Query 000448
Match_columns 1497
No_of_seqs 663 out of 3066
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1473 Nucleosome remodeling 100.0 3.2E-34 7E-39 351.8 22.2 271 1113-1426 408-701 (1414)
2 KOG0850 Transcription factor D 99.6 2.2E-15 4.7E-20 162.6 11.1 82 18-99 108-189 (245)
3 KOG0485 Transcription factor N 99.6 3E-15 6.6E-20 159.1 10.0 64 29-92 101-164 (268)
4 KOG0484 Transcription factor P 99.5 4.1E-15 9E-20 141.7 3.3 65 29-93 14-78 (125)
5 KOG0488 Transcription factor B 99.5 3E-14 6.5E-19 165.4 10.3 65 30-94 170-234 (309)
6 KOG0842 Transcription factor t 99.5 6.1E-14 1.3E-18 160.2 9.3 65 29-93 150-214 (307)
7 KOG0489 Transcription factor z 99.5 3.5E-14 7.5E-19 162.2 6.5 70 27-96 154-223 (261)
8 PF02791 DDT: DDT domain; Int 99.4 1.9E-13 4.1E-18 122.8 5.6 60 541-600 1-61 (61)
9 KOG0492 Transcription factor M 99.4 2.5E-13 5.5E-18 144.0 4.3 67 30-96 142-208 (246)
10 KOG0487 Transcription factor A 99.4 5E-13 1.1E-17 152.9 5.9 64 29-92 232-295 (308)
11 KOG0843 Transcription factor E 99.4 3.4E-13 7.5E-18 140.9 4.1 63 31-93 101-163 (197)
12 KOG2251 Homeobox transcription 99.3 1.9E-12 4.1E-17 139.8 7.8 67 28-94 33-99 (228)
13 smart00571 DDT domain in diffe 99.3 1.8E-12 3.9E-17 117.2 5.5 58 542-599 2-62 (63)
14 KOG0848 Transcription factor C 99.3 9.3E-13 2E-17 144.3 3.1 67 28-94 195-261 (317)
15 KOG0494 Transcription factor C 99.3 1.6E-12 3.6E-17 141.4 4.7 61 33-93 142-202 (332)
16 KOG0844 Transcription factor E 99.3 3.3E-12 7.2E-17 141.6 6.5 62 30-91 179-240 (408)
17 PF00046 Homeobox: Homeobox do 99.3 3.1E-12 6.8E-17 112.8 3.9 57 33-89 1-57 (57)
18 KOG1029 Endocytic adaptor prot 99.2 7.1E-10 1.5E-14 134.9 24.2 27 548-577 471-497 (1118)
19 KOG3802 Transcription factor O 99.2 3.7E-11 8.1E-16 139.8 7.9 62 31-92 293-354 (398)
20 KOG4577 Transcription factor L 99.1 9.4E-11 2E-15 129.5 9.4 68 31-98 166-233 (383)
21 TIGR01565 homeo_ZF_HD homeobox 99.1 5.7E-11 1.2E-15 105.2 5.4 53 32-84 1-57 (58)
22 KOG0491 Transcription factor B 99.1 2E-11 4.3E-16 125.7 2.2 65 31-95 99-163 (194)
23 KOG0493 Transcription factor E 99.1 4.6E-11 9.9E-16 130.4 3.6 58 32-89 246-303 (342)
24 smart00389 HOX Homeodomain. DN 99.1 1.4E-10 3E-15 101.7 4.5 56 33-88 1-56 (56)
25 KOG1245 Chromatin remodeling c 99.0 1.9E-09 4.2E-14 144.8 16.5 57 934-990 651-707 (1404)
26 cd00086 homeodomain Homeodomai 99.0 2.3E-10 5.1E-15 101.0 4.6 57 33-89 1-57 (59)
27 KOG0486 Transcription factor P 99.0 1.6E-10 3.5E-15 129.9 4.1 64 30-93 110-173 (351)
28 PF15613 WHIM2: WSTF, HB1, Itc 99.0 2.4E-10 5.2E-15 92.5 3.8 37 1116-1152 1-37 (38)
29 COG5576 Homeodomain-containing 99.0 3.6E-10 7.8E-15 119.4 5.6 64 30-93 49-112 (156)
30 KOG0483 Transcription factor H 98.9 5.6E-10 1.2E-14 121.7 3.7 61 31-91 49-109 (198)
31 KOG0847 Transcription factor, 98.9 4.8E-10 1E-14 119.9 2.2 65 28-92 163-227 (288)
32 PF15614 WHIM3: WSTF, HB1, Itc 98.8 3.5E-09 7.6E-14 88.7 3.8 35 1155-1189 1-36 (46)
33 KOG0490 Transcription factor, 98.7 2.3E-08 4.9E-13 112.2 7.1 64 29-92 57-120 (235)
34 KOG0849 Transcription factor P 98.6 1.5E-07 3.3E-12 112.3 10.0 67 29-95 173-239 (354)
35 KOG1029 Endocytic adaptor prot 98.5 3.6E-05 7.7E-10 95.2 27.2 15 293-307 271-285 (1118)
36 PF15612 WHIM1: WSTF, HB1, Itc 98.4 2.5E-07 5.5E-12 80.0 4.4 48 934-981 3-50 (50)
37 KOG1168 Transcription factor A 98.4 9.3E-08 2E-12 106.3 1.9 63 28-90 305-367 (385)
38 KOG0775 Transcription factor S 98.3 1.8E-06 4E-11 96.3 8.1 50 40-89 184-233 (304)
39 PTZ00121 MAEBL; Provisional 98.2 6.2E-05 1.3E-09 98.0 21.1 14 1336-1349 1993-2006(2084)
40 PTZ00121 MAEBL; Provisional 98.2 0.0001 2.2E-09 96.1 21.6 14 1331-1344 2000-2013(2084)
41 KOG0774 Transcription factor P 98.1 4.1E-06 8.8E-11 92.5 7.5 60 32-91 188-250 (334)
42 PTZ00266 NIMA-related protein 98.1 0.00013 2.9E-09 96.7 20.4 9 173-181 232-240 (1021)
43 KOG4364 Chromatin assembly fac 97.7 0.0013 2.8E-08 81.2 18.9 21 61-81 39-59 (811)
44 PF05066 HARE-HTH: HB1, ASXL, 97.7 1.7E-05 3.7E-10 73.8 2.4 68 723-792 1-72 (72)
45 KOG4364 Chromatin assembly fac 97.6 0.0046 9.9E-08 76.6 21.1 19 419-437 314-332 (811)
46 PF05920 Homeobox_KN: Homeobox 97.3 9E-05 2E-09 61.5 1.0 34 53-86 7-40 (40)
47 KOG2252 CCAAT displacement pro 97.2 0.00037 8E-09 85.2 4.8 58 30-87 418-475 (558)
48 PF05672 MAP7: MAP7 (E-MAP-115 97.0 0.099 2.1E-06 56.6 21.2 10 325-334 12-21 (171)
49 KOG2891 Surface glycoprotein [ 97.0 0.066 1.4E-06 60.6 20.0 21 348-368 276-296 (445)
50 KOG0490 Transcription factor, 97.0 0.00057 1.2E-08 76.9 3.9 65 28-92 149-213 (235)
51 KOG2891 Surface glycoprotein [ 96.9 0.053 1.1E-06 61.3 18.1 21 175-195 191-213 (445)
52 KOG1146 Homeobox protein [Gene 96.3 0.0044 9.6E-08 82.2 5.8 63 29-91 900-962 (1406)
53 KOG1144 Translation initiation 96.3 0.086 1.9E-06 66.9 16.2 11 866-876 556-566 (1064)
54 KOG0163 Myosin class VI heavy 95.4 0.29 6.2E-06 62.0 15.4 24 561-584 1065-1089(1259)
55 PF05262 Borrelia_P83: Borreli 95.4 0.57 1.2E-05 58.6 18.3 45 162-206 19-69 (489)
56 PF05672 MAP7: MAP7 (E-MAP-115 95.3 1.2 2.6E-05 48.5 17.9 26 342-368 18-43 (171)
57 KOG0163 Myosin class VI heavy 95.2 1 2.2E-05 57.3 19.4 7 652-658 1181-1187(1259)
58 PF05262 Borrelia_P83: Borreli 94.3 1.3 2.9E-05 55.5 17.6 6 170-175 108-113 (489)
59 KOG1924 RhoA GTPase effector D 93.7 0.26 5.6E-06 62.8 9.7 9 631-639 839-847 (1102)
60 KOG0579 Ste20-like serine/thre 93.5 31 0.00066 44.5 26.9 16 172-187 623-638 (1187)
61 KOG2072 Translation initiation 93.5 8.4 0.00018 50.4 22.2 11 189-199 395-405 (988)
62 COG3064 TolA Membrane protein 92.7 9.1 0.0002 45.1 19.1 12 651-662 312-323 (387)
63 KOG2412 Nuclear-export-signal 91.9 2 4.3E-05 53.6 13.5 14 168-181 29-42 (591)
64 KOG2412 Nuclear-export-signal 91.7 2.1 4.6E-05 53.3 13.6 15 648-662 521-535 (591)
65 KOG3054 Uncharacterized conser 91.3 3.2 6.9E-05 47.1 13.2 25 553-577 201-226 (299)
66 KOG1924 RhoA GTPase effector D 91.1 0.63 1.4E-05 59.5 8.5 10 150-159 570-579 (1102)
67 COG3064 TolA Membrane protein 90.8 21 0.00047 42.1 19.5 6 653-658 352-357 (387)
68 KOG3654 Uncharacterized CH dom 89.7 64 0.0014 40.4 23.1 27 634-666 625-651 (708)
69 KOG3623 Homeobox transcription 89.5 0.5 1.1E-05 60.0 5.7 50 44-93 568-617 (1007)
70 PF11569 Homez: Homeodomain le 89.2 0.17 3.6E-06 45.2 1.0 42 44-85 10-51 (56)
71 KOG3054 Uncharacterized conser 88.9 3.3 7.2E-05 46.9 10.9 8 742-749 276-283 (299)
72 KOG0742 AAA+-type ATPase [Post 88.4 75 0.0016 39.4 25.3 7 721-727 392-398 (630)
73 PRK00106 hypothetical protein; 88.2 40 0.00086 43.4 21.2 12 954-965 431-442 (535)
74 KOG0742 AAA+-type ATPase [Post 87.8 75 0.0016 39.4 21.7 19 964-982 599-617 (630)
75 TIGR03319 YmdA_YtgF conserved 87.1 44 0.00095 43.0 20.8 16 582-597 255-270 (514)
76 KOG0773 Transcription factor M 86.3 0.5 1.1E-05 56.9 3.1 58 32-89 239-299 (342)
77 TIGR03319 YmdA_YtgF conserved 85.4 1.2E+02 0.0025 39.3 23.3 10 956-965 412-421 (514)
78 PRK12704 phosphodiesterase; Pr 85.1 53 0.0012 42.3 20.2 13 563-575 279-291 (520)
79 PRK12704 phosphodiesterase; Pr 84.9 1.2E+02 0.0026 39.1 23.2 13 585-597 264-276 (520)
80 KOG2072 Translation initiation 79.5 1.9E+02 0.0041 38.8 21.4 12 31-42 140-151 (988)
81 PRK00247 putative inner membra 77.3 28 0.00061 43.5 13.3 16 172-187 117-132 (429)
82 PF00769 ERM: Ezrin/radixin/mo 74.2 1.4E+02 0.003 34.9 17.2 12 686-697 225-236 (246)
83 KOG2507 Ubiquitin regulatory p 73.1 18 0.00039 44.3 9.8 11 242-252 73-83 (506)
84 KOG0579 Ste20-like serine/thre 72.7 3.2E+02 0.0068 36.0 22.2 9 807-815 1066-1074(1187)
85 KOG4849 mRNA cleavage factor I 72.6 1E+02 0.0022 37.1 15.4 11 129-139 213-223 (498)
86 KOG1984 Vesicle coat complex C 71.6 1.2E+02 0.0027 40.6 17.2 47 1356-1406 807-854 (1007)
87 PF07946 DUF1682: Protein of u 71.1 11 0.00024 45.4 7.7 9 74-82 30-38 (321)
88 PF07946 DUF1682: Protein of u 70.2 15 0.00032 44.4 8.4 6 201-206 126-131 (321)
89 PF06637 PV-1: PV-1 protein (P 69.0 84 0.0018 38.4 13.9 10 566-575 416-425 (442)
90 KOG2689 Predicted ubiquitin re 65.6 66 0.0014 37.8 11.8 7 467-473 169-175 (290)
91 PF04218 CENP-B_N: CENP-B N-te 64.2 7.8 0.00017 34.4 3.4 46 33-83 1-46 (53)
92 COG4942 Membrane-bound metallo 63.7 3.5E+02 0.0077 34.0 18.2 9 641-649 409-417 (420)
93 TIGR01069 mutS2 MutS2 family p 58.1 2.4E+02 0.0051 38.4 16.9 17 556-572 691-707 (771)
94 KOG3654 Uncharacterized CH dom 57.2 58 0.0012 40.8 9.9 17 581-597 508-524 (708)
95 PF09756 DDRGK: DDRGK domain; 56.9 3.6 7.8E-05 45.8 0.0 40 553-597 100-140 (188)
96 PF09726 Macoilin: Transmembra 56.6 6.5E+02 0.014 34.0 20.5 13 62-74 152-164 (697)
97 PRK00409 recombination and DNA 56.4 1.5E+02 0.0032 40.4 14.7 18 556-573 702-719 (782)
98 KOG2507 Ubiquitin regulatory p 55.1 97 0.0021 38.4 11.3 11 566-576 366-376 (506)
99 PF02029 Caldesmon: Caldesmon; 54.8 52 0.0011 41.9 9.5 11 567-577 389-399 (492)
100 PTZ00491 major vault protein; 54.7 3.6E+02 0.0077 36.7 17.1 6 175-180 421-426 (850)
101 PRK00409 recombination and DNA 54.7 3.5E+02 0.0075 36.9 17.7 12 173-184 350-361 (782)
102 PF02029 Caldesmon: Caldesmon; 54.1 54 0.0012 41.8 9.5 9 82-90 12-20 (492)
103 PLN03086 PRLI-interacting fact 52.7 78 0.0017 41.0 10.7 10 1331-1340 529-538 (567)
104 PRK12705 hypothetical protein; 52.5 6.4E+02 0.014 32.7 20.5 13 585-597 252-264 (508)
105 PF13913 zf-C2HC_2: zinc-finge 52.1 4.6 9.9E-05 30.5 -0.1 23 1314-1340 3-25 (25)
106 KOG0612 Rho-associated, coiled 51.8 9.2E+02 0.02 34.3 23.8 15 1145-1159 1124-1138(1317)
107 KOG0982 Centrosomal protein Nu 49.8 6.3E+02 0.014 31.8 19.0 45 547-591 440-492 (502)
108 KOG1830 Wiskott Aldrich syndro 48.7 6.5E+02 0.014 31.6 22.4 6 201-206 342-347 (518)
109 COG4942 Membrane-bound metallo 45.7 7.3E+02 0.016 31.4 18.6 9 554-562 308-316 (420)
110 TIGR01069 mutS2 MutS2 family p 45.3 5E+02 0.011 35.4 16.9 19 544-563 627-645 (771)
111 PF09726 Macoilin: Transmembra 44.0 9.7E+02 0.021 32.4 28.9 11 346-356 418-428 (697)
112 COG2995 PqiA Uncharacterized p 43.5 15 0.00031 45.0 2.2 45 1272-1323 200-245 (418)
113 KOG1363 Predicted regulator of 43.3 88 0.0019 39.7 8.9 10 219-228 147-156 (460)
114 KOG2391 Vacuolar sorting prote 41.6 7.5E+02 0.016 30.3 16.1 7 200-206 86-92 (365)
115 KOG0681 Actin-related protein 40.0 2.9E+02 0.0063 35.6 12.4 22 194-215 105-128 (645)
116 KOG1830 Wiskott Aldrich syndro 39.0 9E+02 0.019 30.5 15.9 6 271-276 391-396 (518)
117 PRK13428 F0F1 ATP synthase sub 38.5 3.8E+02 0.0082 34.1 13.5 27 516-542 152-178 (445)
118 KOG0996 Structural maintenance 38.1 1.4E+03 0.03 32.5 19.0 17 696-712 652-668 (1293)
119 COG5242 TFB4 RNA polymerase II 38.0 15 0.00031 41.6 1.0 31 1294-1324 255-285 (296)
120 KOG0971 Microtubule-associated 37.4 1.3E+03 0.028 31.9 28.7 29 1161-1192 1007-1035(1243)
121 TIGR02098 MJ0042_CXXC MJ0042 f 37.3 10 0.00022 31.0 -0.3 25 1300-1324 3-36 (38)
122 KOG3119 Basic region leucine z 37.2 7.7E+02 0.017 29.2 18.5 13 179-191 18-30 (269)
123 PHA03247 large tegument protei 36.1 1.6E+03 0.034 35.0 19.5 8 654-661 3100-3107(3151)
124 PF06637 PV-1: PV-1 protein (P 36.0 8.7E+02 0.019 30.2 14.9 13 61-73 80-92 (442)
125 KOG4246 Predicted DNA-binding 35.0 1.1E+02 0.0023 40.7 7.9 12 588-599 488-499 (1194)
126 PRK15103 paraquat-inducible me 34.7 28 0.00061 43.5 2.9 29 1295-1323 217-245 (419)
127 KOG2357 Uncharacterized conser 33.4 1.4E+02 0.0029 37.2 8.0 15 74-88 133-147 (440)
128 KOG3859 Septins (P-loop GTPase 32.1 6.4E+02 0.014 30.3 12.7 6 201-206 104-109 (406)
129 KOG1996 mRNA splicing factor [ 30.9 1.3E+02 0.0028 35.7 7.0 22 950-971 339-360 (378)
130 KOG2253 U1 snRNP complex, subu 30.8 1.3E+03 0.028 30.7 16.2 29 152-180 37-65 (668)
131 PF03154 Atrophin-1: Atrophin- 30.7 1.7E+03 0.036 31.1 19.9 8 649-656 762-769 (982)
132 PF05071 NDUFA12: NADH ubiquin 30.6 36 0.00078 34.5 2.4 30 1118-1151 2-31 (105)
133 KOG0307 Vesicle coat complex C 29.7 1.8E+03 0.039 31.2 21.1 9 75-83 699-707 (1049)
134 KOG2253 U1 snRNP complex, subu 29.2 1.1E+03 0.023 31.4 15.1 7 241-247 126-132 (668)
135 PF12128 DUF3584: Protein of u 28.9 2E+03 0.043 31.4 22.0 157 345-501 383-541 (1201)
136 PF09731 Mitofilin: Mitochondr 28.9 1.4E+03 0.031 29.8 21.7 20 48-68 33-52 (582)
137 PF13719 zinc_ribbon_5: zinc-r 28.9 19 0.00041 29.7 0.0 24 1300-1323 3-35 (37)
138 KOG0112 Large RNA-binding prot 26.6 4.3E+02 0.0093 36.0 11.3 37 160-196 493-529 (975)
139 PF12172 DUF35_N: Rubredoxin-l 26.0 22 0.00047 29.1 -0.1 25 1296-1320 8-32 (37)
140 KOG4722 Zn-finger protein [Gen 25.7 1.3E+03 0.027 29.0 14.0 126 368-493 346-471 (672)
141 KOG3161 Predicted E3 ubiquitin 25.6 7.2E+02 0.016 32.8 12.5 17 264-280 564-580 (861)
142 PF09731 Mitofilin: Mitochondr 24.7 1.7E+03 0.036 29.1 22.2 11 725-735 539-549 (582)
143 KOG0577 Serine/threonine prote 24.1 1.8E+03 0.04 29.4 21.6 7 570-576 671-677 (948)
144 KOG0391 SNF2 family DNA-depend 24.0 1.5E+03 0.033 32.5 15.4 21 71-91 1706-1726(1958)
145 PF12072 DUF3552: Domain of un 23.9 1.1E+03 0.023 26.7 19.0 122 370-491 22-144 (201)
146 TIGR00155 pqiA_fam integral me 23.7 56 0.0012 40.8 2.8 27 1297-1323 213-240 (403)
147 KOG4849 mRNA cleavage factor I 23.2 1.4E+02 0.003 36.1 5.6 10 104-113 227-236 (498)
148 PF09862 DUF2089: Protein of u 22.4 24 0.00053 36.3 -0.5 28 1302-1329 1-29 (113)
149 KOG1265 Phospholipase C [Lipid 22.2 2.2E+03 0.048 29.8 20.0 173 307-482 1004-1183(1189)
150 COG3909 Cytochrome c556 [Energ 21.7 19 0.0004 38.0 -1.5 11 1262-1272 91-101 (147)
151 KOG0980 Actin-binding protein 20.5 2.4E+03 0.052 29.4 26.0 18 275-292 267-284 (980)
No 1
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.2e-34 Score=351.77 Aligned_cols=271 Identities=14% Similarity=0.067 Sum_probs=204.1
Q ss_pred hhhccccCCcccCCCceeeeccCCCCCCCCCCeeEEecCCC--cEEEEcCHHHHHHHHHhcccCCcchHHHHHHHHHHHH
Q 000448 1113 YVYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHDG--TWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIET 1190 (1497)
Q Consensus 1113 ~v~R~~pLG~DR~~nRYW~f~~s~s~~d~g~~ri~VE~~~g--~W~~y~t~e~ld~Ll~~L~~rG~RE~~L~~~L~~~~~ 1190 (1497)
..+|+.|||.||+++.||+. .+||+||+.|+ .| ||+|.-+|-.||.+||.--+ |..|...|....+
T Consensus 408 ~~iR~~~iG~dr~gr~ywfi----------~rrl~Ie~~det~l~-yysT~pqly~ll~cLd~~~~-e~~L~d~i~~~~e 475 (1414)
T KOG1473|consen 408 DSIRHTPIGRDRYGRKYWFI----------SRRLRIEGMDETLLW-YYSTCPQLYHLLRCLDRTYV-EMYLCDGIWERRE 475 (1414)
T ss_pred cceeccCCCcCccccchhce----------eeeeEEecCCCcEEE-EecCcHHHHHHHHHhchHHH-HHhhccchhhhHH
Confidence 34699999999999999998 78999999999 77 99999999999999996666 8899988888555
Q ss_pred HHHHHHHHhhcCccccccccc---------cccccccc--------ccCCCCCCCCCCCCCCcccCCCCcccC--ccchh
Q 000448 1191 SFKDKVRRNLQGIDTVGQSWT---------AIKNEAAE--------MDVDPDFASSDSPSSTVCGLNSDTLET--SSSFR 1251 (1497)
Q Consensus 1191 ~i~~~m~~r~~~~~~~~~~~~---------~~~~~~~~--------~~~~~~~~~~~~p~s~~~~~~~~~~~~--~~~~~ 1251 (1497)
.+.++|..|...+++.. +.+..... .++...-+.+ +-+.+..+. +...+ |.+..
T Consensus 476 ----e~~rqM~lT~~ltne~R~~~~f~~~~h~r~~l~~~c~~~lv~~iq~~~da~l--~e~~l~~i~-k~v~~~~S~s~~ 548 (1414)
T KOG1473|consen 476 ----EIIRQMGLTEELTNELRGAVDFGEDPHGRLFLGRDCAVLLVLCIQVVEDAIL--KEENLGDID-KVVLVLISASAH 548 (1414)
T ss_pred ----HHHHhccchhhhhhhhhcccccccCCCcceeeecchhhHHhhhhhhhhhhhh--hHhhhcchH-hhhhhhhhcccc
Confidence 55567777777777666 11111111 0000000000 000011111 01111 11111
Q ss_pred hhcccchHHHHHHHHhhhhHHHHHHhhhccccchhhhccccchhccccccccccccccCccCCCCCcccccccCCCCCcc
Q 000448 1252 IELGRNEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSK 1331 (1497)
Q Consensus 1252 ie~g~~~~e~~~~~~r~~~f~~w~w~~~~~~~~~~a~k~g~k~~~~~l~~c~~c~~~y~~~e~hc~~cH~tf~~~d~~~~ 1331 (1497)
-| .-.|...+.++|++.. --+..+.+. .+|.++++.| .+.+++.......+.+..++.-| +.++
T Consensus 549 ~e---E~~e~ck~is~~~d~p--~~n~~~~~e--~~~dqtf~~y--~ys~n~vse~~~~d~e~~dkk~~-------~~tk 612 (1414)
T KOG1473|consen 549 QE---EYVEICKAISQYWDLP--EGNLWRLRE--EGNDQTFMKY--YYSGNEVSEIFLTDSENADKKSH-------MQTK 612 (1414)
T ss_pred hH---HHHHHHHHHhhccccc--ccchhhhhh--cccccchhhh--cccCCchhhccCCchhhhccccc-------ccce
Confidence 11 2345578888998887 555555656 7889999998 88999999999999999999999 7899
Q ss_pred cchhhHHhhhhhccCCcccc--ccCCcchHHHHHHHhHHHHHHhcCChhhhhhhhhhhhhHHHHHhhcccCCHHHHHHHH
Q 000448 1332 FSEHSIQCEEKTKLGLRDIH--VSDSSLPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLL 1409 (1497)
Q Consensus 1332 ~s~h~~~c~~k~~~~~~~~~--~~~~~~~~~~~~Lk~~l~~iE~~~p~~al~~~w~~~~rk~W~~~l~~~ss~~el~q~l 1409 (1497)
|++|++ +|..|.+ +++++-.....++...|...++.+|.+.++..|-.. -|.|...|..|-++.+|.-+|
T Consensus 613 f~l~~n-------sd~~~~g~~~t~gt~~~~~~~~~~t~~~~lSniP~s~~n~~w~~~-tkg~~lavs~A~~~~el~s~t 684 (1414)
T KOG1473|consen 613 FALITN-------SDGVTAGNVTTYGTGSQHKKLIARTLQQGLSNIPISYNNRKWPVY-TKGFELAVSAAADLAELSSET 684 (1414)
T ss_pred eccccc-------ccceeccccccccchhhcchHHHhhhhhhhccCchHhhhccchhh-ccchhhhhhccchHHHHHHhh
Confidence 999988 8888866 888888999999999999999999999999999887 999999999999999999999
Q ss_pred HHHHhhhhhhhcccccc
Q 000448 1410 TILESGIKRSYLSSNFE 1426 (1497)
Q Consensus 1410 ~~le~~ik~~~l~~~~~ 1426 (1497)
..+.-+++-.-..+.|+
T Consensus 685 ~~~d~s~~~~~~~~~ss 701 (1414)
T KOG1473|consen 685 LEPDLSKRSNAFKAASS 701 (1414)
T ss_pred cccchhhhhhhhccchh
Confidence 99999988877777665
No 2
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.61 E-value=2.2e-15 Score=162.61 Aligned_cols=82 Identities=27% Similarity=0.484 Sum_probs=73.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccCCCcc
Q 000448 18 VNNNNNNHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKK 97 (1497)
Q Consensus 18 ~~~~~~~~s~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~~~~~ 97 (1497)
.+......+++++|.|++||.|+..||..|.+.|++++|+...+|.+||..||||.+||+|||||||.|.||..+.+...
T Consensus 108 ~E~~e~~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~~ 187 (245)
T KOG0850|consen 108 PEPSERRPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSGP 187 (245)
T ss_pred cCcceeccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCCc
Confidence 34556667788899999999999999999999999999999999999999999999999999999999999988855543
Q ss_pred cc
Q 000448 98 MR 99 (1497)
Q Consensus 98 ~~ 99 (1497)
..
T Consensus 188 ~e 189 (245)
T KOG0850|consen 188 VE 189 (245)
T ss_pred cc
Confidence 33
No 3
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.59 E-value=3e-15 Score=159.07 Aligned_cols=64 Identities=30% Similarity=0.460 Sum_probs=60.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhccc
Q 000448 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1497)
Q Consensus 29 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~ 92 (1497)
+.++||.||+|+..|+..||..|...+|++..+|.-||.+|.||++||+|||||||.||||+-.
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~a 164 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYA 164 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHh
Confidence 3488999999999999999999999999999999999999999999999999999999999653
No 4
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.52 E-value=4.1e-15 Score=141.70 Aligned_cols=65 Identities=32% Similarity=0.553 Sum_probs=61.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccC
Q 000448 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1497)
Q Consensus 29 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~ 93 (1497)
.++.||-||.||+.||..||+.|..++||++..|++||.++.||+.+|||||||||+|.||+.+.
T Consensus 14 krKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~ 78 (125)
T KOG0484|consen 14 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERA 78 (125)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 35778889999999999999999999999999999999999999999999999999999997643
No 5
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.51 E-value=3e-14 Score=165.42 Aligned_cols=65 Identities=34% Similarity=0.533 Sum_probs=61.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccCC
Q 000448 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1497)
Q Consensus 30 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~~ 94 (1497)
+|+|+.||.||..||..||+.|++..|++..+|.+||..||||..||++||||||+||||....+
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~g 234 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAEG 234 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHhh
Confidence 78888999999999999999999999999999999999999999999999999999999976553
No 6
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.48 E-value=6.1e-14 Score=160.15 Aligned_cols=65 Identities=26% Similarity=0.537 Sum_probs=60.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccC
Q 000448 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1497)
Q Consensus 29 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~ 93 (1497)
-.++||+|..||..|+.+||+.|.+++|++.++|++||..|+||++||||||||||.|+||+.+.
T Consensus 150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~d 214 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKD 214 (307)
T ss_pred cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhh
Confidence 45788889999999999999999999999999999999999999999999999999999996544
No 7
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.47 E-value=3.5e-14 Score=162.23 Aligned_cols=70 Identities=36% Similarity=0.606 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccCCCc
Q 000448 27 NEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPK 96 (1497)
Q Consensus 27 ~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~~~~ 96 (1497)
..+++.||.||.||..||.+||+.|+.|+|++...|.+||..|.|+++||+|||||||+||||..+....
T Consensus 154 ~~~~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~~ 223 (261)
T KOG0489|consen 154 ETGGKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKSS 223 (261)
T ss_pred cccCCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccc
Confidence 3445789999999999999999999999999999999999999999999999999999999997665444
No 8
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=99.41 E-value=1.9e-13 Score=122.81 Aligned_cols=60 Identities=57% Similarity=0.920 Sum_probs=55.9
Q ss_pred hhhhhhhhhHHHHhHhhhhcccccCCCHHHHHHHHhccCch-HHHHHHHHHHHHHhcCccc
Q 000448 541 EENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESR-LLGEIHLALLKSIIKDIED 600 (1497)
Q Consensus 541 ~e~v~dlL~Vw~FL~~F~~~L~L~pFTlddf~~AL~~~~s~-LL~Eih~aLLk~i~~d~ed 600 (1497)
++.|+++||||+||++|+++|+|+|||||||++||.++++. +|.|||++||++|+++.+|
T Consensus 1 ~~~~~~~L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~~~ll~ei~~~LL~~l~~~~~d 61 (61)
T PF02791_consen 1 GEAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDPSGLLAEIHCALLKALLADEED 61 (61)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCcchhHHHHHHHHHHHHHhccCC
Confidence 36799999999999999999999999999999999987664 9999999999999999774
No 9
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.37 E-value=2.5e-13 Score=144.03 Aligned_cols=67 Identities=33% Similarity=0.502 Sum_probs=61.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccCCCc
Q 000448 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPK 96 (1497)
Q Consensus 30 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~~~~ 96 (1497)
+..|++||.||.+||..||+.|...+|+++.+|.+++..|.||++||+|||||||+|.||.+.....
T Consensus 142 k~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~E 208 (246)
T KOG0492|consen 142 KPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAELE 208 (246)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999999999999999999999999997765433
No 10
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.36 E-value=5e-13 Score=152.88 Aligned_cols=64 Identities=38% Similarity=0.611 Sum_probs=61.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhccc
Q 000448 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1497)
Q Consensus 29 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~ 92 (1497)
.++.||||..+|..|+.+||+.|..|.|.+...|.+|++.|+||++||+|||||||+|.||..+
T Consensus 232 ~~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~r 295 (308)
T KOG0487|consen 232 ARRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNR 295 (308)
T ss_pred ccccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhh
Confidence 3678999999999999999999999999999999999999999999999999999999999764
No 11
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.36 E-value=3.4e-13 Score=140.86 Aligned_cols=63 Identities=35% Similarity=0.564 Sum_probs=60.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccC
Q 000448 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1497)
Q Consensus 31 k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~ 93 (1497)
+.||.||.||..||..||..|+.|+|....+|++||..|+|++.||+|||||||.|.||.+..
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e 163 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQE 163 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHH
Confidence 778999999999999999999999999999999999999999999999999999999996544
No 12
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.33 E-value=1.9e-12 Score=139.80 Aligned_cols=67 Identities=33% Similarity=0.535 Sum_probs=62.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccCC
Q 000448 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1497)
Q Consensus 28 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~~ 94 (1497)
..++.||.||+||..|+.+||..|.+++||+...|++||.+|+|.+.+|||||.|||+|+|+++...
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 3458899999999999999999999999999999999999999999999999999999999977653
No 13
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=99.31 E-value=1.8e-12 Score=117.22 Aligned_cols=58 Identities=45% Similarity=0.844 Sum_probs=54.7
Q ss_pred hhhhhhhhHHHHhHhhhhcccccCCC--HHHHHHHHhccCch-HHHHHHHHHHHHHhcCcc
Q 000448 542 ENVGNLLMVWRFFITFADVLGLWPFT--LDEFVQAFHDHESR-LLGEIHLALLKSIIKDIE 599 (1497)
Q Consensus 542 e~v~dlL~Vw~FL~~F~~~L~L~pFT--lddf~~AL~~~~s~-LL~Eih~aLLk~i~~d~e 599 (1497)
+.++++||||+||++|+++|+|+||+ ||||++||.+.++. +|.+||++||++|+++++
T Consensus 2 ~~~~d~l~V~eFl~~F~~~L~L~~f~~~l~~f~~Al~~~~~~~ll~ei~~~LL~~i~~d~~ 62 (63)
T smart00571 2 EAFGDLLMVYEFLRSFGKVLGLSPFRATLEDFIAALKCRDQNGLLTEVHVVLLRAILKDEG 62 (63)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHhcCCcchHHHHHHHHHHHHHHhCCC
Confidence 67999999999999999999999999 99999999987775 999999999999999865
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.30 E-value=9.3e-13 Score=144.31 Aligned_cols=67 Identities=31% Similarity=0.551 Sum_probs=60.6
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccCC
Q 000448 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1497)
Q Consensus 28 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~~ 94 (1497)
+.+.+-+-|.++|..|.-+||+.|+.++|.++..+.+||..|||++|||+|||||||+|+||..+..
T Consensus 195 KtRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 195 KTRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred eeecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 3344556699999999999999999999999999999999999999999999999999999976654
No 15
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.29 E-value=1.6e-12 Score=141.43 Aligned_cols=61 Identities=36% Similarity=0.616 Sum_probs=56.8
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccC
Q 000448 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1497)
Q Consensus 33 rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~ 93 (1497)
|+-||.||..|+..||+.|...+||+...|+-||.++.|.+.+|||||||||+||||..+.
T Consensus 142 Rh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 142 RHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred ccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhh
Confidence 3349999999999999999999999999999999999999999999999999999996543
No 16
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.28 E-value=3.3e-12 Score=141.56 Aligned_cols=62 Identities=35% Similarity=0.597 Sum_probs=59.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcc
Q 000448 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1497)
Q Consensus 30 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~ 91 (1497)
.+-||-||.||.+|+..||+.|-+..|-+.+.|.+||..|+|++..|+|||||||+|+||+.
T Consensus 179 dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQR 240 (408)
T KOG0844|consen 179 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 240 (408)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999953
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.26 E-value=3.1e-12 Score=112.85 Aligned_cols=57 Identities=46% Similarity=0.733 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhh
Q 000448 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1497)
Q Consensus 33 rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr 89 (1497)
|++|+.||..|+..|+..|..++||+..++..||..+||+..+|++||+|||+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 678999999999999999999999999999999999999999999999999999986
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=7.1e-10 Score=134.90 Aligned_cols=27 Identities=4% Similarity=-0.026 Sum_probs=13.1
Q ss_pred hhHHHHhHhhhhcccccCCCHHHHHHHHhc
Q 000448 548 LMVWRFFITFADVLGLWPFTLDEFVQAFHD 577 (1497)
Q Consensus 548 L~Vw~FL~~F~~~L~L~pFTlddf~~AL~~ 577 (1497)
-.+.+-++.|++. .-.+.+.|.+-|..
T Consensus 471 kt~ie~~~~q~e~---~isei~qlqarikE 497 (1118)
T KOG1029|consen 471 KTEIEEVTKQREL---MISEIDQLQARIKE 497 (1118)
T ss_pred HHHHHHhhhHHHH---HHHHHHHHHHHHHH
Confidence 3445555555543 22345555555543
No 19
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.17 E-value=3.7e-11 Score=139.78 Aligned_cols=62 Identities=26% Similarity=0.476 Sum_probs=59.5
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhccc
Q 000448 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1497)
Q Consensus 31 k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~ 92 (1497)
++||+||+|+......||++|.+|+.|+..++..||.+|+|...+|+|||||||+|.||...
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999433
No 20
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.15 E-value=9.4e-11 Score=129.46 Aligned_cols=68 Identities=37% Similarity=0.567 Sum_probs=63.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccCCCccc
Q 000448 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKKM 98 (1497)
Q Consensus 31 k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~~~~~~ 98 (1497)
..||+||.+|..||+.|..+|+..+.|....|++|+..+||..++|||||||||+|.||.++...++.
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~R 233 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTR 233 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhH
Confidence 46899999999999999999999999999999999999999999999999999999999888766643
No 21
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.13 E-value=5.7e-11 Score=105.19 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=51.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHhCCCcccccccccchh
Q 000448 32 GKPKRQMKTPFQLETLEKAYASETY----PSESTRAELSEKLGLSDRQLQMWFCHRR 84 (1497)
Q Consensus 32 ~rr~Rt~ft~~Ql~~Le~~F~~~~y----Ps~~~R~eLA~~LgLte~qVqvWFQNRR 84 (1497)
+||.||.||..|+..|+..|..++| |+...|.+||..+||++++|+|||||.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4889999999999999999999999 9999999999999999999999999965
No 22
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.12 E-value=2e-11 Score=125.74 Aligned_cols=65 Identities=35% Similarity=0.581 Sum_probs=60.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccCCC
Q 000448 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPP 95 (1497)
Q Consensus 31 k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~~~ 95 (1497)
++++.||+|+..|+..|++.|+..+|++..+|.+||..|+|+++||+.||||||+|.||..+...
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 45677999999999999999999999999999999999999999999999999999999765433
No 23
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.09 E-value=4.6e-11 Score=130.36 Aligned_cols=58 Identities=36% Similarity=0.607 Sum_probs=56.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhh
Q 000448 32 GKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1497)
Q Consensus 32 ~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr 89 (1497)
-||+||.||.+||..|...|+.|+|++...|++||..|||.+.||+|||||+|+|-||
T Consensus 246 eKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 246 EKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred hcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhh
Confidence 3678999999999999999999999999999999999999999999999999999999
No 24
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.05 E-value=1.4e-10 Score=101.75 Aligned_cols=56 Identities=52% Similarity=0.798 Sum_probs=52.9
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhh
Q 000448 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDK 88 (1497)
Q Consensus 33 rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~K 88 (1497)
++.|+.|+..|+.+|+..|..++||+..++..||..+||+..+|++||+|||.+.+
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 46788899999999999999999999999999999999999999999999998864
No 25
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.04 E-value=1.9e-09 Score=144.83 Aligned_cols=57 Identities=21% Similarity=0.133 Sum_probs=47.0
Q ss_pred chhhhhccccccccCCHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 000448 934 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWA 990 (1497)
Q Consensus 934 e~~l~~L~~~eY~~LsveeKl~aL~aLc~l~l~t~sIR~~LEerlE~~~~lkkq~~e 990 (1497)
+...+.|.+..|.+|...+++.+|..||+.++++..++++|+.+.+....|+++..+
T Consensus 651 ~~~~~kl~~~~v~dl~~~~~~~il~~~~~~l~~~~e~~d~i~~~~~~~~eLk~~~~~ 707 (1404)
T KOG1245|consen 651 EELMEKLHTLLVFDLRAEEKDKILRQLCQRLLMLGEVVDHIEDRQQLTRELKQEITE 707 (1404)
T ss_pred hhhhhhHHHHHHHhhhhhhhhhHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhhhh
Confidence 347889999999999999999999999999999999999999955444444444333
No 26
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.02 E-value=2.3e-10 Score=101.03 Aligned_cols=57 Identities=47% Similarity=0.803 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhh
Q 000448 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1497)
Q Consensus 33 rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr 89 (1497)
++.|+.|+..|+.+|+..|..++||+..++..||..+||+..+|++||+|||.+.++
T Consensus 1 ~~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999999999999999999999999999887
No 27
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.01 E-value=1.6e-10 Score=129.87 Aligned_cols=64 Identities=31% Similarity=0.532 Sum_probs=60.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccC
Q 000448 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1497)
Q Consensus 30 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~ 93 (1497)
+|+||-||.||.+||..||..|++|.||+...|++||.-++||+.+|+|||.|||+||||..+.
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN 173 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERN 173 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhh
Confidence 4788899999999999999999999999999999999999999999999999999999996654
No 28
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=99.01 E-value=2.4e-10 Score=92.50 Aligned_cols=37 Identities=46% Similarity=0.744 Sum_probs=32.2
Q ss_pred ccccCCcccCCCceeeeccCCCCCCCCCCeeEEecCC
Q 000448 1116 RSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHD 1152 (1497)
Q Consensus 1116 R~~pLG~DR~~nRYW~f~~s~s~~d~g~~ri~VE~~~ 1152 (1497)
|++|||+||++||||||..+...+...+++||||..+
T Consensus 1 R~~pLG~DR~~NrYwwf~~s~~~~~~~~~~~~v~~~~ 37 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWFSSSSSNSQYYNGGRFVEQGP 37 (38)
T ss_pred CcccccccCCCceEEEEecccccCCCCCceEEEEeCC
Confidence 7899999999999999977666667779999999765
No 29
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.00 E-value=3.6e-10 Score=119.43 Aligned_cols=64 Identities=36% Similarity=0.582 Sum_probs=60.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccC
Q 000448 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1497)
Q Consensus 30 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~ 93 (1497)
...+++|++.|..|+.+|++.|..|+||+...|..|+..+||+++-|||||||||++.|+....
T Consensus 49 ~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~ 112 (156)
T COG5576 49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSG 112 (156)
T ss_pred CcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhccc
Confidence 4678889999999999999999999999999999999999999999999999999999986544
No 30
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=98.92 E-value=5.6e-10 Score=121.74 Aligned_cols=61 Identities=34% Similarity=0.555 Sum_probs=56.5
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcc
Q 000448 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1497)
Q Consensus 31 k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~ 91 (1497)
....++.+||..|+..||..|+.+.|+.+..+..||..|||.++||.||||||||+||.++
T Consensus 49 ~~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kq 109 (198)
T KOG0483|consen 49 KGKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQ 109 (198)
T ss_pred ccccccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchh
Confidence 3455666899999999999999999999999999999999999999999999999999865
No 31
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=98.90 E-value=4.8e-10 Score=119.88 Aligned_cols=65 Identities=29% Similarity=0.499 Sum_probs=60.6
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhccc
Q 000448 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1497)
Q Consensus 28 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~ 92 (1497)
..++++..|.+|+..|+..|+..|.+.+|+-..+|.+||..+||++.||+|||||||.||||+..
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 34577888999999999999999999999999999999999999999999999999999999654
No 32
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=98.80 E-value=3.5e-09 Score=88.71 Aligned_cols=35 Identities=43% Similarity=0.694 Sum_probs=34.2
Q ss_pred EEEEcCHHHHHHHHHhc-ccCCcchHHHHHHHHHHH
Q 000448 1155 WRLIDTVEAFDALLSSL-DARGTRESHLRIMLQKIE 1189 (1497)
Q Consensus 1155 W~~y~t~e~ld~Ll~~L-~~rG~RE~~L~~~L~~~~ 1189 (1497)
|+||+++++||+|+.|| ||||+||++|++.|.+.+
T Consensus 1 W~~~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~ 36 (46)
T PF15614_consen 1 WGYYDDPEELDELLKALENPRGKRESKLKKELDKHR 36 (46)
T ss_pred CccccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999977
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.69 E-value=2.3e-08 Score=112.17 Aligned_cols=64 Identities=31% Similarity=0.386 Sum_probs=60.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhccc
Q 000448 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1497)
Q Consensus 29 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~ 92 (1497)
..++|+.|+.|+..|+.+|++.|..++||+...|+.||..+++++..|+|||||||+||++...
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4478899999999999999999999999999999999999999999999999999999999654
No 34
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.58 E-value=1.5e-07 Score=112.25 Aligned_cols=67 Identities=30% Similarity=0.578 Sum_probs=61.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccCCC
Q 000448 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPP 95 (1497)
Q Consensus 29 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~~~ 95 (1497)
.++.+|.||+|+..|+..|+..|+.++||++..|++||..+++++..|+|||+|||++++|......
T Consensus 173 ~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~~~s 239 (354)
T KOG0849|consen 173 QRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHRDCS 239 (354)
T ss_pred cccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcccccc
Confidence 3567778999999999999999999999999999999999999999999999999999999764433
No 35
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.6e-05 Score=95.23 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=8.5
Q ss_pred CCCccCCCCCCCCCC
Q 000448 293 KPAHIFSSPNGGEDS 307 (1497)
Q Consensus 293 ~p~~~~p~p~~~~~~ 307 (1497)
.|+.++|+.++...+
T Consensus 271 lP~E~Vpp~~r~~rs 285 (1118)
T KOG1029|consen 271 LPPELVPPSFRSSRS 285 (1118)
T ss_pred CChhhcCcccccccC
Confidence 345677766665444
No 36
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=98.41 E-value=2.5e-07 Score=80.00 Aligned_cols=48 Identities=33% Similarity=0.414 Sum_probs=41.0
Q ss_pred chhhhhccccccccCCHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 000448 934 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAA 981 (1497)
Q Consensus 934 e~~l~~L~~~eY~~LsveeKl~aL~aLc~l~l~t~sIR~~LEerlE~~ 981 (1497)
+.|+..|.+++|++|++++|+.||++||+.++++.+||++|+++.|++
T Consensus 3 ~~~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e~~ 50 (50)
T PF15612_consen 3 PGLAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREEEQ 50 (50)
T ss_dssp GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT--
T ss_pred hhhhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhccC
Confidence 458899999999999999999999999999999999999999998764
No 37
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.40 E-value=9.3e-08 Score=106.30 Aligned_cols=63 Identities=32% Similarity=0.537 Sum_probs=59.4
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhc
Q 000448 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKE 90 (1497)
Q Consensus 28 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~ 90 (1497)
.++.+||+||.+....-..||.+|..++.|+.+...-+|.+|.|...+|+|||||.|+|.||.
T Consensus 305 ~~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm 367 (385)
T KOG1168|consen 305 PGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 367 (385)
T ss_pred CccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHh
Confidence 345689999999999999999999999999999999999999999999999999999999994
No 38
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.27 E-value=1.8e-06 Score=96.33 Aligned_cols=50 Identities=32% Similarity=0.535 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhh
Q 000448 40 TPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1497)
Q Consensus 40 t~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr 89 (1497)
...-...|...|..|+||+..++.+||+.+||+..||-+||.|||+++|-
T Consensus 184 KekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 184 KEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 33446799999999999999999999999999999999999999999994
No 39
>PTZ00121 MAEBL; Provisional
Probab=98.22 E-value=6.2e-05 Score=98.03 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=8.0
Q ss_pred hHHhhhhhccCCcc
Q 000448 1336 SIQCEEKTKLGLRD 1349 (1497)
Q Consensus 1336 ~~~c~~k~~~~~~~ 1349 (1497)
--.|..+.-.||.+
T Consensus 1993 YynCmk~EF~dp~Y 2006 (2084)
T PTZ00121 1993 YYDCMKEEFADKDY 2006 (2084)
T ss_pred HHhhHHhhccCcch
Confidence 34566666556655
No 40
>PTZ00121 MAEBL; Provisional
Probab=98.17 E-value=0.0001 Score=96.06 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=10.8
Q ss_pred ccchhhHHhhhhhc
Q 000448 1331 KFSEHSIQCEEKTK 1344 (1497)
Q Consensus 1331 ~~s~h~~~c~~k~~ 1344 (1497)
-|..+.-.|=.|.+
T Consensus 2000 EF~dp~Y~CF~K~~ 2013 (2084)
T PTZ00121 2000 EFADKDYKCFKKKE 2013 (2084)
T ss_pred hccCcchhhhcccC
Confidence 57778888888775
No 41
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=98.15 E-value=4.1e-06 Score=92.54 Aligned_cols=60 Identities=28% Similarity=0.507 Sum_probs=55.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcc
Q 000448 32 GKPKRQMKTPFQLETLEKAYA---SETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1497)
Q Consensus 32 ~rr~Rt~ft~~Ql~~Le~~F~---~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~ 91 (1497)
.+|+|..|+..-.++|..+|. .|||||...+++||.++|++..||..||.|.|-+.+|..
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 467888999999999999995 589999999999999999999999999999999999854
No 42
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.07 E-value=0.00013 Score=96.69 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=4.2
Q ss_pred HHHHHhhCC
Q 000448 173 ACVEAQLGE 181 (1497)
Q Consensus 173 a~v~~~lg~ 181 (1497)
..++-..|.
T Consensus 232 ILYELLTGk 240 (1021)
T PTZ00266 232 IIYELCSGK 240 (1021)
T ss_pred HHHHHHHCC
Confidence 334555554
No 43
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.72 E-value=0.0013 Score=81.25 Aligned_cols=21 Identities=19% Similarity=0.087 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCCccccccccc
Q 000448 61 TRAELSEKLGLSDRQLQMWFC 81 (1497)
Q Consensus 61 ~R~eLA~~LgLte~qVqvWFQ 81 (1497)
..+-+...+|+...+.-+-|-
T Consensus 39 ~~e~~t~~~N~~~d~~~~d~~ 59 (811)
T KOG4364|consen 39 EKESQTSSLNLEMDGLFDDFR 59 (811)
T ss_pred ccccchhhhhcccchhHHHHH
Confidence 344456667777777777763
No 44
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=97.71 E-value=1.7e-05 Score=73.79 Aligned_cols=68 Identities=37% Similarity=0.517 Sum_probs=55.9
Q ss_pred cchhhhHHHhhhhccCCCCchhHHhHHHHhhccccCCCCCCcchhhhhhhccccc----hhhccCCCcccccCC
Q 000448 723 GTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTK----LFERIAPSTYCVRPA 792 (1497)
Q Consensus 723 gt~k~~~f~vls~~g~~gl~v~e~a~~iqk~gl~d~~ts~~~e~~i~~~ls~d~~----lfer~apsty~~r~~ 792 (1497)
+|.+-||++||...| ..|+..|+.+.|+..|+-+.. ++||++.|++.|.+|++ .|-++.+++|+||.+
T Consensus 1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~~~~~~-~k~p~~~i~a~ly~~~~~~d~~F~~vg~~~~~L~~w 72 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERGLYKKS-GKTPEATIAAQLYTDIKNEDSRFVKVGPGRWGLRSW 72 (72)
T ss_dssp S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHHTS----GGGGGHHHH-HHHHHHH-T-SS-EESSSSEEE-GGG
T ss_pred CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCCCcc-cCCHHHHHHHHHHHHcccCCCCEEEeCCCcEEeeeC
Confidence 488899999999999 999999999999999998877 89999999999999998 999999999999853
No 45
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.60 E-value=0.0046 Score=76.62 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000448 419 RSLREQKREMERREKFLQK 437 (1497)
Q Consensus 419 r~~re~~rEeEr~eke~ek 437 (1497)
++++++++|++...+.+++
T Consensus 314 keEKrrKdE~Ek~kKqeek 332 (811)
T KOG4364|consen 314 KEEKRRKDEQEKLKKQEEK 332 (811)
T ss_pred HHHHhhhhHHHHHHHHHHH
Confidence 3333333444444433333
No 46
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.27 E-value=9e-05 Score=61.47 Aligned_cols=34 Identities=35% Similarity=0.756 Sum_probs=29.0
Q ss_pred hcCCCCHHHHHHHHHHhCCCcccccccccchhhh
Q 000448 53 SETYPSESTRAELSEKLGLSDRQLQMWFCHRRLK 86 (1497)
Q Consensus 53 ~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK 86 (1497)
.+|||+..++..||..+||+..||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 5799999999999999999999999999998864
No 47
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.16 E-value=0.00037 Score=85.18 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=54.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhh
Q 000448 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKD 87 (1497)
Q Consensus 30 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~ 87 (1497)
-+.||+|.+||..|...|..+|+.+++|+..+.+.|+.+|||....|.+||-|-|.+.
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 3678889999999999999999999999999999999999999999999999987764
No 48
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=97.05 E-value=0.099 Score=56.57 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=6.0
Q ss_pred CCCCCCCCCC
Q 000448 325 SHPIFGTEDP 334 (1497)
Q Consensus 325 ~~~~~~~~~p 334 (1497)
..|++|+.||
T Consensus 12 ~K~saGTtda 21 (171)
T PF05672_consen 12 GKPSAGTTDA 21 (171)
T ss_pred CCCCCCCCCH
Confidence 3456666666
No 49
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.99 E-value=0.066 Score=60.60 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000448 348 EQRMEKKRKCDEARIAREVEA 368 (1497)
Q Consensus 348 ~~k~e~~rk~eeer~~ke~e~ 368 (1497)
..+.+++++.+-++.+.+.++
T Consensus 276 akraeerrqieterlrqeeee 296 (445)
T KOG2891|consen 276 AKRAEERRQIETERLRQEEEE 296 (445)
T ss_pred HHHHHHHhhhhHHHHhhhHhh
Confidence 455666666666766665554
No 50
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=96.97 E-value=0.00057 Score=76.87 Aligned_cols=65 Identities=35% Similarity=0.571 Sum_probs=60.3
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhccc
Q 000448 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1497)
Q Consensus 28 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~ 92 (1497)
...+.++.|+.++..|+..+...|..++||+...+..|+..+|++...|++||||+|++.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 34578889999999999999999999999999999999999999999999999999999998433
No 51
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.88 E-value=0.053 Score=61.32 Aligned_cols=21 Identities=43% Similarity=0.901 Sum_probs=10.0
Q ss_pred HHHhhCCCCcc--CCCCcccccC
Q 000448 175 VEAQLGEPLRE--DGPILGMEFD 195 (1497)
Q Consensus 175 v~~~lg~~~~~--~gp~lg~efd 195 (1497)
|.-+.|.|||+ .|.+-|+.|.
T Consensus 191 vdipicdplr~~mn~kisgiq~~ 213 (445)
T KOG2891|consen 191 VDIPICDPLREEMNGKISGIQFH 213 (445)
T ss_pred cCCcccchhHHHhcCccccceee
Confidence 34455555544 3455554443
No 52
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.31 E-value=0.0044 Score=82.17 Aligned_cols=63 Identities=30% Similarity=0.547 Sum_probs=58.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcc
Q 000448 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1497)
Q Consensus 29 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~ 91 (1497)
+-.+|+.||.++..||.++...|....||...+.+-|...+++..+.|++||||-|+|.++..
T Consensus 900 ~~~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~ 962 (1406)
T KOG1146|consen 900 GMGRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAK 962 (1406)
T ss_pred hhhhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhh
Confidence 345778899999999999999999999999999999999999999999999999999999843
No 53
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.086 Score=66.90 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=5.1
Q ss_pred cccCCCCcCcc
Q 000448 866 LVSGKDNACND 876 (1497)
Q Consensus 866 ~~~~~~~~~~~ 876 (1497)
+++|...+||.
T Consensus 556 lRsrgsslC~~ 566 (1064)
T KOG1144|consen 556 LRSRGSSLCDL 566 (1064)
T ss_pred hhhccccccce
Confidence 44444444443
No 54
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.39 E-value=0.29 Score=61.97 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=14.7
Q ss_pred ccccCCCHHHHHHHHhc-cCchHHH
Q 000448 561 LGLWPFTLDEFVQAFHD-HESRLLG 584 (1497)
Q Consensus 561 L~L~pFTlddf~~AL~~-~~s~LL~ 584 (1497)
..|+...+.+|-.++.. -|-+||.
T Consensus 1065 YDl~~wkyaeLRDtINTS~DieLL~ 1089 (1259)
T KOG0163|consen 1065 YDLSKWKYAELRDTINTSCDIELLE 1089 (1259)
T ss_pred cccccccHHHHHHhhcccccHHHHH
Confidence 45566667777777773 3445553
No 55
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=95.39 E-value=0.57 Score=58.64 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=21.9
Q ss_pred CccchHHHHHHHHHHHhhCCCCccC--CC---C-cccccCCCCCCCCCCCC
Q 000448 162 SQQSIMELRAIACVEAQLGEPLRED--GP---I-LGMEFDSLPPDAFGAPI 206 (1497)
Q Consensus 162 p~~~~~e~~aia~v~~~lg~~~~~~--gp---~-lg~efdplpp~~F~~pi 206 (1497)
|+-.+.-...|.-+=.-||+.+.-+ |+ | +-+-+||--.+.|++-|
T Consensus 19 p~~~~~t~~~i~~iG~~la~~~~~~~~~~~~~y~ii~~vd~~~~~~~~ADi 69 (489)
T PF05262_consen 19 PHASIETAQQIRGIGSGLAEALKNGRAGSYGRYYIIHAVDPEEKKKLDADI 69 (489)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCCccCcEEEEEecCcccccCCCCcE
Confidence 4333444455666655555544321 22 2 22334555556777766
No 56
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=95.29 E-value=1.2 Score=48.50 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=10.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000448 342 TFNNDAEQRMEKKRKCDEARIAREVEA 368 (1497)
Q Consensus 342 ~~~~~e~~k~e~~rk~eeer~~ke~e~ 368 (1497)
+...++..++...++ ..++.++++++
T Consensus 18 TtdaEEAtkiLAEkR-RlAReQkErEE 43 (171)
T PF05672_consen 18 TTDAEEATKILAEKR-RLAREQKEREE 43 (171)
T ss_pred CCCHHHHHHHHHHHH-HHHHHHhhhHH
Confidence 333444444443322 23444444443
No 57
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.24 E-value=1 Score=57.32 Aligned_cols=7 Identities=57% Similarity=0.757 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 000448 652 IFRQLAL 658 (1497)
Q Consensus 652 iLRq~~l 658 (1497)
|-||+-+
T Consensus 1181 I~RQm~l 1187 (1259)
T KOG0163|consen 1181 IARQMEL 1187 (1259)
T ss_pred HHhhhee
Confidence 5555443
No 58
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=94.34 E-value=1.3 Score=55.51 Aligned_cols=6 Identities=17% Similarity=-0.003 Sum_probs=2.4
Q ss_pred HHHHHH
Q 000448 170 RAIACV 175 (1497)
Q Consensus 170 ~aia~v 175 (1497)
.+||.|
T Consensus 108 ~fit~Y 113 (489)
T PF05262_consen 108 TFITIY 113 (489)
T ss_pred HHHHHH
Confidence 344443
No 59
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.73 E-value=0.26 Score=62.81 Aligned_cols=9 Identities=44% Similarity=0.770 Sum_probs=6.0
Q ss_pred hccccchhh
Q 000448 631 YAWGFDIRN 639 (1497)
Q Consensus 631 ~~wg~~~~~ 639 (1497)
.++||+|+.
T Consensus 839 ~afgF~is~ 847 (1102)
T KOG1924|consen 839 QAFGFNISF 847 (1102)
T ss_pred hhhccchHH
Confidence 357777765
No 60
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.53 E-value=31 Score=44.52 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=9.7
Q ss_pred HHHHHHhhCCCCccCC
Q 000448 172 IACVEAQLGEPLREDG 187 (1497)
Q Consensus 172 ia~v~~~lg~~~~~~g 187 (1497)
..+|.+.+|.|-+.-.
T Consensus 623 A~~~~~~~~~~~QdaS 638 (1187)
T KOG0579|consen 623 AEAVNALFKKPSQDAS 638 (1187)
T ss_pred HHHHHHhhcCchhhhh
Confidence 3456777777755444
No 61
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=93.47 E-value=8.4 Score=50.35 Aligned_cols=11 Identities=45% Similarity=0.646 Sum_probs=7.5
Q ss_pred CcccccCCCCC
Q 000448 189 ILGMEFDSLPP 199 (1497)
Q Consensus 189 ~lg~efdplpp 199 (1497)
+|-++|+||--
T Consensus 395 iLEveF~PL~l 405 (988)
T KOG2072|consen 395 ILEVEFHPLKL 405 (988)
T ss_pred HHHhcCCHHHH
Confidence 46677877754
No 62
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=92.65 E-value=9.1 Score=45.06 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=6.0
Q ss_pred HHHHHHHHHhCC
Q 000448 651 EIFRQLALSAGF 662 (1497)
Q Consensus 651 EiLRq~~la~G~ 662 (1497)
+|-|.|+...-|
T Consensus 312 ~Iq~rfl~~~sf 323 (387)
T COG3064 312 AIQSRFLDADSF 323 (387)
T ss_pred HHHHHHhccccc
Confidence 445555555544
No 63
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=91.87 E-value=2 Score=53.57 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhCC
Q 000448 168 ELRAIACVEAQLGE 181 (1497)
Q Consensus 168 e~~aia~v~~~lg~ 181 (1497)
-.++|+.|+.-||+
T Consensus 29 l~a~~as~~~~l~~ 42 (591)
T KOG2412|consen 29 LVAEIASVEKKLNG 42 (591)
T ss_pred HHHHhhhhhhhhcc
Confidence 34568888777763
No 64
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=91.74 E-value=2.1 Score=53.33 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHhCC
Q 000448 648 TWHEIFRQLALSAGF 662 (1497)
Q Consensus 648 TwpEiLRq~~la~G~ 662 (1497)
|---||=.|+-++||
T Consensus 521 ~tatll~s~Lq~aG~ 535 (591)
T KOG2412|consen 521 TTATLLNSFLQTAGF 535 (591)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444444
No 65
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.34 E-value=3.2 Score=47.10 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=13.0
Q ss_pred HhHhhhhccccc-CCCHHHHHHHHhc
Q 000448 553 FFITFADVLGLW-PFTLDEFVQAFHD 577 (1497)
Q Consensus 553 FL~~F~~~L~L~-pFTlddf~~AL~~ 577 (1497)
||.-|-+.+.-. ...|+||..++.-
T Consensus 201 ll~eFv~YIk~nKvV~ledLas~f~L 226 (299)
T KOG3054|consen 201 LLSEFVEYIKKNKVVPLEDLASEFGL 226 (299)
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHhCc
Confidence 344444444333 3467777766664
No 66
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.13 E-value=0.63 Score=59.52 Aligned_cols=10 Identities=10% Similarity=-0.147 Sum_probs=4.3
Q ss_pred CCCCCCCcCC
Q 000448 150 MDDMPIVRRS 159 (1497)
Q Consensus 150 ~~~~~~~~~y 159 (1497)
||+||+++++
T Consensus 570 PPpPppppg~ 579 (1102)
T KOG1924|consen 570 PPPPPPPPGG 579 (1102)
T ss_pred CCccCCCCCC
Confidence 3344444444
No 67
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=90.84 E-value=21 Score=42.12 Aligned_cols=6 Identities=50% Similarity=0.429 Sum_probs=2.6
Q ss_pred HHHHHH
Q 000448 653 FRQLAL 658 (1497)
Q Consensus 653 LRq~~l 658 (1497)
|+|-.+
T Consensus 352 lCqAal 357 (387)
T COG3064 352 LCQAAL 357 (387)
T ss_pred HHHHHH
Confidence 444444
No 68
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=89.72 E-value=64 Score=40.39 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=14.6
Q ss_pred ccchhhhhhccCCCCHHHHHHHHHHHhCCCCcc
Q 000448 634 GFDIRNWQQLLNPLTWHEIFRQLALSAGFGPKL 666 (1497)
Q Consensus 634 g~~~~~w~~~Ld~lTwpEiLRq~~la~G~g~~~ 666 (1497)
||.++. .-.++|=+|.+|-.+ |.||..
T Consensus 625 ~cqfra---lyT~~~ETeei~kl~---gmgpk~ 651 (708)
T KOG3654|consen 625 GCQFRA---LYTYMPETEEIRKLT---GMGPKM 651 (708)
T ss_pred cceeec---ccccCccHHHHhhhh---ccCchh
Confidence 555543 345666666666543 555543
No 69
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=89.52 E-value=0.5 Score=59.98 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhhcccC
Q 000448 44 LETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1497)
Q Consensus 44 l~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr~~~~ 93 (1497)
+..|..+|..|..|+..+-..+|.+.||+.+.|+.||+++++......+.
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~rs 617 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVERS 617 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhccC
Confidence 78899999999999999999999999999999999999999998875543
No 70
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=89.17 E-value=0.17 Score=45.21 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccchhh
Q 000448 44 LETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRL 85 (1497)
Q Consensus 44 l~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRa 85 (1497)
+..|+.+|...+++.......|..+.+|+..||+.||-.|+.
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~~ 51 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERMQ 51 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS-
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhcc
Confidence 456999999999999999999999999999999999976543
No 71
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.91 E-value=3.3 Score=46.94 Aligned_cols=8 Identities=50% Similarity=0.804 Sum_probs=4.5
Q ss_pred chhHHhHH
Q 000448 742 TVLELADK 749 (1497)
Q Consensus 742 ~v~e~a~~ 749 (1497)
.|.|||.+
T Consensus 276 SIaelAe~ 283 (299)
T KOG3054|consen 276 SIAELAEK 283 (299)
T ss_pred eHHHHHHh
Confidence 45666653
No 72
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.35 E-value=75 Score=39.40 Aligned_cols=7 Identities=57% Similarity=0.691 Sum_probs=3.2
Q ss_pred CCcchhh
Q 000448 721 TPGTVKF 727 (1497)
Q Consensus 721 ~pgt~k~ 727 (1497)
.|||=|-
T Consensus 392 PPGTGKT 398 (630)
T KOG0742|consen 392 PPGTGKT 398 (630)
T ss_pred CCCCCch
Confidence 3455443
No 73
>PRK00106 hypothetical protein; Provisional
Probab=88.21 E-value=40 Score=43.43 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHh
Q 000448 954 LNALVALIGIAN 965 (1497)
Q Consensus 954 l~aL~aLc~l~l 965 (1497)
+-.++.++|.+.
T Consensus 431 ~a~IV~~AD~ls 442 (535)
T PRK00106 431 IAVIVAAADALS 442 (535)
T ss_pred HHHHHHHHHHhc
Confidence 455555555544
No 74
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=75 Score=39.39 Aligned_cols=19 Identities=0% Similarity=0.057 Sum_probs=9.4
Q ss_pred HhchhhHHHHHHHHHHHHH
Q 000448 964 ANEGNSIRAVLEDRLEAAN 982 (1497)
Q Consensus 964 ~l~t~sIR~~LEerlE~~~ 982 (1497)
+|+...++..++..|++-+
T Consensus 599 vLd~~lf~e~v~ykv~eHq 617 (630)
T KOG0742|consen 599 VLDEALFDERVDYKVQEHQ 617 (630)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 75
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=87.06 E-value=44 Score=42.96 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhcC
Q 000448 582 LLGEIHLALLKSIIKD 597 (1497)
Q Consensus 582 LL~Eih~aLLk~i~~d 597 (1497)
+=-||-..-|..|+.|
T Consensus 255 ~rreia~~~l~~li~d 270 (514)
T TIGR03319 255 VRREIARMALEKLIQD 270 (514)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3345555555555554
No 76
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=86.33 E-value=0.5 Score=56.94 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=48.9
Q ss_pred CCCCCCcCCHHHHHHHHHHH-h--hcCCCCHHHHHHHHHHhCCCcccccccccchhhhhhh
Q 000448 32 GKPKRQMKTPFQLETLEKAY-A--SETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1497)
Q Consensus 32 ~rr~Rt~ft~~Ql~~Le~~F-~--~~~yPs~~~R~eLA~~LgLte~qVqvWFQNRRaK~Kr 89 (1497)
.+|++..+......+|+... + ..+||+..++..||.++||+..||.+||-|.|-+..+
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCC
Confidence 55566688888888888663 2 3589999999999999999999999999999887665
No 77
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.43 E-value=1.2e+02 Score=39.28 Aligned_cols=10 Identities=30% Similarity=0.232 Sum_probs=4.1
Q ss_pred HHHHHHHHHh
Q 000448 956 ALVALIGIAN 965 (1497)
Q Consensus 956 aL~aLc~l~l 965 (1497)
.|+.++|.+.
T Consensus 412 ~IV~~AD~ls 421 (514)
T TIGR03319 412 VLVAAADALS 421 (514)
T ss_pred HHHHHHHHhc
Confidence 3444444433
No 78
>PRK12704 phosphodiesterase; Provisional
Probab=85.11 E-value=53 Score=42.27 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=6.0
Q ss_pred ccCCCHHHHHHHH
Q 000448 563 LWPFTLDEFVQAF 575 (1497)
Q Consensus 563 L~pFTlddf~~AL 575 (1497)
+.||..++++...
T Consensus 279 i~P~~iee~~~~~ 291 (520)
T PRK12704 279 IHPARIEEMVEKA 291 (520)
T ss_pred cCCCCHHHHHHHH
Confidence 3455544444433
No 79
>PRK12704 phosphodiesterase; Provisional
Probab=84.85 E-value=1.2e+02 Score=39.13 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhcC
Q 000448 585 EIHLALLKSIIKD 597 (1497)
Q Consensus 585 Eih~aLLk~i~~d 597 (1497)
|+-..-|..|+.|
T Consensus 264 e~a~~~l~~l~~d 276 (520)
T PRK12704 264 EIARLALEKLVQD 276 (520)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555554
No 80
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=79.48 E-value=1.9e+02 Score=38.81 Aligned_cols=12 Identities=33% Similarity=0.756 Sum_probs=8.2
Q ss_pred CCCCCCCcCCHH
Q 000448 31 QGKPKRQMKTPF 42 (1497)
Q Consensus 31 k~rr~Rt~ft~~ 42 (1497)
+-|-.|+.+|+.
T Consensus 140 qdR~DR~lltPW 151 (988)
T KOG2072|consen 140 QDRSDRELLTPW 151 (988)
T ss_pred ccccchHHHHHH
Confidence 456668877775
No 81
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=77.30 E-value=28 Score=43.51 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=8.9
Q ss_pred HHHHHHhhCCCCccCC
Q 000448 172 IACVEAQLGEPLREDG 187 (1497)
Q Consensus 172 ia~v~~~lg~~~~~~g 187 (1497)
|+.+.+..+.+....|
T Consensus 117 igLy~vir~ma~~~~G 132 (429)
T PRK00247 117 LGLYQVLLRMARPEGG 132 (429)
T ss_pred HHHHHHHHhccccCCc
Confidence 5556666666643333
No 82
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.17 E-value=1.4e+02 Score=34.87 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=4.7
Q ss_pred ccchhhhccCch
Q 000448 686 EDIVSTIRNGSA 697 (1497)
Q Consensus 686 ed~~~~~~~g~~ 697 (1497)
...+..+|.|++
T Consensus 225 y~tl~~i~~g~t 236 (246)
T PF00769_consen 225 YKTLRQIRQGNT 236 (246)
T ss_dssp HHHHHHHT-S-H
T ss_pred HHHHHHHhcCCH
Confidence 334444555554
No 83
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=73.14 E-value=18 Score=44.32 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=5.5
Q ss_pred CCCCCCCCCCC
Q 000448 242 YQSLSDQPYFH 252 (1497)
Q Consensus 242 ~qf~P~~~~~~ 252 (1497)
|++.+.|+.||
T Consensus 73 Yp~v~vPs~ff 83 (506)
T KOG2507|consen 73 YPYVSVPSIFF 83 (506)
T ss_pred cccccccceee
Confidence 44444455555
No 84
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.68 E-value=3.2e+02 Score=36.04 Aligned_cols=9 Identities=44% Similarity=0.848 Sum_probs=6.6
Q ss_pred HHHHHHhhc
Q 000448 807 ARKKIRIFE 815 (1497)
Q Consensus 807 ~~~~~~~~~ 815 (1497)
-|+||+-|.
T Consensus 1066 ~rekIkqF~ 1074 (1187)
T KOG0579|consen 1066 MREKIKQFD 1074 (1187)
T ss_pred HHHHHHHHH
Confidence 577888775
No 85
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=72.61 E-value=1e+02 Score=37.06 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=5.3
Q ss_pred CCCCCCCCCCc
Q 000448 129 GSGSSPYLMEL 139 (1497)
Q Consensus 129 ~~gssP~~~~~ 139 (1497)
.+|.+||+|..
T Consensus 213 ~~GPPP~~~~Q 223 (498)
T KOG4849|consen 213 RSGPPPLMMQQ 223 (498)
T ss_pred CCCCCCccccc
Confidence 34445665433
No 86
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.62 E-value=1.2e+02 Score=40.61 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=25.9
Q ss_pred cchHHHHHHHhHHHHHHhcCChhhhhh-hhhhhhhHHHHHhhcccCCHHHHH
Q 000448 1356 SLPLGIRLLKPLSAVIEAYIPPEALEA-SWTDERRKTWGMKLNMSSSAEEVL 1406 (1497)
Q Consensus 1356 ~~~~~~~~Lk~~l~~iE~~~p~~al~~-~w~~~~rk~W~~~l~~~ss~~el~ 1406 (1497)
.||--|.+|=.-+++|.= .++|.+ .-+.+.|=-|...| ++=+++++.
T Consensus 807 ILPeslKLlPly~la~lK---s~~l~~~~~~~DdRi~~~~~v-~sl~v~~~~ 854 (1007)
T KOG1984|consen 807 ILPESLKLLPLYMLALLK---SSALRPQEIRTDDRIYQLQLV-TSLSVEQLM 854 (1007)
T ss_pred echhhhHHHHHHHHHHHH---hhcccccccccchhHHHHHHh-hcccHHhhh
Confidence 467777777777777663 355664 22333244444444 444555543
No 87
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=71.14 E-value=11 Score=45.39 Aligned_cols=9 Identities=33% Similarity=0.756 Sum_probs=4.3
Q ss_pred ccccccccc
Q 000448 74 RQLQMWFCH 82 (1497)
Q Consensus 74 ~qVqvWFQN 82 (1497)
+.+..||.-
T Consensus 30 ~~A~~w~~~ 38 (321)
T PF07946_consen 30 RIAKAWFES 38 (321)
T ss_pred HHHHHHHHH
Confidence 344556543
No 88
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=70.17 E-value=15 Score=44.36 Aligned_cols=6 Identities=33% Similarity=0.335 Sum_probs=2.9
Q ss_pred CCCCCC
Q 000448 201 AFGAPI 206 (1497)
Q Consensus 201 ~F~~pi 206 (1497)
+|-.-|
T Consensus 126 ~fV~Ai 131 (321)
T PF07946_consen 126 PFVFAI 131 (321)
T ss_pred ceEEEE
Confidence 355445
No 89
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=69.05 E-value=84 Score=38.37 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=4.2
Q ss_pred CCHHHHHHHH
Q 000448 566 FTLDEFVQAF 575 (1497)
Q Consensus 566 FTlddf~~AL 575 (1497)
.+|++|-.-|
T Consensus 416 ~~leefkrri 425 (442)
T PF06637_consen 416 ASLEEFKRRI 425 (442)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 90
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.59 E-value=66 Score=37.78 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000448 467 ATARKMA 473 (1497)
Q Consensus 467 ~~~~~~a 473 (1497)
.+++|++
T Consensus 169 DKaeRka 175 (290)
T KOG2689|consen 169 DKAERKA 175 (290)
T ss_pred hHHHHHH
Confidence 3333333
No 91
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=64.17 E-value=7.8 Score=34.36 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=35.1
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCcccccccccch
Q 000448 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHR 83 (1497)
Q Consensus 33 rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLte~qVqvWFQNR 83 (1497)
|++|..+|-.+-..+-..++... ....||..+|++..+|..|..|+
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 57899999988887777777766 57889999999999999999885
No 92
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=63.72 E-value=3.5e+02 Score=34.00 Aligned_cols=9 Identities=44% Similarity=0.936 Sum_probs=5.3
Q ss_pred hhccCCCCH
Q 000448 641 QQLLNPLTW 649 (1497)
Q Consensus 641 ~~~Ld~lTw 649 (1497)
.+.+||.+|
T Consensus 409 G~pvnP~pW 417 (420)
T COG4942 409 GQPVNPQPW 417 (420)
T ss_pred CCcCCchhh
Confidence 345666666
No 93
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=58.13 E-value=2.4e+02 Score=38.39 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=9.6
Q ss_pred hhhhcccccCCCHHHHH
Q 000448 556 TFADVLGLWPFTLDEFV 572 (1497)
Q Consensus 556 ~F~~~L~L~pFTlddf~ 572 (1497)
.+...|.|-.++.|+=.
T Consensus 691 ~~~~~ldl~G~~~~eA~ 707 (771)
T TIGR01069 691 EASLTLDLRGQRSEEAL 707 (771)
T ss_pred CCCceEECCCCCHHHHH
Confidence 45556666666665543
No 94
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=57.16 E-value=58 Score=40.78 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHhcC
Q 000448 581 RLLGEIHLALLKSIIKD 597 (1497)
Q Consensus 581 ~LL~Eih~aLLk~i~~d 597 (1497)
.-|.++|..+|.+|--+
T Consensus 508 ~tl~sv~~~~lcaidqe 524 (708)
T KOG3654|consen 508 ETLESVHSGLLCAIDQE 524 (708)
T ss_pred CChHhhhhhhhcccccc
Confidence 45678888887776433
No 95
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=56.85 E-value=3.6 Score=45.79 Aligned_cols=40 Identities=8% Similarity=0.249 Sum_probs=20.9
Q ss_pred HhHhhhhcccccC-CCHHHHHHHHhccCchHHHHHHHHHHHHHhcC
Q 000448 553 FFITFADVLGLWP-FTLDEFVQAFHDHESRLLGEIHLALLKSIIKD 597 (1497)
Q Consensus 553 FL~~F~~~L~L~p-FTlddf~~AL~~~~s~LL~Eih~aLLk~i~~d 597 (1497)
+|..|-+.+...- ..|+||...+.-.....+ .-++.|..+
T Consensus 100 lL~~Fi~yIK~~Kvv~ledla~~f~l~t~~~i-----~ri~~L~~~ 140 (188)
T PF09756_consen 100 LLQEFINYIKEHKVVNLEDLAAEFGLRTQDVI-----NRIQELEAE 140 (188)
T ss_dssp HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcceeeHHHHHHHcCCCHHHHH-----HHHHHHHHC
Confidence 5556666666654 468888888875543333 344445444
No 96
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.62 E-value=6.5e+02 Score=33.96 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=7.6
Q ss_pred HHHHHHHhCCCcc
Q 000448 62 RAELSEKLGLSDR 74 (1497)
Q Consensus 62 R~eLA~~LgLte~ 74 (1497)
|---|.++|.+.-
T Consensus 152 ~~~~ah~igypvv 164 (697)
T PF09726_consen 152 RPFAAHCIGYPVV 164 (697)
T ss_pred ccHHHhhcCCcee
Confidence 3344777776643
No 97
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.41 E-value=1.5e+02 Score=40.36 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=11.9
Q ss_pred hhhhcccccCCCHHHHHH
Q 000448 556 TFADVLGLWPFTLDEFVQ 573 (1497)
Q Consensus 556 ~F~~~L~L~pFTlddf~~ 573 (1497)
.+...|+|-.++.|+-..
T Consensus 702 ~~~~~lDL~G~~~eeA~~ 719 (782)
T PRK00409 702 TVSLELDLRGMRYEEALE 719 (782)
T ss_pred CCCceEECCCCCHHHHHH
Confidence 456677777888766543
No 98
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=55.11 E-value=97 Score=38.42 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=5.5
Q ss_pred CCHHHHHHHHh
Q 000448 566 FTLDEFVQAFH 576 (1497)
Q Consensus 566 FTlddf~~AL~ 576 (1497)
||=+|+..-|.
T Consensus 366 ft~eDy~Ktll 376 (506)
T KOG2507|consen 366 FTDEDYDKTLL 376 (506)
T ss_pred ccchhhhhhHH
Confidence 55555544443
No 99
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=54.79 E-value=52 Score=41.91 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=7.6
Q ss_pred CHHHHHHHHhc
Q 000448 567 TLDEFVQAFHD 577 (1497)
Q Consensus 567 Tlddf~~AL~~ 577 (1497)
.|+.|..||..
T Consensus 389 rleqyt~a~~~ 399 (492)
T PF02029_consen 389 RLEQYTSAIES 399 (492)
T ss_pred hHHHHHHHhhc
Confidence 47777777763
No 100
>PTZ00491 major vault protein; Provisional
Probab=54.74 E-value=3.6e+02 Score=36.72 Aligned_cols=6 Identities=50% Similarity=0.551 Sum_probs=2.5
Q ss_pred HHHhhC
Q 000448 175 VEAQLG 180 (1497)
Q Consensus 175 v~~~lg 180 (1497)
|+..|.
T Consensus 421 ve~lL~ 426 (850)
T PTZ00491 421 VEELLA 426 (850)
T ss_pred HHHHHh
Confidence 344444
No 101
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.69 E-value=3.5e+02 Score=36.89 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=5.4
Q ss_pred HHHHHhhCCCCc
Q 000448 173 ACVEAQLGEPLR 184 (1497)
Q Consensus 173 a~v~~~lg~~~~ 184 (1497)
.++=+|.|.+.+
T Consensus 350 ~~~maq~G~~vp 361 (782)
T PRK00409 350 AALMAKSGLPIP 361 (782)
T ss_pred HHHHHHhCCCcc
Confidence 334455554433
No 102
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=54.12 E-value=54 Score=41.78 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=4.7
Q ss_pred chhhhhhhc
Q 000448 82 HRRLKDKKE 90 (1497)
Q Consensus 82 NRRaK~Kr~ 90 (1497)
-||++..|+
T Consensus 12 RRRARqeR~ 20 (492)
T PF02029_consen 12 RRRARQERL 20 (492)
T ss_pred HHHHHHHHH
Confidence 355655553
No 103
>PLN03086 PRLI-interacting factor K; Provisional
Probab=52.68 E-value=78 Score=41.04 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=6.0
Q ss_pred ccchhhHHhh
Q 000448 1331 KFSEHSIQCE 1340 (1497)
Q Consensus 1331 ~~s~h~~~c~ 1340 (1497)
+...|-.+|-
T Consensus 529 ~Lt~HE~~CG 538 (567)
T PLN03086 529 GMSEHESICG 538 (567)
T ss_pred hHHHHHHhcC
Confidence 5556666663
No 104
>PRK12705 hypothetical protein; Provisional
Probab=52.46 E-value=6.4e+02 Score=32.68 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhcC
Q 000448 585 EIHLALLKSIIKD 597 (1497)
Q Consensus 585 Eih~aLLk~i~~d 597 (1497)
|+-..-|..|+.+
T Consensus 252 eia~~~l~~Li~d 264 (508)
T PRK12705 252 EIARLTLEKLLAD 264 (508)
T ss_pred HHHHHHHHHHHhc
Confidence 3333334444443
No 105
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=52.15 E-value=4.6 Score=30.47 Aligned_cols=23 Identities=30% Similarity=0.875 Sum_probs=18.7
Q ss_pred CCCCcccccccCCCCCcccchhhHHhh
Q 000448 1314 AHCPSCHRTFGAVDKSSKFSEHSIQCE 1340 (1497)
Q Consensus 1314 ~hc~~cH~tf~~~d~~~~~s~h~~~c~ 1340 (1497)
..|+.|.++|.. ..+..|...|+
T Consensus 3 ~~C~~CgR~F~~----~~l~~H~~~C~ 25 (25)
T PF13913_consen 3 VPCPICGRKFNP----DRLEKHEKICK 25 (25)
T ss_pred CcCCCCCCEECH----HHHHHHHHhcC
Confidence 479999999964 57888988884
No 106
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=51.82 E-value=9.2e+02 Score=34.28 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=6.5
Q ss_pred eeEEecCCCcEEEEc
Q 000448 1145 RIFVELHDGTWRLID 1159 (1497)
Q Consensus 1145 ri~VE~~~g~W~~y~ 1159 (1497)
+|||=...++-.+|+
T Consensus 1124 ~~~V~~s~~~~l~~~ 1138 (1317)
T KOG0612|consen 1124 RIYVIVSSKKILFYV 1138 (1317)
T ss_pred eeEEeecccceEeee
Confidence 344444444444444
No 107
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.84 E-value=6.3e+02 Score=31.80 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=28.5
Q ss_pred hhhHHHHhHhhhhccc--ccCCCHHHHHHHHhccCc------hHHHHHHHHHH
Q 000448 547 LLMVWRFFITFADVLG--LWPFTLDEFVQAFHDHES------RLLGEIHLALL 591 (1497)
Q Consensus 547 lL~Vw~FL~~F~~~L~--L~pFTlddf~~AL~~~~s------~LL~Eih~aLL 591 (1497)
++..|.|+.+|..-|- ++.++=|+|.+||..... -+++.|..+++
T Consensus 440 ~lkn~ha~~~~~~Slaaeid~~sqdeLmqafqeqeeiNfRL~~yid~iilnii 492 (502)
T KOG0982|consen 440 FLKNWHATFSLFFSLAAEIDEMSQDELMQAFQEQEEINFRLKFYIDFIILNII 492 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Confidence 4556777766665553 466788999999996433 24555544443
No 108
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=48.72 E-value=6.5e+02 Score=31.62 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=3.2
Q ss_pred CCCCCC
Q 000448 201 AFGAPI 206 (1497)
Q Consensus 201 ~F~~pi 206 (1497)
+|++||
T Consensus 342 ~~~sp~ 347 (518)
T KOG1830|consen 342 LMNSPI 347 (518)
T ss_pred cccCCC
Confidence 455555
No 109
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=45.71 E-value=7.3e+02 Score=31.37 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.6
Q ss_pred hHhhhhccc
Q 000448 554 FITFADVLG 562 (1497)
Q Consensus 554 L~~F~~~L~ 562 (1497)
|+.||+..+
T Consensus 308 l~rFG~~~~ 316 (420)
T COG4942 308 LRRFGQADG 316 (420)
T ss_pred HHHhcccCC
Confidence 455555444
No 110
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.30 E-value=5e+02 Score=35.39 Aligned_cols=19 Identities=16% Similarity=0.522 Sum_probs=8.2
Q ss_pred hhhhhhHHHHhHhhhhcccc
Q 000448 544 VGNLLMVWRFFITFADVLGL 563 (1497)
Q Consensus 544 v~dlL~Vw~FL~~F~~~L~L 563 (1497)
+||.+.| ..++.-|.++.+
T Consensus 627 ~Gd~V~v-~~~~~~g~v~~i 645 (771)
T TIGR01069 627 IGDKVRI-RYFGQKGKIVQI 645 (771)
T ss_pred CCCEEEE-ccCCceEEEEEE
Confidence 4444333 224444555554
No 111
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=44.05 E-value=9.7e+02 Score=32.35 Aligned_cols=11 Identities=45% Similarity=0.516 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 000448 346 DAEQRMEKKRK 356 (1497)
Q Consensus 346 ~e~~k~e~~rk 356 (1497)
....++|..-+
T Consensus 418 ~a~~rLE~dvk 428 (697)
T PF09726_consen 418 DAISRLEADVK 428 (697)
T ss_pred HHHHHHHHHHH
Confidence 34445554433
No 112
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=43.46 E-value=15 Score=44.96 Aligned_cols=45 Identities=22% Similarity=0.606 Sum_probs=32.7
Q ss_pred HHHHHhhhccccchhhhccccchhccccccccccccccCc-cCCCCCcccccc
Q 000448 1272 QWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLC-EDAHCPSCHRTF 1323 (1497)
Q Consensus 1272 ~~w~w~~~~~~~~~~a~k~g~k~~~~~l~~c~~c~~~y~~-~e~hc~~cH~tf 1323 (1497)
..|+|...+- ..+.-...+-+..|..||-..-. ++-+|+.||..-
T Consensus 200 ~~~lwe~~~p-------q~~~~~~~~~~~~C~~C~~~~~~~~~~~CpRC~~~L 245 (418)
T COG2995 200 RRWLWERFYP-------QTLATGAREGLRSCLCCHYILPHDAEPRCPRCGSKL 245 (418)
T ss_pred HHHHHHhhcc-------ccCCCCCcccceecccccccCCHhhCCCCCCCCChh
Confidence 4799997664 12224566778889999986555 899999999443
No 113
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=43.30 E-value=88 Score=39.71 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=3.9
Q ss_pred ccccccccCC
Q 000448 219 YESKIYDRYD 228 (1497)
Q Consensus 219 ~~~~~~~~~~ 228 (1497)
|...++++|.
T Consensus 147 f~~~f~~ry~ 156 (460)
T KOG1363|consen 147 FVDNFGDRYG 156 (460)
T ss_pred HHHHHHHhcC
Confidence 3333444433
No 114
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.58 E-value=7.5e+02 Score=30.34 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 000448 200 DAFGAPI 206 (1497)
Q Consensus 200 ~~F~~pi 206 (1497)
--|-+|.
T Consensus 86 ~c~VnPT 92 (365)
T KOG2391|consen 86 ICYVNPT 92 (365)
T ss_pred eEEecCC
Confidence 3344443
No 115
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=40.05 E-value=2.9e+02 Score=35.61 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=10.4
Q ss_pred cCCCCCCC--CCCCCCCcccccCC
Q 000448 194 FDSLPPDA--FGAPIGSSEQQKRS 215 (1497)
Q Consensus 194 fdplpp~~--F~~pi~~~~q~k~p 215 (1497)
|+-|-+.. ..+||-++|-..-|
T Consensus 105 F~~LG~~~~~idhPIilTE~laNP 128 (645)
T KOG0681|consen 105 FGKLGVDGQGIDHPIILTEALANP 128 (645)
T ss_pred HHhcCCCccCCCCCeeeehhccCh
Confidence 44444432 45666555544444
No 116
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=38.97 E-value=9e+02 Score=30.47 Aligned_cols=6 Identities=17% Similarity=0.185 Sum_probs=2.3
Q ss_pred CCCCCC
Q 000448 271 PSSRVH 276 (1497)
Q Consensus 271 ~~~~~~ 276 (1497)
+.+.|+
T Consensus 391 p~p~~~ 396 (518)
T KOG1830|consen 391 PLPQGA 396 (518)
T ss_pred CCCccc
Confidence 333333
No 117
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=38.48 E-value=3.8e+02 Score=34.07 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=14.4
Q ss_pred CCCCCCCCCcccCCCCCCcCCCCCChh
Q 000448 516 DSLSVFPPKTVRLKRPFSVQPWSDSEE 542 (1497)
Q Consensus 516 ~~Lp~fPp~~v~lk~P~ps~p~~~p~e 542 (1497)
..+..+|+.......|.+..--..+-+
T Consensus 152 ~~l~~~~~~~~~~~~~~~~~m~~~sr~ 178 (445)
T PRK13428 152 DELDAMAPSTADVDYPLLAKMRSASRR 178 (445)
T ss_pred HHhhccCCCchhhcCchhhhhhHhhHH
Confidence 344456666666667776553333333
No 118
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.12 E-value=1.4e+03 Score=32.50 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=11.2
Q ss_pred chhhHHHHHHHHhcCCC
Q 000448 696 SAAENAFAWMREKGLLL 712 (1497)
Q Consensus 696 ~~~~~~~~~m~~~g~~~ 712 (1497)
..|-+.++.+++++++.
T Consensus 652 e~aq~cI~fl~~~nLgr 668 (1293)
T KOG0996|consen 652 ETAQECINFLKKNNLGR 668 (1293)
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 34456788888888443
No 119
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=37.96 E-value=15 Score=41.59 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=26.3
Q ss_pred hhccccccccccccccCccCCCCCccccccc
Q 000448 1294 RCRQLLVICDVCLDSYLCEDAHCPSCHRTFG 1324 (1497)
Q Consensus 1294 ~~~~~l~~c~~c~~~y~~~e~hc~~cH~tf~ 1324 (1497)
+-+..--+|.+|+-.+-+--.||+.||.-|.
T Consensus 255 rvv~~GfvCsVCLsvfc~p~~~C~~C~skF~ 285 (296)
T COG5242 255 RVVLLGFVCSVCLSVFCRPVPVCKKCKSKFS 285 (296)
T ss_pred cEEEEeeehhhhheeecCCcCcCcccccccc
Confidence 4556667899999999999999999997664
No 120
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.36 E-value=1.3e+03 Score=31.88 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcccCCcchHHHHHHHHHHHHHH
Q 000448 1161 VEAFDALLSSLDARGTRESHLRIMLQKIETSF 1192 (1497)
Q Consensus 1161 ~e~ld~Ll~~L~~rG~RE~~L~~~L~~~~~~i 1192 (1497)
.+.|+++...|.. .|..+-..+......|
T Consensus 1007 ~ek~ee~~a~lr~---Ke~efeetmdaLq~di 1035 (1243)
T KOG0971|consen 1007 QEKLEETQALLRK---KEKEFEETMDALQADI 1035 (1243)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3445555444432 2445555444444444
No 121
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=37.31 E-value=10 Score=31.04 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=18.8
Q ss_pred ccccccccccCccC---------CCCCccccccc
Q 000448 1300 VICDVCLDSYLCED---------AHCPSCHRTFG 1324 (1497)
Q Consensus 1300 ~~c~~c~~~y~~~e---------~hc~~cH~tf~ 1324 (1497)
..|+.|...|.-++ ..|+.||.+|.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 57888888766553 48999998774
No 122
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=37.24 E-value=7.7e+02 Score=29.23 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=5.2
Q ss_pred hCCCCccCCCCcc
Q 000448 179 LGEPLREDGPILG 191 (1497)
Q Consensus 179 lg~~~~~~gp~lg 191 (1497)
|+--.+...|+.+
T Consensus 18 ~~~~~~~~~p~~~ 30 (269)
T KOG3119|consen 18 LGQRARPLPPVFG 30 (269)
T ss_pred ccccccCCCCCCc
Confidence 3333344444444
No 123
>PHA03247 large tegument protein UL36; Provisional
Probab=36.09 E-value=1.6e+03 Score=34.98 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=3.4
Q ss_pred HHHHHHhC
Q 000448 654 RQLALSAG 661 (1497)
Q Consensus 654 Rq~~la~G 661 (1497)
|+|+-++|
T Consensus 3100 RrY~r~Tg 3107 (3151)
T PHA03247 3100 RRYVRSTG 3107 (3151)
T ss_pred HHHHhhcc
Confidence 44444443
No 124
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=35.99 E-value=8.7e+02 Score=30.21 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=8.4
Q ss_pred HHHHHHHHhCCCc
Q 000448 61 TRAELSEKLGLSD 73 (1497)
Q Consensus 61 ~R~eLA~~LgLte 73 (1497)
.+..|+..||+|-
T Consensus 80 ~~~NLtkeLN~t~ 92 (442)
T PF06637_consen 80 SQANLTKELNLTT 92 (442)
T ss_pred HhhHHHHHhchhH
Confidence 4556777777663
No 125
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=35.01 E-value=1.1e+02 Score=40.70 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=6.5
Q ss_pred HHHHHHHhcCcc
Q 000448 588 LALLKSIIKDIE 599 (1497)
Q Consensus 588 ~aLLk~i~~d~e 599 (1497)
|.|||+||.-.+
T Consensus 488 ~~llKFlVg~kg 499 (1194)
T KOG4246|consen 488 CNLLKFLVGKKG 499 (1194)
T ss_pred HHHHHHHHhccC
Confidence 556666655433
No 126
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=34.73 E-value=28 Score=43.53 Aligned_cols=29 Identities=31% Similarity=0.610 Sum_probs=24.1
Q ss_pred hccccccccccccccCccCCCCCcccccc
Q 000448 1295 CRQLLVICDVCLDSYLCEDAHCPSCHRTF 1323 (1497)
Q Consensus 1295 ~~~~l~~c~~c~~~y~~~e~hc~~cH~tf 1323 (1497)
-.+-+..|+.|+-++-.+..||++||.+.
T Consensus 217 ~~~~l~~C~~Cd~l~~~~~a~CpRC~~~L 245 (419)
T PRK15103 217 LRQGLRSCSCCTAILPADQPVCPRCHTKG 245 (419)
T ss_pred cccCCCcCCCCCCCCCCCCCCCCCCCCcC
Confidence 34557789999999877888999999776
No 127
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.41 E-value=1.4e+02 Score=37.16 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=8.5
Q ss_pred ccccccccchhhhhh
Q 000448 74 RQLQMWFCHRRLKDK 88 (1497)
Q Consensus 74 ~qVqvWFQNRRaK~K 88 (1497)
+.-+-||+-.|.-..
T Consensus 133 klA~~wF~s~~s~le 147 (440)
T KOG2357|consen 133 KLAQAWFGSLRSLLE 147 (440)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334567766665544
No 128
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.07 E-value=6.4e+02 Score=30.26 Aligned_cols=6 Identities=50% Similarity=0.977 Sum_probs=2.9
Q ss_pred CCCCCC
Q 000448 201 AFGAPI 206 (1497)
Q Consensus 201 ~F~~pi 206 (1497)
+||-.|
T Consensus 104 GfGDQi 109 (406)
T KOG3859|consen 104 GFGDQI 109 (406)
T ss_pred cccccc
Confidence 455544
No 129
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=30.89 E-value=1.3e+02 Score=35.71 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhchhhHH
Q 000448 950 VEERLNALVALIGIANEGNSIR 971 (1497)
Q Consensus 950 veeKl~aL~aLc~l~l~t~sIR 971 (1497)
++.-++|++-|-+.-..+.+|+
T Consensus 339 ~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 339 VESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhcCCceecceeee
Confidence 4444555555555555555554
No 130
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=30.84 E-value=1.3e+03 Score=30.67 Aligned_cols=29 Identities=10% Similarity=-0.066 Sum_probs=15.0
Q ss_pred CCCCCcCCcCCccchHHHHHHHHHHHhhC
Q 000448 152 DMPIVRRSYESQQSIMELRAIACVEAQLG 180 (1497)
Q Consensus 152 ~~~~~~~yy~p~~~~~e~~aia~v~~~lg 180 (1497)
.|++-+-||.+......-..+-.|.+--|
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g 65 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSG 65 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCC
Confidence 33444556666544444445555555544
No 131
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=30.75 E-value=1.7e+03 Score=31.15 Aligned_cols=8 Identities=38% Similarity=0.243 Sum_probs=4.4
Q ss_pred HHHHHHHH
Q 000448 649 WHEIFRQL 656 (1497)
Q Consensus 649 wpEiLRq~ 656 (1497)
|=|+.|.|
T Consensus 762 ~~e~~~r~ 769 (982)
T PF03154_consen 762 PLEHFRRH 769 (982)
T ss_pred cchhhhcc
Confidence 44555555
No 132
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=30.58 E-value=36 Score=34.54 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=22.3
Q ss_pred ccCCcccCCCceeeeccCCCCCCCCCCeeEEecC
Q 000448 1118 LPLGQDRRRNRYWQFATSASRNDPCSGRIFVELH 1151 (1497)
Q Consensus 1118 ~pLG~DR~~nRYW~f~~s~s~~d~g~~ri~VE~~ 1151 (1497)
.++|.|-++|+||-+. .++.+..+=||+..
T Consensus 2 ~lVG~D~~GN~YyE~~----~~~~~~~rRwV~y~ 31 (105)
T PF05071_consen 2 TLVGTDEFGNKYYENP----RDEQGRRRRWVEYA 31 (105)
T ss_pred CEeeEeCCCCEEEeec----CCCcCCCcEEEEcC
Confidence 4689999999999997 23445566777753
No 133
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.69 E-value=1.8e+03 Score=31.17 Aligned_cols=9 Identities=22% Similarity=-0.164 Sum_probs=3.8
Q ss_pred cccccccch
Q 000448 75 QLQMWFCHR 83 (1497)
Q Consensus 75 qVqvWFQNR 83 (1497)
+.--|-|+|
T Consensus 699 ~~P~~~~~~ 707 (1049)
T KOG0307|consen 699 QSPPLTQLR 707 (1049)
T ss_pred cCCCccccc
Confidence 333444443
No 134
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=29.15 E-value=1.1e+03 Score=31.40 Aligned_cols=7 Identities=0% Similarity=-0.026 Sum_probs=3.8
Q ss_pred CCCCCCC
Q 000448 241 EYQSLSD 247 (1497)
Q Consensus 241 ~~qf~P~ 247 (1497)
-+.|+|.
T Consensus 126 ~~~f~p~ 132 (668)
T KOG2253|consen 126 SHKFVPS 132 (668)
T ss_pred hcccCCc
Confidence 3556665
No 135
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.95 E-value=2e+03 Score=31.44 Aligned_cols=157 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000448 345 NDAEQRMEKKRKCDEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLRE- 423 (1497)
Q Consensus 345 ~~e~~k~e~~rk~eeer~~ke~e~~eer~~kE~erqe~errkeEEr~rkE~Er~ere~rkeeEr~~re~q~eeer~~re- 423 (1497)
+....+++............+.....+...+.+++.+..-...+.+.+.+......+.+.+..+...+..+...+....
T Consensus 383 ~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 462 (1201)
T PF12128_consen 383 NKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQ 462 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhccCCCccc
Q 000448 424 -QKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMAKESMDLIEDEQLELMDLAAASKGLSSII 501 (1497)
Q Consensus 424 -~~rEeEr~eke~eke~~r~Ek~r~kEe~rkekE~er~k~~eEr~~~~~~ake~~~~~e~E~lel~elaa~sk~l~s~~ 501 (1497)
-..+.+..+....+-....+............+.+...+..++..+...-+.....+.+.+.++.++...-.|..-++
T Consensus 463 ~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL 541 (1201)
T PF12128_consen 463 YTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSL 541 (1201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcH
No 136
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=28.92 E-value=1.4e+03 Score=29.77 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=8.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHH
Q 000448 48 EKAYASETYPSESTRAELSEK 68 (1497)
Q Consensus 48 e~~F~~~~yPs~~~R~eLA~~ 68 (1497)
..+|..+ .|....--..+..
T Consensus 33 ~d~f~~~-vP~~e~lv~~~e~ 52 (582)
T PF09731_consen 33 RDFFEEY-VPYGEELVDYIEE 52 (582)
T ss_pred HHHHHHh-CCcHHHHHHHHhh
Confidence 3334444 5555444443333
No 137
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.91 E-value=19 Score=29.69 Aligned_cols=24 Identities=29% Similarity=0.904 Sum_probs=12.6
Q ss_pred ccccccccccCccCC---------CCCcccccc
Q 000448 1300 VICDVCLDSYLCEDA---------HCPSCHRTF 1323 (1497)
Q Consensus 1300 ~~c~~c~~~y~~~e~---------hc~~cH~tf 1323 (1497)
.+|+.|+-.|--++. .|+.|+.+|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 455555555544443 466665544
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=26.63 E-value=4.3e+02 Score=36.02 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=22.7
Q ss_pred cCCccchHHHHHHHHHHHhhCCCCccCCCCcccccCC
Q 000448 160 YESQQSIMELRAIACVEAQLGEPLREDGPILGMEFDS 196 (1497)
Q Consensus 160 y~p~~~~~e~~aia~v~~~lg~~~~~~gp~lg~efdp 196 (1497)
|.+++-..-+++++|++-.-|.|+=....-+.+.|--
T Consensus 493 yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 493 YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 3444445556788888888888774444445555543
No 139
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=25.97 E-value=22 Score=29.06 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=17.2
Q ss_pred ccccccccccccccCccCCCCCccc
Q 000448 1296 RQLLVICDVCLDSYLCEDAHCPSCH 1320 (1497)
Q Consensus 1296 ~~~l~~c~~c~~~y~~~e~hc~~cH 1320 (1497)
.=.+.+|..|...+|+-...|+.||
T Consensus 8 ~l~~~rC~~Cg~~~~pPr~~Cp~C~ 32 (37)
T PF12172_consen 8 RLLGQRCRDCGRVQFPPRPVCPHCG 32 (37)
T ss_dssp -EEEEE-TTT--EEES--SEETTTT
T ss_pred EEEEEEcCCCCCEecCCCcCCCCcC
Confidence 3457899999999999999999998
No 140
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=25.75 E-value=1.3e+03 Score=29.04 Aligned_cols=126 Identities=20% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000448 368 ANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRL 447 (1497)
Q Consensus 368 ~~eer~~kE~erqe~errkeEEr~rkE~Er~ere~rkeeEr~~re~q~eeer~~re~~rEeEr~eke~eke~~r~Ek~r~ 447 (1497)
+-.+-.++-.++++...++.++-..+-..=.++.+.-+.++..+-..-.-.+...+..-+..+++.+..++...+|+.+.
T Consensus 346 K~~e~Eekl~E~nee~~~r~ee~~a~dea~~e~~~a~eAekqa~~eE~L~k~~eqEa~ienkq~~~EkARedaa~EkA~d 425 (672)
T KOG4722|consen 346 KDAEVEEKLLEKNEEFLNRFEEFLAEDEAFFEIFEAFEAEKQAFFEEFLDKFFEQEACIENKQLADEKAREDAAEEKAAD 425 (672)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 000448 448 KEELRMEKQAAKRKVAIEKATARKMAKESMDLIEDEQLELMDLAAA 493 (1497)
Q Consensus 448 kEe~rkekE~er~k~~eEr~~~~~~ake~~~~~e~E~lel~elaa~ 493 (1497)
++++....-+.++.+.++....-++.-......--++.+.++.++.
T Consensus 426 keEq~AA~TAaq~eA~EelQ~kIq~khdek~~RH~ek~e~~ke~aa 471 (672)
T KOG4722|consen 426 KEEQEAAATAAQAEAAEELQCKIQKKHDEKEIRHGEKEEPAKEAAA 471 (672)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCcccccHH
No 141
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.61 E-value=7.2e+02 Score=32.83 Aligned_cols=17 Identities=6% Similarity=-0.285 Sum_probs=9.2
Q ss_pred cccCCCCCCCCCCCCCC
Q 000448 264 SFLHANEPSSRVHGVQG 280 (1497)
Q Consensus 264 ~~~~g~~~~~~~~~~~~ 280 (1497)
+|.++.+..+..|.++.
T Consensus 564 ~~gg~~P~ip~q~~tq~ 580 (861)
T KOG3161|consen 564 EQGGRKPDIPAQYHTQK 580 (861)
T ss_pred ccCCCCCCCcccccccc
Confidence 55555555555555554
No 142
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=24.71 E-value=1.7e+03 Score=29.15 Aligned_cols=11 Identities=27% Similarity=0.123 Sum_probs=4.2
Q ss_pred hhhhHHHhhhh
Q 000448 725 VKFAAFHVLSL 735 (1497)
Q Consensus 725 ~k~~~f~vls~ 735 (1497)
+..|+=.+-.+
T Consensus 539 L~~A~~~~~~L 549 (582)
T PF09731_consen 539 LDKAARELNQL 549 (582)
T ss_pred HHHHHHHHHhC
Confidence 33444333333
No 143
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.05 E-value=1.8e+03 Score=29.43 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=3.8
Q ss_pred HHHHHHh
Q 000448 570 EFVQAFH 576 (1497)
Q Consensus 570 df~~AL~ 576 (1497)
|+..||.
T Consensus 671 d~ehalL 677 (948)
T KOG0577|consen 671 DLEHALL 677 (948)
T ss_pred HHHHHHH
Confidence 4555555
No 144
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=23.96 E-value=1.5e+03 Score=32.49 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=16.4
Q ss_pred CCcccccccccchhhhhhhcc
Q 000448 71 LSDRQLQMWFCHRRLKDKKEK 91 (1497)
Q Consensus 71 Lte~qVqvWFQNRRaK~Kr~~ 91 (1497)
+++.+|.+-|-.+-.+.++.-
T Consensus 1706 vPPk~~~~v~vE~~~v~~k~l 1726 (1958)
T KOG0391|consen 1706 VPPKQVASVRVERIAVEKKAL 1726 (1958)
T ss_pred CCchhcceeeeeccccCCcch
Confidence 678888888888888777643
No 145
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.93 E-value=1.1e+03 Score=26.67 Aligned_cols=122 Identities=27% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000448 370 EIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKE 449 (1497)
Q Consensus 370 eer~~kE~erqe~errkeEEr~rkE~Er~ere~rkeeEr~~re~q~eeer~~re~~rEeEr~eke~eke~~r~Ek~r~kE 449 (1497)
....+......+.....-.+..+++.+...++...+........+.+-++.-.+++.+..++++.........+++...-
T Consensus 22 ~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L 101 (201)
T PF12072_consen 22 KKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQL 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 000448 450 ELRMEKQAAKR-KVAIEKATARKMAKESMDLIEDEQLELMDLA 491 (1497)
Q Consensus 450 e~rkekE~er~-k~~eEr~~~~~~ake~~~~~e~E~lel~ela 491 (1497)
..+.+.-..+. .....+........+...+......++.+.+
T Consensus 102 ~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iA 144 (201)
T PF12072_consen 102 EKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 146
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=23.66 E-value=56 Score=40.76 Aligned_cols=27 Identities=26% Similarity=0.720 Sum_probs=19.9
Q ss_pred cccccccccccccC-ccCCCCCcccccc
Q 000448 1297 QLLVICDVCLDSYL-CEDAHCPSCHRTF 1323 (1497)
Q Consensus 1297 ~~l~~c~~c~~~y~-~~e~hc~~cH~tf 1323 (1497)
+-+..|+.|+-.+- ....||++||.+-
T Consensus 213 ~~~~~C~~Cd~~~~~~~~a~CpRC~~~L 240 (403)
T TIGR00155 213 LKLRSCSACHTTILPAQEPVCPRCSTPL 240 (403)
T ss_pred cCCCcCCCCCCccCCCCCcCCcCCCCcc
Confidence 34667999998443 4556999999776
No 147
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=23.24 E-value=1.4e+02 Score=36.05 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=3.8
Q ss_pred CCCCCCCCCC
Q 000448 104 VVMPESPIDE 113 (1497)
Q Consensus 104 ~~~~~ppp~~ 113 (1497)
.+++.+|...
T Consensus 227 ~P~m~~P~s~ 236 (498)
T KOG4849|consen 227 TPLMSQPTSL 236 (498)
T ss_pred CCCCCCCCCC
Confidence 3443333333
No 148
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.38 E-value=24 Score=36.31 Aligned_cols=28 Identities=25% Similarity=0.659 Sum_probs=24.1
Q ss_pred ccccccccCccCCCCCcccccccC-CCCC
Q 000448 1302 CDVCLDSYLCEDAHCPSCHRTFGA-VDKS 1329 (1497)
Q Consensus 1302 c~~c~~~y~~~e~hc~~cH~tf~~-~d~~ 1329 (1497)
|+.|.+......-+|+.|+.++.. |.+.
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~G~F~l~ 29 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIEGEFELP 29 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEEeeeccc
Confidence 999999999999999999999864 4444
No 149
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=22.25 E-value=2.2e+03 Score=29.79 Aligned_cols=173 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000448 307 SLLQRESTSNNRKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQRMEKKRKCDEARIAREVEANEIRIQKELERQDNLRRK 386 (1497)
Q Consensus 307 ~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~e~~k~e~~rk~eeer~~ke~e~~eer~~kE~erqe~errk 386 (1497)
..|+.....+.+.++. ....+.++......-...+..+...+-+..-.++..++++.-++.-..-++........+-
T Consensus 1004 ~~p~~~~~g~s~~e~~---~~~~~~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~ 1080 (1189)
T KOG1265|consen 1004 GSPSSCSGGSSGGEST---PAALNSDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQT 1080 (1189)
T ss_pred CCCCcccccCCCCCCc---hhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000448 387 NEERMRKEMEKHERERRKEEERLMRER-------QREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAK 459 (1497)
Q Consensus 387 eEEr~rkE~Er~ere~rkeeEr~~re~-------q~eeer~~re~~rEeEr~eke~eke~~r~Ek~r~kEe~rkekE~er 459 (1497)
..-++.-|.+.++-.....+.|.+.-+ +.+.+++.++.-.---++--+..+.-+....++..+-.++..+-..
T Consensus 1081 k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~le 1160 (1189)
T KOG1265|consen 1081 KALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLE 1160 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcccchH
Q 000448 460 RKVAIEKATARKMAKESMDLIED 482 (1497)
Q Consensus 460 ~k~~eEr~~~~~~ake~~~~~e~ 482 (1497)
+.++++++...+...+....+..
T Consensus 1161 ql~e~~kal~~e~~~~~e~~~~~ 1183 (1189)
T KOG1265|consen 1161 QLAEEEKALDAEAEQEYEEQMAR 1183 (1189)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhc
No 150
>COG3909 Cytochrome c556 [Energy production and conversion]
Probab=21.74 E-value=19 Score=38.01 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=8.1
Q ss_pred HHHHHhhhhHH
Q 000448 1262 KAALERFQDFQ 1272 (1497)
Q Consensus 1262 ~~~~~r~~~f~ 1272 (1497)
=..|.+.++|.
T Consensus 91 p~IWe~~~~FK 101 (147)
T COG3909 91 PAIWEDMADFK 101 (147)
T ss_pred HHHHHhHHHHH
Confidence 34788888886
No 151
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.49 E-value=2.4e+03 Score=29.45 Aligned_cols=18 Identities=6% Similarity=0.143 Sum_probs=7.8
Q ss_pred CCCCCCcccccccccCCC
Q 000448 275 VHGVQGHVARVRVLSQQD 292 (1497)
Q Consensus 275 ~~~~~~~~~~~~~~sq~~ 292 (1497)
.....+++.++...++.|
T Consensus 267 ~sdl~~~~~pvv~i~~Ep 284 (980)
T KOG0980|consen 267 QSDLESYITPVVYIPSEP 284 (980)
T ss_pred ccchhhcCCCceecCCCC
Confidence 344444444444433333
Done!