CCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC-------------CCCccccCEEECCCCCccccccc------
Confidence 999988888875 478899999999999998887763 12578999999999998877543
Q ss_pred CCCCCCCCcccccccccccceeccccccccccCCCCCCCCCCcccccEEEEccCCCccccCCchhHhhccccceEEEeec
Q 000447 897 ELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHC 976 (1497)
Q Consensus 897 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~i~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C 976 (1497)
..++|+.|++.++.+.++... ...+++|+.|++.+|++++.++. ....+++|+.|++++|
T Consensus 844 -------------~~~nL~~L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 844 -------------ISTNISDLNLSRTGIEEVPWW-----IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDC 903 (1153)
T ss_pred -------------cccccCEeECCCCCCccChHH-----HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCC
Confidence 146789999998876654321 23688999999999999998755 3577899999999999
Q ss_pred ccccee
Q 000447 977 TVLEEI 982 (1497)
Q Consensus 977 ~~L~~l 982 (1497)
++|+.+
T Consensus 904 ~~L~~~ 909 (1153)
T PLN03210 904 GALTEA 909 (1153)
T ss_pred cccccc
Confidence 988765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.7e-39 Score=371.91 Aligned_cols=273 Identities=34% Similarity=0.493 Sum_probs=218.0
Q ss_pred hHHHHHHHHHHHcC--CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC-
Q 000447 144 RESILNDILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC- 220 (1497)
Q Consensus 144 R~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 220 (1497)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++.+.+.+|+.++|++++...+..++++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999996 789999999999999999999999997778999999999999999999999999999988733
Q ss_pred ---CCChHHHHHHHHHHHhcCCeEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhhhcCcc-cceEEecCCC
Q 000447 221 ---EESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHC-QNNYCVSVLN 296 (1497)
Q Consensus 221 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~~-~~~~~l~~L~ 296 (1497)
..........+.+.+. ++++||||||||+...|+.+...++....|++||||||+..++.. ++. ...+++++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~-~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGS-LGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTT-HHSCEEEEECSS--
T ss_pred cccccccccccccchhhhc-cccceeeeeeecccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 2345556667777765 789999999999999999998888877789999999999998874 333 6789999999
Q ss_pred HHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCC-hHHHHHHHHHHHhhccCcc-chHHHHH
Q 000447 297 KEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLPIAILTVARTLRNKP-LFVWKKALQELRFSARNFT-GLEALLG 372 (1497)
Q Consensus 297 ~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~-~~~w~~~l~~l~~~~~~~~-~~~~~~~ 372 (1497)
++||++||++.++... ..+..++.+++|+++|+|+||||+++|++|+.+. ..+|+.+++++.+...... ....++
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~- 237 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF- 237 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 9999999999997433 3445567899999999999999999999996553 3349999998885543332 245577
Q ss_pred hHHHHHhccCCccchhhhhhhhcccCCCCCcchhhHhhhccccccccc
Q 000447 373 STIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFED 420 (1497)
Q Consensus 373 ~~l~lsy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~ 420 (1497)
.++.+||+.|+++ +|+||+|||+||+++.++.+.++++|+++|+++.
T Consensus 238 ~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999997 8999999999999666777999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=6.4e-30 Score=347.79 Aligned_cols=528 Identities=20% Similarity=0.190 Sum_probs=289.6
Q ss_pred cceEEEcccCCCCC-CCCcc-CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCc-cCCccCCCCCCCCEEec
Q 000447 489 NCIAIFLHDINTGE-LPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFCHLPNLESLCL 565 (1497)
Q Consensus 489 ~~~~lsl~~~~~~~-lp~~~-~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L 565 (1497)
+++.+.+.++.+.. ++..+ .+++|++|++++|.+...+|..+|.++++||+|+|++|.+. .+|. +.+.+|++|+|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 56677777666443 33333 57777777777777666677776667777777777777665 3443 45677777777
Q ss_pred cCCCCCC-C-cccCCCCCCcEEEeecCCCc-ccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccc
Q 000447 566 DQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEW 642 (1497)
Q Consensus 566 ~~~~l~~-l-~~i~~L~~L~~L~Ls~~~l~-~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~ 642 (1497)
++|.+.. + ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC
Confidence 7776643 2 55777777777777777654 56767777777777777777644556655 6777777777777766552
Q ss_pred cccccccccCccChhhcCCCCCCcEEEeeccCCCCCCcccccccccceeEEeccccCCCCCCCCcceeeccCCCccchHH
Q 000447 643 EFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDE 722 (1497)
Q Consensus 643 ~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 722 (1497)
..+..++++++|+.|++++|....
T Consensus 227 -----------~~p~~l~~l~~L~~L~L~~n~l~~--------------------------------------------- 250 (968)
T PLN00113 227 -----------EIPYEIGGLTSLNHLDLVYNNLTG--------------------------------------------- 250 (968)
T ss_pred -----------cCChhHhcCCCCCEEECcCceecc---------------------------------------------
Confidence 233556666777777666553321
Q ss_pred HHHhhcccccccccccCCccccccccCcCCCcccccccccccCceEEeccCccccccCcccccceeeccccccchhhhcC
Q 000447 723 IIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDG 802 (1497)
Q Consensus 723 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~f~~L~~L~L~~~~~l~~~~~~ 802 (1497)
.....+ ..+++|++|++++|.....++.. ...+++|+.|++.++.-...+
T Consensus 251 --------------------~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~-----l~~l~~L~~L~Ls~n~l~~~~--- 300 (968)
T PLN00113 251 --------------------PIPSSL--GNLKNLQYLFLYQNKLSGPIPPS-----IFSLQKLISLDLSDNSLSGEI--- 300 (968)
T ss_pred --------------------ccChhH--hCCCCCCEEECcCCeeeccCchh-----HhhccCcCEEECcCCeeccCC---
Confidence 111111 35677777777776532222111 122445555555443211111
Q ss_pred CCCcccccceeEEEEeeCCCCCCCCchhhhcCCCCccEEEeccCccchhhhccCCCCCcCCCccccccccccceEeccCC
Q 000447 803 LLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFL 882 (1497)
Q Consensus 803 ~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c 882 (1497)
+.....+++|+.|++.+|.-...+| ..+..+++|+.|++++|.-...++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p----------------------------- 349 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIP----------------------------- 349 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCC-----------------------------
Confidence 1112234445555544433222221 123344444444444433211111
Q ss_pred CCccccccCcCCCCCCCCCCCCcccccccccccceeccccccccccCCCCCCCCCCcccccEEEEccCCCccccCCchhH
Q 000447 883 PQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIV 962 (1497)
Q Consensus 883 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~i~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l 962 (1497)
.....+++|+.|++++|......... ...+++|+.|++.+|+- ....| ..+
T Consensus 350 -----------------------~~l~~~~~L~~L~Ls~n~l~~~~p~~----~~~~~~L~~L~l~~n~l-~~~~p-~~~ 400 (968)
T PLN00113 350 -----------------------KNLGKHNNLTVLDLSTNNLTGEIPEG----LCSSGNLFKLILFSNSL-EGEIP-KSL 400 (968)
T ss_pred -----------------------hHHhCCCCCcEEECCCCeeEeeCChh----HhCcCCCCEEECcCCEe-cccCC-HHH
Confidence 11122455666666665543221111 11345667777766543 22222 245
Q ss_pred hhccccceEEEeeccccceeeccccCcccccceecCccceeeccCCCccccccCCcccccCCCcceEEeecCCceeeecc
Q 000447 963 RNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTS 1042 (1497)
Q Consensus 963 ~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~ 1042 (1497)
..+++|+.|++++|.--..++. ....+++|+.|+++++.-...++... ..+++|+.|++.+|.-...+|.
T Consensus 401 ~~~~~L~~L~L~~n~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGELPS--------EFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred hCCCCCCEEECcCCEeeeECCh--------hHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCc
Confidence 6677777777777652212111 11235667777777664333322211 1357777777777764433321
Q ss_pred ccccCCCchhhhccccccccchhhhhhhcccceeeeecCcccccccccCCCCcccccccEEEEecCCCCcccHHHHhhcC
Q 000447 1043 EFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFK 1122 (1497)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~ 1122 (1497)
. ...++|+.|++++|.+....+..+. .+++|+.|++++|.+....+..+..++
T Consensus 471 ~-------------------------~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 471 S-------------------------FGSKRLENLDLSRNQFSGAVPRKLG--SLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred c-------------------------cccccceEEECcCCccCCccChhhh--hhhccCEEECcCCcceeeCChHHcCcc
Confidence 0 0134677777777776644333322 367778888888876554445667777
Q ss_pred CccEEEEEccceEEeecchhhhhhccccccccEEEeCCCCCCchhhccCCcchhhccccceeEeeccCCccccCCCCccc
Q 000447 1123 NLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSF 1202 (1497)
Q Consensus 1123 sL~~L~I~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l 1202 (1497)
+|++|+|+.|.++...+. ....+++|+.|++++|.-...+ |..+..+++|+.|++++|+-...+|.. +.+
T Consensus 524 ~L~~L~Ls~N~l~~~~p~-----~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~ 593 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPA-----SFSEMPVLSQLDLSQNQLSGEI----PKNLGNVESLVQVNISHNHLHGSLPST-GAF 593 (968)
T ss_pred CCCEEECCCCcccccCCh-----hHhCcccCCEEECCCCcccccC----ChhHhcCcccCEEeccCCcceeeCCCc-chh
Confidence 888888876666544321 2345677777777776543333 455666777777777777766555543 334
Q ss_pred CcccEEEEec
Q 000447 1203 RNLITLEVWY 1212 (1497)
Q Consensus 1203 ~sL~~L~I~~ 1212 (1497)
.++....+.+
T Consensus 594 ~~~~~~~~~~ 603 (968)
T PLN00113 594 LAINASAVAG 603 (968)
T ss_pred cccChhhhcC
Confidence 4443333333
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=8.4e-30 Score=346.62 Aligned_cols=510 Identities=19% Similarity=0.163 Sum_probs=343.7
Q ss_pred ccccceEEEcccCCCC-CCCCcc--CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCc-cCCccCCCCCCCC
Q 000447 486 MLKNCIAIFLHDINTG-ELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFCHLPNLE 561 (1497)
Q Consensus 486 ~~~~~~~lsl~~~~~~-~lp~~~--~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr 561 (1497)
.+..++.+.+.+|.+. .+|..+ .+++|++|++++|.+...+|. ..+++|++|+|++|.+. .+|..++++++|+
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 3568999999999875 788765 799999999999998877885 45899999999999997 7899999999999
Q ss_pred EEeccCCCCCC-C-cccCCCCCCcEEEeecCCCc-ccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCC
Q 000447 562 SLCLDQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1497)
Q Consensus 562 ~L~L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~l~-~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~ 638 (1497)
+|+|++|.+.. + ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 246 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN 246 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCc
Confidence 99999998853 3 78999999999999999877 68999999999999999999866678877 899999999999999
Q ss_pred cccccccccccccCccChhhcCCCCCCcEEEeeccCCCCCCcccccccccceeEEeccccCCCCCCCCcceeeccCCCcc
Q 000447 639 SVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNI 718 (1497)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 718 (1497)
.+. ...+..++++++|+.|+++.|......
T Consensus 247 ~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~--------------------------------------- 276 (968)
T PLN00113 247 NLT-----------GPIPSSLGNLKNLQYLFLYQNKLSGPI--------------------------------------- 276 (968)
T ss_pred eec-----------cccChhHhCCCCCCEEECcCCeeeccC---------------------------------------
Confidence 876 234567889999999999876532100
Q ss_pred chHHHHHhhcccccccccccCCccccccccCcCCCcccccccccccCceEEeccCccccccCcccccceeeccccccchh
Q 000447 719 YLDEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEK 798 (1497)
Q Consensus 719 ~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~f~~L~~L~L~~~~~l~~ 798 (1497)
...+ ..+++|++|++++|.....++.. ...+++|+.|.+.++.-...
T Consensus 277 --------------------------p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-----~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 277 --------------------------PPSI--FSLQKLISLDLSDNSLSGEIPEL-----VIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred --------------------------chhH--hhccCcCEEECcCCeeccCCChh-----HcCCCCCcEEECCCCccCCc
Confidence 0011 24567778888777533222221 23578999999987643322
Q ss_pred hhcCCCCcccccceeEEEEeeCCCCCCCCchhhhcCCCCccEEEeccCccchhhhccCCCCCcCCCccccccccccceEe
Q 000447 799 ICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLI 878 (1497)
Q Consensus 799 ~~~~~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 878 (1497)
. +.....+++|+.|++.+|.-...+| ..+..+++|+.|++++|.-...++. ....+++|+.|.
T Consensus 324 ~---~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p~------------~~~~~~~L~~L~ 386 (968)
T PLN00113 324 I---PVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIPE------------GLCSSGNLFKLI 386 (968)
T ss_pred C---ChhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCCh------------hHhCcCCCCEEE
Confidence 2 2234568999999999986544554 3567889999999988753322221 112234555555
Q ss_pred ccCCCCccccccCcCCCCCCCCCCCCcccccccccccceeccccccccccCCCCCCCCCCcccccEEEEccCCCccccCC
Q 000447 879 LKFLPQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFP 958 (1497)
Q Consensus 879 L~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~i~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 958 (1497)
+.++.-...++ .... .+++|+.|++.+|. ++...|
T Consensus 387 l~~n~l~~~~p----------------~~~~----------------------------~~~~L~~L~L~~n~-l~~~~p 421 (968)
T PLN00113 387 LFSNSLEGEIP----------------KSLG----------------------------ACRSLRRVRLQDNS-FSGELP 421 (968)
T ss_pred CcCCEecccCC----------------HHHh----------------------------CCCCCCEEECcCCE-eeeECC
Confidence 55443211110 0111 34455555555543 222222
Q ss_pred chhHhhccccceEEEeeccccceeeccccCcccccceecCccceeeccCCCccccccCCcccccCCCcceEEeecCCcee
Q 000447 959 SSIVRNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVK 1038 (1497)
Q Consensus 959 ~~~l~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~ 1038 (1497)
..+..+++|+.|++++|. +...... ....+++|+.|++++|.....++... ..++|+.|++++|.-..
T Consensus 422 -~~~~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 422 -SEFTKLPLVYFLDISNNN-LQGRINS-------RKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSG 489 (968)
T ss_pred -hhHhcCCCCCEEECcCCc-ccCccCh-------hhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCC
Confidence 234556666666666554 2221110 11135666666666665544444322 23677788877765332
Q ss_pred eeccccccCCCchhhhccccccccchhhhhhhcccceeeeecCcccccccccCCCCcccccccEEEEecCCCCcccHHHH
Q 000447 1039 IFTSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFL 1118 (1497)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l 1118 (1497)
.++.. -..+++|+.|++++|.+....+..+ ..+++|++|++++|.++......+
T Consensus 490 ~~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 490 AVPRK------------------------LGSLSELMQLKLSENKLSGEIPDEL--SSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred ccChh------------------------hhhhhccCEEECcCCcceeeCChHH--cCccCCCEEECCCCcccccCChhH
Confidence 22110 0225678888998888775444333 237899999999999877666788
Q ss_pred hhcCCccEEEEEccceEEeecchhhhhhccccccccEEEeCCCCCCchhhccCCcchhhccccceeEeeccCCc
Q 000447 1119 QYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNL 1192 (1497)
Q Consensus 1119 ~~l~sL~~L~I~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L 1192 (1497)
..+++|+.|++++|.+....+ .....+++|+.|++++|+-...++.. +.+.++....+.+.+.+
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p-----~~l~~l~~L~~l~ls~N~l~~~~p~~-----~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIP-----KNLGNVESLVQVNISHNHLHGSLPST-----GAFLAINASAVAGNIDL 607 (968)
T ss_pred hCcccCCEEECCCCcccccCC-----hhHhcCcccCEEeccCCcceeeCCCc-----chhcccChhhhcCCccc
Confidence 999999999999777764433 13456899999999999755555321 22334444444554433
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=5e-22 Score=237.54 Aligned_cols=142 Identities=28% Similarity=0.365 Sum_probs=115.3
Q ss_pred EcccCCCCCCCCcc-CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCCCCC
Q 000447 494 FLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGD 572 (1497)
Q Consensus 494 sl~~~~~~~lp~~~-~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~ 572 (1497)
..+++...-+|..+ ....+..|++..|.+ ...|-.+..+.-+|+.|++++|.+...|..|..+.+|+.|+++.|.|..
T Consensus 4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~~-l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEALQILNLRRNSL-LSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS 82 (1081)
T ss_pred ccccccCcccchhhccHHHHHhhhcccccc-ccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh
Confidence 34455566666654 344477777777754 3445555566666999999999999999999999999999999999977
Q ss_pred C-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCC
Q 000447 573 I-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1497)
Q Consensus 573 l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~ 638 (1497)
+ .+++++.+|++|+|.+|.+..+|.++..+++|++|++++|. ...+|.- +..++.+..+..++|
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred CchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc
Confidence 6 78999999999999999999999999999999999999987 7778876 777888888777766
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=2.7e-19 Score=242.95 Aligned_cols=301 Identities=22% Similarity=0.282 Sum_probs=192.0
Q ss_pred cccccceeccccccccccCCCCCCCCCCcccccEEEEccCCCccccCCchhHhhccccceEEEeeccccceeeccccCcc
Q 000447 911 FPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEE 990 (1497)
Q Consensus 911 ~p~L~~L~l~~~~~~~i~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C~~L~~l~~~~~~~~ 990 (1497)
+.+|+.|++.++.+..+|... ..+++|+.|++++|.+++.++. +..+++|+.|++++|..+..++..
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~-----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~s----- 676 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGV-----HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSS----- 676 (1153)
T ss_pred ccCCcEEECcCcccccccccc-----ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchh-----
Confidence 578999999999888888753 2588999999999998888753 567899999999999998877542
Q ss_pred cccceecCccceeeccCCCccccccCCcccccCCCcceEEeecCCceeeeccccccCCCchhhhccccccccchhhhhhh
Q 000447 991 ATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKV 1070 (1497)
Q Consensus 991 ~~~~~~lp~L~~L~i~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1497)
...+++|+.|++++|.+++.+|... .+++|+.|.+.+|..++.+|. .
T Consensus 677 ---i~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~---------------------------~ 723 (1153)
T PLN03210 677 ---IQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD---------------------------I 723 (1153)
T ss_pred ---hhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCcccccc---------------------------c
Confidence 2348899999999999999998754 468999999999998876632 1
Q ss_pred cccceeeeecCcccccccccCCCCcccccccEEEEecCCCCcccHHHHhhcCCccEEEEEccceEEeecchhhhhhcccc
Q 000447 1071 GSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKL 1150 (1497)
Q Consensus 1071 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~sL~~L~I~c~~l~~~~~~~~~~~~~~~l 1150 (1497)
+.+|++|+++++.+..++... .+++|+.|.+.+|....+... +..+ .. .....+
T Consensus 724 ~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~-~~~l----------------~~-----~~~~~~ 777 (1153)
T PLN03210 724 STNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWER-VQPL----------------TP-----LMTMLS 777 (1153)
T ss_pred cCCcCeeecCCCccccccccc----cccccccccccccchhhcccc-cccc----------------ch-----hhhhcc
Confidence 457888888888777665432 367777777776552221100 0000 00 001123
Q ss_pred ccccEEEeCCCCCCchhhccCCcchhhccccceeEeeccCCccccCCCCcccCcccEEEEecCCCCccccchhhhhcccc
Q 000447 1151 THIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQ 1230 (1497)
Q Consensus 1151 ~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~ 1230 (1497)
++|+.|++++|+.+..+ |..++++++|+.|+|.+|.+++.+|... .+++|++|++++|.++..++. ..++
T Consensus 778 ~sL~~L~Ls~n~~l~~l----P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~n 847 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTN 847 (1153)
T ss_pred ccchheeCCCCCCcccc----ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccc
Confidence 45556666665555554 3334555666666666666666655543 456666666666665555432 1245
Q ss_pred ccEEEEccCccchhhhccCCCccccccccccccccccccccccceecCCcccccCCCccEEEEccCCCCcccC
Q 000447 1231 LMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIFS 1303 (1497)
Q Consensus 1231 L~~L~I~~C~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~ 1303 (1497)
|+.|+++++. ++++|.. ...+++|+.|.+.+|++|++++.. ...+++|+.+++.+|++|+.++
T Consensus 848 L~~L~Ls~n~-i~~iP~s-------i~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 848 ISDLNLSRTG-IEEVPWW-------IEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCEeECCCCC-CccChHH-------HhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCccccccc
Confidence 5566665542 4443321 123556666666666666666554 2245666666666666665443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=2.1e-20 Score=211.87 Aligned_cols=153 Identities=20% Similarity=0.310 Sum_probs=109.6
Q ss_pred CCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCC--cccCCCCCCcEEE
Q 000447 509 YPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILS 586 (1497)
Q Consensus 509 ~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~ 586 (1497)
.+..++|++++|.+ ..+...+|.++++|+.+.+.+|.++.+|.......||+.|+|.+|.|..+ +.+..+..||.||
T Consensus 77 p~~t~~LdlsnNkl-~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKL-SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ccceeeeecccccc-ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 45667788887765 44555567888888888888888888887766777788888888888777 6677788888888
Q ss_pred eecCCCcccchh-hcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChhhcCCCCCC
Q 000447 587 LCCSDIEQLPRE-IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHL 665 (1497)
Q Consensus 587 Ls~~~l~~LP~~-i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 665 (1497)
||.|.|.++|.. +..-.++++|+|++|. ++.+-.+.+..+.+|-+|.++.|.++ ......+++|++|
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit-----------tLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT-----------TLPQRSFKRLPKL 223 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccc-----------ccCHHHhhhcchh
Confidence 888888777643 5555677788887776 77776666777777777777777665 3334556666666
Q ss_pred cEEEeeccC
Q 000447 666 TTLEIHIRD 674 (1497)
Q Consensus 666 ~~L~l~~~~ 674 (1497)
+.|++..|.
T Consensus 224 ~~LdLnrN~ 232 (873)
T KOG4194|consen 224 ESLDLNRNR 232 (873)
T ss_pred hhhhccccc
Confidence 666665543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=3.1e-19 Score=202.46 Aligned_cols=349 Identities=21% Similarity=0.286 Sum_probs=237.6
Q ss_pred cccceEEEcccCCCCCCCCc--cCCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCC-ccCCCCCCCCEE
Q 000447 487 LKNCIAIFLHDINTGELPEG--LEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLP-SSFCHLPNLESL 563 (1497)
Q Consensus 487 ~~~~~~lsl~~~~~~~lp~~--~~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L 563 (1497)
....+.+.+++|.+..+... .++++|+.+.+..|.. ..+|... ....+|..|+|.+|.|.++- +++..+..||.|
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 34567889999988877654 3899999999998876 6788732 44566999999999998764 568889999999
Q ss_pred eccCCCCCCC--cccCCCCCCcEEEeecCCCcccch-hhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcc
Q 000447 564 CLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSV 640 (1497)
Q Consensus 564 ~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~LP~-~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 640 (1497)
||+.|.|+.+ +++.+=.++++|+|++|.|+.+-. .+..|.+|-+|.|+.|+ ++.+|...+.+|.+|+.|++..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce
Confidence 9999999887 788888999999999999997754 48899999999999988 9999999888899999999999887
Q ss_pred cccccccccccCccChhhcCCCCCCcEEEeeccCCCCCCcccccccccceeEEeccccCCCCCCCCcceeeccCCCccch
Q 000447 641 EWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYL 720 (1497)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 720 (1497)
. ....-.++.|.+|+.|.+..|++..+.++.+.
T Consensus 234 r-----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy------------------------------------ 266 (873)
T KOG4194|consen 234 R-----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY------------------------------------ 266 (873)
T ss_pred e-----------eehhhhhcCchhhhhhhhhhcCcccccCccee------------------------------------
Confidence 5 22245678889999999998888777665421
Q ss_pred HHHHHhhcccccccccccCCccccccccCcCCCcccccccccccCceEEeccCccccccCcccccceeeccccccchhhh
Q 000447 721 DEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKIC 800 (1497)
Q Consensus 721 ~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~f~~L~~L~L~~~~~l~~~~ 800 (1497)
.+.++++|+|.......-.-.++ -+++.|+.|+++.|.- ..+ ++ ..|
T Consensus 267 -----~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI-~ri------------------h~------d~W- 313 (873)
T KOG4194|consen 267 -----GLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAI-QRI------------------HI------DSW- 313 (873)
T ss_pred -----eecccceeecccchhhhhhcccc--cccchhhhhccchhhh-hee------------------ec------chh-
Confidence 23445555554332111111112 3678888888887652 111 11 011
Q ss_pred cCCCCcccccceeEEEEeeCCCCCCCCchhhhcCCCCccEEEeccCccchhhhccCCCCCcCCCccccccccccceEecc
Q 000447 801 DGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILK 880 (1497)
Q Consensus 801 ~~~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 880 (1497)
...++|++|+|++ +.++.+++ ..+..|..|++|.++++. +..+..
T Consensus 314 ------sftqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~Ns-i~~l~e-------------------------- 358 (873)
T KOG4194|consen 314 ------SFTQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSHNS-IDHLAE-------------------------- 358 (873)
T ss_pred ------hhcccceeEeccc-cccccCCh-hHHHHHHHhhhhcccccc-hHHHHh--------------------------
Confidence 1356777777777 46666655 456667777777777632 222211
Q ss_pred CCCCccccccCcCCCCCCCCCCCCcccccccccccceeccccccccccCCCCCCCCCCcccccEEEEccCCCccccCCch
Q 000447 881 FLPQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSS 960 (1497)
Q Consensus 881 ~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~i~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~ 960 (1497)
.....+.+|++|+++++.+.-.-.+.. ..+.++++|++|.+.+ ++++.+ +..
T Consensus 359 -------------------------~af~~lssL~~LdLr~N~ls~~IEDaa-~~f~gl~~LrkL~l~g-Nqlk~I-~kr 410 (873)
T KOG4194|consen 359 -------------------------GAFVGLSSLHKLDLRSNELSWCIEDAA-VAFNGLPSLRKLRLTG-NQLKSI-PKR 410 (873)
T ss_pred -------------------------hHHHHhhhhhhhcCcCCeEEEEEecch-hhhccchhhhheeecC-ceeeec-chh
Confidence 011124566666666665332222211 1223467777777776 556665 334
Q ss_pred hHhhccccceEEEeecccccee
Q 000447 961 IVRNFVQLQHLEICHCTVLEEI 982 (1497)
Q Consensus 961 ~l~~l~~L~~L~I~~C~~L~~l 982 (1497)
.+..+++||+|++.+.. +.++
T Consensus 411 Afsgl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNA-IASI 431 (873)
T ss_pred hhccCcccceecCCCCc-ceee
Confidence 56777777777777665 4444
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-20 Score=224.29 Aligned_cols=166 Identities=25% Similarity=0.288 Sum_probs=127.6
Q ss_pred ceEEEcccCCCCCCCCcc--CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccC
Q 000447 490 CIAIFLHDINTGELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQ 567 (1497)
Q Consensus 490 ~~~lsl~~~~~~~lp~~~--~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~ 567 (1497)
+.++.+..|..-..|-.+ ++-+|++|++++|.. ...|..+ ..+.+|+.|.++.|.|..+|.++.++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc-ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 455556555555544222 455699999998876 5677765 889999999999999999999999999999999999
Q ss_pred CCCCCC-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccc
Q 000447 568 CILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEG 646 (1497)
Q Consensus 568 ~~l~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 646 (1497)
|.+..+ .++..+++|++||+++|.+...|.-+..++.+..++.++|..+..++. .. .+++++..+.+.
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~----- 169 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG----- 169 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc-----
Confidence 998776 799999999999999999999999999999999999999854554443 22 667777666554
Q ss_pred cccccCccChhhcCCCCCCcEEEeeccCCC
Q 000447 647 LNLERNNASLQELSILSHLTTLEIHIRDAV 676 (1497)
Q Consensus 647 ~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 676 (1497)
...+.++..+++ .|++..|...
T Consensus 170 ------~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 170 ------GSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred ------cchhcchhhhhe--eeecccchhh
Confidence 223345555555 5777665543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.8e-21 Score=211.51 Aligned_cols=174 Identities=27% Similarity=0.348 Sum_probs=120.1
Q ss_pred ceEEEcccCCCCCCCCcc-CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCC
Q 000447 490 CIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQC 568 (1497)
Q Consensus 490 ~~~lsl~~~~~~~lp~~~-~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~ 568 (1497)
+..+.+..|.+..+.++. ++..|.+|.++.|.. ..+|..+ +.+..+..|+.++|.+..+|+.++.+.+|+.|+.++|
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l-~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL-SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchh-hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 344555666665555544 566777777777765 4556554 6677777777777777777777777777777777777
Q ss_pred CCCCC-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCccccccccc
Q 000447 569 ILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGL 647 (1497)
Q Consensus 569 ~l~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 647 (1497)
.+..+ ++|+.+..|..|+..+|++..+|.+++.+.+|..|++.+|. ++.+|++.+ +++.|++|+...|-+.
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~------ 196 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLE------ 196 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhh------
Confidence 77665 77777777777777777777777777777777777777766 777777633 3777777776655443
Q ss_pred ccccCccChhhcCCCCCCcEEEeeccCCCCCC
Q 000447 648 NLERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1497)
Q Consensus 648 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 679 (1497)
..+++++.+.+|..|++..|.+..+|
T Consensus 197 ------tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 197 ------TLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred ------cCChhhcchhhhHHHHhhhcccccCC
Confidence 44567777777777777666665554
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=1.9e-20 Score=212.57 Aligned_cols=367 Identities=20% Similarity=0.252 Sum_probs=235.7
Q ss_pred CCccEEEcCCCCCC-CCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCC-cccCCCCCCcEEEe
Q 000447 510 PHLTSLCMNPKDPF-LHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSL 587 (1497)
Q Consensus 510 ~~Lr~L~L~~~~~~-~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L 587 (1497)
+-.|-.++++|.++ ..+|.++ ..|+.++.|.|..+.+..+|+.++.|.+|+.|.+.+|++..+ ..+..|+.||.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 44566677777776 4567665 778888888888888888888888888888888888887766 77888888888888
Q ss_pred ecCCCc--ccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChhhcCCCCCC
Q 000447 588 CCSDIE--QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHL 665 (1497)
Q Consensus 588 s~~~l~--~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 665 (1497)
+.|+++ .+|..|-+|..|.+|||++|+ +++.|.+ +..-+++-+|++++|.+. ...-.-+-+|+.|
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Ie-----------tIPn~lfinLtDL 152 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIE-----------TIPNSLFINLTDL 152 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccc-----------cCCchHHHhhHhH
Confidence 888776 678888888888888888877 8888887 788888888888888775 2222445667777
Q ss_pred cEEEeeccCCCCCCcccccccccceeEEeccccCCCCCCCCcceeeccCCCccchHHHHHhhcccccccccccCCccccc
Q 000447 666 TTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLDEVPGIENVL 745 (1497)
Q Consensus 666 ~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l 745 (1497)
-.|+++.|....+|+.+ ..+.+|+.|.|++.+.
T Consensus 153 LfLDLS~NrLe~LPPQ~------------------------------------------RRL~~LqtL~Ls~NPL----- 185 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQI------------------------------------------RRLSMLQTLKLSNNPL----- 185 (1255)
T ss_pred hhhccccchhhhcCHHH------------------------------------------HHHhhhhhhhcCCChh-----
Confidence 78888888777766543 1244455666665432
Q ss_pred cccCcCCCc---ccccccccccCceEEeccCccccccCcccccceeeccccccchhhhcCCCCcccccceeEEEEeeCCC
Q 000447 746 YELDRKGLP---ALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIKVRNCDK 822 (1497)
Q Consensus 746 ~~l~~~~l~---~L~~L~L~~~~~l~~i~~~~~~~~~~~f~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~L~~C~~ 822 (1497)
..+...++| +|..|++++..... .. -+.....+.||..++++. ++
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl-----------~N--------------------~Ptsld~l~NL~dvDlS~-N~ 233 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTL-----------DN--------------------IPTSLDDLHNLRDVDLSE-NN 233 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchh-----------hc--------------------CCCchhhhhhhhhccccc-cC
Confidence 122223333 33334443332110 00 122345577788888764 56
Q ss_pred CCCCCchhhhcCCCCccEEEeccCccchhhhccCCCCCcCCCccccccccccceEeccCCCCccccccCcCCCCCCCCCC
Q 000447 823 LKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSDELDTPK 902 (1497)
Q Consensus 823 L~~l~~~~~~~~L~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~~~~~~~ 902 (1497)
+..+|. .+-++++|+.|+++++. ++++.. ......+|++|+++... |+.++.
T Consensus 234 Lp~vPe--cly~l~~LrrLNLS~N~-iteL~~------------~~~~W~~lEtLNlSrNQ-Lt~LP~------------ 285 (1255)
T KOG0444|consen 234 LPIVPE--CLYKLRNLRRLNLSGNK-ITELNM------------TEGEWENLETLNLSRNQ-LTVLPD------------ 285 (1255)
T ss_pred CCcchH--HHhhhhhhheeccCcCc-eeeeec------------cHHHHhhhhhhccccch-hccchH------------
Confidence 666654 35578888888888754 333322 22345677888777632 333221
Q ss_pred CCcccccccccccceeccccccccccCCCCCCCCCCcccccEEEEccCCCccccCCchhHhhccccceEEEeecccccee
Q 000447 903 PLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEI 982 (1497)
Q Consensus 903 ~~~~~~~~~p~L~~L~l~~~~~~~i~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C~~L~~l 982 (1497)
...-++.|++|.+.++.+.- ...++....+.+|+.+...+ ++|.-+ | .++..|+.|+.|.++... |..+
T Consensus 286 ----avcKL~kL~kLy~n~NkL~F---eGiPSGIGKL~~Levf~aan-N~LElV-P-EglcRC~kL~kL~L~~Nr-LiTL 354 (1255)
T KOG0444|consen 286 ----AVCKLTKLTKLYANNNKLTF---EGIPSGIGKLIQLEVFHAAN-NKLELV-P-EGLCRCVKLQKLKLDHNR-LITL 354 (1255)
T ss_pred ----HHhhhHHHHHHHhccCcccc---cCCccchhhhhhhHHHHhhc-cccccC-c-hhhhhhHHHHHhcccccc-eeec
Confidence 23346788888887765221 11111122344555555444 445544 3 467888899999887554 5545
Q ss_pred eccccCcccccceecCccceeeccCCCccccccC
Q 000447 983 VSKERGEEATATFVFPKVTYLKLCNLSELITFYP 1016 (1497)
Q Consensus 983 ~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~~~~ 1016 (1497)
+. .+..+|.|+.|++++.|+|.--|.
T Consensus 355 Pe--------aIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 355 PE--------AIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hh--------hhhhcCCcceeeccCCcCccCCCC
Confidence 32 234588899999999999875443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=3.4e-21 Score=209.37 Aligned_cols=156 Identities=26% Similarity=0.370 Sum_probs=105.8
Q ss_pred CCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCC-cccCCCCCCcEEEee
Q 000447 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSLC 588 (1497)
Q Consensus 510 ~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls 588 (1497)
..+..|++++|......++ ..++..|.||++++|.+..+|.+|+.+..+..|+.++|++..+ +.++.+..|+.|+.+
T Consensus 45 v~l~~lils~N~l~~l~~d--l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRED--LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCchhhccHh--hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 4456667777765333333 3677777777777777777777777777777777777777666 677777777777777
Q ss_pred cCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChhhcCCCCCCcEE
Q 000447 589 CSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTL 668 (1497)
Q Consensus 589 ~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 668 (1497)
+|.+.++|++|+.+..|..|+..+|+ +..+|++ ++++.+|..|++.+|.+. ..+...-.++.|++|
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~------------~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK------------ALPENHIAMKRLKHL 188 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh------------hCCHHHHHHHHHHhc
Confidence 77777777777777777777777766 6777776 677777777777666554 222333336666666
Q ss_pred EeeccCCCCCCcc
Q 000447 669 EIHIRDAVILPKG 681 (1497)
Q Consensus 669 ~l~~~~~~~~~~~ 681 (1497)
+...|....+|++
T Consensus 189 d~~~N~L~tlP~~ 201 (565)
T KOG0472|consen 189 DCNSNLLETLPPE 201 (565)
T ss_pred ccchhhhhcCChh
Confidence 6666655555543
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=4.8e-19 Score=201.29 Aligned_cols=196 Identities=23% Similarity=0.301 Sum_probs=156.7
Q ss_pred ccccceEEEcccCCCCCCCCcc-CCCCccEEEcCCCCCC-CCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEE
Q 000447 486 MLKNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPF-LHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESL 563 (1497)
Q Consensus 486 ~~~~~~~lsl~~~~~~~lp~~~-~~~~Lr~L~L~~~~~~-~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L 563 (1497)
...++.|+++..|.+..+...+ +++.||++++..|+.. ..+|.++| +++.|.+|||++|.+.+.|..+.+.+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 3567889999999877776555 8999999999988753 56899875 6999999999999999999999999999999
Q ss_pred eccCCCCCCC--cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCccc
Q 000447 564 CLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1497)
Q Consensus 564 ~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1497)
+|++|+|..| +-+-+|+.|-+||||+|++..||..+.+|.+|++|+|++|. +..+--..+-.+++|++|.+++..-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch
Confidence 9999999888 56889999999999999999999999999999999999987 33222111445778888888876533
Q ss_pred ccccccccccCccChhhcCCCCCCcEEEeeccCCCCCCccc-ccccccceeEE
Q 000447 642 WEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGL-FSQKLARYKIL 693 (1497)
Q Consensus 642 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~ 693 (1497)
....+..+..|.||+.++++.|....+|.-+ ...+|.+|++.
T Consensus 211 ----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 211 ----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred ----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccC
Confidence 1234566777778888888888877777654 44555555543
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.3e-15 Score=147.32 Aligned_cols=166 Identities=27% Similarity=0.439 Sum_probs=119.0
Q ss_pred CCCCCccCCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCC-cccCCC
Q 000447 501 GELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNL 579 (1497)
Q Consensus 501 ~~lp~~~~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L 579 (1497)
.++|..+.+++...|.++.|.+ ..+|.++ ..+++|.+|++++|++.++|.+|+.+..||.|++.-|++..+ ..||.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl-~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKL-TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCce-eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 3455555666667777776665 3455554 677777777777777777777777777777777777776555 677777
Q ss_pred CCCcEEEeecCCCc--ccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChh
Q 000447 580 KNLEILSLCCSDIE--QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQ 657 (1497)
Q Consensus 580 ~~L~~L~Ls~~~l~--~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 657 (1497)
+-|++|||.+|++. .+|..+-.|+.|+-|.++.|. ...+|++ +++|++||.|.+.+|.+. ..+.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lpk 167 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLPK 167 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCcH
Confidence 77777777777665 677777777777777777766 6677777 777888887777776553 3456
Q ss_pred hcCCCCCCcEEEeeccCCCCCCccc
Q 000447 658 ELSILSHLTTLEIHIRDAVILPKGL 682 (1497)
Q Consensus 658 ~L~~L~~L~~L~l~~~~~~~~~~~~ 682 (1497)
+++.++.|+.|+|.+|..+.+|.++
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhh
Confidence 7777777888888877777777654
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=4.1e-15 Score=143.91 Aligned_cols=152 Identities=28% Similarity=0.436 Sum_probs=139.3
Q ss_pred ccccceEEEcccCCCCCCCCcc-CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEe
Q 000447 486 MLKNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLC 564 (1497)
Q Consensus 486 ~~~~~~~lsl~~~~~~~lp~~~-~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~ 564 (1497)
-...++++.++.|.+..+|..+ ++.+|++|++++|.+ ..+|.++ +++++||.|+++-|.+..+|..|+.++-|++||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 3566889999999999999988 899999999999887 6788875 999999999999999999999999999999999
Q ss_pred ccCCCCCC--C-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCccc
Q 000447 565 LDQCILGD--I-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1497)
Q Consensus 565 L~~~~l~~--l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1497)
|.+|++.. + ..|..++-|+-|.|+.|.++.+|.++++|++||.|.+..|. +-.+|.+ ++.|+.|++|.+.+|.+.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee
Confidence 99998853 3 67888999999999999999999999999999999999988 7789999 999999999999999876
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=1.2e-10 Score=158.30 Aligned_cols=294 Identities=17% Similarity=0.196 Sum_probs=181.1
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHh
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQL 215 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l 215 (1497)
...+++-|....+++-+ ....+++.|+|++|.||||++.++.+. ++.++|+++... .++..+...++..+
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34466777765555433 346789999999999999999998853 236899999754 46666767777666
Q ss_pred CCCCCC--------------CChHHHHHHHHHHHhc-CCeEEEEEcCCCChh--h-hhhccCCCCCCCCCeEEEEEeCch
Q 000447 216 GLNFCE--------------ESDSERIMMLCNRLKR-EKKILVILDDIWTSL--D-LERTGIPFGDVHRGCKILVTSRRR 277 (1497)
Q Consensus 216 ~~~~~~--------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~-~~~l~~~l~~~~~gs~ilvTTR~~ 277 (1497)
+..... .........+...+.+ +.+++|||||+...+ . .+.+...+.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421111 1122334445555544 689999999986542 1 122222222334567898999985
Q ss_pred hhhhh-cCc-ccceEEec----CCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHH
Q 000447 278 DVLVS-EMH-CQNNYCVS----VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWK 351 (1497)
Q Consensus 278 ~v~~~-~~~-~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~ 351 (1497)
.-... ... ......++ +|+.+|+.++|....|.... .+...+|.+.++|+|+++..++..++...... .
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~-~ 237 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL-H 237 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch-h
Confidence 32211 011 12244555 89999999999887764332 23467899999999999999988776543210 1
Q ss_pred HHHHHHHhhccCccchHHHHHhHHHHHhccCCccchhhhhhhhcccCCCCCcchhhHhhhccccccccchhhHHHHHHHH
Q 000447 352 KALQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRV 431 (1497)
Q Consensus 352 ~~l~~l~~~~~~~~~~~~~~~~~l~lsy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~e~~~~~~ 431 (1497)
.....+. .... ..+......-.|+.||++ .++.++..|+++. +.. ++...-. | . ++ .
T Consensus 238 ~~~~~~~--~~~~---~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~---~~~-~l~~~l~--~---~----~~----~ 294 (903)
T PRK04841 238 DSARRLA--GINA---SHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRS---MND-ALIVRVT--G---E----EN----G 294 (903)
T ss_pred hhhHhhc--CCCc---hhHHHHHHHHHHhcCCHH-HHHHHHHhccccc---CCH-HHHHHHc--C---C----Cc----H
Confidence 1111111 0001 113312234457899998 7999999999975 222 2222111 1 0 01 1
Q ss_pred HHHHHHHhhcccccc-CC-CcCceeehhhHHHHHHHHh
Q 000447 432 YALVRGLKDTCLLHD-DD-TADWFSMLGFVRNVAISIA 467 (1497)
Q Consensus 432 ~~~l~~L~~~~ll~~-~~-~~~~~~mHdlv~d~a~~~~ 467 (1497)
.+.+++|.+++++.. .+ ....|+.|++++++++...
T Consensus 295 ~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 295 QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 234888999998653 33 3458999999999998764
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=6.1e-11 Score=149.34 Aligned_cols=156 Identities=23% Similarity=0.282 Sum_probs=105.2
Q ss_pred eEEEcccCCCCCCCCccCCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCCC
Q 000447 491 IAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCIL 570 (1497)
Q Consensus 491 ~~lsl~~~~~~~lp~~~~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l 570 (1497)
..+.+..+.+..+|..+ .++|+.|.+..|.+ ..+|. .+++|++|++++|.++.+|.. ..+|+.|++++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~L-t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNL-TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCCcC-CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 45667777777777755 24788888887765 34664 246788888888888877753 35778888888877
Q ss_pred CCCcccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccc
Q 000447 571 GDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650 (1497)
Q Consensus 571 ~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 650 (1497)
..++. -+.+|+.|++++|+++.+|.. +++|++|++++|+ +..+|.. . .+|+.|++++|.+.. +
T Consensus 275 ~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~-L------ 337 (788)
T PRK15387 275 THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS-L------ 337 (788)
T ss_pred hhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc-c------
Confidence 76643 235677888888888888753 4678888888875 6677652 2 356677777776641 0
Q ss_pred cCccChhhcCCCCCCcEEEeeccCCCCCCc
Q 000447 651 RNNASLQELSILSHLTTLEIHIRDAVILPK 680 (1497)
Q Consensus 651 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 680 (1497)
.. -..+|+.|++++|.+..+|.
T Consensus 338 ------P~--lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 338 ------PT--LPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ------cc--cccccceEecCCCccCCCCC
Confidence 11 11467888888877766553
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.24 E-value=2.3e-11 Score=154.41 Aligned_cols=138 Identities=17% Similarity=0.355 Sum_probs=89.9
Q ss_pred cceEEEcccCCCCCCCCccCCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCC
Q 000447 489 NCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQC 568 (1497)
Q Consensus 489 ~~~~lsl~~~~~~~lp~~~~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~ 568 (1497)
+...+.+.++.+..+|..+ .++|+.|++++|.+ ..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L-tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNEL-KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC-CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 3456677776777777654 35677777777765 35666553 467777777777777776554 36777777777
Q ss_pred CCCCC-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCccc
Q 000447 569 ILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1497)
Q Consensus 569 ~l~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1497)
.+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++|+ +..+|.. +. .+|++|++++|.+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc
Confidence 77665 2332 467777777777777776554 467777777765 6666654 22 35666666666554
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.23 E-value=7.8e-13 Score=145.12 Aligned_cols=135 Identities=23% Similarity=0.334 Sum_probs=94.6
Q ss_pred CCCCchhhcCCCCccEEEecCccCccCCc-cCCCCCCCCEEeccCCCCCCC--cccCCCCCCcEEEeec-CCCcccchh-
Q 000447 524 LHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCC-SDIEQLPRE- 598 (1497)
Q Consensus 524 ~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~-~~l~~LP~~- 598 (1497)
..+|.++ -..-..++|..|.|+.+|+ +|+.+++||.|||++|.|+.| ..|..|..|-.|-+.+ |+|+.+|..
T Consensus 59 ~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 59 TEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred ccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 4566543 2345667888888888874 578888888888888888777 6677787777776655 778888876
Q ss_pred hcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChhhcCCCCCCcEEEeecc
Q 000447 599 IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIR 673 (1497)
Q Consensus 599 i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 673 (1497)
++.|..||.|.+.-|. +..++.+.+..|++|..|.+.+|.+. ...-..+..+..++.+.+..+
T Consensus 136 F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q-----------~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQ-----------SICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhh-----------hhccccccchhccchHhhhcC
Confidence 7888888888887776 77777777888888888877777554 112234555555565555433
No 21
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.22 E-value=5.9e-10 Score=135.37 Aligned_cols=294 Identities=21% Similarity=0.200 Sum_probs=191.9
Q ss_pred cccccchHHHHHHHHHHHc-CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHh
Q 000447 138 HEFIESRESILNDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQL 215 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l 215 (1497)
+...+-|.. +++.|. ..+.+.+.|..|+|.|||||+.+.+.... .=..+.|.++.+.. ++..+...++..+
T Consensus 18 ~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHH
Confidence 445566655 455554 35789999999999999999999987432 23578999997654 6788888888888
Q ss_pred CCCCCCCC--------------hHHHHHHHHHHHhc-CCeEEEEEcCCCC---hhhhhhccCCCCCCCCCeEEEEEeCch
Q 000447 216 GLNFCEES--------------DSERIMMLCNRLKR-EKKILVILDDIWT---SLDLERTGIPFGDVHRGCKILVTSRRR 277 (1497)
Q Consensus 216 ~~~~~~~~--------------~~~~~~~l~~~l~~-~k~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~ilvTTR~~ 277 (1497)
+.-.+... .......+...+.+ .++..+||||-.- ..--..+...+.+...+-..|||||.+
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 74433322 22344455555543 4789999999533 322233333334455788999999998
Q ss_pred hhhhh-cC-cccceEEecC----CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHH
Q 000447 278 DVLVS-EM-HCQNNYCVSV----LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWK 351 (1497)
Q Consensus 278 ~v~~~-~~-~~~~~~~l~~----L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~ 351 (1497)
.-... .+ -....++++. ++.+|+-++|....+..-+.. -++.+.+..+|.+-|+..++-.++++...+
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~----~~~~L~~~teGW~~al~L~aLa~~~~~~~~-- 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAA----DLKALYDRTEGWAAALQLIALALRNNTSAE-- 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChH----HHHHHHhhcccHHHHHHHHHHHccCCCcHH--
Confidence 65442 01 1122334443 889999999988765433333 367899999999999999999988443322
Q ss_pred HHHHHHHhhccCccchH-HHHHhHHHHHhccCCccchhhhhhhhcccCCCCCcchhhHhhhccccccccchhhHHHHHHH
Q 000447 352 KALQELRFSARNFTGLE-ALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDR 430 (1497)
Q Consensus 352 ~~l~~l~~~~~~~~~~~-~~~~~~l~lsy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~e~~~~~ 430 (1497)
.....+. +.. .+.....+--++.||++ +|..++-||+++..+ .+|+..-.++ +.
T Consensus 245 q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~----~eL~~~Ltg~-------------~n 299 (894)
T COG2909 245 QSLRGLS-------GAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN----DELCNALTGE-------------EN 299 (894)
T ss_pred HHhhhcc-------chHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh----HHHHHHHhcC-------------Cc
Confidence 1111111 111 12223445556899998 899999999998721 2333322111 12
Q ss_pred HHHHHHHHhhcccccc--CCCcCceeehhhHHHHHHHHhhc
Q 000447 431 VYALVRGLKDTCLLHD--DDTADWFSMLGFVRNVAISIASI 469 (1497)
Q Consensus 431 ~~~~l~~L~~~~ll~~--~~~~~~~~mHdlv~d~a~~~~~~ 469 (1497)
+..++++|.+++|+.. ++....|+.|.++.||.+.--..
T Consensus 300 g~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 300 GQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 3345899999999863 46677999999999999875433
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=2.4e-11 Score=156.57 Aligned_cols=129 Identities=27% Similarity=0.362 Sum_probs=102.9
Q ss_pred cCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCC--CCCC--cccCCCCCCcEEEeecC-CCcccchhhcCCCccC
Q 000447 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI--LGDI--AIIGNLKNLEILSLCCS-DIEQLPREIGELTQLK 606 (1497)
Q Consensus 532 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~--l~~l--~~i~~L~~L~~L~Ls~~-~l~~LP~~i~~L~~L~ 606 (1497)
.+....|.+.+.+|.+..++.+..+ +.|++|-+.++. +..+ ..|..++.|++|||++| .+.+||.+|+.|.+||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3456778888888888777766544 378888888885 5555 34888999999999976 6889999999999999
Q ss_pred EEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChhhcCCCCCCcEEEeeccC
Q 000447 607 LLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRD 674 (1497)
Q Consensus 607 ~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 674 (1497)
+|+++++. +..+|.+ +++|+.|.+|++..+... ......+..|++|++|.+....
T Consensus 599 yL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCC-ccccchH-HHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccc
Confidence 99999987 9999999 999999999999876543 1223455669999999987654
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.13 E-value=1.4e-12 Score=144.56 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=68.1
Q ss_pred cccceeccccccccccCCCCCCCCCCcccccEEEEccCCCccccCCchhHhhccccceEEEeeccccceeeccccCcccc
Q 000447 913 NLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEAT 992 (1497)
Q Consensus 913 ~L~~L~l~~~~~~~i~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~ 992 (1497)
.|++|.+++|..... .+.......+|++++|.+.+|.++++-.-.+....++.|+.|++..|.+++...-...
T Consensus 139 ~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l----- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL----- 211 (483)
T ss_pred ccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH-----
Confidence 456666666652221 1111223367888888888888887665556677788888888888887776532211
Q ss_pred cceecCccceeeccCCCccccccCCcccccCCCcceEEeecCCce
Q 000447 993 ATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKV 1037 (1497)
Q Consensus 993 ~~~~lp~L~~L~i~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L 1037 (1497)
...+|+|++|.++.|+.++.-........+..++++...||..+
T Consensus 212 -a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 212 -AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred -HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 11377888888888877765211111123334444444455443
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.13 E-value=2.2e-10 Score=145.54 Aligned_cols=173 Identities=21% Similarity=0.322 Sum_probs=135.6
Q ss_pred ccccCCCccccccceEEEcccCCCCCCCCccCCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCC
Q 000447 477 ALIEWPNKDMLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH 556 (1497)
Q Consensus 477 ~~~~~~~~~~~~~~~~lsl~~~~~~~lp~~~~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~ 556 (1497)
+...+|. ...+.++.+.+.+|.+..+|... ..+|++|++++|.+ ..+|..+. .+|+.|+|++|.+..+|..+.
T Consensus 189 ~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L-tsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~- 261 (754)
T PRK15370 189 GLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL-TSIPATLP---DTIQEMELSINRITELPERLP- 261 (754)
T ss_pred CcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc-ccCChhhh---ccccEEECcCCccCcCChhHh-
Confidence 3444443 24567999999999999999765 46999999999986 47887653 479999999999999998775
Q ss_pred CCCCCEEeccCCCCCCC-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEe
Q 000447 557 LPNLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL 635 (1497)
Q Consensus 557 L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l 635 (1497)
.+|++|++++|.+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. + .++|+.|++
T Consensus 262 -s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~L 332 (754)
T PRK15370 262 -SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEA 332 (754)
T ss_pred -CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccc
Confidence 5899999999999877 3343 589999999999999987654 479999999987 7788875 3 368999999
Q ss_pred cCCcccccccccccccCccChhhcCCCCCCcEEEeeccCCCCCC
Q 000447 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1497)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 679 (1497)
++|.+.. .+..+ .++|+.|++++|.+..+|
T Consensus 333 s~N~Lt~------------LP~~l--~~sL~~L~Ls~N~L~~LP 362 (754)
T PRK15370 333 GENALTS------------LPASL--PPELQVLDVSKNQITVLP 362 (754)
T ss_pred cCCcccc------------CChhh--cCcccEEECCCCCCCcCC
Confidence 9987751 11222 258999999988776555
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.12 E-value=7.1e-10 Score=139.83 Aligned_cols=245 Identities=20% Similarity=0.152 Sum_probs=160.1
Q ss_pred ccccCCCccccccceEEEcccCCCCCCCCccCCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCC
Q 000447 477 ALIEWPNKDMLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH 556 (1497)
Q Consensus 477 ~~~~~~~~~~~~~~~~lsl~~~~~~~lp~~~~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~ 556 (1497)
....+|. .+...++.|.+.+|.+..+|.. .++|++|++++|.+. .+|.. .++|+.|++++|.+..+|...
T Consensus 212 ~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~Lp~lp-- 281 (788)
T PRK15387 212 GLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLTHLPALP-- 281 (788)
T ss_pred CCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccCc----ccccceeeccCCchhhhhhch--
Confidence 3344443 3445789999999999988864 589999999998764 56642 468899999999998887633
Q ss_pred CCCCCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEec
Q 000447 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLG 636 (1497)
Q Consensus 557 L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~ 636 (1497)
.+|+.|++++|.++.++. .+++|++|++++|+++.+|... .+|+.|++++|. +..+|.. ..+|++|+++
T Consensus 282 -~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p~~Lq~LdLS 350 (788)
T PRK15387 282 -SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----PSGLQELSVS 350 (788)
T ss_pred -hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----ccccceEecC
Confidence 568889999998887754 3578999999999998887633 357778888876 7777752 2578899998
Q ss_pred CCcccccccccccccCccChhhcCCCCCCcEEEeeccCCCCCCcccccccccceeEEeccccCCCCCCCCcceeeccCCC
Q 000447 637 NTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPT 716 (1497)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~ 716 (1497)
+|.+.. ++ . ...+|+.|++++|.+..+|... .+|..+.+.....-.
T Consensus 351 ~N~Ls~-LP-----------~---lp~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~Lt~----------------- 396 (788)
T PRK15387 351 DNQLAS-LP-----------T---LPSELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLTS----------------- 396 (788)
T ss_pred CCccCC-CC-----------C---CCcccceehhhccccccCcccc--cccceEEecCCcccC-----------------
Confidence 887762 11 1 1235667777777776665432 234443332111000
Q ss_pred ccchHHHHHhhcccccccccccCCccccccccCcCCCcccccccccccCceEEeccCccccccCcccccceeeccccc
Q 000447 717 NIYLDEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLI 794 (1497)
Q Consensus 717 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~f~~L~~L~L~~~~ 794 (1497)
.+ ...++|+.|+++++... . ++. ...+|+.|++++|. +..+|... ..+++|+.|.+.+.+
T Consensus 397 ---LP---~l~s~L~~LdLS~N~Ls-s-IP~----l~~~L~~L~Ls~Nq-Lt~LP~sl-----~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 397 ---LP---VLPSELKELMVSGNRLT-S-LPM----LPSGLLSLSVYRNQ-LTRLPESL-----IHLSSETTVNLEGNP 456 (788)
T ss_pred ---CC---CcccCCCEEEccCCcCC-C-CCc----chhhhhhhhhccCc-ccccChHH-----hhccCCCeEECCCCC
Confidence 00 11345777777776422 2 221 23567788887765 44454332 246778888887754
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.05 E-value=2.4e-08 Score=121.59 Aligned_cols=203 Identities=24% Similarity=0.203 Sum_probs=129.8
Q ss_pred CcccccchHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000447 137 GHEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1497)
.+..+.||+++++++...+. +.....+.|+|++|+|||++++.++++.......-.++++++....+...++.++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45578999999999999875 33445688999999999999999999876433233466777777778889999999
Q ss_pred HHhCCC-CC--CCChHHHHHHHHHHHhc-CCeEEEEEcCCCChh------hhhhccCCCCCCCCCeE--EEEEeCchhhh
Q 000447 213 DQLGLN-FC--EESDSERIMMLCNRLKR-EKKILVILDDIWTSL------DLERTGIPFGDVHRGCK--ILVTSRRRDVL 280 (1497)
Q Consensus 213 ~~l~~~-~~--~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--ilvTTR~~~v~ 280 (1497)
.++... .+ ..+..+..+.+.+.+.. +++.+||+|+++... .+..+..... ...+++ +|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchh
Confidence 998752 22 12334555666666653 466899999998743 1222222111 112333 56666655433
Q ss_pred hh------cCcccceEEecCCCHHHHHHHHHHHhCC-----CCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 000447 281 VS------EMHCQNNYCVSVLNKEEAWSLFSKVVGN-----CVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1497)
Q Consensus 281 ~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-----~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 340 (1497)
.. ..-....+.+++++.++..+++..++.. ...+..++.+++......|..+.|+.++-.
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 21 0111346899999999999999988732 122223333333333334567777776644
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.04 E-value=2.5e-08 Score=114.72 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=117.3
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHH---
Q 000447 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCN--- 233 (1497)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~--- 233 (1497)
..+.+++.|+|++|+||||+++.+++..... .+ .++|+ +....+..++++.|...++..............+..
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999886522 11 22333 334457788999999998876544433333333332
Q ss_pred -HHhcCCeEEEEEcCCCChh--hhhhccCCC---CCCCCCeEEEEEeCchhhhhh--------cCcccceEEecCCCHHH
Q 000447 234 -RLKREKKILVILDDIWTSL--DLERTGIPF---GDVHRGCKILVTSRRRDVLVS--------EMHCQNNYCVSVLNKEE 299 (1497)
Q Consensus 234 -~l~~~k~~LlVlDdv~~~~--~~~~l~~~l---~~~~~gs~ilvTTR~~~v~~~--------~~~~~~~~~l~~L~~~e 299 (1497)
....+++.+||+||++... .++.+.... ........|++|....-.... .......+++++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2335788999999998863 344433211 112233345666543311000 01113467899999999
Q ss_pred HHHHHHHHhC---CCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 000447 300 AWSLFSKVVG---NCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1497)
Q Consensus 300 ~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 342 (1497)
..+++...+. ......-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987763 211222335678999999999999999888766
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.02 E-value=1e-11 Score=137.80 Aligned_cols=198 Identities=16% Similarity=0.133 Sum_probs=124.6
Q ss_pred cccceeEEEEeeCCCCCCCCchhhhcCCCCccEEEeccCccchhhhccCCCCCcCCCccccccccccceEeccCCCCccc
Q 000447 808 FFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTS 887 (1497)
Q Consensus 808 ~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~ 887 (1497)
..|+++.|.+.+|.++++-........++.|++|.+..|.++++....... ..|++|+.|++++||.++.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----------~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----------EGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----------HhhhhHHHhhhccCchhhc
Confidence 356666666677766666544445556677777777777776665543211 2467777777777776654
Q ss_pred cccCcCCCCCCCCCCCCcccccccccccceeccccccccccCCCCCCCCCCcccccEEEEccCCCccccCCchhHhhccc
Q 000447 888 FYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQ 967 (1497)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~i~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~ 967 (1497)
= ..-.-......++++...+|...+.-. .......++-+.++++..|..+++.....+...+..
T Consensus 232 ~--------------gv~~~~rG~~~l~~~~~kGC~e~~le~--l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 232 N--------------GVQALQRGCKELEKLSLKGCLELELEA--LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred C--------------cchHHhccchhhhhhhhcccccccHHH--HHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 1 001111123446666666664222110 011112455567777888988887644445667888
Q ss_pred cceEEEeeccccceeeccccCcccccceecCccceeeccCCCccccccCCcccccCCCcceEEeecCCce
Q 000447 968 LQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKV 1037 (1497)
Q Consensus 968 L~~L~I~~C~~L~~l~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L 1037 (1497)
|+.|..++|.++...+.. ......++|+.|.+..|..+++.........|+.|+.+++.+|...
T Consensus 296 lq~l~~s~~t~~~d~~l~------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLW------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred hhhhcccCCCCCchHHHH------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 999999999887654432 1223468899999999998888877777778899999999888654
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.94 E-value=9.2e-11 Score=129.13 Aligned_cols=120 Identities=26% Similarity=0.389 Sum_probs=78.7
Q ss_pred cCccccCCCccccccceEEEcccCCCCCCCCcc--CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecC-ccCccCC
Q 000447 475 NDALIEWPNKDMLKNCIAIFLHDINTGELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTR-MKLLTLP 551 (1497)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~lsl~~~~~~~lp~~~--~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~-~~i~~lp 551 (1497)
..+..++|. +.......|.+..|.|..+|+.. .+++||.|+|+.|.++. |.++.|.+++.|-.|-+-+ |+|+.+|
T Consensus 55 ~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 55 GKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 345566654 45667788888888899998876 78899999999888744 4444568887776665555 7888777
Q ss_pred c-cCCCCCCCCEEeccCCCCCCC--cccCCCCCCcEEEeecCCCcccc
Q 000447 552 S-SFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLP 596 (1497)
Q Consensus 552 ~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~LP 596 (1497)
. .|+.|..|+-|.+.-|++..+ ..+..|++|..|.+..|.+..++
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~ 180 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC 180 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc
Confidence 4 366666666666666655444 44555555555555544444444
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.92 E-value=3.2e-09 Score=119.47 Aligned_cols=194 Identities=21% Similarity=0.266 Sum_probs=104.1
Q ss_pred ccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH---------H
Q 000447 141 IESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE---------I 211 (1497)
Q Consensus 141 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~---------i 211 (1497)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++++.+..... .+ .++|+.............. +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 68999999999999886667789999999999999999999987421 22 3445544333322211111 1
Q ss_pred HHHhCCCCC-----------CCChHHHHHHHHHHHhc-CCeEEEEEcCCCChh-h----------hhhccCCCCCCCCCe
Q 000447 212 ADQLGLNFC-----------EESDSERIMMLCNRLKR-EKKILVILDDIWTSL-D----------LERTGIPFGDVHRGC 268 (1497)
Q Consensus 212 ~~~l~~~~~-----------~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~----------~~~l~~~l~~~~~gs 268 (1497)
.+.+....+ ..........+.+.+.+ +++.+||+||+.... . +..+........+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 111211111 11223445555666654 356999999986654 1 111111111233344
Q ss_pred EEEEEeCchhhhhh-------cCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 269 KILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 269 ~ilvTTR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
+|+++........ ..+....+.+++|+.+++++++...+.....-+.-++..++|...+||+|..|..
T Consensus 159 -~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 -IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred -EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4444444433321 2344456999999999999999997643311112244568999999999988764
No 31
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=5.9e-09 Score=110.25 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=92.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEEEEEecCCcCHH---HHHHHHHHHhCCCCCCCChHHHHHHHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLK---RIRREIADQLGLNFCEESDSERIMMLCN 233 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 233 (1497)
|++.|+|.+|+||||+++.++.+...... +...+|+..+...... .+...|.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 58999999999999999999998765443 3456677765544332 3444444443322111 1112333
Q ss_pred HHhcCCeEEEEEcCCCChhh---------hhhccCC-CCC-CCCCeEEEEEeCchhh--hhhcCcccceEEecCCCHHHH
Q 000447 234 RLKREKKILVILDDIWTSLD---------LERTGIP-FGD-VHRGCKILVTSRRRDV--LVSEMHCQNNYCVSVLNKEEA 300 (1497)
Q Consensus 234 ~l~~~k~~LlVlDdv~~~~~---------~~~l~~~-l~~-~~~gs~ilvTTR~~~v--~~~~~~~~~~~~l~~L~~~e~ 300 (1497)
...+.+++++|+|++++... +..+... +.. ..++++++||+|.... ..........+++++|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 44457999999999877632 1111111 121 2468999999998876 322344446899999999999
Q ss_pred HHHHHHHh
Q 000447 301 WSLFSKVV 308 (1497)
Q Consensus 301 ~~Lf~~~~ 308 (1497)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998875
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=1.6e-10 Score=132.78 Aligned_cols=186 Identities=26% Similarity=0.378 Sum_probs=156.7
Q ss_pred ceEEEcccCCCCCCCCcc-CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCC
Q 000447 490 CIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQC 568 (1497)
Q Consensus 490 ~~~lsl~~~~~~~lp~~~-~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~ 568 (1497)
.....++.|.+.++|..+ -|-.|..+.+..|.+ ..+|..+ .++..|.+|+|+.|.+..+|..++.|+ |++|.+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 345667788888898877 677788888887776 5677775 889999999999999999999998876 899999999
Q ss_pred CCCCC-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCccccccccc
Q 000447 569 ILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGL 647 (1497)
Q Consensus 569 ~l~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 647 (1497)
+++.+ ..++.+.+|..||.+.|.+..+|..++.|.+|+.|+++.|+ +..+|++ +..| .|..||++.|++.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis------ 224 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS------ 224 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee------
Confidence 99877 88999999999999999999999999999999999999987 8889998 6655 5899999999886
Q ss_pred ccccCccChhhcCCCCCCcEEEeeccCCCCCCcccc-cccccceeEE
Q 000447 648 NLERNNASLQELSILSHLTTLEIHIRDAVILPKGLF-SQKLARYKIL 693 (1497)
Q Consensus 648 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~-~~~L~~l~~~ 693 (1497)
..+-.+.+|++|++|.+.+|....-|..+. ..++.-++.+
T Consensus 225 ------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 225 ------YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYL 265 (722)
T ss_pred ------ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeee
Confidence 456789999999999999999998887763 3344444443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=3.4e-09 Score=109.82 Aligned_cols=106 Identities=27% Similarity=0.316 Sum_probs=25.0
Q ss_pred CCCCccEEEecCccCccCCccCC-CCCCCCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccchhh-cCCCccCEEec
Q 000447 533 GMPKLRVLVLTRMKLLTLPSSFC-HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREI-GELTQLKLLDL 610 (1497)
Q Consensus 533 ~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i-~~L~~L~~L~L 610 (1497)
+..++|.|+|++|.|..+. .++ .+.+|+.|+|++|.|+.++.+..|++|++|++++|.|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445556666666555442 233 35555555555555555555555555555555555555554433 23555555555
Q ss_pred cCCCCCCCcCh-hhhcCCCCCCEEEecCCcc
Q 000447 611 SNCSKLKVIPP-NVISSLSQLEELYLGNTSV 640 (1497)
Q Consensus 611 s~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~ 640 (1497)
++|+ +..+.. ..++.+++|++|++.+|.+
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCcc
Confidence 5554 322211 1133444444444444443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=6.8e-10 Score=117.50 Aligned_cols=136 Identities=19% Similarity=0.192 Sum_probs=118.9
Q ss_pred CCCCccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccC
Q 000447 533 GMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSN 612 (1497)
Q Consensus 533 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~ 612 (1497)
..+.|..|||++|.|+.+-.+..-++.+|+|++++|.+..+.++..|.+|+.||||+|.+.++...-.+|-|.++|.|++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 35679999999999999999999999999999999999999889999999999999999998887778899999999999
Q ss_pred CCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChhhcCCCCCCcEEEeeccCCCCCCcc
Q 000447 613 CSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKG 681 (1497)
Q Consensus 613 ~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~ 681 (1497)
|. +..+.. +++|-+|..|++++|.+. +......+++++.|+.+.+.+|.+..++..
T Consensus 362 N~-iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 362 NK-IETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hh-Hhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 86 777664 889999999999999886 223457899999999999999988766643
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=4e-09 Score=109.27 Aligned_cols=81 Identities=35% Similarity=0.510 Sum_probs=16.0
Q ss_pred CCCCEEeccCCCCCCCcccC-CCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEec
Q 000447 558 PNLESLCLDQCILGDIAIIG-NLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLG 636 (1497)
Q Consensus 558 ~~Lr~L~L~~~~l~~l~~i~-~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~ 636 (1497)
..+|.|+|++|.|..++.++ .+.+|+.|++++|.|+.++ .+..|++|++|++++|. ++.++......+++|++|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECc
Confidence 34455555555554444444 3445555555555544443 34444555555555444 444443311234455555555
Q ss_pred CCcc
Q 000447 637 NTSV 640 (1497)
Q Consensus 637 ~~~~ 640 (1497)
+|.+
T Consensus 97 ~N~I 100 (175)
T PF14580_consen 97 NNKI 100 (175)
T ss_dssp TS--
T ss_pred CCcC
Confidence 4444
No 36
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.77 E-value=5.8e-07 Score=108.38 Aligned_cols=198 Identities=20% Similarity=0.215 Sum_probs=124.2
Q ss_pred cccccchHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-CCc---ceEEEEEecCCcCHHHHHH
Q 000447 138 HEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIF---DEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~~ 209 (1497)
+..+.||++++++|..++. +.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 3468999999999999986 3445679999999999999999999876421 111 2456788877778889999
Q ss_pred HHHHHhC---CCCCC--CChHHHHHHHHHHHhc-CCeEEEEEcCCCChh-h----hhhccCCC-CCCC--CCeEEEEEeC
Q 000447 210 EIADQLG---LNFCE--ESDSERIMMLCNRLKR-EKKILVILDDIWTSL-D----LERTGIPF-GDVH--RGCKILVTSR 275 (1497)
Q Consensus 210 ~i~~~l~---~~~~~--~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~gs~ilvTTR 275 (1497)
+|+.++. ...+. .+..+....+.+.+.. +++++||||+++... . ...+.... .... ....+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 9999883 33221 2233445556666543 578899999998762 1 12221110 1111 2334555554
Q ss_pred chhhhhh---cC---cccceEEecCCCHHHHHHHHHHHhCC----CCCCchHHHHHHHHHHHhCCChHHH
Q 000447 276 RRDVLVS---EM---HCQNNYCVSVLNKEEAWSLFSKVVGN----CVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 276 ~~~v~~~---~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
....... .. -....+.+++++.+|..+++..++.. ...+++..+...+++....|-|-.+
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 4432111 00 11246899999999999999988731 1122232334455667777887443
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.66 E-value=7.6e-09 Score=122.56 Aligned_cols=108 Identities=26% Similarity=0.266 Sum_probs=49.8
Q ss_pred hcCCCCccEEEecCccCc-cCCccCCCC---CCCCEEeccCCCCCC-----C-cccCCC-CCCcEEEeecCCCc-----c
Q 000447 531 FAGMPKLRVLVLTRMKLL-TLPSSFCHL---PNLESLCLDQCILGD-----I-AIIGNL-KNLEILSLCCSDIE-----Q 594 (1497)
Q Consensus 531 f~~l~~Lr~L~L~~~~i~-~lp~~i~~L---~~Lr~L~L~~~~l~~-----l-~~i~~L-~~L~~L~Ls~~~l~-----~ 594 (1497)
|..+++|+.|++++|.+. ..+..+..+ ++|++|++++|.+.. + ..+..+ .+|+.|++++|.++ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344555555555555554 222222222 235555555555431 1 233444 55555555555544 2
Q ss_pred cchhhcCCCccCEEeccCCCCCCC-----cChhhhcCCCCCCEEEecCCcc
Q 000447 595 LPREIGELTQLKLLDLSNCSKLKV-----IPPNVISSLSQLEELYLGNTSV 640 (1497)
Q Consensus 595 LP~~i~~L~~L~~L~Ls~~~~l~~-----lp~~~l~~L~~L~~L~l~~~~~ 640 (1497)
++..+..+.+|++|++++|. +.. ++.. +..+++|++|++++|.+
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 157 LAKALRANRDLKELNLANNG-IGDAGIRALAEG-LKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHhCCCcCEEECcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCCcc
Confidence 33334445555555555554 221 1111 33344555555555544
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.66 E-value=4.3e-07 Score=106.92 Aligned_cols=276 Identities=12% Similarity=0.038 Sum_probs=143.4
Q ss_pred CCCcccccchHHHHHHHHHHHc-----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1497)
+.....|+||++.++.+..++. ....+.+.|+|++|+|||++|+.+++..... + .++..+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 3456789999999998877765 2345678999999999999999999987521 1 1122111 11112223
Q ss_pred HHHHHhCCCC----CC--CChHHHHHHHHHHHhcCCeEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhhhc
Q 000447 210 EIADQLGLNF----CE--ESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSE 283 (1497)
Q Consensus 210 ~i~~~l~~~~----~~--~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~ 283 (1497)
.++..++... ++ .-.....+.+...+ ++.+..+|+|+..+...+.. .++ +.+-|..|||...+....
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAM-EDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHH-HhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHH
Confidence 3333332110 00 00011112222222 24455556665444322211 111 245566677755443310
Q ss_pred C-cccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHHHHHHHHHhhcc
Q 000447 284 M-HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRFSAR 362 (1497)
Q Consensus 284 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~ 362 (1497)
. .....+++++++.++..+++.+.++..... -..+.+..|++.|+|.|-.+..+...+. .|.... .....
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~~~I 238 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GDGVI 238 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CCCCC
Confidence 0 113468999999999999999988643222 2245688999999999965544443221 121110 00011
Q ss_pred CccchHHHHHhHHHHHhccCCccchhhhhh-hhcccCCCCCcchhhHhhhccccccccchhhHHHHHHHHHHHHH-HHhh
Q 000447 363 NFTGLEALLGSTIELIYNYLEGEELKLTFL-LCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVR-GLKD 440 (1497)
Q Consensus 363 ~~~~~~~~~~~~l~lsy~~L~~~~lk~cfl-~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~-~L~~ 440 (1497)
........+ ..+...|..|++.+ +..+. ....|+.+ .+.++.+-.. + | .+..+.++ .++ .|++
T Consensus 239 ~~~~v~~~l-~~~~~~~~~l~~~~-~~~l~~~~~~~~~~-~~~~~~~a~~-l--g--~~~~~~~~-------~~e~~Li~ 303 (328)
T PRK00080 239 TKEIADKAL-DMLGVDELGLDEMD-RKYLRTIIEKFGGG-PVGLDTLAAA-L--G--EERDTIED-------VYEPYLIQ 303 (328)
T ss_pred CHHHHHHHH-HHhCCCcCCCCHHH-HHHHHHHHHHcCCC-ceeHHHHHHH-H--C--CCcchHHH-------HhhHHHHH
Confidence 111122234 44555667777763 55553 56666653 2333333111 1 1 11122222 255 6888
Q ss_pred ccccccC
Q 000447 441 TCLLHDD 447 (1497)
Q Consensus 441 ~~ll~~~ 447 (1497)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 9999754
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.64 E-value=1.8e-08 Score=119.23 Aligned_cols=177 Identities=25% Similarity=0.248 Sum_probs=118.6
Q ss_pred ceEEEcccCCCCCCCC-------cc-CCCCccEEEcCCCCCCCCCCchhhcCCC---CccEEEecCccCc-----cCCcc
Q 000447 490 CIAIFLHDINTGELPE-------GL-EYPHLTSLCMNPKDPFLHIPDNFFAGMP---KLRVLVLTRMKLL-----TLPSS 553 (1497)
Q Consensus 490 ~~~lsl~~~~~~~lp~-------~~-~~~~Lr~L~L~~~~~~~~lp~~~f~~l~---~Lr~L~L~~~~i~-----~lp~~ 553 (1497)
++++.+.++.+...+. .+ .+++|+.|++++|.+....+.. |..+. +|++|++++|.+. .+...
T Consensus 53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred ceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 5566666655442121 22 5779999999988775433332 34444 4999999999876 23445
Q ss_pred CCCC-CCCCEEeccCCCCCC-----C-cccCCCCCCcEEEeecCCCc-----ccchhhcCCCccCEEeccCCCCCCCc--
Q 000447 554 FCHL-PNLESLCLDQCILGD-----I-AIIGNLKNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCSKLKVI-- 619 (1497)
Q Consensus 554 i~~L-~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~Ls~~~l~-----~LP~~i~~L~~L~~L~Ls~~~~l~~l-- 619 (1497)
+..+ ++|+.|++++|.++. + ..+..+.+|++|++++|.+. .++..+..+++|++|++++|. +...
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~ 210 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGA 210 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHH
Confidence 6677 899999999998862 2 45777889999999999887 355566777899999999986 4422
Q ss_pred ---ChhhhcCCCCCCEEEecCCcccccccccccccCccChhhc-CCCCCCcEEEeeccCCC
Q 000447 620 ---PPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQEL-SILSHLTTLEIHIRDAV 676 (1497)
Q Consensus 620 ---p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L-~~L~~L~~L~l~~~~~~ 676 (1497)
+.. +..+++|++|++++|.+..... ......+ .+.+.|+.|++.++.+.
T Consensus 211 ~~l~~~-~~~~~~L~~L~ls~n~l~~~~~-------~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 211 SALAET-LASLKSLEVLNLGDNNLTDAGA-------AALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHH-hcccCCCCEEecCCCcCchHHH-------HHHHHHHhccCCCceEEEccCCCCC
Confidence 222 5678889999999887652000 0001111 13467888888877543
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=2.2e-09 Score=123.65 Aligned_cols=172 Identities=24% Similarity=0.389 Sum_probs=134.9
Q ss_pred EEcccCCCCCCCCcc---CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCC
Q 000447 493 IFLHDINTGELPEGL---EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI 569 (1497)
Q Consensus 493 lsl~~~~~~~lp~~~---~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 569 (1497)
+.+++-...++|... .+.--...+++.|.+ ..+|..+ ..+..|..|.|..|.+..+|..+++|..|.+|+|+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~-~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF-SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccccc-ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 344444444555432 344455677888776 5677764 77888899999999999999999999999999999999
Q ss_pred CCCC-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccc
Q 000447 570 LGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLN 648 (1497)
Q Consensus 570 l~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 648 (1497)
++.+ ..++.| -|++|-+++|+++.+|..|+-+..|.+||.+.|. +..+|.+ ++.+.+|+.|.+..|.+.
T Consensus 133 lS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------- 202 (722)
T KOG0532|consen 133 LSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------- 202 (722)
T ss_pred hhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-------
Confidence 9877 555555 5899999999999999999988999999999887 8889988 899999999998888765
Q ss_pred cccCccChhhcCCCCCCcEEEeeccCCCCCCccc
Q 000447 649 LERNNASLQELSILSHLTTLEIHIRDAVILPKGL 682 (1497)
Q Consensus 649 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~ 682 (1497)
..+.++..| .|..|++++|.+..+|-.+
T Consensus 203 -----~lp~El~~L-pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 203 -----DLPEELCSL-PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred -----hCCHHHhCC-ceeeeecccCceeecchhh
Confidence 455677744 4888999999888777543
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.58 E-value=6.4e-07 Score=100.73 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=143.7
Q ss_pred CcccccchHHHH---HHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 137 GHEFIESRESIL---NDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 137 ~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
...+++|.+..+ .-|..++....+.-..+||++|+||||||+.++.... ..| ..++...+-.+-++++++
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDLREIIE 94 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHHHHHHH
Confidence 344455554332 1133344467888899999999999999999998664 334 333333322222222322
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE--EeCchh--hhhhcCccc
Q 000447 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRD--VLVSEMHCQ 287 (1497)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv--TTR~~~--v~~~~~~~~ 287 (1497)
. -.+....+++.+|++|+|..- .+-+.+ +|...+|.-|+| ||.|+. +........
T Consensus 95 ~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 95 E----------------ARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred H----------------HHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 1 122223479999999999654 233333 455567887887 676663 222134557
Q ss_pred ceEEecCCCHHHHHHHHHHHhCCC------CCCchHHHHHHHHHHHhCCChHHHHHHH----HHhcCCC--hHH-HHHHH
Q 000447 288 NNYCVSVLNKEEAWSLFSKVVGNC------VEDPDLQTVAIQVANECGGLPIAILTVA----RTLRNKP--LFV-WKKAL 354 (1497)
Q Consensus 288 ~~~~l~~L~~~e~~~Lf~~~~~~~------~~~~~~~~~~~~i~~~c~glPLai~~~~----~~L~~~~--~~~-w~~~l 354 (1497)
.++.+++|+.+|-.+++.+.+-+. ....-.++....+++.++|=--++-... ..-+... ..+ -++++
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l 235 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEIL 235 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHH
Confidence 799999999999999999855211 1111123456678888888654433222 2222221 111 33333
Q ss_pred HHHHhhccC--ccchHHHHHhHHHHHhccCCccchhhhhhhhcccCCCCCcc-h-hhHhhh-cccccccc
Q 000447 355 QELRFSARN--FTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAP-I-MDLLKY-GTGLGLFE 419 (1497)
Q Consensus 355 ~~l~~~~~~--~~~~~~~~~~~l~lsy~~L~~~~lk~cfl~~s~fp~~~~~~-i-~~li~~-w~~~g~~~ 419 (1497)
.+-.. ..+ -+...++. .++.-|...=+++ -..+.++-++-.+.|-. | ..|+++ |..-|+-.
T Consensus 236 ~~~~~-~~Dk~gD~hYdli-SA~hKSvRGSD~d--AALyylARmi~~GeDp~yiARRlv~~AsEDIGlAd 301 (436)
T COG2256 236 QRRSA-RFDKDGDAHYDLI-SALHKSVRGSDPD--AALYYLARMIEAGEDPLYIARRLVRIASEDIGLAD 301 (436)
T ss_pred hhhhh-ccCCCcchHHHHH-HHHHHhhccCCcC--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCC
Confidence 32110 112 23456688 8999999888776 34555555555543322 2 666664 44556554
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.57 E-value=3e-06 Score=104.32 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=123.5
Q ss_pred cccccchHHHHHHHHHHHc----C-CCeEEEEEEcCCCchHHHHHHHHHHHHhc---cCCcc--eEEEEEecCCcCHHHH
Q 000447 138 HEFIESRESILNDILDALR----G-PYVYMIGVYGMAGIGKTTLVKEVARLAKE---GRIFD--EVVFAEVSQTPDLKRI 207 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~ 207 (1497)
+..+.||++++++|...|. . ....++.|+|++|+|||+.++.|.+.... +...+ .+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4667899999999998886 2 23357889999999999999999987642 11222 3567887777788889
Q ss_pred HHHHHHHhCCCCCCC--ChHHHHHHHHHHHhc--CCeEEEEEcCCCChh--hhhhccCCCC-CCCCCeEEEE--EeCchh
Q 000447 208 RREIADQLGLNFCEE--SDSERIMMLCNRLKR--EKKILVILDDIWTSL--DLERTGIPFG-DVHRGCKILV--TSRRRD 278 (1497)
Q Consensus 208 ~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~ilv--TTR~~~ 278 (1497)
...|.+++....+.. ......+.+...+.+ ....+||||+|+... .-+.+...+. ....+++|+| +|...+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 999998885443322 233445555555532 234589999997652 1011111111 1123455444 333221
Q ss_pred hhh----h---cCcccceEEecCCCHHHHHHHHHHHhCC---CCCCchHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 000447 279 VLV----S---EMHCQNNYCVSVLNKEEAWSLFSKVVGN---CVEDPDLQTVAIQVANECGGLPIAILTVARTLR 343 (1497)
Q Consensus 279 v~~----~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 343 (1497)
... + .++ ...+.++|++.++-.+++..++.. ...+..++-+|+.++..-|-.=.||.++-.+..
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 111 1 122 234778999999999999998853 223333444444444444445566665554443
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=9.8e-09 Score=108.89 Aligned_cols=125 Identities=23% Similarity=0.286 Sum_probs=61.7
Q ss_pred cccceEEEcccCCCCCCCCcc-CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEec
Q 000447 487 LKNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCL 565 (1497)
Q Consensus 487 ~~~~~~lsl~~~~~~~lp~~~-~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L 565 (1497)
|+.+..+.+++|.+..+...+ -.+.+|.|+++.|.+. .+.. +..+.+|..|||++|.+.++-..-.+|-|.+.|.|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 344555555555555555444 2455555555555432 1111 24455555555555555444333334445555555
Q ss_pred cCCCCCCCcccCCCCCCcEEEeecCCCcccc--hhhcCCCccCEEeccCCC
Q 000447 566 DQCILGDIAIIGNLKNLEILSLCCSDIEQLP--REIGELTQLKLLDLSNCS 614 (1497)
Q Consensus 566 ~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP--~~i~~L~~L~~L~Ls~~~ 614 (1497)
.+|.+..++.+++|+.|.+||+++|+|..+. .+||+|+.|++|.|.+|.
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5555555555555555555555555555432 235555555555555444
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=1e-06 Score=107.04 Aligned_cols=180 Identities=15% Similarity=0.159 Sum_probs=109.4
Q ss_pred CCcccccchHHHHHH---HHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000447 136 EGHEFIESRESILND---ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1497)
.....++|++..+.. +..++.....+.+.++|++|+||||+|+.+++... ..| +.++....-.+-++.+.
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--APF-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE-----EEEecccccHHHHHHHH
Confidence 345568888877666 77777777777899999999999999999998763 222 33322211111112222
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE--EeCchh--hhhhcCcc
Q 000447 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRD--VLVSEMHC 286 (1497)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv--TTR~~~--v~~~~~~~ 286 (1497)
+. .......+++.+|++|+++.. ...+.+...+. .|..++| ||.+.. +.......
T Consensus 82 ~~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 82 EE----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred HH----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc
Confidence 11 111122368889999999865 23444433332 3454555 344332 11112233
Q ss_pred cceEEecCCCHHHHHHHHHHHhCCC-CCC-chHHHHHHHHHHHhCCChHHHHHHHHH
Q 000447 287 QNNYCVSVLNKEEAWSLFSKVVGNC-VED-PDLQTVAIQVANECGGLPIAILTVART 341 (1497)
Q Consensus 287 ~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~-~~~~~~~~~i~~~c~glPLai~~~~~~ 341 (1497)
...+++.+++.++.+.++.+.+... ... .-..+..+.|++.++|-+..+..+...
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4689999999999999999876421 111 222456778999999998766544433
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.51 E-value=1.8e-06 Score=101.07 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=110.9
Q ss_pred cccccchHHHHHHHHHHHc-----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000447 138 HEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1497)
...|+||++.++++..++. ......+.++|++|+|||+||+.+++..... + ..+..+......+ +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 4578999999999988886 2345568899999999999999999887421 2 1122111111222 22222
Q ss_pred HHhCCCC----C--CCChHHHHHHHHHHHhcCCeEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhhhcCc-
Q 000447 213 DQLGLNF----C--EESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMH- 285 (1497)
Q Consensus 213 ~~l~~~~----~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~- 285 (1497)
..++... + +.-.....+.+...+ .+.+..+|+|+..+...|.. +++ +.+-|..|||...+......
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 3332211 0 000111222233333 34556677776655544431 122 24556667776544332111
Q ss_pred ccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 000447 286 CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1497)
Q Consensus 286 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 340 (1497)
....+++++++.+|..+++.+.++..... -..+....|++.|+|.|-.+..++.
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHH
Confidence 23467999999999999999988632221 2245678899999999976655544
No 46
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=1.2e-05 Score=92.32 Aligned_cols=166 Identities=15% Similarity=0.216 Sum_probs=105.1
Q ss_pred cCCCcccccchHHHHHHHHHHHcC---CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000447 134 YNEGHEFIESRESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1497)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1497)
.+.+...|+||++++.++...|.+ ...+++.|+|++|+|||||++.+..... + ....++.. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 355677899999999999999863 2346999999999999999999996653 1 13333333 67999999
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHh----c-CCeEEEEEc--CCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhhh-
Q 000447 211 IADQLGLNFCEESDSERIMMLCNRLK----R-EKKILVILD--DIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS- 282 (1497)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVlD--dv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~- 282 (1497)
++.+||.. +.....+....+.+.+. . +++.+||+- +-.+....-.-...+.....-|.|++----+.....
T Consensus 329 LL~ALGV~-p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 329 VVKALGVP-NVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HHHHcCCC-CcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhc
Confidence 99999974 22333344444444333 2 667777763 222221110000112223345677775544433221
Q ss_pred -cCcccceEEecCCCHHHHHHHHHHHh
Q 000447 283 -EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 283 -~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
....-..|.+++++.++|.++-.+..
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhcc
Confidence 23345678999999999998877654
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.46 E-value=1.3e-06 Score=96.78 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=92.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
..+.+.|+|++|+|||+||+.+++....+ ...+.|+++.... ... ....+.+ .
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~--~ 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENL--E 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhc--c
Confidence 34678999999999999999999987533 3355677653110 000 0112222 2
Q ss_pred CeEEEEEcCCCCh---hhhhh-ccCCCCCC-CCCeEEEEEeCch----------hhhhhcCcccceEEecCCCHHHHHHH
Q 000447 239 KKILVILDDIWTS---LDLER-TGIPFGDV-HRGCKILVTSRRR----------DVLVSEMHCQNNYCVSVLNKEEAWSL 303 (1497)
Q Consensus 239 k~~LlVlDdv~~~---~~~~~-l~~~l~~~-~~gs~ilvTTR~~----------~v~~~~~~~~~~~~l~~L~~~e~~~L 303 (1497)
+.-+||+||+|.. ..|+. +...+... ..|..+||+|.+. ++.. .+.....++++++++++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 3458999999874 34543 22222211 2355565544433 4444 245566899999999999999
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 304 FSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 304 f~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
+++.+....- .--+++..-|++++.|-.-++..+
T Consensus 170 L~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 170 LQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHH
Confidence 9988842211 112456778888888776554433
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=1.9e-07 Score=113.94 Aligned_cols=173 Identities=28% Similarity=0.379 Sum_probs=107.9
Q ss_pred cceEEEcccCCCCCCCCccCCC--CccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEEecc
Q 000447 489 NCIAIFLHDINTGELPEGLEYP--HLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLD 566 (1497)
Q Consensus 489 ~~~~lsl~~~~~~~lp~~~~~~--~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~ 566 (1497)
.+..+.+.++.+.+++...... +|+.|+++.|.+ ..+|.. ...++.|+.|++++|.+..+|...+.+.+|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccch-hhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 4566666666666666655432 677777776655 334322 356677777777777777776666666777777777
Q ss_pred CCCCCCCc-ccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCccccccc
Q 000447 567 QCILGDIA-IIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFE 645 (1497)
Q Consensus 567 ~~~l~~l~-~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 645 (1497)
+|.+..++ .++.+.+|++|.+++|.+...+..+.++.++..|.+.++. +..++.. ++.+.+|+.|++++|.+.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~---- 268 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS---- 268 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc----
Confidence 77776663 3355666777777766555566666677777777666554 4444444 666667777777666554
Q ss_pred ccccccCccChhhcCCCCCCcEEEeeccCCCCC
Q 000447 646 GLNLERNNASLQELSILSHLTTLEIHIRDAVIL 678 (1497)
Q Consensus 646 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 678 (1497)
.+..++.+.+|+.|+++++.....
T Consensus 269 ---------~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 ---------SISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---------ccccccccCccCEEeccCcccccc
Confidence 122366667777777766655433
No 49
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.1e-05 Score=90.94 Aligned_cols=200 Identities=24% Similarity=0.275 Sum_probs=128.5
Q ss_pred ccccchHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 139 EFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
..+.+|+++++++...|. +....-+.|+|.+|+|||+.++.+....+....=..+++|++....+..+++..|+++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 348899999999998876 3333349999999999999999999987643222227899999999999999999999
Q ss_pred hC-CCCCCCChHHHHHHHHHHHhc-CCeEEEEEcCCCChhhhh--hccCCCCCCC-CCeEEEE--EeCchhhhhh-----
Q 000447 215 LG-LNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSLDLE--RTGIPFGDVH-RGCKILV--TSRRRDVLVS----- 282 (1497)
Q Consensus 215 l~-~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~--~l~~~l~~~~-~gs~ilv--TTR~~~v~~~----- 282 (1497)
++ ......+..+....+.+.+.. ++.++||||+++....-. .+..-+.... ..++|++ .+-+......
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 96 233335556667777777764 688999999997763221 1111111111 1344333 3333322221
Q ss_pred --cCcccceEEecCCCHHHHHHHHHHHhC----CC-CCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000447 283 --EMHCQNNYCVSVLNKEEAWSLFSKVVG----NC-VEDPDLQTVAIQVANECGGLPIAILTVA 339 (1497)
Q Consensus 283 --~~~~~~~~~l~~L~~~e~~~Lf~~~~~----~~-~~~~~~~~~~~~i~~~c~glPLai~~~~ 339 (1497)
.++. ..+..+|.+.+|-...+..++. +. ..+..++-++...++..|-.=.||.++-
T Consensus 177 ~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 177 KSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 1222 3488999999999999999882 22 2333333344333444444455555443
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=6.4e-06 Score=101.55 Aligned_cols=181 Identities=13% Similarity=0.140 Sum_probs=115.0
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCC-------------------cceEE
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVV 194 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 194 (1497)
+....+++|.+..++.|..++..+++ +.+.++|..|+||||+|+.+++...-... |.-++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 34566789999999999999886554 46689999999999999999987632111 11122
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCChh--hhhhccCCCCCCCCCe
Q 000447 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGC 268 (1497)
Q Consensus 195 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 268 (1497)
+++.+.+..+ +.+..+.+... .++.-++|||++.... .|..+...+.......
T Consensus 92 EIDAas~rgV---------------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 92 EMDAASNRGV---------------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred EecccccccH---------------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 2322222111 12222222221 2456689999998763 4666655454444567
Q ss_pred EEEEEeCchhhh-hhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh-HHHHH
Q 000447 269 KILVTSRRRDVL-VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILT 337 (1497)
Q Consensus 269 ~ilvTTR~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~ 337 (1497)
++|+||.+..-. .........+++..++.++..+.+.+.++.+...- ..+..+.|++.++|-. -|+.+
T Consensus 151 ~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 777777765432 21234456899999999999999998875332221 2455778999998865 34444
No 51
>PF13173 AAA_14: AAA domain
Probab=98.34 E-value=8.2e-07 Score=88.82 Aligned_cols=120 Identities=19% Similarity=0.181 Sum_probs=81.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1497)
.+++.|.|+.|+||||++++++++.. ....+++++............ +..+.+.+.. .++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLELI-KPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHHhh-ccC
Confidence 36899999999999999999998774 235567776554332111000 0112222222 247
Q ss_pred eEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhhh-----cCcccceEEecCCCHHH
Q 000447 240 KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-----EMHCQNNYCVSVLNKEE 299 (1497)
Q Consensus 240 ~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-----~~~~~~~~~l~~L~~~e 299 (1497)
+.+|++|+|....+|......+.+..+..+|++|+........ ..|....+++.||+-.|
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 7889999999988887766666555567899999998766632 23445578999998776
No 52
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.33 E-value=7.8e-06 Score=97.50 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=111.6
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc-eEEEEEecCCcCHHHHHHHHH---
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDLKRIRREIA--- 212 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~--- 212 (1497)
....++|++..++++..++.....+.+.++|+.|+||||+|+.+++.... ..+. ..+.++++.-.+ .....+.
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~--~~~~~~~~~~ 89 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFD--QGKKYLVEDP 89 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhh--cchhhhhcCc
Confidence 35568899999999999988776667889999999999999999987642 2222 234444432110 0000000
Q ss_pred ---HHhCCC-CCCCChHHHHHHHHHHHhc-----CCeEEEEEcCCCChh--hhhhccCCCCCCCCCeEEEEEeCchh-hh
Q 000447 213 ---DQLGLN-FCEESDSERIMMLCNRLKR-----EKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRRD-VL 280 (1497)
Q Consensus 213 ---~~l~~~-~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~~-v~ 280 (1497)
..++.. .......+....+.+.... ..+-+||+||+.... ....+...+......+++|+||.+.. +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000 0001112233333322221 345589999996552 23333333333334567887775432 22
Q ss_pred hhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
.........+.+.+++.++....+.+.+...... -..+..+.+++.++|.+-.+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 2112234578899999999999998876422111 1245677888999887655443
No 53
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.4e-05 Score=95.22 Aligned_cols=193 Identities=13% Similarity=0.140 Sum_probs=111.0
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
....+++|.+..++.+...+..+++ +.+.++|+.|+||||+|+.+++......... ..........+++...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcC
Confidence 3456788999999999888876554 5679999999999999999998763111110 0000000111111111
Q ss_pred hCCCC-----CCCChHHHHHHHHHHHh----cCCeEEEEEcCCCChh--hhhhccCCCCCCCCCeEEEEEeCch-hhhhh
Q 000447 215 LGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRR-DVLVS 282 (1497)
Q Consensus 215 l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~ 282 (1497)
...+. ......+.+..+.+.+. .+++-++|+|++.... .++.+...+.......++|++|.+. .+...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00000 00011222333333322 1456699999997763 4555555554444566677766543 33322
Q ss_pred cCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
..+....+++.+++.++..+.+.+.+...... -.++.++.|++.++|-|-.+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 22335689999999999999888766321111 113456789999999885433
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.29 E-value=6.8e-05 Score=94.91 Aligned_cols=172 Identities=18% Similarity=0.158 Sum_probs=104.5
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc---ceEEEEEecCC---cCHHHHHHH
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF---DEVVFAEVSQT---PDLKRIRRE 210 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~~~~~ 210 (1497)
....++|++..+.++.+.+.......+.|+|++|+||||+|+.+++..+....+ ...-|+.+... .+...+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 445678999888888887765666789999999999999999998876533333 12345544321 122222111
Q ss_pred H---------------HHHhCCC------------------CCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhh
Q 000447 211 I---------------ADQLGLN------------------FCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLE 255 (1497)
Q Consensus 211 i---------------~~~l~~~------------------~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~ 255 (1497)
+ +...+.. ....-+......+.+.+. ++++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccch
Confidence 1 1111110 011122334555666664 67788887766654 3577
Q ss_pred hccCCCCCCCCCeEEEE--EeCchhhhhhc-CcccceEEecCCCHHHHHHHHHHHhC
Q 000447 256 RTGIPFGDVHRGCKILV--TSRRRDVLVSE-MHCQNNYCVSVLNKEEAWSLFSKVVG 309 (1497)
Q Consensus 256 ~l~~~l~~~~~gs~ilv--TTR~~~v~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~ 309 (1497)
.+...+....+...|+| ||++....... ......+.+.+++.+|.++++++.+.
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 67666665555555555 66654432211 12334678999999999999998775
No 55
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8.3e-06 Score=102.66 Aligned_cols=185 Identities=14% Similarity=0.176 Sum_probs=112.8
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCC-------------------cceEEE
Q 000447 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVF 195 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 195 (1497)
.....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++..--... |.-+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 34567889999999999888876665 4589999999999999999987642111 111122
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEE
Q 000447 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT 273 (1497)
Q Consensus 196 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT 273 (1497)
++......+.. +++|.+.+ ...-..+++-++|||++... ...+.+...+.......++|++
T Consensus 93 idAas~~kVDd-IReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 93 VDAASRTKVDD-TRELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred eccccccCHHH-HHHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 22111111111 12222211 11111367789999999765 3455544444333345555554
Q ss_pred e-CchhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 274 S-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 274 T-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
| ....+..........+++.+++.++..+.+.+.+...... ...+..+.|++.++|.|--+..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4 4444443223345789999999999999998877432111 12356788999999988644433
No 56
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.28 E-value=2.4e-06 Score=86.16 Aligned_cols=116 Identities=22% Similarity=0.330 Sum_probs=81.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc---CCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC-CChHHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG---RIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE-ESDSERIMMLCNR 234 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 234 (1497)
+.+++.|+|.+|+|||+++++++++.... ..-..++|+.+....+...+...|+..++..... .+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999976421 0134567999988889999999999999987666 4556666777888
Q ss_pred HhcCCeEEEEEcCCCCh-h--hhhhccCCCCCCCCCeEEEEEeCc
Q 000447 235 LKREKKILVILDDIWTS-L--DLERTGIPFGDVHRGCKILVTSRR 276 (1497)
Q Consensus 235 l~~~k~~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~ilvTTR~ 276 (1497)
+.+.+..+||+||+... . .++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 87667789999999765 2 2333322222 567778877765
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=9.8e-06 Score=98.73 Aligned_cols=200 Identities=14% Similarity=0.120 Sum_probs=114.5
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+....+++|.+..++.|.+++..+++ +.+.++|+.|+||||+|+.+++..--... +...-+ .+..+......+.|..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEIDA 89 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHHc
Confidence 34566789999999999999886665 46799999999999999999987642100 000000 0000111111111110
Q ss_pred Hh-----CCCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeE-EEEEeCchhhhh
Q 000447 214 QL-----GLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK-ILVTSRRRDVLV 281 (1497)
Q Consensus 214 ~l-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-ilvTTR~~~v~~ 281 (1497)
.- ..+.......+.+..+.+.+. .++.-++|+|+++.. ..++.+...+..-..+++ |++||....+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00 000000111222223333322 356779999999766 345555555543334455 455555555554
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
........+.+..++.++..+.+.+.++......+ .+..+.|++.++|.|.....
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d-~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE-VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 33344678999999999999999887753222221 34567899999999864443
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=7.1e-07 Score=108.91 Aligned_cols=167 Identities=32% Similarity=0.390 Sum_probs=120.1
Q ss_pred CCCCccEEEcCCCCCCCCCCchhhcCCC-CccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCCcc-cCCCCCCcEE
Q 000447 508 EYPHLTSLCMNPKDPFLHIPDNFFAGMP-KLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAI-IGNLKNLEIL 585 (1497)
Q Consensus 508 ~~~~Lr~L~L~~~~~~~~lp~~~f~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~-i~~L~~L~~L 585 (1497)
..+.+..|.+.+|.. ..++... ..++ +|+.|++++|.+..+|..+..+++|+.|++++|++..++. .+.+.+|+.|
T Consensus 114 ~~~~l~~L~l~~n~i-~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNI-TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCccc-ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 556788888887766 4555532 4443 7888888888888887778888888888888888877743 4488888888
Q ss_pred EeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcccccccccccccCccChhhcCCCCCC
Q 000447 586 SLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHL 665 (1497)
Q Consensus 586 ~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 665 (1497)
++++|++..+|..+..+..|++|.+++|. ....+.. +.++.++..|.+.++.+. ..+..++.+.+|
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l 257 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------------DLPESIGNLSNL 257 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee------------eccchhcccccc
Confidence 88888888888777777778888888875 3344444 677777777776666553 124677888889
Q ss_pred cEEEeeccCCCCCCcccccccccce
Q 000447 666 TTLEIHIRDAVILPKGLFSQKLARY 690 (1497)
Q Consensus 666 ~~L~l~~~~~~~~~~~~~~~~L~~l 690 (1497)
++|+++.+.+..++......++..+
T Consensus 258 ~~L~~s~n~i~~i~~~~~~~~l~~L 282 (394)
T COG4886 258 ETLDLSNNQISSISSLGSLTNLREL 282 (394)
T ss_pred ceeccccccccccccccccCccCEE
Confidence 9999999988877762233333333
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.4e-05 Score=97.81 Aligned_cols=194 Identities=11% Similarity=0.092 Sum_probs=112.6
Q ss_pred CCCcccccchHHHHHHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+.....++|.+...+.|..++..++ .+.+.++|+.|+||||+|+.+++..--.. |+.. ..++....-+.|..
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~ 83 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNE 83 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhc
Confidence 3456678999999999999988665 45789999999999999999998763111 1100 01111111111111
Q ss_pred HhCCC-----CCCCChHHHHHHHHHHH----hcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCch-hhhh
Q 000447 214 QLGLN-----FCEESDSERIMMLCNRL----KREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLV 281 (1497)
Q Consensus 214 ~l~~~-----~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~ 281 (1497)
.-..+ .......+.+..+.... ..+++-++|+|+|... .....+...+.....+.++|++|.+. .+..
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 00000 00001112222222222 1256779999999765 34444444443333456677766553 3322
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
........+++.+++.++..+.+.+.+......- ..+....|++.++|-+..+.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i-d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA-DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 1234567899999999999999988774322211 13456789999999774443
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.2e-05 Score=91.96 Aligned_cols=176 Identities=18% Similarity=0.183 Sum_probs=115.7
Q ss_pred ccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHh----ccCCcceEEEEEe-cCCcCHHHHHHHHH
Q 000447 139 EFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAK----EGRIFDEVVFAEV-SQTPDLKRIRREIA 212 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~~~~~i~ 212 (1497)
..++|.+..++.+..++..++. +...++|+.|+||||+|+.+++..- ...++|...|... +....+++ ++++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4577888889999999886554 5778999999999999999998652 2345666666542 23333333 22333
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCC--CChhhhhhccCCCCCCCCCeEEEEEeCchhhhh-hcCcccce
Q 000447 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDI--WTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV-SEMHCQNN 289 (1497)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~-~~~~~~~~ 289 (1497)
+.+.... . .+++-++|+|++ .+...++.+...+.....++.+|++|.+.+..- ........
T Consensus 83 ~~~~~~p---------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKP---------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCc---------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 3332110 0 145555666655 444677777777776667888888887654332 11234568
Q ss_pred EEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 290 YCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 290 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
+.+.++++++....+.+.... . ..+.++.++..++|.|..+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-I----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-C----CHHHHHHHHHHcCCCHHHHH
Confidence 999999999998888766531 1 12336788999999986554
No 61
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.24 E-value=7.4e-06 Score=91.44 Aligned_cols=168 Identities=14% Similarity=0.130 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000447 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1497)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 222 (1497)
+.+..++++.+++.....+.+.|+|+.|+|||++|+.+++.... .....++++++.-.+ ..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHH------hH-----------
Confidence 34556777777766566678999999999999999999987642 233456665443211 00
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEcCCCChh---hhh-hccCCCCC-CCCCeEEEEEeCchhh---------hhhcCcccc
Q 000447 223 SDSERIMMLCNRLKREKKILVILDDIWTSL---DLE-RTGIPFGD-VHRGCKILVTSRRRDV---------LVSEMHCQN 288 (1497)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~ilvTTR~~~v---------~~~~~~~~~ 288 (1497)
..+...+. +.-+||+||++... .|. .+...+.. ...+.++|+||+.... .. .+....
T Consensus 82 ------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~-r~~~~~ 152 (226)
T TIGR03420 82 ------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT-RLAWGL 152 (226)
T ss_pred ------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH-HHhcCe
Confidence 01111222 33489999997653 332 23222211 1234478898885431 11 122245
Q ss_pred eEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000447 289 NYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1497)
Q Consensus 289 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 339 (1497)
.+++.++++++-..+++..+..... .-..+..+.|++.++|.|..+.-+.
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 7899999999999998876531111 1123456778888888887666543
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.1e-07 Score=104.85 Aligned_cols=214 Identities=18% Similarity=0.196 Sum_probs=141.5
Q ss_pred hhcccceeeeecCcccccccccCCCCcccccccEEEEecCCCCcccH--HHHhhcCCccEEEEEccceEEeecchhhhhh
Q 000447 1069 KVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPI--CFLQYFKNLEKLELRWSSYKQIFSYKEAEKH 1146 (1497)
Q Consensus 1069 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~--~~l~~l~sL~~L~I~c~~l~~~~~~~~~~~~ 1146 (1497)
.-+..|++..+.+..+....... -...|++++.|+++.|-+..+-. ...+.+++|+.|+|+-|.+....+.. .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~-~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEE-YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----T 192 (505)
T ss_pred hhHHhhhheeecCccccccchhh-hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc----c
Confidence 34667888888886665544321 12348999999999998655432 56688999999999988776554322 2
Q ss_pred ccccccccEEEeCCCCCCchhhccCCcchhhccccceeEeeccCCccccCCCCcccCcccEEEEecCCCCccccchhhhh
Q 000447 1147 AGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAK 1226 (1497)
Q Consensus 1147 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~ 1226 (1497)
...+++|+.|.+++|. |. |.+.......+|+|+.|.+.....+......-..+..|++|++++ +++.+........
T Consensus 193 ~~~l~~lK~L~l~~CG-ls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCG-LS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVG 268 (505)
T ss_pred hhhhhhhheEEeccCC-CC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Ccccccccccccc
Confidence 2368999999999994 33 444455567789999999988864433222234567799999988 5566665555667
Q ss_pred ccccccEEEEccCccchhhhccCCCccccccccccccccccccccccceecCCcccccCCCccEEEE
Q 000447 1227 SLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFV 1293 (1497)
Q Consensus 1227 ~l~~L~~L~I~~C~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I 1293 (1497)
.++.|..|.++.|. +.++-.-+.+.-.....|++|+.|.+..- ++...+.-+....+++|+.|.+
T Consensus 269 ~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 88899999999886 55553333322334557888888888663 3333333333345566666654
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=98.24 E-value=1e-05 Score=94.82 Aligned_cols=183 Identities=14% Similarity=0.052 Sum_probs=106.4
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc-eEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+.....++|.++.++.|.+++...+.+-+.++|++|+||||+|+.+++...- ..|. .++=++.+...+.. ..+++++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHH-HHHHHHH
Confidence 3345667898888888888877766677889999999999999999988631 2232 12222222222222 2222222
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh--hhhhccCCCCCCCCCeEEEEEeCch-hhhhhcCcccceE
Q 000447 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNY 290 (1497)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~ 290 (1497)
.+..... .+..++.-++|+||++... ....+...+......+++++++... .+..........+
T Consensus 87 ~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 87 MFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 1110000 0012456799999997662 2233322232223456777766543 2222111234578
Q ss_pred EecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH
Q 000447 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 291 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
++.++++++....+...+......- ..+....|++.++|-.-
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMR 195 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 9999999999999988774221111 13457788899988653
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.2e-05 Score=95.79 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=112.5
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcce-EEEEEecCCcCHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~ 212 (1497)
+.....++|.+..+..+...+..+++ +.+.++|+.|+||||+|+.+++..--...... -.+. .+........+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i~ 92 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISFN 92 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHHh
Confidence 34456788999988888887765554 58899999999999999999987632111100 0000 000001111111
Q ss_pred HHhCCC-----CCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE-EeCchhhh
Q 000447 213 DQLGLN-----FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVL 280 (1497)
Q Consensus 213 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~ 280 (1497)
.....+ .......+.+..+.+... .+++-++|+|+++.. ..++.+...+......+++|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 100000 000111222222332221 256778999999875 456666655554445666554 55555554
Q ss_pred hhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
.........+++.+++.++....+.+.+......- ..+....|++.++|-+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 42223446789999999999999998885322111 1345677999999976433
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.6e-05 Score=95.67 Aligned_cols=191 Identities=13% Similarity=0.065 Sum_probs=112.4
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
.....++|.+..++.|..++...+. ..+.++|++|+||||+|+.+++.......+....|.|.+. ..+...
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~ 82 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRG 82 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcC
Confidence 3456788999988888888876654 4669999999999999999998875322222222322110 000000
Q ss_pred hCC-----CCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeC-chhhhhh
Q 000447 215 LGL-----NFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSR-RRDVLVS 282 (1497)
Q Consensus 215 l~~-----~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR-~~~v~~~ 282 (1497)
... +.......+.+..+.+.+. .+++-++|+|+++.. ..++.+...+........+|++|. ...+...
T Consensus 83 ~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 000 0000111222223332222 146679999999765 345555555544444555555554 3333332
Q ss_pred cCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
.......+++.++++++..+.+.+.+....... ..+....|++.++|.+--+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 223456899999999999999998773221111 2346788999999988544
No 66
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.19 E-value=1.5e-05 Score=87.50 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=89.5
Q ss_pred HHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHH
Q 000447 153 DALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLC 232 (1497)
Q Consensus 153 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 232 (1497)
+.+..++++-+.+||++|+||||||+.+....+... ..+|.+|....-..-.++|.++-.. .
T Consensus 155 s~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~--------------~ 216 (554)
T KOG2028|consen 155 SLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN--------------E 216 (554)
T ss_pred HHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH--------------H
Confidence 344468899999999999999999999998775332 5577777554433334444433210 0
Q ss_pred HHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE--EeCchhh--hhhcCcccceEEecCCCHHHHHHHHHH
Q 000447 233 NRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRDV--LVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1497)
Q Consensus 233 ~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv--TTR~~~v--~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1497)
..+ -.+|.+|.+|+|..- .+-+. .+|...+|.-++| ||.+... .........++-+++|+.++...++.+
T Consensus 217 ~~l-~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 217 KSL-TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred Hhh-hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 112 258899999999543 22232 3556677887777 7776632 121345677899999999999999887
Q ss_pred Hh
Q 000447 307 VV 308 (1497)
Q Consensus 307 ~~ 308 (1497)
.+
T Consensus 293 ai 294 (554)
T KOG2028|consen 293 AI 294 (554)
T ss_pred HH
Confidence 54
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.4e-05 Score=95.15 Aligned_cols=192 Identities=12% Similarity=0.076 Sum_probs=112.9
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+.....++|.+..+..|..++...++. .+.++|+.|+||||+|+.+++..--...... ..+....+ -..+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHc
Confidence 345667899999999999888876654 6899999999999999999987532111000 00011111 111211
Q ss_pred HhCCCC---C--CCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEE-EEeCchhhhh
Q 000447 214 QLGLNF---C--EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKIL-VTSRRRDVLV 281 (1497)
Q Consensus 214 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTTR~~~v~~ 281 (1497)
....+. + .....+.+..+.+.+. .++.-++|+|++... ..++.+...+........+| .||....+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 111110 0 0111222333333332 256679999999766 45666655554333344444 4555455544
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHH
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 334 (1497)
........+.+.+++.++..+.+.+.+......- .++....|++.++|-+.-
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHH
Confidence 3233456799999999999999888764322211 244678899999998743
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.17 E-value=1.3e-05 Score=82.72 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000447 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1497)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 222 (1497)
||+..++++...+.....+.+.|+|++|+|||++|+++++.... .-..++++...+..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 67888899988887766778999999999999999999998742 12346666655443322222111100
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEcCCCCh-----hhhhhccCCCCC---CCCCeEEEEEeCchh
Q 000447 223 SDSERIMMLCNRLKREKKILVILDDIWTS-----LDLERTGIPFGD---VHRGCKILVTSRRRD 278 (1497)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~ilvTTR~~~ 278 (1497)
............++.+||+||++.. ..+......+.. ...+.+||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111111257789999999853 122222122211 136788888888654
No 69
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.17 E-value=3.9e-05 Score=90.70 Aligned_cols=183 Identities=13% Similarity=0.076 Sum_probs=107.8
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe--cCCcCHHHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV--SQTPDLKRIRREIAD 213 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~ 213 (1497)
.....++|+++.++.+..++.....+.+.|+|..|+||||+|+.+++..... .++. .++.+ +...... ...+.+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~-~~i~~~~~~~~~~~-~~~~~i~ 90 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRE-NFLELNASDERGID-VIRNKIK 90 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-cccc-ceEEeccccccchH-HHHHHHH
Confidence 3455688999999999999987666678999999999999999999886422 2221 22322 2221211 1111111
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh--hhhhccCCCCCCCCCeEEEEEeCch-hhhhhcCcccceE
Q 000447 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNY 290 (1497)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~ 290 (1497)
.+....+ .....+-+||+|+++... ....+...+......+++|+++... .+..........+
T Consensus 91 ~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 91 EFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 1110000 001345689999986552 2333433333333456677766432 2222111234478
Q ss_pred EecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 291 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
++.++++++....+.+.+...... -..+....+++.++|-+.-+.
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 999999999999988877422111 113467788999999876543
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.9e-05 Score=94.50 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=108.9
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCC-------------------cceEE
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVV 194 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 194 (1497)
+.....++|.+.....|...+..+++ +.+.++|++|+||||+|+.+++....... +..++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 34456788998888888887776665 56899999999999999999987532110 00122
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE
Q 000447 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV 272 (1497)
Q Consensus 195 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv 272 (1497)
.++.+....+.++ ++|.+..... .. .+++-++|+|++... ...+.+...+........+|+
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~~---------------p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGYR---------------PM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhhC---------------hh-cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2222222222221 1222211100 01 246779999998754 234444444433333444444
Q ss_pred EeCc-hhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCC-ChHHHHHHHHH
Q 000447 273 TSRR-RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGG-LPIAILTVART 341 (1497)
Q Consensus 273 TTR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~ 341 (1497)
+|.+ ..+..........+++.+++.++....+.+.+..... .-.++....|++.++| ++.|+..+..+
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4433 3343322334568899999999999998887732111 1113456788887765 46666665543
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=98.16 E-value=7.5e-05 Score=92.64 Aligned_cols=185 Identities=11% Similarity=0.082 Sum_probs=110.0
Q ss_pred CCCcccccchHHHHHHHHHHHcC----CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRG----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1497)
+.....++|+++.++++.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+. +-++.+...+.. .+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTAD-VIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccHH-HHHH
Confidence 33456789999999999999862 2367899999999999999999999763 332 223444332222 2222
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChhh------hhhccCCCCCCCCCeEEEEEeCchh-hhh-h
Q 000447 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD------LERTGIPFGDVHRGCKILVTSRRRD-VLV-S 282 (1497)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~ilvTTR~~~-v~~-~ 282 (1497)
++....... .+...++.+||+|+++.... +..+...+. ..+..||+|+.+.. ... .
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 222211110 01112678999999976521 333322222 12344666664332 111 0
Q ss_pred cCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 000447 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1497)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 342 (1497)
.......+++.+++.++....+.+.+......- ..++...|++.++|-.-.+......+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122346789999999999998888773221111 13567889999999776555443333
No 72
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4e-07 Score=102.57 Aligned_cols=186 Identities=24% Similarity=0.232 Sum_probs=97.8
Q ss_pred cccceEEEcccCCCCCCCC--cc-CCCCccEEEcCCCCCCCCCC-chhhcCCCCccEEEecCccCccCCcc--CCCCCCC
Q 000447 487 LKNCIAIFLHDINTGELPE--GL-EYPHLTSLCMNPKDPFLHIP-DNFFAGMPKLRVLVLTRMKLLTLPSS--FCHLPNL 560 (1497)
Q Consensus 487 ~~~~~~lsl~~~~~~~lp~--~~-~~~~Lr~L~L~~~~~~~~lp-~~~f~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L 560 (1497)
+++++.+++.++.....+. .. .|++++.|+|+.|-+....+ ..+...+++|+.|+|+.|.+...-++ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3456666666666555542 12 57777777777664422111 12335567777777777766522221 2255677
Q ss_pred CEEeccCCCCC--CC-cccCCCCCCcEEEeecCC-CcccchhhcCCCccCEEeccCCCCCCCcCh-hhhcCCCCCCEEEe
Q 000447 561 ESLCLDQCILG--DI-AIIGNLKNLEILSLCCSD-IEQLPREIGELTQLKLLDLSNCSKLKVIPP-NVISSLSQLEELYL 635 (1497)
Q Consensus 561 r~L~L~~~~l~--~l-~~i~~L~~L~~L~Ls~~~-l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~-~~l~~L~~L~~L~l 635 (1497)
+.|.|++|.++ ++ .....+++|+.|+|.+|. +..--.....+..|+.|||++|+. ...+. -.++.++.|+.|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhhhhc
Confidence 77777777664 22 344556667777776663 222122234456677777777663 33331 11566666777766
Q ss_pred cCCcccccccccccccCccChhhcCCCCCCcEEEeeccCCCCC
Q 000447 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVIL 678 (1497)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 678 (1497)
+.|.+..-.. . ...........++|++|++..|.+...
T Consensus 279 s~tgi~si~~-~----d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 279 SSTGIASIAE-P----DVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred cccCcchhcC-C----CccchhhhcccccceeeecccCccccc
Confidence 6665541000 0 001122234456677777766665433
No 73
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.6e-05 Score=93.58 Aligned_cols=185 Identities=13% Similarity=0.144 Sum_probs=110.3
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccC-------------------CcceEEE
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVF 195 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 195 (1497)
.....++|.+..++.+...+...++ +.+.++|+.|+||||+|+.+++...-.. .|.-.++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3456788999999999998876554 4678999999999999999998653110 1222333
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEE-E
Q 000447 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKIL-V 272 (1497)
Q Consensus 196 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-v 272 (1497)
++......++++ +++++.+ ...-..+++-++|+||+... ..++.+...+......+++| +
T Consensus 93 idaas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 93 IDAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred eecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 332222222211 1121111 11111257779999999755 34555555554443455555 4
Q ss_pred EeCchhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 000447 273 TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTV 338 (1497)
Q Consensus 273 TTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 338 (1497)
||....+..........+++.+++.++....+.+.+...... ..+.....|++.++|-+- |+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN-SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555444443223345789999999999888888765322111 123456788999998653 44444
No 74
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=6.5e-06 Score=105.06 Aligned_cols=105 Identities=23% Similarity=0.399 Sum_probs=82.2
Q ss_pred CccEEEecCccCc-cCCccCCCCCCCCEEeccCCCCC-CC-cccCCCCCCcEEEeecCCCc-ccchhhcCCCccCEEecc
Q 000447 536 KLRVLVLTRMKLL-TLPSSFCHLPNLESLCLDQCILG-DI-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLS 611 (1497)
Q Consensus 536 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~Ls~~~l~-~LP~~i~~L~~L~~L~Ls 611 (1497)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+ ..++.+++|++|+|++|++. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4777888888887 67888888888888888888875 34 57888888888888888887 678888888889999888
Q ss_pred CCCCCCCcChhhhcC-CCCCCEEEecCCccc
Q 000447 612 NCSKLKVIPPNVISS-LSQLEELYLGNTSVE 641 (1497)
Q Consensus 612 ~~~~l~~lp~~~l~~-L~~L~~L~l~~~~~~ 641 (1497)
+|.....+|.. ++. +.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 88866678877 544 356777888777543
No 75
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=5.5e-05 Score=91.51 Aligned_cols=181 Identities=10% Similarity=0.112 Sum_probs=110.3
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhcc-------------------CCcceEEE
Q 000447 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEG-------------------RIFDEVVF 195 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 195 (1497)
....+++|.+..++.+..++..+++. .+.++|+.|+||||+|+.++...--. ..+.-++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 34667889998888888888766665 79999999999999999998754210 01112233
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEE
Q 000447 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT 273 (1497)
Q Consensus 196 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT 273 (1497)
++.+....++++. ++.+..... -+ .+++-++|+|++... ...+.+...+......+++|++
T Consensus 90 idaas~~~vddIR-~Iie~~~~~---------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 90 IDAASNTSVDDIK-VILENSCYL---------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred EecccCCCHHHHH-HHHHHHHhc---------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 3333333332221 222211100 00 146678999998665 3345554444444455666655
Q ss_pred e-CchhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHH
Q 000447 274 S-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1497)
Q Consensus 274 T-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 334 (1497)
| ..+.+..........+++.+++.++..+.+.+.+......- .++....|++.++|-+-.
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRN 213 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 5 44444432233456889999999999999988775322211 134567889999887743
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.09 E-value=1.8e-05 Score=100.83 Aligned_cols=172 Identities=16% Similarity=0.192 Sum_probs=99.7
Q ss_pred CCcccccchHHHHH---HHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000447 136 EGHEFIESRESILN---DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1497)
....+|+|++..+. .+...+..++...+.++|++|+||||+|+.+++... ..|. .++... ....++ ++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di-r~-- 95 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL-RA-- 95 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH-HH--
Confidence 34566788887764 455666667777889999999999999999998764 3331 111110 011110 11
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHh-cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEE--eCchh--hhhhcCc
Q 000447 213 DQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT--SRRRD--VLVSEMH 285 (1497)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT--TR~~~--v~~~~~~ 285 (1497)
.+....+.+. .+++.+||+|||+.. ..++.+...+ ..|..++|+ |++.. +......
T Consensus 96 --------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 96 --------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred --------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 1111111111 146779999999754 3455544322 245656653 44331 2221122
Q ss_pred ccceEEecCCCHHHHHHHHHHHhCC------CCCCchHHHHHHHHHHHhCCChH
Q 000447 286 CQNNYCVSVLNKEEAWSLFSKVVGN------CVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 286 ~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
....+.+++++.++...++.+.+.. .....-.++....|++.+.|-.-
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 3567999999999999999887631 11111224556778888887643
No 77
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.07 E-value=7.3e-05 Score=80.52 Aligned_cols=159 Identities=15% Similarity=0.091 Sum_probs=94.8
Q ss_pred HHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccC--------------------CcceEEEEEecC-CcCHHHH
Q 000447 150 DILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR--------------------IFDEVVFAEVSQ-TPDLKRI 207 (1497)
Q Consensus 150 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs~-~~~~~~~ 207 (1497)
.+.+.+...++ ..+.++|+.|+||||+|+.+.+..-... +.|. .++.... ...+ +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 34555555555 6799999999999999999998864221 1111 2222111 1111 11
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCch-hhhhhcC
Q 000447 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEM 284 (1497)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~ 284 (1497)
.+++.+.+.... . .+.+-++|+||+... ..++.+...+......+.+|++|++. .+.....
T Consensus 81 i~~i~~~~~~~~---------------~-~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 81 VRELVEFLSRTP---------------Q-ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHccCc---------------c-cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 122222221100 0 156778999998665 33555555554444566677766644 2222112
Q ss_pred cccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH
Q 000447 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 285 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
.....+++.+++.++..+.+.+. | . + .+.+..|++.++|.|.
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g--i-~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G--I-S---EEAAELLLALAGGSPG 186 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C--C-C---HHHHHHHHHHcCCCcc
Confidence 23468999999999999888876 3 1 1 3568899999999885
No 78
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.07 E-value=5.8e-06 Score=91.65 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=63.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC--cCHHHHHHHHHHHhCCCCCCCChHH------H-HH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLNFCEESDSE------R-IM 229 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~-~~ 229 (1497)
+-..++|+|++|+|||||++.+++..... +|+.++|+.+.++ .++.++++.+...+-...-+.+... . ..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44579999999999999999999988744 8999999998777 7899999998332211111111111 1 11
Q ss_pred HHHHHHhcCCeEEEEEcCCCCh
Q 000447 230 MLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 230 ~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
.......++++.++++|++..-
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 1222223479999999999544
No 79
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.07 E-value=6.5e-05 Score=79.64 Aligned_cols=172 Identities=16% Similarity=0.122 Sum_probs=90.1
Q ss_pred CCCcccccchHHHHHHHHHHHc-----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1497)
+....+|+|.+..++.+--++. ++...-+.+||++|+||||||..+++.... .|. +.+...-....++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--~~~---~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV--NFK---ITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--CeE---eccchhhhhHHHH-H
Confidence 5567789999988877654443 345778999999999999999999998752 232 2222110111111 1
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh--h-------hhhccCCC-CCCC-----------CCe
Q 000447 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--D-------LERTGIPF-GDVH-----------RGC 268 (1497)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~-------~~~l~~~l-~~~~-----------~gs 268 (1497)
.++. .+ +++-+|.+|++.... + .++....+ ...+ +-+
T Consensus 94 ~il~--------------------~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 94 AILT--------------------NL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHHH--------------------T----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHHH--------------------hc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1221 22 244466677775441 0 11111000 0111 123
Q ss_pred EEEEEeCchhhhhhcCcc--cceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 269 KILVTSRRRDVLVSEMHC--QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 269 ~ilvTTR~~~v~~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
-|=-|||...+... +.. ....+++..+.+|-.++..+.++--.. .-.++.+.+|++++.|-|--..
T Consensus 152 ligATTr~g~ls~p-LrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 152 LIGATTRAGLLSSP-LRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp EEEEESSGCCTSHC-CCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHH
T ss_pred Eeeeeccccccchh-HHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHH
Confidence 35558887766552 322 234589999999999999887643221 2235678999999999995443
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=7e-05 Score=93.24 Aligned_cols=196 Identities=11% Similarity=0.107 Sum_probs=112.2
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCc--ceEEEEEecCCcCHHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIF--DEVVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~ 212 (1497)
....+++|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+++..--.... ..... ..+.....-+.|.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~ 88 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDID 88 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHH
Confidence 4466788999988899998886665 567999999999999999998765311100 00000 0111112222221
Q ss_pred HHhCCC-----CCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEe-Cchhhh
Q 000447 213 DQLGLN-----FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVL 280 (1497)
Q Consensus 213 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v~ 280 (1497)
..-..+ .......+.+..+.+... .++.-++|+|+|+.. ..++.+...+.......++|++| ....+.
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 100000 000111222333333322 245668999999776 34555555554434455665554 444444
Q ss_pred hhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
.........+++.+++.++..+.+.+.+......-+ .+..+.|++.++|-+--+.
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 322344578999999999999999887743222111 3456788999998774443
No 81
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.06 E-value=9.3e-06 Score=93.21 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=66.2
Q ss_pred HHHHHc-CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCCCChHHH
Q 000447 151 ILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCEESDSER 227 (1497)
Q Consensus 151 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~ 227 (1497)
+++.+. =.+-....|+|++|+||||||+++|+..... +|+.++||.+.+.. ++.++++.+...+-....+++....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 444443 1233468999999999999999999998754 89999999998887 7778888876322111111221111
Q ss_pred ------HHHHHHHH-hcCCeEEEEEcCCCCh
Q 000447 228 ------IMMLCNRL-KREKKILVILDDIWTS 251 (1497)
Q Consensus 228 ------~~~l~~~l-~~~k~~LlVlDdv~~~ 251 (1497)
+-...+++ ..+++++|++|++...
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11122222 3479999999999544
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=4.3e-05 Score=94.55 Aligned_cols=179 Identities=11% Similarity=0.128 Sum_probs=108.0
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCC-------------------cceEE
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVV 194 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 194 (1497)
+.....++|++..+..|..++..+++ +.+.++|+.|+||||+|+.+++..--... |.-++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 44566789999999999999886664 47899999999999999999886531111 10111
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----hcCCeEEEEEcCCCChh--hhhhccCCCCCCCCCe
Q 000447 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTSL--DLERTGIPFGDVHRGC 268 (1497)
Q Consensus 195 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 268 (1497)
.++......+ +.+..+.+.. ..+++-++|+|++.... ....+...+......+
T Consensus 92 EidaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v 150 (709)
T PRK08691 92 EIDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (709)
T ss_pred EEeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCc
Confidence 2221111111 2222222211 12567799999997653 2333333333223455
Q ss_pred EEEEEeCch-hhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 269 KILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 269 ~ilvTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
++|++|.+. .+.....+....+++.+++.++....+.+.+......- ..+..+.|++.++|-+.-+
T Consensus 151 ~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 151 KFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHH
Confidence 666666433 33322233445778889999999999988774322111 1345778999999887443
No 83
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=4.3e-05 Score=92.19 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=114.8
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE-ecCCcCHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE-VSQTPDLKRIRREIA 212 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~ 212 (1497)
+.....++|.+..++.|..++..++++ .+.++|+.|+||||+|+.+++...-....+...|.. +.........-+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 334567889999999999988876665 588999999999999999998774221111111110 011111111122221
Q ss_pred HHhCCCC-----CCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEe-Cchhhh
Q 000447 213 DQLGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVL 280 (1497)
Q Consensus 213 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v~ 280 (1497)
..-..+. ......+.+..+.+.+. .+++-++|+|++... ..++.+...+......+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 1111100 00111233333444442 246678999998765 35666655555444566666554 444443
Q ss_pred hhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
.........+++.++++++..+.+...+..... .-..+.+..|++.++|-+--+.
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 311223457899999999999888887632111 1124567889999999775443
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=8.2e-06 Score=94.79 Aligned_cols=158 Identities=13% Similarity=0.155 Sum_probs=77.1
Q ss_pred ccccEEEEecCCCCcccHHHHhhcCCccEEEEE-ccceEEeecchhhhhhccccccccEEEeCCCCCCchhhccCCcchh
Q 000447 1098 QNLKILEVVNDKSDNFPICFLQYFKNLEKLELR-WSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDS 1176 (1497)
Q Consensus 1098 ~~L~~L~l~~c~~~~~~~~~l~~l~sL~~L~I~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~ 1176 (1497)
.+++.|++++|.++.+|. -..+|++|.|+ |++++.++. ..+++|+.|.+++|.++..+
T Consensus 52 ~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~--------~LP~nLe~L~Ls~Cs~L~sL--------- 110 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPG--------SIPEGLEKLTVCHCPEISGL--------- 110 (426)
T ss_pred cCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCc--------hhhhhhhheEccCccccccc---------
Confidence 445555555555555541 11356666666 666655442 12456777777777666554
Q ss_pred hccccceeEeec--cCCccccCCCCcccCcccEEEEecCCCCccccchhhhhccccccEEEEccCccchhhhccCCCccc
Q 000447 1177 VVENLEMLEVWW--CDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAE 1254 (1497)
Q Consensus 1177 ~l~~L~~L~i~~--C~~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~l~~~~~~~~~~~~ 1254 (1497)
.++|+.|++.+ |..+..+| ++|+.|.+.++.......... .-.++|+.|.|++|..+. ++.
T Consensus 111 -P~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~------- 173 (426)
T PRK15386 111 -PESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPE------- 173 (426)
T ss_pred -ccccceEEeCCCCCcccccCc------chHhheecccccccccccccc--ccCCcccEEEecCCCccc-Ccc-------
Confidence 12355555542 23344443 346666664332111110000 012567777777776442 111
Q ss_pred cccccccccccccccccc-cceecCCcccccCCCccEEEEccCCCC
Q 000447 1255 DEIVFSKLKWLSLENLES-LTSFYSGNYTFKFPCLEDLFVIECPNM 1299 (1497)
Q Consensus 1255 ~~~~l~sL~~L~l~~c~~-L~~l~~~~~~~~~~sL~~L~I~~Cp~L 1299 (1497)
..+.+|+.|.+..+.. -..++....+ +++ .|.+.+|-++
T Consensus 174 --~LP~SLk~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n~lkL 213 (426)
T PRK15386 174 --KLPESLQSITLHIEQKTTWNISFEGFP---DGL-DIDLQNSVLL 213 (426)
T ss_pred --cccccCcEEEecccccccccCcccccc---ccc-Eechhhhccc
Confidence 1345777777765321 1112222222 455 7777777554
No 85
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=6.4e-05 Score=92.20 Aligned_cols=197 Identities=13% Similarity=0.095 Sum_probs=110.7
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+....+++|++..++.+..++..+++ +.+.++|+.|+||||+|+.+++...-.. |... ..+......+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHc
Confidence 34566788999999999999875544 4788999999999999999998764211 2111 01111122222211
Q ss_pred HhCCCC---C--CCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE-EeCchhhhh
Q 000447 214 QLGLNF---C--EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLV 281 (1497)
Q Consensus 214 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~ 281 (1497)
....+. + .....+.+..+.+.+. .+++-++|+|+++.. ..+..+...+......+.+|+ |+....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 111000 0 0011122222222221 134557999998764 345555444433334555554 444444433
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH-HHHHHH
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVA 339 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 339 (1497)
........+++.++++++....+.+.+...... -..+.+..+++.++|-+- |+..+-
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 223345688999999999999988876422111 113457788999999664 444333
No 86
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=7.9e-06 Score=104.28 Aligned_cols=104 Identities=28% Similarity=0.370 Sum_probs=69.4
Q ss_pred CCCEEeccCCCCCC-C-cccCCCCCCcEEEeecCCCc-ccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEe
Q 000447 559 NLESLCLDQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL 635 (1497)
Q Consensus 559 ~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~l~-~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l 635 (1497)
.++.|+|++|.+.. + ..+++|++|++|+|++|.+. .+|..++.+++|+.|+|++|+....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 36677777777753 2 56777777777777777776 67777777777777777777644566665 777777777777
Q ss_pred cCCcccccccccccccCccChhhcCC-CCCCcEEEeeccC
Q 000447 636 GNTSVEWEFEGLNLERNNASLQELSI-LSHLTTLEIHIRD 674 (1497)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~-L~~L~~L~l~~~~ 674 (1497)
++|.+.+..+ ..++. ..++..+++.+|.
T Consensus 498 s~N~l~g~iP-----------~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVP-----------AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCC-----------hHHhhccccCceEEecCCc
Confidence 7777663332 33333 2345566666554
No 87
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.02 E-value=1.6e-05 Score=90.68 Aligned_cols=287 Identities=21% Similarity=0.216 Sum_probs=177.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCc-ceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1497)
..+.+.++|.|||||||++-++.. .+ ..| +.+..+....-.+...+.-.....++..... -...++.+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-
Confidence 347899999999999999999998 43 446 4556666666666666666666667665332 1233445555554
Q ss_pred CCeEEEEEcCCCChhh-hhhccCCCCCCCCCeEEEEEeCchhhhhhcCcccceEEecCCCHH-HHHHHHHHHhCC----C
Q 000447 238 EKKILVILDDIWTSLD-LERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSVLNKE-EAWSLFSKVVGN----C 311 (1497)
Q Consensus 238 ~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~----~ 311 (1497)
++|.++|+||..+..+ -..+...+..+...-.|+.|+|.... ........+++|+.. ++.++|...+.. -
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 7999999999877632 22222223334445568889887753 334556778888754 799999877731 1
Q ss_pred CCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHH----HHHHHHHHHhhccCccc--hHHHHHhHHHHHhccCCcc
Q 000447 312 VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFV----WKKALQELRFSARNFTG--LEALLGSTIELIYNYLEGE 385 (1497)
Q Consensus 312 ~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~----w~~~l~~l~~~~~~~~~--~~~~~~~~l~lsy~~L~~~ 385 (1497)
.-.......+.+|.++..|.|++|..+++..+.-...+ .++-...+.. ...... ....+ ..+..||.-|...
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~-~~r~a~~~~qtl~-asl~ws~~lLtgw 240 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTG-GARLAVLRQQTLR-ASLDWSYALLTGW 240 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhc-ccccchhHHHhcc-chhhhhhHhhhhH
Confidence 11223345688999999999999999999887654432 2222222221 111111 11245 8899999999988
Q ss_pred chhhhhhhhcccCCCCCcchhhHhhhcccccccc--chhhHHHHHHHHHHHHHHHhhccccccCC--CcCceeehhhHHH
Q 000447 386 ELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFE--DIYTMQERRDRVYALVRGLKDTCLLHDDD--TADWFSMLGFVRN 461 (1497)
Q Consensus 386 ~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~--~~~~~e~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~mHdlv~d 461 (1497)
+ +--|--++.|... +..+ ...|.+.|-.. +.+ .+..-+..+++.+++.-.+ ....|+.-+-+|.
T Consensus 241 e-~~~~~rLa~~~g~--f~~~--l~~~~a~g~~~~~~~y-------~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~ 308 (414)
T COG3903 241 E-RALFGRLAVFVGG--FDLG--LALAVAAGADVDVPRY-------LVLLALTLLVDKSLVVALDLLGRARYRLLETGRR 308 (414)
T ss_pred H-HHHhcchhhhhhh--hccc--HHHHHhcCCccccchH-------HHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Confidence 5 8888888888873 3332 23343333221 111 1122355677888775432 2235666666777
Q ss_pred HHHHHhhc
Q 000447 462 VAISIASI 469 (1497)
Q Consensus 462 ~a~~~~~~ 469 (1497)
|+..+-.+
T Consensus 309 YalaeL~r 316 (414)
T COG3903 309 YALAELHR 316 (414)
T ss_pred HHHHHHHh
Confidence 76665444
No 88
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00011 Score=86.20 Aligned_cols=199 Identities=14% Similarity=0.048 Sum_probs=116.6
Q ss_pred cCCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCC--cceEEEEEecCCcCHHHHHHH
Q 000447 134 YNEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI--FDEVVFAEVSQTPDLKRIRRE 210 (1497)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~ 210 (1497)
.+.....++|.++..+.+...+...+. ..+.|+|+.|+||||+|..+++..-.... +.... ...........+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHH
Confidence 344566789999999999999886654 46999999999999999999987642110 11110 0111111122233
Q ss_pred HHHHhC-------CCCC-------CCChHHHHHHHHHHHh----cCCeEEEEEcCCCChh--hhhhccCCCCCCCCCeE-
Q 000447 211 IADQLG-------LNFC-------EESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCK- 269 (1497)
Q Consensus 211 i~~~l~-------~~~~-------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~- 269 (1497)
+...-. ...+ ..-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 322210 0000 0111344445555544 2577799999997652 23333333322223344
Q ss_pred EEEEeCchhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 270 ILVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 270 ilvTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
|++|++...+..........+++.+++.++..+++.+.... .. -..+....|++.++|.|.....+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555544444322334568999999999999999874322 11 11345678999999999866543
No 89
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=4.1e-06 Score=71.30 Aligned_cols=58 Identities=40% Similarity=0.615 Sum_probs=32.1
Q ss_pred CCcEEEeecCCCcccch-hhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCc
Q 000447 581 NLEILSLCCSDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTS 639 (1497)
Q Consensus 581 ~L~~L~Ls~~~l~~LP~-~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 639 (1497)
+|++|++++|+++.+|. .+..+++|++|++++|. +..++++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555553 34555555555555554 555555555555555555555553
No 90
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.01 E-value=0.00016 Score=86.84 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=109.7
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhcc--------------------CCcceEE
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--------------------RIFDEVV 194 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 194 (1497)
.....++|.++.++.+.+++...+. +.+.++|++|+||||+|+.++....-. .+++. +
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 3455678999999999999876554 478899999999999999999875311 01221 2
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE
Q 000447 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV 272 (1497)
Q Consensus 195 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv 272 (1497)
+++-.......+ .+++...+... .. .+++-++|+|+++.. ...+.+...+......+.+|+
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~---------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYA---------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcC---------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 222221111111 11222221100 00 145668999998654 334445444443344666666
Q ss_pred EeCchh-hhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 273 TSRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 273 TTR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
+|.+.. +..........+++.++++++..+.+..++...... -..+.+..+++.++|-|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHH
Confidence 665443 222112334578899999999999988876321111 11356778899999988655443
No 91
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00016 Score=85.35 Aligned_cols=196 Identities=15% Similarity=0.055 Sum_probs=114.2
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceE------EEEEecCCcCHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEV------VFAEVSQTPDLKRI 207 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~------~wv~vs~~~~~~~~ 207 (1497)
+.....++|.++.++.+.+.+..++++ .+.++|+.|+||+|+|..+++..--....... .-..+.... ..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~ 91 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PV 91 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hH
Confidence 445567899999999999988876654 69999999999999999999876422111000 000000000 11
Q ss_pred HHHHHHHhCCC-------C-------CCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCC
Q 000447 208 RREIADQLGLN-------F-------CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRG 267 (1497)
Q Consensus 208 ~~~i~~~l~~~-------~-------~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g 267 (1497)
-+.|...-..+ . ...-..+.+..+.+.+. .+++.++|+||++.. .....+...+.....+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11111100000 0 00112234444444443 257779999998765 2334444444333345
Q ss_pred eEEEEEeCch-hhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 268 CKILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 268 s~ilvTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
+.+|++|.+. .+..........+.+.+++.++..+++.+..+.. . ......+++.++|.|.....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 6666666655 3333223446689999999999999998865321 1 112267899999999865544
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00013 Score=86.86 Aligned_cols=172 Identities=13% Similarity=0.057 Sum_probs=105.5
Q ss_pred cccccchHHHHHHHHHHHcCCC----------eEEEEEEcCCCchHHHHHHHHHHHHhccC-------------------
Q 000447 138 HEFIESRESILNDILDALRGPY----------VYMIGVYGMAGIGKTTLVKEVARLAKEGR------------------- 188 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------- 188 (1497)
...++|.+..++.|..++..+. .+.+.++|+.|+|||++|+.+++..--..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3467899999999999887542 46788999999999999999988653111
Q ss_pred CcceEEEEEec-CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCC
Q 000447 189 IFDEVVFAEVS-QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPF 261 (1497)
Q Consensus 189 ~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l 261 (1497)
|.| +.++... ....+ +.+..+.+.+. .+++-++|+|+++.. .....+...+
T Consensus 84 hpD-~~~i~~~~~~i~i---------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 84 HPD-VRVVAPEGLSIGV---------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCC-EEEeccccccCCH---------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 111 1122111 11111 22223333222 246668888998765 2333444444
Q ss_pred CCCCCCeEEEEEeCch-hhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 262 GDVHRGCKILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 262 ~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
.....+..+|++|.+. .+..........+.+.+++.++..+.+.+..+. + .+.++.+++.++|.|.....
T Consensus 142 Eep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHH
Confidence 3334456566655553 444322334568999999999999988754431 1 34477899999999965543
No 93
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.00 E-value=5.6e-06 Score=70.48 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=5.5
Q ss_pred ccEEEecCccCccC
Q 000447 537 LRVLVLTRMKLLTL 550 (1497)
Q Consensus 537 Lr~L~L~~~~i~~l 550 (1497)
|++|++++|.+..+
T Consensus 3 L~~L~l~~n~l~~i 16 (61)
T PF13855_consen 3 LESLDLSNNKLTEI 16 (61)
T ss_dssp ESEEEETSSTESEE
T ss_pred CcEEECCCCCCCcc
Confidence 33344444433333
No 94
>PRK08727 hypothetical protein; Validated
Probab=97.99 E-value=6.3e-05 Score=83.63 Aligned_cols=160 Identities=15% Similarity=0.084 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHH
Q 000447 147 ILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSE 226 (1497)
Q Consensus 147 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 226 (1497)
.+..+.....+.....+.|+|..|+|||+||+.+++....+ ...+.++++.+ ....+
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~--------------- 84 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL--------------- 84 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH---------------
Confidence 34433333333334569999999999999999999886533 23556665322 11111
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCChh---hhhhccCCCCC--CCCCeEEEEEeCchhh---------hhhcCcccceEEe
Q 000447 227 RIMMLCNRLKREKKILVILDDIWTSL---DLERTGIPFGD--VHRGCKILVTSRRRDV---------LVSEMHCQNNYCV 292 (1497)
Q Consensus 227 ~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~l~~--~~~gs~ilvTTR~~~v---------~~~~~~~~~~~~l 292 (1497)
....+.+ .+.-+||+||+.... .|......+.. ..+|..||+|++...- .. .+.....+++
T Consensus 85 --~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S-Rl~~~~~~~l 159 (233)
T PRK08727 85 --RDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS-RLAQCIRIGL 159 (233)
T ss_pred --HHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH-HHhcCceEEe
Confidence 1122233 244589999986542 23321111211 1245669999985421 11 2333558899
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 293 SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 293 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
++++.++-.+++++++....- .-.+++...|++.++|-.-.+
T Consensus 160 ~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 160 PVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 999999999999987742111 112456677888887665443
No 95
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=7.3e-05 Score=93.20 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=112.7
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+....+++|.+..++.|...+..+++. .+.++|+.|+||||+|+.+++..--...+. ...+......+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc
Confidence 345667899999999999888866654 568999999999999999998764211100 011111122222211
Q ss_pred HhCC-----CCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE-EeCchhhhh
Q 000447 214 QLGL-----NFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLV 281 (1497)
Q Consensus 214 ~l~~-----~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~ 281 (1497)
.-.. +.......+.+..+.+.+. .+++-++|+|++... ...+.+...+.......++|+ ||....+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 1000 0000011222333333322 357779999999765 344444443433333445544 555454443
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
........+++.+++.++..+.+.+.+....... .....+.|++.++|.+--+..+
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 2233467899999999999999988763221111 1345678999999987644433
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=7.5e-05 Score=92.01 Aligned_cols=183 Identities=11% Similarity=0.154 Sum_probs=109.1
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCC-------------------cceEE
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVV 194 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 194 (1497)
+....+++|.+..++.|..++..++++ .+.++|+.|+||||+|+.+++..--... |.-++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 345667899999999999999866654 5789999999999999999987632111 11122
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE
Q 000447 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV 272 (1497)
Q Consensus 195 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv 272 (1497)
.++......++++ +++++.+... -..++.-++|+|+|... ...+.+...+......+++|+
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 3332222222222 1222221110 01256678999999765 344444444433334566665
Q ss_pred Ee-CchhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 273 TS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 273 TT-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
+| ....+..........+++.+++.++....+.+.+.......+ .+....|++.++|-+.-+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDA 217 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHH
Confidence 54 433433322233457889999999888877776632211111 334667888998877543
No 97
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.96 E-value=2e-05 Score=84.89 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHHHc---CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 000447 140 FIESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 187 (1497)
.|+||+++++++.+.+. ....+.+.|+|++|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999993 4567899999999999999999999988755
No 98
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.95 E-value=0.00012 Score=87.72 Aligned_cols=177 Identities=19% Similarity=0.211 Sum_probs=103.7
Q ss_pred cCCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000447 134 YNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1497)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1497)
+......+.|+++.++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~ 189 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG 189 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch
Confidence 34455678899999999888764 1 2245699999999999999999998764 223 22211
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh----------------hhhhccCCCC--
Q 000447 201 TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------------DLERTGIPFG-- 262 (1497)
Q Consensus 201 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~l~-- 262 (1497)
.++.... .+ ........+.+......+.+|++||++... .+..+...+.
T Consensus 190 ----~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ----SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ----HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 1111111 00 011223333334444577899999987541 1111111111
Q ss_pred CCCCCeEEEEEeCchhhhhhcC----cccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh
Q 000447 263 DVHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 263 ~~~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1497)
....+.+||.||......+..+ .....+.++..+.++..++|+.++.......+. -...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 1124677888887554333211 224578999999999999999887533222111 1346777777764
No 99
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.95 E-value=0.00025 Score=92.95 Aligned_cols=258 Identities=17% Similarity=0.226 Sum_probs=147.2
Q ss_pred ccchHHHHHHHHHHHc---CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-CCcceEEEEEecCCcC---HHHHHHHHHH
Q 000447 141 IESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVFAEVSQTPD---LKRIRREIAD 213 (1497)
Q Consensus 141 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~---~~~~~~~i~~ 213 (1497)
++||+.+++.|...+. ...-.++.|.|..|||||+++++|......+ ..|-...+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6799999999999887 3556799999999999999999999877533 1121111111111111 1222233322
Q ss_pred Hh-------------------CCCCCC-----------------------CChHH-----HHHHHHHHHhcCCeEEEEEc
Q 000447 214 QL-------------------GLNFCE-----------------------ESDSE-----RIMMLCNRLKREKKILVILD 246 (1497)
Q Consensus 214 ~l-------------------~~~~~~-----------------------~~~~~-----~~~~l~~~l~~~k~~LlVlD 246 (1497)
++ +..... ..... ....+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 111000 00011 11122233334679999999
Q ss_pred CC-CChh-h---hhhccCCCCC-CCCCeEEEEEeCchhh---hhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchH
Q 000447 247 DI-WTSL-D---LERTGIPFGD-VHRGCKILVTSRRRDV---LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDL 317 (1497)
Q Consensus 247 dv-~~~~-~---~~~l~~~l~~-~~~gs~ilvTTR~~~v---~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 317 (1497)
|+ |-+. . .+.+...... ...-..|..+...... ..........+.+.||+..+.-.+.....+.....+
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~-- 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP-- 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc--
Confidence 98 3221 1 1111111100 0001123333332222 111233456899999999999999999887633222
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhcCCC------hH-HHHHHHHHHHhhccCccchHHHHHhHHHHHhccCCccchhhh
Q 000447 318 QTVAIQVANECGGLPIAILTVARTLRNKP------LF-VWKKALQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLT 390 (1497)
Q Consensus 318 ~~~~~~i~~~c~glPLai~~~~~~L~~~~------~~-~w~~~l~~l~~~~~~~~~~~~~~~~~l~lsy~~L~~~~lk~c 390 (1497)
.+....|.++..|.|+-+.-+-..+.... +. .|+.=..++. .....+++. ..+..-.+.||.. .++.
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~~~vv-~~l~~rl~kL~~~-t~~V 313 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATTDAVV-EFLAARLQKLPGT-TREV 313 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----CchhhHHHH-HHHHHHHhcCCHH-HHHH
Confidence 35678999999999999998888886542 11 2543322222 122233344 5678888999988 5999
Q ss_pred hhhhcccCCCCCcchhhH
Q 000447 391 FLLCSLMKHPCDAPIMDL 408 (1497)
Q Consensus 391 fl~~s~fp~~~~~~i~~l 408 (1497)
+..-|++-. .++.+-|
T Consensus 314 l~~AA~iG~--~F~l~~L 329 (849)
T COG3899 314 LKAAACIGN--RFDLDTL 329 (849)
T ss_pred HHHHHHhCc--cCCHHHH
Confidence 999999876 3444333
No 100
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=1.3e-05 Score=93.19 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=92.7
Q ss_pred HhhcCCccEEEEE-ccceEEeecchhhhhhccccccccEEEeCCCCCCchhhccCCcchhhccccceeEeeccCCccccC
Q 000447 1118 LQYFKNLEKLELR-WSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLV 1196 (1497)
Q Consensus 1118 l~~l~sL~~L~I~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~ 1196 (1497)
+..+..++.|+|+ | .+++++. .+++|++|.+++|.+|+.+++. + .++|++|.|++|..+..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---------LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---------CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCcccccccc
Confidence 4557899999999 6 7887763 4678999999999999887432 2 3589999999998887776
Q ss_pred CCCcccCcccEEEEecCCCCccccchhhhhccccccEEEEccCccchhhhccCCCcccccccccccccccccccccccee
Q 000447 1197 PSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSF 1276 (1497)
Q Consensus 1197 ~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l 1276 (1497)
+ +|+.|.+. |..+..+. .++ ++|++|.+.++...... ......+++|+.|.+.+|..+. +
T Consensus 112 ~------sLe~L~L~-~n~~~~L~--~LP---ssLk~L~I~~~n~~~~~-------~lp~~LPsSLk~L~Is~c~~i~-L 171 (426)
T PRK15386 112 E------SVRSLEIK-GSATDSIK--NVP---NGLTSLSINSYNPENQA-------RIDNLISPSLKTLSLTGCSNII-L 171 (426)
T ss_pred c------ccceEEeC-CCCCcccc--cCc---chHhheecccccccccc-------ccccccCCcccEEEecCCCccc-C
Confidence 4 47777775 34333321 111 45778887553311110 0011246789999999998663 4
Q ss_pred cCCcccccCCCccEEEEccCC
Q 000447 1277 YSGNYTFKFPCLEDLFVIECP 1297 (1497)
Q Consensus 1277 ~~~~~~~~~~sL~~L~I~~Cp 1297 (1497)
|.+ ++ .+|+.|.+..+.
T Consensus 172 P~~-LP---~SLk~L~ls~n~ 188 (426)
T PRK15386 172 PEK-LP---ESLQSITLHIEQ 188 (426)
T ss_pred ccc-cc---ccCcEEEecccc
Confidence 432 22 589999987753
No 101
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00013 Score=90.59 Aligned_cols=176 Identities=13% Similarity=0.143 Sum_probs=106.8
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccC-------------------CcceEEE
Q 000447 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVF 195 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 195 (1497)
.....++|.+..++.+..++...+.. .+.++|+.|+||||+|+.+++..--.. .|.-+++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 34567889999999999988866554 578999999999999999998763111 1111222
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCChh--hhhhccCCCCCCCCCeE
Q 000447 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCK 269 (1497)
Q Consensus 196 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 269 (1497)
++.+....+ +.+..+.+... .+++-++|+|+++... ..+.+...+......+.
T Consensus 93 i~~~~~~~v---------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 93 VDAASNTQV---------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eeccccCCH---------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 222211121 22222222221 2567799999997653 34444444443334555
Q ss_pred EEEEe-CchhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH
Q 000447 270 ILVTS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 270 ilvTT-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
+|++| ....+..........+++.+++.++..+.+.+.+....... .....+.|++.++|.+-
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr 215 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 55555 43333321122356789999999999988887764221111 13456788999999774
No 102
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00013 Score=90.00 Aligned_cols=199 Identities=11% Similarity=0.095 Sum_probs=112.5
Q ss_pred CCcccccchHHHHHHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
....+++|.+..++.|..++..++ ...+.++|+.|+||||+|+.+++..--....+. ..++....-+.|...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g 85 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQG 85 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcC
Confidence 345677898888888888887655 467889999999999999999987642111100 011111111122111
Q ss_pred hCCCC---C--CCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCc-hhhhhh
Q 000447 215 LGLNF---C--EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVS 282 (1497)
Q Consensus 215 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~ 282 (1497)
...+. + .....+.+..+.+.+. .+++-++|+|++... ..++.+...+........+|++|.+ ..+...
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 10000 0 0001122222222221 256779999999765 3445554444333334555555544 444322
Q ss_pred cCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 000447 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTVARTL 342 (1497)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~L 342 (1497)
.......+++.+++.++....+.+.+...... -..+.++.|++..+|-+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12334578999999999999988866422111 11345778899999854 6777666544
No 103
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00029 Score=91.12 Aligned_cols=192 Identities=12% Similarity=0.033 Sum_probs=109.1
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
....+++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++..--....+. ..+.....-+.|...
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g 84 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPG 84 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcC
Confidence 34567889999999999998866654 6889999999999999999987642111100 000001111111100
Q ss_pred h-------CCCCCCCChHHHHHHHHHHH----hcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEe-Cchhhh
Q 000447 215 L-------GLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVL 280 (1497)
Q Consensus 215 l-------~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v~ 280 (1497)
- ..+.......+.+..+.+.+ ..+++-++|||+++.. ..++.|...+..-...+.+|++| ....+.
T Consensus 85 ~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 0 00000001112222222221 1256668999999766 34555555554444556666555 444444
Q ss_pred hhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
.........+++..++.++..+.+.+.+....... -.+....|++.++|-+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 32233456889999999999988888763222111 1334668899999977433
No 104
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.0005 Score=79.26 Aligned_cols=204 Identities=14% Similarity=0.117 Sum_probs=123.4
Q ss_pred CcccccchHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000447 137 GHEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1497)
.+..+.||+.+++.+-+|+. .+..+-+-|.|-+|.|||.+...++.+......=-.+++++...-....++...|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 35678899999999999876 35567899999999999999999998875322223456777666567778888888
Q ss_pred HHhCCCCC-CCChHHHHHHHHHHHhcCC-eEEEEEcCCCChhh--hhhccCCCC-CCCCCeEEEEEeCch--hhhhh---
Q 000447 213 DQLGLNFC-EESDSERIMMLCNRLKREK-KILVILDDIWTSLD--LERTGIPFG-DVHRGCKILVTSRRR--DVLVS--- 282 (1497)
Q Consensus 213 ~~l~~~~~-~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~ilvTTR~~--~v~~~--- 282 (1497)
..+-.... .....+....+..+..+.+ -+++|+|+++.... -..+...|. +.-.++|+|+.--.. +..++
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 77722111 1122344555666666555 78999999876621 111111121 122455555432111 11111
Q ss_pred -----cCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHh----CCChHHHHHHHH
Q 000447 283 -----EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANEC----GGLPIAILTVAR 340 (1497)
Q Consensus 283 -----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c----~glPLai~~~~~ 340 (1497)
.......+..+|.+.++-.++|..++.............+.+|+|+ |.+--|+.+.-+
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 1123457899999999999999999854333222222333444444 444445444433
No 105
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00026 Score=89.29 Aligned_cols=181 Identities=12% Similarity=0.133 Sum_probs=110.7
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhc---------------------cCCcceE
Q 000447 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKE---------------------GRIFDEV 193 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~ 193 (1497)
.....++|.+...+.|..++..+++. .+.++|+.|+||||+|+.++...-- ..+|+ +
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-I 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-e
Confidence 34567889999999999999866654 5889999999999999999887531 11233 1
Q ss_pred EEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEE
Q 000447 194 VFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKIL 271 (1497)
Q Consensus 194 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il 271 (1497)
..++......+.++. ++++++... - ..+++-++|+|++... ..++.+...+.....++.+|
T Consensus 93 ~~ld~~~~~~vd~Ir-~li~~~~~~---------------P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 93 HELDAASNNSVDDIR-NLIEQVRIP---------------P-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EEecccccCCHHHHH-HHHHHHhhC---------------c-ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 222222222222222 121221110 0 0146668899998765 34555555554444556655
Q ss_pred E-EeCchhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 272 V-TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 272 v-TTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
+ ||+...+..........+++.++++++....+.+.+....... ..+.+..|++.++|-.--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 5 5454554442234456899999999999999988764222111 1345778999999866433
No 106
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.89 E-value=0.00014 Score=81.10 Aligned_cols=163 Identities=15% Similarity=0.099 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChH
Q 000447 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDS 225 (1497)
Q Consensus 146 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (1497)
..+..+.++......+.+.|+|+.|+|||+||+.+++..... -..+.++++.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------
Confidence 344555555444455689999999999999999999876532 23455666532100
Q ss_pred HHHHHHHHHHhcCCeEEEEEcCCCCh---hhhhhc-cCCCCC-CCCC-eEEEEEeCchhhh---------hhcCcccceE
Q 000447 226 ERIMMLCNRLKREKKILVILDDIWTS---LDLERT-GIPFGD-VHRG-CKILVTSRRRDVL---------VSEMHCQNNY 290 (1497)
Q Consensus 226 ~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~l-~~~l~~-~~~g-s~ilvTTR~~~v~---------~~~~~~~~~~ 290 (1497)
....+.+.+. +--+|++||+... ..|+.. ...+.. ...| .++|+||+...-. . .+....++
T Consensus 87 -~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S-Rl~~g~~~ 162 (235)
T PRK08084 87 -FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS-RLDWGQIY 162 (235)
T ss_pred -hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH-HHhCCcee
Confidence 0011122221 2247899999654 344322 111211 1123 4699999855221 1 24445789
Q ss_pred EecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 291 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
+++++++++-.+++++++.... -.-.+++..-|++.+.|-.-++..
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 9999999999999988664221 112245677888888876554443
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.0002 Score=89.50 Aligned_cols=198 Identities=11% Similarity=0.124 Sum_probs=114.4
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcc--eEEEEEecCCcCHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFD--EVVFAEVSQTPDLKRIRREI 211 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i 211 (1497)
+....+++|++..++.|..++..+++. .+.++|+.|+||||+|+.+++..--..... ...+ ..+.....-+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHH
Confidence 445678899999999999998866544 789999999999999999998763211110 0000 001111111222
Q ss_pred HHHhCCCC-----CCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEe-Cchhh
Q 000447 212 ADQLGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDV 279 (1497)
Q Consensus 212 ~~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v 279 (1497)
...-..+. ......+.+..+.+.+. .+++-++|+|++... ...+.+...+......+++|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 22111100 00111223333333332 145668999998665 33455554444434456665544 44444
Q ss_pred hhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 280 LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
..........+++..++.++....+.+.+......- ..+....|++.++|-+.-+..
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 432233456899999999999999988774221111 134577889999998865443
No 108
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00018 Score=90.05 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=112.1
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE-ecCCcCHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE-VSQTPDLKRIRREIA 212 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~ 212 (1497)
+....+++|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+++..--....+...|.. +...+.....-+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 33466788999999999988876665 4588999999999999999998764222111111211 111112222222221
Q ss_pred HHhCCCC---C--CCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE-EeCchhhh
Q 000447 213 DQLGLNF---C--EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVL 280 (1497)
Q Consensus 213 ~~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~ 280 (1497)
..-..+. + .....+.+..+.+.+. .+++-++|+||++.. ...+.+...+......+.+|+ |++...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 1111110 0 1111233334444332 246668999998765 234555554444334555554 44444443
Q ss_pred hhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH
Q 000447 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
.........+++.+++.++....+.+.+...... -..+.++.|++.++|-.-
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHH
Confidence 3223345689999999999888888766321111 113457789999999554
No 109
>PRK09087 hypothetical protein; Validated
Probab=97.88 E-value=0.00014 Score=80.01 Aligned_cols=141 Identities=16% Similarity=0.069 Sum_probs=85.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
..+.+.|+|+.|+|||+|++.+++... ..+++.. .+..++.. .+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~--------------------~~~-- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN--------------------AAA-- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH--------------------hhh--
Confidence 346799999999999999999887642 1233321 11111111 111
Q ss_pred CeEEEEEcCCCChh-hhhhccCCCCC-CCCCeEEEEEeCch---------hhhhhcCcccceEEecCCCHHHHHHHHHHH
Q 000447 239 KKILVILDDIWTSL-DLERTGIPFGD-VHRGCKILVTSRRR---------DVLVSEMHCQNNYCVSVLNKEEAWSLFSKV 307 (1497)
Q Consensus 239 k~~LlVlDdv~~~~-~~~~l~~~l~~-~~~gs~ilvTTR~~---------~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 307 (1497)
.-+|++||+.... +-+.+...+.. ...|..||+|++.. +... .+.....++++++++++-.++++++
T Consensus 88 -~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 88 -EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHHHHHHHHH
Confidence 1278889995431 11112111111 23467799988742 2222 2455678999999999999999998
Q ss_pred hCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 308 VGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
+....- .--+++..-|++.+.|-.-++..
T Consensus 166 ~~~~~~-~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQL-YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCC-CCCHHHHHHHHHHhhhhHHHHHH
Confidence 853211 12245677888888877666554
No 110
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=9.7e-07 Score=94.36 Aligned_cols=184 Identities=21% Similarity=0.170 Sum_probs=95.3
Q ss_pred cceeeeecCcccccccccCCCCcccccccEEEEecCCCCcccHHHHhhcCCccEEEEE-ccceEEeecchhhhhhccccc
Q 000447 1073 HLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELR-WSSYKQIFSYKEAEKHAGKLT 1151 (1497)
Q Consensus 1073 ~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~sL~~L~I~-c~~l~~~~~~~~~~~~~~~l~ 1151 (1497)
.|+.|+++...++.-.... -...|.+|+.|.+.+..++.-....+..-.+|+.|+|+ |+++++.
T Consensus 186 Rlq~lDLS~s~it~stl~~-iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-------------- 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHG-ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-------------- 250 (419)
T ss_pred hhHHhhcchhheeHHHHHH-HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh--------------
Confidence 4777777775554322111 01225556666666655444333344444455555555 5554432
Q ss_pred cccEEEeCCCCCCchhhccCCcchhhccccceeEeeccCCccccCC--CCcccCcccEEEEecCCC-Cccccchhhhhcc
Q 000447 1152 HIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVP--SSPSFRNLITLEVWYCKG-LKNLVTSSTAKSL 1228 (1497)
Q Consensus 1152 ~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~~l~sL~~L~I~~C~~-L~~l~~~~~~~~l 1228 (1497)
.. .-.+.+|++|..|++++|..-+.... ...--++|+.|++++|.+ +..-....+.+.+
T Consensus 251 ----------------~~--~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 251 ----------------AL--QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred ----------------HH--HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 10 11234455566666666543321100 011224567777777642 2222224455677
Q ss_pred ccccEEEEccCccchhhhccCCCccccccccccccccccccccccceecCC-cccccCCCccEEEEccCC
Q 000447 1229 VQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSG-NYTFKFPCLEDLFVIECP 1297 (1497)
Q Consensus 1229 ~~L~~L~I~~C~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~~~-~~~~~~~sL~~L~I~~Cp 1297 (1497)
++|.+|++++|..++.-+. .+...|+.|++|.++.|..+- |.. -.....|+|.+|+|.+|-
T Consensus 313 p~l~~LDLSD~v~l~~~~~------~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCF------QEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CceeeeccccccccCchHH------HHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 7777888887776654221 233457778888888876541 110 001256899999999884
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00036 Score=85.32 Aligned_cols=185 Identities=12% Similarity=0.103 Sum_probs=109.1
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCC------------------cc-eEEE
Q 000447 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI------------------FD-EVVF 195 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~-~~~w 195 (1497)
.....++|.+...+.+..++...+.. ++.++|+.|+||||+|+.+++..--... +. -++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34567889998889999988866655 6689999999999999999887521110 00 1122
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEE
Q 000447 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT 273 (1497)
Q Consensus 196 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT 273 (1497)
++......+.++.. ++...... -..+++-++|+|++... +..+.+...+......+++|++
T Consensus 91 ldaas~~gId~IRe-lie~~~~~----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 91 MDAASNRGIDDIRE-LIEQTKYK----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred eccccccCHHHHHH-HHHHHhhC----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 22111111222211 11111000 00146678999998765 3344444444333455666666
Q ss_pred eCch-hhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 274 SRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 274 TR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
|.+. .+..........+++.+++.++....+.+.+......- ..+.++.|++.++|-+.-+...
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 6553 22221123356889999999999999887764222111 1356778999999988544433
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.83 E-value=0.00012 Score=79.81 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=116.1
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEE-EEecCCcCHHHHHHHH--
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF-AEVSQTPDLKRIRREI-- 211 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i-- 211 (1497)
+.....+.|.+..+.-+...+.....+....+|++|.|||+-|..++...--.+.|.+.+- .++|....+.-+-.++
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 4556778899999999998888877889999999999999999999988755566655542 3444333222111111
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHh-cCCe-EEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCch-hhhhhcCcc
Q 000447 212 ADQLGLNFCEESDSERIMMLCNRLK-REKK-ILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHC 286 (1497)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~ 286 (1497)
..++..... .... .-++ -.+|||+++.. +.|.++..........++.+..+-.- .+.......
T Consensus 112 fakl~~~~~------------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 112 FAKLTVLLK------------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred HHHHhhccc------------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 000100000 0000 0234 47889999876 67888777666655666655444333 222212234
Q ss_pred cceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh
Q 000447 287 QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 287 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1497)
...++.++|.+++...-++..+..+...-+ .+..+.|++.++|--
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 557899999999999999888853322222 345678999998843
No 113
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00044 Score=86.86 Aligned_cols=179 Identities=12% Similarity=0.124 Sum_probs=107.7
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCC-cc---------------eEEEEE
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-FD---------------EVVFAE 197 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---------------~~~wv~ 197 (1497)
+.....++|.+..++.+..++..+++ +.+.++|+.|+||||+|+.+++..--... .. -++++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 33456788999999999999886554 46789999999999999999976531110 00 001111
Q ss_pred ecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeE-E
Q 000447 198 VSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK-I 270 (1497)
Q Consensus 198 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-i 270 (1497)
.... ...+.+..+.+.+. .+++-++|+|++... ..+..+...+........ |
T Consensus 94 aasn---------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 94 AASN---------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred cccc---------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 1000 11222333333332 256679999998655 345555444433333444 4
Q ss_pred EEEeCchhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 271 LVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 271 lvTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
++||+...+..........+++.+++.++..+.+...+....... ..+.++.|++.++|-+--+
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 455555554432233456899999999999988887653211111 1345778999998876433
No 114
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.81 E-value=6.6e-05 Score=86.93 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=64.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC--cCHHHHHHHHHHHhCCCCCCCChHH---HHHH---
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLNFCEESDSE---RIMM--- 230 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~--- 230 (1497)
.-..++|+|++|+|||||++.+++.... ++|+..+||.+.++ .++.++++.+...+-...-+.+... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3457999999999999999999998864 48999999999866 7899999998543322211111111 1111
Q ss_pred -HHHHHhcCCeEEEEEcCCCCh
Q 000447 231 -LCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 231 -l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
......++++++|++|++..-
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 122223589999999999554
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00043 Score=83.28 Aligned_cols=180 Identities=12% Similarity=0.127 Sum_probs=103.4
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhcc------CCcceE-EEEEecCCcCHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG------RIFDEV-VFAEVSQTPDLKRI 207 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~-~wv~vs~~~~~~~~ 207 (1497)
.....++|.+..++.+.+++..... +.+.++|++|+||||+|+.+++..... ..|... +-++.....++.+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 92 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD- 92 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-
Confidence 3456778999999999999886554 588999999999999999998875421 112111 1111111111111
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEe-CchhhhhhcC
Q 000447 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLVSEM 284 (1497)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v~~~~~ 284 (1497)
.+++.+.+... .. .+++-++|+|++... ..++.+...+......+.+|++| +...+.....
T Consensus 93 i~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 93 IRNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 11222211100 01 145668999998654 23554433333333345555555 3333332112
Q ss_pred cccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH
Q 000447 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 285 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
.....+++.++++++....+...+...... -..+.+..|++.++|-+-
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALR 204 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHH
Confidence 334578999999999998888766321111 113567788888888654
No 116
>PF14516 AAA_35: AAA-like domain
Probab=97.78 E-value=0.0012 Score=77.53 Aligned_cols=201 Identities=17% Similarity=0.146 Sum_probs=118.5
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-----cCHHHHHHHH
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-----PDLKRIRREI 211 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i 211 (1497)
+..-++.|...-+++.+.+.+. -..+.|.|+-.+|||+|..++.+..+.. .+ .++++++..- .+..+.++.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 3445678886667777777653 3589999999999999999999888643 44 3456777542 2455555544
Q ss_pred ----HHHhCCCCCC--------CChHHHHHHHHHHHhc--CCeEEEEEcCCCChhh--------------hhhccCCCCC
Q 000447 212 ----ADQLGLNFCE--------ESDSERIMMLCNRLKR--EKKILVILDDIWTSLD--------------LERTGIPFGD 263 (1497)
Q Consensus 212 ----~~~l~~~~~~--------~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~--------------~~~l~~~l~~ 263 (1497)
.++++....- .+.......+.+.+.. +++.+|++|+|+..-. |..-....+.
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4444443210 0111222222333322 6899999999976521 2111010000
Q ss_pred CCCCeEEEEE-eCchhhhh---hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000447 264 VHRGCKILVT-SRRRDVLV---SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1497)
Q Consensus 264 ~~~gs~ilvT-TR~~~v~~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 339 (1497)
-.+=+-|++. |+.....+ ........+++++++.+|...|..++-.. .. ....++|....||+|.-+..++
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~----~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FS----QEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CC----HHHHHHHHHHHCCCHHHHHHHH
Confidence 0000112222 11111111 12333457899999999999998876322 11 2227899999999999999999
Q ss_pred HHhcCC
Q 000447 340 RTLRNK 345 (1497)
Q Consensus 340 ~~L~~~ 345 (1497)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999764
No 117
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00049 Score=83.93 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=105.0
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccC---------------------CcceE
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR---------------------IFDEV 193 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~ 193 (1497)
.....++|.+..++.+..++..++. +.+.++|+.|+||||+|+.+++..--.. +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 3456788999999999999886665 5688999999999999999998763211 111 1
Q ss_pred EEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEE
Q 000447 194 VFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKIL 271 (1497)
Q Consensus 194 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il 271 (1497)
+++.-.....++++ +++.+.+. ..-..+++-++|+|+++.. ...+.+...+.....+..+|
T Consensus 93 ~~i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 93 LEIDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred EEeeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 11111111111111 11211111 0001256778999998654 23344444444333455666
Q ss_pred EEeC-chhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH
Q 000447 272 VTSR-RRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 272 vTTR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
++|. ...+..........+++.++++++....+.+.+...... ...+.+..|++.++|-+-
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLR 217 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 6553 333332112345678999999999998888776321111 113457789999998654
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00053 Score=85.29 Aligned_cols=200 Identities=14% Similarity=0.082 Sum_probs=112.2
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+....+++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++..--....+ + ..++....-+.|..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~ 81 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAP 81 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhc
Confidence 334567889999999999998876655 578999999999999999998753111110 0 01111111111111
Q ss_pred HhC-------CCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE-EeCchhh
Q 000447 214 QLG-------LNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDV 279 (1497)
Q Consensus 214 ~l~-------~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v 279 (1497)
.-+ .+.......+.+..+.+... .+++-++|+|++... ...+.+...+........+|+ ||....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 000 00000011222222322221 246668999998755 344555444443334555554 5554444
Q ss_pred hhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH-HHHHHHHHh
Q 000447 280 LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVARTL 342 (1497)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~L 342 (1497)
..........+++.+++.++..+.+.+.+......- ..+....|++..+|-+- |+..+-.++
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 432233456899999999999988887764221111 13456778899999774 444444433
No 119
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.74 E-value=0.00043 Score=77.14 Aligned_cols=189 Identities=16% Similarity=0.164 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHc---CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc----eEEEEEecCCcCHHHHHHHHHHHhCC
Q 000447 145 ESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD----EVVFAEVSQTPDLKRIRREIADQLGL 217 (1497)
Q Consensus 145 ~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1497)
.+.++++.+.+. ..+.+-+.|||..|+|||++++++...+-....-+ .++.|.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 345666666665 34567899999999999999999998764322112 46778888999999999999999998
Q ss_pred CCCCCChHHH-HHHHHHHHhcCCeEEEEEcCCCChh--------hhhhccCCCCCCCCCeEEEEEeCchhhhhh----cC
Q 000447 218 NFCEESDSER-IMMLCNRLKREKKILVILDDIWTSL--------DLERTGIPFGDVHRGCKILVTSRRRDVLVS----EM 284 (1497)
Q Consensus 218 ~~~~~~~~~~-~~~l~~~l~~~k~~LlVlDdv~~~~--------~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~----~~ 284 (1497)
.......... .....+.+..-+--+||+|++.+.- +.-.....+.+.-.=+-|.|-|+...-+-. .-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 8654433333 3333444544577799999996641 111111122222233446666654422221 01
Q ss_pred cccceEEecCCCHH-HHHHHHHHHhC----CCCCCchHHHHHHHHHHHhCCChH
Q 000447 285 HCQNNYCVSVLNKE-EAWSLFSKVVG----NCVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 285 ~~~~~~~l~~L~~~-e~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
.....+.++....+ |...|+..... .....-...++++.|...++|+.=
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 12345666665544 44444433321 112223346789999999999863
No 120
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00029 Score=91.92 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=93.1
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC---c-ceEEEEEecCCcCHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI---F-DEVVFAEVSQTPDLKRIRREI 211 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~i 211 (1497)
.....++||+++++++++.|......-+.++|++|+|||++|+.++++...... + +..+|.. +...+.
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~--- 250 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL--- 250 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh---
Confidence 345578999999999999988655556789999999999999999998743221 1 3344421 111111
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh----------hhhhccCCCCCCCCCe-EEEEEeCchhh-
Q 000447 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------DLERTGIPFGDVHRGC-KILVTSRRRDV- 279 (1497)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs-~ilvTTR~~~v- 279 (1497)
. ...........+..+.+.+.+.++.+|++|++.... +...+..+. -.+|- ++|-+|...+.
T Consensus 251 -a---~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~--l~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 251 -A---GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPA--LSSGKLRCIGSTTYEEYK 324 (731)
T ss_pred -h---hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHH--HhCCCeEEEEecCHHHHH
Confidence 0 000001223445555666554578999999986331 111222221 12332 34444443211
Q ss_pred ---h--hhcCcccceEEecCCCHHHHHHHHHHHh
Q 000447 280 ---L--VSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 280 ---~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
. .........+.+++++.++..++++...
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 1011234578999999999999998654
No 121
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=3.9e-06 Score=89.90 Aligned_cols=57 Identities=28% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCcEEEeecCCCc--ccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCC
Q 000447 581 NLEILSLCCSDIE--QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1497)
Q Consensus 581 ~L~~L~Ls~~~l~--~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~ 638 (1497)
.||+|||+.+.|+ .+-.-+..+.+|+.|.+.|+..-..+... +.+=.+|+.|+++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccc
Confidence 4666777766655 33333455566666666665522222222 445555555555544
No 122
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.73 E-value=4.9e-07 Score=107.24 Aligned_cols=177 Identities=22% Similarity=0.206 Sum_probs=124.4
Q ss_pred cccceEEEcccCCCCCCCCccC-CCCccEEEcCCCC---------CCCCCCchhhcCCCCccEEEecCccCccCCccCCC
Q 000447 487 LKNCIAIFLHDINTGELPEGLE-YPHLTSLCMNPKD---------PFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH 556 (1497)
Q Consensus 487 ~~~~~~lsl~~~~~~~lp~~~~-~~~Lr~L~L~~~~---------~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~ 556 (1497)
.+.+|++-+.++++..+..... -.+|+.|..++.- ..+.+..+. --..|.+.++++|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 4567788887777665322221 2344444433210 001111110 124577788888888888888888
Q ss_pred CCCCCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccchh-hcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEe
Q 000447 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPRE-IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL 635 (1497)
Q Consensus 557 L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP~~-i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l 635 (1497)
++.|+.|+|++|++.....+..|.+|.+|||++|.+..+|.- +... +|+.|++++|. ++.+-. +.+|++|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HHhhhhhhccch
Confidence 899999999999999888999999999999999999988863 3333 49999999886 777754 889999999999
Q ss_pred cCCcccccccccccccCccChhhcCCCCCCcEEEeeccCCCCCC
Q 000447 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1497)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 679 (1497)
+.|-+.+ ...+..|..|..|+.|.+.+|.+...|
T Consensus 262 syNll~~----------hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 262 SYNLLSE----------HSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hHhhhhc----------chhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9987762 233456666778888999888876554
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.0007 Score=85.76 Aligned_cols=195 Identities=10% Similarity=0.064 Sum_probs=112.9
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
.....++|.+..++.|..++...++ +.+.++|+.|+||||+|+.+++......... ....++.....+.|...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcC
Confidence 3456788999999999888876554 4678999999999999999998763111100 00111222333333322
Q ss_pred hCCCC---C--CCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCc-hhhhhh
Q 000447 215 LGLNF---C--EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVS 282 (1497)
Q Consensus 215 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~ 282 (1497)
...+. . .....+.+..+.+.+. .+++-++|+|++... +..+.+...+......+.+|++|.+ ..+...
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 22110 0 0111222333333322 146778999998654 3455554444433345666665543 333321
Q ss_pred cCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
.......+.+..++.++....+.+.+...... -..+.+..|++.++|-+..+..
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 12334578899999999998888877432111 1134677899999998865443
No 124
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.72 E-value=0.00031 Score=84.35 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=101.5
Q ss_pred CCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC
Q 000447 135 NEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 201 (1497)
......+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+++++... .. |+.++.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~- 198 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG- 198 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh-
Confidence 3445678899999888887653 1 2345689999999999999999998764 22 233221
Q ss_pred cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh------------h-hhhccC---CCC--C
Q 000447 202 PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D-LERTGI---PFG--D 263 (1497)
Q Consensus 202 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~-~~~l~~---~l~--~ 263 (1497)
.++. .... . .....+..+.+......+.+|++||++... . ...+.. .+. .
T Consensus 199 ---~~l~----~~~~----g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 ---SELV----QKFI----G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred ---HHHh----Hhhc----c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 1110 0 112223334444444577899999987531 0 111111 111 1
Q ss_pred CCCCeEEEEEeCchhhhhhcC----cccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh
Q 000447 264 VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 264 ~~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1497)
...+.+||.||......+.++ .-...+.++..+.++-.++|+.+........+. ....+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 123566777777654433311 124578999999999999999887532221111 1345666666653
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0011 Score=81.42 Aligned_cols=180 Identities=12% Similarity=0.088 Sum_probs=105.6
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccC-------------------CcceEEE
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVF 195 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 195 (1497)
.....++|.+..++.+..++...++ +.+.++|+.|+||||+|+.++...--.. .|..+++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 3455788999999999999886554 4667899999999999999998653100 0111222
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeE
Q 000447 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK 269 (1497)
Q Consensus 196 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 269 (1497)
++.+.... .+.+..+.+... .+++-++|+|+++.. ...+.+...+........
T Consensus 93 idaas~~g---------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 93 IDAASNRG---------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EeCccCCC---------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 22211111 111222222221 256779999998755 334444444433333445
Q ss_pred EEEEe-CchhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 270 ILVTS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 270 ilvTT-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
+|++| +...+..........+++.+++.++....+.+++...... ...+.+..|++.++|.+..+..
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 55544 4333332112234578999999999998888876321111 1134567788899987654443
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.70 E-value=0.00027 Score=83.24 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=87.2
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+.....++|.++..+.+..++...+. .++.++|++|+||||+|+.+++... . .+..++.+. .... ..+..+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~---~~~~i~~~~-~~~~-~i~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--A---EVLFVNGSD-CRID-FVRNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--c---cceEeccCc-ccHH-HHHHHHH
Confidence 34566788999999999999886554 5777799999999999999998752 1 123344433 2211 1111111
Q ss_pred HhCCCCCCCChHHHHHHHHHHH-hcCCeEEEEEcCCCCh---hhhhhccCCCCCCCCCeEEEEEeCchhhhhh-cCcccc
Q 000447 214 QLGLNFCEESDSERIMMLCNRL-KREKKILVILDDIWTS---LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-EMHCQN 288 (1497)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-~~~~~~ 288 (1497)
.. .... ..+.+-+||+||++.. +..+.+...+.....++++|+||........ ......
T Consensus 90 ~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11 0000 0134568899999755 1122232223333457788888865432211 112334
Q ss_pred eEEecCCCHHHHHHHHHH
Q 000447 289 NYCVSVLNKEEAWSLFSK 306 (1497)
Q Consensus 289 ~~~l~~L~~~e~~~Lf~~ 306 (1497)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777788887766654
No 127
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=3.4e-06 Score=100.33 Aligned_cols=102 Identities=24% Similarity=0.285 Sum_probs=78.1
Q ss_pred CCCEEeccCCCCCCC-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecC
Q 000447 559 NLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGN 637 (1497)
Q Consensus 559 ~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~ 637 (1497)
.|.+-+.++|.+..+ .++.-++.|+.|||++|++...- .+..|.+|+||||++|. +..+|.-....++ |+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecc
Confidence 355556666666666 67778889999999999888765 78889999999999987 8888764333444 89999988
Q ss_pred CcccccccccccccCccChhhcCCCCCCcEEEeeccCCC
Q 000447 638 TSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAV 676 (1497)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 676 (1497)
|.++ .+.++.+|.+|+.|+++.|-+.
T Consensus 242 N~l~-------------tL~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 242 NALT-------------TLRGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred cHHH-------------hhhhHHhhhhhhccchhHhhhh
Confidence 8765 4567888888888988876543
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00099 Score=84.08 Aligned_cols=197 Identities=14% Similarity=0.099 Sum_probs=113.0
Q ss_pred CCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
.....++|.+..++.|..++...+. +.+.++|+.|+||||+|+.+++..--.. .+... ...+...+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCC----CCCCcccHHHHHHhcC
Confidence 3456788999999999998886554 5788999999999999999998864211 11000 0111222233333222
Q ss_pred hCCCC-----CCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE-EeCchhhhhh
Q 000447 215 LGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVS 282 (1497)
Q Consensus 215 l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~~ 282 (1497)
...+. ......+.+..+.+.+. .+++-++|+|+++.. +.++.+...+......+.+|+ |+....+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 21110 01112233333333332 245678999999765 345555554443334455554 4443333332
Q ss_pred cCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
.......+++..++.++....+.+.+......- ..+.+..|++.++|-+..+...
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 233456788889999998888887664321111 1245778899999987554433
No 129
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=5.5e-06 Score=101.15 Aligned_cols=105 Identities=30% Similarity=0.341 Sum_probs=46.7
Q ss_pred cCCCCccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccchhhcCCCccCEEecc
Q 000447 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611 (1497)
Q Consensus 532 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls 611 (1497)
..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++++|.|..++ .+..+.+|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 33444444444444444443334444444444444444444444444444444444444444433 23334444444444
Q ss_pred CCCCCCCcCh-hhhcCCCCCCEEEecCCc
Q 000447 612 NCSKLKVIPP-NVISSLSQLEELYLGNTS 639 (1497)
Q Consensus 612 ~~~~l~~lp~-~~l~~L~~L~~L~l~~~~ 639 (1497)
+|. +..+.. . +..+.+|+.+++.+|.
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 444 333332 1 1334444444444443
No 130
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.64 E-value=6.6e-06 Score=100.44 Aligned_cols=100 Identities=29% Similarity=0.364 Sum_probs=45.0
Q ss_pred ccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCCcc-cCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCC
Q 000447 537 LRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAI-IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSK 615 (1497)
Q Consensus 537 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~-i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~ 615 (1497)
+..+.+..|.+...-..++.+.+|.+|++.+|.|..+.. +..+.+|++|++++|.|+.+. .+..+..|+.|++++|.
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~- 151 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL- 151 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-
Confidence 333334444444333334444444555555544444433 444455555555544444443 34444444444544444
Q ss_pred CCCcChhhhcCCCCCCEEEecCCcc
Q 000447 616 LKVIPPNVISSLSQLEELYLGNTSV 640 (1497)
Q Consensus 616 l~~lp~~~l~~L~~L~~L~l~~~~~ 640 (1497)
+..++. +..+++|+.+++++|.+
T Consensus 152 i~~~~~--~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 152 ISDISG--LESLKSLKLLDLSYNRI 174 (414)
T ss_pred chhccC--CccchhhhcccCCcchh
Confidence 444333 33444444444444443
No 131
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.64 E-value=0.00028 Score=77.43 Aligned_cols=159 Identities=21% Similarity=0.196 Sum_probs=92.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1497)
...+.|+|..|+|||.|.+++++.......=..+++++ .+++...+...+... ....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh--c
Confidence 34688999999999999999999876332223455664 456666666655431 1233444453 5
Q ss_pred eEEEEEcCCCChh---hhhh-ccCCCCC-CCCCeEEEEEeCchhhh-hh-------cCcccceEEecCCCHHHHHHHHHH
Q 000447 240 KILVILDDIWTSL---DLER-TGIPFGD-VHRGCKILVTSRRRDVL-VS-------EMHCQNNYCVSVLNKEEAWSLFSK 306 (1497)
Q Consensus 240 ~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~ilvTTR~~~v~-~~-------~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1497)
-=+|++||++... .|.. +..-+.. ...|-+||+|++..... .. .+...-.+++++.++++-.+++++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 5688999997652 2322 1111111 12466899999654221 10 244456799999999999999999
Q ss_pred HhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 307 VVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
++...... -.++++.-|++.+.+-.-.+
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHH
Confidence 88422111 22456667777776554433
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.63 E-value=0.00017 Score=85.14 Aligned_cols=108 Identities=22% Similarity=0.294 Sum_probs=73.9
Q ss_pred ccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000447 139 EFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1497)
..+++.+..++.++..|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++..+..+++..+... +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 34667788889999888743 468889999999999999999988655678899999999998877776533111 111
Q ss_pred CCCCChHHHHHHHHHHHhc--CCeEEEEEcCCCCh
Q 000447 219 FCEESDSERIMMLCNRLKR--EKKILVILDDIWTS 251 (1497)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~ 251 (1497)
.. -......++.....+ +++++||+|++...
T Consensus 252 y~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FR--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eE--ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 001112222223322 47899999998665
No 133
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.63 E-value=0.00041 Score=91.01 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=92.8
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEEE-EEecCCcCHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVF-AEVSQTPDLKRIRR 209 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~~ 209 (1497)
+.....++||+.++.++++.|......-+.++|++|+||||+|+.++++...... .+..+| ++++.-
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l-------- 254 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL-------- 254 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh--------
Confidence 3445678999999999999988666666789999999999999999998642211 123333 222210
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhc-CCeEEEEEcCCCChh---------hhhhccCCCCCCCCC-eEEEEEeCchh
Q 000447 210 EIADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRD 278 (1497)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~ilvTTR~~~ 278 (1497)
.............+..+.+.+.+ +++.+|++|++.... +...+..|. -.+| -++|-||...+
T Consensus 255 -----~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 255 -----QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAE 327 (852)
T ss_pred -----hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHH
Confidence 00000001112333344444432 478999999985541 111122222 2234 34555555422
Q ss_pred hhh------hcCcccceEEecCCCHHHHHHHHHHHh
Q 000447 279 VLV------SEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 279 v~~------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
... ........+.+++++.++..++++...
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 111 012234689999999999999975544
No 134
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.62 E-value=0.0005 Score=76.59 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=92.1
Q ss_pred HHHHHHHHHc-CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChH
Q 000447 147 ILNDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDS 225 (1497)
Q Consensus 147 ~~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (1497)
.+..+.++.. ....+.+.|+|..|+|||+||+.+++....+ .. .+.+++..... .. +
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~~------~~----~---------- 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GR-NARYLDAASPL------LA----F---------- 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHhH------HH----H----------
Confidence 3444444443 2344678999999999999999999876422 22 33444432211 00 0
Q ss_pred HHHHHHHHHHhcCCeEEEEEcCCCChhhh--hhccCCCCC-CCCCe-EEEEEeCchhhhhh-------cCcccceEEecC
Q 000447 226 ERIMMLCNRLKREKKILVILDDIWTSLDL--ERTGIPFGD-VHRGC-KILVTSRRRDVLVS-------EMHCQNNYCVSV 294 (1497)
Q Consensus 226 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~ilvTTR~~~v~~~-------~~~~~~~~~l~~ 294 (1497)
... .+.-+||+||+.....+ +.+...+.. ...|. .||+|++....... .+.....+++++
T Consensus 86 -------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 -------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred -------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 011 23447889999654322 122222211 12333 46677665432210 122246889999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 000447 295 LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1497)
Q Consensus 295 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 342 (1497)
+++++-..++.+.+..... .--+++.+.+++...|.+..+..+-..+
T Consensus 157 l~~~~~~~~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 157 LSDADKIAALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9998877777765422111 1124567788888999988877665544
No 135
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.001 Score=81.22 Aligned_cols=165 Identities=16% Similarity=0.159 Sum_probs=102.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
..+.|+|..|+|||+|++++++.......-..+++++ ..++...+...++... ...+.+.+.+. +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc--cC
Confidence 4689999999999999999999765322222344443 3466677766664310 22333444442 44
Q ss_pred EEEEEcCCCChh---hh-hhccCCCCC-CCCCeEEEEEeCchh---------hhhhcCcccceEEecCCCHHHHHHHHHH
Q 000447 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1497)
Q Consensus 241 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1497)
-+||+||+.... .+ +.+...+.. ...|..||+|+.... +.. .+...-...+++++.++-.+++++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S-R~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT-RFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH-HHhCCceeccCCcCHHHHHHHHHH
Confidence 589999996542 22 222222211 123456888876442 111 244455788999999999999999
Q ss_pred HhCCCCC-CchHHHHHHHHHHHhCCChHHHHHHHH
Q 000447 307 VVGNCVE-DPDLQTVAIQVANECGGLPIAILTVAR 340 (1497)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~i~~~c~glPLai~~~~~ 340 (1497)
++..... ..-.+++..-|++.++|.|-.+.-+..
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 8842211 123356788999999999977665443
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.0011 Score=82.54 Aligned_cols=194 Identities=9% Similarity=0.067 Sum_probs=109.8
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+.....++|.+..++.+..++...+. +.+.++|+.|+||||+|+.+++..--...... ..+.....-++|..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~ 84 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDN 84 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHc
Confidence 34566788999999999999886554 46889999999999999999987632111100 00000000111111
Q ss_pred HhCCC---CC--CCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeC-chhhhh
Q 000447 214 QLGLN---FC--EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSR-RRDVLV 281 (1497)
Q Consensus 214 ~l~~~---~~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR-~~~v~~ 281 (1497)
.-..+ .+ .....+.+..+.+.+. .+++-++|+|++... ..++.+...+......+.+|++|. ...+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 00000 00 0011122222222211 256678999998665 345666555554445666665554 333333
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
........+++.+++.++..+.+.+.+...... -..+.+..|++.++|-+-.+.
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 212335578999999999988888776321111 123457788999999775443
No 137
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.62 E-value=0.00037 Score=79.25 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=70.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
...-+.++|++|+||||+|+.+++.......-....++.++.. ++... . ..+. ......+.+. .
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~----~----~g~~-~~~~~~~~~~---a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE----Y----IGHT-AQKTREVIKK---A 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh----h----ccch-HHHHHHHHHh---c
Confidence 3457889999999999999999987532211111223333221 11111 0 0111 1112222222 2
Q ss_pred CeEEEEEcCCCCh----------hhhhhccCCCCCCCCCeEEEEEeCchhhhh------hcCcc-cceEEecCCCHHHHH
Q 000447 239 KKILVILDDIWTS----------LDLERTGIPFGDVHRGCKILVTSRRRDVLV------SEMHC-QNNYCVSVLNKEEAW 301 (1497)
Q Consensus 239 k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~------~~~~~-~~~~~l~~L~~~e~~ 301 (1497)
..-+|++|++... +..+.+...+........+++++....... ..... ...+++++++.+|-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 2358899999652 122333333333333345556654432210 00111 346889999999999
Q ss_pred HHHHHHhC
Q 000447 302 SLFSKVVG 309 (1497)
Q Consensus 302 ~Lf~~~~~ 309 (1497)
+++++.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99988774
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=5.2e-05 Score=58.99 Aligned_cols=38 Identities=37% Similarity=0.579 Sum_probs=18.6
Q ss_pred CccEEEecCccCccCCccCCCCCCCCEEeccCCCCCCC
Q 000447 536 KLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI 573 (1497)
Q Consensus 536 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l 573 (1497)
+|++|++++|.++.+|..+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555554455555555555555544433
No 139
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.61 E-value=0.0012 Score=80.56 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=92.7
Q ss_pred CCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccC---CcceEEEEEe
Q 000447 135 NEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGR---IFDEVVFAEV 198 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~v 198 (1497)
......+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++...... ......++++
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 3445667789888888887753 1 2345689999999999999999999874221 1123344544
Q ss_pred cCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHH----HHhcCCeEEEEEcCCCChh---------h-----hhhccCC
Q 000447 199 SQTPDLKRIRREIADQLGLNFCEESDSERIMMLCN----RLKREKKILVILDDIWTSL---------D-----LERTGIP 260 (1497)
Q Consensus 199 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~----~l~~~k~~LlVlDdv~~~~---------~-----~~~l~~~ 260 (1497)
.... ++. .. ..+ ....+..+.+ ....+++++|++|+++... + ...+...
T Consensus 258 ~~~e----Ll~----ky----vGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 258 KGPE----LLN----KY----VGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred cchh----hcc----cc----cch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 3311 110 00 000 1111222222 2223578999999997531 1 1122222
Q ss_pred CCC--CCCCeEEEEEeCchhhhhhcC----cccceEEecCCCHHHHHHHHHHHhCC
Q 000447 261 FGD--VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGN 310 (1497)
Q Consensus 261 l~~--~~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 310 (1497)
+.. ...+..||.||...+..+.++ .-...++++..+.++..++|+++...
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 221 113445566665554444322 12446899999999999999998753
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0015 Score=81.82 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=109.4
Q ss_pred CCCcccccchHHHHHHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+.....++|++...+.+..++...+ .+.+.++|+.|+||||+|+.+++..-....-+ ...++....-+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 3456678999999999999987544 45678899999999999999987653211100 011111112222211
Q ss_pred HhCCCC-----CCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE-EeCchhhhh
Q 000447 214 QLGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLV 281 (1497)
Q Consensus 214 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~ 281 (1497)
....+. ......+.+..+.+... .+++-++|+|++... ..+..+...+........+|+ ||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 111100 00011223333333322 256778899999755 345555444433333444444 544444433
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
........+++.+++.++....+.+.+......-+ .+.+..|++.++|-+..+
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 22334567889999999999888887632211111 345678888888876543
No 141
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.58 E-value=0.00054 Score=90.52 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=92.3
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEEEEEecCCcCHHHHHHHHHH
Q 000447 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
...++||++++++++++|......-+.++|++|+|||++|+.++.+...... -+..+|. + +...++
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----- 247 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----- 247 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh-----
Confidence 4568999999999999998655556679999999999999999988642211 1234552 1 111111
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh---------hhhhccCCCCCCCCCeEEEEEeCchhhhh---
Q 000447 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL---------DLERTGIPFGDVHRGCKILVTSRRRDVLV--- 281 (1497)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~ilvTTR~~~v~~--- 281 (1497)
.+........+.+..+.+.+...++.+|++|++.... +...+..+....+ .-++|.+|...+...
T Consensus 248 --ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 248 --AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHh
Confidence 1111111233445556666655678999999985331 1122222221111 134555555443211
Q ss_pred ---hcCcccceEEecCCCHHHHHHHHHHH
Q 000447 282 ---SEMHCQNNYCVSVLNKEEAWSLFSKV 307 (1497)
Q Consensus 282 ---~~~~~~~~~~l~~L~~~e~~~Lf~~~ 307 (1497)
........+.++..+.++...+++..
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 01223457888889999988887654
No 142
>PRK05642 DNA replication initiation factor; Validated
Probab=97.57 E-value=0.00096 Score=74.24 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=88.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
..+.|+|..|+|||.||+.+++....+ -..++|++... +... ...+.+.+. +-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~-~~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLE-QY- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhh-hC-
Confidence 578999999999999999999876532 23566776432 2111 012333333 12
Q ss_pred EEEEEcCCCCh---hhhhh-ccCCCCC-CCCCeEEEEEeCchhhhhh--------cCcccceEEecCCCHHHHHHHHHHH
Q 000447 241 ILVILDDIWTS---LDLER-TGIPFGD-VHRGCKILVTSRRRDVLVS--------EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1497)
Q Consensus 241 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ilvTTR~~~v~~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~ 307 (1497)
-+||+||+... ..|+. +..-+.. ...|.+||+|++...-.-. .+.....++++++++++-.++++++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 26889999643 34443 2222221 2346679998875432110 1233467889999999999999866
Q ss_pred hCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 308 VGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
+.... -.-.+++..-|++++.|-.-++..
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 63211 111245677788888776554443
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=9.2e-05 Score=57.61 Aligned_cols=39 Identities=41% Similarity=0.585 Sum_probs=22.2
Q ss_pred CCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcC
Q 000447 581 NLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIP 620 (1497)
Q Consensus 581 ~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp 620 (1497)
+|++|++++|+|+.+|..+++|++|++|++++|. +.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5566666666666666556666666666666654 44443
No 144
>CHL00181 cbbX CbbX; Provisional
Probab=97.52 E-value=0.0019 Score=73.87 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=73.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++. ....+. .. .....+.+.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~----~~~~g~----~~-~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLV----GQYIGH----TA-PKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHH----HHHhcc----ch-HHHHHHHHHc---cC
Confidence 3588999999999999999998754222212222454441 1222 212111 11 1112222222 33
Q ss_pred EEEEEcCCCCh-----------hhhhhccCCCCCCCCCeEEEEEeCchhhhhh-------cCcccceEEecCCCHHHHHH
Q 000447 241 ILVILDDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWS 302 (1497)
Q Consensus 241 ~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~ 302 (1497)
-+|++|++... +..+.+...+.....+.+||+++....+... .-.....+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 58999998642 1222233333334455677777754332110 01124478999999999999
Q ss_pred HHHHHhC
Q 000447 303 LFSKVVG 309 (1497)
Q Consensus 303 Lf~~~~~ 309 (1497)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888773
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.002 Score=74.60 Aligned_cols=195 Identities=12% Similarity=0.066 Sum_probs=113.0
Q ss_pred ccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccC-------------CcceEEEEEecCCcCH
Q 000447 139 EFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------IFDEVVFAEVSQTPDL 204 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------~F~~~~wv~vs~~~~~ 204 (1497)
..++|.+..++.+...+..+++ +...++|+.|+||+++|..+++..--.. ...-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4678999999999999887765 7999999999999999999998753211 1112234321100000
Q ss_pred HHHHHHHHHHhC--CCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCc
Q 000447 205 KRIRREIADQLG--LNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR 276 (1497)
Q Consensus 205 ~~~~~~i~~~l~--~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~ 276 (1497)
..+-.+-++..+ ......-..+.+..+.+.+. .+++-++|+|+++.. ....++...+....++.-|++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 000011111111 11111122334445555544 257778999998655 2344444434322233444555555
Q ss_pred hhhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 277 RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 277 ~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
..+..........+++.++++++..+.+.+......... ....++..++|-|..+..
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~----~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNI----NFPELLALAQGSPGAAIA 220 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchh----HHHHHHHHcCCCHHHHHH
Confidence 454443334567899999999999999988643211111 135788999999966554
No 146
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.52 E-value=0.0019 Score=74.01 Aligned_cols=132 Identities=10% Similarity=0.088 Sum_probs=72.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeE
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKI 241 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 241 (1497)
-+.++|++|+|||++|+.+++...........-|+.++. .++ ...+.+. +. .....+.+.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~----~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGH----TA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhccc----ch-HHHHHHHHHc---cCc
Confidence 588999999999999999888764322222223444442 122 2222111 11 1122222222 346
Q ss_pred EEEEcCCCCh-----------hhhhhccCCCCCCCCCeEEEEEeCchhhhhh-------cCcccceEEecCCCHHHHHHH
Q 000447 242 LVILDDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWSL 303 (1497)
Q Consensus 242 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~L 303 (1497)
+|++|++... +.++.+...+.....+.+||+++.....-.. .......+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899998632 1223333333334456677777654322110 001135789999999999999
Q ss_pred HHHHhC
Q 000447 304 FSKVVG 309 (1497)
Q Consensus 304 f~~~~~ 309 (1497)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988763
No 147
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.50 E-value=8.7e-06 Score=102.63 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=45.0
Q ss_pred cccccEEEEccCCCccccCCchhHhhccccceEEEeec-cccceeeccccCcccccceecCccceeeccCCCccccccCC
Q 000447 939 IQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHC-TVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPG 1017 (1497)
Q Consensus 939 l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C-~~L~~l~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~~~~~ 1017 (1497)
+++|+.|.+.+|..+....-...+..++.|++|++++| ......... .......+++|+.|++..|..+++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL----LLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH----hhhhhhhcCCcCccchhhhhccCchhHH
Confidence 45556666666665554222234556666666666653 211111000 0011223455666666666554443333
Q ss_pred cccccCCCcceEEeecCCce
Q 000447 1018 IHTLEWPLLKRLEVYGCNKV 1037 (1497)
Q Consensus 1018 ~~~~~~~sL~~L~i~~C~~L 1037 (1497)
.....|++|++|.+.+|..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~l 282 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNL 282 (482)
T ss_pred HHHhhCCCcceEccCCCCcc
Confidence 33334566666666666553
No 148
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.0093 Score=64.81 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=99.0
Q ss_pred CCCcccccchHHHHHHHHHHHc-----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1497)
+....+|+|.++.++++-=.+. +...--+.++|++|.||||||.-+++...+. + .+.+.+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~------k~tsGp~------ 87 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L------KITSGPA------ 87 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e------Eeccccc------
Confidence 4557789999988888766665 4556789999999999999999999988543 1 1111110
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh-hh--------hhccCCC-CCCCCCeE----------
Q 000447 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-DL--------ERTGIPF-GDVHRGCK---------- 269 (1497)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~~--------~~l~~~l-~~~~~gs~---------- 269 (1497)
-.....+..+...+ ...-++.+|++.... .. +++.... ...++++|
T Consensus 88 ------------leK~gDlaaiLt~L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 88 ------------LEKPGDLAAILTNL--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ------------ccChhhHHHHHhcC--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 00111112222222 233445556654331 01 1110000 01122222
Q ss_pred -EEEEeCchhhhhhc-CcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 270 -ILVTSRRRDVLVSE-MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 270 -ilvTTR~~~v~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
|=-|||.-.+.+.. ..-....+++-.+.+|-.+...+.+..-.. +-.++.+.+|+++..|-|--.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHH
Confidence 33588876554421 112346788899999999999888742111 112345889999999999543
No 149
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=6.2e-05 Score=95.59 Aligned_cols=82 Identities=28% Similarity=0.435 Sum_probs=40.3
Q ss_pred cCCCCccEEEecCccCc--cCCccCCCCCCCCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccc--hhhcCCCccCE
Q 000447 532 AGMPKLRVLVLTRMKLL--TLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLP--REIGELTQLKL 607 (1497)
Q Consensus 532 ~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP--~~i~~L~~L~~ 607 (1497)
..++.||.|.+.+-.+. ++-.-..++++|+.||+++++++.+..+++|+||++|.+.+=.+..-+ ..+-+|++|++
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 34555555555554332 222223345555555555555555555555555555555543333211 23445555555
Q ss_pred EeccCC
Q 000447 608 LDLSNC 613 (1497)
Q Consensus 608 L~Ls~~ 613 (1497)
||+|..
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 555543
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.47 E-value=0.0026 Score=77.51 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=92.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
..+.|+|+.|+|||+||+++++....+..=..+++++. .++..++...+... ....+.+.+. +.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 46899999999999999999998763311124556643 34444555544321 1223334443 23
Q ss_pred EEEEEcCCCChh---hh-hhccCCCCC-CCCCeEEEEEeCchh---------hhhhcCcccceEEecCCCHHHHHHHHHH
Q 000447 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1497)
Q Consensus 241 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1497)
-+||+||+.... .+ +.+...+.. ...|..+|+|+.... +.. .+.....+.+++.+.++-.+++++
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS-RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh-hccCCeEEEeCCCCHHHHHHHHHH
Confidence 488999997542 11 112111111 123556888876421 111 233345789999999999999999
Q ss_pred HhCCCCCCchHHHHHHHHHHHhCCChHH
Q 000447 307 VVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1497)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~c~glPLa 334 (1497)
++..... .-.+++...|++.+.|-.-.
T Consensus 280 ~~~~~~~-~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 280 KAEEEGL-ELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHcCC-CCCHHHHHHHHHhcCCCHHH
Confidence 8853221 11245677888888876653
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0012 Score=83.07 Aligned_cols=196 Identities=12% Similarity=0.121 Sum_probs=108.7
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+.....++|.+..++.|..++...++ +.+.++|+.|+||||+|+.+++..--....+ ...++....-++|..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITE 84 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 34466788999999999998886665 4678999999999999999998753111110 000111111111111
Q ss_pred HhCCCC-----CCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE-EeCchhhhh
Q 000447 214 QLGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLV 281 (1497)
Q Consensus 214 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~ 281 (1497)
.-..+. ......+.+..+.+.+. .+++-++|+|++... ...+.+...+......+.+|+ ||....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 000000 00011222333333322 245668999998665 234444444433334555554 555444443
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh-HHHHHH
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTV 338 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 338 (1497)
........+++.+++.++....+...+......- ..+....|++.++|-. .|+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2233456788999999998888877664221111 1345678888888865 444443
No 152
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=5.8e-05 Score=95.84 Aligned_cols=125 Identities=22% Similarity=0.257 Sum_probs=87.2
Q ss_pred ccceEEEcccCCC--CCCCCcc--CCCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCCCCCCCEE
Q 000447 488 KNCIAIFLHDINT--GELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESL 563 (1497)
Q Consensus 488 ~~~~~lsl~~~~~--~~lp~~~--~~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L 563 (1497)
.+++++.+.+... ..-|..+ -+|+|++|.+.+-.+...--...+.++++|+.||+|+++++.+ ..+++|+||++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4566666655321 1111111 5899999999876543332234567899999999999999988 779999999999
Q ss_pred eccCCCCCC---CcccCCCCCCcEEEeecCCCcccchh-------hcCCCccCEEeccCC
Q 000447 564 CLDQCILGD---IAIIGNLKNLEILSLCCSDIEQLPRE-------IGELTQLKLLDLSNC 613 (1497)
Q Consensus 564 ~L~~~~l~~---l~~i~~L~~L~~L~Ls~~~l~~LP~~-------i~~L~~L~~L~Ls~~ 613 (1497)
.+++-.+.. +..+.+|++|++||+|...-..-+.- -..|++||.||.+++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 998877643 46888999999999997654433311 123666666666654
No 153
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.38 E-value=0.0034 Score=74.99 Aligned_cols=175 Identities=16% Similarity=0.206 Sum_probs=100.2
Q ss_pred cCCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000447 134 YNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1497)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1497)
|......+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~ 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh
Confidence 34445667788877777776553 1 2356789999999999999999998763 222 22211
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh------------h----hhhccCCCC--
Q 000447 201 TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D----LERTGIPFG-- 262 (1497)
Q Consensus 201 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~-- 262 (1497)
..+.... .+ + ....+..+........+.+|++|+++... . +..+...+.
T Consensus 213 ----s~l~~k~---~g-----e-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 ----SEFVQKY---LG-----E-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ----HHHHHHh---cc-----h-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 1111111 11 1 12233444445555688999999976420 0 111111111
Q ss_pred CCCCCeEEEEEeCchhhhhhc-C---cccceEEecCCCHHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhCCCh
Q 000447 263 DVHRGCKILVTSRRRDVLVSE-M---HCQNNYCVSVLNKEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 263 ~~~~gs~ilvTTR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 332 (1497)
....+..||.||...+..+.+ . .-...+.++..+.++-.++|+.+..... .+.+ ..++++...|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 122466788888766554431 1 1245688988899998888887764322 2222 345666666653
No 154
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.00089 Score=83.76 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=42.3
Q ss_pred CCCcccccchHHHHHHHHHHHcC-----CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 135 NEGHEFIESRESILNDILDALRG-----PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+....+++|.++.++++..|+.. ...+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 55567788999999999999873 2346799999999999999999998653
No 155
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.35 E-value=0.0046 Score=74.33 Aligned_cols=136 Identities=20% Similarity=0.183 Sum_probs=87.8
Q ss_pred chHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000447 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1497)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 222 (1497)
.|...+.++++.+..... ++.|+|+-++||||+++.+....... .++++.........-+.+..
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~---------- 84 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLL---------- 84 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHH----------
Confidence 444566666766654433 99999999999999996666554311 55554332221111111111
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhhh-----cCcccceEEecCCCH
Q 000447 223 SDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-----EMHCQNNYCVSVLNK 297 (1497)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-----~~~~~~~~~l~~L~~ 297 (1497)
..+. .+...++..++||+|....+|+.....+.+.++. +|++|+-+...... ..|....+++-||+.
T Consensus 85 ------~~~~-~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 85 ------RAYI-ELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred ------HHHH-HhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 1111 1111277899999999999999877777666666 89998887755443 345567899999999
Q ss_pred HHHHH
Q 000447 298 EEAWS 302 (1497)
Q Consensus 298 ~e~~~ 302 (1497)
.|-..
T Consensus 157 ~Efl~ 161 (398)
T COG1373 157 REFLK 161 (398)
T ss_pred HHHHh
Confidence 98865
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0052 Score=71.59 Aligned_cols=167 Identities=12% Similarity=0.071 Sum_probs=91.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCC-------CC-CCCChHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL-------NF-CEESDSERIMML 231 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-------~~-~~~~~~~~~~~l 231 (1497)
.+.+.++|+.|+||||+|+.+++..--....+. ..+.....-+.+...-.. .. ...-..+.+..+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l 94 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVREL 94 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHH
Confidence 457889999999999999999987642211100 000000011111000000 00 000112333333
Q ss_pred HHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCch-hhhhhcCcccceEEecCCCHHHHHHHH
Q 000447 232 CNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLF 304 (1497)
Q Consensus 232 ~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf 304 (1497)
.+.+. .+++-++|+|+++.. .....+...+.....++.+|+||.+. .+..........+.+.+++.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 33332 245556678999765 34444444443333566677777665 343322344567999999999999999
Q ss_pred HHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 305 SKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
.+..+. .. .+.+..++..++|.|..+..+
T Consensus 175 ~~~~~~-~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQALPE-SD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhccc-CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 876421 11 223567789999999755443
No 157
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.30 E-value=0.0013 Score=73.94 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=105.9
Q ss_pred ccccchHHHHHHHHHHHcCCC---eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000447 139 EFIESRESILNDILDALRGPY---VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1497)
..|.+|+..+..+...+.+.. ...|.|+|-+|.|||.+.+++.+... -..+|+++-+.++.+.++.+|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHh
Confidence 457899999999999887433 24568999999999999999998773 2358999999999999999999999
Q ss_pred C-CCCCCCCh---HHHHHHHHHHHhc-------CCeEEEEEcCCCChhhhhhccCCC----C--CCCCCeEEEEEeCchh
Q 000447 216 G-LNFCEESD---SERIMMLCNRLKR-------EKKILVILDDIWTSLDLERTGIPF----G--DVHRGCKILVTSRRRD 278 (1497)
Q Consensus 216 ~-~~~~~~~~---~~~~~~l~~~l~~-------~k~~LlVlDdv~~~~~~~~l~~~l----~--~~~~gs~ilvTTR~~~ 278 (1497)
+ .+.+.... .+........+.+ ++.++||||+++...|.+++..+. . -+.+.. +|+++-...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecccc
Confidence 6 22222111 1222222222222 468999999998775544332111 0 011222 344443322
Q ss_pred hhhh--cCccc--ceEEecCCCHHHHHHHHHHH
Q 000447 279 VLVS--EMHCQ--NNYCVSVLNKEEAWSLFSKV 307 (1497)
Q Consensus 279 v~~~--~~~~~--~~~~l~~L~~~e~~~Lf~~~ 307 (1497)
-... .+|.. .++..+..+.+|..+++.+.
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2111 24443 35678888999999998663
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00068 Score=87.10 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=92.6
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccC-C---cceEEEEEecCCcCHHHHHHHHHH
Q 000447 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGR-I---FDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
...++||+++++++++.|......-+.++|++|+|||++|+.+++...... . .++.+|.. +...+ +
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l- 254 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L- 254 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h-
Confidence 456899999999999988864445567899999999999999998753221 1 24455521 11111 1
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh----------hhhhhccCCCCCCCCCeEEEEEeCchhhhh--
Q 000447 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS----------LDLERTGIPFGDVHRGCKILVTSRRRDVLV-- 281 (1497)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~-- 281 (1497)
...............+.+.+.+.++.+|++|++... .+...+..++...+ .-++|-+|...+...
T Consensus 255 --aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 255 --AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHh
Confidence 011011122334445555565567789999998643 12222222222111 234444444333211
Q ss_pred ---h-cCcccceEEecCCCHHHHHHHHHHHh
Q 000447 282 ---S-EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 282 ---~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
. .......+.+++.+.++..++++...
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 11234579999999999999998654
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.29 E-value=0.0026 Score=84.37 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=91.5
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc----ceEEE-EEecCCcCHHHHHHHH
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF----DEVVF-AEVSQTPDLKRIRREI 211 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~w-v~vs~~~~~~~~~~~i 211 (1497)
....++||+.++.++++.|......-+.++|++|+|||++|..++++....... ...+| ++++ .++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~a-- 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALIA-- 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHhh--
Confidence 455689999999999999986655667799999999999999999886422111 22333 2211 1110
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHhc-CCeEEEEEcCCCChh---------hhhhccCCCCCCCCC-eEEEEEeCchhhh
Q 000447 212 ADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRDVL 280 (1497)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~ilvTTR~~~v~ 280 (1497)
...........+..+.+.+.+ +++.+|++|++.... +...+..+.. ..| -++|-+|...+.-
T Consensus 243 -----~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 -----GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYR 315 (852)
T ss_pred -----cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHH
Confidence 000001122344455555543 468999999986442 1122222222 233 3444444433321
Q ss_pred -----hh-cCcccceEEecCCCHHHHHHHHHHHh
Q 000447 281 -----VS-EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 281 -----~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
+. .......+.++..+.++..++++...
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 10 12234568899999999999987654
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.27 E-value=0.0019 Score=85.18 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=90.2
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc----ceE-EEEEecCCcCHHHHHHH
Q 000447 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF----DEV-VFAEVSQTPDLKRIRRE 210 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~-~wv~vs~~~~~~~~~~~ 210 (1497)
.....++||+.++.++++.|......-+.++|++|+|||++|+.++.+....... +.. ++++++. ++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~-- 246 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV-- 246 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh--
Confidence 3456789999999999999986666677899999999999999999986422111 222 2232221 10
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHhc-CCeEEEEEcCCCChh---------hhhhccCCCCCCCCC-eEEEEEeCchhh
Q 000447 211 IADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRDV 279 (1497)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~ilvTTR~~~v 279 (1497)
............+..+.+.+.+ +++.+|++|++.... +...+..|.. .+| -++|-||...+.
T Consensus 247 -----ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 247 -----AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEY 319 (857)
T ss_pred -----hccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHH
Confidence 0000001122334444444432 578999999986542 1222322322 233 344444443332
Q ss_pred h-----hh-cCcccceEEecCCCHHHHHHHHHHHh
Q 000447 280 L-----VS-EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 280 ~-----~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
. +. .......+.+..-+.++..++++...
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 10 11223456777778999999887654
No 161
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.27 E-value=0.0033 Score=77.60 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=92.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1497)
...+.|+|+.|+|||+||+.+++....+..--.+++++.. ++...+...+... ....+.+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 3568999999999999999999987633212235565432 3344444444221 1123334443 3
Q ss_pred eEEEEEcCCCChh---hh-hhccCCCCC-CCCCeEEEEEeCchh---------hhhhcCcccceEEecCCCHHHHHHHHH
Q 000447 240 KILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFS 305 (1497)
Q Consensus 240 ~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~Lf~ 305 (1497)
.-+||+||+.... .+ +.+...+.. ...|..||+||.... +.. .+.....+++++.+.++-..+++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS-RFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh-HhcCCeeEEecCCCHHHHHHHHH
Confidence 4589999996531 11 122111111 123445888876542 111 24445678999999999999999
Q ss_pred HHhCCCCCCchHHHHHHHHHHHhCCChHH
Q 000447 306 KVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1497)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~c~glPLa 334 (1497)
+++.... ..-.+++...|++.++|-.-.
T Consensus 291 ~~~~~~~-~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 291 KKAEEEG-IDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHcC-CCCCHHHHHHHHcCcCCCHHH
Confidence 9885321 111245677888888877653
No 162
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.0032 Score=76.85 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=92.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcc-eEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1497)
.-+.|+|..|+|||+||+.+++..... +.. .++|++. .++..++...+... ....+.+... .+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 459999999999999999999987532 222 4566653 45566666555321 1122333332 34
Q ss_pred eEEEEEcCCCChh---hh-hhccCCCCC-CCCCeEEEEEeC-chhhh----hh---cCcccceEEecCCCHHHHHHHHHH
Q 000447 240 KILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSR-RRDVL----VS---EMHCQNNYCVSVLNKEEAWSLFSK 306 (1497)
Q Consensus 240 ~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTTR-~~~v~----~~---~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1497)
.-+||+||+.... .+ +.+...+.. ...|..||+||. ...-. .+ .+...-.+.+++.+.++-.+++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5689999997431 11 112111111 123456888885 32211 11 233345788999999999999998
Q ss_pred HhCCCCCCchHHHHHHHHHHHhCCChH
Q 000447 307 VVGNCVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
.+..... .--+++...|++...|.--
T Consensus 275 ~~~~~~~-~l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 275 MLEIEHG-ELPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHhcCC-CCCHHHHHHHHhccccCHH
Confidence 8853211 1124567778887776543
No 163
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.25 E-value=5.9e-05 Score=95.08 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=23.1
Q ss_pred cccccEEEEecCC-CCccc-HHHHhhcCCccEEEEE-ccce
Q 000447 1097 FQNLKILEVVNDK-SDNFP-ICFLQYFKNLEKLELR-WSSY 1134 (1497)
Q Consensus 1097 l~~L~~L~l~~c~-~~~~~-~~~l~~l~sL~~L~I~-c~~l 1134 (1497)
+++|+.|.+.+|. ++... ....+.+++|++|+|+ |..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 5667777766666 33332 2344566777777777 6665
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.23 E-value=0.0019 Score=77.60 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=98.6
Q ss_pred CCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc
Q 000447 136 EGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP 202 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 202 (1497)
.....+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+...
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~s- 251 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVGS- 251 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEecc-
Confidence 345567788888888777653 1 2345688999999999999999999764 233 222111
Q ss_pred CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChhh----------------hhhccCCCC--CC
Q 000447 203 DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD----------------LERTGIPFG--DV 264 (1497)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 264 (1497)
++.. ... .. ....+..+.+....+.+.+|+||+++.... ...+...+. ..
T Consensus 252 ---eL~~----k~~----Ge-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 ---ELIQ----KYL----GD-GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ---hhhh----hhc----ch-HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1111 100 00 112233344444446788999998753210 000111111 11
Q ss_pred CCCeEEEEEeCchhhhhhcC----cccceEEecCCCHHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhCCCh
Q 000447 265 HRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 265 ~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 332 (1497)
..+.+||.||...+..+.++ .....+.++..+.++..++|..+..... ...++ ..++..+.|+-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 23567888887665554321 1245789999999999999998875322 22232 35555655543
No 165
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00012 Score=78.93 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=26.0
Q ss_pred cccceeEEEEeeCCCCCCCCchhhhcCCCCccEEEeccCccchhh
Q 000447 808 FFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEI 852 (1497)
Q Consensus 808 ~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~L~~~ 852 (1497)
.+|.+-.|.+.. .++.++.....+.++|+|..|.+.+.|-...+
T Consensus 222 ~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 345555555544 34555555556667777777777776655544
No 166
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.0025 Score=69.81 Aligned_cols=57 Identities=25% Similarity=0.212 Sum_probs=43.2
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEE
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF 195 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 195 (1497)
+..++.+|......++.++.+. .++.++|++|+|||+||.+++.+.-....|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4456778888888888888764 49999999999999999999986432344555443
No 167
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.20 E-value=0.0059 Score=75.41 Aligned_cols=154 Identities=15% Similarity=0.096 Sum_probs=91.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
..+.|+|..|+|||.|++.+++.......--.+++++ ..++..++...+... ..+.+.+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 3589999999999999999999875321112345554 334444554443211 1222333442 34
Q ss_pred EEEEEcCCCCh---hhhhh-ccCCCCC-CCCCeEEEEEeCchh---------hhhhcCcccceEEecCCCHHHHHHHHHH
Q 000447 241 ILVILDDIWTS---LDLER-TGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1497)
Q Consensus 241 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1497)
-+|||||+... +.|.. +...+.. ...|..|||||+... +.. .+...-.+++.+.+.+.-.+++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S-Rf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN-RFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh-hhhcCceEEcCCCCHHHHHHHHHH
Confidence 58899999655 22322 2211211 123556888888631 122 355566889999999999999998
Q ss_pred HhCCCCCCchHHHHHHHHHHHhCCCh
Q 000447 307 VVGNCVEDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1497)
++....- .--+++..-|++.+.+..
T Consensus 458 ka~~r~l-~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 458 KAVQEQL-NAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHHhcCC-CCCHHHHHHHHHhccCCH
Confidence 8843211 112456667777666543
No 168
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00019 Score=77.31 Aligned_cols=202 Identities=19% Similarity=0.174 Sum_probs=116.6
Q ss_pred cccccEEEEecCCCCcccH--HHHhhcCCccEEEEEccceEEeecchhhhhhccccccccEEEeCCCCCCchh-hccCCc
Q 000447 1097 FQNLKILEVVNDKSDNFPI--CFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYL-WNQGFK 1173 (1497)
Q Consensus 1097 l~~L~~L~l~~c~~~~~~~--~~l~~l~sL~~L~I~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-~~~~~~ 1173 (1497)
++.+++|++..|.+..+.. ..+.++|.|+.|+|+||.+.+..... . ....+|+.|.+.+- .+ |.....
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l----p-~p~~nl~~lVLNgT----~L~w~~~~s 140 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL----P-LPLKNLRVLVLNGT----GLSWTQSTS 140 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC----c-ccccceEEEEEcCC----CCChhhhhh
Confidence 5566666666666555543 46688888888888888877654311 0 13467888888762 11 111123
Q ss_pred chhhccccceeEeeccC----CccccCCCCcccCcccEEEEecCCCCccccchhhhhccccccEEEEccCccchhhhccC
Q 000447 1174 LDSVVENLEMLEVWWCD----NLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNE 1249 (1497)
Q Consensus 1174 ~~~~l~~L~~L~i~~C~----~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~l~~~~~~~ 1249 (1497)
.+..+|.++.||++... ++..-- ....-+.+++|+...|+.....-.....+..+++..+-+..|+ +++.....
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c-~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek 218 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDNC-IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEK 218 (418)
T ss_pred hhhcchhhhhhhhccchhhhhcccccc-ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcc
Confidence 34567777777776642 111000 0012245777777777655444333344566788888888887 55544332
Q ss_pred CCccccccccccccccccccccccceecCCcccccCCCccEEEEccCCCCcccCCCC------CCCCcceEE
Q 000447 1250 GDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIFSTRE------SNTPKLQEV 1315 (1497)
Q Consensus 1250 ~~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~~~~------~~~p~L~~~ 1315 (1497)
+. -.+|++-.|+|.. .++-+...-.....||+|..|.+.+-|-...+..+. +.+|+++.+
T Consensus 219 ~s-----e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 219 GS-----EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred cC-----CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 22 1466666666644 344444332223477888888888888777665432 555555555
No 169
>CHL00176 ftsH cell division protein; Validated
Probab=97.19 E-value=0.0047 Score=78.08 Aligned_cols=171 Identities=20% Similarity=0.276 Sum_probs=95.7
Q ss_pred ccccchHH---HHHHHHHHHcCC---------CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHH
Q 000447 139 EFIESRES---ILNDILDALRGP---------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKR 206 (1497)
Q Consensus 139 ~~~~gR~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 206 (1497)
..+.|.++ ++.++++.+.+. ..+-|.++|++|+|||++|+.++..... . |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccHH----H
Confidence 34555554 444555555421 2346899999999999999999987631 1 3333211 1
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh------------h----hhhccCCCC--CCCCCe
Q 000447 207 IRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D----LERTGIPFG--DVHRGC 268 (1497)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~gs 268 (1497)
+.... .+ .....+..+.+......+++|++||++... . +..+...+. ....|-
T Consensus 252 f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11100 00 011233444555555788999999996431 1 122221111 123455
Q ss_pred EEEEEeCchhhhhhcC----cccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCC
Q 000447 269 KILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1497)
Q Consensus 269 ~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 331 (1497)
.||.||...+..+.++ .-...+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 6777776654433211 1235788888999999999998886422222 22345777777773
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.00097 Score=67.91 Aligned_cols=90 Identities=23% Similarity=0.202 Sum_probs=52.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
..+.|+|++|+||||+|+.+++...... ..++.++.+........... ...........................+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998875322 23556655543332222211 11111111222333444455555543345
Q ss_pred EEEEEcCCCChhh
Q 000447 241 ILVILDDIWTSLD 253 (1497)
Q Consensus 241 ~LlVlDdv~~~~~ 253 (1497)
.+|++|+++....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 9999999987743
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.18 E-value=0.0012 Score=66.32 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=42.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC-eE
Q 000447 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK-KI 241 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-~~ 241 (1497)
|.|+|++|+||||+|+.+++.... ..+.++.+.-.+ . ........+..+.+...+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~--------------~-~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELIS--------------S-YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHT--------------S-STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----cccccccccccc--------------c-cccccccccccccccccccccce
Confidence 579999999999999999998741 134444332110 0 11122333444444444444 89
Q ss_pred EEEEcCCCCh
Q 000447 242 LVILDDIWTS 251 (1497)
Q Consensus 242 LlVlDdv~~~ 251 (1497)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999998654
No 172
>PRK06620 hypothetical protein; Validated
Probab=97.17 E-value=0.0015 Score=71.25 Aligned_cols=133 Identities=15% Similarity=-0.002 Sum_probs=77.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
+.+.|+|++|+|||+|++.+++... . .++. .... . . +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~-------------------~-----~---~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF-------------------N-----E---EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh-------------------c-----h---hHH--hcC
Confidence 5699999999999999999877542 1 1111 0000 0 0 011 133
Q ss_pred EEEEEcCCCChhhhhhccCCCC-CCCCCeEEEEEeCchhhh---hh---cCcccceEEecCCCHHHHHHHHHHHhCCCCC
Q 000447 241 ILVILDDIWTSLDLERTGIPFG-DVHRGCKILVTSRRRDVL---VS---EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVE 313 (1497)
Q Consensus 241 ~LlVlDdv~~~~~~~~l~~~l~-~~~~gs~ilvTTR~~~v~---~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 313 (1497)
-+|++||+....+. .+..-+. -...|..||+|++..... +. .+...-+++++++++++-..++++.+....
T Consensus 87 d~lliDdi~~~~~~-~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~- 164 (214)
T PRK06620 87 NAFIIEDIENWQEP-ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS- 164 (214)
T ss_pred CEEEEeccccchHH-HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-
Confidence 57888999643211 1111111 013466899998855431 11 234445799999999998888888764211
Q ss_pred CchHHHHHHHHHHHhCCChH
Q 000447 314 DPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 314 ~~~~~~~~~~i~~~c~glPL 333 (1497)
-.--+++..-|++.+.|---
T Consensus 165 l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 165 VTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred CCCCHHHHHHHHHHccCCHH
Confidence 11124567777777776543
No 173
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.12 E-value=0.00012 Score=81.15 Aligned_cols=179 Identities=23% Similarity=0.266 Sum_probs=102.2
Q ss_pred cceEEEcccCCCCC-CCCc----c-CCCCccEEEcCCCCCCCC----CC--------chhhcCCCCccEEEecCccCcc-
Q 000447 489 NCIAIFLHDINTGE-LPEG----L-EYPHLTSLCMNPKDPFLH----IP--------DNFFAGMPKLRVLVLTRMKLLT- 549 (1497)
Q Consensus 489 ~~~~lsl~~~~~~~-lp~~----~-~~~~Lr~L~L~~~~~~~~----lp--------~~~f~~l~~Lr~L~L~~~~i~~- 549 (1497)
+++.+.+++|-++. -+.. + .+..|+.|.|.+|..... +. .....+-+.|||+..++|.+..
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 35666666666542 1111 1 467777777776654210 00 0012344667777777776653
Q ss_pred ----CCccCCCCCCCCEEeccCCCCCC--C----cccCCCCCCcEEEeecCCCc-----ccchhhcCCCccCEEeccCCC
Q 000447 550 ----LPSSFCHLPNLESLCLDQCILGD--I----AIIGNLKNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCS 614 (1497)
Q Consensus 550 ----lp~~i~~L~~Lr~L~L~~~~l~~--l----~~i~~L~~L~~L~Ls~~~l~-----~LP~~i~~L~~L~~L~Ls~~~ 614 (1497)
+...+...+.|+.+.+..|.|.. + ..+..++||++|||..|.++ .+-..+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 22345566777777777776632 1 46777788888888777665 334455667778888887775
Q ss_pred CCCC-----cChhhhcCCCCCCEEEecCCcccccccccccccCccChhhcCCCCCCcEEEeeccCC
Q 000447 615 KLKV-----IPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDA 675 (1497)
Q Consensus 615 ~l~~-----lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 675 (1497)
+.. +-...-...++|++|.+.+|.++... .......+...+.|..|++++|..
T Consensus 253 -l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da-------~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 -LENEGAIAFVDALKESAPSLEVLELAGNEITRDA-------ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -cccccHHHHHHHHhccCCCCceeccCcchhHHHH-------HHHHHHHHhcchhhHHhcCCcccc
Confidence 322 11111224567788887777665211 112223344467777788877765
No 174
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.11 E-value=0.012 Score=77.39 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 139 EFIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
..++|.++.++++.+++. ..+.+++.++|++|+|||++|+.+++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 346788888888888654 22345899999999999999999999874
No 175
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.10 E-value=0.0042 Score=77.57 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=95.8
Q ss_pred CCCcccccchHHHHHHHHHH---HcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc
Q 000447 135 NEGHEFIESRESILNDILDA---LRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP 202 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 202 (1497)
......+.|.++.++++.++ +.. ...+-+.++|++|+|||++|+.+++.... . ++.++.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~-- 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG-- 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH--
Confidence 33455667776665555443 331 12345889999999999999999987532 2 232221
Q ss_pred CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh------------hh----hhccCCCC--CC
Q 000447 203 DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------DL----ERTGIPFG--DV 264 (1497)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~----~~l~~~l~--~~ 264 (1497)
.++.... .+ . ....+..+.+......+.+|++||++... .+ ..+...+. ..
T Consensus 122 --~~~~~~~---~g-----~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 --SDFVEMF---VG-----V-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHHHHHH---hc-----c-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111111 00 0 11233444444444677899999985531 01 11111111 12
Q ss_pred CCCeEEEEEeCchhhhhhcC----cccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh
Q 000447 265 HRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 265 ~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1497)
..+-.||.||......+.++ .-...+.++..+.++-.++|+.+........+ .....+++.+.|.-
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 23455666776554333211 22457888888998999999888754322221 12347788887743
No 176
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.013 Score=67.53 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcc----------------eEEEEEecCCcCHHHHH
Q 000447 146 SILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFD----------------EVVFAEVSQTPDLKRIR 208 (1497)
Q Consensus 146 ~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----------------~~~wv~vs~~~~~~~~~ 208 (1497)
...+++...+..++++ .+.++|+.|+||+++|..+++..--..... -..|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~----- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT----- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc-----
Confidence 4456677777665554 699999999999999999998754221111 011221000000
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCChh--hhhhccCCCCCCCCCeEEEEEeCc-hhhhh
Q 000447 209 REIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRR-RDVLV 281 (1497)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~ 281 (1497)
+......-..+.+..+.+.+. .+++-++|+|+++... .-..+...+..-..++.+|++|.+ ..+..
T Consensus 86 -------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 86 -------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred -------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 000000011233333333332 2577799999987662 223333333333346666666654 44444
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
........+.+.+++.+++.+.+.+. | .+ +..+..++..++|.|+.+..+
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 23344668899999999999888753 2 11 222567899999999866543
No 177
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.013 Score=65.75 Aligned_cols=187 Identities=18% Similarity=0.207 Sum_probs=111.4
Q ss_pred ccCCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec
Q 000447 133 SYNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS 199 (1497)
Q Consensus 133 ~~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 199 (1497)
.|...+..+.|-++.+++|.+... . +..+=|.+||++|.|||-||++|+++-. ..| +.|.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtF-----Irvv 217 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATF-----IRVV 217 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceE-----EEec
Confidence 344556677888888888888765 1 3456789999999999999999999864 223 3333
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh------------h----hhhccCCCCC
Q 000447 200 QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D----LERTGIPFGD 263 (1497)
Q Consensus 200 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~ 263 (1497)
.. +-+++-|.+ ....+..+.+-.+...+..|.+|+++... . .-.+...+..
T Consensus 218 gS---ElVqKYiGE----------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 218 GS---ELVQKYIGE----------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred cH---HHHHHHhcc----------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 21 122222211 12344455555666788999999986441 0 0011111111
Q ss_pred --CCCCeEEEEEeCchhhhhhc---Ccc-cceEEecCCCHHHHHHHHHHHhCC--CCCCchHHHHHHHHHHHhCCCh---
Q 000447 264 --VHRGCKILVTSRRRDVLVSE---MHC-QNNYCVSVLNKEEAWSLFSKVVGN--CVEDPDLQTVAIQVANECGGLP--- 332 (1497)
Q Consensus 264 --~~~gs~ilvTTR~~~v~~~~---~~~-~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~glP--- 332 (1497)
....-|||..|-..++.+.+ -|. ++.++++.=+.+.=.++|+-+... ...+-+++ .+++.+.|.-
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAd 360 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGAD 360 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHH
Confidence 23456899988877766641 222 457788755555556677767652 23334444 5666666653
Q ss_pred -HHHHHHHHHhc
Q 000447 333 -IAILTVARTLR 343 (1497)
Q Consensus 333 -Lai~~~~~~L~ 343 (1497)
-||.+=|++++
T Consensus 361 lkaictEAGm~A 372 (406)
T COG1222 361 LKAICTEAGMFA 372 (406)
T ss_pred HHHHHHHHhHHH
Confidence 45666667664
No 178
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.08 E-value=9.7e-05 Score=81.78 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=49.1
Q ss_pred CCCCccEEEecCccCc-----cCCccCCCCCCCCEEeccCCCCCCC---------------cccCCCCCCcEEEeecCCC
Q 000447 533 GMPKLRVLVLTRMKLL-----TLPSSFCHLPNLESLCLDQCILGDI---------------AIIGNLKNLEILSLCCSDI 592 (1497)
Q Consensus 533 ~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~l---------------~~i~~L~~L~~L~Ls~~~l 592 (1497)
++++|++|+||+|.+. .+-.-|.+++.|+.|.|.+|.++.. ..++.-.+||++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3445555555555443 1112234455555555555554321 1234445556665555554
Q ss_pred cccc-----hhhcCCCccCEEeccCCCCCCC---cChhhhcCCCCCCEEEecCCccc
Q 000447 593 EQLP-----REIGELTQLKLLDLSNCSKLKV---IPPNVISSLSQLEELYLGNTSVE 641 (1497)
Q Consensus 593 ~~LP-----~~i~~L~~L~~L~Ls~~~~l~~---lp~~~l~~L~~L~~L~l~~~~~~ 641 (1497)
..-+ ..+...+.|+.+.+..|..-.. +-...+..+++|+.|++.+|.++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 4222 2244445555555555431100 00111445555666665555543
No 179
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.96 E-value=0.004 Score=80.89 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=87.4
Q ss_pred cccccchHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000447 138 HEFIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1497)
....+|.++.+++|+++|. .....++.++|++|+||||+|+.++.... ..|-. +..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEE---EEcCCCCCHHHhccch
Confidence 3457799999999998876 13456899999999999999999998653 23322 3333333332222111
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChhh------hhhccCCCCC---------------CCCCeEE
Q 000447 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD------LERTGIPFGD---------------VHRGCKI 270 (1497)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~---------------~~~gs~i 270 (1497)
+...... .....+.+. ... ..+-++++|+++.... .+.+...+.+ .-.+.-+
T Consensus 396 -~~~~g~~----~G~~~~~l~-~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYIGSM----PGKLIQKMA-KVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccCCCC----CcHHHHHHH-hcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 0011111 111111111 111 2344788999865411 1112111111 1123334
Q ss_pred EEEeCchhhhhhcCcccceEEecCCCHHHHHHHHHHHh
Q 000447 271 LVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 271 lvTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
|.|+....+.....+....+.+.+++++|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44555444433334455688999999999888887765
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.013 Score=68.84 Aligned_cols=160 Identities=9% Similarity=-0.002 Sum_probs=88.3
Q ss_pred ccc-hHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000447 141 IES-RESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 141 ~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1497)
++| .+..++.+...+..+++ +...++|+.|+||||+|+.+++..--....... .......-+.+...-..+
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCCC
Confidence 455 66677778777775554 467999999999999999998875321111000 000000111110000000
Q ss_pred ------CCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCch-hhhhhcCc
Q 000447 219 ------FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMH 285 (1497)
Q Consensus 219 ------~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~ 285 (1497)
.......+.+..+.+.+. .+++-++|+|+++.. .....+...+.....++.+|++|.+. .+......
T Consensus 80 ~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 80 VHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS 159 (329)
T ss_pred EEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence 000011223333333332 246668999998665 23444555554444567777777654 33332234
Q ss_pred ccceEEecCCCHHHHHHHHHHH
Q 000447 286 CQNNYCVSVLNKEEAWSLFSKV 307 (1497)
Q Consensus 286 ~~~~~~l~~L~~~e~~~Lf~~~ 307 (1497)
....+++.++++++..+.+.+.
T Consensus 160 Rc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 160 RCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hceeeeCCCCCHHHHHHHHHHc
Confidence 4668999999999998888653
No 181
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.96 E-value=0.021 Score=61.70 Aligned_cols=229 Identities=16% Similarity=0.147 Sum_probs=125.9
Q ss_pred ccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHh----ccCCcceEEEEEecCC----------c--
Q 000447 139 EFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK----EGRIFDEVVFAEVSQT----------P-- 202 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~vs~~----------~-- 202 (1497)
..+.++++...++.......+.+-..++|+.|.||-|.+..+.+..- .+-.-+...|.+-+.. .
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 34566777777777765567788999999999999999988887643 1122344455433322 1
Q ss_pred ---------CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeE-EEEEcCCCCh--hhhhhccCCCCCCCCCeEE
Q 000447 203 ---------DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKI-LVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1497)
Q Consensus 203 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 270 (1497)
..+-+.+++++......+-+. ...+.| ++|+-.+++. +.-.++..-...-...+|+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 123444444444433211110 012344 5666666554 2222233222233456777
Q ss_pred EEEeCch-hhhhhcCcccceEEecCCCHHHHHHHHHHHhCCC-CCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCC---
Q 000447 271 LVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNC-VEDPDLQTVAIQVANECGGLPIAILTVARTLRNK--- 345 (1497)
Q Consensus 271 lvTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~--- 345 (1497)
|+..-.- .+........-.++++..+++|-...+++.+..+ ..-+ ++++.+|+++++|.---...+-...+-+
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~ 238 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEP 238 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence 7633211 1111011233467899999999999999887432 2222 6789999999998754433333333211
Q ss_pred --------ChHHHHHHHHHHHhhccCccchHHHHHhHHHHHhccC
Q 000447 346 --------PLFVWKKALQELRFSARNFTGLEALLGSTIELIYNYL 382 (1497)
Q Consensus 346 --------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~lsy~~L 382 (1497)
+..+|+.++.+..........-..++ .+-..-|+-|
T Consensus 239 ~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~-~vR~~LYeLL 282 (351)
T KOG2035|consen 239 FTANSQVIPKPDWEIYIQEIARVILKEQSPAKLL-EVRGRLYELL 282 (351)
T ss_pred ccccCCCCCCccHHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHH
Confidence 23459999988764332222223333 4444445444
No 182
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.015 Score=68.04 Aligned_cols=149 Identities=23% Similarity=0.304 Sum_probs=89.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1497)
.+...+.+.|++|+|||+||..++... .|..+--++-..-. |. .+...-..+....+..-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~mi-------------G~--sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMI-------------GL--SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHcc-------------Cc--cHHHHHHHHHHHHHHhhc
Confidence 356678899999999999999999764 36654433211100 10 000111122222222223
Q ss_pred CCeEEEEEcCCCChhhhhhccCCCCC-------------CCCCeE--EEEEeCchhhhhhcCcc----cceEEecCCCH-
Q 000447 238 EKKILVILDDIWTSLDLERTGIPFGD-------------VHRGCK--ILVTSRRRDVLVSEMHC----QNNYCVSVLNK- 297 (1497)
Q Consensus 238 ~k~~LlVlDdv~~~~~~~~l~~~l~~-------------~~~gs~--ilvTTR~~~v~~~~~~~----~~~~~l~~L~~- 297 (1497)
..--.||+||+....+|-.++..|.+ ..+|-| |+-||..+.|... |+- ...|+++.++.
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCccCch
Confidence 56678999999988888777765432 223445 4447777888774 553 34789999876
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 000447 298 EEAWSLFSKVVGNCVEDPDLQTVAIQVANEC 328 (1497)
Q Consensus 298 ~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c 328 (1497)
++..+.++..- ...+.+.+.++.+.+.+|
T Consensus 676 ~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 676 EQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 77777776532 123344455556666555
No 183
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.11 Score=60.78 Aligned_cols=85 Identities=14% Similarity=0.048 Sum_probs=48.2
Q ss_pred EEEEeCchhhhhhc---Ccc-cceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH-HHHhcC
Q 000447 270 ILVTSRRRDVLVSE---MHC-QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV-ARTLRN 344 (1497)
Q Consensus 270 ilvTTR~~~v~~~~---~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~-~~~L~~ 344 (1497)
||.||-..+-.+.+ .|. +..+.|.-=+.+.-..||..+.|...++.- ..+|.+...|.-+.=..+ +.++++
T Consensus 341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L----~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRL----FDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcch----hHHHHHHhhcCccCHHHHHHHHhhc
Confidence 45588877666542 222 335778888999999999999985443443 344444444543333344 444555
Q ss_pred CChHH--HHHHHHHHH
Q 000447 345 KPLFV--WKKALQELR 358 (1497)
Q Consensus 345 ~~~~~--w~~~l~~l~ 358 (1497)
+.+.. -+.+.+.+.
T Consensus 417 ~~dad~~lk~Lv~~l~ 432 (457)
T KOG0743|consen 417 KNDADVALKGLVEALE 432 (457)
T ss_pred cccHHHHHHHHHHHHH
Confidence 53222 444444443
No 184
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.96 E-value=7.3e-05 Score=71.37 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=30.5
Q ss_pred cCCCCCCcEEEeecCCCcccchhhcCC-CccCEEeccCCCCCCCcChhhhcCCCCCCEEEecCCcc
Q 000447 576 IGNLKNLEILSLCCSDIEQLPREIGEL-TQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSV 640 (1497)
Q Consensus 576 i~~L~~L~~L~Ls~~~l~~LP~~i~~L-~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 640 (1497)
+.+.++|...+|++|.++.+|..+... +.+.+|++++|. +.++|.+ +..++.|+.|+++.|.+
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcccccCcc
Confidence 334444444455555555555444322 245555555544 5555555 45555555555555444
No 185
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.046 Score=63.12 Aligned_cols=175 Identities=11% Similarity=0.063 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC-------
Q 000447 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN------- 218 (1497)
Q Consensus 147 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------- 218 (1497)
..+++...+..+++ ..+-++|+.|+||+++|..+++..--.+.-+ ...+....-+.+...-..+
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--------EACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--------CCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 45566666655554 5899999999999999999998653211100 0000001111111000000
Q ss_pred C-CCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCc-hhhhhhcCcccceE
Q 000447 219 F-CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEMHCQNNY 290 (1497)
Q Consensus 219 ~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~~~~~~~~ 290 (1497)
. ...-..+.+..+.+.+. .+++-++|+|+++.. .....+...+.....++.+|++|.+ ..+..........+
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 0 00112223333333332 256678899998765 3445555445444456666665554 45555334456789
Q ss_pred EecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 291 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
.+.+++++++.+.+... |. + .+..+++.++|.|+.+..+
T Consensus 163 ~~~~~~~~~~~~~L~~~-~~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQ-GI--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eCCCCCHHHHHHHHHHc-CC--c------hHHHHHHHcCCCHHHHHHH
Confidence 99999999999988753 21 1 1346788999999866543
No 186
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.91 E-value=0.0086 Score=62.37 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCC------------------cceEEEEEecCC--
Q 000447 143 SRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI------------------FDEVVFAEVSQT-- 201 (1497)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~~~~wv~vs~~-- 201 (1497)
|.++..+.+.+.+..++++ .+.++|+.|+||+++|..+++..--... ..-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5567777788888776665 6899999999999999999987532221 122333332221
Q ss_pred -cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCchh
Q 000447 202 -PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1497)
Q Consensus 202 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~~ 278 (1497)
..++++. ++.+.+..... .+++-++|+||++.. +.+.++...+.....++++|++|++..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2333322 33333322211 246778999999875 445555555555557888888888765
Q ss_pred -hhhhcCcccceEEecCCC
Q 000447 279 -VLVSEMHCQNNYCVSVLN 296 (1497)
Q Consensus 279 -v~~~~~~~~~~~~l~~L~ 296 (1497)
+..........+.+.+++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 333223344566666653
No 187
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.91 E-value=0.0097 Score=72.41 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=86.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
..+.|+|+.|+|||+||+.+++..... --.+++++ ..++...+...+... ..+.+.... .+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHc--ccC
Confidence 568899999999999999999987532 23345554 334445555554321 112222222 244
Q ss_pred EEEEEcCCCChhh--h--hhccCCCCC-CCCCeEEEEEeCch-h----hhhh---cCcccceEEecCCCHHHHHHHHHHH
Q 000447 241 ILVILDDIWTSLD--L--ERTGIPFGD-VHRGCKILVTSRRR-D----VLVS---EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1497)
Q Consensus 241 ~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~ilvTTR~~-~----v~~~---~~~~~~~~~l~~L~~~e~~~Lf~~~ 307 (1497)
-+|++||+..... + +.+...+.. ...|..||+||... . +..+ .+...-.+.+.+++.++-..+++++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5888999865421 1 122221110 12355688888543 1 1111 2344568899999999999999988
Q ss_pred hCCCCCCchHHHHHHHHHHHhCCC
Q 000447 308 VGNCVEDPDLQTVAIQVANECGGL 331 (1497)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~c~gl 331 (1497)
+..... .-.+++..-|++...|-
T Consensus 284 ~~~~~~-~l~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEALSI-RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCC
Confidence 742211 11134555566665543
No 188
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.026 Score=65.32 Aligned_cols=176 Identities=7% Similarity=0.026 Sum_probs=99.7
Q ss_pred HHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC-------
Q 000447 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN------- 218 (1497)
Q Consensus 147 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------- 218 (1497)
..+++...+..+++ ..+.++|+.|+||+++|+.++...--..... ...++....-+.+...-..+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 34556666665554 5788999999999999999998764221110 00111111111111110000
Q ss_pred CCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCch-hhhhhcCcccceEE
Q 000447 219 FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYC 291 (1497)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~~ 291 (1497)
....-..+.+..+.+.+. ++++-++|+|+++.. .....+...+.....++.+|++|.+. .+..........+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 000112333444444433 257778899998766 33444444444444566666666654 44432234467899
Q ss_pred ecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000447 292 VSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1497)
Q Consensus 292 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 335 (1497)
+.++++++..+.+.+..+. . ...+...++.++|.|..+
T Consensus 163 ~~~~~~~~~~~~L~~~~~~---~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSSA---E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHhcc---C---hHHHHHHHHHcCCCHHHH
Confidence 9999999999998876432 1 112556778899999643
No 189
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.013 Score=73.28 Aligned_cols=175 Identities=18% Similarity=0.194 Sum_probs=106.3
Q ss_pred ccccchH---HHHHHHHHHHcCC---------CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHH
Q 000447 139 EFIESRE---SILNDILDALRGP---------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKR 206 (1497)
Q Consensus 139 ~~~~gR~---~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 206 (1497)
..+.|-+ +|++++++.|+.. -.+=+.++|++|+|||-||++++-...+- +++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH-----
Confidence 3444544 5666777777631 24568999999999999999999887532 3555432
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChhh-----------------hhhccCCCCCCC--CC
Q 000447 207 IRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD-----------------LERTGIPFGDVH--RG 267 (1497)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----------------~~~l~~~l~~~~--~g 267 (1497)
+..+.+... ....+..+....+.+.++++.+|+++.... +..+........ .+
T Consensus 379 ---EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 111111111 134566666667678899999998765411 111111122122 22
Q ss_pred eEEEEEeCchhhhhh---cCcc-cceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHH
Q 000447 268 CKILVTSRRRDVLVS---EMHC-QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1497)
Q Consensus 268 s~ilvTTR~~~v~~~---~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 334 (1497)
--++-+|...++.+. ..|. ++.+.++.=+...-.++|..++....-+.+..++++ |+....|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 233446666666554 1222 456788888888899999999875444344455666 88888887744
No 190
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.017 Score=68.83 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCcccccchHHHHHHHHHHHc---C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000447 136 EGHEFIESRESILNDILDALR---G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1497)
.....+.|.++.+.++.+++. . ...+=|.+||++|.|||.||+++++...+ .| +.++..
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isAp-- 257 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISAP-- 257 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----Eeecch--
Confidence 346677889988888877764 1 24567899999999999999999998853 23 333322
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
+|.....+. .+..+.++.+...+.-++++++|+++-.
T Consensus 258 ------eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ------EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ------hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 222222222 3345666777777789999999998654
No 191
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.84 E-value=0.036 Score=59.80 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=103.5
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec-CCcCHHHHHHHHHHHhCCCCCCCChH----HHHHHH
Q 000447 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS-QTPDLKRIRREIADQLGLNFCEESDS----ERIMML 231 (1497)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~l 231 (1497)
.++.+++.++|.-|.|||.+++....-... |.++-|.+. ...+...+...|...+..+ +..... .....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHHH
Confidence 456679999999999999999955544321 222223333 4457788888898888772 222221 222334
Q ss_pred HHHHhcCCe-EEEEEcCCCCh--hhhhhccCCCCCCCCC---eEEEEEeCch-------hhhhhcC-cccceEEecCCCH
Q 000447 232 CNRLKREKK-ILVILDDIWTS--LDLERTGIPFGDVHRG---CKILVTSRRR-------DVLVSEM-HCQNNYCVSVLNK 297 (1497)
Q Consensus 232 ~~~l~~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~g---s~ilvTTR~~-------~v~~~~~-~~~~~~~l~~L~~ 297 (1497)
..-.++++| ..+++||.... ...+.+.........+ -+|+..-..+ .+..... .....|++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 445556788 99999998655 2222222111111111 1233322211 1111111 1122389999999
Q ss_pred HHHHHHHHHHhCCCC-CCc-hHHHHHHHHHHHhCCChHHHHHHHH
Q 000447 298 EEAWSLFSKVVGNCV-EDP-DLQTVAIQVANECGGLPIAILTVAR 340 (1497)
Q Consensus 298 ~e~~~Lf~~~~~~~~-~~~-~~~~~~~~i~~~c~glPLai~~~~~ 340 (1497)
++...+++.+.+... +.+ -..+....|..+..|.|.+|..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999988874221 111 1234567888999999999887654
No 192
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.83 E-value=0.023 Score=69.58 Aligned_cols=176 Identities=12% Similarity=0.103 Sum_probs=93.6
Q ss_pred CcccccchHHHHHHHHHHHc-------C---CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHH
Q 000447 137 GHEFIESRESILNDILDALR-------G---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKR 206 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~-------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 206 (1497)
....+.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.... .| +-++.+ .
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~--~~---~~l~~~------~ 294 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL--PL---LRLDVG------K 294 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEEEhH------H
Confidence 34567787766655554211 1 23456899999999999999999998642 22 112211 1
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChhh--------------hhhccCCCCCCCCCeEEEE
Q 000447 207 IRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD--------------LERTGIPFGDVHRGCKILV 272 (1497)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------------~~~l~~~l~~~~~gs~ilv 272 (1497)
+.. ....+ ....+..+.+......+++|++|+++.... ...+...+.....+--||.
T Consensus 295 ----l~~----~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 ----LFG----GIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----hcc----cccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 110 11111 122344444444456899999999864310 0001111111222334555
Q ss_pred EeCchhhhhhcC----cccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh
Q 000447 273 TSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 273 TTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1497)
||.+..-.+..+ .-+..+.++.-+.++-.++|+.+............-...+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 776554333211 224577888888999999998887532111000111346667766654
No 193
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.034 Score=67.46 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=82.6
Q ss_pred ccCCCcccccchHHHHHHHHHHHc------------C-CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec
Q 000447 133 SYNEGHEFIESRESILNDILDALR------------G-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS 199 (1497)
Q Consensus 133 ~~~~~~~~~~gR~~~~~~l~~~L~------------~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 199 (1497)
.+...-..+.|-++.+.+|-+... . +..+-|..+|++|.|||++|+++++... ..| +.|.
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~--~nF-----lsvk 500 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG--MNF-----LSVK 500 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc--CCe-----eecc
Confidence 334445566667665555554433 1 4567899999999999999999999875 344 3332
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChhh-------------hhhccCCCCCCCC
Q 000447 200 QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD-------------LERTGIPFGDVHR 266 (1497)
Q Consensus 200 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~ 266 (1497)
.. + +.... ..+ .+..+..+.+...+--+.+|.||+++.... +..+..-+.....
T Consensus 501 gp----E----L~sk~----vGe-SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 501 GP----E----LFSKY----VGE-SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred CH----H----HHHHh----cCc-hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 21 0 11110 111 223344444444445668888887754410 1111111221111
Q ss_pred -CeEEEE--EeCchhhhhhcCc---ccceEEecCCCHHHHHHHHHHHhCC
Q 000447 267 -GCKILV--TSRRRDVLVSEMH---CQNNYCVSVLNKEEAWSLFSKVVGN 310 (1497)
Q Consensus 267 -gs~ilv--TTR~~~v~~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~ 310 (1497)
+.-+|| |-|...+-...+. -++.+.++.=+.+--.++|+.++..
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 222333 3333332222233 2445666666667778899988853
No 194
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.83 E-value=0.078 Score=57.66 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=72.4
Q ss_pred cCCCcccccchHHHHHHHHHH----HcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000447 134 YNEGHEFIESRESILNDILDA----LRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~----L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1497)
.+.....++|-+..++.|++= +.+....-+.+||..|+|||++++++.+....+. .--|.|.+.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------- 89 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------- 89 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------
Confidence 344566778888877777753 3355566788899999999999999999886432 112333221
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHh-cCCeEEEEEcCCCCh---hhhhhccCCCCC----CCCCeEEEEEeCchhhhh
Q 000447 210 EIADQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFGD----VHRGCKILVTSRRRDVLV 281 (1497)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~---~~~~~l~~~l~~----~~~gs~ilvTTR~~~v~~ 281 (1497)
....+..+.+.+. +..||+|.+||..-. .....+...+.. ...+..|..||-.++...
T Consensus 90 --------------~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 90 --------------DLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred --------------HhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 1112223333333 368999999998544 223333333321 122344555666666555
Q ss_pred h
Q 000447 282 S 282 (1497)
Q Consensus 282 ~ 282 (1497)
.
T Consensus 156 E 156 (249)
T PF05673_consen 156 E 156 (249)
T ss_pred h
Confidence 3
No 195
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.016 Score=70.86 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=89.9
Q ss_pred ccccchHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000447 139 EFIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1497)
..-+|-++.+++|++.|. +-+-+++++||++|+|||.|++.+++-.. +.| +-++++.-.|..++..-=-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHHHhccccc
Confidence 344688899999999886 23457999999999999999999998774 444 2234444444333221000
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHhc--CCeEEEEEcCCCChh-hh-----hhccCCCCCCC-------------CCeE-E
Q 000447 213 DQLGLNFCEESDSERIMMLCNRLKR--EKKILVILDDIWTSL-DL-----ERTGIPFGDVH-------------RGCK-I 270 (1497)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~-~~-----~~l~~~l~~~~-------------~gs~-i 270 (1497)
..+ . +-.. ++.+.+++ .++=+++||+++... ++ .++..-+.+.. -=|+ +
T Consensus 398 TYI-----G-amPG---rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYI-----G-AMPG---KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccc-----c-cCCh---HHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 000 0 0111 22222322 467788999986541 00 11111111100 1133 4
Q ss_pred EEEeCch-h-hhhhcCcccceEEecCCCHHHHHHHHHHHh
Q 000447 271 LVTSRRR-D-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 271 lvTTR~~-~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
.|||-|. + +....+....+|++.+.+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4455443 2 222235567899999999999999888776
No 196
>PRK08118 topology modulation protein; Reviewed
Probab=96.81 E-value=0.00068 Score=71.01 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=29.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc-CCcceEEE
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVF 195 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 195 (1497)
+.|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987543 45777776
No 197
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.0082 Score=69.58 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=67.5
Q ss_pred HHHHHHHHcC-CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcce-EEEEEecCC-cCHHHHHHHHHHHhCCCCCCCCh
Q 000447 148 LNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQT-PDLKRIRREIADQLGLNFCEESD 224 (1497)
Q Consensus 148 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~ 224 (1497)
..++++.+.- .+-..+.|+|.+|+|||||++.+++..... +-+. ++|+.+.+. .++.++.+.+...+.....++..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 4457777661 233456999999999999999999877532 3344 467777655 46788888888877654332222
Q ss_pred HH------HHHHHHHHHh-cCCeEEEEEcCCCCh
Q 000447 225 SE------RIMMLCNRLK-REKKILVILDDIWTS 251 (1497)
Q Consensus 225 ~~------~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1497)
.. .+....+++. ++++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 21 1222333333 489999999998543
No 198
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.79 E-value=0.002 Score=66.23 Aligned_cols=98 Identities=20% Similarity=0.394 Sum_probs=49.8
Q ss_pred CccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCccCCC-CCCCCEEeccCCCCCCC---cccCCCCCCcEEE
Q 000447 511 HLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH-LPNLESLCLDQCILGDI---AIIGNLKNLEILS 586 (1497)
Q Consensus 511 ~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~ 586 (1497)
+...++|..|.+ ..++. |..++.|..|.|++|.|..+-..+.. +++|..|.|.+|.|..+ ..+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl-~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDL-RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccch-hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 444555555543 22222 45566666666666666655444433 33466666666655333 4455555666666
Q ss_pred eecCCCcccch----hhcCCCccCEEecc
Q 000447 587 LCCSDIEQLPR----EIGELTQLKLLDLS 611 (1497)
Q Consensus 587 Ls~~~l~~LP~----~i~~L~~L~~L~Ls 611 (1497)
+-+|.++..+. -+.++++|++||..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 66555543321 13444444444443
No 199
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.76 E-value=0.055 Score=71.73 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHHHcC---------CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 139 EFIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
..++|.+..++.+...+.. ....++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4577988888888877651 123578999999999999999999765
No 200
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.74 E-value=0.046 Score=64.01 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHH-HHHHHHHhccCCcceEEEEEecCC---cCHHHHHHHHHHHhC---
Q 000447 144 RESILNDILDALRGPYVYMIGVYGMAGIGKTTLV-KEVARLAKEGRIFDEVVFAEVSQT---PDLKRIRREIADQLG--- 216 (1497)
Q Consensus 144 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~--- 216 (1497)
|.+.+++|-.||.+..-..|.|.||-|.||+.|+ .++.++.+ .+..+++.+- .+-..+++.++.++|
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999888889999999999999999 77766542 2566655432 234455555555443
Q ss_pred --------------------CCCCC--CChHHHHHHHHHH----Hh-------------------------cCCeEEEEE
Q 000447 217 --------------------LNFCE--ESDSERIMMLCNR----LK-------------------------REKKILVIL 245 (1497)
Q Consensus 217 --------------------~~~~~--~~~~~~~~~l~~~----l~-------------------------~~k~~LlVl 245 (1497)
+.... ++.+..+..++.. ++ ..++=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 11111 2222222222111 00 013568999
Q ss_pred cCCCCh-----------hhhhhccCCCCCCCCCeEEEEEeCchhhhhh---cC--cccceEEecCCCHHHHHHHHHHHhC
Q 000447 246 DDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS---EM--HCQNNYCVSVLNKEEAWSLFSKVVG 309 (1497)
Q Consensus 246 Ddv~~~-----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~---~~--~~~~~~~l~~L~~~e~~~Lf~~~~~ 309 (1497)
|+.-.. .+|..... ..+=.+||++|-+...... ++ ...+.+.+...+++.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 996443 24654221 2234578998877655443 23 3456889999999999999999885
Q ss_pred CCCCC-------------------chHHHHHHHHHHHhCCChHHHHHHHHHhcCCCh
Q 000447 310 NCVED-------------------PDLQTVAIQVANECGGLPIAILTVARTLRNKPL 347 (1497)
Q Consensus 310 ~~~~~-------------------~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~ 347 (1497)
..... .....-....++.+||--.-+..+++.++....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~ 287 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGES 287 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCC
Confidence 32110 122334567788999999999999999887543
No 201
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.026 Score=66.38 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=79.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
.-..+.|||..|.|||.|++++++.......=..++.++ .+....+....+.. ...+...+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y--- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY--- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh---
Confidence 366899999999999999999999886332212344432 33444444443322 1122222222
Q ss_pred CeEEEEEcCCCChh---hhhh-ccCCCCC-CCCCeEEEEEeCchh---------hhhhcCcccceEEecCCCHHHHHHHH
Q 000447 239 KKILVILDDIWTSL---DLER-TGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLF 304 (1497)
Q Consensus 239 k~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~Lf 304 (1497)
.--++++||++-.. .|+. +.-.|.. ...|-.||+|++..+ +.. .+...-.+++++.+.+....++
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S-R~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS-RLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH-HHhceeEEeeCCCCHHHHHHHH
Confidence 22388999986542 2221 2111211 123447999986432 122 3455678999999999999999
Q ss_pred HHHhC
Q 000447 305 SKVVG 309 (1497)
Q Consensus 305 ~~~~~ 309 (1497)
.+++.
T Consensus 254 ~kka~ 258 (408)
T COG0593 254 RKKAE 258 (408)
T ss_pred HHHHH
Confidence 98773
No 202
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.71 E-value=0.011 Score=77.78 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHHc---------CCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 139 EFIESRESILNDILDALR---------GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
..++|.++.++.+.+.+. +....++.++|+.|+|||.+|+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999988874 1234589999999999999999998876
No 203
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.70 E-value=0.023 Score=60.59 Aligned_cols=170 Identities=19% Similarity=0.282 Sum_probs=103.6
Q ss_pred cccccchHHHHHH---HHHHHcCC------CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHH
Q 000447 138 HEFIESRESILND---ILDALRGP------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1497)
Q Consensus 138 ~~~~~gR~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (1497)
...++|.++.+.+ |++.|.+. ..+-|..+|++|.|||-+|+++++...+- | +-|. ..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~---l~vk---------at 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L---LLVK---------AT 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e---EEec---------hH
Confidence 4567788766544 44555532 46789999999999999999999987532 2 1121 11
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh--------------hhhhccCCCC--CCCCCeEEEE
Q 000447 209 REIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--------------DLERTGIPFG--DVHRGCKILV 272 (1497)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------------~~~~l~~~l~--~~~~gs~ilv 272 (1497)
+-|.+..| +....+.+++++..+.-++++.+|+++-.. ...++...+. ..+.|-..|-
T Consensus 186 ~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 186 ELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 12222222 123466777888877899999999875431 1222222222 2455777777
Q ss_pred EeCchhhhhhcCcc--cceEEecCCCHHHHHHHHHHHhCCC--CCCchHHHHHHHHHHHhCCC
Q 000447 273 TSRRRDVLVSEMHC--QNNYCVSVLNKEEAWSLFSKVVGNC--VEDPDLQTVAIQVANECGGL 331 (1497)
Q Consensus 273 TTR~~~v~~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~gl 331 (1497)
.|.+.+..+.+... ...|+..--+++|-.+++..++..- ..... .+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 77777766642222 3456777778889999998888421 12222 34566666664
No 204
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.01 Score=71.87 Aligned_cols=190 Identities=12% Similarity=0.132 Sum_probs=116.9
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1497)
+....+++|.+.....|...+..+++ .-....|+-|+||||+|+.++.-.-- .-| .....+.....-++|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC------~~~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNC------ENG-PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcC------CCC-CCCCcchhhhhhHhhhc
Confidence 33456678999888888888875543 46788999999999999999986531 111 22233333444445544
Q ss_pred HhCCCCCC-----CChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEE-EeCchhhhh
Q 000447 214 QLGLNFCE-----ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLV 281 (1497)
Q Consensus 214 ~l~~~~~~-----~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~ 281 (1497)
.-..+..+ ....+.+..+.+... +++-=+.|+|+|.-. ..|..+..-+-..-..-+.|. ||-...+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 31111111 123344555555554 245568899998655 567666655543333444444 555555554
Q ss_pred hcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh
Q 000447 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1497)
........+.+..++.++-...+...+..+....+ ++....|++..+|..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSL 214 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCCh
Confidence 44556778999999999999888888764333222 345567777777744
No 205
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.64 E-value=0.014 Score=76.36 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=60.0
Q ss_pred ccccchHHHHHHHHHHHcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000447 139 EFIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1497)
..++|.++.++.+...+.. ....++.++|+.|+|||+||+.++... +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc---
Confidence 4466888888888877651 134578999999999999999999876 23345555544222111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
+..-++.. +..-..+....+.+.+.+...-+|+||+++..
T Consensus 526 -~~~lig~~-~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 -VSRLIGAP-PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -HHHHhcCC-CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11112211 11000111223344444445569999999765
No 206
>PRK08116 hypothetical protein; Validated
Probab=96.63 E-value=0.0043 Score=70.33 Aligned_cols=102 Identities=22% Similarity=0.199 Sum_probs=59.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
..+.++|..|+|||.||.++++....+ -..+++++ ..+++..+......... .....+.+.+. +-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~-~~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLV-NA- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhc-CC-
Confidence 458999999999999999999998633 23456665 34455566554432211 11223444453 22
Q ss_pred EEEEEcCCCC--hhhhhh--ccCCCCC-CCCCeEEEEEeCch
Q 000447 241 ILVILDDIWT--SLDLER--TGIPFGD-VHRGCKILVTSRRR 277 (1497)
Q Consensus 241 ~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~ilvTTR~~ 277 (1497)
=||||||+.. ..+|.. +..-+.. ...|..+||||...
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999943 334432 2211111 12455689998643
No 207
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.59 E-value=0.00017 Score=68.97 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=45.3
Q ss_pred CCCccEEEecCccCccCCccCCCC-CCCCEEeccCCCCCCC-cccCCCCCCcEEEeecCCCcccchhhcCCCccCEEecc
Q 000447 534 MPKLRVLVLTRMKLLTLPSSFCHL-PNLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611 (1497)
Q Consensus 534 l~~Lr~L~L~~~~i~~lp~~i~~L-~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls 611 (1497)
..+|...+|++|.+..+|..|... +-+..|+|.+|.|+++ ..+..++.|+.|+++.|.+...|+-|..|.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 334444444555444444443322 2444455555555444 33555555555555556666666666666666666665
Q ss_pred CCCCCCCcChh
Q 000447 612 NCSKLKVIPPN 622 (1497)
Q Consensus 612 ~~~~l~~lp~~ 622 (1497)
++. ...+|-.
T Consensus 132 ~na-~~eid~d 141 (177)
T KOG4579|consen 132 ENA-RAEIDVD 141 (177)
T ss_pred CCc-cccCcHH
Confidence 554 4445443
No 208
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.067 Score=64.83 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=50.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
..+|+|+|++|+||||++..++.....+.....+..++... .....+.++...+.++................+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 47899999999999999999998765332223455555422 222233344444444443332223333444444443
Q ss_pred CeEEEEEcCCC
Q 000447 239 KKILVILDDIW 249 (1497)
Q Consensus 239 k~~LlVlDdv~ 249 (1497)
+.-+||+|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 45588889864
No 209
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.57 E-value=0.0035 Score=64.51 Aligned_cols=103 Identities=28% Similarity=0.347 Sum_probs=53.0
Q ss_pred CCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccchhhcC-CCccCEEeccCCCCCCC---cChhhhcCCCCCCEEEe
Q 000447 560 LESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGE-LTQLKLLDLSNCSKLKV---IPPNVISSLSQLEELYL 635 (1497)
Q Consensus 560 Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~-L~~L~~L~Ls~~~~l~~---lp~~~l~~L~~L~~L~l 635 (1497)
...+||++|.+..+..+..+..|.+|.+++|+|+.+-..+.. +.+|+.|.|.+|+ +.+ +.+ +..++.|++|.+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccceeee
Confidence 344555555555555555555555566655555555444433 3446666665554 322 222 445566666666
Q ss_pred cCCcccccccccccccCccChhhcCCCCCCcEEEeecc
Q 000447 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIR 673 (1497)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 673 (1497)
-+|.+.. ......-.+.++++|+.|+....
T Consensus 121 l~Npv~~--------k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEH--------KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhc--------ccCceeEEEEecCcceEeehhhh
Confidence 5554431 11122234556667777766543
No 210
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.55 E-value=0.029 Score=73.78 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=97.8
Q ss_pred CcccccchHHHHHHHHHHHc-------------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000447 137 GHEFIESRESILNDILDALR-------------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1497)
....+.|.+..++++.+.+. -...+-+.++|++|+|||++|+++++... ..| +.+...
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~~-- 521 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRGP-- 521 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEehH--
Confidence 34456677777666666543 12334588999999999999999999864 223 222211
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh--------------hhhhccCCCCC--CCCC
Q 000447 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--------------DLERTGIPFGD--VHRG 267 (1497)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------------~~~~l~~~l~~--~~~g 267 (1497)
+ +.... ..+ ....+..+.....+..+.+|++|+++... ....+...+.. ...+
T Consensus 522 --~----l~~~~----vGe-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 --E----ILSKW----VGE-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred --H----Hhhcc----cCc-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1 11111 111 22344555555555678999999986431 01111111211 1234
Q ss_pred eEEEEEeCchhhhhhcC----cccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCCh
Q 000447 268 CKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 268 s~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1497)
--||.||...+..+.++ .....+.++..+.++-.++|+.+........+. -...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 45666776655444322 234678888889999999998776432211111 1346777777754
No 211
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.54 E-value=0.0046 Score=66.02 Aligned_cols=128 Identities=25% Similarity=0.234 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC----Cc-----CH----HHHHHH
Q 000447 144 RESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ----TP-----DL----KRIRRE 210 (1497)
Q Consensus 144 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~-----~~----~~~~~~ 210 (1497)
+..+-...++.|. ...++.+.|++|.|||.||.+.+-+.-....|+.++++.-.- .. +. .....-
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 3344455566665 456899999999999999999997765568888888763211 11 00 011111
Q ss_pred HHHHhCCCCCCCChHHHHHHH------HHHHhcC---CeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCch
Q 000447 211 IADQLGLNFCEESDSERIMML------CNRLKRE---KKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR 277 (1497)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l------~~~l~~~---k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~ 277 (1497)
+...+..-..........+.- ...+ ++ ++..||+|++.+. .++..+.. ..+.|||||++--..
T Consensus 83 ~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-RGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD~~ 156 (205)
T PF02562_consen 83 IYDALEELFGKEKLEELIQNGKIEIEPLAFI-RGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-TT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE---
T ss_pred HHHHHHHHhChHhHHHHhhcCeEEEEehhhh-cCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecCce
Confidence 222222211111111111000 0011 23 4578999999776 46666543 456899999986443
No 212
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.52 E-value=0.045 Score=63.22 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHHcC----CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000447 143 SRESILNDILDALRG----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 143 gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1497)
+|...++...+++.. ...+-+.++|..|+|||.||.++++.... ..+ .+.++.++ +++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KGV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 455555555666552 23467999999999999999999999862 333 34555543 4555555544211
Q ss_pred CCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh--hhhhh--ccCCC-CCC-CCCeEEEEEeC
Q 000447 219 FCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLER--TGIPF-GDV-HRGCKILVTSR 275 (1497)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~ilvTTR 275 (1497)
+ .....+.+ .+-=||||||+..+ .+|.. +...+ ... ..+-.+|+||-
T Consensus 207 ----~----~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ----S----VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ----c----HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 22334444 36679999998644 35642 32222 111 23445777875
No 213
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.50 E-value=0.068 Score=60.73 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHH
Q 000447 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1497)
Q Consensus 146 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (1497)
+.++++..++..+ +-|.+.|++|+|||++|+.+++.. . ...+.++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l--g---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR--D---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh--C---CCEEEEeCCccCCHHHHh
Confidence 4455666665543 246689999999999999999744 1 124456666655555544
No 214
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.50 E-value=0.0057 Score=63.91 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=65.9
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
+.....++|-++.++++--.-.+.+.+-+.|.||+|+||||-+..+++..--...-+.+.=.+.|....+.-+...|-.-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~F 102 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMF 102 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHH
Confidence 34456788999988888777778889999999999999999999999876422222444444444444333333222111
Q ss_pred hCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 215 LGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
... .-.+-.++.-.+|||+.++.
T Consensus 103 AQ~--------------kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 103 AQK--------------KVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHh--------------hccCCCCceeEEEeeccchh
Confidence 000 00111267778999999876
No 215
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.09 Score=61.36 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=64.6
Q ss_pred HHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEe-CchhhhhhcCcccceEEecCCCHH
Q 000447 226 ERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLVSEMHCQNNYCVSVLNKE 298 (1497)
Q Consensus 226 ~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v~~~~~~~~~~~~l~~L~~~ 298 (1497)
+.+..+.+.+. .+++-++|+|+++.. ..+..+...+....+++.+|.+| +...+..........+.+.+++.+
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~ 194 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPE 194 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHH
Confidence 44445555443 256678899998765 34555555554444566555555 445555433344578999999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000447 299 EAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1497)
Q Consensus 299 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 338 (1497)
+..+.+... |. . + ...++..++|.|..+..+
T Consensus 195 ~~~~~L~~~-~~---~-~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 195 AAAAWLAAQ-GV---A-D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHc-CC---C-h----HHHHHHHcCCCHHHHHHH
Confidence 999998775 21 1 1 123577889999755433
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.061 Score=62.95 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=99.2
Q ss_pred HHHHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCC-------C
Q 000447 147 ILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL-------N 218 (1497)
Q Consensus 147 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-------~ 218 (1497)
..+++...+..++ ...+.++|+.|+||+++|..++...--...-+. ..++....-+.+...-.. .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEEecc
Confidence 4566777776554 457889999999999999999987632111100 000000011111000000 0
Q ss_pred CC-CCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCc-hhhhhhcCcccceE
Q 000447 219 FC-EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEMHCQNNY 290 (1497)
Q Consensus 219 ~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~~~~~~~~ 290 (1497)
.. ..-..+.+..+.+.+. .+++-++|+|+++.. ..-..+...+.....++.+|.+|.+ ..+..........+
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 00 0112333444444433 367789999998765 3344444444433456666666655 44554323445678
Q ss_pred EecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 291 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
.+.+++.+++.+.+....+ .+ .+.+..+++.++|.|..+.
T Consensus 163 ~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 163 YLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHHH
Confidence 9999999999988866432 11 2236678999999996443
No 217
>PRK07261 topology modulation protein; Provisional
Probab=96.42 E-value=0.0072 Score=63.69 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=26.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc-CCcceEEEE
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVFA 196 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 196 (1497)
.|.|+|++|+||||||+++....... -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 48999999999999999998775321 234566663
No 218
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.073 Score=67.42 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHHHc---------CCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 139 EFIESRESILNDILDALR---------GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
..++|.++.++.+.+.+. ...+.+...+|+.|+|||.||++++...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence 357899999999998876 2356788999999999999999999876
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.36 E-value=0.016 Score=62.31 Aligned_cols=86 Identities=22% Similarity=0.277 Sum_probs=57.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec-CCcCHHHHHHHHHHHhCCCCC----CCChHHHHHHHHHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS-QTPDLKRIRREIADQLGLNFC----EESDSERIMMLCNRL 235 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l 235 (1497)
+||.+||+.|+||||.+.+++...+.+ -..+..++.. ......+-++..++.++.+.. ..+..+...+..+.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999999999999988744 3456667664 334567778888888886532 223444444445555
Q ss_pred hcCCeEEEEEcCC
Q 000447 236 KREKKILVILDDI 248 (1497)
Q Consensus 236 ~~~k~~LlVlDdv 248 (1497)
..++.=+|++|-.
T Consensus 80 ~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 80 RKKGYDLVLIDTA 92 (196)
T ss_dssp HHTTSSEEEEEE-
T ss_pred hhcCCCEEEEecC
Confidence 4334457888865
No 220
>PHA00729 NTP-binding motif containing protein
Probab=96.32 E-value=0.019 Score=62.12 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 150 DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 150 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
++++.+...+..-|.|+|.+|+||||||..++++.
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555555566689999999999999999999875
No 221
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.32 E-value=0.11 Score=63.50 Aligned_cols=199 Identities=20% Similarity=0.190 Sum_probs=117.8
Q ss_pred cccccchHHHHHHHHHHHc----C-CCeEEEEEEcCCCchHHHHHHHHHHHHh------ccCCcceEEEEEecCCcCHHH
Q 000447 138 HEFIESRESILNDILDALR----G-PYVYMIGVYGMAGIGKTTLVKEVARLAK------EGRIFDEVVFAEVSQTPDLKR 206 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~ 206 (1497)
+..+.+|+.+..+|-+.+. + ..-+.+-|.|-+|+|||..+..|.+... .-..|+ .+.|+...-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 4556789999999888776 3 3445999999999999999999998543 122343 23455555567999
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCChhh--hhhccCCCC-CCCCCeEEEEEeCch--
Q 000447 207 IRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSLD--LERTGIPFG-DVHRGCKILVTSRRR-- 277 (1497)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~ilvTTR~~-- 277 (1497)
+...|..++.+.... .....+.+..++. ..+..+|++|+++..-. -+-+...|. ...++||++|-+=..
T Consensus 474 ~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 999999999765332 2233444555554 24668999998765421 111111222 244678776654211
Q ss_pred hhhhhc-------CcccceEEecCCCHHHHHHHHHHHhCC--CCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000447 278 DVLVSE-------MHCQNNYCVSVLNKEEAWSLFSKVVGN--CVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1497)
Q Consensus 278 ~v~~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~glPLai~~~~ 339 (1497)
+...+. .-....+.+.+.+.++-.++...+..+ .......+-++++|+.--|-.-.|+.+.-
T Consensus 552 dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 111110 011345777778877777777666532 22333444455555555555444444433
No 222
>PRK08181 transposase; Validated
Probab=96.31 E-value=0.0058 Score=68.77 Aligned_cols=105 Identities=19% Similarity=0.111 Sum_probs=58.1
Q ss_pred HHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHH
Q 000447 153 DALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLC 232 (1497)
Q Consensus 153 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 232 (1497)
+|+.. ..-+.++|++|+|||.||..+++....+ .-.+++++ ..+++..+..... +. ......
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~~----~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----EL----QLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----CC----cHHHHH
Confidence 46542 3459999999999999999999877522 23445554 3445555543321 11 112233
Q ss_pred HHHhcCCeEEEEEcCCCCh--hhh-h-hccCCCCCCCCCeEEEEEeCch
Q 000447 233 NRLKREKKILVILDDIWTS--LDL-E-RTGIPFGDVHRGCKILVTSRRR 277 (1497)
Q Consensus 233 ~~l~~~k~~LlVlDdv~~~--~~~-~-~l~~~l~~~~~gs~ilvTTR~~ 277 (1497)
+.+. +.-|||+||+... .+| . .+...+.....+..+||||...
T Consensus 163 ~~l~--~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKLD--KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHh--cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4442 5569999998544 122 1 1222121111123588888754
No 223
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.24 E-value=0.035 Score=72.98 Aligned_cols=175 Identities=18% Similarity=0.182 Sum_probs=94.9
Q ss_pred CcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000447 137 GHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1497)
....+.|.++.++++.+++. . ...+-+.++|++|+|||++|+.+++... ..| +.++..
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~-----i~i~~~-- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF-----ISINGP-- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE-----EEEecH--
Confidence 34557799988888877653 1 2345688999999999999999998763 222 222211
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh-------------hhhhccCCCCC-CCCCeE
Q 000447 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-------------DLERTGIPFGD-VHRGCK 269 (1497)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~l~~-~~~gs~ 269 (1497)
++. ... .. .....+..+.+......+.+|++||++... ....+...+.. ...+..
T Consensus 247 --~i~----~~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 --EIM----SKY----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred --HHh----ccc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 111 000 00 112233444444444677899999985431 01112111111 122333
Q ss_pred EEE-EeCchhhhhhcC---c-ccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChH
Q 000447 270 ILV-TSRRRDVLVSEM---H-CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1497)
Q Consensus 270 ilv-TTR~~~v~~~~~---~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 333 (1497)
++| ||....-.+..+ + -...+.+...+.++-.++++.+........+ .....+++.++|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCH
Confidence 444 444332211111 1 2346778888888888888866543221111 124578888888653
No 224
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.22 E-value=0.0088 Score=65.41 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=29.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 198 (1497)
.++|+|..|.||||++..+..... +.|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 688999999999999999998764 67888887754
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.17 E-value=0.0063 Score=70.27 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=40.7
Q ss_pred cccchHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.++|.++.++++++++. +.+.+++.++|++|+||||||+.+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 68899999999999987 23468999999999999999999999875
No 226
>PRK06526 transposase; Provisional
Probab=96.15 E-value=0.0073 Score=67.66 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=43.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1497)
..-+.|+|++|+|||+||..+++....+ .+. +.|+ +..++...+..... .. ........+ .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~-v~f~------t~~~l~~~l~~~~~----~~----~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GHR-VLFA------TAAQWVARLAAAHH----AG----RLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CCc-hhhh------hHHHHHHHHHHHHh----cC----cHHHHHHHh--cc
Confidence 3468999999999999999999876532 232 3333 23344444433211 11 111222233 34
Q ss_pred eEEEEEcCCCCh
Q 000447 240 KILVILDDIWTS 251 (1497)
Q Consensus 240 ~~LlVlDdv~~~ 251 (1497)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 568999999654
No 227
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.046 Score=66.63 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=62.8
Q ss_pred cccccchHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000447 138 HEFIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1497)
...-+|.++.+++|++.+. ..+-++++.+|++|+|||.+|+.++...- +.| +-++|+.-.|+.+|-.-=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhcccc
Confidence 3445799999999999876 34567999999999999999999998774 333 234566555554432110
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHhc--CCeEEEEEcCCCCh
Q 000447 212 ADQLGLNFCEESDSERIMMLCNRLKR--EKKILVILDDIWTS 251 (1497)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~ 251 (1497)
-..+ ..-. .++.+.|++ ..+=|+.+|+|+..
T Consensus 485 RTYV-----GAMP----GkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 485 RTYV-----GAMP----GKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred eeee-----ccCC----hHHHHHHHhhCCCCceEEeehhhhh
Confidence 0000 0011 123333332 35668889998654
No 228
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.10 E-value=0.02 Score=62.84 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=38.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1497)
.-.++.|+|++|+|||++|.+++.... ..-..++|++... ++..++.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHHH
Confidence 357999999999999999999988764 2246789999876 666555543
No 229
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.10 E-value=0.0042 Score=65.68 Aligned_cols=75 Identities=29% Similarity=0.351 Sum_probs=45.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
+..-+.++|..|+|||.||..+++.... ..+ .+.|+++ .+++..+-. ...... ...+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~-~v~f~~~------~~L~~~l~~----~~~~~~----~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGY-SVLFITA------SDLLDELKQ----SRSDGS----YEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEH------HHHHHHHHC----CHCCTT----HCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc-ceeEeec------Cceeccccc----cccccc----hhhhcCccc--
Confidence 3456999999999999999999988753 233 3556653 344444432 211111 123344553
Q ss_pred CeEEEEEcCCCCh
Q 000447 239 KKILVILDDIWTS 251 (1497)
Q Consensus 239 k~~LlVlDdv~~~ 251 (1497)
+-=||||||+...
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 4568889998655
No 230
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.02 E-value=0.023 Score=71.20 Aligned_cols=48 Identities=29% Similarity=0.384 Sum_probs=39.2
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
....++|++..++.+...+......-+.|+|++|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 355688999998888887765555567899999999999999998754
No 231
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.01 E-value=0.038 Score=62.26 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=42.1
Q ss_pred cccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHH-HHhccCCcceEE
Q 000447 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVAR-LAKEGRIFDEVV 194 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~-~~~~~~~F~~~~ 194 (1497)
++-+|..+-.--+++|.++++..|.+.|.+|.|||-||-+..= ..-+++.|+.++
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 4456777777778889999999999999999999999987653 333455666544
No 232
>PRK12377 putative replication protein; Provisional
Probab=96.00 E-value=0.029 Score=62.36 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=48.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
+...+.++|.+|+|||+||.++++....+ ...++++++. +++..+-...... . ....+.+.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~---~----~~~~~l~~l--~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG---Q----SGEKFLQEL--C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc---c----hHHHHHHHh--c
Confidence 34679999999999999999999988632 3345666543 4555554433211 1 112344444 3
Q ss_pred CeEEEEEcCCCCh
Q 000447 239 KKILVILDDIWTS 251 (1497)
Q Consensus 239 k~~LlVlDdv~~~ 251 (1497)
+--||||||+...
T Consensus 163 ~~dLLiIDDlg~~ 175 (248)
T PRK12377 163 KVDLLVLDEIGIQ 175 (248)
T ss_pred CCCEEEEcCCCCC
Confidence 6779999999443
No 233
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.97 E-value=0.021 Score=64.09 Aligned_cols=91 Identities=23% Similarity=0.250 Sum_probs=55.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------CC-
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------ES- 223 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~- 223 (1497)
.-.++.|+|.+|+|||++|.+++........ -..++|++....++.+++.+ +++..+..... .+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 3469999999999999999999865432221 25789999888777655443 33333321100 01
Q ss_pred --hHHHHHHHHHHHhcC-CeEEEEEcCCCC
Q 000447 224 --DSERIMMLCNRLKRE-KKILVILDDIWT 250 (1497)
Q Consensus 224 --~~~~~~~l~~~l~~~-k~~LlVlDdv~~ 250 (1497)
..+....+.+.+.+. +.-+||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 112233344444444 677888888753
No 234
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.97 E-value=0.3 Score=58.56 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 198 (1497)
+..+|.++|+.|+||||.|..++...+.+ .+ .++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcC
Confidence 46799999999999999999999877632 23 3444443
No 235
>PRK04132 replication factor C small subunit; Provisional
Probab=95.96 E-value=0.11 Score=67.42 Aligned_cols=154 Identities=10% Similarity=0.018 Sum_probs=92.4
Q ss_pred c--CCCchHHHHHHHHHHHHhccCCc-ceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEE
Q 000447 167 G--MAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILV 243 (1497)
Q Consensus 167 G--~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~Ll 243 (1497)
| |.|+||||+|..++++.-- +.+ ..++-++.+...++..+. +++..+....+ +...+.-++
T Consensus 571 G~lPh~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KVv 634 (846)
T PRK04132 571 GNLPTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKII 634 (846)
T ss_pred CCCCCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEEE
Confidence 7 8899999999999988621 122 235566777655554433 33332211101 001245799
Q ss_pred EEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCch-hhhhhcCcccceEEecCCCHHHHHHHHHHHhCCCCCCchHHHH
Q 000447 244 ILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTV 320 (1497)
Q Consensus 244 VlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~ 320 (1497)
|+|+++.. .....+...+......+++|.+|.+. .+..........+.+.+++.++-...+.+.+......- .++.
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-~~e~ 713 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEG 713 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC-CHHH
Confidence 99999876 34555544444333456666655544 44332233466899999999999888887664221111 1346
Q ss_pred HHHHHHHhCCChHHHHH
Q 000447 321 AIQVANECGGLPIAILT 337 (1497)
Q Consensus 321 ~~~i~~~c~glPLai~~ 337 (1497)
...|++.++|-+..+..
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 78999999998754443
No 236
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.023 Score=66.60 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=58.9
Q ss_pred ccchHHHHHHHHHHHcCC--------C-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000447 141 IESRESILNDILDALRGP--------Y-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1497)
Q Consensus 141 ~~gR~~~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1497)
+..-..|++++++.|.+. + .+=|.++|++|.|||-||++++-...+- | |......|+. +
T Consensus 309 ~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdE------m 376 (752)
T KOG0734|consen 309 VDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDE------M 376 (752)
T ss_pred hHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhh------h
Confidence 334456788999999852 2 3568999999999999999999877532 2 2222222321 1
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
.-.. -...+..+....+..-+++|.+|+++..
T Consensus 377 ~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 377 FVGV--------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred hhcc--------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1111 1234555666666678899999998654
No 237
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.056 Score=64.02 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=81.1
Q ss_pred ccchHHHHHHHHHHHc-CCCeE-EEEEEcCCCchHHHHHHHHHHHHhccC-------------------CcceEEEEEec
Q 000447 141 IESRESILNDILDALR-GPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFAEVS 199 (1497)
Q Consensus 141 ~~gR~~~~~~l~~~L~-~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 199 (1497)
+++.+....++..+.. ..+.+ .+.++|+.|+||||+|..+++..--.. ..+.+..++-+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566677777777776 33444 499999999999999999999874221 11334444444
Q ss_pred CCcC---HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh--hhhhccCCCCCCCCCeEEEEEe
Q 000447 200 QTPD---LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTS 274 (1497)
Q Consensus 200 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTT 274 (1497)
.... ..+..+++.+....... .++.-++|+|+++... .-..+...+......+++|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4433 34444444444432211 2577899999997762 2333333333344567777777
Q ss_pred Cch-hhhhhcCcccceEEecC
Q 000447 275 RRR-DVLVSEMHCQNNYCVSV 294 (1497)
Q Consensus 275 R~~-~v~~~~~~~~~~~~l~~ 294 (1497)
... .+..........+++.+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CChhhccchhhhcceeeecCC
Confidence 633 33331223344666666
No 238
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.94 E-value=0.053 Score=62.13 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=51.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1497)
+.++++|+|++|+||||++..++.....+..-..+..|+.... ....+.+....+.++...........+....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 3569999999999999999999987753311124555654321 12344444455555554433223333444444443
Q ss_pred CCeEEEEEcCC
Q 000447 238 EKKILVILDDI 248 (1497)
Q Consensus 238 ~k~~LlVlDdv 248 (1497)
+.-+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 3457777754
No 239
>PRK06921 hypothetical protein; Provisional
Probab=95.89 E-value=0.015 Score=65.90 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=44.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
....+.++|..|+|||+||.++++....+.. ..+++++. .+++..+.... +......+.+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g-~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~--~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKG-VPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRM--K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcC-ceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHh--c
Confidence 4567999999999999999999998753212 34566654 23333332221 1112233334 2
Q ss_pred CeEEEEEcCC
Q 000447 239 KKILVILDDI 248 (1497)
Q Consensus 239 k~~LlVlDdv 248 (1497)
+--||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 5569999999
No 240
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.00052 Score=73.40 Aligned_cols=106 Identities=28% Similarity=0.367 Sum_probs=76.7
Q ss_pred CCCCCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccchhhcCCCccCEEeccCCCCCCCcCh-hhhcCCCCCCEEEe
Q 000447 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPP-NVISSLSQLEELYL 635 (1497)
Q Consensus 557 L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~-~~l~~L~~L~~L~l 635 (1497)
|.+.+.|++-||.+.+|+.+.++..|++|.||-|+|+.|- .+..+++|+.|+|..|. +..+.+ ..+.++++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 4566778888888888888888889999999988888874 47788889999988876 655543 12568888899988
Q ss_pred cCCcccccccccccccCccChhhcCCCCCCcEEEe
Q 000447 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEI 670 (1497)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 670 (1497)
..|...+... .......|.-|+||++|+-
T Consensus 96 ~ENPCc~~ag------~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGEAG------QNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccccc------hhHHHHHHHHcccchhccC
Confidence 8876542211 1223456677788887763
No 241
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.88 E-value=0.29 Score=59.24 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=51.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCC----CChHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCE----ESDSERIMMLCN 233 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 233 (1497)
+..+|.++|.+|+||||.|..++...+.+ .+ .+.-|+... .....+.++.++++++..... ......+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45799999999999999999999887633 33 334444432 223355566677776654322 112222333344
Q ss_pred HHhcCCeEEEEEcCCC
Q 000447 234 RLKREKKILVILDDIW 249 (1497)
Q Consensus 234 ~l~~~k~~LlVlDdv~ 249 (1497)
.+. +. -+||+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 443 23 568888763
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.038 Score=62.01 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=51.6
Q ss_pred HHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHH
Q 000447 151 ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMM 230 (1497)
Q Consensus 151 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 230 (1497)
+.+++. +..-+.++|.+|+|||.||.++.++.. +..+. +.+++ ..++..++....... . ...+
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~------~~el~~~Lk~~~~~~----~---~~~~ 160 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFIT------APDLLSKLKAAFDEG----R---LEEK 160 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEEE------HHHHHHHHHHHHhcC----c---hHHH
Confidence 344444 556799999999999999999999987 44343 44443 345666665554321 1 1122
Q ss_pred HHHHHhcCCeEEEEEcCCCCh
Q 000447 231 LCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 231 l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
+.+.+ .+-=||||||+...
T Consensus 161 l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 161 LLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHh--hcCCEEEEecccCc
Confidence 33333 24559999998654
No 243
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.82 E-value=0.03 Score=74.51 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=60.2
Q ss_pred ccccchHHHHHHHHHHHcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000447 139 EFIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1497)
..++|.+..++.+.+.+.. ....++.++|+.|+|||++|+.++..... .-...+-++.+.-.+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~--~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD--DEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhhcccchH--
Confidence 4578999999998888762 12467889999999999999999987531 1123344444432221111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
.+-++.. +..-..+....+.+.+.+....+|+||++...
T Consensus 641 --~~l~g~~-~g~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 --ARLIGAP-PGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHhcCCC-CCccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 1111111 11000001122334444344558999999765
No 244
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.81 E-value=0.0076 Score=59.55 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
||+|+|++|+||||+|+.++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 245
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.032 Score=65.56 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=55.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
-.+++++|+.|+||||++.+++.....+.....+..++... .....+-++...+.++..................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 46899999999999999999998864222223455555432 234566677777777765433222222333344443
Q ss_pred CeEEEEEcCCCCh
Q 000447 239 KKILVILDDIWTS 251 (1497)
Q Consensus 239 k~~LlVlDdv~~~ 251 (1497)
++-+|++|.....
T Consensus 215 ~~DlVLIDTaG~~ 227 (374)
T PRK14722 215 NKHMVLIDTIGMS 227 (374)
T ss_pred CCCEEEEcCCCCC
Confidence 4466779987433
No 246
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.77 E-value=0.024 Score=73.21 Aligned_cols=103 Identities=14% Similarity=0.205 Sum_probs=59.3
Q ss_pred ccccchHHHHHHHHHHHcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000447 139 EFIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1497)
..++|.++.++.+.+.+.. .....+.++|+.|+|||++|+.++.... . ..+.++.+.-.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhcccc----
Confidence 3467888888888887761 2345789999999999999999988763 2 23344444322211
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
.+.+-++.. +.....+....+.+.+.+....+|+||+++..
T Consensus 529 ~~~~LiG~~-~gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 529 TVSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred cHHHHcCCC-CCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 111112211 11000011112333344445679999999776
No 247
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.76 E-value=0.035 Score=73.61 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHHc-------C--CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 139 EFIESRESILNDILDALR-------G--PYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
..++|.++.++.+.+.+. + .....+.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 557799999999888775 1 124567899999999999999999875
No 248
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.29 Score=60.62 Aligned_cols=97 Identities=23% Similarity=0.316 Sum_probs=66.8
Q ss_pred CCCcccccchHHHHHHHHHHHc---------CC---CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc
Q 000447 135 NEGHEFIESRESILNDILDALR---------GP---YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP 202 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 202 (1497)
...-..+.|-++.+.+|.+-+. .. +..=|.++|++|.|||-+|++|+..... .|++|-..
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP- 739 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP- 739 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH-
Confidence 3345567788888888888664 12 2457899999999999999999988742 24444332
Q ss_pred CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 203 DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
+++..- +| ..++.+.++.++.++.+++.|.+|++++.
T Consensus 740 ---ELLNMY---VG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ---ELLNMY---VG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ---HHHHHH---hc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 122111 11 23456677777887789999999998765
No 249
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.15 Score=55.71 Aligned_cols=171 Identities=20% Similarity=0.219 Sum_probs=92.9
Q ss_pred ccccchHHHHHHHHHHHc----------C--CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHH
Q 000447 139 EFIESRESILNDILDALR----------G--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKR 206 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 206 (1497)
..+.|-+..++.|-+... . ..-+-|.++|++|.||+-||++|+.... .-|.+||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehH----H
Confidence 344555555555555432 2 2357899999999999999999998763 123444433 1
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh---------hhhhhccCCC-------CCCCCCeEE
Q 000447 207 IRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS---------LDLERTGIPF-------GDVHRGCKI 270 (1497)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~---------~~~~~l~~~l-------~~~~~gs~i 270 (1497)
+..+.+ + ..+..+..+.+-.+++|+-+|.+|+|+.. +.-..|...| .....|.-|
T Consensus 202 LvSKWm----G-----ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 202 LVSKWM----G-----ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HHHHHh----c-----cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 221111 1 12334555666666789999999998654 1111111111 123345556
Q ss_pred EEEeCchhhhhhcCc--ccceEEecCCCHHHHH-HHHHHHhCCCCCCchHHHHHHHHHHHhCCC
Q 000447 271 LVTSRRRDVLVSEMH--CQNNYCVSVLNKEEAW-SLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1497)
Q Consensus 271 lvTTR~~~v~~~~~~--~~~~~~l~~L~~~e~~-~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 331 (1497)
+-.|...-+.+.++. -.+.|-+ ||.+..|. .+|+-++|+.... -.++--++++++..|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~-LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHV-LTEQDFKELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccc-cchhhHHHHHhhcCCC
Confidence 667777766665221 1223322 45555554 5677777754322 1122344566666553
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.68 E-value=0.0054 Score=66.18 Aligned_cols=82 Identities=28% Similarity=0.325 Sum_probs=41.2
Q ss_pred CCCCCEEeccCCCCCCCcccCCCCCCcEEEeecC--CCc-ccchhhcCCCccCEEeccCCCCCC---CcChhhhcCCCCC
Q 000447 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS--DIE-QLPREIGELTQLKLLDLSNCSKLK---VIPPNVISSLSQL 630 (1497)
Q Consensus 557 L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~--~l~-~LP~~i~~L~~L~~L~Ls~~~~l~---~lp~~~l~~L~~L 630 (1497)
+..|+.|++.++.++.+..+-.|++|++|.++.| .+. .++.-..++++|++|++++|+ ++ .+++ +.++.+|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP--LKELENL 118 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch--hhhhcch
Confidence 3444445555555555555555556666666555 222 344344444666666666654 22 2222 3455555
Q ss_pred CEEEecCCccc
Q 000447 631 EELYLGNTSVE 641 (1497)
Q Consensus 631 ~~L~l~~~~~~ 641 (1497)
..|++.+|...
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 55665555443
No 251
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.082 Score=61.60 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=51.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1497)
+.++|+++|++|+||||++..++.....+ .+ .+..++.... ....+-++...+.++...........+....+.+.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999999877522 22 3444554321 223333444455555443322233333344444442
Q ss_pred C-CeEEEEEcCCCC
Q 000447 238 E-KKILVILDDIWT 250 (1497)
Q Consensus 238 ~-k~~LlVlDdv~~ 250 (1497)
. +.=+|++|-...
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 235778886643
No 252
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.59 E-value=0.046 Score=62.86 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=54.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLC 232 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (1497)
+-+++-|+|++|+||||||.+++...... -..++||+..+.++.. .+++++.+.+ .....+....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999999988776422 3567899887766653 3455554311 122233333333
Q ss_pred HHHhcCCeEEEEEcCCCC
Q 000447 233 NRLKREKKILVILDDIWT 250 (1497)
Q Consensus 233 ~~l~~~k~~LlVlDdv~~ 250 (1497)
....++..-+||+|.|..
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 333345677999999753
No 253
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.19 Score=58.57 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=78.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC---------------------CcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGR---------------------IFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1497)
...+.++|+.|+||||+|+.++...--.. |-| ..++.-..... .-+ .
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~----------~~g-~ 88 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEP----------ENG-R 88 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEecccccc----------ccc-c
Confidence 45788999999999999999998753111 111 11111100000 000 0
Q ss_pred CCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCChh--hhhhccCCCCCCCCCeEEEEEeCchh-hhhhcCcccceEE
Q 000447 219 FCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRRD-VLVSEMHCQNNYC 291 (1497)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~~-v~~~~~~~~~~~~ 291 (1497)
....-..+.+..+.+.+. .+++-++|+|++...+ .-..+...+.....++.+|++|.+.. +..........+.
T Consensus 89 ~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~ 168 (325)
T PRK08699 89 KLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMV 168 (325)
T ss_pred cCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhc
Confidence 000012233334444443 1455566678776552 12222222221123455666776653 4432233456889
Q ss_pred ecCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHH
Q 000447 292 VSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1497)
Q Consensus 292 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 334 (1497)
+.+++.+++.+.+.+. |. ... . ..+..++|-|+.
T Consensus 169 ~~~~~~~~~~~~L~~~-~~---~~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 169 LPAPSHEEALAYLRER-GV---AEP-E----ERLAFHSGAPLF 202 (325)
T ss_pred CCCCCHHHHHHHHHhc-CC---CcH-H----HHHHHhCCChhh
Confidence 9999999999888654 21 111 1 123568898854
No 254
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.58 E-value=0.065 Score=66.17 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=42.0
Q ss_pred cccchHHHHHHHHHHHcC-----CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe
Q 000447 140 FIESRESILNDILDALRG-----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 198 (1497)
++.--.+.++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+-|.+-
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 344445667888888872 3467999999999999999999998864 777778643
No 255
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.55 E-value=0.081 Score=59.59 Aligned_cols=89 Identities=26% Similarity=0.306 Sum_probs=54.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------CCh--
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------ESD-- 224 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~-- 224 (1497)
.++=|+|.+|+|||+||.+++-...... .=..++|++-...++.+++.+ |+++.+.+..+ .+.
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-HhhccccccchhhhceeeeecCCHHH
Confidence 4899999999999999999886643221 124689999999999887764 55554432110 011
Q ss_pred -HHHHHHHHHHHhcCCeEEEEEcCCCC
Q 000447 225 -SERIMMLCNRLKREKKILVILDDIWT 250 (1497)
Q Consensus 225 -~~~~~~l~~~l~~~k~~LlVlDdv~~ 250 (1497)
...+..+...+.+++=-|||+|.+-.
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHhhccccceEEEEecchHH
Confidence 11222233333335566888888743
No 256
>PRK09183 transposase/IS protein; Provisional
Probab=95.55 E-value=0.016 Score=65.44 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
..+.|+|++|+|||+||..+++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999988754
No 257
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.54 E-value=0.043 Score=56.28 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=70.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE---ec------------------CCc---------------
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE---VS------------------QTP--------------- 202 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs------------------~~~--------------- 202 (1497)
+-..+.|+|+.|.||||+.+.+|...+.. .+.+|+. ++ |++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34689999999999999999999987643 3344431 11 000
Q ss_pred ------CHHHHHHHH---HHHhCCC-----CCCC--ChHHHHHHHHHHHhcCCeEEEEEcC----CCChhhhhhccCCCC
Q 000447 203 ------DLKRIRREI---ADQLGLN-----FCEE--SDSERIMMLCNRLKREKKILVILDD----IWTSLDLERTGIPFG 262 (1497)
Q Consensus 203 ------~~~~~~~~i---~~~l~~~-----~~~~--~~~~~~~~l~~~l~~~k~~LlVlDd----v~~~~~~~~l~~~l~ 262 (1497)
...++.+.. ++..+.. .+.+ .-+.+-..+.+.+- +++-+|+=|+ ++....|+-+...-.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 122333322 2333322 1111 11122223444444 7888999885 555556665433323
Q ss_pred CCCCCeEEEEEeCchhhhhh
Q 000447 263 DVHRGCKILVTSRRRDVLVS 282 (1497)
Q Consensus 263 ~~~~gs~ilvTTR~~~v~~~ 282 (1497)
-+..|..||++|.+..+.+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 183 INRLGTTVLMATHDLELVNR 202 (223)
T ss_pred HhhcCcEEEEEeccHHHHHh
Confidence 35679999999999998874
No 258
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.52 E-value=0.023 Score=69.37 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=54.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
.-++..++|++|+||||||+.+++..- | .++=|+.|..-+...+-..|...+........ .+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------ds 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------DS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------CC
Confidence 457999999999999999999998753 3 35557888887777777777666543322110 25
Q ss_pred CeEEEEEcCCCCh
Q 000447 239 KKILVILDDIWTS 251 (1497)
Q Consensus 239 k~~LlVlDdv~~~ 251 (1497)
++.-||+|+++-.
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 8888999998765
No 259
>PRK10867 signal recognition particle protein; Provisional
Probab=95.48 E-value=0.64 Score=56.13 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
...+|.++|++|+||||.|..++...+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999988765
No 260
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.46 E-value=0.074 Score=59.06 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcC--CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCC
Q 000447 146 SILNDILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEES 223 (1497)
Q Consensus 146 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 223 (1497)
..+..+.+...+ .+...+.++|.+|+|||+||..+++....+ -..+++++ ..+++..+-.... . ...
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~-~-~~~- 151 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFS-N-SET- 151 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHh-h-ccc-
Confidence 344555554432 234578999999999999999999987533 23455553 3445555444332 1 111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 224 DSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 224 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
....+.+.+. +.=+||+||+...
T Consensus 152 ---~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 152 ---SEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ---cHHHHHHHhc--cCCEEEEeCCCCC
Confidence 1223444453 4558889998654
No 261
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.12 Score=61.90 Aligned_cols=151 Identities=21% Similarity=0.316 Sum_probs=88.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1497)
..=|.++|++|.|||-||++|+|... -+| ++|-.. +++... .| ..+..+..+..+.+...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag--~NF-----isVKGP----ELlNkY---VG------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG--ANF-----ISVKGP----ELLNKY---VG------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc--Cce-----EeecCH----HHHHHH---hh------hHHHHHHHHHHHhhcCC
Confidence 34588999999999999999999885 334 444332 111111 11 12334455666666689
Q ss_pred eEEEEEcCCCChh-------------hhhhccCCCCC--CCCCeEEEEEeCchhhhhhcC---cc-cceEEecCCCHHHH
Q 000447 240 KILVILDDIWTSL-------------DLERTGIPFGD--VHRGCKILVTSRRRDVLVSEM---HC-QNNYCVSVLNKEEA 300 (1497)
Q Consensus 240 ~~LlVlDdv~~~~-------------~~~~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~---~~-~~~~~l~~L~~~e~ 300 (1497)
+++|.||+++... ....+..-+.. ...|--||-.|-..++.+.++ |. ++..-++.-+.+|=
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999986541 12222222322 234666777776666655422 22 34566666678888
Q ss_pred HHHHHHHhCCCC----CCchHHHHHHHHHHHhCCCh
Q 000447 301 WSLFSKVVGNCV----EDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 301 ~~Lf~~~~~~~~----~~~~~~~~~~~i~~~c~glP 332 (1497)
.++++....+.. .+-+++++|+. .+|.|..
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 888888775322 23344444332 3565654
No 262
>PRK06696 uridine kinase; Validated
Probab=95.43 E-value=0.022 Score=63.14 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHc---CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 143 SRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 143 gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.|++.+++|.+.+. ..+..+|+|.|.+|+||||+|+.+++...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47777888888775 45678999999999999999999998875
No 263
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.40 E-value=0.022 Score=66.30 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=54.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
.-+.++|..|+|||+||..+++....+ . ..++++++. ++...+...-. . ... +. ....+.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~-g-~~V~y~t~~------~l~~~l~~~~~-~--~~~--~~-~~~~~~l~--~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR-G-KSVIYRTAD------ELIEILREIRF-N--NDK--EL-EEVYDLLI--NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC-C-CeEEEEEHH------HHHHHHHHHHh-c--cch--hH-HHHHHHhc--cC
Confidence 679999999999999999999987533 2 245666532 33333332111 1 000 11 11133332 34
Q ss_pred EEEEEcCCCCh--hhhh--hccCCCCC-CCCCeEEEEEeCc
Q 000447 241 ILVILDDIWTS--LDLE--RTGIPFGD-VHRGCKILVTSRR 276 (1497)
Q Consensus 241 ~LlVlDdv~~~--~~~~--~l~~~l~~-~~~gs~ilvTTR~ 276 (1497)
=||||||+... ..|. .+..-+.. ...+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 58999999554 2332 22221211 1224458888864
No 264
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.37 E-value=0.0068 Score=64.93 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=8.2
Q ss_pred cccccceeEEEEee
Q 000447 806 AEFFSKLRIIKVRN 819 (1497)
Q Consensus 806 ~~~~~~L~~L~L~~ 819 (1497)
.+.+|-|..|.+.+
T Consensus 299 ~~~~p~L~~le~ng 312 (388)
T COG5238 299 QDAVPLLVDLERNG 312 (388)
T ss_pred hcccHHHHHHHHcc
Confidence 34566666666654
No 265
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.35 E-value=0.0074 Score=65.12 Aligned_cols=56 Identities=38% Similarity=0.465 Sum_probs=24.5
Q ss_pred CCCCcEEEeecCCCcccc--hhhcCCCccCEEeccCCCCCC--CcChhhhcCCCCCCEEE
Q 000447 579 LKNLEILSLCCSDIEQLP--REIGELTQLKLLDLSNCSKLK--VIPPNVISSLSQLEELY 634 (1497)
Q Consensus 579 L~~L~~L~Ls~~~l~~LP--~~i~~L~~L~~L~Ls~~~~l~--~lp~~~l~~L~~L~~L~ 634 (1497)
+++|++|++++|+|+-+- .....+.+|..|++.+|.... .--..++.-+++|..|+
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 355555555555444210 123444555555665554221 11122344455555554
No 266
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.48 Score=50.46 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=54.9
Q ss_pred cccccchHHHHHHHHHHHc-------------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCH
Q 000447 138 HEFIESRESILNDILDALR-------------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1497)
...+.|-+-.++++.+... -+..+-|.++|++|.|||-||++|++.-. ..| +.|-..
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--a~f-----irvvgs--- 223 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAF-----IRVVGS--- 223 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--hhe-----eeeccH---
Confidence 3445566555555555433 14567788999999999999999998764 224 322211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
++.++ .+|.. ..-+..+.+-.+++.+.+|.+|+|+..
T Consensus 224 -efvqk---ylgeg------prmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 224 -EFVQK---YLGEG------PRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred -HHHHH---HhccC------cHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 11111 12211 122334444445578888899988654
No 267
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.32 E-value=0.059 Score=59.95 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=37.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~ 209 (1497)
.-.++.|+|.+|+|||++|.+++....... .=..++|++....++...+.+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 356999999999999999999987653221 015678999887777655543
No 268
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.32 E-value=0.064 Score=61.80 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=53.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLC 232 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (1497)
.-+++-|+|++|+||||||.+++..... .-..++||+....+++. .+++++.+.+ ..+..+....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 4568999999999999999998877642 23567899987777653 3444443211 112223333333
Q ss_pred HHHhcCCeEEEEEcCCC
Q 000447 233 NRLKREKKILVILDDIW 249 (1497)
Q Consensus 233 ~~l~~~k~~LlVlDdv~ 249 (1497)
....++.--+||+|.|.
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 33333566799999974
No 269
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.31 E-value=0.67 Score=54.79 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcC---CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 000447 145 ESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1497)
Q Consensus 145 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 187 (1497)
+...+.+.+.+.+ ....+|+|.|.=|+|||++.+.+.+..+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4455667777763 567899999999999999999999988644
No 270
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.26 E-value=0.095 Score=58.30 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 186 (1497)
.+..+++|.|+.|+|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999988763
No 271
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.25 E-value=0.059 Score=62.39 Aligned_cols=59 Identities=25% Similarity=0.323 Sum_probs=43.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc----CCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1497)
.-+++-|+|++|+|||++|.+++-..... ..=..++||+....++++++.+ ++++++.+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 44689999999999999999987543311 1124689999999898888764 56666543
No 272
>PRK09354 recA recombinase A; Provisional
Probab=95.22 E-value=0.072 Score=61.84 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=55.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLC 232 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (1497)
.-+++-|+|++|+||||||.+++..... .=..++||+....++.. .+++++.+.+ .....+....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999998877642 23567899988877753 3455554311 122333333333
Q ss_pred HHHhcCCeEEEEEcCCCC
Q 000447 233 NRLKREKKILVILDDIWT 250 (1497)
Q Consensus 233 ~~l~~~k~~LlVlDdv~~ 250 (1497)
..+.+++.-+||+|.|..
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 333345677999999753
No 273
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.18 Score=63.33 Aligned_cols=132 Identities=19% Similarity=0.230 Sum_probs=77.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
..+.+-++|++|.|||.||+++++..+ .+|-.+.+-. +.. .... .....+..+.....+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~~~-------------l~s----k~vG-esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKGSE-------------LLS----KWVG-ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeCHH-------------Hhc----cccc-hHHHHHHHHHHHHHcC
Confidence 456899999999999999999999653 3343333211 110 0011 1223344445555557
Q ss_pred CeEEEEEcCCCChhhhh-------------hccCCCCC--CCCCeEEEEEeCchhhhhhcC----cccceEEecCCCHHH
Q 000447 239 KKILVILDDIWTSLDLE-------------RTGIPFGD--VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEE 299 (1497)
Q Consensus 239 k~~LlVlDdv~~~~~~~-------------~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e 299 (1497)
.+..|.+|+++....+. .+...+.. ...+-.||-||-.....+.++ .-...+.++.-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 89999999986552221 11111221 222333444555444433211 225578899999999
Q ss_pred HHHHHHHHhCC
Q 000447 300 AWSLFSKVVGN 310 (1497)
Q Consensus 300 ~~~Lf~~~~~~ 310 (1497)
..+.|+.+..+
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999999863
No 274
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.15 E-value=0.12 Score=57.75 Aligned_cols=89 Identities=22% Similarity=0.368 Sum_probs=56.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCc-ceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH-----
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE----- 226 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 226 (1497)
..++|+|..|+||||||+.+++..+. +| +.++++-+.+.. .+.++.+++.+.-... ..+++...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999998863 34 455667776655 3556666655432111 11111111
Q ss_pred -HHHHHHHHHh--cCCeEEEEEcCCCCh
Q 000447 227 -RIMMLCNRLK--REKKILVILDDIWTS 251 (1497)
Q Consensus 227 -~~~~l~~~l~--~~k~~LlVlDdv~~~ 251 (1497)
..-.+.+++. +++++|+|+||+-.-
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1223445554 279999999998543
No 275
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.13 Score=61.18 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=54.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC--CcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR--IFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRL 235 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 235 (1497)
..++|.++|+.|+||||.+..++....... .=..+..+++... ....+-++..++.++.+................+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999999998765321 1124555555431 2233446666776766543333333333333333
Q ss_pred hcCCeEEEEEcCCCC
Q 000447 236 KREKKILVILDDIWT 250 (1497)
Q Consensus 236 ~~~k~~LlVlDdv~~ 250 (1497)
.+.-+||+|.+..
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3556888998744
No 276
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.13 E-value=0.069 Score=59.36 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=36.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (1497)
.-.++.|+|.+|+|||++|.+++...... -..++|++.. .++.+.+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHHH
Confidence 35699999999999999999999876522 4678899887 55555443
No 277
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.12 E-value=0.1 Score=54.52 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=31.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1497)
++.|+|.+|+||||+|..++..... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4789999999999999999988753 235677887765544
No 278
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.07 E-value=0.078 Score=61.84 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=43.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc----CCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1497)
.-.++-|+|.+|+|||+|+.+++-..... ..-..++||+....++++++.+ ++++++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 44688999999999999999987543211 1124789999999999888765 55666554
No 279
>PTZ00494 tuzin-like protein; Provisional
Probab=95.05 E-value=1.5 Score=51.30 Aligned_cols=166 Identities=12% Similarity=0.155 Sum_probs=98.3
Q ss_pred CCCcccccchHHHHHHHHHHHc---CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1497)
+.....++.|+++-..+.+.|. -...+++.+.|.-|.||++|.+....+... ..++|+|.... +-++.|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHH
Confidence 3345567888888777777665 356789999999999999999998887642 46778887654 456777
Q ss_pred HHHhCCCCCCC--ChHHHHHHHHHHHh---cCCeEEEEE--cCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhhh--
Q 000447 212 ADQLGLNFCEE--SDSERIMMLCNRLK---REKKILVIL--DDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-- 282 (1497)
Q Consensus 212 ~~~l~~~~~~~--~~~~~~~~l~~~l~---~~k~~LlVl--Ddv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-- 282 (1497)
.+.++.+..+. +..+-+.+-....+ .++.=+||+ -+-.+....-.-...+.....-|.|++----+.+...
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhc
Confidence 88888764431 12222222222221 244445554 2222221110000112223345667765443332221
Q ss_pred cCcccceEEecCCCHHHHHHHHHHHh
Q 000447 283 EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
....-..|.+++++.++|.++-++..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 23345678999999999999877655
No 280
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.01 E-value=0.18 Score=64.82 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=80.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
+-|.++|++|+|||++|+.++..... .| +.++.. ++.. +. .+ . ....+..+........+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f-----~~is~~----~~~~-~~--~g-----~-~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF-----FTISGS----DFVE-MF--VG-----V-GASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE-----EEEehH----HhHH-hh--hc-----c-cHHHHHHHHHHHHhcCC
Confidence 34999999999999999999887642 22 222211 1111 00 00 0 11223333444444678
Q ss_pred EEEEEcCCCChh------------hh----hhccCCCCC--CCCCeEEEEEeCchhhhhhcC----cccceEEecCCCHH
Q 000447 241 ILVILDDIWTSL------------DL----ERTGIPFGD--VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKE 298 (1497)
Q Consensus 241 ~LlVlDdv~~~~------------~~----~~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~ 298 (1497)
.+|++|+++... .+ ..+...+.. ...+.-+|.||...+..+.+. ...+.+.++.-+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 999999986541 01 111111111 123445555777666544321 12457788888888
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCC
Q 000447 299 EAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1497)
Q Consensus 299 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 331 (1497)
+-.++++.+.......++.. ...+++.+.|.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 88888888875432111111 23456666553
No 281
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.044 Score=60.55 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=25.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 187 (1497)
-|+|.++|++|.|||+|+++++++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4899999999999999999999987654
No 282
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.96 E-value=0.54 Score=53.96 Aligned_cols=166 Identities=8% Similarity=-0.004 Sum_probs=94.4
Q ss_pred HHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHH--------hccCCcceEEEEEe-cCCcCHHHHHHHHHHHhCCC
Q 000447 149 NDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLA--------KEGRIFDEVVFAEV-SQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 149 ~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~ 218 (1497)
+.+...+..++ .++..++|..|.||+++|..+.+.. ....+-+.+.+++. .....++++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 34444554444 4577799999999999999999886 21222223444432 1223333333 333333221
Q ss_pred CCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh--hhhhccCCCCCCCCCeEEEEEe-CchhhhhhcCcccceEEecCC
Q 000447 219 FCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTS-RRRDVLVSEMHCQNNYCVSVL 295 (1497)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTT-R~~~v~~~~~~~~~~~~l~~L 295 (1497)
.. ..+++-++|+|++.... ....+...+.....++.+|++| ....+..........+++.++
T Consensus 85 ~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 85 SF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred Cc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 10 12477788899886552 3444555554445666666655 444444322344678999999
Q ss_pred CHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000447 296 NKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1497)
Q Consensus 296 ~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 337 (1497)
++++..+.+... + .+ ++.++.++...+|.=-|+..
T Consensus 150 ~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 150 DQQKILAKLLSK-N---KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CHHHHHHHHHHc-C---CC---hhHHHHHHHHcCCHHHHHHH
Confidence 999998877654 2 11 23356666666763344444
No 283
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.95 E-value=0.026 Score=68.43 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=41.9
Q ss_pred cccccchHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 138 HEFIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
...++|.++.+++|++.|. +.+.+++.++|++|+||||||+.+++-.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3357899999999999983 45678999999999999999999999775
No 284
>PRK04296 thymidine kinase; Provisional
Probab=94.95 E-value=0.038 Score=59.32 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=61.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHHhc
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE---ESDSERIMMLCNRLKR 237 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 237 (1497)
.++.|+|+.|.||||+|..++.+.... -..++.+. ..++.+.....++.+++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999887532 22333331 2222223334456666543322 122222333322 22
Q ss_pred CCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCchh
Q 000447 238 EKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1497)
Q Consensus 238 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~~ 278 (1497)
++.-+||+|++.-. ++...+...+ ...|..|++|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 35568999998543 2122222111 235778999998854
No 285
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.24 Score=60.57 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=82.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1497)
..-|.|.|+.|+|||+||+++++... ++..-.+..|+++.-. ..+.+++.+..-+ .+.+ .
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~-~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEAL-W 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHH-h
Confidence 34689999999999999999999887 5555566677665322 2333333332211 1111 2
Q ss_pred CCeEEEEEcCCCChh--------hhh----hccCCCC-----CCCCCe--EEEEEeCchhhhhh----cCcccceEEecC
Q 000447 238 EKKILVILDDIWTSL--------DLE----RTGIPFG-----DVHRGC--KILVTSRRRDVLVS----EMHCQNNYCVSV 294 (1497)
Q Consensus 238 ~k~~LlVlDdv~~~~--------~~~----~l~~~l~-----~~~~gs--~ilvTTR~~~v~~~----~~~~~~~~~l~~ 294 (1497)
..+-+|||||++-.. +|. .+...+. ....+. ++|.|.....-.+. ..-.+..+++..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 588899999985331 121 0111110 122333 34445444433222 122234677888
Q ss_pred CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCC
Q 000447 295 LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1497)
Q Consensus 295 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 331 (1497)
+...+=.++++........ ....+...-++.+|+|.
T Consensus 573 p~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCc
Confidence 8877777776665532211 11122233477788774
No 286
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.13 Score=65.19 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=92.6
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc----eEEEEEecCCcCHHHHHHHHH
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD----EVVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~~~~~i~ 212 (1497)
....++||+++++++++.|....-.=-.++|.+|+|||++|.-++.+.-..+--. ..++. -++.
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~g 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDLG 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecHH
Confidence 3556789999999999999842222235789999999999999998875332211 11111 0111
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh----------hhhhccCCCCCCCCCeEEEEEeCchhh--h
Q 000447 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------DLERTGIPFGDVHRGCKILVTSRRRDV--L 280 (1497)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~ilvTTR~~~v--~ 280 (1497)
.-..+..-.-.-++.+..+.+.+.+.++..|++|.+.... +-..+..|--..+.--.|=.||-++-- .
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 1222222223445667777777776679999999985541 111122221111112234445543321 0
Q ss_pred hh---cCcccceEEecCCCHHHHHHHHHHHh
Q 000447 281 VS---EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 281 ~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
.. .......+.++.-+.+++..+++-..
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 00 12345678888888999888886544
No 287
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.76 E-value=0.16 Score=57.37 Aligned_cols=127 Identities=19% Similarity=0.159 Sum_probs=68.6
Q ss_pred HHHHHHHc-CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE---ecCCcCHHHHHHHHH--HHh--CCCCC
Q 000447 149 NDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE---VSQTPDLKRIRREIA--DQL--GLNFC 220 (1497)
Q Consensus 149 ~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~i~--~~l--~~~~~ 220 (1497)
+.++..+. +.+..-++|+|+.|.||||+.+.++..... ..+.+++. +....+..++...+. .+. +...+
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHHHHHHHhccccccccccccc
Confidence 33444443 344578999999999999999999976642 23344432 211111222221110 000 00001
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhh
Q 000447 221 EESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1497)
Q Consensus 221 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~ 281 (1497)
..+.-.....+..-+....+-++|+|++...+.+..+...+. .|..||+||.+..+..
T Consensus 176 v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 176 VLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 001111122233333335788999999987776665544432 4778999998766543
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.1 Score=61.82 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=47.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
..++.++|++|+||||+|..++........+ .+..++... .....+.++..++.++..... ......+.+.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~---~~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYP---VKDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeee---hHHHHHHHHHHHhC
Confidence 4689999999999999999999765322222 233333321 122344445555555554321 12233444455433
Q ss_pred CeEEEEEcC
Q 000447 239 KKILVILDD 247 (1497)
Q Consensus 239 k~~LlVlDd 247 (1497)
+.-+||+|-
T Consensus 299 ~~D~VLIDT 307 (432)
T PRK12724 299 GSELILIDT 307 (432)
T ss_pred CCCEEEEeC
Confidence 445688894
No 289
>PRK14974 cell division protein FtsY; Provisional
Probab=94.73 E-value=0.19 Score=58.64 Aligned_cols=91 Identities=22% Similarity=0.209 Sum_probs=51.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCC----CChHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCE----ESDSERIMMLCN 233 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 233 (1497)
+..+|.++|++|+||||++..++...+. ..+ .++.+.... .....+-++...+.++..... .+....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 4679999999999999999999987753 333 333343221 122334456667777654321 112222222222
Q ss_pred HHhcCCeEEEEEcCCCCh
Q 000447 234 RLKREKKILVILDDIWTS 251 (1497)
Q Consensus 234 ~l~~~k~~LlVlDdv~~~ 251 (1497)
.......-+|++|..-..
T Consensus 217 ~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 322222338899987443
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.04 Score=54.99 Aligned_cols=30 Identities=37% Similarity=0.484 Sum_probs=25.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcc
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 191 (1497)
--|.|.||+|+||||+++.+++..+.+ .|.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~-g~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK-GYK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc-Cce
Confidence 468999999999999999999998744 354
No 291
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.69 E-value=1.5 Score=51.52 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=39.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe-cCCcCHHHHHHHHHHHhCCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV-SQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~ 218 (1497)
...||-.+|.-|.||||-|..+++..+. +.+. +.-|.. ...+...+-++.+.++.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCc-eEEEecccCChHHHHHHHHHHHHcCCc
Confidence 4679999999999999999999998874 2222 222322 22344556667777777664
No 292
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.67 E-value=0.066 Score=56.91 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEE
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 196 (1497)
...+|.++|+.|+||||+|+.+++... ..+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 345899999999999999999999885 335555555
No 293
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.16 Score=59.02 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=56.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1497)
+.++++++|+.|+||||++..++.....+. ..+.+|+.... ....+-++..++.++.......+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 467999999999999999999998764332 34666766432 234556666677666543322333334444444432
Q ss_pred -CCeEEEEEcCCCC
Q 000447 238 -EKKILVILDDIWT 250 (1497)
Q Consensus 238 -~k~~LlVlDdv~~ 250 (1497)
+..-+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3456788887644
No 294
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.60 E-value=0.23 Score=57.97 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=59.7
Q ss_pred HHHHHHHHcCC----CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCC
Q 000447 148 LNDILDALRGP----YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEE 222 (1497)
Q Consensus 148 ~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~ 222 (1497)
...+..++.++ +-++|++||+.|+||||-...++.++.-...=..+..|+... .....+-++.-++-++.+...-
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv 266 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVV 266 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEe
Confidence 33444444433 468999999999999987766666654122234566666542 3345666677777777765544
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEcCCCC
Q 000447 223 SDSERIMMLCNRLKREKKILVILDDIWT 250 (1497)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 250 (1497)
........-...+. +. -+|.+|-+..
T Consensus 267 ~~~~el~~ai~~l~-~~-d~ILVDTaGr 292 (407)
T COG1419 267 YSPKELAEAIEALR-DC-DVILVDTAGR 292 (407)
T ss_pred cCHHHHHHHHHHhh-cC-CEEEEeCCCC
Confidence 44444444444443 23 4566676543
No 295
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.59 E-value=0.3 Score=58.87 Aligned_cols=90 Identities=21% Similarity=0.173 Sum_probs=47.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCC----CChHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCE----ESDSERIMMLCN 233 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 233 (1497)
+..++.++|.+|+||||.|..++...+.+..+ .++-|+... .....+-++...+..+.+... .+..+......+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 35799999999999999999999876422222 333344332 112233344445555443111 122233333333
Q ss_pred HHhcCCeEEEEEcCCC
Q 000447 234 RLKREKKILVILDDIW 249 (1497)
Q Consensus 234 ~l~~~k~~LlVlDdv~ 249 (1497)
.+.....-+||+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3332233367777653
No 296
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.58 E-value=0.19 Score=53.63 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCcccccchHHHHHHHHH----HHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000447 136 EGHEFIESRESILNDILD----ALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1497)
.+...++|-+...+.+++ .+.+...--|.+||--|+||+.|++++.+....+ .-. -|.|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~---------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE---------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH----------
Confidence 345556676666556654 3335555678999999999999999999988632 111 2333221
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHh-cCCeEEEEEcCCCCh---hhhhhccCCCCC---CCCCeEEEEEeCch-hhhh
Q 000447 212 ADQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFGD---VHRGCKILVTSRRR-DVLV 281 (1497)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~---~~~~~l~~~l~~---~~~gs~ilvTTR~~-~v~~ 281 (1497)
+....-.+.+.++ ...||+|..||..-+ +....+...+.. +.+...++..|.++ +...
T Consensus 123 ------------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 123 ------------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred ------------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccccc
Confidence 1112223334443 268999999998654 234445444432 22334455555444 4433
No 297
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.56 E-value=0.15 Score=56.47 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=34.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 216 (1497)
-.++.|.|..|+||||+|.+++.....+ . ..+++++ ...+..++++.+ .+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g-~~~~yi~--~e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN-G-YSVSYVS--TQLTTTEFIKQM-MSLG 75 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEe--CCCCHHHHHHHH-HHhC
Confidence 4599999999999999997777655322 2 3456665 334556666666 3344
No 298
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.54 E-value=0.15 Score=59.81 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=42.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1497)
.-.++-|+|.+|+||||+|.+++....... .=..++||+....++.+++.+ +++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 357899999999999999999987754211 113789999998888877654 4445443
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.46 E-value=0.19 Score=60.99 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=49.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
.++++++|++|+||||++..++........-..+..|+....- ...+-++...+.++..................+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 3589999999999999999998776411122355666653321 1223344445555544322222222333333332
Q ss_pred CeEEEEEcCC
Q 000447 239 KKILVILDDI 248 (1497)
Q Consensus 239 k~~LlVlDdv 248 (1497)
..-+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 4568888965
No 300
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.44 E-value=0.11 Score=60.59 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=43.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1497)
.-.++-|+|.+|+|||++|..++-...... .-..++||+....++++++. +|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 457899999999999999998886443111 11368999999999888765 556666543
No 301
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.42 E-value=0.14 Score=59.63 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=41.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1497)
.-.++.|+|.+|+||||+|..++....... .-..++|++....++.+++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 457999999999999999999886432111 1235799998888887764 445555544
No 302
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.42 E-value=0.12 Score=54.60 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKE 186 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~ 186 (1497)
++.++|++|+||||+++.++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999987753
No 303
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.18 Score=53.93 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=38.4
Q ss_pred CcccccchHHHHHHHHHHHc-------------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 137 GHEFIESRESILNDILDALR-------------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
....+.|-.+.++++.+... -+..+-|.++|++|.|||-+|++|+|+-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 35566788888888887654 13456788999999999999999998763
No 304
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.40 E-value=0.16 Score=59.53 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=42.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1497)
.-.++-|+|++|+|||++|.+++........ =..++||+....++++++.+. ++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCC
Confidence 4568999999999999999999876532211 147899999988888776543 444443
No 305
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.40 E-value=0.22 Score=55.75 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=35.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1497)
+-.++.|.|.+|+|||++|.++..... +.-..++|++... +++++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHHH
Confidence 457999999999999999999876643 1235678887655 455555553
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.23 E-value=0.26 Score=56.08 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=50.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCC----CCChHHHHHHHH
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFC----EESDSERIMMLC 232 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~ 232 (1497)
.+.+++.++|++|+||||.+..++...+.. . ..+.+++... .....+-++...+..+.... ..+.........
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g-~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ-G-KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-C-CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 346899999999999999999999877532 2 3556665542 11223444555566554321 111222222222
Q ss_pred HHHhcCCeEEEEEcCCC
Q 000447 233 NRLKREKKILVILDDIW 249 (1497)
Q Consensus 233 ~~l~~~k~~LlVlDdv~ 249 (1497)
........-++|+|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 23332345578888753
No 307
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.22 E-value=0.23 Score=55.93 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=56.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC-CCCCChHHHHHHHHHHHhc
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN-FCEESDSERIMMLCNRLKR 237 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~l~~~l~~ 237 (1497)
.-+++=|+|+.|.||||+|.+++-... ..-..++||+....++++.+..-....+..- .......+....+.+.+.+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887664 2334789999999999877654433312111 1111222333333333332
Q ss_pred ---CCeEEEEEcCCCC
Q 000447 238 ---EKKILVILDDIWT 250 (1497)
Q Consensus 238 ---~k~~LlVlDdv~~ 250 (1497)
.+--|+|+|.|-.
T Consensus 137 ~~~~~i~LvVVDSvaa 152 (279)
T COG0468 137 SGAEKIDLLVVDSVAA 152 (279)
T ss_pred hccCCCCEEEEecCcc
Confidence 2356888888843
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.20 E-value=0.14 Score=60.71 Aligned_cols=87 Identities=26% Similarity=0.277 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLK 236 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 236 (1497)
.-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++ +.-+++++...+.. ......+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 34699999999999999999999876532 246778776433 3332 22344555432210 01122344555555
Q ss_pred cCCeEEEEEcCCCC
Q 000447 237 REKKILVILDDIWT 250 (1497)
Q Consensus 237 ~~k~~LlVlDdv~~ 250 (1497)
+.+.-+||+|.+..
T Consensus 156 ~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ELKPDLVIIDSIQT 169 (372)
T ss_pred hcCCcEEEEcchHH
Confidence 55777889998843
No 309
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.19 E-value=0.22 Score=56.75 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
....+|+|.|..|+||||+|+.+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988876553
No 310
>PRK06547 hypothetical protein; Provisional
Probab=94.17 E-value=0.065 Score=56.28 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=28.4
Q ss_pred HHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 151 ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 151 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+...+......+|+|.|+.|+||||+|+.+++..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556778899999999999999999999874
No 311
>PTZ00035 Rad51 protein; Provisional
Probab=94.15 E-value=0.21 Score=58.65 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=41.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc----CCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1497)
.-.++.|+|..|+||||++..++-..... ..=..++|++....++.+++ .+++++++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 45799999999999999999988654310 11235679998887777774 444555544
No 312
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.13 E-value=0.41 Score=53.74 Aligned_cols=166 Identities=18% Similarity=0.152 Sum_probs=92.1
Q ss_pred cccchHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc-ceEEEEEecCCcC-HHHHHHHHHH
Q 000447 140 FIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPD-LKRIRREIAD 213 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~i~~ 213 (1497)
.++|-.++..++-.|+. ..+-.-+.|+|+.|.|||+|......+. ..| +...-|.+....- .+-.++.|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 35666666666666665 2344568899999999999998888773 223 2333344443322 2335566666
Q ss_pred HhCCCCC-----CCChHHHHHHHHHHHhc-----CCeEEEEEcCCCChhh-------hhhccCCCCCCCCCeEEEEEeCc
Q 000447 214 QLGLNFC-----EESDSERIMMLCNRLKR-----EKKILVILDDIWTSLD-------LERTGIPFGDVHRGCKILVTSRR 276 (1497)
Q Consensus 214 ~l~~~~~-----~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~ilvTTR~ 276 (1497)
++..+.. ..+..+....+...++. +.++..|+|+.+--.. ..-+...-....+-|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 6543221 12344566677777764 2557888887754310 11111111123456778889996
Q ss_pred hhhhhh--c---Ccccc-eEEecCCCHHHHHHHHHHHh
Q 000447 277 RDVLVS--E---MHCQN-NYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 277 ~~v~~~--~---~~~~~-~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
.....- . .-..+ ++-++.++-+|-..++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 532211 0 11223 34455577777777777655
No 313
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.12 E-value=0.12 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 314
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.0034 Score=67.43 Aligned_cols=79 Identities=27% Similarity=0.263 Sum_probs=37.3
Q ss_pred CCCCCCEEeccCCCCCCCcccCCCCCCcEEEeecCCCcccch--hhcCCCccCEEeccCCCCCCCcChh----hhcCCCC
Q 000447 556 HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPR--EIGELTQLKLLDLSNCSKLKVIPPN----VISSLSQ 629 (1497)
Q Consensus 556 ~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~LP~--~i~~L~~L~~L~Ls~~~~l~~lp~~----~l~~L~~ 629 (1497)
+++.|++|.|+-|.|+.+..+..+++|+.|.|..|.|..+-+ -+.+|++|+.|-|..|.....-+.+ ++.-|++
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 344444444444444444444455555555555444443322 2445555666655554433333221 2445666
Q ss_pred CCEEE
Q 000447 630 LEELY 634 (1497)
Q Consensus 630 L~~L~ 634 (1497)
|+.|+
T Consensus 119 LkKLD 123 (388)
T KOG2123|consen 119 LKKLD 123 (388)
T ss_pred chhcc
Confidence 66664
No 315
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.07 E-value=0.3 Score=62.37 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=55.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
-+|++++|+.|+||||.+..++...........+..++... .....+-++...+.++.......+...+....+.+. +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-D 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-C
Confidence 47999999999999999999998764222223455555432 223456667777777765443223333444444553 3
Q ss_pred CeEEEEEcCCC
Q 000447 239 KKILVILDDIW 249 (1497)
Q Consensus 239 k~~LlVlDdv~ 249 (1497)
+ -+|++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 478888765
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.06 E-value=0.21 Score=55.02 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 317
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.05 E-value=0.16 Score=58.52 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
...+.++|||++|.|||.+|+.+++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 4567999999999999999999999875
No 318
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.95 E-value=0.17 Score=55.04 Aligned_cols=86 Identities=27% Similarity=0.491 Sum_probs=54.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCC-------CCCCCChHHH-----
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGL-------NFCEESDSER----- 227 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~----- 227 (1497)
..++|.|.+|+|||+|+.++.+... -+.++++-+.+.. ++.++.+++...-.. ....+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4689999999999999999998874 3455778887664 456666666443111 1111221111
Q ss_pred -HHHHHHHHh-cCCeEEEEEcCCCC
Q 000447 228 -IMMLCNRLK-REKKILVILDDIWT 250 (1497)
Q Consensus 228 -~~~l~~~l~-~~k~~LlVlDdv~~ 250 (1497)
.-.+.+++. +++++|+|+||+..
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 112233333 48999999999843
No 319
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.90 E-value=0.12 Score=51.41 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=18.3
Q ss_pred CCCccEEEcCCCCCCCCCCchhhcCCCCccEEEecCccCccCCc-cCCCCCCCCEEecc
Q 000447 509 YPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLESLCLD 566 (1497)
Q Consensus 509 ~~~Lr~L~L~~~~~~~~lp~~~f~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~ 566 (1497)
+++|+.+.+..+ ...++...|.+++.|+.+.+.++ +..++. .+.++.+|+.+.+.
T Consensus 11 ~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 11 CSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444444321 12344444444444555554442 333322 23344344444443
No 320
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.89 E-value=0.4 Score=46.56 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHHHHc-------CCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 140 FIESRESILNDILDALR-------GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
.++|..-..+.+++.+. .++.-|++.+|.+|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45676666666666654 2345699999999999999999999873
No 321
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.85 E-value=0.047 Score=54.47 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 000447 163 IGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
|+|.|+.|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999884
No 322
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.83 E-value=0.21 Score=55.14 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=32.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1497)
.-.++.|.|.+|+||||+|.+++...... =..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 45799999999999999999999876422 24577887655543
No 323
>PRK07667 uridine kinase; Provisional
Probab=93.81 E-value=0.087 Score=56.80 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=29.2
Q ss_pred HHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 149 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+.+.+.+. .....+|+|-|.+|+||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555554 34457999999999999999999998875
No 324
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.78 E-value=0.3 Score=58.53 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
-.+++++|+.|+||||++..++.........+.+.++.... .....+-+....+.++..................+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--
Confidence 46999999999999999999987653222233444444322 223344455566666655432222222333333442
Q ss_pred CeEEEEEcCC
Q 000447 239 KKILVILDDI 248 (1497)
Q Consensus 239 k~~LlVlDdv 248 (1497)
..-++++|..
T Consensus 269 ~~d~VLIDTa 278 (420)
T PRK14721 269 GKHMVLIDTV 278 (420)
T ss_pred CCCEEEecCC
Confidence 3445677765
No 325
>PRK04328 hypothetical protein; Provisional
Probab=93.75 E-value=0.25 Score=55.64 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=31.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 201 (1497)
.-.++.|.|.+|+|||++|.++..... +.-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCC
Confidence 456999999999999999999877643 12356788887663
No 326
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.73 E-value=0.24 Score=60.26 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=50.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1497)
-+|++++|+.|+||||++..++.....+..-..+..++... .....+-++...+.++..............-...+ .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L--~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL--R 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc--c
Confidence 36999999999999999999998764332222445555432 23344555666666665432211111111112233 2
Q ss_pred CeEEEEEcCCC
Q 000447 239 KKILVILDDIW 249 (1497)
Q Consensus 239 k~~LlVlDdv~ 249 (1497)
.+..+++|...
T Consensus 334 d~d~VLIDTaG 344 (484)
T PRK06995 334 NKHIVLIDTIG 344 (484)
T ss_pred CCCeEEeCCCC
Confidence 33477778764
No 327
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.72 E-value=0.13 Score=52.19 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=45.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEE
Q 000447 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKIL 242 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L 242 (1497)
|.++|++|+|||+||+.+++... ....-+.++...+..++....--. ... ....... +.... .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~~~~----l~~a~--~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPS-NGQ-FEFKDGP----LVRAM--RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET--TTT-TCEEE-C----CCTTH--HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeec-ccc-ccccccc----ccccc--cceeE
Confidence 67999999999999999998872 223446778888877766443221 000 0000000 00000 27899
Q ss_pred EEEcCCCCh
Q 000447 243 VILDDIWTS 251 (1497)
Q Consensus 243 lVlDdv~~~ 251 (1497)
+|||++...
T Consensus 69 l~lDEin~a 77 (139)
T PF07728_consen 69 LVLDEINRA 77 (139)
T ss_dssp EEESSCGG-
T ss_pred EEECCcccC
Confidence 999999743
No 328
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.67 E-value=1.1 Score=50.75 Aligned_cols=129 Identities=11% Similarity=-0.030 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhcc------------CCcceEEEEE-ecCCcCHHHHHHHHH
Q 000447 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG------------RIFDEVVFAE-VSQTPDLKRIRREIA 212 (1497)
Q Consensus 147 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~F~~~~wv~-vs~~~~~~~~~~~i~ 212 (1497)
.-+++...+..+++ ....++|+.|+||+++|..++...--. .|-|.. |+. .....
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~-~i~p~~~~~---------- 73 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIH-EFSPQGKGR---------- 73 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEE-EEecCCCCC----------
Confidence 34566666665554 577899999999999999999876321 122211 111 11000
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEcCCCCh--hhhhhccCCCCCCCCCeEEEEEeCc-hhhhhhcCc
Q 000447 213 DQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEMH 285 (1497)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~~~ 285 (1497)
.-..+.+..+.+.+. .+++-++|+|+++.. +.+..+...+.....++.+|++|.+ ..+......
T Consensus 74 ---------~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 74 ---------LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred ---------cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 001222333333332 256678889998765 4556655555444456665555555 444432233
Q ss_pred ccceEEecCC
Q 000447 286 CQNNYCVSVL 295 (1497)
Q Consensus 286 ~~~~~~l~~L 295 (1497)
....+.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 3456666654
No 329
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.91 Score=48.39 Aligned_cols=146 Identities=17% Similarity=0.227 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHHc-------------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000447 143 SRESILNDILDALR-------------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1497)
Q Consensus 143 gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1497)
|-++.+.+|.+.+. -...+-+.++|++|.|||-||++|++.- ...|+.||... -+++
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgse---lvqk 220 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE---LVQK 220 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH---HHHH
Confidence 45555666655543 1245678899999999999999999754 23456666532 2222
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh----------h---hhh---ccCCCC--CCCCCeEEE
Q 000447 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------D---LER---TGIPFG--DVHRGCKIL 271 (1497)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~---~~~---l~~~l~--~~~~gs~il 271 (1497)
-|.+. ...+..+.--....-+-+|..|++++.. + -.. +.-.+. ...++-|||
T Consensus 221 ~igeg----------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 221 YIGEG----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred Hhhhh----------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEE
Confidence 22111 1112223323333567788888876541 0 000 111111 134567888
Q ss_pred EEeCchhhhhhc---Cc-ccceEEecCCCHHHHHHHHHHHh
Q 000447 272 VTSRRRDVLVSE---MH-CQNNYCVSVLNKEEAWSLFSKVV 308 (1497)
Q Consensus 272 vTTR~~~v~~~~---~~-~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1497)
..|..-++.+.+ .| .++.++.++-+++.-.++++-+.
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 888766666541 12 24567888877777677776554
No 330
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.64 E-value=0.11 Score=54.82 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.|.|.|.+|+||||+|+.++++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.64 E-value=0.12 Score=56.62 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=38.3
Q ss_pred HHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000447 147 ILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1497)
Q Consensus 147 ~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1497)
...++++.+. ..+..+|+|.|++|+|||||.-++....+.+.+=-.++-|+=|..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 3445565554 34678999999999999999999999888654444555565555554
No 332
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.63 E-value=0.19 Score=50.00 Aligned_cols=106 Identities=20% Similarity=0.339 Sum_probs=64.1
Q ss_pred CCchhhcCCCCccEEEecCccCccCC-ccCCCCCCCCEEeccCCCCCCC--cccCCCCCCcEEEeecCCCcccchh-hcC
Q 000447 526 IPDNFFAGMPKLRVLVLTRMKLLTLP-SSFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPRE-IGE 601 (1497)
Q Consensus 526 lp~~~f~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~LP~~-i~~ 601 (1497)
++...|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..+ ..+.++.+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4566789999999999885 566665 45778888999998875 6655 5678887889998865 55555544 566
Q ss_pred CCccCEEeccCCCCCCCcChhhhcCCCCCCEEEecC
Q 000447 602 LTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGN 637 (1497)
Q Consensus 602 L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~ 637 (1497)
+.+|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888888888653 666777767776 888887654
No 333
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.60 E-value=0.029 Score=36.33 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=13.3
Q ss_pred CCcEEEeecCCCcccchhhcC
Q 000447 581 NLEILSLCCSDIEQLPREIGE 601 (1497)
Q Consensus 581 ~L~~L~Ls~~~l~~LP~~i~~ 601 (1497)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666665544
No 334
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.59 E-value=0.081 Score=57.88 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARL 183 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~ 183 (1497)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999853
No 335
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.57 E-value=0.1 Score=62.69 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc
Q 000447 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 191 (1497)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.......+.|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 5789999999988887644 3489999999999999999998764233343
No 336
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.91 Score=51.96 Aligned_cols=26 Identities=35% Similarity=0.284 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
=+-|..+|++|.|||-||++||....
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 35789999999999999999999875
No 337
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.54 E-value=0.33 Score=52.45 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=30.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCc--------ceEEEEEecCCc
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIF--------DEVVFAEVSQTP 202 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~ 202 (1497)
.++.|+|++|+||||++.+++........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 389999999999999999999887654433 267788776653
No 338
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.54 E-value=0.06 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 339
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.52 E-value=0.044 Score=56.68 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+.|.+.|.+|+||||+|++++...+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4688999999999999999999876
No 340
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.49 E-value=0.14 Score=55.35 Aligned_cols=109 Identities=10% Similarity=0.114 Sum_probs=56.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH---HHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR---EIADQLGLNFCEESDSERIMMLCNRLKR 237 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1497)
.+|.|+|+.|.||||+++.+...... .....++. +.... +.... .+..+-... .......+.+...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t-~e~~~--E~~~~~~~~~i~q~~vg---~~~~~~~~~i~~aLr- 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILT-IEDPI--EFVHESKRSLINQREVG---LDTLSFENALKAALR- 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEE-EcCCc--cccccCccceeeecccC---CCccCHHHHHHHHhc-
Confidence 47899999999999999998876542 22333332 22211 10000 011110001 111122233344443
Q ss_pred CCeEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhhh
Q 000447 238 EKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1497)
Q Consensus 238 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~ 281 (1497)
..+-.+++|++.+.+.+...... ...|..++.|+....+..
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 45669999999877654432221 224556777776665443
No 341
>PRK05439 pantothenate kinase; Provisional
Probab=93.49 E-value=0.43 Score=54.79 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
....+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988664
No 342
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.40 E-value=0.22 Score=56.27 Aligned_cols=97 Identities=14% Similarity=0.170 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------
Q 000447 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------ 221 (1497)
Q Consensus 148 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------ 221 (1497)
.++..+++.+.++.+|.|+|.+|+|||||+..+.+..... . .++.+. ....+..+ .+.++..+.+..+
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~ 165 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVIE-GDQQTVND--AARIRATGTPAIQVNTGKG 165 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCC
Confidence 3344455556789999999999999999999999987522 2 233222 11122222 1223333322111
Q ss_pred -CChHHHHHHHHHHHhcCCeEEEEEcCCCC
Q 000447 222 -ESDSERIMMLCNRLKREKKILVILDDIWT 250 (1497)
Q Consensus 222 -~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 250 (1497)
-.....+......+.....-++|+++|.+
T Consensus 166 Chl~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 166 CHLDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred CcCcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 11233344445555444456788899865
No 343
>PRK06851 hypothetical protein; Provisional
Probab=93.31 E-value=0.6 Score=54.84 Aligned_cols=41 Identities=29% Similarity=0.301 Sum_probs=32.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS 199 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 199 (1497)
+--+++.|.|++|+||||+++.++.... ++.++..++-|-+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~-~~G~~v~~~hC~~ 252 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAE-ERGFDVEVYHCGF 252 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHH-hCCCeEEEEeCCC
Confidence 4457899999999999999999999886 4567666665543
No 344
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.25 E-value=0.076 Score=57.39 Aligned_cols=24 Identities=46% Similarity=0.760 Sum_probs=22.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
||+|.|++|+||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999999886
No 345
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.21 E-value=0.34 Score=51.64 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=61.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE---ecCCcCHHHHHHH------HHHHhCCCCC------CCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE---VSQTPDLKRIRRE------IADQLGLNFC------EES 223 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~------i~~~l~~~~~------~~~ 223 (1497)
+-.+++|+|..|.|||||++.++.... ...+.+++. +. ..+....... +++.++.... .-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 345899999999999999999987543 234445442 22 1122222211 3444443211 111
Q ss_pred hHH-HHHHHHHHHhcCCeEEEEEcCCCChh---hhhhccCCCCC-CCC-CeEEEEEeCchhhh
Q 000447 224 DSE-RIMMLCNRLKREKKILVILDDIWTSL---DLERTGIPFGD-VHR-GCKILVTSRRRDVL 280 (1497)
Q Consensus 224 ~~~-~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~l~~-~~~-gs~ilvTTR~~~v~ 280 (1497)
..+ ..-.+.+.+. ..+-++++|+--..- ..+.+...+.. ... |..||++|.+....
T Consensus 100 ~G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 111 1222344444 578899999864431 12222222211 112 56788888877654
No 346
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.18 E-value=0.07 Score=56.18 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
..+|+|-||-|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999885
No 347
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.15 E-value=0.076 Score=54.16 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 348
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.13 E-value=0.3 Score=51.96 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
-.+++|+|+.|.|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999998764
No 349
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.06 E-value=0.11 Score=52.95 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=27.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE 197 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 197 (1497)
.||.|.|.+|+||||||+++.++..... ..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 5899999999999999999999986432 3445543
No 350
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.56 Score=58.05 Aligned_cols=172 Identities=20% Similarity=0.245 Sum_probs=89.1
Q ss_pred CcccccchHH---HHHHHHHHHcCCC---------eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCH
Q 000447 137 GHEFIESRES---ILNDILDALRGPY---------VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1497)
Q Consensus 137 ~~~~~~gR~~---~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1497)
....+.|.++ ++.++++.|.+.. .+=+.++|++|.|||.||++++....+- | .++|...-+
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~FV 220 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDFV 220 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhhh
Confidence 3445567665 4555666666421 4568999999999999999999887532 3 222221100
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh------------hh----hhccCCCCCC--CC
Q 000447 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------DL----ERTGIPFGDV--HR 266 (1497)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~----~~l~~~l~~~--~~ 266 (1497)
+ +.- + -....+..+....+++-++++++|.++... .+ ..+..-.... +.
T Consensus 221 e-----mfV--G------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 221 E-----MFV--G------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred h-----hhc--C------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 0 000 1 012344455555555678999999876541 11 1221112222 23
Q ss_pred CeEEEEEeCchhhhhh---cCcc-cceEEecCCCHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHhCCCh
Q 000447 267 GCKILVTSRRRDVLVS---EMHC-QNNYCVSVLNKEEAWSLFSKVVGNCVE--DPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 267 gs~ilvTTR~~~v~~~---~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~i~~~c~glP 332 (1497)
|-.|+-.|-..+|.+. ..+. ++.+.++.-+-..-.+.++-++.+..- .-++. .|++.+-|.-
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfs 355 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFS 355 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCcc
Confidence 4444445555556543 1222 334555555545555666655533222 22222 3666665543
No 351
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.34 Score=56.11 Aligned_cols=86 Identities=29% Similarity=0.334 Sum_probs=59.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLK 236 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 236 (1497)
+-.+|.|=|-+|+|||||.-+++.+...+. .+.+|+-.+. ..+ .+--+++++...+.- -.+...+.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 346899999999999999999999987433 6777654433 222 233456666543321 22344666777777
Q ss_pred cCCeEEEEEcCCCC
Q 000447 237 REKKILVILDDIWT 250 (1497)
Q Consensus 237 ~~k~~LlVlDdv~~ 250 (1497)
+.++-++|+|-+..
T Consensus 166 ~~~p~lvVIDSIQT 179 (456)
T COG1066 166 QEKPDLVVIDSIQT 179 (456)
T ss_pred hcCCCEEEEeccce
Confidence 78999999999844
No 352
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.04 E-value=0.47 Score=54.55 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=50.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------CChHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------ESDSERIMMLCN 233 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 233 (1497)
-+++-|+|+.|+||||||..+....... -..++||+....++... ++.++.+.+. +..++.. .+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al-~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQAL-WIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHH-HHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHH-HHHH
Confidence 3589999999999999999999876422 35688999988777643 3444543221 2223333 3334
Q ss_pred HH-hcCCeEEEEEcCCCCh
Q 000447 234 RL-KREKKILVILDDIWTS 251 (1497)
Q Consensus 234 ~l-~~~k~~LlVlDdv~~~ 251 (1497)
.+ +.+.--++|+|-|...
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 44 3345568999998655
No 353
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.02 E-value=0.16 Score=54.12 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=30.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1497)
.|+|.|-||+||||+|..++.+...++.|+ +.=|+...+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCC
Confidence 589999999999999999777765454443 33366666554
No 354
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.02 E-value=1.6 Score=50.71 Aligned_cols=46 Identities=26% Similarity=0.169 Sum_probs=32.7
Q ss_pred eEEecCCCHHHHHHHHHHHhCCC--CCCchHHHHHHHHHHHhCCChHH
Q 000447 289 NYCVSVLNKEEAWSLFSKVVGNC--VEDPDLQTVAIQVANECGGLPIA 334 (1497)
Q Consensus 289 ~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPLa 334 (1497)
.+++++++.+|+..++..+.... ......+...+++.-..+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 78999999999999999887321 11123344566777777998853
No 355
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.01 E-value=0.26 Score=52.86 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=31.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1497)
++.|.|++|+|||++|.+++...... =..++|++... +.+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999988775422 24577877654 34455444
No 356
>PRK08233 hypothetical protein; Provisional
Probab=93.01 E-value=0.08 Score=56.58 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998763
No 357
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.00 E-value=0.56 Score=52.52 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=58.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh--ccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH----
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAK--EGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE---- 226 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 226 (1497)
..++|.|-.|+|||+|+..+.+... .+..-+.++++-+.+.. ++.++.+++.+.-... ..+++...
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 4689999999999999999987753 12234678888887765 4566666665542211 11122111
Q ss_pred --HHHHHHHHHhc--CCeEEEEEcCCCCh
Q 000447 227 --RIMMLCNRLKR--EKKILVILDDIWTS 251 (1497)
Q Consensus 227 --~~~~l~~~l~~--~k~~LlVlDdv~~~ 251 (1497)
..-.+.+++.. ++++|+++||+-.-
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 22234556553 69999999998544
No 358
>PRK06762 hypothetical protein; Provisional
Probab=92.87 E-value=0.092 Score=55.16 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 359
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.86 E-value=0.51 Score=52.74 Aligned_cols=86 Identities=15% Similarity=0.263 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC-----------------
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------------- 221 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------------- 221 (1497)
.-.++.|+|.+|+|||++|.++......+ =..++|++..+. .+++.+.+ ++++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 35689999999999999999997654312 246788887654 45555553 333322110
Q ss_pred ----CChHHHHHHHHHHHhcCCeEEEEEcCCC
Q 000447 222 ----ESDSERIMMLCNRLKREKKILVILDDIW 249 (1497)
Q Consensus 222 ----~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 249 (1497)
.........+.+.+.+.+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1112344444445543466688999864
No 360
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.84 E-value=0.087 Score=56.67 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
++++|+|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999765
No 361
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.83 E-value=0.037 Score=56.10 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 143 SRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 143 gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
|+...++++.+.+. ......|.|+|..|+||+++|+.+.....
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 44444555555444 22334578999999999999999887653
No 362
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.83 E-value=0.47 Score=65.15 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.+=|.++|++|+|||.||+++|.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999999999874
No 363
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.81 E-value=0.31 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARL 183 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~ 183 (1497)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999873
No 364
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.80 E-value=0.2 Score=63.49 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=60.2
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
+.....+.|+++.++.+...+... +.+.++|++|+||||+|+.+++..- ...++..+|..- ...+..++++.+..+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 344567889988888887766644 3699999999999999999998753 344677888654 445777888888777
Q ss_pred hCCC
Q 000447 215 LGLN 218 (1497)
Q Consensus 215 l~~~ 218 (1497)
++..
T Consensus 103 ~G~~ 106 (637)
T PRK13765 103 KGKQ 106 (637)
T ss_pred cCHH
Confidence 6654
No 365
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.79 E-value=0.17 Score=51.21 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=28.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1497)
++|.|+|..|+|||||++.+.+... ++.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4899999999999999999999986 34565555555443
No 366
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.77 E-value=0.098 Score=57.34 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 367
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.76 E-value=1.1 Score=51.57 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=62.8
Q ss_pred ccccchHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec----CCc---CHH
Q 000447 139 EFIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS----QTP---DLK 205 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~---~~~ 205 (1497)
..|+|.++.++++++.+. +.+-+|+.++|+.|.||||||..+-+-.+. | .+|.-.. +.+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 368999999999999987 456789999999999999999999988752 2 3333221 111 145
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Q 000447 206 RIRREIADQLGLNFCEESDSERIMMLCNRL 235 (1497)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 235 (1497)
+.-+++.+.++.....+-..-...++.+..
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y 165 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEY 165 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHh
Confidence 566666777776555443333344444444
No 368
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.75 E-value=0.37 Score=61.86 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=55.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------CChHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------ESDSERIMMLC 232 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 232 (1497)
.-+++-|+|.+|+||||||.+++...... =..++|++....++.+ .+++++.+... ...+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 45789999999999999998877654322 2567899888877743 66777665321 22233333333
Q ss_pred HHHhcCCeEEEEEcCCC
Q 000447 233 NRLKREKKILVILDDIW 249 (1497)
Q Consensus 233 ~~l~~~k~~LlVlDdv~ 249 (1497)
..+.+++--+||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 33444567789999884
No 369
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.75 E-value=0.22 Score=56.34 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKE 186 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 186 (1497)
+.|.|.|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998764
No 370
>PRK03839 putative kinase; Provisional
Probab=92.72 E-value=0.092 Score=56.03 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.|.|+|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 371
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.71 E-value=0.14 Score=66.75 Aligned_cols=186 Identities=16% Similarity=0.153 Sum_probs=90.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH-hccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC----CCChHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLA-KEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC----EESDSERIMMLCN 233 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~ 233 (1497)
+.++++|+|+.|.||||+.+.+.-.. ..... .+|....... ......+...++.... ...-......+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 44799999999999999999998652 11111 1111111000 0001111111111000 0000111112222
Q ss_pred HHhc-CCeEEEEEcCCCChhh---hhhc----cCCCCCCCCCeEEEEEeCchhhhhhcCccc--ceEEecCCCHHHHHHH
Q 000447 234 RLKR-EKKILVILDDIWTSLD---LERT----GIPFGDVHRGCKILVTSRRRDVLVSEMHCQ--NNYCVSVLNKEEAWSL 303 (1497)
Q Consensus 234 ~l~~-~k~~LlVlDdv~~~~~---~~~l----~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~--~~~~l~~L~~~e~~~L 303 (1497)
-+.. .++-|+++|+.....+ ...+ ...+. ..|+.+|+||....+........ ....+. ++.+ ...
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~- 470 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS- 470 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-
Confidence 2221 4789999999865422 1222 12221 35788999999987754211111 111111 1111 000
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHHHHHHHHH
Q 000447 304 FSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1497)
Q Consensus 304 f~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~l~~l~ 358 (1497)
|..+.-...+. ...|-.|++++ |+|-.|.--|..+-.....+++.++..+.
T Consensus 471 p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 471 PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111111111 22466788777 79999998888887666666777777776
No 372
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.71 E-value=0.34 Score=50.15 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
-.++.|.|+.|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3579999999999999999999875
No 373
>PTZ00301 uridine kinase; Provisional
Probab=92.70 E-value=0.1 Score=56.65 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47899999999999999999988764
No 374
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.68 E-value=0.78 Score=47.11 Aligned_cols=115 Identities=23% Similarity=0.225 Sum_probs=60.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC---CcCHHHHHHHHHHHh-----CCC--CCCCChHH---H
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ---TPDLKRIRREIADQL-----GLN--FCEESDSE---R 227 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l-----~~~--~~~~~~~~---~ 227 (1497)
..|-|++..|.||||+|...+-+..- ..+ .+.++-.-+ ......+++.+- .+ +.. .......+ .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~-~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG-HGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 46888888999999999999987652 233 233333222 334444444431 11 110 00011111 1
Q ss_pred H----HHHHHHHhcCCeEEEEEcCCCChh-----hhhhccCCCCCCCCCeEEEEEeCchh
Q 000447 228 I----MMLCNRLKREKKILVILDDIWTSL-----DLERTGIPFGDVHRGCKILVTSRRRD 278 (1497)
Q Consensus 228 ~----~~l~~~l~~~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~ilvTTR~~~ 278 (1497)
. ....+.+..++--|||||++-... +.+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1 122233333455699999985441 22333333333445668999999864
No 375
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.61 E-value=0.11 Score=56.71 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
...+|+|+|+.|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998764
No 376
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.60 E-value=0.16 Score=53.15 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC--CcCHHHHHHHHHHHhCCCCCCCChHH-HHHHHHHHHh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ--TPDLKRIRREIADQLGLNFCEESDSE-RIMMLCNRLK 236 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~l~~~l~ 236 (1497)
-.+++|+|..|.|||||.+.++.... ...+.+++.-.. ..+..+..+ +.++.- .+-+..+ ..-.+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 35899999999999999999986542 234555543211 111111111 111110 0111221 1222334444
Q ss_pred cCCeEEEEEcCCCChhh---hhhccCCCCC-CCCCeEEEEEeCchhhhh
Q 000447 237 REKKILVILDDIWTSLD---LERTGIPFGD-VHRGCKILVTSRRRDVLV 281 (1497)
Q Consensus 237 ~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~ilvTTR~~~v~~ 281 (1497)
.++-++++|+--..-| .+.+...+.. ...|..||++|.+.....
T Consensus 99 -~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 -RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred -cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5778889998644311 1222112211 123566888888876443
No 377
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.58 E-value=0.32 Score=51.35 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+-.+++|+|+.|.|||||.+.++.-..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345899999999999999999998653
No 378
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.57 E-value=0.11 Score=49.92 Aligned_cols=23 Identities=52% Similarity=0.729 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 000447 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
|.|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999998765
No 379
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.56 E-value=0.83 Score=53.13 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 186 (1497)
+..+++++|++|+||||++..++...+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999988763
No 380
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.49 E-value=0.61 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998764
No 381
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.47 E-value=0.12 Score=56.90 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.|.|+|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998763
No 382
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.46 E-value=0.17 Score=60.81 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHHHHc-------CC---------CeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 140 FIESRESILNDILDALR-------GP---------YVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~-------~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
.++|.+..++.+...+. .. ..+-+.++|++|+|||++|+.++...
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 47898888777754441 10 12568999999999999999999765
No 383
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.44 E-value=0.067 Score=34.63 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=15.2
Q ss_pred CccEEEecCccCccCCccCCCC
Q 000447 536 KLRVLVLTRMKLLTLPSSFCHL 557 (1497)
Q Consensus 536 ~Lr~L~L~~~~i~~lp~~i~~L 557 (1497)
+|++|+|++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4677788888777777766543
No 384
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.41 E-value=0.24 Score=54.99 Aligned_cols=60 Identities=27% Similarity=0.309 Sum_probs=45.1
Q ss_pred HHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHH
Q 000447 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1497)
Q Consensus 149 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (1497)
.+++..+. ..+..+|+|.|.||+|||||.-++....+.+.+--.++=|+-|..++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 45555555 4567799999999999999999999998766665666767767766544444
No 385
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.41 E-value=0.56 Score=56.84 Aligned_cols=90 Identities=22% Similarity=0.338 Sum_probs=58.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChH------
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDS------ 225 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------ 225 (1497)
-..++|.|.+|+|||||+.++++.... ++-+.++++-+.+.. .+.++..++...-... ..+++..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 346899999999999999999987753 356778888776654 4566666665432211 1111211
Q ss_pred HHHHHHHHHHhc--CCeEEEEEcCCCC
Q 000447 226 ERIMMLCNRLKR--EKKILVILDDIWT 250 (1497)
Q Consensus 226 ~~~~~l~~~l~~--~k~~LlVlDdv~~ 250 (1497)
..+-.+.+++.. ++++||++|++-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 122334555542 7999999999844
No 386
>PRK00625 shikimate kinase; Provisional
Probab=92.38 E-value=0.1 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.|.++||+|+||||+|+.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998764
No 387
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.019 Score=59.54 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=35.1
Q ss_pred ccccEEEeCCCCCCchhhccCCcchhhccccceeEeeccCCccccC--CCCcccCcccEEEEecCCCCccc
Q 000447 1151 THIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLV--PSSPSFRNLITLEVWYCKGLKNL 1219 (1497)
Q Consensus 1151 ~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~~l~sL~~L~I~~C~~L~~l 1219 (1497)
..++.++-+++ +|..+|.+.+..+++++.|.+.+|..+.+.- -..+-.++|+.|+|+.|+++++-
T Consensus 101 ~~IeaVDAsds----~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 101 VKIEAVDASDS----SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred ceEEEEecCCc----hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 34666666664 3444455555666666777777766654320 00123455555555555555543
No 388
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.29 E-value=0.36 Score=57.02 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=45.6
Q ss_pred cccchHHHHHHHHHHHcC--------------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc---ceEEEEEe-cCC
Q 000447 140 FIESRESILNDILDALRG--------------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF---DEVVFAEV-SQT 201 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v-s~~ 201 (1497)
.++|+++.+..+.-.+.. ...+-|.++|++|+|||++|+.++.... ..| +...+... ...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~--~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC--CeEEEeecceeecCCccc
Confidence 467877777766554431 1236789999999999999999998874 223 22222222 122
Q ss_pred cCHHHHHHHHHHH
Q 000447 202 PDLKRIRREIADQ 214 (1497)
Q Consensus 202 ~~~~~~~~~i~~~ 214 (1497)
.+.+++++.+...
T Consensus 91 ~dvE~i~r~l~e~ 103 (441)
T TIGR00390 91 RDVESMVRDLTDA 103 (441)
T ss_pred CCHHHHHHHHHHH
Confidence 3566666665544
No 389
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.28 E-value=0.56 Score=53.14 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=30.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1497)
.-.++.|.|.+|+|||++|.+++.....+ =..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 34699999999999999999987765322 24677888764
No 390
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.26 E-value=0.14 Score=54.91 Aligned_cols=27 Identities=41% Similarity=0.575 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
++.+|+|.|.+|.||||+|+.++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 567999999999999999999999885
No 391
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.25 E-value=0.44 Score=48.60 Aligned_cols=25 Identities=40% Similarity=0.460 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
-.+++|+|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3589999999999999999998764
No 392
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=3.2 Score=51.40 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=80.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
.=|.++|++|.|||-||.+++..... -+|+|-.. +++.+ .+|. .++.+..+.++.+.-|+
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP----ElL~K---yIGa------SEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP----ELLSK---YIGA------SEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH----HHHHH---Hhcc------cHHHHHHHHHHhhccCC
Confidence 35889999999999999999976542 23555432 22221 1221 23456667777777799
Q ss_pred EEEEEcCCCChh-------------hhhhccCCCC--CCCCCeEEEEEeCchhhhhh---cCcccc-eEEecCCCHHHHH
Q 000447 241 ILVILDDIWTSL-------------DLERTGIPFG--DVHRGCKILVTSRRRDVLVS---EMHCQN-NYCVSVLNKEEAW 301 (1497)
Q Consensus 241 ~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~gs~ilvTTR~~~v~~~---~~~~~~-~~~l~~L~~~e~~ 301 (1497)
+.+.+|+.++.. ....+...+. .+-.|--|+-.|...+..+. .-|.-. .+.-+.-++.+-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 999999986641 1223322222 12346656654433333332 122222 2222233556667
Q ss_pred HHHHHHhCC--CCCCchHHHHHHHHHHHhCCCh
Q 000447 302 SLFSKVVGN--CVEDPDLQTVAIQVANECGGLP 332 (1497)
Q Consensus 302 ~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~glP 332 (1497)
++|+..... ...+.+ .+.++.+..|..
T Consensus 842 ~il~~ls~s~~~~~~vd----l~~~a~~T~g~t 870 (952)
T KOG0735|consen 842 EILQVLSNSLLKDTDVD----LECLAQKTDGFT 870 (952)
T ss_pred HHHHHHhhccCCccccc----hHHHhhhcCCCc
Confidence 777665531 122233 235566666654
No 393
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=2.1 Score=46.06 Aligned_cols=190 Identities=14% Similarity=0.152 Sum_probs=96.4
Q ss_pred cCCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000447 134 YNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1497)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1497)
|......+.|-++.++++++.+. . ...+-+..+|++|.|||-+|++.+.+-. .-|-..+ .
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~--aTFLKLA-----g 238 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN--ATFLKLA-----G 238 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc--chHHHhc-----c
Confidence 34456677889999999999865 0 2345688999999999999999887643 2221000 0
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCChh----------h---hhh---ccCCCCC-
Q 000447 201 TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------D---LER---TGIPFGD- 263 (1497)
Q Consensus 201 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~---~~~---l~~~l~~- 263 (1497)
+.-+ ++... + ....+.....-.+...+.+|.+|+++-.. + -.. +.-.+..
T Consensus 239 ---PQLV------QMfIG---d-GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGF 305 (424)
T KOG0652|consen 239 ---PQLV------QMFIG---D-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 305 (424)
T ss_pred ---hHHH------hhhhc---c-hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCC
Confidence 0000 00000 0 11112222222234578888889864320 0 000 1111111
Q ss_pred -CCCCeEEEEEeCchhhhhhc-C--c-ccceEEecCCCHHHHHHHHHHHhC--CCCCCchHHHHHHHHHHHhCCChHHHH
Q 000447 264 -VHRGCKILVTSRRRDVLVSE-M--H-CQNNYCVSVLNKEEAWSLFSKVVG--NCVEDPDLQTVAIQVANECGGLPIAIL 336 (1497)
Q Consensus 264 -~~~gs~ilvTTR~~~v~~~~-~--~-~~~~~~l~~L~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (1497)
....-|||-.|..-++.+.+ + | -.+.|+++.-+++.-..+++-+.. +..++-.++++++.--..-|.---|+-
T Consensus 306 ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVc 385 (424)
T KOG0652|consen 306 SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVC 385 (424)
T ss_pred CCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeee
Confidence 22356788877766665541 1 2 134566554444444445554443 334445566665543332222234555
Q ss_pred HHHHHhc
Q 000447 337 TVARTLR 343 (1497)
Q Consensus 337 ~~~~~L~ 343 (1497)
+=|++++
T Consensus 386 VEAGMiA 392 (424)
T KOG0652|consen 386 VEAGMIA 392 (424)
T ss_pred hhhhHHH
Confidence 5566554
No 394
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.19 E-value=0.37 Score=50.78 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVAR 182 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~ 182 (1497)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999999864
No 395
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.18 E-value=0.6 Score=48.93 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
-.+++|+|..|.|||||++.++....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987643
No 396
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.18 E-value=0.12 Score=50.73 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=26.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 201 (1497)
+-|.|.|.+|+||||+|.+++.... .-|++++.-
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~ 41 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDL 41 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhH
Confidence 4588999999999999999996543 236776643
No 397
>PRK04040 adenylate kinase; Provisional
Probab=92.17 E-value=0.13 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.+|+|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998763
No 398
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.15 E-value=0.36 Score=59.17 Aligned_cols=86 Identities=24% Similarity=0.310 Sum_probs=49.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLK 236 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 236 (1497)
.-.++.|.|.+|+|||||+.+++....... ..++|++..+. ..++.. -++.++...... ......+.+...+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 446899999999999999999987764321 35778775543 333322 233444321110 00012334444444
Q ss_pred cCCeEEEEEcCCC
Q 000447 237 REKKILVILDDIW 249 (1497)
Q Consensus 237 ~~k~~LlVlDdv~ 249 (1497)
+.+.-++|+|.+.
T Consensus 168 ~~~~~~vVIDSIq 180 (454)
T TIGR00416 168 EENPQACVIDSIQ 180 (454)
T ss_pred hcCCcEEEEecch
Confidence 4455677778773
No 399
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.13 E-value=0.29 Score=59.87 Aligned_cols=86 Identities=24% Similarity=0.288 Sum_probs=50.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLK 236 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 236 (1497)
.-.++.|.|.+|+|||||+.+++.....+ -..++|++..+. ..++.. -++.++...... ......+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 34699999999999999999999876522 235778776543 333322 245555432110 00012334444444
Q ss_pred cCCeEEEEEcCCC
Q 000447 237 REKKILVILDDIW 249 (1497)
Q Consensus 237 ~~k~~LlVlDdv~ 249 (1497)
+.+.-+||+|.+.
T Consensus 154 ~~~~~lVVIDSIq 166 (446)
T PRK11823 154 EEKPDLVVIDSIQ 166 (446)
T ss_pred hhCCCEEEEechh
Confidence 4456678888773
No 400
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.11 E-value=0.15 Score=57.96 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=48.5
Q ss_pred HHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHH
Q 000447 149 NDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERI 228 (1497)
Q Consensus 149 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 228 (1497)
..+++.+...+ +-+.++|+.|+|||++++........ ..| .+.-++.+...+...+++.+-..+......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------- 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------- 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-------
Confidence 34555554444 45699999999999999998865431 122 133455565555554443322222111000
Q ss_pred HHHHHHHhcCCeEEEEEcCCCCh
Q 000447 229 MMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 229 ~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
.+ .-..+|+.++.+||+.-.
T Consensus 93 --~~-gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 93 --VY-GPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp --EE-EEESSSEEEEEEETTT-S
T ss_pred --CC-CCCCCcEEEEEecccCCC
Confidence 00 001268899999998443
No 401
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.09 E-value=0.66 Score=55.83 Aligned_cols=90 Identities=20% Similarity=0.385 Sum_probs=58.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChH------H
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDS------E 226 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~ 226 (1497)
..++|.|.+|+|||+|+..+.+... +.+-+.++++-+.+.. .+.++.+++...-... ..+++.. .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999999987754 2334778888887665 4566666665432111 1112211 1
Q ss_pred HHHHHHHHHhc--CCeEEEEEcCCCCh
Q 000447 227 RIMMLCNRLKR--EKKILVILDDIWTS 251 (1497)
Q Consensus 227 ~~~~l~~~l~~--~k~~LlVlDdv~~~ 251 (1497)
..-.+.+++.. ++++|+++||+-.-
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 23345566653 79999999998544
No 402
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.07 E-value=2 Score=53.47 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=66.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc-C-----CcceEEEEEecC-----CcCH------------HHHHHHHHHHhC
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG-R-----IFDEVVFAEVSQ-----TPDL------------KRIRREIADQLG 216 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~-----~F~~~~wv~vs~-----~~~~------------~~~~~~i~~~l~ 216 (1497)
-..|+|+|+.|+|||||.+.+....... . .--.+.++.-.. ..++ +...+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3579999999999999999997655321 0 001112221111 0011 333344444444
Q ss_pred CCCCC-------CChHHHHHHHHHHHhcCCeEEEEEcCCCCh------hhhhhccCCCCCCCCCeEEEEEeCchhhhhhc
Q 000447 217 LNFCE-------ESDSERIMMLCNRLKREKKILVILDDIWTS------LDLERTGIPFGDVHRGCKILVTSRRRDVLVSE 283 (1497)
Q Consensus 217 ~~~~~-------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~ 283 (1497)
-..+. -+-.+...-....+.-.++-+||||+=-+. +.+++....+ +|+ ||+.|.++...+.
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gt-vl~VSHDr~Fl~~- 501 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGT-VLLVSHDRYFLDR- 501 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCe-EEEEeCCHHHHHh-
Confidence 32211 122222222333444478899999974433 3333322222 466 8889999987773
Q ss_pred CcccceEEecC
Q 000447 284 MHCQNNYCVSV 294 (1497)
Q Consensus 284 ~~~~~~~~l~~ 294 (1497)
.. .+.+.+++
T Consensus 502 va-~~i~~~~~ 511 (530)
T COG0488 502 VA-TRIWLVED 511 (530)
T ss_pred hc-ceEEEEcC
Confidence 22 44555543
No 403
>PRK06217 hypothetical protein; Validated
Probab=92.05 E-value=0.22 Score=53.16 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=26.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCc--ceEEEE
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIF--DEVVFA 196 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv 196 (1497)
.|.|.|++|+||||+|+++.+.... .+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 5899999999999999999988642 233 455663
No 404
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.01 E-value=0.31 Score=56.74 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 000447 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+.+.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998875
No 405
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.97 E-value=0.82 Score=55.22 Aligned_cols=90 Identities=22% Similarity=0.362 Sum_probs=56.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE------ 226 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 226 (1497)
..++|.|..|+|||||+..++....... =+.++++-+.+.. .+.++++++...-... ..+++...
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999887765221 2466777776654 4566666666532211 11122111
Q ss_pred HHHHHHHHHh--cCCeEEEEEcCCCCh
Q 000447 227 RIMMLCNRLK--REKKILVILDDIWTS 251 (1497)
Q Consensus 227 ~~~~l~~~l~--~~k~~LlVlDdv~~~ 251 (1497)
..-.+.+++. +++++||++|++-.-
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHHH
Confidence 2223455553 479999999998543
No 406
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.96 E-value=0.76 Score=47.77 Aligned_cols=118 Identities=20% Similarity=0.122 Sum_probs=62.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEE--EEEecCCcCHHHHHHHHH---HHhCCC--CCCCC---hHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV--FAEVSQTPDLKRIRREIA---DQLGLN--FCEES---DSERIM 229 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~i~---~~l~~~--~~~~~---~~~~~~ 229 (1497)
...|-|++..|.||||.|..++-+.. ...+...+ |+.-.........++... .+.+.. ....+ +...+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~-~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL-GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 46788899999999999999998875 23333221 333232234444443320 001111 01111 111122
Q ss_pred ----HHHHHHhcCCeEEEEEcCCCChh-----hhhhccCCCCCCCCCeEEEEEeCchh
Q 000447 230 ----MLCNRLKREKKILVILDDIWTSL-----DLERTGIPFGDVHRGCKILVTSRRRD 278 (1497)
Q Consensus 230 ----~l~~~l~~~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~ilvTTR~~~ 278 (1497)
...+.+..++--+||||++-..- +.+.+...+.....+.-||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 22333433555699999985432 22333333333445678999999773
No 407
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.67 Score=59.95 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=64.3
Q ss_pred ccccchHHHHHHHHHHHcC------C--CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000447 139 EFIESRESILNDILDALRG------P--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1497)
..++|.++.+..|.+.+.. + ....+.+.|+.|+|||.||++++.-.- +..+..+-++.++ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhh------hhh-
Confidence 4456777778777777761 2 466889999999999999999998762 2233444444443 222
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHhcCCeEEEEEcCCCCh
Q 000447 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1497)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1497)
+.+-.+.+ +.--..+....+-+.+++.--.+|+||||+..
T Consensus 633 vskligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 22222322 21112234456777777555567788999776
No 408
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.93 E-value=0.66 Score=60.86 Aligned_cols=179 Identities=19% Similarity=0.269 Sum_probs=91.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh--ccC------------CcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCC
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK--EGR------------IFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEES 223 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~------------~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 223 (1497)
.+.+++.|+|+.+.||||+.+.+.--.- ... .|+. ++..++...++..-+......
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~--------- 394 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGH--------- 394 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHHH---------
Confidence 3457899999999999999999875421 001 1111 122222222211111111100
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEcCCCChhh---hhhc----cCCCCCCCCCeEEEEEeCchhhhhhcCcccc--eEEecC
Q 000447 224 DSERIMMLCNRLKREKKILVILDDIWTSLD---LERT----GIPFGDVHRGCKILVTSRRRDVLVSEMHCQN--NYCVSV 294 (1497)
Q Consensus 224 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l----~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~~--~~~l~~ 294 (1497)
......+...+ .++-|+++|+.....+ ...+ ...+ ...|+.+|+||...++......... ...+.
T Consensus 395 -m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~- 468 (782)
T PRK00409 395 -MTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVE- 468 (782)
T ss_pred -HHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-
Confidence 01112222222 4778999999865422 1122 1122 1247899999999887663111111 11221
Q ss_pred CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHHHHHHHHH
Q 000447 295 LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1497)
Q Consensus 295 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~l~~l~ 358 (1497)
++.+...-.++-..|... ...|-.|++++ |+|-.|.--|..+-.....+.+.++..+.
T Consensus 469 ~d~~~l~~~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 469 FDEETLRPTYRLLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred EecCcCcEEEEEeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 111110001111112211 22366777777 79999998888887766666788877776
No 409
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=91.93 E-value=0.4 Score=57.30 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=54.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC-HHHHHHHHHHHhCCC-------CCCCChHH-----
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD-LKRIRREIADQLGLN-------FCEESDSE----- 226 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 226 (1497)
-..++|+|..|+|||||++.++.... .+.++.+-+.+... +.++.+.++..-+.. ..+++...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999986432 35666666766553 455666654432211 11122111
Q ss_pred -HHHHHHHHHh-cCCeEEEEEcCCCCh
Q 000447 227 -RIMMLCNRLK-REKKILVILDDIWTS 251 (1497)
Q Consensus 227 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1497)
.+-.+.+++. +++++|+++||+-.-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1223445553 489999999998543
No 410
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.91 E-value=0.55 Score=58.47 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------------C
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------------E 222 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------------~ 222 (1497)
+-.++.|.|++|+||||||.+++.....+ =..++++...+ +..++.+.+ +.++.+..+ .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 45799999999999999999999877422 24566665443 455555554 455433211 1
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEcCCC
Q 000447 223 SDSERIMMLCNRLKREKKILVILDDIW 249 (1497)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 249 (1497)
...+.++.+.+.+.+.+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 124455555666554455567777763
No 411
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.87 E-value=0.7 Score=51.78 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+..|+|++|+|||+||..++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999998654
No 412
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=91.80 E-value=0.9 Score=57.65 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=37.8
Q ss_pred CcccccchHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 137 GHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
....++|+...+.++++.+. ...-..|.|+|..|+|||++|+.+.+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 44578898888888887765 2333457899999999999999998764
No 413
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.72 E-value=0.46 Score=55.19 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=26.0
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000447 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1497)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 186 (1497)
.....+|+|+|++|+||||++..+......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999987653
No 414
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=1.4 Score=50.59 Aligned_cols=51 Identities=27% Similarity=0.305 Sum_probs=36.6
Q ss_pred cccccchHHHHHHHHHHHc---------C-----CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc
Q 000447 138 HEFIESRESILNDILDALR---------G-----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF 190 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~---------~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 190 (1497)
...+.|-+..++.+-+... . ...+-|-++|++|.|||-||++++.+.. ..|
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag--a~f 155 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG--ANF 155 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC--CCc
Confidence 3445566666666665432 0 2456789999999999999999999874 445
No 415
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=91.61 E-value=0.65 Score=55.83 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=50.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC------CCCCChHH------H
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN------FCEESDSE------R 227 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~------~ 227 (1497)
-..++|+|..|+|||||++.++...+ ....++|..-....++.++........... ..+++... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999998876442 223455544334445555544443332111 11111111 1
Q ss_pred HHHHHHHHh-cCCeEEEEEcCCCCh
Q 000447 228 IMMLCNRLK-REKKILVILDDIWTS 251 (1497)
Q Consensus 228 ~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1497)
.-.+.+++. +++++|+++||+-.-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 222344443 379999999998543
No 416
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.54 E-value=0.57 Score=49.02 Aligned_cols=80 Identities=21% Similarity=0.133 Sum_probs=45.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC-CeE
Q 000447 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE-KKI 241 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-k~~ 241 (1497)
+.|.|.+|+|||++|.+++... ...++++.-.+..+. +..+.|.+-...........+....+.+.+.+. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999998652 245677766666654 344444332222212222222223333334221 334
Q ss_pred EEEEcCC
Q 000447 242 LVILDDI 248 (1497)
Q Consensus 242 LlVlDdv 248 (1497)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7889986
No 417
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.54 E-value=0.37 Score=53.56 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=49.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC----------------C---
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF----------------C--- 220 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------------~--- 220 (1497)
-.++.|.|.+|+|||++|.+++.....+ .=..++|++..+.. +++.+.+. +++.+. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 3589999999999999999987655322 01356777765543 45554432 333210 0
Q ss_pred --CCChHHHHHHHHHHHhcCCeEEEEEcCCC
Q 000447 221 --EESDSERIMMLCNRLKREKKILVILDDIW 249 (1497)
Q Consensus 221 --~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 249 (1497)
..+..+....+.+.+.+.+...+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 12233444455555544455788888753
No 418
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.48 E-value=0.34 Score=55.94 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=37.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1497)
.+++.+.|.||+||||+|.+.+-...... ..++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999887776443 44777777777776666544
No 419
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.44 E-value=0.58 Score=51.83 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHHHc-------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 139 EFIESRESILNDILDALR-------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
..++|..-..+.++..+. ..+.=|++.+|..|+||.-.|+.+++...
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 345677777777777776 13456999999999999999999998764
No 420
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.37 E-value=1.1 Score=53.68 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=64.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC---------Ccc-----------eEEEE-----EecCCcCHHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR---------IFD-----------EVVFA-----EVSQTPDLKRIRREIAD 213 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F~-----------~~~wv-----~vs~~~~~~~~~~~i~~ 213 (1497)
.-..|++||+.|+|||||.+-++-+..... +|. ...|. ..-......+..+.|+.
T Consensus 415 ~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilg 494 (614)
T KOG0927|consen 415 LDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILG 494 (614)
T ss_pred cccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHH
Confidence 345799999999999999999998764221 111 00010 00011234566777777
Q ss_pred HhCCCCCCC-------ChHHHHHHHHHHHhcCCeEEEEEcCCCChhh---hhhccCCCCCCCCCeEEEEEeCchhhhh
Q 000447 214 QLGLNFCEE-------SDSERIMMLCNRLKREKKILVILDDIWTSLD---LERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1497)
Q Consensus 214 ~l~~~~~~~-------~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~ilvTTR~~~v~~ 281 (1497)
..+...+.. ++.+...-+.-++.-..+-+||||+--+--+ .+.+..++. .-.|. +|++|.+..+..
T Consensus 495 rfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiN-e~~Gg-vv~vSHDfrlI~ 570 (614)
T KOG0927|consen 495 RFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN-EFPGG-VVLVSHDFRLIS 570 (614)
T ss_pred HhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHh-ccCCc-eeeeechhhHHH
Confidence 777653322 1222222233333336889999998544422 122222222 12344 677777665444
No 421
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.36 E-value=1.4 Score=51.38 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=30.1
Q ss_pred HHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 000447 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1497)
Q Consensus 149 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 187 (1497)
.++++.+. ..+..+|+|.|.+|+||||++..+....+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 3567899999999999999999998887633
No 422
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.35 E-value=0.16 Score=53.79 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998863
No 423
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=91.34 E-value=0.21 Score=54.04 Aligned_cols=60 Identities=25% Similarity=0.298 Sum_probs=37.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEE-------EEecCCcCHHHHH--HHHHHHhCCC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF-------AEVSQTPDLKRIR--REIADQLGLN 218 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------v~vs~~~~~~~~~--~~i~~~l~~~ 218 (1497)
+..+|.++||+|.||||..++++.....+..-..++= +...-+.|+++.. ++..++.+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 4568899999999999999999988764432222221 1223344565554 4566665544
No 424
>PF13245 AAA_19: Part of AAA domain
Probab=91.31 E-value=0.39 Score=42.64 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=18.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+-+++.|.|++|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678889999999995555544443
No 425
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=91.31 E-value=0.66 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
++++|+|+.|.||||+.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998654
No 426
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=91.30 E-value=0.56 Score=56.20 Aligned_cols=46 Identities=26% Similarity=0.244 Sum_probs=34.8
Q ss_pred ccccchHHHHHHHHHHHc-------C-------C----CeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 139 EFIESRESILNDILDALR-------G-------P----YVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~-------~-------~----~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
..++|.++.++.+...+. . . ....|.++|++|+|||++|+.++...
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 346899888887765551 1 1 12479999999999999999999765
No 427
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.29 E-value=0.16 Score=49.39 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCcce
Q 000447 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDE 192 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 192 (1497)
|-|+|.+|+||||+|+.++.... ..|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--CceeE
Confidence 67999999999999999998764 44643
No 428
>PRK13768 GTPase; Provisional
Probab=91.28 E-value=0.8 Score=51.67 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 198 (1497)
..++.|.|+||+||||++..+....+... ..++.|+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 35899999999999999999998775322 23444544
No 429
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.22 E-value=1.2 Score=51.06 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=36.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
-.++.|.|.+|+||||+|.+++....... =..++|+++.. +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc--CHHHHHHHHHHH
Confidence 35889999999999999999987764221 24577887655 445566555443
No 430
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.20 E-value=0.62 Score=49.40 Aligned_cols=118 Identities=22% Similarity=0.256 Sum_probs=63.7
Q ss_pred HHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-CCcce--EEEEEecCCcCHHHHHHHHHHHhC--------CCC
Q 000447 151 ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIFDE--VVFAEVSQTPDLKRIRREIADQLG--------LNF 219 (1497)
Q Consensus 151 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~--~~wv~vs~~~~~~~~~~~i~~~l~--------~~~ 219 (1497)
+++.|-.....-..|.|++|+||||+.+.+++-.... +.|-. +.-|+-+. +|+..+. ...
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 4444444555557899999999999999999876532 23422 22222111 2222111 111
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEEcCCCChhhhhhccCCCCCCCCCeEEEEEeCchhhh
Q 000447 220 CEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVL 280 (1497)
Q Consensus 220 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~ 280 (1497)
+-.+.--..+-+......-.+=.+|+|++...++-.++...+ ..|-+++.|..-..+.
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ie 256 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIE 256 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHH
Confidence 100000111222333333467789999999887665554443 3677777776544433
No 431
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.18 E-value=1.3 Score=49.18 Aligned_cols=53 Identities=26% Similarity=0.356 Sum_probs=35.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 216 (1497)
.-.++.|.|.+|+||||+|.+++..... .-..++|++... +.+++.+. +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~--~~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEE--SRESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccC--CHHHHHHH-HHHhC
Confidence 4468999999999999999998765432 235678887644 33444433 33343
No 432
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.18 E-value=0.39 Score=54.19 Aligned_cols=55 Identities=24% Similarity=0.176 Sum_probs=41.4
Q ss_pred CcccccchHHHHHH---HHHHHcCC--CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc
Q 000447 137 GHEFIESRESILND---ILDALRGP--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 191 (1497)
...+++|..+..+. +++++... .-+.|.|+|++|.|||+||..+++..-..-.|.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 34578887655433 56666643 457899999999999999999999987666663
No 433
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.16 E-value=0.23 Score=51.79 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 186 (1497)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 5679999999999999999999988763
No 434
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.11 E-value=0.33 Score=48.15 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
-.+|.+.|.-|+||||+++.+++...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998764
No 435
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.09 E-value=0.22 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+..+|+|+|++|+||||+|+.++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446999999999999999999999875
No 436
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.09 E-value=0.16 Score=52.01 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+|.|+|+.|+||||+|+.++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 437
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.07 E-value=1.2 Score=51.40 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=40.1
Q ss_pred HHHHHc-CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHH
Q 000447 151 ILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIA 212 (1497)
Q Consensus 151 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~ 212 (1497)
+++.+. -.+-..++|.|..|+|||+|++++++... -+.++++-+.+.. .+.+++.++-
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 444444 12334799999999999999999998642 3577888887654 3555665543
No 438
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.06 E-value=0.38 Score=56.49 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=33.6
Q ss_pred cccchHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHH
Q 000447 140 FIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARL 183 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 183 (1497)
.++|+...+.++.+.+. ...-.-|.|+|..|+||+++|+.+...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46787777777777665 223346889999999999999998754
No 439
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.03 E-value=1 Score=54.10 Aligned_cols=89 Identities=18% Similarity=0.301 Sum_probs=54.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC-HHHHHHHHHHHhCCC-------CCCCChHH----
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD-LKRIRREIADQLGLN-------FCEESDSE---- 226 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 226 (1497)
+-..++|+|..|+|||||++.+++... .+.++.+-+.+... +.++.++.+..-+.. ..+++...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999987653 24555566665543 445555444432211 11111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEcCCCCh
Q 000447 227 --RIMMLCNRLK-REKKILVILDDIWTS 251 (1497)
Q Consensus 227 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1497)
..-.+.+++. +++++|+++||+-.-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1223445553 489999999998443
No 440
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.03 E-value=0.75 Score=50.81 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=65.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-----CcCHHHHHHHHHHHhCCCC------CCCChHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-----TPDLKRIRREIADQLGLNF------CEESDSER 227 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~ 227 (1497)
+-.+++|||..|.||||+|+.+..-... -.+.++..-.. .....+-..++++..+... +.+-....
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3468999999999999999999976542 23344333111 2223445556666666432 11111122
Q ss_pred HHH--HHHHHhcCCeEEEEEcCCCChhhh------hhccCCCCCCCCCeEEEEEeCchhhhhh
Q 000447 228 IMM--LCNRLKREKKILVILDDIWTSLDL------ERTGIPFGDVHRGCKILVTSRRRDVLVS 282 (1497)
Q Consensus 228 ~~~--l~~~l~~~k~~LlVlDdv~~~~~~------~~l~~~l~~~~~gs~ilvTTR~~~v~~~ 282 (1497)
.++ +.+.+ .-++-++|.|+--+.-|. -.+...+ ....|-..+..|.+-.|...
T Consensus 115 rQRi~IARAL-al~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARAL-ALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHH-hhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhh
Confidence 222 23333 368899999985443211 1111111 12235568888888877774
No 441
>PRK12678 transcription termination factor Rho; Provisional
Probab=90.98 E-value=0.72 Score=56.22 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=49.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEE-EEecCCcCHHHHHHHHHHHhCCC----CCCCChH------HHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF-AEVSQTPDLKRIRREIADQLGLN----FCEESDS------ERIM 229 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~~l~~~----~~~~~~~------~~~~ 229 (1497)
....|+|++|+|||||++.+++.... .+-++.++ +-|.+..... .++.+.+... ....... ....
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987642 23344433 3445443221 2233333111 1111111 1222
Q ss_pred HHHHHHh-cCCeEEEEEcCCCCh
Q 000447 230 MLCNRLK-REKKILVILDDIWTS 251 (1497)
Q Consensus 230 ~l~~~l~-~~k~~LlVlDdv~~~ 251 (1497)
.+.+++. +++.+||++|++-..
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHH
Confidence 3344443 489999999998544
No 442
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=90.97 E-value=0.38 Score=49.04 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.0
Q ss_pred cCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000447 156 RGPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1497)
Q Consensus 156 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 186 (1497)
..++..||.+.|..|.||||+|.+++.....
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3456679999999999999999999998863
No 443
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=90.96 E-value=0.52 Score=61.66 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=36.1
Q ss_pred cccccchHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 138 HEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
...++|+...+.++.+.+. ...-.-|.|+|..|+|||++|+.+.+..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3457888877777766655 2333478999999999999999998764
No 444
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.95 E-value=0.18 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.+++|+|+.|+||||+|+.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 445
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.92 E-value=0.16 Score=52.30 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
++.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 446
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=90.88 E-value=0.19 Score=50.42 Aligned_cols=45 Identities=31% Similarity=0.485 Sum_probs=34.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF 219 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 219 (1497)
+|.|-|++|.||||+|+.++++..-+ .| +.-.+.++|++..+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987421 11 23367888888887753
No 447
>PRK13947 shikimate kinase; Provisional
Probab=90.88 E-value=0.18 Score=53.23 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
-|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998874
No 448
>PRK00279 adk adenylate kinase; Reviewed
Probab=90.84 E-value=0.86 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.|.|+|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999997753
No 449
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.84 E-value=0.18 Score=53.39 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 450
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.81 E-value=0.16 Score=55.16 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 451
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=90.81 E-value=1.2 Score=49.96 Aligned_cols=93 Identities=11% Similarity=0.169 Sum_probs=53.3
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHhccCCcceE-EEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH----
Q 000447 161 YMIGVYGMAGIGKTTLV-KEVARLAKEGRIFDEV-VFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE---- 226 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 226 (1497)
..++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. ++.++.+++.+.-... ..+++...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 46899999999999996 5555432 23444 566666654 4566666665432111 11111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEcCCCCh-hhhhhc
Q 000447 227 --RIMMLCNRLK-REKKILVILDDIWTS-LDLERT 257 (1497)
Q Consensus 227 --~~~~l~~~l~-~~k~~LlVlDdv~~~-~~~~~l 257 (1497)
..-.+.+++. +++++|||+||+-.- ..+.++
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1223344443 379999999998554 334444
No 452
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=90.80 E-value=0.58 Score=59.57 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=51.5
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000447 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1497)
...++|+++.++.+...+.... -+.++|++|+||||+|+.+++.... ..|..++++ .....+..++++.+...++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~-~~~~~~~~~-~n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPD-EELEDILVY-PNPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCc-hhheeEEEE-eCCCCCchHHHHHHHHhhch
Confidence 4567888888877777666543 5569999999999999999987642 233333322 23334556667777777664
No 453
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.78 E-value=0.17 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 454
>PTZ00185 ATPase alpha subunit; Provisional
Probab=90.76 E-value=1.3 Score=53.43 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=53.9
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHhc-----cCCcceEEEEEecCCcCHHHHHHHHHHHhC-CC-------CCCCChHH
Q 000447 161 YMIGVYGMAGIGKTTLV-KEVARLAKE-----GRIFDEVVFAEVSQTPDLKRIRREIADQLG-LN-------FCEESDSE 226 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-~~-------~~~~~~~~ 226 (1497)
..++|.|-.|+|||+|| -.+.+...+ .+.-+.++++-+.+..+...-+.+.+++-+ .. ...++...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46899999999999997 556665532 123456788888877654333444444433 11 11111111
Q ss_pred ------HHHHHHHHHh-cCCeEEEEEcCCCCh
Q 000447 227 ------RIMMLCNRLK-REKKILVILDDIWTS 251 (1497)
Q Consensus 227 ------~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1497)
..-.+.+++. +++++|+|+||+-.-
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1223344443 479999999998543
No 455
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=90.73 E-value=0.33 Score=56.74 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=39.2
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
...++|.++.+..++-.+.+....-+.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678999988888777777666778899999999999999998654
No 456
>PRK13949 shikimate kinase; Provisional
Probab=90.68 E-value=0.19 Score=52.70 Aligned_cols=24 Identities=46% Similarity=0.443 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.|.|+|+.|+||||+|+.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998874
No 457
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=90.68 E-value=0.3 Score=56.99 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=38.3
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+...++|+++.++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 456788999988887755544455569999999999999999998764
No 458
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=90.67 E-value=1.4 Score=53.17 Aligned_cols=91 Identities=21% Similarity=0.340 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH-----
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE----- 226 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 226 (1497)
-..++|.|..|+|||||+..++..... ++=+.++++-+.+.. .+.++++++...-... ..+++...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 346899999999999999999876642 222467777776654 4566777665432111 11122111
Q ss_pred -HHHHHHHHHh--cCCeEEEEEcCCCCh
Q 000447 227 -RIMMLCNRLK--REKKILVILDDIWTS 251 (1497)
Q Consensus 227 -~~~~l~~~l~--~~k~~LlVlDdv~~~ 251 (1497)
..-.+.+++. +++++||++||+-.-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2234556664 379999999998544
No 459
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=90.63 E-value=0.34 Score=55.78 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=36.5
Q ss_pred cccccchHHHHH---HHHHHHcCCC--eEEEEEEcCCCchHHHHHHHHHHHHhccCCc
Q 000447 138 HEFIESRESILN---DILDALRGPY--VYMIGVYGMAGIGKTTLVKEVARLAKEGRIF 190 (1497)
Q Consensus 138 ~~~~~gR~~~~~---~l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 190 (1497)
..+++|+.+..+ -+++++...+ -+.|.+.|++|.|||+||..+++....+-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 457888765543 3556666543 5789999999999999999999998655444
No 460
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=90.62 E-value=0.19 Score=51.11 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVA 181 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~ 181 (1497)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 461
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.62 E-value=0.38 Score=52.56 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=28.1
Q ss_pred HHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 153 DALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 153 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+.+.+.++++|+++|..|+|||||..++.+...
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344467899999999999999999999998753
No 462
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=90.61 E-value=0.53 Score=55.68 Aligned_cols=74 Identities=27% Similarity=0.401 Sum_probs=47.1
Q ss_pred cccchHHHHHHHHHHHcC--------------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc---ceEEEEEe-cCC
Q 000447 140 FIESRESILNDILDALRG--------------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF---DEVVFAEV-SQT 201 (1497)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v-s~~ 201 (1497)
.++|.++.++.+..++.. ...+-|.++|++|+|||++|+.++.... ..| |...|... ...
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~--~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC--ChheeecchhhccCCccc
Confidence 467888888777766631 0136789999999999999999998763 223 32222221 122
Q ss_pred cCHHHHHHHHHHHh
Q 000447 202 PDLKRIRREIADQL 215 (1497)
Q Consensus 202 ~~~~~~~~~i~~~l 215 (1497)
.+.+.+++.+....
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 35556666655443
No 463
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.57 E-value=0.58 Score=48.54 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=57.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHHHhc
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCEESDS-ERIMMLCNRLKR 237 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~-~~~~~l~~~l~~ 237 (1497)
.+++|+|..|.|||||++.++.... ...+.+++.-.... ...+.. ..++.-.. -+.. ...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~q-lS~G~~~r~~l~~~l~- 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELR----RRIGYVPQ-LSGGQRQRVALARALL- 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHH----hceEEEee-CCHHHHHHHHHHHHHh-
Confidence 6899999999999999999987543 34555554322111 111111 11111000 1111 12222344444
Q ss_pred CCeEEEEEcCCCChhh---hhhccCCCCC-CCCCeEEEEEeCchhhhh
Q 000447 238 EKKILVILDDIWTSLD---LERTGIPFGD-VHRGCKILVTSRRRDVLV 281 (1497)
Q Consensus 238 ~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~ilvTTR~~~v~~ 281 (1497)
..+-++++|+.-..-| ...+...+.. ...+..++++|.+.....
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4678899998754321 1112111111 112456888888776655
No 464
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=90.53 E-value=0.31 Score=50.22 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=26.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEE
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 196 (1497)
|++|+|+.|+||||++.++....+. +.+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 5899999999999999999998763 345444443
No 465
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.51 E-value=0.33 Score=55.28 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=41.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000447 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1497)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1497)
..-+++.|+|.+|+|||++|.++..... +....++||+..+. .+++.+.+.+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 4567999999999999999999998876 33788999987764 3444444433 443
No 466
>PRK14530 adenylate kinase; Provisional
Probab=90.38 E-value=0.21 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 467
>PRK08149 ATP synthase SpaL; Validated
Probab=90.37 E-value=1 Score=54.09 Aligned_cols=89 Identities=13% Similarity=0.236 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCC-------CCCCChH-----
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLN-------FCEESDS----- 225 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----- 225 (1497)
+-..++|+|..|+|||||++.++.... -+.++...+... .++.++..+........ ..+++..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 335789999999999999999986542 234444445443 34566666665543221 1111111
Q ss_pred -HHHHHHHHHHh-cCCeEEEEEcCCCCh
Q 000447 226 -ERIMMLCNRLK-REKKILVILDDIWTS 251 (1497)
Q Consensus 226 -~~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1497)
.....+.+++. ++|++||++||+-.-
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12223444553 489999999998543
No 468
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=90.35 E-value=0.22 Score=51.45 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 000447 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 469
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=90.26 E-value=1.4 Score=52.97 Aligned_cols=90 Identities=22% Similarity=0.351 Sum_probs=57.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC--Ccc---------eEEEEEecCCcCHHHHHHHHHHHhC-CC-------CCC
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR--IFD---------EVVFAEVSQTPDLKRIRREIADQLG-LN-------FCE 221 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~-------~~~ 221 (1497)
..++|.|-+|+|||||+..+++...... -.| .++++-+.+.....+.+.+.+..-+ .. ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4689999999999999999997764100 012 5667777877666666666665544 11 111
Q ss_pred CChHH------HHHHHHHHHh--cCCeEEEEEcCCCC
Q 000447 222 ESDSE------RIMMLCNRLK--REKKILVILDDIWT 250 (1497)
Q Consensus 222 ~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~~ 250 (1497)
++... ..-.+.+++. +++++|+++||+-.
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 11111 2233556666 47999999999843
No 470
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.25 E-value=1.2 Score=48.72 Aligned_cols=52 Identities=29% Similarity=0.277 Sum_probs=38.8
Q ss_pred cCCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 134 YNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
|......+.|-+..+++|-+... . ...+=|.++|.+|.|||-||++|+|.-.
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 33345566777777787777654 1 2356688999999999999999999764
No 471
>PRK14529 adenylate kinase; Provisional
Probab=90.18 E-value=0.82 Score=50.04 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=44.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCcce-EE-EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCe
Q 000447 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VV-FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~-wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1497)
|.|.|++|+||||+|+.++...... +.+. .+ .-.+.......+..++++.+-.. -.+.-....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l----vpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL----VPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc----chHHHHHHHHHHHHhccCC
Confidence 7889999999999999999887522 2211 11 11122222233333444332111 1222334445556654224
Q ss_pred EEEEEcCCCCh
Q 000447 241 ILVILDDIWTS 251 (1497)
Q Consensus 241 ~LlVlDdv~~~ 251 (1497)
.=+|||+.-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 45889987544
No 472
>PRK13975 thymidylate kinase; Provisional
Probab=90.14 E-value=0.25 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=23.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
.+|+|.|+.|+||||+|+.+++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999875
No 473
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.14 E-value=0.23 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+|+|.|..|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 474
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=0.07 Score=55.44 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=50.8
Q ss_pred cCcccccceeeccccccchhhhcCCCCcccccceeEEEEeeCCCCCCCCchhhhcCCCCccEEEeccCccchh
Q 000447 779 CNAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEE 851 (1497)
Q Consensus 779 ~~~f~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~L~~ 851 (1497)
...+++++.|.+.+|..+.+|+...... .+++|+.|+|++|+++++-. +..+..+++|+.|.+.+.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhhc
Confidence 3456777888888888888887655443 67888899998888888742 24566777777777777665543
No 475
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=89.90 E-value=0.62 Score=50.86 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=41.3
Q ss_pred CCcccccchHHHHH---HHHHHHcC--CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc
Q 000447 136 EGHEFIESRESILN---DILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1497)
Q Consensus 136 ~~~~~~~gR~~~~~---~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 191 (1497)
....+|+|.+...+ -+++++.. -.-+.+.+-|++|.|||+||-.+.+..-.+-.|-
T Consensus 35 ~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFc 95 (456)
T KOG1942|consen 35 EVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFC 95 (456)
T ss_pred ecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcc
Confidence 34567888765433 35565552 3457899999999999999999999987776664
No 476
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=89.87 E-value=0.38 Score=56.27 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=41.4
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
....++|.++.+..|...+.+.++.-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4567899999888888877787777788999999999999999987653
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.86 E-value=0.21 Score=53.18 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
++|+|+|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999999754
No 478
>PRK15453 phosphoribulokinase; Provisional
Probab=89.78 E-value=1.6 Score=49.03 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
+..+|+|.|.+|+||||+|+.+.+..+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999997664
No 479
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=89.75 E-value=0.18 Score=54.85 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARL 183 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~ 183 (1497)
.+++|+|+.|.||||+.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 78999999999999999999843
No 480
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.69 E-value=0.26 Score=54.11 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=58.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH-HhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----CChHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARL-AKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----ESDSERIMMLCN 233 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 233 (1497)
..+++.|.|+.|.||||+.+.++-- ...+ -.+.+|..-.. -.....|...++..... ..-.....++..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~--~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQ--IGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHh--CCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHH
Confidence 4468899999999999999998873 2211 11222221000 00011111111111110 111222333333
Q ss_pred HHhc-CCeEEEEEcCCCChh------h-hhhccCCCCCCCCCeEEEEEeCchhhhhh
Q 000447 234 RLKR-EKKILVILDDIWTSL------D-LERTGIPFGDVHRGCKILVTSRRRDVLVS 282 (1497)
Q Consensus 234 ~l~~-~k~~LlVlDdv~~~~------~-~~~l~~~l~~~~~gs~ilvTTR~~~v~~~ 282 (1497)
-+.. +++-|+++|+..... . -..+...+.. ..++.+|++|....++..
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 3332 579999999964321 1 0112222222 257889999999988763
No 481
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=89.69 E-value=0.66 Score=55.49 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000447 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1497)
Q Consensus 146 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 186 (1497)
...+.+++.+.......+.|.|.||+|||++.+++.+..+.
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 44566666666566678899999999999999999998863
No 482
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.67 E-value=0.96 Score=51.08 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=51.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1497)
+..+++++|.+|+||||+++.+......+. ..+.+++..... ...+-++...+.++.+.........+....+.+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 447999999999999999999987764221 234555543221 22222333444444332222233333444455543
Q ss_pred -CCeEEEEEcCCCCh
Q 000447 238 -EKKILVILDDIWTS 251 (1497)
Q Consensus 238 -~k~~LlVlDdv~~~ 251 (1497)
.+.-++|+|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24568888976433
No 483
>PHA02774 E1; Provisional
Probab=89.66 E-value=0.64 Score=56.98 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=34.1
Q ss_pred HHHHHHHHHcC-CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe
Q 000447 147 ILNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1497)
Q Consensus 147 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 198 (1497)
-+..+..++.. .+...+.|+|++|+|||.+|..+.+-.. -..+.||+.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEEC
Confidence 34455556553 3356899999999999999999998763 223456764
No 484
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=89.65 E-value=0.3 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 485
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=89.64 E-value=0.8 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+..|+|++|.||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 89999999999998888877766
No 486
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=89.62 E-value=1.6 Score=53.03 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=56.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcc--eEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCCh------
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD--EVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESD------ 224 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------ 224 (1497)
..++|.|-.|+|||||+..+++.......+. .++++-+.+.. .+.++++.+...-... ..+++.
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4689999999999999999998764321111 45666676554 4566666665432211 111111
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEcCCCCh
Q 000447 225 SERIMMLCNRLK--REKKILVILDDIWTS 251 (1497)
Q Consensus 225 ~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 251 (1497)
.-..-.+.+++. +++++||++||+-.-
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 112334566776 489999999998543
No 487
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=89.58 E-value=0.28 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 000447 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 161 ~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
..|.|+|+.|+||||+|+.+++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999999875
No 488
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.56 E-value=0.13 Score=56.79 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=79.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC---CC-hHHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE---ES-DSERIMMLCNR 234 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~-~~~~~~~l~~~ 234 (1497)
+.+++.|+|+.|.||||+.+.+..-.-. +..-.+|.... ........++..++..... .+ -.....++..-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 4679999999999999999987753110 00001221111 0001122222222222111 11 11122222222
Q ss_pred Hh-cCCeEEEEEcCC---CChhh-----hhhccCCCCCCCCCeEEEEEeCchhhhhhc--CcccceEEecCCCHH--HHH
Q 000447 235 LK-REKKILVILDDI---WTSLD-----LERTGIPFGDVHRGCKILVTSRRRDVLVSE--MHCQNNYCVSVLNKE--EAW 301 (1497)
Q Consensus 235 l~-~~k~~LlVlDdv---~~~~~-----~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~--~~~~~~~~l~~L~~~--e~~ 301 (1497)
+. -.++-|+++|+. -+..| |..+ ..+.. ..|+.+|+||...++.... .......++.....+ +..
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 21 157889999998 33322 2111 11211 3477899999977665521 111112222221111 111
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 000447 302 SLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLR 343 (1497)
Q Consensus 302 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 343 (1497)
.|..+....... ...|-++++.+ |+|-.|.--|..+.
T Consensus 182 -~~~Y~l~~G~~~---~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 182 -TMLYKVEKGACD---QSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred -eEEEEEeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 122222111111 23466777766 89988887776654
No 489
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=89.54 E-value=1.2 Score=53.96 Aligned_cols=91 Identities=21% Similarity=0.322 Sum_probs=57.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC--------------CCCCCh
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN--------------FCEESD 224 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~--------------~~~~~~ 224 (1497)
-..++|.|..|+|||+|+..+...... .+=+.++++-+.+.. .+.++...+...--.. ...++.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 346899999999999999998877431 112778888887665 4566776665521100 011111
Q ss_pred H------HHHHHHHHHHhc-C-CeEEEEEcCCCCh
Q 000447 225 S------ERIMMLCNRLKR-E-KKILVILDDIWTS 251 (1497)
Q Consensus 225 ~------~~~~~l~~~l~~-~-k~~LlVlDdv~~~ 251 (1497)
. -..-.+.+++.. + +++||++||+-.-
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 1 223345667753 4 4999999998544
No 490
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=89.53 E-value=0.63 Score=58.93 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=33.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC-CcceEEEEEecCCcCHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGR-IFDEVVFAEVSQTPDLKRIRREIA 212 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1497)
-++..|.|.+|+||||+++.+........ .-...+.+......-...+.+.+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 36899999999999999999887653211 112345554444444444444443
No 491
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.52 E-value=2.3 Score=47.81 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=36.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1497)
-.++.|.|.+|+|||++|.+++........ ..++|++... +.+++...+...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHHH
Confidence 358999999999999999999877653312 3566766554 556666666543
No 492
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.52 E-value=0.23 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 000447 163 IGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
|.|+|+.|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 493
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=89.50 E-value=0.34 Score=48.81 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999999888766
No 494
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=89.47 E-value=1.4 Score=51.02 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=51.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCC-------CCCCChHH-----
Q 000447 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLN-------FCEESDSE----- 226 (1497)
Q Consensus 160 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 226 (1497)
-..++|+|..|.|||||++.++.... -+..+..-+.. ..++.++.......-+.. ..+++...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999998887543 23334444443 334555555555432211 11121111
Q ss_pred -HHHHHHHHHh-cCCeEEEEEcCCCCh
Q 000447 227 -RIMMLCNRLK-REKKILVILDDIWTS 251 (1497)
Q Consensus 227 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1497)
..-.+.+++. ++|++||++||+-.-
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 1222334443 479999999998543
No 495
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=89.40 E-value=0.31 Score=50.98 Aligned_cols=23 Identities=48% Similarity=0.600 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 000447 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 163 i~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
|.|.|.+|+||||+++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999875
No 496
>PRK13695 putative NTPase; Provisional
Probab=89.38 E-value=0.44 Score=50.41 Aligned_cols=34 Identities=44% Similarity=0.581 Sum_probs=25.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEE
Q 000447 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1497)
Q Consensus 162 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 196 (1497)
.|+|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4789999999999999999987653 234434344
No 497
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.38 E-value=0.28 Score=53.18 Aligned_cols=117 Identities=16% Similarity=0.107 Sum_probs=57.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCC----hHHHHHHHHHH
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEES----DSERIMMLCNR 234 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~~l~~~ 234 (1497)
..+++.|.|+.|.||||+.+.++.-.--. ..-..|.... .. -.+.+.|...++....... -.....++..-
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34789999999999999999987542100 0011111100 00 1122223333322211100 01111122211
Q ss_pred Hh-cCCeEEEEEcCCCCh---hh----hhhccCCCCCCCCCeEEEEEeCchhhhhh
Q 000447 235 LK-REKKILVILDDIWTS---LD----LERTGIPFGDVHRGCKILVTSRRRDVLVS 282 (1497)
Q Consensus 235 l~-~~k~~LlVlDdv~~~---~~----~~~l~~~l~~~~~gs~ilvTTR~~~v~~~ 282 (1497)
+. ..++-|+++|+.... .+ ...+...+. ..|+.+|++|...+++..
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHH
Confidence 11 157889999997432 11 111212222 237889999999988774
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=89.36 E-value=0.37 Score=52.27 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.5
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
..+..+|+|+|++|+||||+|+.+.....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35667999999999999999999998764
No 499
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=89.29 E-value=0.52 Score=55.35 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000447 142 ESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1497)
Q Consensus 142 ~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 184 (1497)
+|+...+.++.+.+. ...-.-|.|+|..|+||+++|+.+.+..
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 455555555555544 2233458999999999999999998654
No 500
>PRK14527 adenylate kinase; Provisional
Probab=89.26 E-value=0.32 Score=52.45 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000447 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1497)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 185 (1497)
...+|.|+|++|+||||+|+.++++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998764
Done!