Query 000447
Match_columns 1497
No_of_seqs 575 out of 6669
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 16:50:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000447.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_225-229//hhsearch_pdb/000447hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 402.6 22.4 305 142-469 131-470 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 368.4 27.6 312 133-469 118-451 (1249)
3 3rgz_A Protein brassinosteroid 1.0 1 1 344.0 29.2 658 489-1333 51-765 (768)
4 1vt4_I APAF-1 related killer D 1.0 1 1 334.3 20.4 282 141-463 130-436 (1221)
5 3rgz_A Protein brassinosteroid 1.0 1 1 326.2 32.8 174 488-676 77-260 (768)
6 1z6t_A APAF-1, apoptotic prote 1.0 1 1 304.0 28.3 307 135-468 120-450 (591)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 303.3 38.3 175 491-679 7-187 (680)
8 1ziw_A TOLL-like receptor 3; i 1.0 1 1 292.8 40.0 183 477-673 15-205 (680)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 290.5 32.9 178 490-679 13-197 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 285.3 33.6 176 490-679 14-195 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=402.58 Aligned_cols=305 Identities=16% Similarity=0.146 Sum_probs=242.9
Q ss_pred CCHHHHHHHHHHHHCC---CCEEEEEEECCCCCHHHHHHHHHHH--HHHCCCCCCEEEEEEECCCC--CHHHHHHHHHHH
Q ss_conf 1169999999999739---9839999992797439999999999--97404786507999925796--989999999998
Q 000447 142 ESRESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVAR--LAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQ 214 (1497)
Q Consensus 142 ~gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~ 214 (1497)
+||++++++|.++|.. ...++|+|+||||+||||||+++|+ +.+++.+|+.++|+++++.. +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HCCCCC--------CCCHHHHHHHHHHHHHCCC-EEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHCCC
Q ss_conf 279878--------9994999999999983278-1999995988801010004888889987199998186023300186
Q 000447 215 LGLNFC--------EESDSERIMMLCNRLKREK-KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMH 285 (1497)
Q Consensus 215 l~~~~~--------~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~gskIiiTTR~~~v~~~~~~ 285 (1497)
++.... ..........+.+.+. ++ |+||||||||+.+++ .+ + ..+||+||||||++.++.. ++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~-~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNA-AS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGG-CC
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHH-CC----C-CCCCCEEEEECCCHHHHHH-CC
T ss_conf 853755345555331469999999999976-898489999799971441-54----3-2699889997497799997-08
Q ss_pred -CCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -4421990289988999999988289999940899999999993899199999999960899279999999987301586
Q 000447 286 -CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRFSARNF 364 (1497)
Q Consensus 286 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~ 364 (1497)
....+++++|+++|||+||.++++.....+++++++++|+++|+|+||||+++|+.++.+. |+.+ +.+....+..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~ 358 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESR 358 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH---HHHH-HHHHHHHHCC
T ss_conf 89738989998989999999987448998556899999999995998399999999844344---8999-8757876136
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHH-----------HHCCCCCCCCCCHHHHHHHCCCC--CCCCCH---HHHHHHH
Q ss_conf 5347888748999851579641023664-----------30125888983166675421255--643330---1099999
Q 000447 365 TGLEALLGSTIELIYNYLEGEELKLTFL-----------LCSLMKHPCDAPIMDLLKYGTGL--GLFEDI---YTMQERR 428 (1497)
Q Consensus 365 ~~~~~~~~~~l~~sy~~L~~~~lk~cfl-----------~~s~fp~~~~~~i~~li~~w~~~--g~~~~~---~~~~~~~ 428 (1497)
...++. .++.+||+.||++ +|.||+ |||+||+ ++.+. ++.|+|+ ||+... .+.++++
T Consensus 359 -~~~~i~-~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~--~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 -GLVGVE-CITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPP--GVDIP--VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp -CSSTTC-CCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCT--TCCEE--HHHHHHHSCC-------CCCTHHHH
T ss_pred -CHHHHH-HHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECC--CCEEE--EEEEEEECCCEECCCCCCCCHHHHH
T ss_conf -477789-8975162022679-999975265223367432356089--97666--5331101355002677899999999
Q ss_pred HHHHHHHHHHHHCCCCCCCC--CCCCEEEHHHHHHHHHHHHHC
Q ss_conf 99999999773024333579--867134003689999987301
Q 000447 429 DRVYALVRGLKDTCLLHDDD--TADWFSMLGFVRNVAISIASI 469 (1497)
Q Consensus 429 ~~~~~~l~~L~~~~ll~~~~--~~~~~~mHdlvr~~~~~~~~~ 469 (1497)
+ ++++|+++||++... ...+|+|||+||+||++++.+
T Consensus 432 ~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 432 D----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp H----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred H----HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 9----99999875883671479804999676999999999889
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=368.35 Aligned_cols=312 Identities=21% Similarity=0.254 Sum_probs=242.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHHHHHC-CCCC-CEEEEEEECCCCC--HHH
Q ss_conf 567774332116999999999973--998399999927974399999999999740-4786-5079999257969--899
Q 000447 133 SYNEGHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKE-GRIF-DEVVFAEVSQTPD--LKR 206 (1497)
Q Consensus 133 ~~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~--~~~ 206 (1497)
..+.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHH
T ss_conf 97999864125799999999998613588777999918988888999998607567886278817999978857267999
Q ss_pred HHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCHHH
Q ss_conf 99999998279878-----9994999999999983278--1999995988801010004888889987199998186023
Q 000447 207 IRREIADQLGLNFC-----EESDSERIMMLCNRLKREK--KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDV 279 (1497)
Q Consensus 207 ~~~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~gskIiiTTR~~~v 279 (1497)
.+..++..+..... ..........+...+. ++ |+||||||||+..+|+.+ ++|++||||||++.+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHH
T ss_conf 99999998655303334788777899999999973-5678789999567997788763-------689789999277899
Q ss_pred HHHCCCCCCEEEECC-CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 300186442199028-9988999999988289999940899999999993899199999999960899279999999987
Q 000447 280 LVSEMHCQNNYCVSV-LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1497)
Q Consensus 280 ~~~~~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~ 358 (1497)
+...++....+.+++ |+++|+++||...++.. .++.++.+++|+++|+|+||||+++|++|+.+. ..|+.+++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~ 346 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQ 346 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHH
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHH
T ss_conf 876348843798258888788999999865798--134838899999984997799999999862480-57999999986
Q ss_pred HHCCCC------CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 301586------53478887489998515796410236643012588898316667542125564333010999999999
Q 000447 359 FSARNF------TGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVY 432 (1497)
Q Consensus 359 ~~~~~~------~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~ 432 (1497)
...+.. .....+. .++.+||+.|+++ .|.||+|||+||+++.++...++.+|.+++ +...
T Consensus 347 ~~~~~~~~~~~~~~~~~~~-~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~ 412 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALD-EAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVE 412 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHH-HHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHH
T ss_pred HHHHHHCCCCCCCCHHHHH-HHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCCH------------HHHH
T ss_conf 5044303465564467799-9999899867999-999999728137997518999998858988------------8999
Q ss_pred HHHHHHHHCCCCCCCCCC--CCEEEHHHHHHHHHHHHHC
Q ss_conf 999977302433357986--7134003689999987301
Q 000447 433 ALVRGLKDTCLLHDDDTA--DWFSMLGFVRNVAISIASI 469 (1497)
Q Consensus 433 ~~l~~L~~~~ll~~~~~~--~~~~mHdlvr~~~~~~~~~ 469 (1497)
.++++|++++|++..... .+|+|||+||+|++..+.+
T Consensus 413 ~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 413 DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 999999744633896379811899668999998745067
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=344.02 Aligned_cols=658 Identities=15% Similarity=0.042 Sum_probs=289.6
Q ss_pred CCEEEECCCCCCCC----CCCCC-CCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEEECCCCCC-CCCC--CCCCCCCC
Q ss_conf 52189913578899----89966-79874289847999997789111349998509996286574-4795--58999988
Q 000447 489 NCIAIFLHDINTGE----LPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPS--SFCHLPNL 560 (1497)
Q Consensus 489 ~~r~Lsl~~~~~~~----l~~~~-~~~~Lr~L~L~~~~~~~~ip~~~f~~l~~LrvL~Ls~~~i~-~lp~--~i~~L~~L 560 (1497)
+++.+.+.+..+.. ++..+ .+++|+.+.+..+.. ..+|.. |..+++|++|+++++.+. .+|. .++.+.+|
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~-~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCE-EECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC-CCCCHH-HCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 278987789986775576696573168022467868886-787033-245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCC--C-CCCCCCCCCEEEEECCCCCCCC-HH---HCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf 8996438888897--3-4479888868980069885246-22---10879667895348999998592221599999899
Q 000447 561 ESLCLDQCILGDI--A-IIGNLKNLEILSLCCSDIEQLP-RE---IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEEL 633 (1497)
Q Consensus 561 r~L~L~~~~l~~l--~-~i~~L~~L~~L~Ls~~~i~~LP-~~---i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L 633 (1497)
++|++++|.+... . .++++.+|++|+++++.+...+ .. +..+++|++|++++|. +..... ++++++|++|
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L 205 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEFL 205 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCC-CCCCCC--CCCCCCCCEE
T ss_conf 9898968826774797785638899989897983588587155664358988989897880-346578--4547868989
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf 90187553312444422476470311899997689932268988882000013463169855534899998775302204
Q 000447 634 YLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLK 713 (1497)
Q Consensus 634 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~ 713 (1497)
++++|.+.+ .+..++.+++|+.|++..+.....
T Consensus 206 ~Ls~n~l~~------------~~~~l~~l~~L~~L~Ls~n~l~~~----------------------------------- 238 (768)
T 3rgz_A 206 DVSSNNFST------------GIPFLGDCSALQHLDISGNKLSGD----------------------------------- 238 (768)
T ss_dssp ECCSSCCCS------------CCCBCTTCCSCCEEECCSSCCCSC-----------------------------------
T ss_pred ECCCCCCCC------------CCCCCCCCCCCCEEECCCCCCCCC-----------------------------------
T ss_conf 892882788------------771112699999897948858781-----------------------------------
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 89854568999762012302346667844211123868875346000223576178414744212574556463513343
Q 000447 714 LPTNIYLDEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNL 793 (1497)
Q Consensus 714 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~l 793 (1497)
.+..+..+++|+.|++.++..... .+. ..+++|++|++.++.....++.... ..+++|+.|.+.++
T Consensus 239 ------~~~~l~~l~~L~~L~Ls~n~l~~~-~~~---~~l~~L~~L~L~~n~l~~~ip~~~~----~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 239 ------FSRAISTCTELKLLNISSNQFVGP-IPP---LPLKSLQYLSLAENKFTGEIPDFLS----GACDTLTGLDLSGN 304 (768)
T ss_dssp ------HHHHTTTCSSCCEEECCSSCCEES-CCC---CCCTTCCEEECCSSEEEESCCCCSC----TTCTTCSEEECCSS
T ss_pred ------CCHHHHCCCCCCEEECCCCCCCCC-CCC---CCCCCCCEEECCCCCCCCCCCHHHH----HHCCCCCEEECCCC
T ss_conf ------657774488889898988866571-672---4368789897917855772588888----44686889989689
Q ss_pred CCCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCC-
Q ss_conf 3302142377873233412199994079978777334431799712998613756023322588887688765542345-
Q 000447 794 IHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFG- 872 (1497)
Q Consensus 794 ~~L~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~fp- 872 (1497)
.--..+ +...+.+++|+.|.+.+|.-...++. ..+..+++|++|++.+|.-...++. .+..++
T Consensus 305 ~l~~~~---p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~------------~l~~l~~ 368 (768)
T 3rgz_A 305 HFYGAV---PPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPE------------SLTNLSA 368 (768)
T ss_dssp EEEECC---CGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCT------------THHHHTT
T ss_pred CCCCCC---CHHHHCCCCCCEEECCCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCCH------------HHHHHHC
T ss_conf 677842---36775587766778978852573797-8872488887884847843762309------------8986322
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 43267536787733212376787878999877654322455441201334543224799988777755643999824777
Q 000447 873 QLRSLILKFLPQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEK 952 (1497)
Q Consensus 873 ~L~~L~L~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~Le~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~C~~ 952 (1497)
+|+.|.+.++.--..++.. .....+++|+.|++.+|.+....... ...+++|+.|++++|.
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~--------------~~~~~~~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~- 429 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPN--------------LCQNPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNY- 429 (768)
T ss_dssp TCSEEECCSSEEEEECCTT--------------TTCSTTCCCCEEECCSSEEEEECCGG----GGGCTTCCEEECCSSE-
T ss_pred CCCEEECCCCCCCCCCCHH--------------HHHCCCCCCCEEECCCCCCCCCCCHH----HHCCCCCCEEECCCCC-
T ss_conf 7719986278747876766--------------65332477618989778465424877----7568987989895884-
Q ss_pred CCCCCCCHHHHHCCCCCEEEEEECCCCCEEECCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 33337713674102465699950365300002445755554000375450001579863400388643347775457760
Q 000447 953 IKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVY 1032 (1497)
Q Consensus 953 L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~psL~~L~i~ 1032 (1497)
++...| ..+..+++|+.|++++|. -...++.... .+++|+.|++.
T Consensus 430 l~~~~p-~~l~~l~~L~~L~L~~n~--------------------------------l~~~~p~~~~--~l~~L~~L~L~ 474 (768)
T 3rgz_A 430 LSGTIP-SSLGSLSKLRDLKLWLNM--------------------------------LEGEIPQELM--YVKTLETLILD 474 (768)
T ss_dssp EESCCC-GGGGGCTTCCEEECCSSC--------------------------------CCSCCCGGGG--GCTTCCEEECC
T ss_pred CCCCCC-HHHHCCCCCCEEECCCCC--------------------------------CCCCCCHHHC--CCCCCEEEEEC
T ss_conf 668546-777449988989897881--------------------------------5471897882--87773299901
Q ss_pred CCCCEEEECCCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 68730121245556887401100266533201335441466400341375542112357887665555199973289986
Q 000447 1033 GCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDN 1112 (1497)
Q Consensus 1033 ~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 1112 (1497)
+|.-...++.. ...+++|+.|+++++.+....+..+. .+++|+.|++++|.+..
T Consensus 475 ~N~l~~~~p~~------------------------l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 475 FNDLTGEIPSG------------------------LSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSG 528 (768)
T ss_dssp SSCCCSCCCGG------------------------GGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCEE
T ss_pred CCCCCCCCCHH------------------------HHCCCCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCCC
T ss_conf 99513758878------------------------81699899897539951896876885--68999989897894337
Q ss_pred CCHHHHHHCCCCCEEEEECCCEE-EEECCHHH----------------------------------------HHHCCCCC
Q ss_conf 51878831377538999903027-96022145----------------------------------------54106434
Q 000447 1113 FPICFLQYFKNLEKLELRWSSYK-QIFSYKEA----------------------------------------EKHAGKLT 1151 (1497)
Q Consensus 1113 ~~~~~l~~l~~L~~L~i~c~~l~-~l~~~~~~----------------------------------------~~~~~~l~ 1151 (1497)
.....+..+++|+.|+++.+.+. .++..-.. ......++
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 48877708898998989888468827957860421223201345421111344432222332221001355632320023
Q ss_pred CCCEEEECCCCCCCHHHCCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCC
Q ss_conf 21189708888871311149764000023433576215886534788744576459988347887434443545112344
Q 000447 1152 HIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQL 1231 (1497)
Q Consensus 1152 sL~~L~L~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L 1231 (1497)
.++.+.+.. ..+.+..+..+..+++|+.|+++++.-...+|..++.+++|+.|+++++. +....+. .+..+++|
T Consensus 609 ~~~~~~l~~----~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~-~l~~L~~L 682 (768)
T 3rgz_A 609 TRNPCNITS----RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND-ISGSIPD-EVGDLRGL 682 (768)
T ss_dssp GTCCSCTTS----CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC-CCSCCCG-GGGGCTTC
T ss_pred CCCCCCCCC----CEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC-CCCCCCH-HHHCCCCC
T ss_conf 211001133----10046274334033566579785880155587788414157878486880-3887896-78477789
Q ss_pred CEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 67878067420122125787664443223214111111222331039963113898448877157777456888878975
Q 000447 1232 MQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIFSTRESNTPK 1311 (1497)
Q Consensus 1232 ~~L~I~~C~~l~~i~~~~~~~~~~~~~~~sL~~L~L~~c~~L~~l~~~~~~~~~psL~~L~i~~Cp~l~~l~~~~~~~p~ 1311 (1497)
+.|+++++.-...+|. ....+++|+.|++++++--..+|.+.. +.++....+.++|.+--.|
T Consensus 683 ~~LdLs~N~l~g~ip~-------~l~~l~~L~~L~ls~N~l~g~iP~~~~---~~~~~~~~~~gN~~Lcg~~-------- 744 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQ-------AMSALTMLTEIDLSNNNLSGPIPEMGQ---FETFPPAKFLNNPGLCGYP-------- 744 (768)
T ss_dssp CEEECCSSCCEECCCG-------GGGGCCCCSEEECCSSEEEEECCSSSS---GGGSCGGGGCSCTEEESTT--------
T ss_pred CEEECCCCCCCCCCCH-------HHHCCCCCCEEECCCCCCCCCCCCCHH---HCCCCHHHHCCCCHHCCCC--------
T ss_conf 9898978802386886-------775788789787968815560899601---0248977756983210887--------
Q ss_pred CEEEEECCCCCCCCCCCCCHHH
Q ss_conf 1399904788865446990499
Q 000447 1312 LQEVRQNWGLDKGCWEGGLNAT 1333 (1497)
Q Consensus 1312 L~~~~~~~~~~~~~~~~~~~~~ 1333 (1497)
+. .|....+++|++++|....
T Consensus 745 l~-~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 745 LP-RCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp SC-CCCSCC-------------
T ss_pred CC-CCCCCCCCCCCCCCCCCCC
T ss_conf 76-7888766888988876566
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=334.30 Aligned_cols=282 Identities=19% Similarity=0.157 Sum_probs=218.2
Q ss_pred CCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCE-EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 21169999999999739-98399999927974399999999999740478650-79999257969899999999982798
Q 000447 141 IESRESILNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQTPDLKRIRREIADQLGLN 218 (1497)
Q Consensus 141 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (1497)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 78928999999999743589718999769996679999999971498874899389998289999999999999998622
Q ss_pred ---CC--CC---CHH----HHHHHHHHHHH--CCCEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHCC
Q ss_conf ---78--99---949----99999999983--278199999598880101000488888998719999818602330018
Q 000447 219 ---FC--EE---SDS----ERIMMLCNRLK--REKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEM 284 (1497)
Q Consensus 219 ---~~--~~---~~~----~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gskIiiTTR~~~v~~~~~ 284 (1497)
.. .. ... .....+...+. .++|+||||||||+.+.|+.+. +||+||||||++.++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-------CCEEEEEECCCHHHHHH-C
T ss_conf 721022001346799999999999999998504788799871868189998647-------98299994437379986-6
Q ss_pred CCCCEEEEC------CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--HHHHHHHHHH
Q ss_conf 644219902------89988999999988289999940899999999993899199999999960899--2799999999
Q 000447 285 HCQNNYCVS------VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKP--LFVWKKALQE 356 (1497)
Q Consensus 285 ~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~--~~~w~~~l~~ 356 (1497)
.....++++ +|+++|||+||.++.+.. . .++..++ |+|+||||+++|+.|+.+. ...|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC--H---HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC---
T ss_conf 897089946865568969999999999974998--8---9999999---6989999999999984889979998669---
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCH-HHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8730158653478887489998515796410-236643012588898316667542125564333010999999999999
Q 000447 357 LRFSARNFTGLEALLGSTIELIYNYLEGEEL-KLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALV 435 (1497)
Q Consensus 357 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l 435 (1497)
....+. .+|++||+.|+++ . |.||+|||+||+++.++...++.+|.++|. ++ ...++
T Consensus 351 ---------~~~~I~-aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~L 408 (1221)
T 1vt4_I 351 ---------NCDKLT-TIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVVV 408 (1221)
T ss_dssp ---------SCHHHH-HHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHHH
T ss_pred ---------CHHHHH-HHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-------HH----HHHHH
T ss_conf ---------861899-9999999848899-99999999717799998779999987667788-------99----99999
Q ss_pred HHHHHCCCCCCCCCCCCEEEHHHHHHHH
Q ss_conf 9773024333579867134003689999
Q 000447 436 RGLKDTCLLHDDDTADWFSMLGFVRNVA 463 (1497)
Q Consensus 436 ~~L~~~~ll~~~~~~~~~~mHdlvr~~~ 463 (1497)
++|+++||++..+....|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 9999619889868999898609999985
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=326.20 Aligned_cols=174 Identities=19% Similarity=0.176 Sum_probs=100.6
Q ss_pred CCCEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCC--HHHCCCCCCCEEEECCCCCC-CCCCCC-CCCCCCCE
Q ss_conf 35218991357889989966-798742898479999977891--11349998509996286574-479558-99998889
Q 000447 488 KNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPD--NFFAGMPKLRVLVLTRMKLL-TLPSSF-CHLPNLES 562 (1497)
Q Consensus 488 ~~~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~L~~~~~~~~ip~--~~f~~l~~LrvL~Ls~~~i~-~lp~~i-~~L~~Lr~ 562 (1497)
+.++.+.+..+.+..++..+ .+++|++|++++|...+.+|. . +.++++|++|++++|.+. ..|..+ .++.+|++
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG-GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHH-HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCE
T ss_conf 802246786888678703324578899898989857870789678-7278899989896882677479778563889998
Q ss_pred EECCCCCCCCC--CC---CCCCCCCCEEEEECCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECC
Q ss_conf 96438888897--34---47988886898006988524622108796678953489999985922215999998999018
Q 000447 563 LCLDQCILGDI--AI---IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGN 637 (1497)
Q Consensus 563 L~L~~~~l~~l--~~---i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 637 (1497)
|++++|.+... .. ++++.+|++|+++++.+.... .+..+++|++|++++|.....+|. ++++++|++|++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISG 232 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCS
T ss_pred EECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCC
T ss_conf 989798358858715566435898898989788034657-845478689898928827887711--12699999897948
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCC
Q ss_conf 755331244442247647031189999768993226898
Q 000447 638 TSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAV 676 (1497)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 676 (1497)
|.+. ...+..++.+++|+.|++..+...
T Consensus 233 n~l~-----------~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 233 NKLS-----------GDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp SCCC-----------SCHHHHTTTCSSCCEEECCSSCCE
T ss_pred CCCC-----------CCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 8587-----------816577744888898989888665
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=304.05 Aligned_cols=307 Identities=23% Similarity=0.287 Sum_probs=228.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHHHHHC-CCCC-CEEEEEEECCCCCHHHHHHH
Q ss_conf 7774332116999999999973--998399999927974399999999999740-4786-50799992579698999999
Q 000447 135 NEGHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKE-GRIF-DEVVFAEVSQTPDLKRIRRE 210 (1497)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~~~~~~~~ 210 (1497)
+.....|+||+.+++++.+++. .+..++|+|+||||+||||||++++++.++ +.+| +.++|++++.. +...+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHHH
T ss_conf 99987140529999999999860368884699976998988999999983556888528996599977877-66889999
Q ss_pred ---HHHHHCCC-----CCCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCHHHHH
Q ss_conf ---99982798-----7899949999999999832-78199999598880101000488888998719999818602330
Q 000447 211 ---IADQLGLN-----FCEESDSERIMMLCNRLKR-EKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1497)
Q Consensus 211 ---i~~~l~~~-----~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gskIiiTTR~~~v~~ 281 (1497)
++..++.. ............+...+.. .+++|||+||+|+...++.+ .+|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCCHHHH
T ss_conf 99999985035565567998899999999999706799869998589987999876-------37986999898817777
Q ss_pred HCCCCCCEEEE---CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 01864421990---289988999999988289999940899999999993899199999999960899279999999987
Q 000447 282 SEMHCQNNYCV---SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1497)
Q Consensus 282 ~~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~ 358 (1497)
. +. ...+++ ++|+++|+++||...++.. .....+.+.+|+++|+|+|+||+++|+.++.+.. .|+.++..+.
T Consensus 272 ~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~-~w~~~l~~l~ 346 (591)
T 1z6t_A 272 S-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQ 346 (591)
T ss_dssp T-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred H-CC-CCCEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_conf 3-48-9826861588999899999999871898--3104599999999958983799999999844843-5999999998
Q ss_pred HHCCC------CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 30158------653478887489998515796410236643012588898316667542125564333010999999999
Q 000447 359 FSARN------FTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVY 432 (1497)
Q Consensus 359 ~~~~~------~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~ 432 (1497)
..... ......+. .++..||+.|+++ .|.||++||+||++++++...+...|.+.+ ++ ..
T Consensus 347 ~~~~~~~~~~~~~~~~~l~-~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~----~~ 412 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALD-EAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------EE----VE 412 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHH-HHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HH----HH
T ss_pred HHHHHHHHHCCCCCHHHHH-HHHHHHHHHCCHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCCH--------HH----HH
T ss_conf 8689876511465437899-9999999868999-999999745567998508999999966588--------99----99
Q ss_pred HHHHHHHHCCCCCCCC--CCCCEEEHHHHHHHHHHHHH
Q ss_conf 9999773024333579--86713400368999998730
Q 000447 433 ALVRGLKDTCLLHDDD--TADWFSMLGFVRNVAISIAS 468 (1497)
Q Consensus 433 ~~l~~L~~~~ll~~~~--~~~~~~mHdlvr~~~~~~~~ 468 (1497)
.++++|++++|++... ....|+||+++|++++....
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 99999985958688548985679976899999986535
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=303.25 Aligned_cols=175 Identities=22% Similarity=0.254 Sum_probs=126.1
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 189913578899899667987428984799999778911134999850999628657447-9558999988899643888
Q 000447 491 IAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQCI 569 (1497)
Q Consensus 491 r~Lsl~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~ip~~~f~~l~~LrvL~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 569 (1497)
+.+..++..+..+|..+ .+++++|++++|.. ..++...|.++++|++|+++++.+..+ |..+..+.+|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCC-CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCCCCCC-CCCCCEEECCCCCC-CCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 74487779805264124-88876888989977-87597887178767588788996485697787406676888899985
Q ss_pred CCCC--CCCCCCCCCCEEEEECCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 8897--34479888868980069885246-22108796678953489999985922215999998999018755331244
Q 000447 570 LGDI--AIIGNLKNLEILSLCCSDIEQLP-REIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEG 646 (1497)
Q Consensus 570 l~~l--~~i~~L~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 646 (1497)
+..+ ..++++.+|++|+++++.+..+| ..++.+++|++|++++|. +...+.+.++++++|++|++++|.+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~---- 159 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQA---- 159 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCC----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCCCCCCEEECCCCCCCC----
T ss_conf 675685453038888989898996685396674156788889898995-246672111245567779745884365----
Q ss_pred CCCCCCCCCHHHC--CCCCCCCEEEEECCCCCCCC
Q ss_conf 4422476470311--89999768993226898888
Q 000447 647 LNLERNNASLQEL--SILSHLTTLEIHIRDAVILP 679 (1497)
Q Consensus 647 ~~~~~~~~~~~~L--~~L~~L~~L~l~~~~~~~~~ 679 (1497)
.....+ ..+++|+.|++..+.....+
T Consensus 160 -------~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 160 -------LKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp -------BCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred -------CCHHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf -------2978862446663217988898256558
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=292.78 Aligned_cols=183 Identities=24% Similarity=0.273 Sum_probs=130.5
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCC-C-CCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCC-C
Q ss_conf 433479700013521899135788998996-6-798742898479999977891113499985099962865744795-5
Q 000447 477 ALIEWPNKDMLKNCIAIFLHDINTGELPEG-L-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-S 553 (1497)
Q Consensus 477 ~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~-~-~~~~Lr~L~L~~~~~~~~ip~~~f~~l~~LrvL~Ls~~~i~~lp~-~ 553 (1497)
+...+|. ....+++++.+.++.+..++.. + ++++|++|++++|......| ..|.++++|++|+++++.+..+|. .
T Consensus 15 ~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 15 KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp CCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCC-CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCHHH
T ss_conf 8052641-248887688898997787597887178767588788996485697-78740667688889998567568545
Q ss_pred CCCCCCCCEEECCCCCCCCC--CCCCCCCCCCEEEEECCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCHHHHC--CCC
Q ss_conf 89999888996438888897--3447988886898006988524-622108796678953489999985922215--999
Q 000447 554 FCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQL-PREIGELTQLKLLDLSNCSKLKVIPPNVIS--SLS 628 (1497)
Q Consensus 554 i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~~i~--~L~ 628 (1497)
|..+.+|++|++++|.+..+ ..++++.+|++|+++++.+... |..++.+++|++|++++|. +..++...+. .++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANS 171 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTC
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHHHCCCCC
T ss_conf 3038888989898996685396674156788889898995246672111245567779745884-365297886244666
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECC
Q ss_conf 998999018755331244442247647031189999768993226
Q 000447 629 QLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIR 673 (1497)
Q Consensus 629 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 673 (1497)
+|++|++++|.+. ......+..+.+|+.|.+..+
T Consensus 172 ~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 172 SLKKLELSSNQIK-----------EFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp EESEEECTTCCCC-----------CBCTTGGGGSSEECEEECTTC
T ss_pred CCCEEECCCCCCC-----------CCCHHHHHHHHHHHHHHCCCC
T ss_conf 3217988898256-----------558155532234455430566
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=290.55 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=125.8
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 2189913578899899667987428984799999778911134999850999628657447-955899998889964388
Q 000447 490 CIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQC 568 (1497)
Q Consensus 490 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~ip~~~f~~l~~LrvL~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 568 (1497)
-+.+...+..+..+|..+ .++++.|++++|... .++...|.++++|++|+++++.+..+ |..|..+.+|++|+|++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCEECCCCCCCCCCCCC-CCCCCEEECCCCCCC-EECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCC
T ss_conf 970574688845189888-887678878889757-737545557766748868877366439777306010688678798
Q ss_pred CCCCC--CCCCCCCCCCEEEEECCCCCCCC-HHHCCCCCCCEEECCCCCCCC--CCCHHHHCCCCCCCEEEECCCCCCCC
Q ss_conf 88897--34479888868980069885246-221087966789534899999--85922215999998999018755331
Q 000447 569 ILGDI--AIIGNLKNLEILSLCCSDIEQLP-REIGELTQLKLLDLSNCSKLK--VIPPNVISSLSQLEELYLGNTSVEWE 643 (1497)
Q Consensus 569 ~l~~l--~~i~~L~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~ 643 (1497)
.+..+ ..++++.+|++|++++|.+..+| ..++.+++|++|++++|. +. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCEECHHH-HHHCCCCCEEECCCCCCEEC
T ss_conf 5630485220786537888703775554451134898877989687885-232530686-73267777887668853105
Q ss_pred CCCCCCCCCCCCHHHCCCCCC-CCEEEEECCCCCCCC
Q ss_conf 244442247647031189999-768993226898888
Q 000447 644 FEGLNLERNNASLQELSILSH-LTTLEIHIRDAVILP 679 (1497)
Q Consensus 644 ~~~~~~~~~~~~~~~L~~L~~-L~~L~l~~~~~~~~~ 679 (1497)
.+ ..+..+.+++. +..|++..+....++
T Consensus 169 ~~--------~~~~~l~~L~~~l~~L~l~~n~l~~~~ 197 (606)
T 3vq2_A 169 TV--------NDLQFLRENPQVNLSLDMSLNPIDFIQ 197 (606)
T ss_dssp CT--------TTTHHHHHCTTCCCEEECTTCCCCEEC
T ss_pred CH--------HHHHHHHCCCCCCCEEECCCCCCCEEC
T ss_conf 73--------341212034200243004689753257
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=285.33 Aligned_cols=176 Identities=18% Similarity=0.144 Sum_probs=133.4
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 2189913578899899667987428984799999778911134999850999628657447-955899998889964388
Q 000447 490 CIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQC 568 (1497)
Q Consensus 490 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~ip~~~f~~l~~LrvL~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 568 (1497)
.+.+...+..+..+|..+ ..+++.|++++|......|. .|.++++|++|++++|.+..+ |..|..+.+|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCHH-HHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCC
T ss_conf 723777779806286778-98675898158734717966-7256766528978898355248511368433676448898
Q ss_pred CCCCC--CCCCCCCCCCEEEEECCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCC
Q ss_conf 88897--3447988886898006988524-62210879667895348999998592221599999899901875533124
Q 000447 569 ILGDI--AIIGNLKNLEILSLCCSDIEQL-PREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFE 645 (1497)
Q Consensus 569 ~l~~l--~~i~~L~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 645 (1497)
.+..+ ..++++.+|++|+++++.+..+ |..++.+++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~---- 166 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH---- 166 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC----
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCC----
T ss_conf 5654586552344215376521267665781012237822389887983-41147654568765687776568445----
Q ss_pred CCCCCCCCCCHHHCCCCCCCC--EEEEECCCCCCCC
Q ss_conf 444224764703118999976--8993226898888
Q 000447 646 GLNLERNNASLQELSILSHLT--TLEIHIRDAVILP 679 (1497)
Q Consensus 646 ~~~~~~~~~~~~~L~~L~~L~--~L~l~~~~~~~~~ 679 (1497)
......++.+++|+ .|++..+.....+
T Consensus 167 -------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 167 -------YLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp -------EECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred -------CCCHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf -------54965633221564038966798147548
Done!