Your job contains 1 sequence.
>000449
MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH
SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP
RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED
NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV
KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP
DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT
TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD
RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI
LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG
KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG
CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR
VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP
GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR
FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA
SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV
YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR
KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS
VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR
LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSI
KPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP
SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG
DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG
QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM
IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS
KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVRNK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000449
(1497 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 2934 9.1e-306 1
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 830 9.3e-94 3
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 954 7.6e-93 1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 944 1.1e-91 1
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 928 6.8e-90 1
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 834 1.6e-89 3
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 923 2.4e-89 1
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 901 6.8e-87 1
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 901 7.0e-87 1
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein... 752 7.2e-87 3
ZFIN|ZDB-GENE-030131-4076 - symbol:pdcd11 "programmed cel... 662 6.0e-74 3
POMBASE|SPCC1183.07 - symbol:SPCC1183.07 "U3 snoRNP-assoc... 498 5.1e-57 2
CGD|CAL0005606 - symbol:orf19.1578 species:5476 "Candida ... 482 3.7e-54 3
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 212 1.1e-47 6
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve... 221 2.5e-45 4
DICTYBASE|DDB_G0286941 - symbol:DDB_G0286941 species:4468... 430 1.0e-36 1
WB|WBGene00002850 - symbol:let-716 species:6239 "Caenorha... 188 1.7e-13 3
FB|FBgn0039182 - symbol:CG5728 species:7227 "Drosophila m... 232 1.1e-11 3
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 190 5.4e-11 1
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 142 1.8e-10 4
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 106 1.1e-09 4
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 171 3.2e-09 4
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 171 4.8e-09 2
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 153 7.0e-07 1
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 162 7.7e-07 2
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 162 7.7e-07 2
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 146 8.1e-07 2
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 146 9.0e-07 3
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 127 2.7e-06 2
UNIPROTKB|Q0BZL2 - symbol:HNE_2386 "S1 RNA binding domain... 132 2.6e-05 2
UNIPROTKB|P46837 - symbol:yhgF "predicted transcriptional... 135 5.2e-05 2
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 134 6.7e-05 1
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1... 116 0.00016 2
UNIPROTKB|Q60A39 - symbol:MCA1032 "S1 RNA binding domain ... 114 0.00027 2
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 130 0.00031 2
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 2934 (1037.9 bits), Expect = 9.1e-306, P = 9.1e-306
Identities = 599/1053 (56%), Positives = 764/1053 (72%)
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIV
Sbjct: 433 FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIV 492
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
QF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL I
Sbjct: 493 QFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPI 552
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
LSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VV
Sbjct: 553 LSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVV 612
Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSK 696
KCR+ S++ ++RI L+ +K + +K K
Sbjct: 613 KCRVTSAVHGTQRITLNDSIKLGSIVSGIIDTITSQAVIVRVK-----------SKSVVK 661
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
GTI EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI A++LPSD
Sbjct: 662 GTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDF 721
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D +AD+S++++VGQSVR+NI
Sbjct: 722 NQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANI 781
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
+DVN E RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS S+ WVE F IGS
Sbjct: 782 VDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGS 841
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
+I+G + E ND GVVV+F+ ++V GFI H + GAT+ GSV+ A +LD+++AERLVDL
Sbjct: 842 LIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDL 901
Query: 937 SLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
SL+ ++ + +L VHQ V+A+VEIVKE +LVLS+PE+ ++
Sbjct: 902 SLRPELLNNLTKEVSNSSKKKRKRGISK--ELEVHQRVSAVVEIVKEQHLVLSIPEHGYT 959
Query: 997 IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXX 1056
IGYASVSDYNTQK P KQF GQSV+A+V A+ + T+GRLLLLL ++
Sbjct: 960 IGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRA 1019
Query: 1057 XX-XXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
+VGS+V AEITEIKP ELR+ FG F GRIHITEV + ++ + F+ F++GQ
Sbjct: 1020 KKKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQ 1079
Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
+++AR++AK D+KK+ LWELS+KP+ML SE E+ + + GQ V GYVYKV
Sbjct: 1080 SISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKV 1139
Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
D EW L +SR++ A++FILD++ + EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV
Sbjct: 1140 DKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQ 1199
Query: 1235 RPF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
RP +G KT I D+ FIHEGDI+GGRISKIL GVGGL VQ+GP
Sbjct: 1200 RPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGP 1259
Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
+++GRVHFTE+ + V P DPL G+ EGQFVKCKVLEIS + +GT+ +ELS
Sbjct: 1260 YVFGRVHFTEINDSWV--P---------DPLDGFREGQFVKCKVLEISSSSKGTWQIELS 1308
Query: 1344 LRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1401
LR+SLDGMSS + S DL + D K E+IEDLSP+M VQGYVKN SKGCFI+LSR
Sbjct: 1309 LRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRT 1367
Query: 1402 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1461
++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++ +SE
Sbjct: 1368 VEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESY 1427
Query: 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
+L LHVGD++ G+I+RVE +GLFI I+ T +V
Sbjct: 1428 DLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMV 1460
Score = 1805 (640.5 bits), Expect = 1.8e-194, Sum P(2) = 1.8e-194
Identities = 368/643 (57%), Positives = 453/643 (70%)
Query: 15 DGPKFNKASKNQFKNSKKQINDAVEAQDLALXXXXXXXXFPRGGGHSLTQRERDEIHAEV 74
D K K K FK +K + EA L L FPRGGG SL+++ER++++ EV
Sbjct: 15 DSTKSFKPMKKPFKKTKDDVAARSEAMALQLEDVPD---FPRGGGTSLSKKEREKLYEEV 71
Query: 75 DAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAG 134
DAEF+A ER ++++ +DDLG LFG G+ GK PRYANKIT KNIS G
Sbjct: 72 DAEFDADER---VSKKSKGGKSKKRIPSDLDDLGLLFGGGLHGKRPRYANKITTKNISPG 128
Query: 135 MKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEANEDNLLPTIFHVGQLVS 194
MKL GVV EVN+KD+VI D IE +E+ LL IF VGQLV
Sbjct: 129 MKLLGVVTEVNQKDIVI-SLPGGLRGLVRASEVSDFTDRGIEDDENELLGDIFSVGQLVP 187
Query: 195 CIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGYILHFGL 254
CIVL+LDDDKKE GKRKIW ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 188 CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 247
Query: 255 PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
PS TGF+ ++ N +K G L+QGVV IDR RK+V+LSSDPD+V+KC+TKDL G+
Sbjct: 248 PSITGFIEISDDG-NQESGMKTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSGM 306
Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
S DLL+PGMMV+ RVQS+LENG++ FLTYF GTVD+FHL+N +WK++YNQ+K VN
Sbjct: 307 SFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTVN 366
Query: 375 ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIPSTPV 434
ARILF+DP+SRAVGLTL+P+++ N+APP HV GDI+D++K +PS P
Sbjct: 367 ARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKSGLLLE-LPSKPT 425
Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
TPAYV+ +KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHS
Sbjct: 426 PTPAYVS---------------FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHS 470
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
DVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVL
Sbjct: 471 DVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVL 530
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
G KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF P
Sbjct: 531 GCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVP 590
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
R ELGL+PG +P S++HVG+VVKCR+ S++ ++RI L+ +K
Sbjct: 591 RFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLNDSIK 633
Score = 116 (45.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 47/163 (28%), Positives = 74/163 (45%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
D+ P M V+G V S G + V+A L ++ + + +P K+F VG + RVL
Sbjct: 1341 DLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVL 1400
Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRL--ITHGWITKIEKHGCFVRF-YNGV 609
V+ SKRI VT KT+ SY + + G I ++E G F+ G+
Sbjct: 1401 NVEPLSKRIEVT-LKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGM 1459
Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
G S+L D + Y G+ V+ +I+ +RI+L
Sbjct: 1460 VGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISL 1502
Score = 101 (40.6 bits), Expect = 1.8e-194, Sum P(2) = 1.8e-194
Identities = 44/180 (24%), Positives = 83/180 (46%)
Query: 967 DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
D+GV V + K +++LS + +++ D K P+K+F G+ V V+
Sbjct: 1345 DMGVQGYVKNTMS--KGCFIILSRT-VEAKVRLSNLCD-TFVKEPEKEFPVGKLVTGRVL 1400
Query: 1027 ALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFG-I 1085
+ S R+ + LK + + VG ++ I ++P L +
Sbjct: 1401 NVEPLSK--RIEVTLKTVNAGGRPKSESYDLKKLH-VGDMISGRIRRVEPFGLFIDIDQT 1457
Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
G G HI++++DD+ +EN+ + +K G++V A+I+ K D +K + L +K S L
Sbjct: 1458 GMVGLCHISQLSDDR---MENVQARYKAGESVRAKIL----KLDEEKKRI-SLGMKSSYL 1509
Score = 96 (38.9 bits), Expect = 6.1e-194, Sum P(2) = 6.1e-194
Identities = 40/169 (23%), Positives = 78/169 (46%)
Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS---IGQRV 1167
F +G+ VT R++ N + K E+++K TV+ G + E D+ +G +
Sbjct: 1389 FPVGKLVTGRVL---NVEPLSKRI--EVTLK----TVNA-GGRPKSESYDLKKLHVGDMI 1438
Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
+G + +V+ + I + L + S ++ Q R+ G++V +L +++EK
Sbjct: 1439 SGRIRRVEPFGLFIDIDQTGMVGLCHI-SQLSDDRMENVQARYKAGESVRAKILKLDEEK 1497
Query: 1228 KLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
K + L ++ +G DK +S DN E D + S++L+ V
Sbjct: 1498 KRISLGMKSSYLMNGDDDKAQPLSEDNTSM---ECDPINDPKSEVLAAV 1543
Score = 88 (36.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 31/118 (26%), Positives = 62/118 (52%)
Query: 233 GMVLTAYVKSIEDHGYILHF-GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 291
G ++ ++ D G +++F + + GF+P++++ G + PG ++ VV I R
Sbjct: 840 GSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMG---GATLVPGSVVNAVVLDISRAE 896
Query: 292 KVVYLSSDPDTVSKCVTKDL---------KGISIDLLVPGMMVSTRVQSILENGVMLS 340
++V LS P+ ++ +TK++ +GIS +L V VS V+ + E ++LS
Sbjct: 897 RLVDLSLRPELLNN-LTKEVSNSSKKKRKRGISKELEVH-QRVSAVVEIVKEQHLVLS 952
Score = 87 (35.7 bits), Expect = 5.5e-193, Sum P(2) = 5.5e-193
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
D +H ++ G + + G F+ G + G S+ D + ++ Y G+SV
Sbjct: 1428 DLKKLHVGDMISGRIRRVEPFGLFIDIDQTG-MVGLCHISQLSDDRMENVQARYKAGESV 1486
Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
R+ IL ++ E RI+L +K S + D Q L E+ +M
Sbjct: 1487 RAKILKLDEEKKRISLGMKSSYLMNGDDDKAQP--LSEDNTSM 1527
Score = 79 (32.9 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 1381 IVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
++ G ++ V G FI + + + +S LSD +E+ + + G+ V ++L ++
Sbjct: 1437 MISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEE 1496
Query: 1440 SKRVEVTLKTS------DSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1492
KR+ + +K+S D + SE N + D + V+ +G T T+
Sbjct: 1497 KKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDPKSEVLAAVDDFGFQETSGGTS 1556
Query: 1493 LV 1494
LV
Sbjct: 1557 LV 1558
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 830 (297.2 bits), Expect = 9.3e-94, Sum P(3) = 9.3e-94
Identities = 258/934 (27%), Positives = 429/934 (45%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++L+++ GM++ G V EVNE +LV+ NE A E+ L
Sbjct: 75 LSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLE 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD E GK+ + E ++ GM+LT
Sbjct: 135 DLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FL E N G K G L VV + V
Sbjct: 193 TVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS + VS + + +++ L+PG++V +VQ + + G+ L+FLT+FTG VD H
Sbjct: 253 VSLSVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L+ P Y+ + V A IL V P +R V L+L P LH P + + ++G +
Sbjct: 313 LE---PKK--MGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + + AY +S +++ + + +K GS R RI+ +
Sbjct: 368 LDDASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S + D+K G +VKGKV+A+ FG +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + P KKF G E+ RVL ++K++ +T KKTLV SKL ++ Y +A L
Sbjct: 485 LADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG I +++ +GC V+FYN VQG P+ EL +P +++ GQVVK +++ P+
Sbjct: 545 THGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKE 604
Query: 649 RINLSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIP------- 700
R+ LSF ++ + ++ G +P
Sbjct: 605 RMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIPAFL 664
Query: 701 -TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 757
T HL+DH+ + ++ ++ G ++L L ++LL K +L+++ + Q P S
Sbjct: 665 PTPHLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKHILLCRKPALVSTVEGGQDPKSLS 724
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
I P ++ G+V +I + G FV+F L+G +P++ D S+ + GQ+V + +
Sbjct: 725 EIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784
Query: 818 DVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFI 873
+V+ R+ LSL+ S CS S SF+ LEE + + S L + +
Sbjct: 785 NVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMT 844
Query: 874 IGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
G V++ V E + G VV D+ + + AG +E G + +L V +
Sbjct: 845 PGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVDALKL 904
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R +A HQ IV+ ++E++ V SL E
Sbjct: 905 EVHVSLHQDLVNR--KARKLRKNSR-------------HQ---GIVQHLEESFAVASLVE 946
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
H + ++ +S N T F ++ GQ V T+
Sbjct: 947 TGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
Score = 130 (50.8 bits), Expect = 9.3e-94, Sum P(3) = 9.3e-94
Identities = 61/232 (26%), Positives = 104/232 (44%)
Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG--VGGLVVQIGPH- 1284
K+L+ + FQ G + K + D + F+ ++G K+ G G V+++ P+
Sbjct: 1193 KVLKHPDKKFQIGQAIKATVVGPDIPRAFLCLS-LIGPY--KLEEGDVAMGRVLKVLPNK 1249
Query: 1285 -LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
L F + + V Y E +PL+ + + V+C +L + + + LS
Sbjct: 1250 GLTVSFPFGRIGKVSVFHLSDSYSE---EPLTDFCPQKIVRCYILSTAHRM-----LALS 1301
Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
LRSS TN + + ++ P + IED+ +++GYVK++ I L +
Sbjct: 1302 LRSS-----RTNK-ETKSKIEDP--EVNSIEDIQAGQLLRGYVKSILPSSVVIGLGPSVM 1353
Query: 1404 AKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
V S++S E K P GKLV RVL V P +E++L SD+
Sbjct: 1354 GLVKHSHVSQCVSREKELYDKCLPEGKLVTARVLCVNPKKNLIELSLLPSDT 1405
Score = 112 (44.5 bits), Expect = 9.3e-94, Sum P(3) = 9.3e-94
Identities = 49/193 (25%), Positives = 87/193 (45%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+G V I +K + GF G IH++ + DD V + K G+ VTAR+I
Sbjct: 1040 IGDKVTGTIKSVKATHAVVTLDDGFIGCIHVSRILDDVPEGVSPT-TTLKAGKKVTARVI 1098
Query: 1123 A----KSNK--PDMKKSF---LWELSIKPSMLT----VSEIGSKLLFEEC-DVSIGQRVT 1168
K++K P F + ELS++PS L S E+ GQ VT
Sbjct: 1099 GGRDVKTSKFLPISHPRFVLTILELSVRPSELKGDYRALNTHSVSPMEKIRQYQAGQTVT 1158
Query: 1169 GYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
++ Y V +W + I ++ ++ +L ++ L+ ++F IG+A+ V+ +
Sbjct: 1159 CFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVVGPDIP 1218
Query: 1227 KKLLRL-VLRPFQ 1238
+ L L ++ P++
Sbjct: 1219 RAFLCLSLIGPYK 1231
Score = 112 (44.5 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 29/115 (25%), Positives = 57/115 (49%)
Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
T H L L S + L + V+ G+ + + ++ P M++ G+VK++ G F+
Sbjct: 688 TLHRVLCLSQSEKHILLCRKPALVSTVEG-GQDPKSLSEIQPGMLLIGFVKSIKDYGVFV 746
Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
L + +SD +V +P + F G+ V +V +V+ +R+ ++L+ SD
Sbjct: 747 QFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 801
Score = 97 (39.2 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 44/222 (19%), Positives = 96/222 (43%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G++V+ ++ +KP + +K G G + + D +++N F G V R++
Sbjct: 453 GTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADI---MMKNPEKKFNTGDEVKCRVLL 509
Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
P+ KK + ++K +++T S++ + +E D G + G + +V + L+
Sbjct: 510 CD--PEAKKLIM---TLKKTLVT-SKLPAITCYE--DAKPGLQTHGVIIRVKDYGCLVKF 561
Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
++ + + + +R F+ G+ V VL+ K+ + L + G
Sbjct: 562 YNDVQG--LVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK-LLSGSEP 618
Query: 1244 KTVDISNDNMQ-TFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
K + N + + ++ G +V ++ + GL V I PH
Sbjct: 619 KDESVKNSKKKGSTVNTGQLVDVKVLEKTKN--GLEVAILPH 658
Score = 85 (35.0 bits), Expect = 5.0e-89, Sum P(3) = 5.0e-89
Identities = 29/104 (27%), Positives = 49/104 (47%)
Query: 1381 IVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE-- 1437
+ G V K + +KG + KV + +LSD Y E P +F K+V +LS
Sbjct: 1237 VAMGRVLKVLPNKGLTVSFPFGRIGKVSVFHLSDSYSEEPLTDFCPQKIVRCYILSTAHR 1296
Query: 1438 --PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479
LS R T K + S+ E+N++ ++ G ++ G +K +
Sbjct: 1297 MLALSLRSSRTNKETKSKI-EDPEVNSIEDIQAGQLLRGYVKSI 1339
Score = 81 (33.6 bits), Expect = 8.7e-82, Sum P(3) = 8.7e-82
Identities = 42/186 (22%), Positives = 80/186 (43%)
Query: 1064 GSLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
G + + ++ P + L + F G G++ + ++D S E ++F + V I+
Sbjct: 1235 GDVAMGRVLKVLPNKGLTVSFPFGRIGKVSVFHLSDSYS---EEPLTDFCPQKIVRCYIL 1291
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEW 1178
+ +++ + LS++ S T E SK+ E D+ GQ + GYV +
Sbjct: 1292 STAHR-------MLALSLRSSR-TNKETKSKIEDPEVNSIEDIQAGQLLRGYVKSILPSS 1343
Query: 1179 ALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
++ + + + + S +E + + GK VT VL +N +K L+ L L P
Sbjct: 1344 VVIGLGPSVMGLVKHSHVSQCVSREKELYDKCLPEGKLVTARVLCVNPKKNLIELSLLPS 1403
Query: 1238 QDGISD 1243
G D
Sbjct: 1404 DTGKPD 1409
Score = 70 (29.7 bits), Expect = 9.4e-81, Sum P(2) = 9.4e-81
Identities = 55/239 (23%), Positives = 97/239 (40%)
Query: 1216 VTGHVLSIN-KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI------HE---GDIVGG 1265
VTG +L++ K +R+ + + + DK + + + H GD V G
Sbjct: 987 VTGLILAVEGPASKRIRMPAQRDSETVDDKGEEEEEEEEEDLTVRSKKSHSLAIGDKVTG 1046
Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
I + + VV + G +H VS L EG P + G+ V
Sbjct: 1047 TIKSVKATHA--VVTLDDGFIGCIH--------VSRILDDVPEG-VSPTTTLKAGKKVTA 1095
Query: 1326 KVLEISRTVRGTFHVELSL-RSSLDGMS-STNSSDLSTDVDTPGKH----LEKIEDLSPN 1379
+V+ R V+ + + +S R L + S S+L D H +EKI
Sbjct: 1096 RVIG-GRDVKTSKFLPISHPRFVLTILELSVRPSELKGDYRALNTHSVSPMEKIRQYQAG 1154
Query: 1380 MIVQGYVK--NVTSKGCFIMLSRKLDAKV--LLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
V ++K NV K + + + ++ LL++LS ++ P+K+F IG+ + V+
Sbjct: 1155 QTVTCFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVV 1213
Score = 56 (24.8 bits), Expect = 2.8e-79, Sum P(2) = 2.8e-79
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 1429 VAGRVLSVE-PLSKRVEVTLKTSDSRTAS-------QSEINNLS-------NLHVGDIVI 1473
V G +L+VE P SKR+ + + DS T + E +L+ +L +GD V
Sbjct: 987 VTGLILAVEGPASKRIRMPAQR-DSETVDDKGEEEEEEEEEDLTVRSKKSHSLAIGDKVT 1045
Query: 1474 GQIKRVESYGLFITIEN 1490
G IK V++ +T+++
Sbjct: 1046 GTIKSVKATHAVVTLDD 1062
Score = 55 (24.4 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 42/222 (18%), Positives = 85/222 (38%)
Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLL--EEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
TG++ +C S + + L E K +++SK GS + G +++
Sbjct: 588 TGQVVKVAVLNCEPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVN------TGQLVDV 641
Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
KV E G+ V+ H+ + F+ L+ V +G ++ + R++ LS
Sbjct: 642 KVLEKTKNGLEVAILPHN-IPAFLPTPHLSDH-VANGPLLHHWLQTGDTLHRVLCLSQSE 699
Query: 941 VFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
I R+ ++ + V+ +K+ + + P +
Sbjct: 700 KHILLCRKPALVSTVEGGQDPKSLS-EIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPK 758
Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
++ P + F+ GQ+V+A V + S R+LL L+
Sbjct: 759 TIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQ--RMLLSLR 798
Score = 47 (21.6 bits), Expect = 6.3e-87, Sum P(3) = 6.3e-87
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 972 QTVNAIVEI--VKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVM 1026
QTV ++ V + +L + + P+ I S + K P K+F GQ++ ATV+
Sbjct: 1155 QTVTCFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVV 1213
Score = 47 (21.6 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
+ N+ D+++E G + Q + T L EK +S K E+ +E
Sbjct: 29 QDNLFDISTEEGSVKRKKSQKGPAKTKK-------LKIEKRKSNKSMKEK-FEILSLESL 80
Query: 873 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 912
G I G V E N+ +VVS + + GF+ ++ A
Sbjct: 81 CEGMRILGCVKEVNELELVVSLP--NGLQGFVQVTEICDA 118
Score = 39 (18.8 bits), Expect = 4.3e-86, Sum P(3) = 4.3e-86
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTI 1183
++IG +VTG + V A++T+
Sbjct: 1038 LAIGDKVTGTIKSVKATHAVVTL 1060
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 954 (340.9 bits), Expect = 7.6e-93, P = 7.6e-93
Identities = 371/1390 (26%), Positives = 614/1390 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
+ ++++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 75 LNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD K K+ + ET++ GM+LT
Sbjct: 135 DLVGLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + +R V
Sbjct: 193 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD H
Sbjct: 253 VTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L T + N ++V A +L V P +RAV L+L P L P + + ++G +
Sbjct: 313 LDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + T AY + ++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L
Sbjct: 485 LADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+
Sbjct: 545 THGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPT 701
R+ LSF + P + E + G +PT
Sbjct: 605 RMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPT 664
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S I
Sbjct: 665 AHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEI 724
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 725 HPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNV 784
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C+ D S + LEE+ + + S L + + G
Sbjct: 785 DEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 844
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
++ +V E + G V+ F E V G + + + AG +E G +A IL+V +
Sbjct: 845 MALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKL 902
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R DL AIV+ ++E++ V SL E
Sbjct: 903 EVHVSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVE 944
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXX 1047
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 945 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQ 1003
Query: 1048 XXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1004 TRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHA 1063
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
+ + DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1064 SHILDDVP-VGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1119
Query: 1154 L--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
L E+ ++ + K+ T++ LK + + E +F+ R
Sbjct: 1120 PSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKSIMV-KKWLEVEIAPDFRGRIP 1178
Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFI-------HE---G 1260
+ +T LS K+L+ + FQ G + K TV ++ + F+ H+ G
Sbjct: 1179 L--LLTS--LSF----KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHKLKKG 1230
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
++ GR+ K+ + GL V P +GRV + + VSD Y E L +
Sbjct: 1231 EVAMGRVVKV-TPKEGLTVSF-P--FGRVGRVSMFH--VSD---SYSETH---LEDFVPQ 1278
Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1380
Q V+C VL + V + LSLRSS TN S D P + IEDL
Sbjct: 1279 QVVRCYVLSAATPV-----LTLSLRSS-----RTNPETKSKITD-P--EINSIEDLEEGQ 1325
Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLSVE 1437
+++G+VK+V G + L + ++S + +P ++ P GKL+ +VL +
Sbjct: 1326 LLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLN 1385
Query: 1438 PLSKRVEVTL 1447
VE++L
Sbjct: 1386 HQESLVELSL 1395
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 944 (337.4 bits), Expect = 1.1e-91, P = 1.1e-91
Identities = 370/1390 (26%), Positives = 614/1390 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
+ ++++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 75 LNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD K K+ + ET++ GM+LT
Sbjct: 135 DLVGLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + +R V
Sbjct: 193 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD H
Sbjct: 253 VTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L T + N ++V A +L V P +RAV L+L P L P + + ++G +
Sbjct: 313 LDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + T AY + ++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L
Sbjct: 485 LADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+
Sbjct: 545 THGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPT 701
R+ LSF + P + E + G +PT
Sbjct: 605 RMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFLPT 664
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S I
Sbjct: 665 AHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEI 724
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 725 HPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNV 784
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C+ D S + LEE+ + + S L + + G
Sbjct: 785 DEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 844
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
++ +V E + G V+ F E V G + + + AG +E G +A IL+V +
Sbjct: 845 MALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKL 902
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R DL AIV+ ++E++ V SL E
Sbjct: 903 EVHVSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVE 944
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXX 1047
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 945 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQ 1003
Query: 1048 XXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1004 TRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHA 1063
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
+ + DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1064 SHILDDVP-VGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1119
Query: 1154 L--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
L E+ ++ + K+ T++ LK + ++ E + + R
Sbjct: 1120 PSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLK-KYNMVKKWLEVEIAPDIRGRIP 1178
Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFI-------HE---G 1260
+ +T LS K+L+ + FQ G + K TV ++ + F+ H+ G
Sbjct: 1179 L--LLTS--LSF----KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHKLKKG 1230
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
++ GR+ K+ + GL V P +GRV + + VSD Y E L +
Sbjct: 1231 EVAMGRVVKV-TPKEGLTVSF-P--FGRVGRVSMFH--VSD---SYSETH---LEDFVPQ 1278
Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1380
Q V+C VL + V + LSLRSS TN S D P + IEDL
Sbjct: 1279 QVVRCYVLSAATPV-----LTLSLRSS-----RTNPETKSKITD-P--EINSIEDLEEGQ 1325
Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLSVE 1437
+++G+VK+V G + L + ++S + +P ++ P GKL+ +VL +
Sbjct: 1326 LLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLN 1385
Query: 1438 PLSKRVEVTL 1447
VE++L
Sbjct: 1386 HQESLVELSL 1395
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 928 (331.7 bits), Expect = 6.8e-90, P = 6.8e-90
Identities = 364/1399 (26%), Positives = 621/1399 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++++++ GM++ G V EV+E +LVI + NE A E+ L
Sbjct: 72 LSVESLREGMRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQLNEQVAQEEPLK 131
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
L +F G LV C+V + E GK+ + E ++ GM+LT
Sbjct: 132 DLVCLSELFSPGMLVRCVVSSVGIT--ESGKKSVKLSLNPKNVNEVLSAEALKPGMLLTG 189
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + V
Sbjct: 190 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGV 249
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS P VS + + + +++ L+PG++V +VQ + G+ L+FLT+F+G VD H
Sbjct: 250 VGLSIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLTFFSGLVDFMH 309
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDI 410
L T + N + V A +L V P +RAV L+L P L + + +G +
Sbjct: 310 LDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQHLGAV 364
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + AY +S +++ + + YK G+ + RI+ +
Sbjct: 365 LDDVPVQSFFSKAGATFRLKDGAL---AYARLSHLSDSKNIFNAEAYKPGNIHKCRIIDY 421
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ + L+ S E F + D+KPG +VKG V+ ++ +G +V+ ++ L P H
Sbjct: 422 SQMDEMVLLSLRPSIIESQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPMH 481
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ +G E+ RVL ++K++ +T KKTL++SKL ++ YA+A L
Sbjct: 482 LADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQ 541
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+
Sbjct: 542 THGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSKE 601
Query: 649 RINLSFMM--KPTRV-----SEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPT 701
R+ LSF + P + + + +PT
Sbjct: 602 RMLLSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIPAFLPT 661
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + + I
Sbjct: 662 PHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFAEI 721
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V +I + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 722 HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNV 781
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C D S + LEE+ + + S L + + G
Sbjct: 782 DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 841
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
V++ +V E + G VV F E V G + + + AG VE G + IL+V +
Sbjct: 842 MVLDLEVQEVLEDGSVV-FSE-GPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKL 899
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R + HQ AIV+ ++E++ V SL E
Sbjct: 900 EVHVSLCHDLVNRKPKKLKKGSE---------------HQ---AIVQHLEESFAVASLVE 941
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXX 1051
H ++ S N T +F ++ GQ V T+ T G LL +
Sbjct: 942 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGMT-GFLLAVEGPAAKRTVRQ 1000
Query: 1052 XXXXXXXXXYD------------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1001 TRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHA 1060
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG-- 1151
+ + DD V + + K+G+TVTAR+I DMK +S + T+ E+
Sbjct: 1061 SHILDDVP-VGTSPTAKLKVGRTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1116
Query: 1152 -SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
S+L + C ++ + ++ K+ A T+ LK + ++ E + + R
Sbjct: 1117 PSELEKDGC-TALNTHSSSHLEKIKQYQAGQTLICFLK-KYNVVKKWLEVEIAPDIRGRI 1174
Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-------HE---G 1260
+ +T LS K+L+ + F+ G + K + D+ + F+ H+ G
Sbjct: 1175 PL--LLTS--LSF----KVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSLIGPHKLEKG 1226
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
++ GR+ K+ + GL V P +G++ + + VSD Y E PL +
Sbjct: 1227 EVAMGRVVKV-TPKEGLTVSF-P--FGKIGKVSVFH--VSD---SYSE---TPLEDFVPQ 1274
Query: 1321 QFVKCKVLEISRTVRGTFHV-ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
+ V+C VL T HV LSLRSS TN S D P + I+D+
Sbjct: 1275 KIVRCYVLS------ATGHVLTLSLRSS-----RTNPETKSKITD-P--EINSIQDIQEG 1320
Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRV 1433
+++GYVK+V G L + V ++S Y SP K+ P GKL+ +V
Sbjct: 1321 QLLRGYVKSVQPHGVLFGLGPSVVGLVQYPHVSQ-Y--SPSKKTLYNRYLPEGKLLTAKV 1377
Query: 1434 LSVEPLSKRVEVTLKTSDS 1452
LS++ VE++ +D+
Sbjct: 1378 LSLKCQKNLVELSFLPNDT 1396
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 834 (298.6 bits), Expect = 1.6e-89, Sum P(3) = 1.6e-89
Identities = 275/1008 (27%), Positives = 453/1008 (44%)
Query: 54 FPRGGGHSLTQRERDEIHA-EVDAEFE-AVERGLHXXXXXXXXXTERKANETVDDLGSLF 111
FPRGG L + E+ E D F+ + E G + K + ++ S+
Sbjct: 8 FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLK-IEKRKSI- 65
Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
I K ++L+++ GM++ G V EV+E +LV+
Sbjct: 66 -KSIKEKF----EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V LD E GK+ +
Sbjct: 121 QKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
+ ++ GM+LT V S+EDHGY++ G+ FL E N G K G
Sbjct: 179 LSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L VV + VV LS + VS + + +++ L+PG++V +VQ + + G+ L
Sbjct: 239 LTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
+FLT+F G VD HL+ P Y+ ++ V A IL V P +R V L+L P LH
Sbjct: 299 NFLTFFKGLVDFMHLE---PKK--MGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + D + + AY +S +++ + +
Sbjct: 354 RPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEA 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K GS + RI+ + ++ LA L+ S + D+K G VVKG V+A+ FG +V
Sbjct: 411 FKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
+ +K L P H+++ + P KK+ G E+ RVL ++K++ +T KKTLV SKL
Sbjct: 471 KVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++++ Y A L THG I +++ +GC V+FYN VQG P+ EL +P ++++ GQ
Sbjct: 531 SLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQ 590
Query: 635 VVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKG 693
VVK ++S P+ R+ LSF ++ +R + G
Sbjct: 591 VVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTG 650
Query: 694 Y--------SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
+ +PT HL+DH + ++ ++ G ++L L ++LL K +L
Sbjct: 651 LEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPAL 710
Query: 746 INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
+++ + Q P S I P ++ G+V I E G FV+F L+G +P++ D S
Sbjct: 711 VSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPS 770
Query: 804 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSK 860
+ + GQ+V + + +V+ R+ LSL+ S CS S SF+ LEE +
Sbjct: 771 EHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMS 830
Query: 861 HNGSEL-KWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGS 918
+ S L + + G V++ VHE D VV S + D+ + + AG VE G
Sbjct: 831 NQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQ 890
Query: 919 VIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 978
+ +L V + V +SL ++R HQ IV
Sbjct: 891 KKKVVVLHVDMLKLEVHVSLHQDLVNRKTRKLRKSSR---------------HQ---GIV 932
Query: 979 EIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
+ ++E++ V SL E H + ++ +S N T F ++ GQ V T+
Sbjct: 933 QHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
Score = 128 (50.1 bits), Expect = 2.5e-87, Sum P(2) = 2.5e-87
Identities = 63/250 (25%), Positives = 109/250 (43%)
Query: 1212 IGKAVTGHV--LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
IG + G + L + K+L+ + FQ G + + + D + F+ I R+ +
Sbjct: 1181 IGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYRLEE 1240
Query: 1270 ILSGVGGLVVQIGPH--LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1327
+G V+++ P+ L F ++ + + Y E PL + + V+C +
Sbjct: 1241 GEVAMGR-VMKVVPNRGLTVSFPFGKIGKVSMFHLSDSYSEA---PLEDFCPQKIVRCYI 1296
Query: 1328 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1387
L + V + LSLRSS + N ++ P + IED+ +++GYVK
Sbjct: 1297 LSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVK 1343
Query: 1388 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF-----PIGKLVAGRVLSVEPLSKR 1442
V I L + S++S+ PEKE P GKLV +VL V P+
Sbjct: 1344 CVLPSSVIIGLGPSVLGLAKYSHVSE--CVPPEKELYNGCLPEGKLVTAKVLRVNPMKNL 1401
Query: 1443 VEVTLKTSDS 1452
+E++L SD+
Sbjct: 1402 IELSLLPSDT 1411
Score = 112 (44.5 bits), Expect = 1.6e-89, Sum P(3) = 1.6e-89
Identities = 49/193 (25%), Positives = 91/193 (47%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+G V I +K + + GF G IH + + DD V + + K G+ VTAR+I
Sbjct: 1046 IGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDDVP-VGTSPTTTLKAGKKVTARVI 1104
Query: 1123 A----KSNK--PDMKKSF---LWELSIKPSML--TVSEIG--SKLLFEEC-DVSIGQRVT 1168
K++K P F + ELS++PS L + S + S+ E+ GQ VT
Sbjct: 1105 GGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVT 1164
Query: 1169 GYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
+ Y V +W + I ++ ++ +L ++ L+ ++F +G+A+ V+ +
Sbjct: 1165 CFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVP 1224
Query: 1227 KKLLRL-VLRPFQ 1238
+ L L ++ P++
Sbjct: 1225 RAFLCLSLIGPYR 1237
Score = 85 (35.0 bits), Expect = 1.6e-89, Sum P(3) = 1.6e-89
Identities = 32/109 (29%), Positives = 53/109 (48%)
Query: 1376 LSPNMIVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
L + G V K V ++G + KV + +LSD Y E+P ++F K+V +L
Sbjct: 1238 LEEGEVAMGRVMKVVPNRGLTVSFPFGKIGKVSMFHLSDSYSEAPLEDFCPQKIVRCYIL 1297
Query: 1435 S----VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479
S V LS R T + + +R EIN++ ++ G ++ G +K V
Sbjct: 1298 STAHRVLALSLRSSRTNRETKNRI-EDPEINSIEDVKEGQLLRGYVKCV 1345
Score = 69 (29.3 bits), Expect = 8.5e-81, Sum P(3) = 8.5e-81
Identities = 45/186 (24%), Positives = 75/186 (40%)
Query: 1064 GSLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
G + + ++ P L + F G G++ + ++D S F KI V I+
Sbjct: 1241 GEVAMGRVMKVVPNRGLTVSFPFGKIGKVSMFHLSDSYSEAPLEDFCPQKI---VRCYIL 1297
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEW 1178
+ +++ + LS++ S T E +++ E DV GQ + GYV V
Sbjct: 1298 STAHR-------VLALSLRSSR-TNRETKNRIEDPEINSIEDVKEGQLLRGYVKCVLPSS 1349
Query: 1179 ALLTISRH-LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
++ + L + S P E + + GK VT VL +N K L+ L L P
Sbjct: 1350 VIIGLGPSVLGLAKYSHVSECVPPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPS 1409
Query: 1238 QDGISD 1243
G D
Sbjct: 1410 DTGRPD 1415
Score = 56 (24.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 51/253 (20%), Positives = 94/253 (37%)
Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
C D S M E LL + +++ + ++K IG+V++G V FG++V
Sbjct: 419 CRIIDYSQMDELALLSLRKSIIAAPFLRYHDIK------IGTVVKGTVLAIKPFGILVKV 472
Query: 895 EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXX 954
E + G + LA +++ + +V L D K + + ++
Sbjct: 473 GEQ--IKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMT-LKKTLVTSK 529
Query: 955 XXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
L QT I+ VK+ ++ YN G + +TQ P +
Sbjct: 530 LSLITCYEGAKPGL---QTHGVIIR-VKDYGCIVKF--YNDVQGLVPKHELSTQHIPDPE 583
Query: 1015 --FLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEIT 1072
F GQ V V++ S R+LL + + G++ ++
Sbjct: 584 TVFYTGQVVKVAVLSCEPSKE--RMLLSFRLLSDSRPKDPGVESSQKK--TGAVRIGQLV 639
Query: 1073 EIKPLELRLKFGI 1085
++K LE + K G+
Sbjct: 640 DVKVLE-KTKTGL 651
Score = 53 (23.7 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 978 VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
V+ +KE + + P + ++ P + F+ GQ+V+A V + S R+
Sbjct: 736 VKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQ--RM 793
Query: 1038 LLLLK 1042
LL L+
Sbjct: 794 LLSLR 798
Score = 45 (20.9 bits), Expect = 1.8e-82, Sum P(3) = 1.8e-82
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1005 YNTQKFPQKQFLNGQSVIATVM 1026
+ K P K+F GQ++ ATV+
Sbjct: 1198 FKVLKHPDKKFQVGQAIEATVV 1219
Score = 43 (20.2 bits), Expect = 2.3e-78, Sum P(2) = 2.3e-78
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 1465 NLHVGDIVIGQIKRVESYGLFITI 1488
+L +GD V G IK V++ + +T+
Sbjct: 1043 SLAIGDKVTGTIKAVKATHVVVTL 1066
Score = 38 (18.4 bits), Expect = 9.7e-82, Sum P(3) = 9.7e-82
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 1277 LVVQIGPHLYGRVHF--TELKNICVSDPLSGYDEGQ 1310
L V IGP + GR+ T L + P + GQ
Sbjct: 1177 LEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQ 1212
Score = 38 (18.4 bits), Expect = 7.7e-78, Sum P(2) = 7.7e-78
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
+G + A R+L P+ TLK TA
Sbjct: 1071 VGCIHASRILDDVPVGTSPTTTLKAGKKVTA 1101
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 923 (330.0 bits), Expect = 2.4e-89, P = 2.4e-89
Identities = 352/1386 (25%), Positives = 606/1386 (43%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++++++ GM++ G V EVNE +LVI NE E L
Sbjct: 75 LSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLK 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V L + GK+ + E ++ GM+LT
Sbjct: 135 DLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L +V + V
Sbjct: 193 TVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L+FLT+FTG VD H
Sbjct: 253 VSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDI 410
L T + N + V A IL V P +R V L+L P L P + + +G +
Sbjct: 313 LDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + AY +S +++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D++PG VVKG V+ + S+G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + P KK+ +G E+ RVL ++K++ +T KKTL++SKL +++ YA+A L
Sbjct: 485 LADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+
Sbjct: 545 THGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--------KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS-KGTI 699
R+ LSF + +P S+ ++ + +
Sbjct: 605 RMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFL 664
Query: 700 PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 757
PT HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + S
Sbjct: 665 PTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFS 724
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
IHP ++ G+V +I + G F++F L+G AP++ D S + GQ+V + +
Sbjct: 725 EIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVT 784
Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGF 872
+V+ E R+ LSL+ S C D + + LL + + LQ S + ++ +
Sbjct: 785 NVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEM 843
Query: 873 IIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
G ++ V E D VV S D+ + + AG VESG + IL+V +
Sbjct: 844 TPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLK 903
Query: 932 RLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLP 991
V +SL ++R +A HQ AIV+ +++++ + SL
Sbjct: 904 LEVHVSLHQDLVNR--KARKLRKGSE-------------HQ---AIVQHLEKSFAIASLV 945
Query: 992 EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXX 1046
E H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 946 ETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT-GLLLAVEGPAAKRTMR 1004
Query: 1047 XXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
D +G +V + IKP + + G G IH
Sbjct: 1005 PTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIH 1064
Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
+ + DD + K+G+TVTAR+I DMK +S + T+ E+
Sbjct: 1065 ASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMKTFKYLPISHPRFVRTIPELSV 1120
Query: 1153 KLL-FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
+ E+ ++ + K+ A T++ LK + ++ E + + R
Sbjct: 1121 RPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLK-KYNVVKKWLEVEIAPDIRGRIP 1179
Query: 1212 IG-KAVTGHVLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISK 1269
+ +++ VL +K + LR G S KT+ + + EG++ GR+ K
Sbjct: 1180 LLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHKLEEGEVAMGRVVK 1239
Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
+ G L V P +G++ + ++ SD Y E PL + + V+C +L
Sbjct: 1240 VTPNEG-LTVSF-P--FGKIGTVSIFHM--SD---SYSE---TPLEDFVPQKVVRCYILS 1287
Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
+ V + LSLRSS TN + + V+ P + I+D+ +++GYV ++
Sbjct: 1288 TADNV-----LTLSLRSS-----RTNP-ETKSKVEDP--EINSIQDIKEGQLLRGYVGSI 1334
Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
G F L + S++S K P GKL+ RVL + VE++
Sbjct: 1335 QPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELS 1394
Query: 1447 LKTSDS 1452
D+
Sbjct: 1395 FLPGDT 1400
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 901 (322.2 bits), Expect = 6.8e-87, P = 6.8e-87
Identities = 374/1472 (25%), Positives = 639/1472 (43%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGD 113
FPRGG + + E+ + V+ + L +K+ + + L D
Sbjct: 8 FPRGGTRKIRKSEKT-LQQSVEQD------NLFDISTEEESTKRKKSQKEPATIKKLKTD 60
Query: 114 GI-SGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
S K R +I +++ GM++ G V EVNE +LVI
Sbjct: 61 KRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V L K GK+ +
Sbjct: 121 KKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
E ++ GM+LT V S+EDHGY++ G+ FLP E N +K G
Sbjct: 179 LNPEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L +++ + + VV LS VS + + + +++ L+PG++V +VQ + G+ L
Sbjct: 239 LNCIIQEVKGSGGVVSLSIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
FL++FTG VD HL T + N + V A +L V P +R V L+L P L
Sbjct: 299 KFLSFFTGLVDFMHLDPKKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + + + T AY + ++ + +
Sbjct: 354 RPLTGLSCQQLGAVLEDVPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPET 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K G+ + RI+ + ++ + L+ S E + D+KPG +VKGKV+ + +G +V
Sbjct: 411 FKPGNIHKCRIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
++ L P H+++ + P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL
Sbjct: 471 NMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P S Q
Sbjct: 531 PAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQ 590
Query: 635 VVKCRIMSSIPASRRINLSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX---- 688
VVK +++ P+ ++ LSF + P + SE
Sbjct: 591 VVKVVVLNCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLE 650
Query: 689 -XIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL-DNESSNLLLSAKYSLI 746
+ + +PT HL+DH+ ++ ++ ++ G ++L L + E N LL K +L+
Sbjct: 651 VAVLPHNIRAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEERNELLCRKPALV 710
Query: 747 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
++ + Q P S IHP ++ G+V +I + G F++F L+G AP++ D S
Sbjct: 711 SAVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSD 770
Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKH 861
+ GQ+V + + +V+ E R+ LSL+ S C+ D S + LEE+ + +
Sbjct: 771 HFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSN 830
Query: 862 NGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESG 917
S L + + G V++ +V E + G V+ F E V G + + + AG VESG
Sbjct: 831 RDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESG 888
Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAI 977
+ IL+V + V +SL+ ++R + G +Q A+
Sbjct: 889 QKKKVVILNVDMLKLEVHVSLRRDLVNRRTKKLRKG---------------GEYQ---AV 930
Query: 978 VEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
V+ ++E + V SL E H ++ S N T +F ++ GQ V T+ T G
Sbjct: 931 VQHLEETFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GL 989
Query: 1037 LLLL----LKAIXXXXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLE 1078
LL + K D +G +V + IKP
Sbjct: 990 LLAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTH 1049
Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
+ + G G IH + + DD V + + K+G+ VTAR+I DMK +
Sbjct: 1050 VVVTLEDGIVGCIHASHILDDVP-VGTSPTTKLKVGKKVTARVIGGR---DMKTFKFLPI 1105
Query: 1139 SIKPSMLTVSEIGSKL--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
S + T+ E+ + L E+ ++ + K+ A T++ LK + ++
Sbjct: 1106 SHPRFIRTIPELSVRPSELKEDGHTALNTHSVSPLEKIKQYKAGQTVTCFLK-KYNVVKK 1164
Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
E + + R + L ++ K+L+ + FQ G + K + D+ + F
Sbjct: 1165 WLEVEIAPDIRGRIPL--------LLMSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAF 1216
Query: 1257 I-------HE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
+ H+ G++ GR+ K+ + GL+V P +G++ + + VSD S
Sbjct: 1217 LCLSLIGPHKMEKGEVAMGRVVKV-TPKEGLMVSF-P--FGKIGKVNIFH--VSDSFSE- 1269
Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
PL ++ + +C VL + V + LSLRSS TN S VD P
Sbjct: 1270 -----TPLETFNLKKIERCYVLSNAGPV-----LTLSLRSS-----RTNPDTKSKIVD-P 1313
Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------E 1420
+ +D+ +++GYVK++ G + L + S++S SP +
Sbjct: 1314 --EINSTQDIEEGQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHVSQ---HSPTRNALYD 1368
Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
K P GKL+ +VLS+ VE++ D+
Sbjct: 1369 KYLPEGKLLTAKVLSLNRRENLVELSFLPGDT 1400
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 901 (322.2 bits), Expect = 7.0e-87, P = 7.0e-87
Identities = 372/1471 (25%), Positives = 637/1471 (43%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGD 113
FPRGG + + E+ + V+ + L +K+ + + L D
Sbjct: 8 FPRGGTRKIRKSEKT-LQQSVEQD------NLFDISTEEESTKRKKSQKEPATIKKLKTD 60
Query: 114 GI-SGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
S K R +I +++ GM++ G V EVNE +LVI
Sbjct: 61 KRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V L K GK+ +
Sbjct: 121 KKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
E ++ GM+LT V S+EDHGY++ G+ FLP E N +K G
Sbjct: 179 LNPEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L +++ + + VV LS VS + + + +++ L+PG++V +VQ + G+ L
Sbjct: 239 LNCIIQEVKGSGGVVSLSIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
FL++FTG VD HL T + N + V A +L V P +R V L+L P L
Sbjct: 299 KFLSFFTGLVDFMHLDPKKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + + + T AY + ++ + +
Sbjct: 354 RPLTGLSCQQLGAVLEDVPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPET 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K G+ + RI+ + ++ + L+ S E + D+KPG +VKGKV+ + +G +V
Sbjct: 411 FKPGNIHKCRIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
++ L P H+++ + P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL
Sbjct: 471 NMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P S Q
Sbjct: 531 PAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQ 590
Query: 635 VVKCRIMSSIPASRRINLSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX---- 688
VVK +++ P+ ++ LSF + P + SE
Sbjct: 591 VVKVVVLNCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLE 650
Query: 689 -XIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
+ + +PT HL+DH+ ++ ++ ++ G ++L L +LL K +L++
Sbjct: 651 VAVLPHNIRAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEGRVLLCRKPALVS 710
Query: 748 SAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
+ + Q P S IHP ++ G+V +I + G F++F L+G AP++ D S
Sbjct: 711 AVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDH 770
Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHN 862
+ GQ+V + + +V+ E R+ LSL+ S C+ D S + LEE+ + +
Sbjct: 771 FVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSNR 830
Query: 863 GSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGS 918
S L + + G V++ +V E + G V+ F E V G + + + AG VESG
Sbjct: 831 DSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESGQ 888
Query: 919 VIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 978
+ IL+V + V +SL+ ++R + G +Q A+V
Sbjct: 889 KKKVVILNVDMLKLEVHVSLRRDLVNRRTKKLRKG---------------GEYQ---AVV 930
Query: 979 EIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
+ ++E + V SL E H ++ S N T +F ++ GQ V T+ T G L
Sbjct: 931 QHLEETFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GLL 989
Query: 1038 LLL----LKAIXXXXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLEL 1079
L + K D +G +V + IKP +
Sbjct: 990 LAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTHV 1049
Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139
+ G G IH + + DD V + + K+G+ VTAR+I DMK +S
Sbjct: 1050 VVTLEDGIVGCIHASHILDDVP-VGTSPTTKLKVGKKVTARVIGGR---DMKTFKFLPIS 1105
Query: 1140 IKPSMLTVSEIGSKL--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
+ T+ E+ + L E+ ++ + K+ A T++ LK + ++
Sbjct: 1106 HPRFIRTIPELSVRPSELKEDGHTALNTHSVSPLEKIKQYKAGQTVTCFLK-KYNVVKKW 1164
Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
E + + R + L ++ K+L+ + FQ G + K + D+ + F+
Sbjct: 1165 LEVEIAPDIRGRIPL--------LLMSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAFL 1216
Query: 1258 -------HE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
H+ G++ GR+ K+ + GL+V P +G++ + + VSD S
Sbjct: 1217 CLSLIGPHKMEKGEVAMGRVVKV-TPKEGLMVSF-P--FGKIGKVNIFH--VSDSFSE-- 1268
Query: 1308 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1367
PL ++ + +C VL + V + LSLRSS TN S VD P
Sbjct: 1269 ----TPLETFNLKKIERCYVLSNAGPV-----LTLSLRSS-----RTNPDTKSKIVD-P- 1312
Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EK 1421
+ +D+ +++GYVK++ G + L + S++S SP +K
Sbjct: 1313 -EINSTQDIEEGQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHVSQ---HSPTRNALYDK 1368
Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
P GKL+ +VLS+ VE++ D+
Sbjct: 1369 YLPEGKLLTAKVLSLNRRENLVELSFLPGDT 1399
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 752 (269.8 bits), Expect = 7.2e-87, Sum P(3) = 7.2e-87
Identities = 210/747 (28%), Positives = 352/747 (47%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXX---XXXXXXXXXILDNEI---EANE 179
+T+K + GM G + EV +LVI +L ++ E E
Sbjct: 81 LTIKELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYSELLSKQVTQGELLE 140
Query: 180 D-NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
D N L ++ G LV C+V ++ K G+R I + GM+L+
Sbjct: 141 DLNSLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKSVNKGLSASALTSGMLLSG 198
Query: 239 YVKSIEDHGYILHFGLPSFTGFLP----RNNL-AENSGIDVKPGLLLQGVVRSIDRTRKV 293
+V S+EDHGY++ G+ FLP +N + A G D+K G L V+ + +V
Sbjct: 199 FVSSVEDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNEGRV 258
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS+D V+ + + + ++ L+PG++V +VQ + GV L+FL+ FTG VD H
Sbjct: 259 VRLSADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMH 318
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
+ +TN Y+ ++ V A IL PTS+ V LTL LH P+ + ++G +
Sbjct: 319 VDPE-KSTN----YSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSPNQLSNDRIGAV 373
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
++S + + A+ +++ +K G + RI+ +
Sbjct: 374 VEESTVKAFYKQFGAVFQLDDGML---AFARPKHLSKTRKSFKPAAFKAGCKHKCRIIDY 430
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ + LK E + D+ G V++GKV+++ G V+ G+K L P H
Sbjct: 431 SLMDEMCIVSLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMH 490
Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + +P KK+ VG E+ RVL K++ +T KKTLV+SKL +LSSY +A LI
Sbjct: 491 LADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLI 550
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG++ + GC V+FYN V+G P++EL +P P ++H GQVVK ++ P
Sbjct: 551 THGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQE 610
Query: 649 RINLSFMMKPTRVSEDXXX----------XXXXXXXXXXXXXXXXXXXXXXIAK--GYSK 696
R+ LSF + V E I + G
Sbjct: 611 RLLLSFRLSSRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLKKNENGLEVSILEDGGNVI 670
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPS 754
+PT HL+D + ++ ++ ++ G +++ L ++ ++L K ++I++ Q Q+
Sbjct: 671 AWLPTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVR 730
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
S I P ++ GYV ++ G FV F +TG AP+ D D + VGQ+V +
Sbjct: 731 SFSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIA 790
Query: 815 NILDVNSETGRITLSLKQSCCSSTDAS 841
++ ++ E R+ LSLK S CSS D++
Sbjct: 791 KVMSIDEEKQRVLLSLKVSECSSGDSA 817
Score = 159 (61.0 bits), Expect = 7.2e-87, Sum P(3) = 7.2e-87
Identities = 49/147 (33%), Positives = 75/147 (51%)
Query: 1313 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1372
PLS + G+ V+C +L G ++LSLR S ++ NS + DV+ +
Sbjct: 1272 PLSDFKIGKVVRCYILS---NENGK--IQLSLRQSR--LNPRNSRKVE-DVE-----ITC 1318
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLV 1429
I+D+ +V+GYVK+VT G F LS L ++L N+S +V+ EK P GKL+
Sbjct: 1319 IKDVKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLL 1378
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
+VL V VE++L D+ S
Sbjct: 1379 TAKVLDVNKKENHVELSLLPEDTEMPS 1405
Score = 136 (52.9 bits), Expect = 4.3e-79, Sum P(2) = 4.3e-79
Identities = 48/163 (29%), Positives = 80/163 (49%)
Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV-KNVTSKGCFIM 1397
H E + ++ +S+T + +T+ + L I+ L P I G V K + G I
Sbjct: 1193 HPEKNFKNG-QALSATVTGTDATETNL-FLSLTGIQSLEPGTITVGMVAKMIPHIGLTIT 1250
Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-----DS 1452
L KV + +LSD Y ESP +F IGK+V +LS E + +++++L+ S +S
Sbjct: 1251 LPGGKAGKVSIFHLSDKYTESPLSDFKIGKVVRCYILSNE--NGKIQLSLRQSRLNPRNS 1308
Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVR 1495
R EI + ++ G +V G +K V G+F + + L R
Sbjct: 1309 RKVEDVEITCIKDVKKGQLVRGYVKSVTPSGVFFGLSASLLGR 1351
Score = 108 (43.1 bits), Expect = 1.0e-06, Sum P(5) = 1.0e-06
Identities = 28/118 (23%), Positives = 60/118 (50%)
Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
+ ++ P +++ GYV+ V G F+ + ++SD +V + F +G+ V
Sbjct: 729 VRSFSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTV 788
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTA-SQSEINNLSNLHVGDI--VIGQIKRVESYGL 1484
+V+S++ +RV ++LK S+ + S +E +L N + ++ + ++R E GL
Sbjct: 789 IAKVMSIDEEKQRVLLSLKVSECSSGDSAAESFSLLNQYFKEVEEIRNLLRRREESGL 846
Score = 104 (41.7 bits), Expect = 2.5e-06, Sum P(5) = 2.5e-06
Identities = 33/125 (26%), Positives = 56/125 (44%)
Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
L ED P +I G+V GC + + V + LS + P+K F G++V
Sbjct: 539 LSSYEDAEPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVV 598
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQ--SEI----NNLSNLHVGDIVIGQIKRVESYG 1483
VL EP +R+ ++ + S SRT + SE +G++V ++ + G
Sbjct: 599 KVMVLKCEPQQERLLLSFRLS-SRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLKKNENG 657
Query: 1484 LFITI 1488
L ++I
Sbjct: 658 LEVSI 662
Score = 102 (41.0 bits), Expect = 1.1e-74, Sum P(3) = 1.1e-74
Identities = 46/179 (25%), Positives = 79/179 (44%)
Query: 1064 GSLVQAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
G++ + ++ P + L + G G++ I ++D E+ S+FKIG+ V I+
Sbjct: 1231 GTITVGMVAKMIPHIGLTITLPGGKAGKVSIFHLSD---KYTESPLSDFKIGKVVRCYIL 1287
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE--C--DVSIGQRVTGYVYKVDNEW 1178
+ N +LS++ S L K+ E C DV GQ V GYV V
Sbjct: 1288 SNENGKI-------QLSLRQSRLNPRN-SRKVEDVEITCIKDVKKGQLVRGYVKSVTPSG 1339
Query: 1179 ALLTISRHLKAQLFILD-SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
+S L ++ + S Y + +++ GK +T VL +NK++ + L L P
Sbjct: 1340 VFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLDVNKKENHVELSLLP 1398
Score = 101 (40.6 bits), Expect = 7.2e-87, Sum P(3) = 7.2e-87
Identities = 74/363 (20%), Positives = 141/363 (38%)
Query: 976 AIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTA 1034
AIV+ + E + ++SL + S +N T +F ++ GQ + AT + + ++
Sbjct: 941 AIVQHIAEEFAIVSLLDSGRLAAIPIASHFNDTFRFDSEKLKVGQRIYAT-LKMVKANDL 999
Query: 1035 GRLLLLL-----------KAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKF 1083
G LL + + +G +V + +KP + +
Sbjct: 1000 GVLLAVQDPAKKNAFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAI 1059
Query: 1084 GIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARIIAKSN----------KPDMK 1131
G IH + + D+ V + F + K GQ VTAR+I + P
Sbjct: 1060 DDKLTGSIHASRILDE---VPIHSFPTYTLKAGQKVTARVIGGRDVNTHRYLPITHPHFT 1116
Query: 1132 KSFLWELSIKPSMLT--VSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWALLTISRHL 1187
+S + ELSI+PS + V + + + GQ VT +V K + W + ++ +
Sbjct: 1117 RS-VPELSIRPSEIEGEVETMRDDTREKLGPYNTGQTVTCFVRKYNTLKNWLEVEVTPDV 1175
Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
+ ++ L + L+ ++ F G+A++ V + + L L L Q
Sbjct: 1176 RGRVPRLLLSLNTKVLKHPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS-------- 1227
Query: 1248 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
+ G I G ++K++ +G L + + G+V L + PLS +
Sbjct: 1228 ---------LEPGTITVGMVAKMIPHIG-LTITLPGGKAGKVSIFHLSDKYTESPLSDFK 1277
Query: 1308 EGQ 1310
G+
Sbjct: 1278 IGK 1280
Score = 99 (39.9 bits), Expect = 0.00049, Sum P(4) = 0.00049
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
+ ED+ ++QG V ++ G + ++ + V +L+D ++ PEK++ +G V
Sbjct: 452 RYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRC 511
Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH---VGDIVIGQIKRVESYGLFITI 1488
RVL P K++ +TLK +T QS++ LS+ G I G + +G +
Sbjct: 512 RVLECNPAEKKLFLTLK----KTLVQSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKF 567
Query: 1489 EN 1490
N
Sbjct: 568 YN 569
Score = 88 (36.0 bits), Expect = 2.6e-72, Sum P(4) = 2.6e-72
Identities = 45/181 (24%), Positives = 79/181 (43%)
Query: 759 IHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
+ P ++ G V +I G + G G D + +G+ VR IL
Sbjct: 1228 LEPGTITVGMVAKMIPHIGLTITLPGGKAGKVSIFHLSDKYTESPLSDFKIGKVVRCYIL 1287
Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
++E G+I LSL+QS + ++ +++ +E I ++ K +V+ V
Sbjct: 1288 --SNENGKIQLSLRQSRLNPRNSRKVED---VE--ITCIKDVKKGQLVRGYVKSVTPSGV 1340
Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
G ++ G ++ F+ S Y F+ H L + G ++ A +LDV K E V+LS
Sbjct: 1341 FFGL--SASLLGRIL-FQNVSP-Y-FVQKHSLYEKYLPEGKLLTAKVLDVNKKENHVELS 1395
Query: 938 L 938
L
Sbjct: 1396 L 1396
Score = 78 (32.5 bits), Expect = 4.9e-10, Sum P(4) = 4.9e-10
Identities = 32/129 (24%), Positives = 61/129 (47%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G +V+A++ ++ PL + L F F G + V+ +KS +N+ Q V A I++
Sbjct: 287 GLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMHVDPEKS-------TNYSPNQMVKACILS 339
Query: 1124 -----KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
K + ++++FL P+ L+ IG+ + EE V + G V+++D+
Sbjct: 340 THPTSKVVRLTLRQAFLHPGG-SPNQLSNDRIGA--VVEESTVKAFYKQFGAVFQLDDGM 396
Query: 1179 ALLTISRHL 1187
+HL
Sbjct: 397 LAFARPKHL 405
Score = 77 (32.2 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 83/348 (23%), Positives = 140/348 (40%)
Query: 715 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNI 772
K+VI PG + L++ +D +S + +S + L+ A+Q + S HP V H I
Sbjct: 894 KNVI-PGEKAKGLVLHVDAITSKVYVSLREELLKKRAKQRLTKNSQ-HPAIVQH-----I 946
Query: 773 IETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
E V L GRL S D R D S+ VGQ + + + V + + L++
Sbjct: 947 AEEFAIVSLLDSGRLAAIPIASHFNDTFRFD-SEKLKVGQRIYATLKMVKANDLGVLLAV 1005
Query: 831 KQSCCSSTDASFMQE-HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
+ + +E LEE +A + KH+ S V G + SV V + D
Sbjct: 1006 QDPAKKNAFVRDRKESETALEETLAA--AVKHSLSLGDIVTG-TVKSVKPTHVTVAIDDK 1062
Query: 890 VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSLK--TVFID 944
+ S S + + H T+++G + A ++ DV R + ++ T +
Sbjct: 1063 LTGSIHA-SRILDEVPIHSFPTYTLKAGQKVTARVIGGRDV-NTHRYLPITHPHFTRSVP 1120
Query: 945 RFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKE-----NYLVLSL-PEYNHSIG 998
LG + T + V++ N+L + + P+ +
Sbjct: 1121 ELSIRPSEIEGEVETMRDDTREKLGPYNTGQTVTCFVRKYNTLKNWLEVEVTPDVRGRVP 1180
Query: 999 YASVSDYNTQ--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI 1044
+S NT+ K P+K F NGQ++ ATV ++ T L L L I
Sbjct: 1181 RLLLS-LNTKVLKHPEKNFKNGQALSATVTGTDATET--NLFLSLTGI 1225
Score = 73 (30.8 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 45/219 (20%), Positives = 92/219 (42%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G ++Q ++ +KP+ +++K G G + + D +++ + +G V R++
Sbjct: 459 GDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADV---ILKQPEKKYNVGDEVRCRVL- 514
Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
+ N P KK FL ++K +++ S++ +E D G G+V ++
Sbjct: 515 ECN-PAEKKLFL---TLKKTLVQ-SKLPVLSSYE--DAEPGLITHGFVVCAREFGCIVKF 567
Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
+K + + + EP + + FH G+ V VL +++ L L R + +
Sbjct: 568 YNDVKGLVPKNELSSEPISCPD--KVFHDGQVVKVMVLKCEPQQERLLLSFRLSSRTVPE 625
Query: 1244 -KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
++ I Q G++V + K GL V I
Sbjct: 626 GRSECIPKKKQQVKYQIGEMVDVEVLK--KNENGLEVSI 662
Score = 63 (27.2 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
IH GD++ G++ L +G + V++ + G V L ++ + P Y+ G
Sbjct: 456 IHTGDVMQGKVLS-LKPIG-MQVKVTDGIKGLVPSMHLADVILKQPEKKYNVG------- 506
Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348
DE V+C+VLE + + F L+L+ +L
Sbjct: 507 -DE---VRCRVLECNPAEKKLF---LTLKKTL 531
Score = 58 (25.5 bits), Expect = 2.7e-13, Sum P(5) = 2.7e-13
Identities = 31/140 (22%), Positives = 61/140 (43%)
Query: 708 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 767
LE + + PG ++ +S++ S K S+ + AS + ++ G
Sbjct: 139 LEDLNSLSDLYSPGMLVRCVVTSVEKSADGRRSIKLSINPKSVNKGLSASALTSGMLLSG 198
Query: 768 YVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGR 825
+V ++ + G + + F P KA + +A +GQS+ I +V +E GR
Sbjct: 199 FVSSVEDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNE-GR 257
Query: 826 IT-LSLKQSCCSSTDASFMQ 844
+ LS +S +++ A+ Q
Sbjct: 258 VVRLSADRSEVAASIATEQQ 277
Score = 56 (24.8 bits), Expect = 1.2e-70, Sum P(2) = 1.2e-70
Identities = 51/238 (21%), Positives = 96/238 (40%)
Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
GDIV G + + + V I L G +H + + + P+ + P
Sbjct: 1040 GDIVTGTVKSVKPT--HVTVAIDDKLTGSIHASRILD---EVPIHSF------PTYTLKA 1088
Query: 1320 GQFVKCKVLEISRTVRGTFHVELS---LRSSLDGMSSTNSSDLSTDVDTPGKHL-EKIED 1375
GQ V +V+ R V ++ ++ S+ +S S++ +V+T EK+
Sbjct: 1089 GQKVTARVIG-GRDVNTHRYLPITHPHFTRSVPELS-IRPSEIEGEVETMRDDTREKLGP 1146
Query: 1376 LSPNMIVQGYVK--NVTSKGCFIMLSRKLDAKV--LLSNLSDGYVESPEKEFPIGKLVAG 1431
+ V +V+ N + ++ + +V LL +L+ ++ PEK F G+ ++
Sbjct: 1147 YNTGQTVTCFVRKYNTLKNWLEVEVTPDVRGRVPRLLLSLNTKVLKHPEKNFKNGQALSA 1206
Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI-KRVESYGLFITI 1488
V + + ++L T QS L G I +G + K + GL IT+
Sbjct: 1207 TVTGTDATETNLFLSL------TGIQS-------LEPGTITVGMVAKMIPHIGLTITL 1251
Score = 55 (24.4 bits), Expect = 2.7e-13, Sum P(5) = 2.7e-13
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 845 EHFLLEEKIAMLQSSKHNGSELKWV--EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 902
++ L++E + S KH E +++ E G V++GKV G+ V + + G
Sbjct: 429 DYSLMDEMCIV--SLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPIGMQVKVTD--GIKG 484
Query: 903 FITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFI 943
+ LA ++ G ++ +L+ AE+ + L+LK +
Sbjct: 485 LVPSMHLADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLV 532
Score = 55 (24.4 bits), Expect = 7.8e-09, Sum P(5) = 7.8e-09
Identities = 57/268 (21%), Positives = 105/268 (39%)
Query: 993 YNHSIGYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AIXX 1046
YN G ++ +++ P K F +GQ + VM L RLLL + +
Sbjct: 568 YNDVKGLVPKNELSSEPISCPDKVFHDGQ--VVKVMVLKCEPQQERLLLSFRLSSRTVPE 625
Query: 1047 XXXXXXXXXXXXXXYDVGSLVQAEITEIKP--LELR-LKFGIGFHGRIHITEVNDDKSNV 1103
Y +G +V E+ + LE+ L+ G + ++D +N
Sbjct: 626 GRSECIPKKKQQVKYQIGEMVDVEVLKKNENGLEVSILEDGGNVIAWLPTVHLSDFVANS 685
Query: 1104 VENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
+ L+ + G V R++ S+K D + L S S + ++ F E +
Sbjct: 686 -KLLWHCLQEGD-VLPRVMCLSDKGD--RIILCRKSAVISAVQEEQVVRS--FSE--IQP 737
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF----QRRFHIGKAVTGH 1219
G + GYV KV + ++ + A + S +F + F +G+ V
Sbjct: 738 GVLLIGYVRKV------MPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAK 791
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVD 1247
V+SI++EK+ + L L+ + D +
Sbjct: 792 VMSIDEEKQRVLLSLKVSECSSGDSAAE 819
Score = 54 (24.1 bits), Expect = 1.9e-70, Sum P(2) = 1.9e-70
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL--SNLHVGDIVIGQIKRVESYGLFITI 1488
G +L+V+ +K+ +S TA + + +L +GDIV G +K V+ + + I
Sbjct: 1000 GVLLAVQDPAKKNAFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAI 1059
Query: 1489 EN 1490
++
Sbjct: 1060 DD 1061
Score = 53 (23.7 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 25/87 (28%), Positives = 37/87 (42%)
Query: 319 LVPGMMVSTRVQSILENGVML---SFLTYFTGTVDIFHL--QNTFPTTNWKNDYNQHKKV 373
LVPG + VQ ++E+G L + T T +HL +N P +K
Sbjct: 853 LVPGKELQLVVQDVMEDGSALFSGGCVRGLTVTATRYHLGGKNVIPG----------EKA 902
Query: 374 NARILFVDPTSRAVGLTLNPYLLHNRA 400
+L VD + V ++L LL RA
Sbjct: 903 KGLVLHVDAITSKVYVSLREELLKKRA 929
Score = 52 (23.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 28/121 (23%), Positives = 51/121 (42%)
Query: 233 GMVLTAYVKSIEDHGYILHFG--LPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT 290
G L V+ + + G L G + T R +L G +V PG +G+V +D
Sbjct: 856 GKELQLVVQDVMEDGSALFSGGCVRGLTVTATRYHLG---GKNVIPGEKAKGLVLHVDAI 912
Query: 291 RKVVYLSSDPDTVSKCVTKDL-KGISIDLLVPGMMVSTRVQSILENGVM--LSFLTYFTG 347
VY+S + + K + L K +V + + S+L++G + + ++F
Sbjct: 913 TSKVYVSLREELLKKRAKQRLTKNSQHPAIVQHIAEEFAIVSLLDSGRLAAIPIASHFND 972
Query: 348 T 348
T
Sbjct: 973 T 973
Score = 52 (23.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 38/154 (24%), Positives = 61/154 (39%)
Query: 233 GMVLTAYVKSIEDHGYILHFGL-PSFTGFLPRNNLAENSGI------DVKPGLLLQGVVR 285
G +T +V+ L + P G +PR L+ N+ + + K G L V
Sbjct: 1150 GQTVTCFVRKYNTLKNWLEVEVTPDVRGRVPRLLLSLNTKVLKHPEKNFKNGQALSATVT 1209
Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFLTY 344
D T ++LS L GI L PG + V ++ + G+ ++
Sbjct: 1210 GTDATETNLFLS-------------LTGIQS--LEPGTITVGMVAKMIPHIGLTITLPGG 1254
Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
G V IFHL + + T + +D+ K V IL
Sbjct: 1255 KAGKVSIFHLSDKY-TESPLSDFKIGKVVRCYIL 1287
Score = 50 (22.7 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 28/120 (23%), Positives = 52/120 (43%)
Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVD-NEWALLTIS-RHLKAQLFILDSAY-EPSELQ 1204
SE+ + + E+ + ++ + G V K + A L +S L + I+D + +P
Sbjct: 266 SEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMHVDP---- 321
Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDI 1262
E + + V +LS + K++RL LR G S +SND + + E +
Sbjct: 322 EKSTNYSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSPN--QLSNDRIGAVVEESTV 379
Score = 49 (22.3 bits), Expect = 2.7e-13, Sum P(5) = 2.7e-13
Identities = 20/101 (19%), Positives = 42/101 (41%)
Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
TG + +++ DV Q RS RK +D +K + ++ ++I
Sbjct: 25 TGKKAKPKFEQDNLFDVHHEEQTQKRKRSEGDHRKQKKFKADIKAPAKDIAISIEPLTIK 84
Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
L GM+ ++ + +++S TG V + H+ + +
Sbjct: 85 ELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAY 125
Score = 47 (21.6 bits), Expect = 1.0e-69, Sum P(2) = 1.0e-69
Identities = 23/86 (26%), Positives = 35/86 (40%)
Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
K DL + VQ K K F+ D K + L + + + +G +V G
Sbjct: 995 KANDLGVLLAVQDPAK----KNAFVR-----DRKESETALEETLAAAVKHSLSLGDIVTG 1045
Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQ 1457
V SV+P V + K + S AS+
Sbjct: 1046 TVKSVKPTHVTVAIDDKLTGSIHASR 1071
Score = 47 (21.6 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 25/110 (22%), Positives = 40/110 (36%)
Query: 967 DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
DL + Q++N ++E VK V+ L + AS++ Q + L G V A V
Sbjct: 238 DLKIGQSLNCVIEEVKNEGRVVRLSADRSEVA-ASIAT-EQQNWTLSNLLPGLVVKAQVQ 295
Query: 1027 ALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKP 1076
+ + G L L + Y +V+A I P
Sbjct: 296 KV---APLGVSLTFLSSFTGIVDFMHVDPEKSTNYSPNQMVKACILSTHP 342
Score = 44 (20.5 bits), Expect = 1.0e-67, Sum P(4) = 1.0e-67
Identities = 34/158 (21%), Positives = 59/158 (37%)
Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTG--FAPRSKAVDGQRADLSKTYYV-GQSVRSN 815
+ +V GYV ++ +G F L G Q+ L + Y G+ + +
Sbjct: 1322 VKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAK 1381
Query: 816 ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE----EKIAMLQSSKHNGSELKWV-E 870
+LDVN + + LSL + S + E L E+ + +K E+K +
Sbjct: 1382 VLDVNKKENHVELSLLPE--DTEMPSVLPESLGLPRCGAEEEKREEDNKEKKEEVKMKRK 1439
Query: 871 GFIIGSVIEGKVH---------ESNDFGVVVSFEEHSD 899
+ S E + + ND G+ V + E D
Sbjct: 1440 QRRVNSESEQETKPKKRKFSPADENDSGIEVYYREEED 1477
Score = 42 (19.8 bits), Expect = 1.1e-74, Sum P(3) = 1.1e-74
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
+SS NSS L + HL+ E + + +K + CF KL+ V L N
Sbjct: 1583 LSSPNSSILW--LQYMAFHLQATEIEKARAVAERALKTI----CFREEQEKLNVWVALLN 1636
Query: 1411 LSDGY 1415
L + Y
Sbjct: 1637 LENMY 1641
Score = 42 (19.8 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 539 PGKKFKVGAELVFRVLG---VKSKR-ITVTHKK-TLVKSKLAILSSYAEATDRLITHGWI 593
P K G ++ RV+G V + R + +TH T +L+I S E +
Sbjct: 1082 PTYTLKAGQKVTARVIGGRDVNTHRYLPITHPHFTRSVPELSIRPSEIEGEVETMRDDTR 1141
Query: 594 TKIEKHG------CFVRFYNGVQGF 612
K+ + CFVR YN ++ +
Sbjct: 1142 EKLGPYNTGQTVTCFVRKYNTLKNW 1166
Score = 41 (19.5 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1061 YDVGSLVQAEITEIKPLELRL 1081
Y+VG V+ + E P E +L
Sbjct: 503 YNVGDEVRCRVLECNPAEKKL 523
Score = 38 (18.4 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 1160 DVSIGQRVTGYVYKVDNEWALLTIS 1184
D+ IGQ + + +V NE ++ +S
Sbjct: 238 DLKIGQSLNCVIEEVKNEGRVVRLS 262
Score = 37 (18.1 bits), Expect = 2.6e-72, Sum P(4) = 2.6e-72
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
+L+ E SE +E + K T + K+KK
Sbjct: 1519 VLNQKEESSESEEEEENLQSKKKQTKKEKELEKQKK 1554
Score = 37 (18.1 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFI--THHQLAGATVESGSVIQAAILD 926
G + G + E F +V+S + + GF+ TH A + + S V Q +L+
Sbjct: 89 GMLFLGCIKEVTVFELVISLP--NGLTGFVPVTHISDAYSELLSKQVTQGELLE 140
Score = 37 (18.1 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1138 LSIKPSMLTVSEIGSKLLFEEC 1159
+SI+P LT+ E+ +LF C
Sbjct: 76 ISIEP--LTIKELCEGMLFLGC 95
>ZFIN|ZDB-GENE-030131-4076 [details] [associations]
symbol:pdcd11 "programmed cell death 11"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 ZFIN:ZDB-GENE-030131-4076 GO:GO:0003723 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HOGENOM:HOG000088607 HOVERGEN:HBG108419 OMA:LHLADIY
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 EMBL:CR812943
IPI:IPI00817258 UniGene:Dr.76104 Ensembl:ENSDART00000074342
Ensembl:ENSDART00000124833 Uniprot:B8JIP9
Length = 1816
Score = 662 (238.1 bits), Expect = 6.0e-74, Sum P(3) = 6.0e-74
Identities = 216/914 (23%), Positives = 422/914 (46%)
Query: 54 FPRGGGHSLTQRER--DEIHAEVDAEFEAVERGLHXXXXXXXXXTERKAN-ETVDDLGSL 110
FPRGG T+R++ D I EVD F+ + + K+ + VD+
Sbjct: 8 FPRGG----TERKKPTDLIPHEVDNLFDTPAKAVKKKKKAVKQDEAPKSKKQKVDE---- 59
Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXX---XXXXXX 167
+ I + L++++ G + G V EV++ ++V+
Sbjct: 60 --ENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAY 117
Query: 168 XXILDNEIEANE--DNLLPT--IFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXX 223
IL+++++ ++ + ++P +F +G L+ C+V LD K+ G +
Sbjct: 118 TNILNDKLDTDDGLEEVVPLSKLFTLGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNK 175
Query: 224 XXXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
++ M L+ V+S+EDHGY++ G+ FLP+ + + + V +L+ +
Sbjct: 176 ALNSVALKPAMTLSGCVESVEDHGYLVDIGIGGTKAFLPKKSTSSKQDLYVGQYVLV--L 233
Query: 284 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
+ + + +VV LS +P + K + +G ++D L+PG+++ V+ + +G++++FL+
Sbjct: 234 IEDVKDSGRVVRLSQNPQALVKACAQTKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLS 293
Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAP 401
FTG VD HL +T Y++ +++ ARIL+V P++R VGL+L +LL
Sbjct: 294 SFTGVVDFLHLDEDKEST-----YSKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVL 348
Query: 402 PSHV--KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
H +VG++ + + + A+V ++ +E +L+ +
Sbjct: 349 DLHFSERVGEVVQGCQMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDTNHLM 404
Query: 460 GSCVRV-RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
+ RI+ + +E + L+ S+ E F+ D+K G +V+G V + G V+
Sbjct: 405 SQTQHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGVYVRI 464
Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAI 576
++ + P H+++ + P KKF G ++ RVL V++++ + +T KK LV+S L I
Sbjct: 465 GEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLLVEAQKKLLILTRKKALVESTLPI 524
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
SY++A I+HG++ I++ GC VRFY V+G P EL + P ++ VGQVV
Sbjct: 525 FQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVV 584
Query: 637 KCRIMSSIPASRRINLSFM-MKPTRVSEDXXXXXXXXXXXXXXXXX---XXXXXXXXIAK 692
K +++ + + LSF + V E+ I
Sbjct: 585 KVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIP 644
Query: 693 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQ 751
+ +PT HL+DH+ + + ++ G L+ L N + ++L+ K L +
Sbjct: 645 EEVQAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIED 704
Query: 752 --LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
+P + S + + G+V NI+ G F+ F + G AP + D + S + +
Sbjct: 705 GAIPKNFSELQVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSGIFDID 764
Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL-LEEKIAMLQSSKHNG-SELK 867
Q+V + + +++ E R +SLK S S ++ F L+E+ + + G S++
Sbjct: 765 QTVVAKVTNLDEEKQRFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRGDSDVL 824
Query: 868 W-VEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 925
W + +G ++ V ++ + G V+++ ++ S V + + G + G + A IL
Sbjct: 825 WKLSALTVGDQMKMIVGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKLNAVIL 884
Query: 926 DVAKAERLVDLSLK 939
+ + V +SL+
Sbjct: 885 HIDFVKSQVHVSLR 898
Score = 157 (60.3 bits), Expect = 6.0e-74, Sum P(3) = 6.0e-74
Identities = 45/143 (31%), Positives = 76/143 (53%)
Query: 1313 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1372
PL Y EGQ ++C V+E + ++ F+V SLR S + + D+ V+ P ++
Sbjct: 1225 PLESYKEGQIIRCHVIE--QKIK-EFNV--SLRPS---RLNKDKHDI---VEDP--EIQS 1271
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLV 1429
I D+ ++GYV +V +G F+ LSR + +VL N + Y+ P+ K LV
Sbjct: 1272 IADIKEGQSIRGYVSSVNDQGIFLRLSRTITGRVLFQNATKYYMNDPKVLIKHVGQNALV 1331
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDS 1452
A +VLSV+ + V ++L + D+
Sbjct: 1332 AAKVLSVDSENLHVNLSLLSKDT 1354
Score = 98 (39.6 bits), Expect = 2.0e-64, Sum P(3) = 2.0e-64
Identities = 30/122 (24%), Positives = 55/122 (45%)
Query: 1376 LSPNMIVQGYVKNVTS-KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
L P M V+ + KG + L + L++LSD Y E P + + G+++ V
Sbjct: 1181 LEPGMNTLAMVQKIQPHKGLMLALPYENTGLAHLTDLSDSYTEKPLESYKEGQIIRCHV- 1239
Query: 1435 SVEPLSKRVEVTLKTS----DSRTASQS-EINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
+E K V+L+ S D + EI +++++ G + G + V G+F+ +
Sbjct: 1240 -IEQKIKEFNVSLRPSRLNKDKHDIVEDPEIQSIADIKEGQSIRGYVSSVNDQGIFLRLS 1298
Query: 1490 NT 1491
T
Sbjct: 1299 RT 1300
Score = 95 (38.5 bits), Expect = 4.2e-64, Sum P(3) = 4.2e-64
Identities = 43/182 (23%), Positives = 82/182 (45%)
Query: 1069 AEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
A + +I+P + L L G H+T+++D + E ++K GQ + +I + K
Sbjct: 1189 AMVQKIQPHKGLMLALPYENTGLAHLTDLSD---SYTEKPLESYKEGQIIRCHVIEQKIK 1245
Query: 1128 PDMKKSFLWELSIKPSMLTVSE---IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
+ +S++PS L + + + D+ GQ + GYV V+++ L +S
Sbjct: 1246 E-------FNVSLRPSRLNKDKHDIVEDPEIQSIADIKEGQSIRGYVSSVNDQGIFLRLS 1298
Query: 1185 RHLKAQ-LFILDSAYEPSELQEFQRRFHIGK--AVTGHVLSINKEKKLLRLVLRPFQDGI 1241
R + + LF + Y ++ + + H+G+ V VLS++ E + L L G
Sbjct: 1299 RTITGRVLFQNATKYYMNDPKVLIK--HVGQNALVAAKVLSVDSENLHVNLSLLSKDTGK 1356
Query: 1242 SD 1243
D
Sbjct: 1357 PD 1358
Score = 79 (32.9 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 40/159 (25%), Positives = 68/159 (42%)
Query: 1156 FEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
F C D+ +GQ V G V + + I H++ + + A L+ +++F+ G
Sbjct: 436 FFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLA--DVTLKNPEKKFYPGL 493
Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK---IL 1271
V VL + +KKLL L + + + T+ I Q++ D GRIS +
Sbjct: 494 KVKCRVLLVEAQKKLLILTRKK---ALVESTLPI----FQSY---SDARPGRISHGFVVC 543
Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
G +V+ + G V EL V++P + GQ
Sbjct: 544 IKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQ 582
Score = 76 (31.8 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 48/221 (21%), Positives = 96/221 (43%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHG---RIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
VG +V+ +T+++ + ++ G G RIH+ +V ++N F G V
Sbjct: 444 VGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVT------LKNPEKKFYPGLKVKC 497
Query: 1120 RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
R++ + KK + L+ K +++ E + D G+ G+V +
Sbjct: 498 RVLLVEAQ---KKLLI--LTRKKALV---ESTLPIFQSYSDARPGRISHGFVVCIKEFGC 549
Query: 1180 LLTISRHLKA----QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
++ +K Q ++ P EL F +G+ V VL ++EKK+LRL +
Sbjct: 550 IVRFYEDVKGLVPMQELTTETVTNPEEL------FFVGQVVKVKVLKCDEEKKMLRLSFK 603
Query: 1236 PFQDGISDKTVDISNDNMQTF-IHEGDIVGGRIS-KILSGV 1274
++++ D+ + + F G +V R+ K+L+G+
Sbjct: 604 ----SVTEE--DVREEQIAKFDFIVGKMVDARVCRKVLNGL 638
Score = 75 (31.5 bits), Expect = 6.0e-74, Sum P(3) = 6.0e-74
Identities = 57/270 (21%), Positives = 114/270 (42%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+G L++ + ++K L + + G GR+H++++ + ++ S K+G + AR+I
Sbjct: 997 LGELMKVTVKKLKALCVLVNLPSGNTGRVHVSQILEFP-DIGSCPTSVLKVGMEMEARVI 1055
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV-YKVDNEWALL 1181
+ +FL +S +++ E+ F E + + V YK ++ +
Sbjct: 1056 G--GRAVRAHNFL-AISHPDYNISIPELS----FLESKLKVSDMVNKLEKYKPGDD-IIC 1107
Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
S+++K + +L+ +P + K L ++K + L +P Q +
Sbjct: 1108 FPSKYIKKEQ-LLEVHVKPDIMGAVPLLAMCNK------LGLSKHPQRL---FKPGQ-AL 1156
Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL--VVQIGPHLYGRVHFTELKNICV 1299
S K V + D + + G K+ G+ L V +I PH G + +N +
Sbjct: 1157 SAKVVSV--DPKKPIQFSLSLTGTH--KLEPGMNTLAMVQKIQPHK-GLMLALPYENTGL 1211
Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
+ D PL Y EGQ ++C V+E
Sbjct: 1212 AHLTDLSDSYTEKPLESYKEGQIIRCHVIE 1241
Score = 75 (31.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 39/157 (24%), Positives = 69/157 (43%)
Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP-----GMVVKGKVIAV 509
KK+ GSC+ V++ + E LA G S ++ H KP G ++K V +
Sbjct: 952 KKFSVGSCLDVKV-DDPNCEDLA-GFPLIS-YQSSNAKHEQHKPNEERLGELMKVTVKKL 1008
Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVK--PGKKFKVGAELVFRVLGVKSKR----ITV 563
+ +V P G + + EF + P KVG E+ RV+G ++ R + +
Sbjct: 1009 KALCVLVNLPSGNTGRVHVSQILEFPDIGSCPTSVLKVGMEMEARVIGGRAVRAHNFLAI 1068
Query: 564 THKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKH 599
+H + +L+ L S + +D + K+EK+
Sbjct: 1069 SHPDYNISIPELSFLESKLKVSDM------VNKLEKY 1099
Score = 67 (28.6 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 868 W-VEGFIIGSVIEGKVHESNDFGVVVSF-EEHSDVYGFITHHQLAGATVESGSVIQAAIL 925
W ++ + G +I G V G++V+F + V F+ + +T G I A IL
Sbjct: 264 WTLDNLLPGLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDKESTYSKGQEILARIL 323
Query: 926 DVAKAERLVDLSLKT 940
V + R V LSL++
Sbjct: 324 YVQPSTRQVGLSLRS 338
Score = 66 (28.3 bits), Expect = 1.4e-61, Sum P(3) = 1.4e-61
Identities = 38/162 (23%), Positives = 63/162 (38%)
Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKI 1270
G+ + HV I ++ K + LRP + DK + + +Q+ I EG + G +S +
Sbjct: 1232 GQIIRCHV--IEQKIKEFNVSLRPSRLN-KDKHDIVEDPEIQSIADIKEGQSIRGYVSSV 1288
Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
G+ +++ + GRV F ++DP + + V KVL +
Sbjct: 1289 NDQ--GIFLRLSRTITGRVLFQNATKYYMNDPKV--------LIKHVGQNALVAAKVLSV 1338
Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1372
HV LSL S G L + G+ EK
Sbjct: 1339 DSE---NLHVNLSLLSKDTGKPDLLPESLELPLRLTGEEKEK 1377
Score = 65 (27.9 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 1217 TGHVLSINKEKKLLRLV-LRPFQDGISDKTVDISNDNMQTF----IHEGDIVGGRISKIL 1271
T H++S + + +LR++ P + I T+ S+ F I G IV G ++ +
Sbjct: 400 TNHLMS--QTQHILRIINYSPIEQ-IYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQ 456
Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
G+ V+IG H+ G + L ++ + +P E +F P G VKC+VL
Sbjct: 457 KH--GVYVRIGEHIRGMIPRIHLADVTLKNP-----EKKFYP------GLKVKCRVL 500
Score = 50 (22.7 bits), Expect = 2.2e-59, Sum P(3) = 2.2e-59
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 1414 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
G + P++ F G+ ++ +V+SV+P K ++ +L S T + L G +
Sbjct: 1141 GLSKHPQRLFKPGQALSAKVVSVDP-KKPIQFSL----SLTGTHK-------LEPGMNTL 1188
Query: 1474 GQIKRVESY-GLFITI--ENTNL 1493
+++++ + GL + + ENT L
Sbjct: 1189 AMVQKIQPHKGLMLALPYENTGL 1211
Score = 49 (22.3 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 271 GIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
G+++ PG L V+ ID + V++S P
Sbjct: 870 GVNLTPGCKLNAVILHIDFVKSQVHVSLRP 899
Score = 48 (22.0 bits), Expect = 4.0e-71, Sum P(3) = 4.0e-71
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 973 TVNAIVEIVKENYLVLSLPEYNHSIGYAS-VSDYNTQKFPQKQFLNGQSV 1021
T+ + +I L+L+LP N + + + +SD T+K P + + GQ +
Sbjct: 1187 TLAMVQKIQPHKGLMLALPYENTGLAHLTDLSDSYTEK-PLESYKEGQII 1235
Score = 48 (22.0 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
G L+ + + P L + F F G + +++DK E+ +S GQ + ARI+
Sbjct: 272 GLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDK----ESTYSK---GQEILARIL 323
Score = 43 (20.2 bits), Expect = 1.3e-70, Sum P(3) = 1.3e-70
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 984 NYLVLSLPEYNHSI 997
N+L +S P+YN SI
Sbjct: 1064 NFLAISHPDYNISI 1077
Score = 43 (20.2 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 52/287 (18%), Positives = 114/287 (39%)
Query: 993 YNHSIGYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXX 1050
Y G + + T+ P++ F GQ + V L L L K++
Sbjct: 554 YEDVKGLVPMQELTTETVTNPEELFFVGQ--VVKVKVLKCDEEKKMLRLSFKSVTEEDVR 611
Query: 1051 XXXXXXXXXXYDVGSLVQAEITE--IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
+ VG +V A + + LE+ + + T ++D +N + L+
Sbjct: 612 EEQIAKFD--FIVGKMVDARVCRKVLNGLEVSI-IPEEVQAFLPTTHLSDHVTNCLP-LW 667
Query: 1109 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1168
+ G T+ ++ +N KK + L+ KP + E G+ + ++ +G ++
Sbjct: 668 MALEEGDTI-CNLMCLTNYK--KKGIV--LTKKPHLKAYIEDGA-IPKNFSELQVGMQMV 721
Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
G+V + ++ + I + + ++E F I + V V ++++EK+
Sbjct: 722 GWVKNIMPYGVFISFPYGVFGLAPIANMGDQ--FIKETSGIFDIDQTVVAKVTNLDEEKQ 779
Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
+ L+ +S+ + +S + T + +G IS++ +G G
Sbjct: 780 RFLVSLK-----LSE--LSLSENEFHTRLIQGLKERRNISEMRAGRG 819
Score = 42 (19.8 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 497 KPGMVVKGKVIAVD 510
KPG + KV++VD
Sbjct: 1151 KPGQALSAKVVSVD 1164
Score = 41 (19.5 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 1106
VG+L+ + E+ E+ + G G + I + D +N++ +
Sbjct: 80 VGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNILND 123
Score = 40 (19.1 bits), Expect = 2.8e-70, Sum P(3) = 2.8e-70
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 980 IVKENYLVLSL-PEYNHSIGY-ASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
I KE L + + P+ ++ A + K PQ+ F GQ++ A V+++
Sbjct: 1113 IKKEQLLEVHVKPDIMGAVPLLAMCNKLGLSKHPQRLFKPGQALSAKVVSV 1163
Score = 39 (18.8 bits), Expect = 6.6e-08, Sum P(3) = 6.6e-08
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 1104 VENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
V+NLF + + + P KK + E +IK + T +I D+++
Sbjct: 26 VDNLFDTPAKAVKKKKKAVKQDEAPKSKKQKVDEENIKLNTTTTVQI-----LHLRDLTV 80
Query: 1164 GQRVTGYVYKVDN 1176
G + G V +V +
Sbjct: 81 GTLMLGCVKEVSD 93
Score = 38 (18.4 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 1141 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
K S S+ G ++ F E D ++ + +G V
Sbjct: 1434 KKSKKEDSDSGVEVFFRETDETVSDKKSGKV 1464
>POMBASE|SPCC1183.07 [details] [associations]
symbol:SPCC1183.07 "U3 snoRNP-associated protein Rrp5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0032040 "small-subunit processome" evidence=ISO] [GO:0042134
"rRNA primary transcript binding" evidence=ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 SMART:SM00386
PomBase:SPCC1183.07 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030515 GO:GO:0006397
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006364 GO:GO:0042134 GO:GO:0032040
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 eggNOG:COG0539
KO:K14792 OMA:LHLADIY PIR:T40847 RefSeq:NP_587890.1
ProteinModelPortal:O74835 STRING:O74835 EnsemblFungi:SPCC1183.07.1
GeneID:2538897 KEGG:spo:SPCC1183.07 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 NextBio:20800076 Uniprot:O74835
Length = 1690
Score = 498 (180.4 bits), Expect = 2.6e-43, P = 2.6e-43
Identities = 250/1110 (22%), Positives = 444/1110 (40%)
Query: 172 DNEIEANEDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWXXXXXXXXXXXX 225
DN ED L L ++ VGQ V V L ++ + GKR I
Sbjct: 158 DNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSA 217
Query: 226 -XXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 284
G ++ A V SIEDHG + G+ ++TGFL + ++ N V+ LL V+
Sbjct: 218 PEAADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPFVEGQSLLCSVI 275
Query: 285 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLT 343
DR + +LS ++ TK L+ + S+ ++PG ++ V I E+GV+ ++
Sbjct: 276 SKEDR---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMG 327
Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG-----LTLNPYL 395
T DI+H + + ++ + K V AR+LFV DP AV LT N +
Sbjct: 328 VVDVTSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSFLPHVLTFN-FA 385
Query: 396 LHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVT-ISDVAEEEVRKLE 454
N P + +G I + +K + +S A+++ +SD +
Sbjct: 386 TPNTPHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNS 445
Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
YK S RI+ + +++ L + S D++ G V G + + G
Sbjct: 446 GPYKVDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGI 505
Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKS 572
+V G+ L P HM++ + P ++FKVG+ + RVL V KR+ +T KK+L+ +
Sbjct: 506 VVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNT 565
Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
L ++ Y +AT T G + +I + G V FYN V+ F P SE+ + + V
Sbjct: 566 DLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKV 625
Query: 633 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAK 692
GQ + I+S P +R++ + + +
Sbjct: 626 GQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDL 685
Query: 693 GYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINS 748
G G I L D L + + + ++ + ++LVL ++S L LS K SL+ +
Sbjct: 686 GDKVTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEA 745
Query: 749 AQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
A++ +P + + + G+V N G FV F L P++ + S Y
Sbjct: 746 AKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAYISEEYVPVPSAVY 805
Query: 807 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA-SFMQEHFLLEEKI--AMLQSSKHNG 863
QSV L V + +S K A FM+ + ++ + + ++ +
Sbjct: 806 KPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTYDYVA 865
Query: 864 SELKWVEGFIIGSVIEGKVH---ESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
++ W ++ S +++ +N G V E D +G I G I
Sbjct: 866 GKITWA---VVTSAKASQLNVDLAANVHGRV-DVSEVFDNFGEIVDPNKPLKRFHKGDKI 921
Query: 921 QAAILDV--AKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 978
+ +L + ++ + + +S + V +F E V V
Sbjct: 922 RVRVLGIHDSRNHKFLPISHR-VSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFV 980
Query: 979 EIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
V + + +SL P N I ++ D QK F G+++ V+ S T
Sbjct: 981 NNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKAIKCYVVNAEDSIT--- 1037
Query: 1037 LLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
L AI GS + ++T + L+ GR+ ++
Sbjct: 1038 ----LSAIGPLQGFENLTP--------GSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDM 1085
Query: 1097 NDDKSNVVENLFS-NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1155
DD + E F+ N +G V + + P+ K + S S EI K +
Sbjct: 1086 FDDYDILPETKFTRNNLVGVCVLSVDV-----PNRKVALSARNSRTQSQPV--EIKDKEI 1138
Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
D+ IG G+V V N+ +TI +L A++ I ++ + +++++ FH+ +
Sbjct: 1139 NSVDDLKIGDICRGFVCNVANQGLFVTIGHNLIARVKI-GELFD-TFIKDWKPHFHVNQL 1196
Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKT 1245
V G ++ I+ + K + + L+ Q I D +
Sbjct: 1197 VKGSIVGIDNDSKRIEMSLK--QSKIKDSS 1224
Score = 452 (164.2 bits), Expect = 5.1e-57, Sum P(2) = 5.1e-57
Identities = 186/767 (24%), Positives = 318/767 (41%)
Query: 20 NKASK-NQFKNSKKQINDAVEAQDLALXXXXXXXXFPRGGGHSLTQRERDEIHAEVDAEF 78
NK + N + S Q N+ + + L FPRGG SLT E E A ++A+
Sbjct: 4 NKRKRSNASEGSDSQGNERISS----LSANEATQDFPRGGASSLTPLEYKE--AVLEAKK 57
Query: 79 EAVERGLHXXXXXXXXXTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLW 138
+ +E ++K ++ L + L + + KNI+ G +
Sbjct: 58 DFMESASGTAELSKKTRPKKKGSKK-SSKSELDNEE---NLKVHIQSLRYKNITPGSLIL 113
Query: 139 GVVAEVNEKDLVI----CXXXXXXXXXXXXXXXXXI--LDNEIEAN-----EDNL--LPT 185
G +A++N DL + C + +DN E N ED L +P
Sbjct: 114 GQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEEEDGLNQIPD 173
Query: 186 I---FHVGQLVSCIVLQL-DDDKKEIGKRKIWXXXXXXXXXXXX-XXETVQEGMVLTAYV 240
+ + VGQ V V L ++ + GKR I G ++ A V
Sbjct: 174 LMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAPEAADFVAGSMIQAVV 233
Query: 241 KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
SIEDHG + G+ ++TGFL + ++ N V+ LL V+ DR + +LS
Sbjct: 234 SSIEDHGIVFDIGINNYTGFLSKKHI--NDFPFVEGQSLLCSVISKEDR---IFHLS--- 285
Query: 301 DTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
++ TK L+ + S+ ++PG ++ V I E+GV+ ++ T DI+H +
Sbjct: 286 --LTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYH-SSPVK 342
Query: 360 TTNWKNDYNQHKKVNARILFV---DPTSRAVG-----LTLNPYLLHNRAPPSHVKVGDIY 411
+ ++ + K V AR+LFV DP AV LT N + N P + +G I
Sbjct: 343 GEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSFLPHVLTFN-FATPNTPHPDQLDIGFIV 401
Query: 412 DQSKXXXXXXXXXXXXXIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
+ +K + +S A+++ +SD + YK S RI+ +
Sbjct: 402 NAAKVTYVSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEARIINY 461
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
+++ L + S D++ G V G + + G +V G+ L P H
Sbjct: 462 SYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTH 521
Query: 531 MSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
M++ + P ++FKVG+ + RVL V KR+ +T KK+L+ + L ++ Y +AT
Sbjct: 522 MADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQ 581
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
T G + +I + G V FYN V+ F P SE+ + + VGQ + I+S P +R
Sbjct: 582 TVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENR 641
Query: 649 RINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS-KGTIPTEHLAD- 706
++ + + + G G I L D
Sbjct: 642 KMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLCDG 701
Query: 707 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ 751
L + + + ++ + ++LVL ++S L LS K SL+ +A++
Sbjct: 702 DLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKE 748
Score = 235 (87.8 bits), Expect = 5.1e-57, Sum P(2) = 5.1e-57
Identities = 95/359 (26%), Positives = 166/359 (46%)
Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS--ELQEFQRR---F 1210
F + D I RV G ++ N L IS + + F L+ + PS ++ F + F
Sbjct: 915 FHKGD-KIRVRVLG-IHDSRNH-KFLPISHRVSPKQF-LELSVRPSILNMEPFSMKEPQF 970
Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDG---ISDKTVDISNDN-MQTFIHEGD----- 1261
G VTG V +++KE + + L P +G I D T D+ N +Q G
Sbjct: 971 KKGDEVTGFVNNVSKE--CVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKAIKCY 1028
Query: 1262 IVGGRISKILSGVGGLV----VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
+V S LS +G L + G L G+V T + L G+ G+ + +
Sbjct: 1029 VVNAEDSITLSAIGPLQGFENLTPGSRLVGKV--TNVNEAGAILQLPGHMSGRVSRIDMF 1086
Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
D+ + + V G + + + + +S+ NS S V+ K + ++DL
Sbjct: 1087 DDYDILPETKFTRNNLV-GVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKEINSVDDLK 1145
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
I +G+V NV ++G F+ + L A+V + L D +++ + F + +LV G ++ ++
Sbjct: 1146 IGDICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGID 1205
Query: 1438 PLSKRVEVTLKTSDSRTASQSEINN-LSNLHVGDIVIGQIKRVESYGLFITIENT-NLV 1494
SKR+E++LK S+ SEI +++ VG + G + +V YG+ I I+ T N+V
Sbjct: 1206 NDSKRIEMSLK--QSKIKDSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTDNIV 1262
Score = 157 (60.3 bits), Expect = 8.3e-49, Sum P(2) = 8.3e-49
Identities = 45/134 (33%), Positives = 69/134 (51%)
Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
L+ E+L+P + G V NV G + L + +V ++ D Y PE +F LV
Sbjct: 1044 LQGFENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLV 1103
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQ------SEINNLSNLHVGDIVIGQIKRVESYG 1483
VLSV+ +++V L +SRT SQ EIN++ +L +GDI G + V + G
Sbjct: 1104 GVCVLSVDVPNRKV--ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQG 1161
Query: 1484 LFITIENTNLVRNK 1497
LF+TI + + R K
Sbjct: 1162 LFVTIGHNLIARVK 1175
Score = 154 (59.3 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 72/326 (22%), Positives = 132/326 (40%)
Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEAT--DRLITHGWITKIEKHGCFVRFYNGVQG 611
LG K V + ++ S + L + T RL+ G +T + + G ++ + G
Sbjct: 1021 LGKAIKCYVVNAEDSITLSAIGPLQGFENLTPGSRLV--GKVTNVNEAGAILQLPGHMSG 1078
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXX 671
R ++ D P + + +V ++S +R++ LS T+
Sbjct: 1079 RVSRIDMFDDYDILPETKFTRNNLVGVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKEI 1138
Query: 672 XXXXXXXXXXXXXXXXXXIAKGYSKGTIPT--EHLADHLEHATVMKSVIK---PGYEFDQ 726
+A ++G T +L ++ + + IK P + +Q
Sbjct: 1139 NSVDDLKIGDICRGFVCNVA---NQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQ 1195
Query: 727 LLV-----LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
L+ +DN+S + +S K S I + ++ + I S + G V + + G +R
Sbjct: 1196 LVKGSIVGIDNDSKRIEMSLKQSKIKDSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRI 1255
Query: 782 LG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
G + G +S+ D ++SK Y G VR+++LDV+SE RI L LK S S
Sbjct: 1256 DGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDS 1315
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSE 865
M ++ EE + M + + SE
Sbjct: 1316 DISMSDN---EEDVEMRSEDQSDTSE 1338
Score = 123 (48.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 48/195 (24%), Positives = 83/195 (42%)
Query: 1299 VSDPLSGYDEGQFDPLSGYDE-GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST-NS 1356
VS L + + +SG+ + KV IS G + V+ + + + S N
Sbjct: 409 VSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPN-SGPYKVDSTHEARIINYSYVDNL 467
Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
LS + +IED+ V G + + +G + +S ++ V ++++D +
Sbjct: 468 YILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL 527
Query: 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
+ PE+ F +G V RVLS L KRV +TLK S T I + G +G +
Sbjct: 528 QFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNT-DLPLIYDYEQATPGTQTVGTL 586
Query: 1477 KRVESYGLFITIENT 1491
R+ G + N+
Sbjct: 587 ARIFEDGAIVEFYNS 601
Score = 101 (40.6 bits), Expect = 6.3e-43, Sum P(2) = 6.3e-43
Identities = 27/101 (26%), Positives = 52/101 (51%)
Query: 852 KIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 910
++++ QS + SE+ K +GS ++G V + D+GV++ + ++ G ++A
Sbjct: 1212 EMSLKQSKIKDSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIA 1271
Query: 911 GATV-------ESGSVIQAAILDVAKAERLVDLSLKTVFID 944
A V SG ++A +LDV +R + L LK+ + D
Sbjct: 1272 DAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYFD 1312
Score = 99 (39.9 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 83/357 (23%), Positives = 151/357 (42%)
Query: 1145 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1204
+T+S IG FE +++ G R+ G V V+ A+L + H+ ++ +D + L
Sbjct: 1036 ITLSAIGPLQGFE--NLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDILP 1093
Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDI 1262
E +F V VLS++ + + L R + V+I + + + + GDI
Sbjct: 1094 E--TKFTRNNLVGVCVLSVDVPNRKVALSAR--NSRTQSQPVEIKDKEINSVDDLKIGDI 1149
Query: 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
G + + + GL V IG +L RV EL + + D + P + Q
Sbjct: 1150 CRGFVCNVANQ--GLFVTIGHNLIARVKIGELFDTFIKD---------WKP--HFHVNQL 1196
Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSL--DGMSSTNS-SDLSTDVDTPGKHLEKIEDLSPN 1379
VK ++ I + +E+SL+ S D T + +D++ + G + K+ D
Sbjct: 1197 VKGSIVGIDNDSK---RIEMSLKQSKIKDSSEITKTFADIAVGSNLDGT-VVKVGDYGVL 1252
Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVL-LSNL-SDGY--------VESPEKEFPIGKLV 1429
+ + G N+ C S DA VL +S L S G V+S ++ +G L
Sbjct: 1253 IRIDG-TDNIVGL-CH--KSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALG-LK 1307
Query: 1430 AGRVLSVEPLS---KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
+ S +S +V +++ D S+SE+ + D+ +++ +ES G
Sbjct: 1308 SSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEVGSKD-----DVQSEEVENLESAG 1359
Score = 98 (39.6 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 41/193 (21%), Positives = 84/193 (43%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+G + + + + L + G R+ I E+ D +++ +F + Q V I+
Sbjct: 1146 IGDICRGFVCNVANQGLFVTIGHNLIARVKIGELFD---TFIKDWKPHFHVNQLVKGSIV 1202
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
N D K+ E+S+K S + S S++ D+++G + G V KV + L+
Sbjct: 1203 GIDN--DSKRI---EMSLKQSKIKDS---SEITKTFADIAVGSNLDGTVVKVGDYGVLIR 1254
Query: 1183 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP-FQDGI 1241
I S + + + + G V HVL ++ EK+ + L L+ + D
Sbjct: 1255 IDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSD 1314
Query: 1242 SDKTVDISNDNMQ 1254
SD ++ + ++++
Sbjct: 1315 SDISMSDNEEDVE 1327
Score = 70 (29.7 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
I DL + G+V+N T+ G F+ L A V + +S+ YV P + + V
Sbjct: 755 ITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAYISEEYVPVPSAVYKPQQSVTCV 814
Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
LSVE ++ ++ K + E S + + V IK+ Y
Sbjct: 815 CLSVELSQEKAFMSFKPLAQKQEKAVEFME-SKYDIDNPVDETIKKTYDY 863
Score = 64 (27.6 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 42/193 (21%), Positives = 80/193 (41%)
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP----------RSKAVDGQRADLSKTYY 807
+I P S++ G + I V LTG+ P R ++D D + T
Sbjct: 105 NITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEE 164
Query: 808 V-GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
G + +++D+ + +S+ +T + + H L L+ NGS
Sbjct: 165 EDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTG-KRHIELS-----LKPQDANGSAP 218
Query: 867 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY-GFITHHQLAGATVESGSVIQAAIL 925
+ + F+ GS+I+ V D G+V F+ + Y GF++ + G + ++
Sbjct: 219 EAAD-FVAGSMIQAVVSSIEDHGIV--FDIGINNYTGFLSKKHINDFPFVEGQSLLCSV- 274
Query: 926 DVAKAERLVDLSL 938
++K +R+ LSL
Sbjct: 275 -ISKEDRIFHLSL 286
Score = 61 (26.5 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 29/92 (31%), Positives = 43/92 (46%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
I G V G I+K++ G+VV I + G V T + +I + QF P
Sbjct: 487 IEVGQFVDGTIAKLIPQ--GIVVTISEGINGLVPSTHMADIAL----------QF-PERR 533
Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348
+ G VKC+VL + +R V L+L+ SL
Sbjct: 534 FKVGSSVKCRVLS-TNVLRK--RVLLTLKKSL 562
Score = 59 (25.8 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 36/156 (23%), Positives = 62/156 (39%)
Query: 1071 ITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1129
IT I L RL I H + +D N + +L +K+GQ V + A ++
Sbjct: 138 ITNISDKLSDRLD-SIDNHAEDNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENT 196
Query: 1130 MK--KSFLWELSIKP-----SMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD-NEWALL 1181
K K + ELS+KP S ++ + + + SI G V+ + N +
Sbjct: 197 TKTGKRHI-ELSLKPQDANGSAPEAADFVAGSMIQAVVSSIEDH--GIVFDIGINNYTGF 253
Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
+H+ F+ + S + + R FH+ T
Sbjct: 254 LSKKHINDFPFVEGQSLLCSVISKEDRIFHLSLTAT 289
Score = 55 (24.4 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
GSL+ +I +I L+L + G + IT ++D S+ ++++
Sbjct: 109 GSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSI 152
Score = 50 (22.7 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
VG ++EI + L + + G R H+ +V+ +K + L S++ + I
Sbjct: 1262 VGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDS---DIS 1318
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
N+ D++ S S + SE+GSK
Sbjct: 1319 MSDNEEDVEMR-----SEDQSDTSESEVGSK 1344
Score = 49 (22.3 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 1312 DPLSGYDEGQFVKCKVLEI---SRTVRGTFHVELSLRSSLDGMSSTNSSD 1358
D + Y GQ+V+ V + + T G H+ELSL+ S+ ++D
Sbjct: 173 DLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAPEAAD 222
Score = 39 (18.8 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 846 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF--GVVVSFEEHSDVYGF 903
H LLE + L S+H G +E F I G G++ S+ + D++
Sbjct: 1566 HGLLERSLQSLPKSEHVGI----IEKFAILEFKNGDPERGRTIFEGLLSSYPKRLDLWNV 1621
Query: 904 I 904
+
Sbjct: 1622 L 1622
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 482 (174.7 bits), Expect = 3.7e-54, Sum P(3) = 3.7e-54
Identities = 187/772 (24%), Positives = 325/772 (42%)
Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIED 245
IF +G + + +D K K++I + + +L VKSIED
Sbjct: 180 IFKLGSWLKAKITTSHEDYKN--KKRIELTIEPESVNENLEVDDLIVNNILQCSVKSIED 237
Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDT 302
HG IL G ++GF+ L N+ IDV PGL++ + S R + L T
Sbjct: 238 HGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPTTAT 295
Query: 303 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 362
VS T SID + PG++V + + ENG++ GT+ + +QN F
Sbjct: 296 VSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FELKE 354
Query: 363 WKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQ 413
K+ Y V AR+L V + T + + L++ P++L S + +G ++DQ
Sbjct: 355 LKHKYAIGSTVKARVLAVLLKNGTKKLI-LSILPHVLQLGDDSSQTEALEAFPIGHVFDQ 413
Query: 414 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
K S+ + I ++ + L Y GS + R++GF +
Sbjct: 414 VKVIGNDKHYVYVSF-----GSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFNEV 467
Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPH 530
+ L ++ + DV G ++ +++ V D G V+F K P
Sbjct: 468 DNLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPGNQ 527
Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLIT 589
MS+ ++V P +KF+VG + R+L KR VT +K LV + ILS +A T
Sbjct: 528 MSDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKT 587
Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
+ + K +GC V F+ ++ F P++E+ + SS +GQ+VK RI+ +R
Sbjct: 588 NAIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQKR 647
Query: 650 INLSFM----MKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA 705
+ ++ + + +E + + +G I L+
Sbjct: 648 LVVTLKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVELEGSHLRGVIYDGQLS 707
Query: 706 D-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSAQQ--LPSDASHIH 760
D + E + + G E ++L+LD + + ++ +AK SLI++++ P + S I
Sbjct: 708 DGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEFSDIA 766
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
N VV GYV ++ G FV F GRLTG DLSK ++ QS+ +L V+
Sbjct: 767 VNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRVLSVD 826
Query: 821 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIE 879
E R L+L S + D + + +KI A Q + +K V+G + +
Sbjct: 827 KENERFLLTLNNSSSFTKDDEQLIKPIDATKKIVADYQPGETTKVVIKAVKGTQLNVQLA 886
Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
+ D + F+ D+ HQ ++ + G + ++ + A+
Sbjct: 887 DNLQGRVD--ITQCFKSIKDIKNL---HQPLASSFQKGETLDVKVIGIHDAK 933
Score = 237 (88.5 bits), Expect = 4.0e-16, Sum P(4) = 4.0e-16
Identities = 172/797 (21%), Positives = 314/797 (39%)
Query: 729 VLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
+L+ L++ + +L+N ++ SD + V + GC V F G L
Sbjct: 550 LLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKTNAIVEKFVPNGCIVSFFGNLKA 609
Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
F P+++ + D S +GQ V+ ILDVN E R+ ++LKQS ++ S Q++
Sbjct: 610 FLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQKRLVVTLKQS----SELSNAQKN- 664
Query: 848 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 907
+I+ L S K I+ +V+ K +S V+V E S + G I
Sbjct: 665 ----EISKLVSGKS-----------IVKTVVVEKTKDS----VLVELEG-SHLRGVIYDG 704
Query: 908 QLAGATVESGSVIQAAILDVAKAERLV---DLSLKTVFIDRFREAXXXXXXXXXXXXXXX 964
QL+ E + + E L+ DL +TV +
Sbjct: 705 QLSDGNYEQNRALAKRLAIGETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEFS- 763
Query: 965 XXDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIAT 1024
D+ V+ V V+ V L ++ + A N + K+F QS+
Sbjct: 764 --DIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCR 821
Query: 1025 VMALPSSSTAGRLLL-----LLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLEL 1079
V+++ + L L K Y G + I +K +L
Sbjct: 822 VLSVDKENERFLLTLNNSSSFTKDDEQLIKPIDATKKIVADYQPGETTKVVIKAVKGTQL 881
Query: 1080 RLKFGIGFHGRIHITE----VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
++ GR+ IT+ + D K N+ + L S+F+ G+T+ ++I + + +FL
Sbjct: 882 NVQLADNLQGRVDITQCFKSIKDIK-NLHQPLASSFQKGETLDVKVIGIHDAKN--HTFL 938
Query: 1136 ---WELSIKPSMLTVS----EIGSKLL--FEECDVSIGQRVTGYVYKVDNEWALLTISRH 1186
S + ++L +S +I +KLL + D G V +V + N ++IS
Sbjct: 939 PITHRKSNRTTILELSLNNPQINNKLLTDLKLADFKQGDEVLAFVNNITNGMVWVSISPT 998
Query: 1187 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP-----FQDGI 1241
+K ++ +LD + S Q+ + IG A+ V ++ + ++L L R F+D
Sbjct: 999 IKGRIPMLDLTEDGSIFQDIDNKLPIGNAINVKVKQVDLQHQILVLTARKNFIEKFEDVR 1058
Query: 1242 SDKT-----VDISNDNMQTFIHEGDIVGGRISKILSGVGGL---VVQIGPHLYGRVHFTE 1293
D+T + I +++ + I ++ L+ V + ++ +V +
Sbjct: 1059 QDQTYPARIIKIKPNHVLVELGNNVIASSFVTDALNDYSDKLDHVFNVNDYVSAKVLDID 1118
Query: 1294 LKNICVSDPLSGYDEGQ---FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
N +S L G + +S GQ +K V IS G + +SL S+
Sbjct: 1119 STNKRISVSLRTDKAGSDKVINSISDLTRGQVIKGFVKNISNN--GVY---VSLGRSIYA 1173
Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
+ SDLS D+ K + PN V G + N +G +M ++ + L
Sbjct: 1174 L--VRVSDLS---DSYLKDWQNF--FKPNQPVIGKIVNCKQEGRILMTLKESEVNGELK- 1225
Query: 1411 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV--TLKTSD---SRTASQSEINNLSN 1465
+ + IG + G V S V++ T+ S S+++++N+ +
Sbjct: 1226 -----IMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHSEISENDVDNVKS 1280
Query: 1466 LH-VGDIVIGQIKRVES 1481
L GD V +I +++S
Sbjct: 1281 LFGTGDRVKVKILKIDS 1297
Score = 180 (68.4 bits), Expect = 3.7e-54, Sum P(3) = 3.7e-54
Identities = 46/173 (26%), Positives = 89/173 (51%)
Query: 1322 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN---SSDLSTDVDTPGKHLEKIEDLSP 1378
FV + + S + F+V + + + + STN S L TD K + I DL+
Sbjct: 1088 FVTDALNDYSDKLDHVFNVNDYVSAKVLDIDSTNKRISVSLRTDKAGSDKVINSISDLTR 1147
Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
+++G+VKN+++ G ++ L R + A V +S+LSD Y++ + F + V G++++ +
Sbjct: 1148 GQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQ 1207
Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
R+ +TLK S+ + +L +GDI G + +G+F+ ++ T
Sbjct: 1208 -EGRILMTLKESEVN-GELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGT 1258
Score = 125 (49.1 bits), Expect = 3.9e-47, Sum P(4) = 3.9e-47
Identities = 25/119 (21%), Positives = 61/119 (51%)
Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
+EK ED+ + + + + L + A +++ + Y + + F + V
Sbjct: 1051 IEKFEDVRQDQTYPARIIKIKPNHVLVELGNNVIASSFVTDALNDYSDKLDHVFNVNDYV 1110
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
+ +VL ++ +KR+ V+L+T + S IN++S+L G ++ G +K + + G+++++
Sbjct: 1111 SAKVLDIDSTNKRISVSLRTD--KAGSDKVINSISDLTRGQVIKGFVKNISNNGVYVSL 1167
Score = 103 (41.3 bits), Expect = 0.00071, Sum P(4) = 0.00071
Identities = 33/117 (28%), Positives = 57/117 (48%)
Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
N IV+ +V N GC + L A + + +S+ +V+ IG++V R+L V
Sbjct: 588 NAIVEKFVPN----GCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNK 643
Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY--GLFITIENTNL 1493
KR+ VTLK S + +Q N +S L G ++ + VE + + +E ++L
Sbjct: 644 EQKRLVVTLKQSSELSNAQK--NEISKLVSGKSIVKTVV-VEKTKDSVLVELEGSHL 697
Score = 92 (37.4 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 72/336 (21%), Positives = 138/336 (41%)
Query: 967 DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
DL V+ + V+ ++++ ++L + +S G+ S + + + G ++ ++
Sbjct: 221 DLIVNNILQCSVKSIEDHGIILDTGKQEYS-GFISNKELTNAQIDVNTIVPGLVILCSIA 279
Query: 1027 ALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLK-FGI 1085
+ PS T L A G +V A I ++ L K +G+
Sbjct: 280 SKPSGRTIN--LKPTTATVSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGL 337
Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
G I ++++ + + ++ L + IG TV AR++A K KK L SI P +L
Sbjct: 338 -VDGTIALSQIQNFE---LKELKHKYAIGSTVKARVLAVLLKNGTKKLIL---SILPHVL 390
Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF--ILDSAYEPSE- 1202
+ + S+ E IG V V + N+ + +S + LF I S ++ ++
Sbjct: 391 QLGDDSSQTEALEA-FPIGH-VFDQVKVIGNDKHYVYVSFG-SSSLFGQIHQSKFDDNKS 447
Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1262
L ++ IG V+ N+ LL L F+ K +D N++ + G +
Sbjct: 448 LLDYS----IGSTHKSRVIGFNEVDNLLILT---FES----KVIDAEYLNVRD-VPIGKL 495
Query: 1263 VGG-RISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
+ I K+L G+ V+ G V ++ +I
Sbjct: 496 LPNVEILKVLEDGVGINVKFFDEFKGFVPGNQMSDI 531
Score = 78 (32.5 bits), Expect = 4.0e-16, Sum P(4) = 4.0e-16
Identities = 46/237 (19%), Positives = 97/237 (40%)
Query: 441 TISDVAEEEVRKLEKKYKEGSCVRVRIL----GFRHLEGLATGILKASAFEGLVFTHSDV 496
T E+E L K +K GS ++ +I +++ + + I S E L D+
Sbjct: 165 TFKSKTEKEFPDLFKIFKLGSWLKAKITTSHEDYKNKKRIELTIEPESVNENLEV--DDL 222
Query: 497 KPGMVVKGKVIAVDSFGAIV-----QFPGGVKALCPLPHMSEFEIVKPGKKF--KVGAEL 549
+++ V +++ G I+ ++ G + + + PG + ++
Sbjct: 223 IVNNILQCSVKSIEDHGIILDTGKQEYSGFISNKELTNAQIDVNTIVPGLVILCSIASKP 282
Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
R + +K TV+ KKT V + +SS +I I + ++G + Y V
Sbjct: 283 SGRTINLKPTTATVSAKKTTVST----ISSIDSIQPGVIVDALINDVTENGLVTKVYGLV 338
Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI--PASRRINLSFMMKPTRVSED 664
G S++ E Y +G VK R+++ + ++++ LS + ++ +D
Sbjct: 339 DGTIALSQIQNFELKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDD 395
Score = 54 (24.1 bits), Expect = 8.6e-40, Sum P(4) = 8.6e-40
Identities = 36/201 (17%), Positives = 79/201 (39%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G +++ + I + + G + + +++++D +N F K Q V +I+
Sbjct: 1148 GQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFF---KPNQPVIGKIV- 1203
Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
+ K+ +++K S + E+ F+ D+ IG G V + + +
Sbjct: 1204 -----NCKQEGRILMTLKESEVN-GELKIMKTFD--DLQIGDIFEGTVTSTTDFGVFVKL 1255
Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
+ S +++ + F G V +L I+ EK+ L L ++ I+D
Sbjct: 1256 DGTVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQLSLGMKASYF-ITD 1314
Query: 1244 KTVDISNDNMQTFIHEGDIVG 1264
+ ND+ + + VG
Sbjct: 1315 SGKE-DNDDEDVEMEDASEVG 1334
Score = 50 (22.7 bits), Expect = 3.7e-54, Sum P(3) = 3.7e-54
Identities = 21/99 (21%), Positives = 34/99 (34%)
Query: 54 FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLF 111
FPRGG L+ E EI E D FE E ++ + + +
Sbjct: 16 FPRGGSKPLSALEVKEISNEATKDVLFEQAESNKRSNSNKSDQPKKKHKKSSKNKSKNDK 75
Query: 112 GDGISGKLPRYA-NKITLKNISAGMKLWGVVAEVNEKDL 149
D KN+ +G + G + +N+ D+
Sbjct: 76 NDNDEETTQSVTIETFNFKNLVSGSTVLGQIKTINKLDI 114
Score = 48 (22.0 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 177 ANEDNLLPTIFHVGQLVSCIVLQLDDDKK 205
ANED L FH Q ++C VL +D + +
Sbjct: 804 ANED--LSKKFHKYQSINCRVLSVDKENE 830
Score = 47 (21.6 bits), Expect = 7.8e-53, Sum P(4) = 7.8e-53
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 18 KFNKASKNQFKNSKKQINDAVEAQDLAL 45
K K+SKN+ KN K ND Q + +
Sbjct: 62 KHKKSSKNKSKNDKND-NDEETTQSVTI 88
Score = 47 (21.6 bits), Expect = 3.4e-07, Sum P(4) = 3.4e-07
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
+LF FK+G + A+I ++ D K EL+I+P
Sbjct: 176 DLFKIFKLGSWLKAKIT--TSHEDYKNKKRIELTIEP 210
Score = 39 (18.8 bits), Expect = 7.8e-53, Sum P(4) = 7.8e-53
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 106 DLGSLFGDGISGKLP 120
D+G GD ++G +P
Sbjct: 113 DIGLALGDNLTGYIP 127
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 212 (79.7 bits), Expect = 1.1e-47, Sum P(6) = 1.1e-47
Identities = 57/188 (30%), Positives = 104/188 (55%)
Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
D + DP Y + + V+ ++ + + R + LSLR S SS L V P
Sbjct: 1168 DFSKADP-HAYHKNEVVRSCIIGVDKANR---KIHLSLRPS-----KVLSSSLP--VQDP 1216
Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
+ +E + N I++G+V+ V+ G F+ + + A + +S+LSD Y++ + F +G
Sbjct: 1217 --EITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIVAFIRISDLSDSYLKEWKDSFQVG 1274
Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
+LV GRV V+P +K+++++LK S + ++ I L +L G IV G++++VE +G FI
Sbjct: 1275 QLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPIT-LYDLKPGQIVTGKVRKVEQFGAFI 1333
Query: 1487 TIENTNLV 1494
I+ ++ V
Sbjct: 1334 VIDGSSNV 1341
Score = 191 (72.3 bits), Expect = 1.1e-47, Sum P(6) = 1.1e-47
Identities = 59/225 (26%), Positives = 106/225 (47%)
Query: 439 YVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
+V +S +A+ +V + +K G+ R++G+ ++ L + + D
Sbjct: 483 FVHVSRLADGQVETISSDHGPFKVGTTHEARVVGYSAIDNLYSLSFERKVINQPFLRLED 542
Query: 496 VKPGMVVK---GKVIAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
V G VVK KV+ +S G IV G+ P H ++ + P KKF+ G +
Sbjct: 543 VTLGAVVKVTITKVLVGESGVTGLIVSLTDGITGFIPSVHFADTRLQFPEKKFREGLSIT 602
Query: 551 FRVLGVK-SKR-ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
RVL V KR + +T KK+L+ ++ A+ Y + + G I I +G V+FY
Sbjct: 603 ARVLSVNLEKREVRLTLKKSLLNTEAAVWKDYRDILPGAQSPGTIINILPNGAVVQFYGN 662
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
V+G+ SE+ +PS + +GQVV ++ + ++++S
Sbjct: 663 VRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKLSVS 707
Score = 182 (69.1 bits), Expect = 1.3e-45, Sum P(5) = 1.3e-45
Identities = 87/431 (20%), Positives = 166/431 (38%)
Query: 170 ILDNEIEANEDNL-LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWXXXXXXXXXXXX 225
+L+ + +++E+ L F++GQ + V+ + + D K++I
Sbjct: 198 MLEEDEDSDEEEFDLHDYFYLGQYLRTYVVSVGNKSADASSKSKKRIELSIDPRSANTGL 257
Query: 226 XXETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQG 282
+ + A V S+EDHG ++ G+ GF+ + + +K G +
Sbjct: 258 QKTDLVVNAAVQASVVSVEDHGLVMDLGIEGTDVRGFMSSKEIDPRTDYSTIKEGSVFLC 317
Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS--IDLLVPGMMVSTRVQSILENGVMLS 340
+V + V+ LS++ + ++ I+ VPG+ + + G++
Sbjct: 318 MVTGQNANGNVIKLSANLQSSGSIKKSHFLSVAPTINSFVPGVAAEILLTDVSSTGMIGK 377
Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTL----NPY 394
+ TVD+ H T+ Y+ K+ RI P S +G ++ +
Sbjct: 378 IMGMLDTTVDLVHSGGATGKTDLTKKYHNGAKIKGRISCTFPGSEPYKIGFSMLDHVQKF 437
Query: 395 LLHNRAPPSH---VKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVR 451
P S + + ++ I ST +V +S +A+ +V
Sbjct: 438 SAEGHGPNSSDDAPAISAVIPEATIVNVDPGLGVYVKIGST--KHMGFVHVSRLADGQVE 495
Query: 452 KLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK---GK 505
+ +K G+ R++G+ ++ L + + DV G VVK K
Sbjct: 496 TISSDHGPFKVGTTHEARVVGYSAIDNLYSLSFERKVINQPFLRLEDVTLGAVVKVTITK 555
Query: 506 VIAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITV 563
V+ +S G IV G+ P H ++ + P KKF+ G + RVL V ++ V
Sbjct: 556 VLVGESGVTGLIVSLTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREV 615
Query: 564 THKKTLVKSKL 574
+ TL KS L
Sbjct: 616 --RLTLKKSLL 624
Score = 161 (61.7 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 59/257 (22%), Positives = 120/257 (46%)
Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
+ ++ D L GM++ TRV + + V++ G VD+ ++ + F + + Y++++
Sbjct: 1123 ESLTFDDLSVGMVLPTRVTRVTDKQVIMQLNNTLVGAVDLINMADDFSKAD-PHAYHKNE 1181
Query: 372 KVNARILFVDPTSRAVGLTLNPY-LLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIP 430
V + I+ VD +R + L+L P +L + P ++ + +Q K
Sbjct: 1182 VVRSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSM-EQVKVNDIIRGFVRQVSDG 1240
Query: 431 STPVSTP----AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE-GLATGIL 481
V+ A++ ISD+++ +++ + ++ G V+ R+ + L+ L +L
Sbjct: 1241 GLFVTVGHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVL 1300
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKP 539
S ++ + T D+KPG +V GKV V+ FGA + G V LC M++ +
Sbjct: 1301 DPS-YKAPI-TLYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDA 1358
Query: 540 GKKFKVGAELVFRVLGV 556
++ G + +VL V
Sbjct: 1359 RTLYEEGDAVKAKVLKV 1375
Score = 155 (59.6 bits), Expect = 1.1e-47, Sum P(6) = 1.1e-47
Identities = 57/256 (22%), Positives = 125/256 (48%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTAR 1120
VG +++ +I +K ++ +K GRI ++EV D ++ + +F+ GQ +TA+
Sbjct: 939 VGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFDSWEDISDKKQPLKHFRPGQVITAK 998
Query: 1121 II----AKSNK--PDMKKS--F-LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
++ A+S P ++ F ++ELS+KP + + L ++ V G G+V
Sbjct: 999 VLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVKADN-ATPLTIDQ--VQAGSSSFGFV 1055
Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
V N++ +++S +++ +L +D++ + S L + ++++ IG A+ V ++ EK +
Sbjct: 1056 NNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIEKQYPIGCALKFRVTGVDAEKGHID 1115
Query: 1232 LVLRPFQDGIS--DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV------VQIGP 1283
L R + ++ D +V + T + + ++ +++ L G L+ + P
Sbjct: 1116 LSARERSESLTFDDLSVGMVLPTRVTRVTDKQVIM-QLNNTLVGAVDLINMADDFSKADP 1174
Query: 1284 HLYGRVHFTELKNICV 1299
H Y H E+ C+
Sbjct: 1175 HAY---HKNEVVRSCI 1187
Score = 150 (57.9 bits), Expect = 4.1e-30, Sum P(5) = 4.1e-30
Identities = 73/314 (23%), Positives = 139/314 (44%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
VG ++ +T + ++ ++ G + + + DD S + + + V + II
Sbjct: 1132 VGMVLPTRVTRVTDKQVIMQLNNTLVGAVDLINMADDFSKADPHAYHK---NEVVRSCII 1188
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEI---GSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
+K + K LS++PS + S + ++ E V + + G+V +V +
Sbjct: 1189 GV-DKANRKI----HLSLRPSKVLSSSLPVQDPEITSME-QVKVNDIIRGFVRQVSDGGL 1242
Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
+T+ ++ A FI S S L+E++ F +G+ V G V ++ E K L++ L+
Sbjct: 1243 FVTVGHNIVA--FIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLK---- 1296
Query: 1240 GISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
D +D S T + G IV G++ K+ +V+ ++ G H TE+ +
Sbjct: 1297 ---DSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADT 1353
Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
V D + L Y+EG VK KVL++ R +G + L++S + + S
Sbjct: 1354 RVEDART---------L--YEEGDAVKAKVLKVDRD-QGK--ISFGLKASYFNDDAEDES 1399
Query: 1358 DLSTDVDTPGKHLE 1371
+ D D+ G L+
Sbjct: 1400 SGNEDSDSDGVSLD 1413
Score = 140 (54.3 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 60/305 (19%), Positives = 129/305 (42%)
Query: 541 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
K++ +G L FRV GV +++ H + + L+ + + + ++ +T++
Sbjct: 1092 KQYPIGCALKFRVTGVDAEK---GHIDLSARERSESLT-FDDLSVGMVLPTRVTRVTDKQ 1147
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
++ N + G + D YH +VV+ I+ A+R+I+LS ++P++
Sbjct: 1148 VIMQLNNTLVGAVDLINMADDFSKADPHAYHKNEVVRSCIIGVDKANRKIHLS--LRPSK 1205
Query: 661 VSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPT--EHLADHLEHATVMKSVI 718
V + + G T ++ + + + S +
Sbjct: 1206 VLSSSLPVQDPEITSMEQVKVNDIIRGF-VRQVSDGGLFVTVGHNIVAFIRISDLSDSYL 1264
Query: 719 KP---GYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
K ++ QL+ ++D E+ L +S K S+++ + + P + P +V G V
Sbjct: 1265 KEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVR 1324
Query: 771 NIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
+ + G F+ G ++G R++ D + D Y G +V++ +L V+ + G+I+
Sbjct: 1325 KVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKVDRDQGKISF 1384
Query: 829 SLKQS 833
LK S
Sbjct: 1385 GLKAS 1389
Score = 133 (51.9 bits), Expect = 3.6e-34, Sum P(5) = 3.6e-34
Identities = 83/361 (22%), Positives = 146/361 (40%)
Query: 322 GMMVSTRVQSIL--ENGV---MLSFLTYFTGTVDIFHLQNT---FPTTNWKNDYNQHKKV 373
G +V + +L E+GV ++S TG + H +T FP + + + +
Sbjct: 546 GAVVKVTITKVLVGESGVTGLIVSLTDGITGFIPSVHFADTRLQFP----EKKFREGLSI 601
Query: 374 NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIPSTP 433
AR+L V+ R V LTL LL+ A DI ++ +
Sbjct: 602 TARVLSVNLEKREVRLTLKKSLLNTEAAVWK-DYRDILPGAQSPGTIINILPNGAVVQFY 660
Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG-LATGILKASAFEGLVFT 492
+ ++++S+++E ++ + +K G V V L +G L+ S T
Sbjct: 661 GNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKLSVSCRDQSLLADSYRT 720
Query: 493 -HSDVKPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGK---KFKVG 546
++PG V G V +++ GG+ A + +++ K K +VG
Sbjct: 721 AFKTIQPGQSVTGTVFEKSDDYVLLRLEDLGGLVARLGVGQVADGSASKRSSTLSKIRVG 780
Query: 547 AEL-VFRVLGV-KSKR-ITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGC 601
+L VL V ++ R I VT++ +L K+ + S++ + + G+I I G
Sbjct: 781 QKLNELVVLDVHRAHRLIHVTNRASLKKATKEGNMPSTFEDLREGAEVTGFIRNITPTGL 840
Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
FV+F G+ G PR +G + + QVV + S RR LS M P
Sbjct: 841 FVQFLGGLIGLVPRRLVGSEDSNKSEFGKANFQVVSATVHSLDTDFRRFILS--MDPAEA 898
Query: 662 S 662
+
Sbjct: 899 T 899
Score = 131 (51.2 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 137/644 (21%), Positives = 259/644 (40%)
Query: 882 VHESNDFGVVVSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLV 934
V ES G++VS + + GFI T Q G I A +L V +R V
Sbjct: 558 VGESGVTGLIVSLTD--GITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREV 615
Query: 935 DLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYN 994
L+LK ++ EA L Q+ I+ I+ N V+ Y
Sbjct: 616 RLTLKKSLLNT--EAAVWKDYRDI---------LPGAQSPGTIINILP-NGAVVQF--YG 661
Query: 995 HSIGYASVSDYNTQ--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXX 1052
+ G+ SVS+ + K P + F GQ + V AL ++ G+L + +
Sbjct: 662 NVRGWLSVSEMSEAYIKDPSQHFKLGQ--VVNVHALNVDASQGKLSVSCR---DQSLLAD 716
Query: 1053 XXXXXXXXYDVGSLVQAEITEIKP--LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 1110
G V + E + LRL+ G R+ + +V D ++ + S
Sbjct: 717 SYRTAFKTIQPGQSVTGTVFEKSDDYVLLRLEDLGGLVARLGVGQVADGSASKRSSTLSK 776
Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK-LLFEECDVSIGQRVTG 1169
++GQ + ++ ++ L ++ + S+ ++ G+ FE D+ G VTG
Sbjct: 777 IRVGQKLNELVVLDVHRAHR----LIHVTNRASLKKATKEGNMPSTFE--DLREGAEVTG 830
Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR-RFHIGKAVTGHVLSINKEKK 1228
++ + + L + E S EF + F + A T H L + +
Sbjct: 831 FIRNITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEFGKANFQVVSA-TVHSLDTDFRRF 889
Query: 1229 LLRLV------LRPFQDGI--SDKTVDISNDNM------QTFIHEGDIVGGRISKI-LSG 1273
+L + P ++ S K + D +T + DI GR+ K ++
Sbjct: 890 ILSMDPAEATHAGPKKESTKKSAKETAAAGDESLANPVDETLKAKSDITVGRVLKCKINS 949
Query: 1274 VGG--LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
V G + V++ ++ GR+ +E+ + + +S D+ Q PL + GQ + KVL +
Sbjct: 950 VKGTQINVKLADNVQGRIDVSEVFDSW--EDIS--DKKQ--PLKHFRPGQVITAKVLGL- 1002
Query: 1332 RTVRGTFHVELSLRSSLDGMS--STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
R ++ +S R+ + S + D TP +++++ S + G+V NV
Sbjct: 1003 HDARSYTYLPISHRTGKFNVYELSMKPKFVKADNATP-LTIDQVQAGSSSF---GFVNNV 1058
Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
++ ++ LS + ++ + SD + EK++PIG + RV V+ ++++
Sbjct: 1059 SNDFFWVSLSPNVRGRLRFIDASDDISLLADIEKQYPIGCALKFRVTGVDAEKGHIDLSA 1118
Query: 1448 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
+ +SE +L VG ++ ++ RV + + + NT
Sbjct: 1119 R-------ERSESLTFDDLSVGMVLPTRVTRVTDKQVIMQLNNT 1155
Score = 130 (50.8 bits), Expect = 4.4e-28, Sum P(5) = 4.4e-28
Identities = 32/125 (25%), Positives = 68/125 (54%)
Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
+DLS M++ V VT K + L+ L V L N++D + ++ + ++V +
Sbjct: 1128 DDLSVGMVLPTRVTRVTDKQVIMQLNNTLVGAVDLINMADDFSKADPHAYHKNEVVRSCI 1187
Query: 1434 LSVEPLSKRVEVTLKTSDSRTAS----QSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
+ V+ ++++ ++L+ S ++S EI ++ + V DI+ G +++V GLF+T+
Sbjct: 1188 IGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVG 1247
Query: 1490 NTNLV 1494
+ N+V
Sbjct: 1248 H-NIV 1251
Score = 129 (50.5 bits), Expect = 2.0e-23, Sum P(6) = 2.0e-23
Identities = 64/248 (25%), Positives = 109/248 (43%)
Query: 1068 QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
+A I + P L + +K G H G +H++ + D + + + FK+G T AR++ S
Sbjct: 459 EATIVNVDPGLGVYVKIGSTKHMGFVHVSRLADGQVETISSDHGPFKVGTTHEARVVGYS 518
Query: 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV---DNEWALLT 1182
+ L+ LS + + I L E DV++G V + KV ++ L
Sbjct: 519 AIDN-----LYSLSFERKV-----INQPFLRLE-DVTLGAVVKVTITKVLVGESGVTGLI 567
Query: 1183 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1242
+S FI + + LQ +++F G ++T VLS+N EK+ +RL L+ +
Sbjct: 568 VSLTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKK---SLL 624
Query: 1243 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1302
+ + D I G G I IL G VVQ ++ G + +E+ + DP
Sbjct: 625 NTEAAVWKDYRD--ILPGAQSPGTIINILPN--GAVVQFYGNVRGWLSVSEMSEAYIKDP 680
Query: 1303 LSGYDEGQ 1310
+ GQ
Sbjct: 681 SQHFKLGQ 688
Score = 125 (49.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 66/294 (22%), Positives = 123/294 (41%)
Query: 233 GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS----ID 288
GMVL V + D I+ + G + N+A++ VVRS +D
Sbjct: 1133 GMVLPTRVTRVTDKQVIMQLN-NTLVGAVDLINMADDFSKADPHAYHKNEVVRSCIIGVD 1191
Query: 289 RTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
+ + ++LS P V S +D + S++ + ++ V+ + + G+ ++
Sbjct: 1192 KANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIV 1251
Query: 347 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPPS- 403
+ I L +++ WK+ + + V R+ VDP ++ + ++L +L +AP +
Sbjct: 1252 AFIRISDLSDSY-LKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPITL 1310
Query: 404 -HVKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGS 461
+K G I K S+ VS + T ++D E+ R L Y+EG
Sbjct: 1311 YDLKPGQIVT-GKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTL---YEEGD 1366
Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
V+ ++L +G + LKAS F S G +++DSFG +
Sbjct: 1367 AVKAKVLKVDRDQGKISFGLKASYFNDDAEDESSGNEDSDSDG--VSLDSFGGV 1418
Score = 124 (48.7 bits), Expect = 1.3e-45, Sum P(5) = 1.3e-45
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD 755
G IP+ H AD + + G ++L ++ E + L+ K SL+N+ + D
Sbjct: 576 GFIPSVHFAD--TRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKD 633
Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
I P + G + NI+ G V+F G + G+ S+ + D S+ + +GQ V +
Sbjct: 634 YRDILPGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVH 693
Query: 816 ILDVNSETGRITLSLK 831
L+V++ G++++S +
Sbjct: 694 ALNVDASQGKLSVSCR 709
Score = 120 (47.3 bits), Expect = 1.1e-47, Sum P(6) = 1.1e-47
Identities = 50/199 (25%), Positives = 94/199 (47%)
Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSA--KYSLINSAQQ--LPSDASHIHPNSVVHGYVCN 771
S I+ G + ++L+VLD ++ L+ + SL + ++ +PS + + V G++ N
Sbjct: 775 SKIRVGQKLNELVVLDVHRAHRLIHVTNRASLKKATKEGNMPSTFEDLREGAEVTGFIRN 834
Query: 772 IIETGCFVRFLGRLTGFAPRSK--AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
I TG FV+FLG L G PR + D +++ K + Q V + + ++++ R LS
Sbjct: 835 ITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEFGKANF--QVVSATVHSLDTDFRRFILS 892
Query: 830 LKQSCCSSTDASFMQEHFL--LEEKIAMLQSSKHNGSE--LKWVEGFIIGSVIEGKVHES 885
+ + +T A +E +E A S N + LK +G V++ K++
Sbjct: 893 MDPA--EATHAGPKKESTKKSAKETAAAGDESLANPVDETLKAKSDITVGRVLKCKINSV 950
Query: 886 NDFGVVVSFEEHSDVYGFI 904
G ++ + +V G I
Sbjct: 951 K--GTQINVKLADNVQGRI 967
Score = 88 (36.0 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 39/164 (23%), Positives = 71/164 (43%)
Query: 727 LLVLDNESSNLLLSAKYSLINSAQ---QLPSDAS--HIHPNSVVHGYVCNIIETGCFVRF 781
++ +D + + LS + S + S+ Q P S + N ++ G+V + + G FV
Sbjct: 1187 IIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTV 1246
Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
+ F S D + ++ VGQ V+ + V+ E ++ +SLK S D S
Sbjct: 1247 GHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVL---DPS 1303
Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
+ L + K + + K ++ VE F VI+G + S
Sbjct: 1304 YKAPITLYDLKPGQIVTGK-----VRKVEQFGAFIVIDGSSNVS 1342
Score = 81 (33.6 bits), Expect = 3.2e-29, Sum P(6) = 3.2e-29
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
TG V +TGF P D + K + G S+ + +L VN E + L+LK+S
Sbjct: 564 TGLIVSLTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSL 623
Query: 835 CSSTDASFMQEH 846
+ T+A+ +++
Sbjct: 624 LN-TEAAVWKDY 634
Score = 81 (33.6 bits), Expect = 1.2e-26, Sum P(5) = 1.2e-26
Identities = 62/286 (21%), Positives = 112/286 (39%)
Query: 258 TGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK--CVTKDL 311
TGF+P + A+ + GL + V S++ ++ V L+ ++ V KD
Sbjct: 575 TGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKDY 634
Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF---PTTNWK--ND 366
+ D+L PG + +IL NG ++ F G + + + + P+ ++K
Sbjct: 635 R----DIL-PGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQV 689
Query: 367 YNQHK-KVNARILFVDPTSRAVGLTLNPY-LLHNRAPPSHVKVGDIYDQSKXXXXXXXXX 424
N H V+A + + R L + Y P G ++++S
Sbjct: 690 VNVHALNVDASQGKLSVSCRDQSLLADSYRTAFKTIQPGQSVTGTVFEKSDDYVLLRLED 749
Query: 425 XXXXIPSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV-RILGFRHLEGLATGILK 482
+ V A + S + + ++ +K E + V R H+ A+ LK
Sbjct: 750 LGGLVARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRAS--LK 807
Query: 483 ASAFEG-LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
+ EG + T D++ G V G + + G VQF GG+ L P
Sbjct: 808 KATKEGNMPSTFEDLREGAEVTGFIRNITPTGLFVQFLGGLIGLVP 853
Score = 71 (30.1 bits), Expect = 1.6e-31, Sum P(5) = 1.6e-31
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 739 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-- 796
LS K + + P + S G+V N+ +V + G A D
Sbjct: 1025 LSMKPKFVKADNATPLTIDQVQAGSSSFGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDI 1084
Query: 797 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
AD+ K Y +G +++ + V++E G I LS ++ S T
Sbjct: 1085 SLLADIEKQYPIGCALKFRVTGVDAEKGHIDLSARERSESLT 1126
Score = 71 (30.1 bits), Expect = 4.3e-20, Sum P(4) = 4.3e-20
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV 927
G ++ GKV + FG + + S+V G ++A VE G ++A +L V
Sbjct: 1316 GQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKV 1375
Query: 928 AKAERLVDLSLKTVFID 944
+ + + LK + +
Sbjct: 1376 DRDQGKISFGLKASYFN 1392
Score = 66 (28.3 bits), Expect = 1.1e-47, Sum P(6) = 1.1e-47
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 54 FPRGGGHSLTQRERDEIH--AEVDAEFE 79
FPRGGG LT ER +IH A D FE
Sbjct: 58 FPRGGGSVLTPLERKQIHIKATKDVLFE 85
Score = 61 (26.5 bits), Expect = 1.1e-47, Sum P(6) = 1.1e-47
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 311 LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
++G+S LVPG ++ +V SI + + +S TG V + + T
Sbjct: 144 IEGLSFKRLVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSKT 190
Score = 61 (26.5 bits), Expect = 1.2e-24, Sum P(5) = 1.2e-24
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-AENSGIDV--KPGL-LLQGV 283
E ++EG +T ++++I G + F L G +PR + +E+S K ++
Sbjct: 820 EDLREGAEVTGFIRNITPTGLFVQF-LGGLIGLVPRRLVGSEDSNKSEFGKANFQVVSAT 878
Query: 284 VRSIDRTRKVVYLSSDP 300
V S+D + LS DP
Sbjct: 879 VHSLDTDFRRFILSMDP 895
Score = 60 (26.2 bits), Expect = 5.1e-26, Sum P(6) = 5.1e-26
Identities = 32/111 (28%), Positives = 48/111 (43%)
Query: 716 SVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPSDASHIHP--NSVVHGYVCNI 772
S IK G F ++ N + N++ LSA +L +S S + P NS V G I
Sbjct: 307 STIKEGSVFLCMVTGQNANGNVIKLSA--NLQSSGSIKKSHFLSVAPTINSFVPGVAAEI 364
Query: 773 I-----ETGCFVRFLGRL--TGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ TG + +G L T S G + DL+K Y+ G ++ I
Sbjct: 365 LLTDVSSTGMIGKIMGMLDTTVDLVHSGGATG-KTDLTKKYHNGAKIKGRI 414
Score = 55 (24.4 bits), Expect = 1.3e-17, Sum P(5) = 1.3e-17
Identities = 24/120 (20%), Positives = 50/120 (41%)
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
+SC D + + H L + S E+ +E + +I G V + +D G+
Sbjct: 1184 RSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLF 1243
Query: 892 VSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFID 944
V+ H+ + FI L+ + ++ G +++ + V + + +SLK +D
Sbjct: 1244 VTVG-HN-IVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLD 1301
Score = 54 (24.1 bits), Expect = 7.6e-33, Sum P(6) = 7.6e-33
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
K EGL F + PG ++ G+V ++++ + P + PL +S+
Sbjct: 140 KGVRIEGLSFKR--LVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSK 189
Score = 52 (23.4 bits), Expect = 1.8e-24, Sum P(4) = 1.8e-24
Identities = 32/167 (19%), Positives = 71/167 (42%)
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
P +++ G V +I + LTG+ P + + + K + D++
Sbjct: 154 PGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSKTLESKIEKMLEEDEDSDEEEFDLH 213
Query: 821 SE--TGRITLSLKQSCCS-STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
G+ + S + S DAS + + ++++ S + G L+ + ++ +
Sbjct: 214 DYFYLGQYLRTYVVSVGNKSADASSKSKKRI---ELSIDPRSANTG--LQKTD-LVVNAA 267
Query: 878 IEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG----ATVESGSV 919
++ V D G+V+ E +DV GF++ ++ +T++ GSV
Sbjct: 268 VQASVVSVEDHGLVMDLGIEGTDVRGFMSSKEIDPRTDYSTIKEGSV 314
Score = 48 (22.0 bits), Expect = 1.5e-33, Sum P(6) = 1.5e-33
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMM 656
YH G +K RI + P S + F M
Sbjct: 404 YHNGAKIKGRISCTFPGSEPYKIGFSM 430
Score = 47 (21.6 bits), Expect = 4.8e-17, Sum P(5) = 4.8e-17
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIV----KPGKKFKVGAE 548
SD+ G V+K K+ +V V+ V+ + + + +E + +P K F+ G
Sbjct: 935 SDITVGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFDSWEDISDKKQPLKHFRPGQV 994
Query: 549 LVFRVLGVKSKR 560
+ +VLG+ R
Sbjct: 995 ITAKVLGLHDAR 1006
Score = 44 (20.5 bits), Expect = 8.9e-19, Sum P(6) = 8.9e-19
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 919 VIQAAILDVAKAERLVDLSLK 939
V+++ I+ V KA R + LSL+
Sbjct: 1182 VVRSCIIGVDKANRKIHLSLR 1202
Score = 41 (19.5 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP---DMKKSFLWELSIKP 1142
E ++D +L F +GQ + +++ NK K ELSI P
Sbjct: 200 EEDEDSDEEEFDLHDYFYLGQYLRTYVVSVGNKSADASSKSKKRIELSIDP 250
Score = 39 (18.8 bits), Expect = 2.0e-45, Sum P(6) = 2.0e-45
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 431 STPVSTPAYVTISDVAEEEVRKLEKKYKE 459
S P + YV ++ V++ K+EK +E
Sbjct: 173 SLPNNLTGYVPLTSVSKTLESKIEKMLEE 201
Score = 39 (18.8 bits), Expect = 6.3e-37, Sum P(5) = 6.3e-37
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 620 LDPGCEPSSMYHVGQVVKCRIMS 642
+D + S VG+V+KC+I S
Sbjct: 927 VDETLKAKSDITVGRVLKCKINS 949
Score = 37 (18.1 bits), Expect = 1.9e-32, Sum P(6) = 1.9e-32
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
R EL +DP + + VV + +S+
Sbjct: 243 RIELSIDPRSANTGLQKTDLVVNAAVQASV 272
Score = 37 (18.1 bits), Expect = 8.9e-19, Sum P(6) = 8.9e-19
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGI 1085
Y+ G V+A++ ++ + ++ FG+
Sbjct: 1362 YEEGDAVKAKVLKVDRDQGKISFGL 1386
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 221 (82.9 bits), Expect = 2.5e-45, Sum P(4) = 2.5e-45
Identities = 80/246 (32%), Positives = 121/246 (49%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTAR 1120
+GS+V+A+I +K +L + HGR+ I EV D + + SN+K + +
Sbjct: 894 IGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVK 953
Query: 1121 IIA----KSNK--P---DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
II KS+K P + K+ + ELS+KPS L E+ +K L EE ++IGQ +TG+V
Sbjct: 954 IIGNHDVKSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSL-EE--INIGQELTGFV 1010
Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLL 1230
LTIS LKA++ +LD A S E + F +G A+ V SI++E
Sbjct: 1011 NNSSGNHLWLTISPVLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE---- 1066
Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
F + I VDI NM T I GD + GR+ KI +++ +G + G
Sbjct: 1067 ----HGFVNAIGKSHVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTGISF 1116
Query: 1291 FTELKN 1296
T+ N
Sbjct: 1117 ITDALN 1122
Score = 207 (77.9 bits), Expect = 3.7e-31, Sum P(3) = 3.7e-31
Identities = 128/611 (20%), Positives = 234/611 (38%)
Query: 572 SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
++L ++S+Y A + T I + +GC + F+ G+ GF P SE+ P
Sbjct: 589 NELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPE 648
Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXX 687
+GQ V +++ RRI + + + ++
Sbjct: 649 EHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTK 708
Query: 688 XXIAKGYS----KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSA 741
+ +G I HL+D +E ++ G E L++ D + +S
Sbjct: 709 DSVIVEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSL 768
Query: 742 KYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
K SLI A++ LP D ++ + +H Y+ +I + G FV F G+ G S AVD
Sbjct: 769 KSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVD 828
Query: 797 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
+ D+SK +Y+ QSV +L + + + LSLK A ++E ++K+
Sbjct: 829 SRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLK--------APKVKEE---KKKVESN 877
Query: 857 QSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITH 906
+ S W + IGS+++ K+ + N V+++ H D Y IT
Sbjct: 878 IEDPVDSSIKSW-DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITD 936
Query: 907 HQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXX 963
+ + + VI+ I+ DV K+ + + ++ K +
Sbjct: 937 KKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTK 995
Query: 964 XXXDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVI 1022
++ + Q + V N+L L++ P I ++D N F + N +SV
Sbjct: 996 SLEEINIGQELTGFVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVF 1050
Query: 1023 ATVMALPSS-STAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRL 1081
AL ++ R + AI VG + + +I + L
Sbjct: 1051 PLGSALQVKVASIDREHGFVNAIGKSHVDINMSTIK-----VGDELPGRVLKIAEKYVLL 1105
Query: 1082 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK 1141
G G IT+ +D S ++ F + KI + +++ + KK ELS++
Sbjct: 1106 DLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTVLSVDEQN--KKI---ELSLR 1159
Query: 1142 PSMLTVSEIGS 1152
P+ I S
Sbjct: 1160 PATAKTRSIKS 1170
Score = 204 (76.9 bits), Expect = 2.5e-45, Sum P(4) = 2.5e-45
Identities = 78/284 (27%), Positives = 129/284 (45%)
Query: 103 TVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXX 162
T DL F DGISG Y N L +IS + ++ +++E D+
Sbjct: 130 TKQDLCITFTDGISG----YVN---LTHISE--EFTSILEDLDE-DMDSDTDAADEKKSK 179
Query: 163 XXXXXXXILDNEIEA-NEDNLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWXX 215
D+E E ++ N LP + FH+GQ + C V++ L+ K+ K++I
Sbjct: 180 VEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELT 239
Query: 216 XXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK 275
+ V+ + A VKSIEDHG L GLP FTGF+ + + +
Sbjct: 240 IEPSSVNIYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--L 296
Query: 276 PGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
PG + G + + DR+ +V + D +K +T+ SID ++PG +V +SI +
Sbjct: 297 PGAVFLGNITKKSDRS--IVVNTDFSDKKNK-ITQIS---SIDAIIPGQIVDLLCESITK 350
Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
NG+ +G V++ HL+ TF + K+ + + RI+
Sbjct: 351 NGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVIGSSIRCRII 393
Score = 203 (76.5 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 86/325 (26%), Positives = 154/325 (47%)
Query: 1186 HLKAQLFILDSAYEPSELQEFQ------RRFHIGKAVTGHVLSINKEKKLLRLVLRP-FQ 1238
H ++ +L+ + +PSEL+ + +IG+ +TG V N L L + P +
Sbjct: 970 HKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVN--NSSGNHLWLTISPVLK 1027
Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG-PHLYGRVHFT-ELKN 1296
IS +D++ DN F + V S + V + + G + G+ H +
Sbjct: 1028 ARIS--LLDLA-DNDSNFSENIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDINMST 1084
Query: 1297 ICVSDPLSGY-----DEGQFDPLSGYDEG-QFVKCKVLEISRTVRGTFHVELS--LRSSL 1348
I V D L G ++ L G F+ + + S T++ F +++ + +++
Sbjct: 1085 IKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFEDKINNVIPTTV 1144
Query: 1349 DGMSSTNSS-DLSTDVDTPG-KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
+ N +LS T + ++ EDL IV G VKNV KG F+ LSRK++A V
Sbjct: 1145 LSVDEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFV 1204
Query: 1407 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1466
+S LSD Y++ +K + + V G+V++ + S R+ +TL+ S+ + S++
Sbjct: 1205 PVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDS-RISLTLRESEIN-GDLKVLKTYSDI 1262
Query: 1467 HVGDIVIGQIKRVESYGLFITIENT 1491
GD+ G IK V +G+F+ ++NT
Sbjct: 1263 KAGDVFEGTIKSVTDFGVFVKLDNT 1287
Score = 173 (66.0 bits), Expect = 2.5e-45, Sum P(4) = 2.5e-45
Identities = 66/274 (24%), Positives = 120/274 (43%)
Query: 494 SDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
+D+ G ++ ++ +V S G ++ F G KA P H+S+ +V P +KFK+G+++
Sbjct: 505 NDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKG 564
Query: 552 RVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFV 603
RV+ V S+ + VT KK+LV ++L ++S+Y A + T I + +GC +
Sbjct: 565 RVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCII 624
Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
F+ G+ GF P SE+ P +GQ V +++ RRI + + + ++
Sbjct: 625 SFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQ 684
Query: 664 DXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS----KGTIPTEHLAD-HLEHATVMKSVI 718
+ +G I HL+D +E +
Sbjct: 685 QKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKL 744
Query: 719 KPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ 751
+ G E L++ D + +S K SLI A++
Sbjct: 745 RIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKK 778
Score = 167 (63.8 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 86/411 (20%), Positives = 186/411 (45%)
Query: 1085 IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM 1144
+G G I++ ++D + +IG +T +I K + + ++ +S+K S+
Sbjct: 718 VGLRGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTR-----TRVFNMSLKSSL 772
Query: 1145 LTVSEIGS-KLLFEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1202
+ ++ + L +++ D++ + Y+ + ++ L ++ + K +L S S
Sbjct: 773 IKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKG--LFVAFNGKFIGLVLPSYAVDSR 830
Query: 1203 LQEFQRRFHIGKAVTGHVLSIN-KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
+ + F+I ++VT ++L + K +K L + P K D + + I D
Sbjct: 831 DIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWD 890
Query: 1262 --IVGGRISKILSGV--GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
+G + + V L V + +L+GRV E+ + + ++ D+ Q PLS Y
Sbjct: 891 DLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFD--TYEEIT--DKKQ--PLSNY 944
Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
+ +K K++ + V+ H L + + S S +++ + H + +E+++
Sbjct: 945 KKDDVIKVKIIG-NHDVKS--HKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEIN 1001
Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG---YVESPEKEFPIGKLVAGRVL 1434
+ G+V N + ++ +S L A++ L +L+D + E+ E FP+G + +V
Sbjct: 1002 IGQELTGFVNNSSGNHLWLTISPVLKARISLLDLADNDSNFSENIESVFPLGSALQVKVA 1061
Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGL 1484
S++ V K S +IN +S + VGD + G++ ++ E Y L
Sbjct: 1062 SIDREHGFVNAIGK-------SHVDIN-MSTIKVGDELPGRVLKIAEKYVL 1104
Score = 149 (57.5 bits), Expect = 1.4e-18, Sum P(5) = 1.4e-18
Identities = 49/186 (26%), Positives = 93/186 (50%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A+A + +H D+K G +V G V V+ G V V+A P+ +S+ +K KK
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSD-SYLKEWKK 1219
Query: 543 FKVGAELVF-RVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
F + V +V+ + RI++T +++ + L +L +Y++ + G I + G
Sbjct: 1220 FYKPMQYVLGKVVTCDEDSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFG 1279
Query: 601 CFVRFYN--GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
FV+ N V G A +E+ + S+++ VG VK ++ + P ++I+LS +K
Sbjct: 1280 VFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLS--LKA 1337
Query: 659 TRVSED 664
+ S++
Sbjct: 1338 SHFSKE 1343
Score = 134 (52.2 bits), Expect = 8.0e-06, Sum P(3) = 8.0e-06
Identities = 89/347 (25%), Positives = 141/347 (40%)
Query: 264 NNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPG 322
+N +EN G LQ V SIDR V + + K V ++ I + +PG
Sbjct: 1040 SNFSENIESVFPLGSALQVKVASIDREHGFV------NAIGKSHVDINMSTIKVGDELPG 1093
Query: 323 MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ--HKKVNARILFV 380
RV I E V+L TG I N F T K + + + +L V
Sbjct: 1094 -----RVLKIAEKYVLLDLGNKVTGISFITDALNDFSLT-LKEAFEDKINNVIPTTVLSV 1147
Query: 381 DPTSRAVGLTLNPYLLHNRAPPSH--VKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPA 438
D ++ + L+L P R+ SH +K G+I D S V A
Sbjct: 1148 DEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVD---GIVKNVNDKGIFVYLSRKVE--A 1202
Query: 439 YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSD 495
+V +S +++ +++ +K YK V +++ ++ L+ S G ++ T+SD
Sbjct: 1203 FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRISL-TLRESEINGDLKVLKTYSD 1261
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP---GKKFKVGAELVFR 552
+K G V +G + +V FG V+ V + L H++E KP F VG R
Sbjct: 1262 IKAGDVFEGTIKSVTDFGVFVKLDNTVN-VTGLAHITEIADKKPEDLSALFGVGD----R 1316
Query: 553 VLGVKSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEK 598
V + K T KK + S K + S AE T + ++EK
Sbjct: 1317 VKAIVLK--TNPEKKQISLSLKASHFSKEAELASTTTTTTTVDQLEK 1361
Score = 124 (48.7 bits), Expect = 1.9e-21, Sum P(4) = 1.9e-21
Identities = 40/138 (28%), Positives = 66/138 (47%)
Query: 699 IPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
+P L+D + K KP Y +++ D E S + L+ + S IN ++ S
Sbjct: 1204 VPVSKLSD--SYLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEINGDLKVLKTYS 1260
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
I V G + ++ + G FV+ +TG A ++ D + DLS + VG V++
Sbjct: 1261 DIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAI 1320
Query: 816 ILDVNSETGRITLSLKQS 833
+L N E +I+LSLK S
Sbjct: 1321 VLKTNPEKKQISLSLKAS 1338
Score = 103 (41.3 bits), Expect = 4.5e-29, Sum P(3) = 4.5e-29
Identities = 55/234 (23%), Positives = 105/234 (44%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
VG + + +I + L G G IT+ +D S ++ F + KI + ++
Sbjct: 1087 VGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTVL 1145
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
+ + KK ELS++P+ I S E D+ G+ V G V V+++ +
Sbjct: 1146 SVDEQN--KKI---ELSLRPATAKTRSIKS----HE-DLKQGEIVDGIVKNVNDKGIFVY 1195
Query: 1183 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1242
+SR K + F+ S S L+E+++ + + V G V++ +++ ++ L LR +
Sbjct: 1196 LSR--KVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRI-SLTLRESEINGD 1252
Query: 1243 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTEL 1294
K + +D I GD+ G I + G+ V++ ++ G H TE+
Sbjct: 1253 LKVLKTYSD-----IKAGDVFEGTIKSVTDF--GVFVKLDNTVNVTGLAHITEI 1299
Score = 102 (41.0 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 44/172 (25%), Positives = 75/172 (43%)
Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
PL D P + G VK +V+ ++ RG HV +L+ SL + N L +
Sbjct: 541 PLHISDTRLVYPERKFKIGSKVKGRVISVNS--RGNVHV--TLKKSLVNIED-NELPLVS 595
Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
+ EK E +Q + N GC I L + S +S+ +V+ PE+
Sbjct: 596 TYENAKNIKEKNEKTLAT--IQVFKPN----GCIISFFGGLSGFLPNSEISEVFVKRPEE 649
Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
+G+ V ++L V+ +R+ T K S+ + A Q + + N+ G +I
Sbjct: 650 HLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKD--TIENIVPGRTII 699
Score = 100 (40.3 bits), Expect = 8.6e-33, Sum P(4) = 8.6e-33
Identities = 46/185 (24%), Positives = 88/185 (47%)
Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1149
RI + ++ D+ SN EN+ S F +G + ++ + D + F V+
Sbjct: 1029 RISLLDLADNDSNFSENIESVFPLGSALQVKVASI----DREHGF------------VNA 1072
Query: 1150 IG-SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS-ELQE-F 1206
IG S + + +G + G V K+ ++ LL + + FI D+ + S L+E F
Sbjct: 1073 IGKSHVDINMSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAF 1132
Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFIHEGDIVGG 1265
+ + I + VLS++++ K + L LRP + KT I S+++++ +G+IV G
Sbjct: 1133 EDK--INNVIPTTVLSVDEQNKKIELSLRP----ATAKTRSIKSHEDLK----QGEIVDG 1182
Query: 1266 RISKI 1270
+ +
Sbjct: 1183 IVKNV 1187
Score = 91 (37.1 bits), Expect = 7.8e-28, Sum P(3) = 7.8e-28
Identities = 39/174 (22%), Positives = 75/174 (43%)
Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
K L I + G ++ R+ + MS +S +T + ++DL+ ++ + Y
Sbjct: 742 KKLRIGTELTGLV-IDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAY 800
Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
+K+++ KG F+ + K VL S D K F I + V +L + +++ +
Sbjct: 801 IKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLL 860
Query: 1446 TLKT-----------SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
+LK S+ S I + +L +G IV +IK V+ L + +
Sbjct: 861 SLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKKNQLNVIL 914
Score = 89 (36.4 bits), Expect = 2.5e-45, Sum P(4) = 2.5e-45
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL--LSNLSDGYVESPEKEFPI 1425
K L+ D+ + +G +K+VT G F+ L ++ L ++ ++D E F +
Sbjct: 1254 KVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGV 1313
Query: 1426 GKLVAGRVLSVEPLSKRVEVTLKTS 1450
G V VL P K++ ++LK S
Sbjct: 1314 GDRVKAIVLKTNPEKKQISLSLKAS 1338
Score = 87 (35.7 bits), Expect = 8.4e-18, Sum P(4) = 8.4e-18
Identities = 46/240 (19%), Positives = 103/240 (42%)
Query: 432 TPVSTPAYVTISDVAEEEVR---KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
+PV A +++ D+A+ + +E + GS ++V++ G I K+
Sbjct: 1023 SPV-LKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN 1081
Query: 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEI-VKPGKKFKVG 546
+ S +K G + G+V+ + ++ V + + +++F + +K + K+
Sbjct: 1082 M----STIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFEDKIN 1137
Query: 547 AELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
+ VL V ++K+I ++ + K++ + S+ + I G + + G FV
Sbjct: 1138 NVIPTTVLSVDEQNKKIELSLRPATAKTRS--IKSHEDLKQGEIVDGIVKNVNDKGIFVY 1195
Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
V+ F P S+L E Y Q V ++++ SR +S ++ + ++ D
Sbjct: 1196 LSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR---ISLTLRESEINGD 1252
Score = 86 (35.3 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 45/209 (21%), Positives = 86/209 (41%)
Query: 371 KKVNARILFVDPTSRAVGLTLNP-YLLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXI 429
+ +++R+L P L+ +P YL + + +G++ +
Sbjct: 472 ENLSSRVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIF 531
Query: 430 PST-PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA-FE 487
S P + ISD + E+K+K GS V+ R++ + + K+ E
Sbjct: 532 NGQFKASVPP-LHISDT---RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587
Query: 488 G----LVFTHSDVKPGMVVKGKVIA-VDSF---GAIVQFPGGVKALCPLPHMSEFEIVKP 539
LV T+ + K K +A + F G I+ F GG+ P +SE + +P
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647
Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHK 566
+ ++G ++ ++L V + +RI T K
Sbjct: 648 EEHLRLGQTVIVKLLDVDADRRRIIATCK 676
Score = 85 (35.0 bits), Expect = 3.0e-31, Sum P(4) = 3.0e-31
Identities = 27/107 (25%), Positives = 51/107 (47%)
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
+L +D ++ + LS + + + + + S + +V G V N+ + G FV ++
Sbjct: 1144 VLSVDEQNKKIELSLRPATAKT-RSIKSHED-LKQGEIVDGIVKNVNDKGIFVYLSRKVE 1201
Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
F P SK D + K Y Q V ++ + E RI+L+L++S
Sbjct: 1202 AFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRES 1247
Score = 79 (32.9 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 29/102 (28%), Positives = 43/102 (42%)
Query: 54 FPRGGGHSLTQRERDEIHAEV--DAEF--EAVERGLHXXXXXXXXXTERKANETVDDLGS 109
FPRGG +LT E ++ E D F E+V+ T +K+ + S
Sbjct: 38 FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97
Query: 110 LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVI 151
D L + N TLKN G L G ++ + ++DL I
Sbjct: 98 ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCI 136
Score = 79 (32.9 bits), Expect = 2.9e-10, Sum P(4) = 2.9e-10
Identities = 37/149 (24%), Positives = 67/149 (44%)
Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLL-QGV----VRSIDRTRK 292
AY+KSI D G + F F G + + ++ ID+ + Q V +R+ D+ +K
Sbjct: 799 AYIKSISDKGLFVAFN-GKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQK 857
Query: 293 VVYLSSDPDTVS--KCVTKDLKG---ISI---DLLVPGMMVSTRVQSILENGVMLSFLTY 344
+ P K V +++ SI D L G +V +++S+ +N + +
Sbjct: 858 FLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKKNQLNVILAAN 917
Query: 345 FTGTVDIFHLQNTFPT-TNWKNDYNQHKK 372
G VDI + +T+ T+ K + +KK
Sbjct: 918 LHGRVDIAEVFDTYEEITDKKQPLSNYKK 946
Score = 73 (30.8 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 850 EEKIAM-LQSSKHNGS--ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
+ +I++ L+ S+ NG LK G V EG + DFGV V + +V G
Sbjct: 1237 DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHI 1296
Query: 907 HQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
++A E G ++A +L ++ + LSLK
Sbjct: 1297 TEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLK 1336
Score = 65 (27.9 bits), Expect = 8.6e-29, Sum P(4) = 8.6e-29
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
++L + G HITE+ D K E+L + F +G V A I+ K+N P+ K+ L
Sbjct: 1282 VKLDNTVNVTGLAHITEIADKKP---EDLSALFGVGDRVKA-IVLKTN-PEKKQI---SL 1333
Query: 1139 SIKPS 1143
S+K S
Sbjct: 1334 SLKAS 1338
Score = 63 (27.2 bits), Expect = 5.5e-34, Sum P(4) = 5.5e-34
Identities = 40/172 (23%), Positives = 74/172 (43%)
Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHI-----HPNSVVHGYV---CNIIE---TGCFV 779
+N SS +L YS ++ QL +D ++ N + G + C I +G +
Sbjct: 472 ENLSSRVL---GYSPVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIEL 528
Query: 780 R-FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
+ F G+ P D + + + +G V+ ++ VNS G + ++LK+S +
Sbjct: 529 KIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSR-GNVHVTLKKSLVNIE 587
Query: 839 D-----ASFMQEHFLLEEK----IAMLQSSKHNGSELKW---VEGFIIGSVI 878
D S + ++EK +A +Q K NG + + + GF+ S I
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEI 639
Score = 54 (24.1 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 1063 VGSLVQA-EITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
+G L+ + EIT + + LK G F + ++D + E FKIG V R
Sbjct: 509 IGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPER---KFKIGSKVKGR 565
Query: 1121 IIAKSNKPD----MKKSFL 1135
+I+ +++ + +KKS +
Sbjct: 566 VISVNSRGNVHVTLKKSLV 584
Score = 52 (23.4 bits), Expect = 3.5e-15, Sum P(3) = 3.5e-15
Identities = 29/132 (21%), Positives = 59/132 (44%)
Query: 1096 VNDDK-SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL 1154
++DD+ V + + + +++R++ S D +++LS P L + + +
Sbjct: 452 LDDDRLGKVHSSRVGEIENSENLSSRVLGYSPVDD-----IYQLSTDPKYLKLKYLRTN- 505
Query: 1155 LFEECDVSIGQRVTGY-VYKVDNEWALLTI-SRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
D+ IG+ + + V + L I + KA + L + + L +R+F I
Sbjct: 506 -----DIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHIS--DTRLVYPERKFKI 558
Query: 1213 GKAVTGHVLSIN 1224
G V G V+S+N
Sbjct: 559 GSKVKGRVISVN 570
Score = 51 (23.0 bits), Expect = 2.3e-27, Sum P(4) = 2.3e-27
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 1069 AEITEI---KPLELRLKFGIGFHGRIHITEVNDDKSNV 1103
A ITEI KP +L FG+G + + + N +K +
Sbjct: 1294 AHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQI 1331
Score = 51 (23.0 bits), Expect = 5.5e-20, Sum P(4) = 5.5e-20
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 747 NSAQQLPS-DASHIHPNSVVHGYVC-NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
N Q+ S DA I P +V +C +I + G + G ++G S DL
Sbjct: 324 NKITQISSIDA--IIPGQIVD-LLCESITKNGIAGKVFGLVSGVVNVSHLRTFSEEDLKH 380
Query: 805 TYYVGQSVRSNIL 817
+ +G S+R I+
Sbjct: 381 KFVIGSSIRCRII 393
Score = 50 (22.7 bits), Expect = 1.2e-21, Sum P(5) = 1.2e-21
Identities = 31/157 (19%), Positives = 59/157 (37%)
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAI--VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
++ D+ ++ V +++ GA V PG + FE + PG F +G
Sbjct: 247 IYADEDLVKSTSIQCAVKSIEDHGATLDVGLPGFTGFIAK-KDFGNFEKLLPGAVF-LG- 303
Query: 548 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
+ + I V + K+K+ +SS I I K+G + +
Sbjct: 304 ----NITKKSDRSIVVNTDFSDKKNKITQISSIDAIIPGQIVDLLCESITKNGIAGKVFG 359
Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
V G S L + + +G ++CRI++ +
Sbjct: 360 LVSGVVNVSHLRTFSEEDLKHKFVIGSSIRCRIIACL 396
Score = 49 (22.3 bits), Expect = 3.7e-27, Sum P(4) = 3.7e-27
Identities = 21/93 (22%), Positives = 35/93 (37%)
Query: 1145 LTVSEIGS--KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1202
L SEI K+L D+ G G + V + + + + + +
Sbjct: 1244 LRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKK 1303
Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
++ F +G V VL N EKK + L L+
Sbjct: 1304 PEDLSALFGVGDRVKAIVLKTNPEKKQISLSLK 1336
Score = 48 (22.0 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
Identities = 52/225 (23%), Positives = 94/225 (41%)
Query: 1280 QIGPHLYGRVHFTELK-NICVS--DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
+IG + GRV + N+ V+ L ++ + +S Y+ + +K K + T++
Sbjct: 557 KIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQ- 615
Query: 1337 TFHVELSLRSSLDGMSS--TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
F + S G+S NS V P +HL L +IV+ + +V +
Sbjct: 616 VFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLR----LGQTVIVK--LLDVDAD-- 667
Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
R++ A +SN ++ +++ I +V GR + V V KT DS
Sbjct: 668 ----RRRIIATCKVSN-----EQAAQQKDTIENIVPGRTIIT------VHVIEKTKDSVI 712
Query: 1455 ASQSEINNLSNLHVGDIVIGQIK--RVESYGLFITIENTNLVRNK 1497
++ ++VG + +I+ R + L I E T LV +K
Sbjct: 713 VEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDK 757
Score = 46 (21.3 bits), Expect = 3.7e-17, Sum P(5) = 3.7e-17
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
+K G + G++ A+ + F G+ L H+SE
Sbjct: 116 LKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISE 153
Score = 43 (20.2 bits), Expect = 6.3e-32, Sum P(4) = 6.3e-32
Identities = 25/123 (20%), Positives = 49/123 (39%)
Query: 476 LATGILKASAFEGLVFTHSDVKP---GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
L + ++K + E L T+ DVK + + + ++ G V F G L +
Sbjct: 768 LKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAV 827
Query: 533 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS-KLAILSSYAEATDRLIT 589
+ + K F + + +L K+++ ++ K VK K + S+ + D I
Sbjct: 828 DSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIK 887
Query: 590 HGW 592
W
Sbjct: 888 -SW 889
Score = 41 (19.5 bits), Expect = 2.5e-26, Sum P(4) = 2.5e-26
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 921 QAAILDVAKAERLVDLSLKTVFIDRFRE 948
Q + ++ KA L + +LKT+ FRE
Sbjct: 1485 QLQLSEIEKARELAERALKTI---NFRE 1509
Score = 41 (19.5 bits), Expect = 1.9e-18, Sum P(5) = 1.9e-18
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
+ DL T+ G S N+ ++ E I L + S TDA+
Sbjct: 131 KQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173
Score = 40 (19.1 bits), Expect = 1.9e-18, Sum P(5) = 1.9e-18
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
E + G+V G + + +D +VV+ + SD IT A + G ++ + K
Sbjct: 293 EKLLPGAVFLGNITKKSDRSIVVN-TDFSDKKNKITQISSIDAIIP-GQIVDLLCESITK 350
Score = 39 (18.8 bits), Expect = 1.6e-31, Sum P(4) = 1.6e-31
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNR 399
K ++ + LFV + +GL L Y + +R
Sbjct: 802 KSISDKGLFVAFNGKFIGLVLPSYAVDSR 830
Score = 39 (18.8 bits), Expect = 1.5e-26, Sum P(4) = 1.5e-26
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 875 GSVIEGKVHESNDFGVVV 892
G +++G V ND G+ V
Sbjct: 1177 GEIVDGIVKNVNDKGIFV 1194
Score = 39 (18.8 bits), Expect = 1.4e-18, Sum P(5) = 1.4e-18
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 442 ISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEG-----LATGILKASAFEGLVFTHS 494
+ D EE K + YK+ ++V+I+G ++ + I KAS E L S
Sbjct: 927 VFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLPITHKISKASVLE-LSMKPS 985
Query: 495 DVK 497
++K
Sbjct: 986 ELK 988
Score = 38 (18.4 bits), Expect = 1.9e-20, Sum P(5) = 1.9e-20
Identities = 27/149 (18%), Positives = 48/149 (32%)
Query: 593 ITKIEKHGCFVRF-YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
+ IE HG + G GF + + G P +++ +G + K S + +N
Sbjct: 263 VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKLLPGAVF-LGNITKKSDRSIV-----VN 316
Query: 652 LSFMMKPTRVSE-DXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEH 710
F K ++++ G G + HL E
Sbjct: 317 TDFSDKKNKITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLRTFSEE 376
Query: 711 ATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
K VI + L+N+S + +L
Sbjct: 377 DLKHKFVIGSSIRCRIIACLENKSGDKVL 405
Score = 37 (18.1 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRIL 468
V +S + L+ K+ GS +R RI+
Sbjct: 365 VNVSHLRTFSEEDLKHKFVIGSSIRCRII 393
>DICTYBASE|DDB_G0286941 [details] [associations]
symbol:DDB_G0286941 species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
dictyBase:DDB_G0286941 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000092
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 RefSeq:XP_637477.1
ProteinModelPortal:Q54L26 EnsemblProtists:DDB0187202 GeneID:8625876
KEGG:ddi:DDB_G0286941 InParanoid:Q54L26 OMA:IEPLEMI Uniprot:Q54L26
Length = 804
Score = 430 (156.4 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 128/482 (26%), Positives = 220/482 (45%)
Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIED 245
+F+ GQ++ C ++ L D G + +T E M + ++SI+D
Sbjct: 234 MFYKGQMLKCAIVGLTDHHTIEG---LHCTLRPELVNVGSSIDTFSEDMTIHGCIESIQD 290
Query: 246 HGYILHFGLPSFTGFLPRNNLA----ENSGIDVKP---GLLLQGVVRSIDRTRKVVYLSS 298
GYI+ FG + GFL +N + S D G ++ +++SID++ K L+
Sbjct: 291 KGYIVSFGSKDYNGFLEFSNTCYYYPDQSSDDQNQLYIGQPIESLIQSIDKSTKTFKLTI 350
Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
VS+ K+ + I+++ + GM+V T+V +L NG+ L FL +F G + I H QN
Sbjct: 351 SHPLVSRSTIKNSETITMESIKAGMLVETKVLRVLSNGLHLGFLDFFAGDIFILHSQNPI 410
Query: 359 PTTNWKNDYNQHKKVNARILFVDPTSRAVGL-TLN------PYLLHNRAPPSHVKVGDIY 411
T Y +++ V ARILFVD + +GL TL PY P +V+ G +
Sbjct: 411 ET------YKENQGVKARILFVDQVHKRIGLSTLGHVLGFKPYPFGTTKPGQYVESGKLT 464
Query: 412 DQSKXXXXXXXXXXXXXIPSTPVSTP----AYVTISDVAE--EEVRKLEKKYKEGSCV-- 463
+ + S P+ P Y+ I ++ ++ K ++K+ +
Sbjct: 465 IERIEPLEMIVTTESTVVQSNPMKAPLLLRGYIHIEELESGVNDLTKASNQFKKTEPLEK 524
Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
R R+ HL+G+ T + E ++++D+ GMVV+G + V + V+ +
Sbjct: 525 RCRVKHLDHLDGMVTYTARTRELEKKFYSYNDLSCGMVVQGVIRYVRADSLEVELATSIH 584
Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYA 581
+ HM++ I P + FKVGA + R++ V+ KR+ +T KK+L+ S+ I++
Sbjct: 585 GVVARHHMADTNITDPLEFFKVGATVKVRIINVEPDKKRLQLTLKKSLIYSEYPIITDKN 644
Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
I+HG ITK + FV FYN G L + VG+ V + +
Sbjct: 645 TTPIGTISHGIITKTTRFLVFVSFYNNSFGVVEAQNLSNSKIESVQKQFPVGRTVLAKTL 704
Query: 642 SS 643
S
Sbjct: 705 FS 706
Score = 125 (49.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 33/125 (26%), Positives = 62/125 (49%)
Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
K DLS M+VQG ++ V + + L+ + V +++D + P + F +G
Sbjct: 549 KKFYSYNDLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGA 608
Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
V R+++VEP KR+++TLK S + I + + +G I G I + + +F++
Sbjct: 609 TVKVRIINVEPDKKRLQLTLKKS-LIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVS 667
Query: 1488 IENTN 1492
N +
Sbjct: 668 FYNNS 672
Score = 72 (30.4 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 55/268 (20%), Positives = 111/268 (41%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD-----KSNVV---ENLFS-NFKIG 1114
G +V A ++ +++ + G G + E++D K + EN S NF+
Sbjct: 165 GMVVLATFEQVTEMDITISLPFGLKGYVKFNEISDSFTEWMKETLKREDENEKSTNFRKM 224
Query: 1115 QTVTARIIAKSNKPDMKKSFLWELS----IKPSMLTVS----EIGSKL-LFEECDVSIGQ 1165
+ ++ ++ K M K + L+ I+ T+ +GS + F E D++I
Sbjct: 225 KIISDQVRKMFYKGQMLKCAIVGLTDHHTIEGLHCTLRPELVNVGSSIDTFSE-DMTIH- 282
Query: 1166 RVTGYVYKVDNEWALLTI-SRHLKAQLFILDSAYE-PSELQEFQRRFHIGKAVTGHVLSI 1223
G + + ++ +++ S+ L ++ Y P + + Q + +IG+ + + SI
Sbjct: 283 ---GCIESIQDKGYIVSFGSKDYNGFLEFSNTCYYYPDQSSDDQNQLYIGQPIESLIQSI 339
Query: 1224 NKEKKLLRLVL-RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
+K K +L + P +S T+ S I G +V ++ ++LS GL +
Sbjct: 340 DKSTKTFKLTISHPL---VSRSTIKNSETITMESIKAGMLVETKVLRVLSN--GLHLGFL 394
Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
G + +N P+ Y E Q
Sbjct: 395 DFFAGDIFILHSQN-----PIETYKENQ 417
>WB|WBGene00002850 [details] [associations]
symbol:let-716 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0040010 GO:GO:0008406 GO:GO:0002119
GO:GO:0003723 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007276
InterPro:IPR022967 SMART:SM00316 EMBL:FO080367 eggNOG:COG0539
KO:K14792 GeneTree:ENSGT00390000012228 PIR:E88481
RefSeq:NP_498398.1 ProteinModelPortal:Q18038 SMR:Q18038
STRING:Q18038 PaxDb:Q18038 EnsemblMetazoa:C16A3.3 GeneID:175906
KEGG:cel:CELE_C16A3.3 CTD:175906 WormBase:C16A3.3
HOGENOM:HOG000018736 InParanoid:Q18038 OMA:NMEVAYG NextBio:890242
Uniprot:Q18038
Length = 1743
Score = 188 (71.2 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 114/534 (21%), Positives = 213/534 (39%)
Query: 134 GMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEANEDNL-LPTIFHVGQL 192
G+ +GVV+EV + +++ E+ NE+ + + F +GQ+
Sbjct: 72 GLTGFGVVSEVFDDGVLLHTAGTHTVKIHASEVSKKF--TEL-FNEEKIEIKNAFQLGQM 128
Query: 193 VSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGYILHF 252
V V+ K+ K K+ + G+VL V SIE+ G IL
Sbjct: 129 VPFRVIS---KKQGNDKGKVKGTCNPARLNKHLSPNMLAAGLVLHTAVVSIEEKGAILDV 185
Query: 253 GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 312
GL TGF+ ++ +G+ K G+ L +VR + T +VV ++S + + +T K
Sbjct: 186 GLDQITGFIEKSQFPA-AGL--KEGMPL--IVRVLSSTSRVVKVTSFVEQDNLNMTSCEK 240
Query: 313 GISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
+ ++ L+PG ++ + GV+++ G I +N P +N K
Sbjct: 241 -LQLNHLMPGTILECEPTGDAVTAGVIVNI---GNGLKGILPRRNLPPRLR-ENPEKLGK 295
Query: 372 KVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGDIYDQSKXXXXXXXXXXX 426
+ A ++F S+ + L +P + + R + +GD +
Sbjct: 296 AIRAIVMFCQQNSKILVLNAHPDIVAASRIEKRTSFEGISIGDKVKCTVIDVLPTKSMVY 355
Query: 427 XXIPSTPVSTPAYVTISDVAE-EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 485
+P+ +S E+ ++ +Y+ G+ R+ GFR+ + T +
Sbjct: 356 FALPAIDGKKSLVTAVSSRGLLEKPDQVSTEYEVGTEKLCRVTGFRYADRSITISTRKDI 415
Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--F 543
+ + D K G V+ +V V G VKA PL +S+ + K +
Sbjct: 416 LNQKITKYQDAKCGDVLDARVHHVAKSGVYFMVCNFVKAFAPLSMLSDKPLPAQKMKNIY 475
Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
KVG E+ RV + + K + VT +++++ K ++S E + I K+ G
Sbjct: 476 KVGTEVKCRVWQICDERKNLIVTCRESILGLKSPSVNSVQELEIGVTVPCVIRKVFPTGV 535
Query: 602 FVR-FYNGVQGFAPRSELGLD-PGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
+ +N + G R E + PG ++ + V V K + R +N S
Sbjct: 536 LLLGTFNNICGVL-RKESAVHLPGTPKNNDFVVANVEKIEDNRVVFVLRDVNPS 588
Score = 77 (32.2 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 46/204 (22%), Positives = 86/204 (42%)
Query: 1095 EVNDDKSNVV--ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
EVN + + ENL + K+ + K +M+++ + + K L ++ +
Sbjct: 1128 EVNPVWTGTISRENLSDDLKVTAADGGIVDLALKKGEMREAKITAVDRKNMSLKLTLDTA 1187
Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF--ILDSAYEPSELQEFQRRF 1210
+ FE IG VTG V+ V + L +S +A L + YE E + + +
Sbjct: 1188 EEAFE-----IGASVTGRVFFVSKTYIRLKLSSGQQAVLTPTAITDKYETIE-KITENQL 1241
Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRP-FQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
GK V + ++ + +VL+ F +D + D+ + EGD G +
Sbjct: 1242 TDGKLVDVVCAKLQEKPRRYFVVLKNRFNSKSTDAKRQLLLDSK--LMKEGDQYDGIVEN 1299
Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTE 1293
+ G L +++GP + GR+ E
Sbjct: 1300 --ASKGSLFIELGPGVSGRIPVNE 1321
Score = 64 (27.6 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 38/153 (24%), Positives = 67/153 (43%)
Query: 751 QLPSDASHIHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYV 808
+LP + V+ G V +I G FV +G +G K ++ + A + S+ V
Sbjct: 702 KLPKKIDELKVGKVIVGIVGQVITNVGVFVELVGG-SGLV--GKVLERKNAKNTSELLEV 758
Query: 809 GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
GQ + I +++ T + S C+ + E L + + +L+S E+KW
Sbjct: 759 GQVIVGTIESIDT-TKK---SFLIDPCTDLETG---ELMLKKYALPLLESIVE---EVKW 808
Query: 869 V---EGFII-GSVIEGKVHESNDFGVVVSFEEH 897
+ + I GS + GKV + D +V FE +
Sbjct: 809 LAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841
Score = 57 (25.1 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
Identities = 27/108 (25%), Positives = 48/108 (44%)
Query: 731 DNESSNLLLSAKY------SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL-- 782
D E+ L+L KY S++ + L +++ P S V+G V ++ V F
Sbjct: 783 DLETGELMLK-KYALPLLESIVEEVKWLAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841
Query: 783 GR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
G+ + G P K VD ++ KT + ++D+N T + L+
Sbjct: 842 GKKIAGILP--KMVDDKKTT-EKTKKKKATKSFIVVDINHSTNEVVLA 886
Score = 50 (22.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 34/140 (24%), Positives = 62/140 (44%)
Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
++LE+ + + GT +E S+D + D TD++T L+K IV+
Sbjct: 754 ELLEVGQVIVGT--IE-----SIDTTKKSFLIDPCTDLETGELMLKKYALPLLESIVEE- 805
Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
VK + + + + K++ KV L D + E GK +AG + + K E
Sbjct: 806 VKWLAEQSNYPIPGSKVNGKVT-KELDDLTLVEFEHN---GKKIAGILPKMVDDKKTTEK 861
Query: 1446 TLKTSDSRTASQSEINNLSN 1465
T K +++ +IN+ +N
Sbjct: 862 TKKKKATKSFIVVDINHSTN 881
Score = 49 (22.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 1419 PEK--EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN----LHVGDIV 1472
P+K E +GK++ G V V + V V L E N N L VG ++
Sbjct: 704 PKKIDELKVGKVIVGIVGQVIT-NVGVFVELVGGSGLVGKVLERKNAKNTSELLEVGQVI 762
Query: 1473 IGQIKRVES 1481
+G I+ +++
Sbjct: 763 VGTIESIDT 771
Score = 47 (21.6 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 61/316 (19%), Positives = 107/316 (33%)
Query: 856 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVY-GFITHHQLAG-- 911
+Q+ K S L + + IG V+ K +N + E + V+ G I+ L+
Sbjct: 1089 IQAGKVRASNLSYKSNYKIGDVV--KCFGANTMTEKQELKVEVNPVWTGTISRENLSDDL 1146
Query: 912 -ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGV 970
T G ++ A+ K E K +DR ++G
Sbjct: 1147 KVTAADGGIVDLAL---KKGEMR---EAKITAVDR-----KNMSLKLTLDTAEEAFEIGA 1195
Query: 971 HQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSD-YNT-QKFPQKQFLNGQSVIATVMA 1027
+V V V + Y+ L L ++ +++D Y T +K + Q +G+ V
Sbjct: 1196 --SVTGRVFFVSKTYIRLKLSSGQQAVLTPTAITDKYETIEKITENQLTDGKLVDVVCAK 1253
Query: 1028 LPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFGIGF 1087
L ++L + G + L ++ G G
Sbjct: 1254 LQEKPRRYFVVLKNRFNSKSTDAKRQLLLDSKLMKEGDQYDGIVENASKGSLFIELGPGV 1313
Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
GRI + E N D + N + + I K + ++K W ++KP
Sbjct: 1314 SGRIPVNEENQDLLEIGTNSVIRVTVVKVAKNEITLKLDDILIRK---W--TVKPDRKRT 1368
Query: 1148 SE----IGSKL-LFEE 1158
S + SK+ L EE
Sbjct: 1369 SSKSEGVPSKVALLEE 1384
Score = 46 (21.3 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 30/107 (28%), Positives = 45/107 (42%)
Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ----GYVKNVTSKGCFIMLSRKLDAKVLLS 1409
T +L +V+ E+LS ++ V G V KG M K+ A V
Sbjct: 1120 TEKQELKVEVNPVWTGTISRENLSDDLKVTAADGGIVDLALKKG--EMREAKITA-VDRK 1176
Query: 1410 NLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
N+S +++ E+ F IG V GRV V + + LK S + A
Sbjct: 1177 NMSLKLTLDTAEEAFEIGASVTGRVFFVS----KTYIRLKLSSGQQA 1219
Score = 39 (18.8 bits), Expect = 5.8e-11, Sum P(3) = 5.8e-11
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 628 SMYHVGQVVKC 638
S Y +G VVKC
Sbjct: 1103 SNYKIGDVVKC 1113
>FB|FBgn0039182 [details] [associations]
symbol:CG5728 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 EMBL:AE014297 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000381 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
EMBL:AY061461 RefSeq:NP_651245.1 UniGene:Dm.1316 SMR:Q9VC94
STRING:Q9VC94 EnsemblMetazoa:FBtr0084632 GeneID:42899
KEGG:dme:Dmel_CG5728 UCSC:CG5728-RA FlyBase:FBgn0039182
InParanoid:Q9VC94 OMA:NEKSFPR OrthoDB:EOG4JQ2CH GenomeRNAi:42899
NextBio:831166 Uniprot:Q9VC94
Length = 1430
Score = 232 (86.7 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 187/887 (21%), Positives = 342/887 (38%)
Query: 98 RKANETVDDLGSLFGDGISGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICX--- 153
+KA + ++L S + +G+L + A + + + M + GVV E+ L I
Sbjct: 37 KKAPKVKENLLSYETEEQNGQLEAFSAETLNMDTLQEDMLVMGVVKELTATALQIALPGR 96
Query: 154 XXXXXXXXXXXXXXXXILDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRK 211
+ + + +E + L +F +G++V ++ + K + G+
Sbjct: 97 MFARTLVADISDAYTRVAKAAMSGDTSEYHDLTELFQLGRIVYGKAIKTE--KLDTGRVS 154
Query: 212 IWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG 271
+ +++++G + + V +HGY++ G+ F+P A+
Sbjct: 155 LLLSLKPADVHGNLHHKSIKKGFIFSGAVAEALEHGYVIESGVQGLQAFVPCEKPAQKLH 214
Query: 272 IDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQ 330
+ L ++ V + T V + D + K ++D ++PG +V +V
Sbjct: 215 VGQLAFLKVKTVHHDTHQSTCTCVQVEQDQLRI-----KSQNETNLDYILPGSIVKFKVA 269
Query: 331 SILENGVMLSFLTY-FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 389
L++G+ S + F+ V+ HL N T + Y ++ NAR+L+V P ++ V L
Sbjct: 270 KHLKDGLKGSIMNESFSAYVNEHHLANALDTLD---AYELNEDYNARVLYVMPLTKLVYL 326
Query: 390 TLNPYLLHNRAPPSH----------VKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAY 439
TLN + A +KVG + +++K + +Y
Sbjct: 327 TLNLDIKTGAAVAKDQDEEEQEVEPIKVGSVVEKAKVLRLGSGGVVLL-LNKKLKGIISY 385
Query: 440 VTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
+I + K E KY + +VRILG+ +E L + +F D+
Sbjct: 386 GSIRGNFKGNYDKDEVLSKYGRKTKHKVRILGYDVIESLYYCSDDPNVVNEKLFCLEDIN 445
Query: 498 PGMVVKGKVIAVDSF--GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
G +V K+ D G V+ G V + + +F + P ++ VG L RVL
Sbjct: 446 AGDLVTAKIFKKDDKIKGWSVRI-GKVNGI-----LEQFYLA-PNVRYDVGQSLKCRVLE 498
Query: 556 VKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
V ++R V+++ + + IL+ YA A + G + + E V+F NG++G
Sbjct: 499 VNAERKICYVSNRAEYLGKGIKILTDYASAHVGNVYMGTVVRCEDTYVLVKFGNGIKGVL 558
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL---SFMMK---PTRVSEDXXX 667
R L E SS + GQ K RI++ + L F + P ++
Sbjct: 559 HRQNLK-----ENSSFFE-GQTTKFRILTRNKDQITLTLPEDKFQLGEICPVEITNALDA 612
Query: 668 XXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 727
+ + G IP L+DHLE V G D
Sbjct: 613 GLEVKITFAAEDDEEDEDGNPKLEEFV--GLIPLRLLSDHLELLHAQMRVHPAGSYTDAA 670
Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
++ N S L Y + QL D + ++ YV + T V + +
Sbjct: 671 CIMQNIFS--LRDVPYF----SGQLTKDWQSVQVGDIIRSYVKHA--TDQVVDLMVCVRN 722
Query: 788 F-APRSKAVDGQRADLSKTYYVG----QSVRSNILDVNSETGRITLSLKQSCCSS---TD 839
+ P V R + K V Q + +L ET +T+S K + S +D
Sbjct: 723 YNKPVKVHVKMLRLNAVKNAPVELVPEQLLWVKVLSKEVETKTLTVSAKLTDVWSGDLSD 782
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSE--LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
+ + E +L E +A +++ S K+ G I V +G +ND+ V + E +
Sbjct: 783 TAKLVEGYLNE--VAQIKAGLEEASAPISKYSVGEKINVVFKGIDATTNDW--VYTVEGN 838
Query: 898 SDVYGFITHHQLAGATV-ESGSVIQAAILDVAKAERLVDLSLKTVFI 943
V + + A E GS +A IL + + ++ +S K + I
Sbjct: 839 GKVSALLLSSLVGTAKAPEMGSKHEAVILWIEYSSDVLLISNKKLDI 885
Score = 38 (18.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 7/52 (13%), Positives = 27/52 (51%)
Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
++ L + + S ++ ++ + N+++ + D+V KR++ + +++
Sbjct: 1311 ALRALPNQEHIPCIVSFAKLYAKHDNNDMAQTLLDDVVTSYPKRIDIWSVYV 1362
Score = 37 (18.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 1100 KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSF 1134
K+ VVE + + K Q +T I+ + K + K F
Sbjct: 1035 KAEVVEKITNGQKKTQPLTNGIVKEKPKQNGKLFF 1069
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 190 (71.9 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 84/344 (24%), Positives = 140/344 (40%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+++ G VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 188 NLQEGQAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246
Query: 555 GVKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
+R V+ K L + L I Y E T +T G +T + +GCFV GV+G
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENTK--LT-GRVTNLTDYGCFVEIEEGVEGL 303
Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXX 671
SE+ + PS + ++G V+ ++ RRI+L T +D
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNK 363
Query: 672 XXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
G G + HL+D + T +V K G E +++
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNGTGEDAVSEYKKGDEIHAVVL 420
Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
+D E + L K + + +D ++VHG V + G V + G+
Sbjct: 421 SVDPERERISLGVKQTEDDPFNAYLADKKK---GTIVHGTVSAVDAKGVTVELADTVEGY 477
Query: 789 APRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
R + +R D S Y VG ++ + + V+ + I+LS+K
Sbjct: 478 I-RVADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIK 520
Score = 133 (51.9 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 79/361 (21%), Positives = 152/361 (42%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE + T + +PG +V+G V+A+++ +V G+K+ P+P +F+ + +
Sbjct: 6 ADLFEQSLQT-LEFRPGSIVRGTVVAIEN--GMVLVDAGLKSESPIP-AEQFKNAQGVLE 61
Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
VG E+ + V+ ++ +K +L E + +I G I K G
Sbjct: 62 IAVGDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI--GIINGKVKGG 119
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMM 656
V NG++ F P S + + P + + + + +V+K + +++ SRR + +
Sbjct: 120 FTVEL-NGIRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRR---AVIE 175
Query: 657 KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATVMK 715
+ D + G G + +A ++H +
Sbjct: 176 SESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPS--- 232
Query: 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNII 773
++ G E + ++L D E + + L K + L + S +P N+ + G V N+
Sbjct: 233 EIVNVGDEINVKVLKYDRERTRVSLGLKQ--LGEDPWL--EISKRYPENTKLTGRVTNLT 288
Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ GCFV + G S+ +D ++ SK +G V +LD++ E RI+L LK
Sbjct: 289 DYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLK 347
Query: 832 Q 832
Q
Sbjct: 348 Q 348
Score = 123 (48.4 bits), Expect = 0.00095, P = 0.00095
Identities = 42/165 (25%), Positives = 79/165 (47%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK----KFKVGAELVFRVL 554
G V GK+ ++ FG + GG+ L H+S+ G+ ++K G E+ VL
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNGTGEDAVSEYKKGDEIHAVVL 420
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
V + +RI++ K+T A L+ + T I HG ++ ++ G V + V+G+
Sbjct: 421 SVDPERERISLGVKQTEDDPFNAYLADKKKGT---IVHGTVSAVDAKGVTVELADTVEGY 477
Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
+++ + + S++Y VG ++ + M +R I+LS K
Sbjct: 478 IRVADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKAK 522
Score = 107 (42.7 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 32/111 (28%), Positives = 58/111 (52%)
Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
V G +K++T G FI L +D V LS++S +G E E+ G + VLSV+P
Sbjct: 367 VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPER 426
Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
+R+ + +K ++ + L++ G IV G + V++ G+ + + +T
Sbjct: 427 ERISLGVKQTEDDPFNAY----LADKKKGTIVHGTVSAVDAKGVTVELADT 473
Score = 103 (41.3 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 68/342 (19%), Positives = 129/342 (37%)
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
++ GKV G V+ G++A P + + V+ + EL F+V+ + KR
Sbjct: 111 IINGKVKG----GFTVEL-NGIRAFLP-GSLVDVRPVRDTAHLEY-KELEFKVIKLDQKR 163
Query: 561 ITVT-HKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V ++ +++S+ A+L + E G + + +G FV GV G
Sbjct: 164 NNVVVSRRAVIESESSAERDALLENLQEGQ---AVKGIVKNLTDYGAFVDL-GGVDGLLH 219
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXXX 673
+++ PS + +VG + +++ R++L + E
Sbjct: 220 ITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTK 279
Query: 674 XXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDN 732
I +G +G + + D V+ G E + L++ +D
Sbjct: 280 LTGRVTNLTDYGCFVEIEEGV-EGLVHVSEM-DWTNKNIHPSKVVNLGDEVEVLVLDIDE 337
Query: 733 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
E + L K N A+ + V G + +I + G F+ G + G S
Sbjct: 338 ERRRISLGLKQCKTNPWDDF---ATRYNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLS 394
Query: 793 K-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
+ +G D Y G + + +L V+ E RI+L +KQ+
Sbjct: 395 DISWNGTGEDAVSEYKKGDEIHAVVLSVDPERERISLGVKQT 436
Score = 80 (33.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 17/88 (19%), Positives = 43/88 (48%)
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
+ D IV G V V +KG + L+ ++ + ++++S +E + +G + +
Sbjct: 445 LADKKKGTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVGDAIEAK 504
Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEI 1460
+ V+ ++ + +++K D A + E+
Sbjct: 505 FMGVDRKNRSISLSIKAKDE--AEEKEV 530
Score = 71 (30.1 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 34/186 (18%), Positives = 83/186 (44%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
Y+ G V +I I + + G G +H+++++ + + E+ S +K G + A
Sbjct: 361 YNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTG--EDAVSEYKKGDEIHAV 418
Query: 1121 IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
++ S P+ ++ L +K T + + L D G V G V VD +
Sbjct: 419 VL--SVDPERERI---SLGVKQ---TEDDPFNAYL---ADKKKGTIVHGTVSAVDAKGVT 467
Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
+ ++ ++ + + D + E +++ + +G A+ + ++++ + + L ++ +D
Sbjct: 468 VELADTVEGYIRVADISRE--RIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKA-KDE 524
Query: 1241 ISDKTV 1246
+K V
Sbjct: 525 AEEKEV 530
Score = 58 (25.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVY---GFITHHQLAGA-TVES-GSVIQAAILDVAK 929
G+++ G V + GV V + + Y I+ ++ A TV S G I+A + V +
Sbjct: 451 GTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVGDAIEAKFMGVDR 510
Query: 930 AERLVDLSLK 939
R + LS+K
Sbjct: 511 KNRSISLSIK 520
Score = 51 (23.0 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 875 GSVIEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDV 927
G + GK+ DFG+ + + H SD+ T A + + G I A +L V
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGED-AVSEYKKGDEIHAVVLSV 422
Query: 928 AKAERLVDLSLKTVFIDRF 946
+ L +K D F
Sbjct: 423 DPERERISLGVKQTEDDPF 441
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 142 (55.0 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+++ G +KG + + +GA V GGV L + M+ + P VG E+ +VL
Sbjct: 184 ELQEGQEIKGVIKNITDYGAFVDL-GGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVL 242
Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
KR+++ K+ L A + R+ G +T I +GCFV+ GV+G
Sbjct: 243 KFDRDKKRVSLGMKQ-LADDPWAKIERRYPVNSRVF--GKVTNITDYGCFVKLEEGVEGL 299
Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
SEL + PS + G+ V+ ++ RRI+L
Sbjct: 300 VHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISL 340
Score = 116 (45.9 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 71/344 (20%), Positives = 133/344 (38%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
K G +VKG +I G V V+A P + + PG + E+ F+++ +
Sbjct: 99 KAGEMVKGVIIERVKGGFTVDL-NSVRAFLPGSLVDVKPVRDPG--YLEDKEIDFKIIKM 155
Query: 557 KSKRITVT-HKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
+R V ++ +++++ + + E + G I I +G FV GV G
Sbjct: 156 DQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDL-GGVDGLL 214
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXX 672
+++ PS + +VG V +++ +R++L + ++
Sbjct: 215 HITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNS 274
Query: 673 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
+ +G +G + T L D V++ G E + +L +D
Sbjct: 275 RVFGKVTNITDYGCFVKLEEGV-EGLVHTSEL-DWTNKNIHPSKVVQSGEEVEVMVLEID 332
Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
E + L K N Q+ H + + G V +I + G F+ G + G
Sbjct: 333 EERRRISLGIKQCKRNPWQEFAE--KH-EKDEKITGKVRSITDFGMFIGLEGDIDGLVHL 389
Query: 792 SK---AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
S G+ A + Y G V++ IL ++ E RI+L +KQ
Sbjct: 390 SDISWTESGEEA--IRNYKKGDEVQAVILGIDPERERISLGIKQ 431
Score = 113 (44.8 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 30/128 (23%), Positives = 61/128 (47%)
Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
+ +T + ++E+L ++G +KN+T G F+ L +D + +++++ G V+ P
Sbjct: 171 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGG-VDGLLHITDMAWGRVKHPSD 229
Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1481
+G V +VL + KRV + +K ++ E V V G++ +
Sbjct: 230 LLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIE----RRYPVNSRVFGKVTNITD 285
Query: 1482 YGLFITIE 1489
YG F+ +E
Sbjct: 286 YGCFVKLE 293
Score = 103 (41.3 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDV 819
NS V G V NI + GCFV+ + G S+ +D ++ SK G+ V +L++
Sbjct: 273 NSRVFGKVTNITDYGCFVKLEEGVEGLVHTSE-LDWTNKNIHPSKVVQSGEEVEVMVLEI 331
Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
+ E RI+L +KQ C + F ++H +EKI
Sbjct: 332 DEERRRISLGIKQ-CKRNPWQEFAEKHEK-DEKI 363
Score = 81 (33.6 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 25/112 (22%), Positives = 60/112 (53%)
Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
+E +E + ++Q VK V SK + L+ ++ ++ L++ + V+ +E +G V
Sbjct: 438 MEFVESYDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDRVKDLTQELNVGDEV 497
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSR----TASQSEINNLSNLHVGDIVIGQIK 1477
A ++++V+ ++ + V+ K + R T + S++ + L GD++ +I+
Sbjct: 498 AVKIVNVDRKNRLINVSHKAVEGRSEKGTRTVSDVPTKTTL--GDLLKEKIQ 547
Score = 76 (31.8 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEP 1438
+ G V+++T G FI L +D V LS++S + ES E + + G V +L ++P
Sbjct: 363 ITGKVRSITDFGMFIGLEGDIDGLVHLSDIS--WTESGEEAIRNYKKGDEVQAVILGIDP 420
Query: 1439 LSKRVEVTLK 1448
+R+ + +K
Sbjct: 421 ERERISLGIK 430
Score = 71 (30.1 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 42/148 (28%), Positives = 65/148 (43%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE + T +D++PG +VK V+ V IV G+K+ +P SEF +P
Sbjct: 6 AELFEKSL-TETDLRPGALVKATVVEVRPDRVIVN--AGLKSEGIIP-ASEFRNEEP--- 58
Query: 543 FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK---IEK- 598
VG E F V+ T L + K +++E ++ G + K IE+
Sbjct: 59 -HVGDEF-FVVIEASDNGFGETR---LSREKARRAKAWSEL-EKAYKAGEMVKGVIIERV 112
Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEP 626
G F N V+ F P S + + P +P
Sbjct: 113 KGGFTVDLNSVRAFLPGSLVDVKPVRDP 140
Score = 60 (26.2 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 14/67 (20%), Positives = 33/67 (49%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
YD +++QA++ E++ + L+ G++ + + D+ V++L +G V +
Sbjct: 444 YDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDR---VKDLTQELNVGDEVAVK 500
Query: 1121 IIAKSNK 1127
I+ K
Sbjct: 501 IVNVDRK 507
Score = 59 (25.8 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 878 IEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDVAKA 930
I GKV DFG+ + E H SD+ + + A + G +QA IL +
Sbjct: 363 ITGKVRSITDFGMFIGLEGDIDGLVHLSDI-SWTESGEEAIRNYKKGDEVQAVILGIDPE 421
Query: 931 ERLVDLSLKTVFIDRFRE 948
+ L +K + D F E
Sbjct: 422 RERISLGIKQLEGDPFME 439
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-----THHQLAGATVES--GS 918
+++VE + +VI+ KV E V+ + V G + T+ ++ T E G
Sbjct: 438 MEFVESYDKDAVIQAKVKEVESKQAVLELADQ--VLGQMRLADYTYDRVKDLTQELNVGD 495
Query: 919 VIQAAILDVAKAERLVDLSLKTV 941
+ I++V + RL+++S K V
Sbjct: 496 EVAVKIVNVDRKNRLINVSHKAV 518
Score = 42 (19.8 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 498
+LEK YK G V+ I+ R G + AF L + DVKP
Sbjct: 93 ELEKAYKAGEMVKGVIIE-RVKGGFTVDLNSVRAF--LPGSLVDVKP 136
Score = 40 (19.1 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGI 1085
Y G VQA I I P R+ GI
Sbjct: 405 YKKGDEVQAVILGIDPERERISLGI 429
Score = 37 (18.1 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
DL++ VG V I++V+ + I +S K
Sbjct: 486 DLTQELNVGDEVAVKIVNVDRKNRLINVSHK 516
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 106 (42.4 bits), Expect = 0.00097, Sum P(3) = 0.00097
Identities = 42/176 (23%), Positives = 75/176 (42%)
Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
IL+ S E ++ G V G V + +GA V GGV L + M+ + P
Sbjct: 177 ILEESRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVDL-GGVDGLLHVTDMAWRRVNHP 235
Query: 540 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
+ +G + +V+ + + RI++ K+ L + ++ A+ + G +T I
Sbjct: 236 NEILNIGETVKVQVIKINKDTHRISLGMKQ-LQEDPWDLVG--AKYPLESVHTGRVTNIT 292
Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
+G FV GV+G SE+ P + Q V+ ++ A RR++L
Sbjct: 293 DYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGAKRRVSL 348
Score = 104 (41.7 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 30/108 (27%), Positives = 54/108 (50%)
Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
Q+L +D N+++S + L S A+Q ++ V G V NI E G FV LG
Sbjct: 159 QILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVD-LGG 217
Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
+ G + + ++ +G++V+ ++ +N +T RI+L +KQ
Sbjct: 218 VDGLLHVTDMAWRRVNHPNEILNIGETVKVQVIKINKDTHRISLGMKQ 265
Score = 93 (37.8 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 36/144 (25%), Positives = 64/144 (44%)
Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN-MIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
+DG S L + P E + P +V+G VKN+T G FI L +D V
Sbjct: 339 IDGAKRRVSLGLKQTMRNPW---EVFAETHPEGTVVEGEVKNITEFGLFIGLPGDIDGMV 395
Query: 1407 LLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1465
LS+LS D E + + G +V V V+ +R+ +++K+ +++ +
Sbjct: 396 HLSDLSWDERGEDAIQNYRKGDMVKAVVSEVDIDKERISLSIKSVGGDKFAEA----VGG 451
Query: 1466 LHVGDIVIGQIKRVESYGLFITIE 1489
+ G I+ + +E G+ + E
Sbjct: 452 VKRGSIITVNVTAIEDGGIEVEYE 475
Score = 81 (33.6 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-SPEKEFPIGKLVAGRVLSVEPLSKR 1442
G V N+T G F+ L ++ V +S +S P K + V VL ++ +R
Sbjct: 286 GRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGAKRR 345
Query: 1443 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFI 1486
V + LK + + E+ + H G +V G++K + +GLFI
Sbjct: 346 VSLGLKQT---MRNPWEV--FAETHPEGTVVEGEVKNITEFGLFI 385
Score = 72 (30.4 bits), Expect = 4.6e-06, Sum P(4) = 4.6e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA----GATV----ESGSVIQAAILD 926
G+V+EG+V +FG+ + D+ G + L+ G G +++A + +
Sbjct: 368 GTVVEGEVKNITEFGLFIGLP--GDIDGMVHLSDLSWDERGEDAIQNYRKGDMVKAVVSE 425
Query: 927 VAKAERLVDLSLKTVFIDRFREA 949
V + + LS+K+V D+F EA
Sbjct: 426 VDIDKERISLSIKSVGGDKFAEA 448
Score = 67 (28.6 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 42/176 (23%), Positives = 78/176 (44%)
Query: 486 FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK- 541
FE L+ F + G VVKGKVIA+++ AI+ G K + + EF PG+
Sbjct: 9 FEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDV--GYKMEGRV-ELKEF--ANPGEA 63
Query: 542 -KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHGWITKIE 597
+ +G E+ + ++ R + + + + A + +YA+ D+ + +++
Sbjct: 64 PEISIGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYAD--DQRVEGAIFGRVK 121
Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ---VVKC-RIMSSIPASRR 649
G F G F P S++ + P + + + Q ++K R +I SRR
Sbjct: 122 --GGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRR 175
Score = 63 (27.2 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 37/172 (21%), Positives = 74/172 (43%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G++V+ E+ I L + G +H+++++ D+ E+ N++ G V A +
Sbjct: 368 GTVVEGEVKNITEFGLFIGLPGDIDGMVHLSDLSWDERG--EDAIQNYRKGDMVKAVV-- 423
Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
++ D+ K + LSIK +V G K V G +T V ++ + +
Sbjct: 424 --SEVDIDKERI-SLSIK----SVG--GDKFAEAVGGVKRGSIITVNVTAIE-DGGIEVE 473
Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
+K+ FI S + RF +G V V +++ + + L L ++
Sbjct: 474 YEGMKS--FIRRSDLSRDRADQRPERFSVGDKVDVRVTNVDSKTRRLGLSIK 523
Score = 62 (26.9 bits), Expect = 7.2e-06, Sum P(4) = 7.2e-06
Identities = 31/133 (23%), Positives = 57/133 (42%)
Query: 1201 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI--H 1258
SE+ ++ H GK ++S ++E +++ L + + +S + + F H
Sbjct: 311 SEMSWTKKNVHPGK-----IVSTSQEVEVMVLEIDGAKRRVSLGLKQTMRNPWEVFAETH 365
Query: 1259 -EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
EG +V G + I GL + + + G VH ++L +DE D + Y
Sbjct: 366 PEGTVVEGEVKNITEF--GLFIGLPGDIDGMVHLSDLS----------WDERGEDAIQNY 413
Query: 1318 DEGQFVKCKVLEI 1330
+G VK V E+
Sbjct: 414 RKGDMVKAVVSEV 426
Score = 62 (26.9 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 30/131 (22%), Positives = 57/131 (43%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
GQ V G V + A + + + L + D A+ + +IG+ V V+ I
Sbjct: 196 GQTVDGVVKNITEYGAFVDLGG-VDGLLHVTDMAWR--RVNHPNEILNIGETVKVQVIKI 252
Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
NK+ + L ++ Q+ D + +++ +H G R++ I G V++ P
Sbjct: 253 NKDTHRISLGMKQLQEDPWDLVG--AKYPLES-VHTG-----RVTNITDY--GAFVELEP 302
Query: 1284 HLYGRVHFTEL 1294
+ G VH +E+
Sbjct: 303 GVEGLVHVSEM 313
Score = 55 (24.4 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 876 SVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
SV G+V D+G V E H + + G V + ++ +L++
Sbjct: 282 SVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDG 341
Query: 930 AERLVDLSLK 939
A+R V L LK
Sbjct: 342 AKRRVSLGLK 351
Score = 47 (21.6 bits), Expect = 6.9e-09, Sum P(4) = 6.9e-09
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV 1103
Y + S+ +T I ++ G G +H++E++ K NV
Sbjct: 278 YPLESVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNV 320
Score = 39 (18.8 bits), Expect = 4.6e-06, Sum P(4) = 4.6e-06
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 1241 ISDKTVDISNDNMQTFIHEGDI 1262
I D +++ + M++FI D+
Sbjct: 465 IEDGGIEVEYEGMKSFIRRSDL 486
Score = 39 (18.8 bits), Expect = 0.00020, Sum P(4) = 0.00020
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGG 1276
D ++ + E DI RIS + VGG
Sbjct: 417 DMVKAVVSEVDIDKERISLSIKSVGG 442
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 171 (65.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 82/343 (23%), Positives = 139/343 (40%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+++ GM VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246
Query: 555 GVKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
+R V+ K L + +AI Y E T +T G +T + +GCFV GV+G
Sbjct: 247 KFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTK--LT-GRVTNLTDYGCFVEIEEGVEGL 303
Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXX 671
SE+ + PS + +VG VV+ ++ RRI+L +K + +
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLG--LKQCKANP-WQQFAET 360
Query: 672 XXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
I G G HL+D + ++V K G E +++
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL 420
Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
+D E + L K + + + ++V G V + G V + G+
Sbjct: 421 QVDAERERISLGVKQL---AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGY 477
Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
S+A + D + VG V + V+ + I+LS++
Sbjct: 478 LRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520
Score = 103 (41.3 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 30/108 (27%), Positives = 53/108 (49%)
Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
G V N+T GCF+ + ++ V +S + P K +G +V VL ++ +R
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 1443 VEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
+ + LK + Q +E +N GD V G+IK + +G+FI ++
Sbjct: 342 ISLGLKQCKANPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLD 384
Score = 95 (38.5 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITI 1488
+R+ + +K ++ NN L+ G IV G++ V++ G + +
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVEL 470
Score = 92 (37.4 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 824
G V N+ + GCFV + G S+ +D ++ SK VG V +LD++ E
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 340
Query: 825 RITLSLKQSCCSSTDASFMQEH 846
RI+L LKQ C ++ F + H
Sbjct: 341 RISLGLKQ-CKANPWQQFAETH 361
Score = 79 (32.9 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 723 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVR 780
EF +++ LD + +N+++S + ++I S D ++ V G V N+ + G FV
Sbjct: 153 EF-KVIKLDQKRNNVVVSRR-AVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVD 210
Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
LG + G + + S+ VG + +L + E R++L LKQ
Sbjct: 211 -LGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQ 261
Score = 76 (31.8 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 31/131 (23%), Positives = 62/131 (47%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKS---KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
V+ + + K ++ + + +Y +A +T G I K G V NG++
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDA--ETVT-GVINGKVKGGFTVEL-NGIRA 129
Query: 612 FAPRSELGLDP 622
F P S + + P
Sbjct: 130 FLPGSLVDVRP 140
Score = 69 (29.3 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 33/155 (21%), Positives = 64/155 (41%)
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
V+ GKV G V+ G++A P + + V+ + G EL F+V+ + KR
Sbjct: 111 VINGKVKG----GFTVEL-NGIRAFLP-GSLVDVRPVRDTLHLE-GKELEFKVIKLDQKR 163
Query: 561 --ITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
+ V+ + + A E + + G + + +G FV GV G ++
Sbjct: 164 NNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITD 222
Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
+ PS + +VG + +++ R++L
Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Score = 65 (27.9 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 875 GSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
G+ + G+V D+G V EE H + + V G V++ +LD+
Sbjct: 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 336
Query: 929 KAERLVDLSLK 939
+ R + L LK
Sbjct: 337 EERRRISLGLK 347
Score = 60 (26.2 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDV- 927
G +EGK+ DFG+ + + D V+ +AG + G I A +L V
Sbjct: 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVD 423
Query: 928 AKAERLVDLSLKTVFIDRF 946
A+ ER + L +K + D F
Sbjct: 424 AERER-ISLGVKQLAEDPF 441
Score = 57 (25.1 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 21/92 (22%), Positives = 39/92 (42%)
Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
IV G V V +KG + L+ ++ + S S VE +G V + V+ +
Sbjct: 453 IVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKN 512
Query: 1441 KRVEVTLKTSDSR-------TASQSEINNLSN 1465
+ + ++++ D T ++ E N SN
Sbjct: 513 RAISLSVRAKDEADEKDAIATVNKQEDANFSN 544
Score = 47 (21.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 272 IDVKPGLLLQGVVRSIDR 289
I+ +PG +++GVV +ID+
Sbjct: 16 IETRPGSIVRGVVVAIDK 33
Score = 47 (21.6 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 30/184 (16%), Positives = 79/184 (42%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
++ G V+ +I I + + G G +H+++++ + + E +K G + A
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAG--EEAVREYKKGDEIAAV 418
Query: 1121 IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
++ + D ++ + L +K L + + + G VTG V VD + A
Sbjct: 419 VL----QVDAERERI-SLGVK--QLAEDPFNNWVALNKK----GAIVTGKVTAVDAKGAT 467
Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
+ ++ ++ L +++ + +++ +G V ++++ + + L +R +D
Sbjct: 468 VELADGVEGYLRASEASRD--RVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRA-KDE 524
Query: 1241 ISDK 1244
+K
Sbjct: 525 ADEK 528
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 171 (65.3 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 81/340 (23%), Positives = 139/340 (40%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VKG V + +GA V GG+ L + M+ + P + VG E+ +VL
Sbjct: 192 GQEVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSEIVNVGDEIQVKVLKFDR 250
Query: 559 KRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
+R V+ K L + +AI + Y E + +L G +T + +GCFV GV+G S
Sbjct: 251 ERTRVSLGMKQLGEDPWVAIANRYPEGS-KL--SGRVTNLTDYGCFVEIQEGVEGLVHVS 307
Query: 617 ELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXX 675
E+ + PS + ++G V+ ++ RRI+L +K ++
Sbjct: 308 EMDWTNKNIHPSKVVNLGDTVEVLVLEIDEERRRISLG--LKQC-IANPWEEFAKNFNKG 364
Query: 676 XXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV-LDN 732
I G G HL+D + A ++V K G E D +++ +D
Sbjct: 365 DKVSGKIKSITDFGIFIGLDGGIDGLVHLSD-ISWAGGEEAVRDYKKGDEIDAIVLQVDP 423
Query: 733 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
E + L K + + +D ++V G V + G + + G+ R
Sbjct: 424 ERERISLGVKQAEDDPFNMYLADKKK---GAIVTGKVTEVDAKGATILLAESVEGYL-RV 479
Query: 793 KAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ +R D S VG V + + V+ + I+LS+K
Sbjct: 480 SDISVERIEDASTVLKVGDDVEARFMGVDRKNRTISLSIK 519
Score = 101 (40.6 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 79/394 (20%), Positives = 151/394 (38%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G V G + V A + PG + + P+ + E KP +FKV R V S
Sbjct: 114 GKVKGGFTVEVSDIRAFL--PGSLVDVRPVRDTAHLE-GKP-LEFKVIKLDQKRNNVVVS 169
Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
+R + + + + +L L S AE + G + + +G FV G+ G +++
Sbjct: 170 RRAVIEAEGSAERDEL--LESLAEGQE---VKGIVKNLTDYGAFVDL-GGIDGLLHITDM 223
Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXX 678
PS + +VG ++ +++ R++L MK ++ ED
Sbjct: 224 AWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLG--MK--QLGEDPWVAIANRYPEGSK 279
Query: 679 XXXXXXXXXXX-----IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDN 732
I +G +G + + D V+ G + L++ +D
Sbjct: 280 LSGRVTNLTDYGCFVEIQEGV-EGLVHVSEM-DWTNKNIHPSKVVNLGDTVEVLVLEIDE 337
Query: 733 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
E + L K + N ++ A + + V G + +I + G F+ G + G S
Sbjct: 338 ERRRISLGLKQCIANPWEEF---AKNFNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLS 394
Query: 793 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
+ + Y G + + +L V+ E RI+L +KQ+ D F +L ++K
Sbjct: 395 DISWAGGEEAVRDYKKGDEIDAIVLQVDPERERISLGVKQA----EDDPFNM--YLADKK 448
Query: 853 IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
+ + K + K ++ +EG + S+
Sbjct: 449 KGAIVTGKVTEVDAKGAT-ILLAESVEGYLRVSD 481
Score = 88 (36.0 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 21/94 (22%), Positives = 47/94 (50%)
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
+ D IV G V V +KG I+L+ ++ + +S++S +E +G V R
Sbjct: 444 LADKKKGAIVTGKVTEVDAKGATILLAESVEGYLRVSDISVERIEDASTVLKVGDDVEAR 503
Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1466
+ V+ ++ + +++K D ++ ++NL+ +
Sbjct: 504 FMGVDRKNRTISLSIKAKDQADEREA-MDNLNQV 536
Score = 51 (23.0 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
+ +PG +++G ++AV+ IV G+K+
Sbjct: 17 ETRPGSIIRGTIVAVNKDNVIVD--AGLKS 44
Score = 41 (19.5 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 272 IDVKPGLLLQGVVRSIDRTRKVV 294
I+ +PG +++G + ++++ +V
Sbjct: 16 IETRPGSIIRGTIVAVNKDNVIV 38
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 153 (58.9 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 47/160 (29%), Positives = 75/160 (46%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
+K G VKGKV + FGA V GG + L +S V+P + +VG EL VL
Sbjct: 461 LKEGSKVKGKVTKIMPFGAFVDL-GGFEGLLRAQDISWQRNVRPEEHLQVGQELEVVVLE 519
Query: 556 VKSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V + V+ K L + E + + G + KI +HG + + G++G+ P
Sbjct: 520 VDRHNLKVSLGLKQLTPDPWQKIPD--ELKEGAVLEGTVVKILRHGLILELFPGIEGYLP 577
Query: 615 RSELGLDPGCEP-SSMYHVGQVVKCRIMSSIPASRRINLS 653
E + EP Y VGQ ++ +I++ P +++ LS
Sbjct: 578 ARETEAEN--EPLMKKYQVGQKMEVKILTLKPLEKKMTLS 615
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 162 (62.1 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 82/342 (23%), Positives = 133/342 (38%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
++ G VKG V + +GA V GGV L + M+ + P + VG E++ +VL
Sbjct: 189 LQEGTEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLK 247
Query: 556 VKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
R V+ K L + +AI Y E +L G +T + +GCFV GV+G
Sbjct: 248 FDRDRTRVSLGLKQLGEDPWVAIAKRYPEG-HKL--SGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXX 672
SE+ + PS + +VG V+ ++ RRI+L +K + +
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLG--LKQCKANP-WQSFAEAQ 361
Query: 673 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL-LV 729
I G G HL+D + ++V K G E + L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLA 421
Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
+D E + L K + SD ++V+G V + G + + G+
Sbjct: 422 VDAERERISLGIKQMENDPFNAYVSDNKK---GALVNGTVTAVDAKGATIELEDGVEGYI 478
Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
S+ + D S VG V + V+ + I LS+K
Sbjct: 479 RASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIK 520
Score = 135 (52.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 49/204 (24%), Positives = 91/204 (44%)
Query: 460 GSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
G V V +L ++ G+ + A F + K G V GK+ ++ FG +
Sbjct: 325 GDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAK-GDKVTGKIKSITDFGIFIGL 383
Query: 519 PGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 574
GG+ L H+S+ PG ++FK G E+ VL V ++R ++ + + +
Sbjct: 384 EGGIDGLV---HLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERIS--LGIKQMEN 438
Query: 575 AILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
++Y + + +G +T ++ G + +GV+G+ SE+ D + S + +VG
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 498
Query: 634 QVVKCRIMSSIPASRRINLSFMMK 657
V+ + +R INLS K
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAK 522
Score = 112 (44.5 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 78/374 (20%), Positives = 154/374 (41%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE + + + G +VKG V+A+++ +V G+K+ +P +F+ +
Sbjct: 6 AQLFEEFL-NETQFQQGTIVKGTVVAIENGYVLVD--AGLKSESAIP-AEQFKNAAGELE 61
Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILS-SYAEATDRL-ITHGWITKIEK 598
+VG+++ + V+ ++ +K +L +Y EA + I +G K++
Sbjct: 62 VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIING---KVK- 117
Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSF 654
G F NG++ F P S + + P + + + + +V+K + +++ SRR +
Sbjct: 118 -GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR---AV 173
Query: 655 MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATV 713
+ + V D + G G + +A ++H +
Sbjct: 174 IESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPS- 232
Query: 714 MKSVIKPGYEF-DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772
++ G E ++L D + + + L K + A + G V N+
Sbjct: 233 --EIVNVGDEILVKVLKFDRDRTRVSLGLKQL---GEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSL 830
+ GCFV + G S+ +D ++ SK VG V +LD++ E RI+L L
Sbjct: 288 TDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGL 346
Query: 831 KQSCCSSTDASFMQ 844
KQ C ++ SF +
Sbjct: 347 KQ-CKANPWQSFAE 359
Score = 90 (36.7 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 30/110 (27%), Positives = 55/110 (50%)
Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
V G +K++T G FI L +D V LS++S E +EF G ++ VL+V+
Sbjct: 367 VTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAER 426
Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
+R+ + +K ++ + +N G +V G + V++ G I +E+
Sbjct: 427 ERISLGIKQMENDPFNAYVSDNKK----GALVNGTVTAVDAKGATIELED 472
Score = 67 (28.6 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 19/88 (21%), Positives = 38/88 (43%)
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
+ D +V G V V +KG I L ++ + S +S +E +G V +
Sbjct: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEI 1460
V+ ++ + +++K D A + E+
Sbjct: 505 FTGVDRKNRVINLSIKAKDE--AEEQEV 530
Score = 56 (24.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 875 GSVIEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDV 927
G + GK+ DFG+ + E H SD+ + + A + G I A +L V
Sbjct: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEE-AVREFKKGDEISAVVLAV 422
Query: 928 -AKAERLVDLSLKTVFIDRF 946
A+ ER + L +K + D F
Sbjct: 423 DAERER-ISLGIKQMENDPF 441
Score = 50 (22.7 bits), Expect = 0.00071, Sum P(3) = 0.00071
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G+LV +T + ++ G G I +EV+ D+ +E+ +G V A+
Sbjct: 451 GALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDR---IEDASLILNVGDKVEAKFTG 507
Query: 1124 KSNK 1127
K
Sbjct: 508 VDRK 511
Score = 39 (18.8 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 30/145 (20%), Positives = 53/145 (36%)
Query: 69 EIHAEVDAEFEAVERGLHXXXXXXXXXTERKA----NETVDDLGSLFGDGISGKLPRYAN 124
++ ++VD +AVE G +A + ++ ++ G I+GK+ +
Sbjct: 63 QVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGI-INGKV-KGGF 120
Query: 125 KITLKNISAGM--KLWGV-----VAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEA 177
+ L I A + L V A + K+L ++++E
Sbjct: 121 TVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSV 180
Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDD 202
D LL T+ G V IV L D
Sbjct: 181 ERDELLETL-QEGTEVKGIVKNLTD 204
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 162 (62.1 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 82/342 (23%), Positives = 133/342 (38%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
++ G VKG V + +GA V GGV L + M+ + P + VG E++ +VL
Sbjct: 189 LQEGTEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLK 247
Query: 556 VKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
R V+ K L + +AI Y E +L G +T + +GCFV GV+G
Sbjct: 248 FDRDRTRVSLGLKQLGEDPWVAIAKRYPEG-HKL--SGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXX 672
SE+ + PS + +VG V+ ++ RRI+L +K + +
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLG--LKQCKANP-WQSFAEAQ 361
Query: 673 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL-LV 729
I G G HL+D + ++V K G E + L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLA 421
Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
+D E + L K + SD ++V+G V + G + + G+
Sbjct: 422 VDAERERISLGIKQMENDPFNAYVSDNKK---GALVNGTVTAVDAKGATIELEDGVEGYI 478
Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
S+ + D S VG V + V+ + I LS+K
Sbjct: 479 RASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIK 520
Score = 135 (52.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 49/204 (24%), Positives = 91/204 (44%)
Query: 460 GSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
G V V +L ++ G+ + A F + K G V GK+ ++ FG +
Sbjct: 325 GDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAK-GDKVTGKIKSITDFGIFIGL 383
Query: 519 PGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 574
GG+ L H+S+ PG ++FK G E+ VL V ++R ++ + + +
Sbjct: 384 EGGIDGLV---HLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERIS--LGIKQMEN 438
Query: 575 AILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
++Y + + +G +T ++ G + +GV+G+ SE+ D + S + +VG
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 498
Query: 634 QVVKCRIMSSIPASRRINLSFMMK 657
V+ + +R INLS K
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAK 522
Score = 112 (44.5 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 78/374 (20%), Positives = 154/374 (41%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE + + + G +VKG V+A+++ +V G+K+ +P +F+ +
Sbjct: 6 AQLFEEFL-NETQFQQGTIVKGTVVAIENGYVLVD--AGLKSESAIP-AEQFKNAAGELE 61
Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILS-SYAEATDRL-ITHGWITKIEK 598
+VG+++ + V+ ++ +K +L +Y EA + I +G K++
Sbjct: 62 VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIING---KVK- 117
Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSF 654
G F NG++ F P S + + P + + + + +V+K + +++ SRR +
Sbjct: 118 -GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR---AV 173
Query: 655 MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATV 713
+ + V D + G G + +A ++H +
Sbjct: 174 IESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPS- 232
Query: 714 MKSVIKPGYEF-DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772
++ G E ++L D + + + L K + A + G V N+
Sbjct: 233 --EIVNVGDEILVKVLKFDRDRTRVSLGLKQL---GEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSL 830
+ GCFV + G S+ +D ++ SK VG V +LD++ E RI+L L
Sbjct: 288 TDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGL 346
Query: 831 KQSCCSSTDASFMQ 844
KQ C ++ SF +
Sbjct: 347 KQ-CKANPWQSFAE 359
Score = 90 (36.7 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 30/110 (27%), Positives = 55/110 (50%)
Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
V G +K++T G FI L +D V LS++S E +EF G ++ VL+V+
Sbjct: 367 VTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAER 426
Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
+R+ + +K ++ + +N G +V G + V++ G I +E+
Sbjct: 427 ERISLGIKQMENDPFNAYVSDNKK----GALVNGTVTAVDAKGATIELED 472
Score = 67 (28.6 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 19/88 (21%), Positives = 38/88 (43%)
Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
+ D +V G V V +KG I L ++ + S +S +E +G V +
Sbjct: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEI 1460
V+ ++ + +++K D A + E+
Sbjct: 505 FTGVDRKNRVINLSIKAKDE--AEEQEV 530
Score = 56 (24.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 875 GSVIEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDV 927
G + GK+ DFG+ + E H SD+ + + A + G I A +L V
Sbjct: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEE-AVREFKKGDEISAVVLAV 422
Query: 928 -AKAERLVDLSLKTVFIDRF 946
A+ ER + L +K + D F
Sbjct: 423 DAERER-ISLGIKQMENDPF 441
Score = 50 (22.7 bits), Expect = 0.00071, Sum P(3) = 0.00071
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G+LV +T + ++ G G I +EV+ D+ +E+ +G V A+
Sbjct: 451 GALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDR---IEDASLILNVGDKVEAKFTG 507
Query: 1124 KSNK 1127
K
Sbjct: 508 VDRK 511
Score = 39 (18.8 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 30/145 (20%), Positives = 53/145 (36%)
Query: 69 EIHAEVDAEFEAVERGLHXXXXXXXXXTERKA----NETVDDLGSLFGDGISGKLPRYAN 124
++ ++VD +AVE G +A + ++ ++ G I+GK+ +
Sbjct: 63 QVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGI-INGKV-KGGF 120
Query: 125 KITLKNISAGM--KLWGV-----VAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEA 177
+ L I A + L V A + K+L ++++E
Sbjct: 121 TVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSV 180
Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDD 202
D LL T+ G V IV L D
Sbjct: 181 ERDELLETL-QEGTEVKGIVKNLTD 204
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 146 (56.5 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 48/175 (27%), Positives = 84/175 (48%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K G VV+G V + FGA V GGV L + +S + +P + + G ++ +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242
Query: 554 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
L V + +RI+++ K + +A D I G + ++ G FV GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM--MKPTRVSED 664
S++ P+ + +GQ VK +++ A +RI+LS ++ V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354
Score = 127 (49.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 36/128 (28%), Positives = 65/128 (50%)
Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
+++ K E I L +V+G V+ +T G F+ + +D V +S +S VE P +
Sbjct: 172 ELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGG-VDGLVHISQISHERVEQPSE 230
Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVE 1480
G+ V +VLSV+ ++R+ +++K A N+ + GDI G +KR+
Sbjct: 231 VLEQGQKVKVKVLSVDADTQRISLSIKA-----AQPGPWENVGGEVKAGDIREGVVKRLV 285
Query: 1481 SYGLFITI 1488
++G F+ I
Sbjct: 286 TFGAFVEI 293
Score = 98 (39.6 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 32/135 (23%), Positives = 68/135 (50%)
Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
+ T LS PG ++ I +G VK + + G F+ + ++ V +S +
Sbjct: 247 ADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQI 306
Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS---DSRTA--SQSEIN-NLSN 1465
++ +V++P + +G+ V +VL V KR+ +++K + ++ T SQ E N + +
Sbjct: 307 ANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSAT 366
Query: 1466 LHVGDIVIGQIKRVE 1480
+ DI+ Q+K+++
Sbjct: 367 FQLSDIIGEQLKKLK 381
Score = 78 (32.5 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 27/119 (22%), Positives = 56/119 (47%)
Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
FI S E +++F + GK + ++ +++EK R++L + + +D
Sbjct: 127 FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180
Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
+ + EGD+V G + ++ G V +G + G VH +++ + V P ++GQ
Sbjct: 181 EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQ 236
Score = 63 (27.2 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 35/141 (24%), Positives = 59/141 (41%)
Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
++ +G VTG V KV+ + L+ + + D SEL HI KA
Sbjct: 14 ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELANV----HIEKA--SD 60
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
V+ +++ +L + L +S + VD +Q + G + + I++G GL
Sbjct: 61 VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118
Query: 1278 VVQIG-----PHLYGRVHFTE 1293
VV +G P VH+ E
Sbjct: 119 VVDLGVRGFIPASLVEVHYVE 139
Score = 50 (22.7 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 99 KANETVDDLGSL-FGDGISGKLPRYANKITLKNISAGMKLWGVV 141
K NE V D L GD ++G + + K L N+ G K GV+
Sbjct: 4 KMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNV--GYKTDGVI 45
Score = 37 (18.1 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 916 SGSVIQAAILDVAKAERLVDLSLK 939
SG V + D+ +VDL ++
Sbjct: 102 SGHVFDVTVKDIVNGGLVVDLGVR 125
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 146 (56.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 72/338 (21%), Positives = 134/338 (39%)
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
+++G V + ++G V GGV L +S V PG +K G ++ +V+ +R
Sbjct: 205 LIEGIVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKER 263
Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI----TKIEKHGCFVRFYNGVQGFAPRS 616
H +K+ A+ ++E D L I + IE +G FV N ++GF S
Sbjct: 264 ---KHLSLSIKA--ALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHIS 318
Query: 617 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXX 675
E+ D + P + GQ + ++ P RR+ +S +R D
Sbjct: 319 EISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPF-DEFMKSYKIADV 377
Query: 676 XXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNES 734
+ G +G + E + + K G + +++ +D E+
Sbjct: 378 VEGEITSVTSFGAFVKLGGIEGLLHNEDAS--WDRNDKCKDKFSQGDKIKVKIIKIDEEN 435
Query: 735 SNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
+ LSAK +NS+ + + IH +V G + +I + G FV + +
Sbjct: 436 QKISLSAKE--LNSSPV--QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKED 491
Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+L +G + + I+ ++ + RI LS+K
Sbjct: 492 ISTSMLENLK----IGDDIEAAIVFIDEKKNRIRLSVK 525
Score = 118 (46.6 bits), Expect = 9.0e-07, Sum P(3) = 9.0e-07
Identities = 80/344 (23%), Positives = 136/344 (39%)
Query: 543 FKVGAELVFRVLGVKSKRITVTHKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGC 601
F VG + V+G + R ++HKK L K K + + +Y E D + T + K K G
Sbjct: 75 FNVGDSIKVAVMGSRGGRSLLSHKKALRKEKVIEFIKNYQENQDDIFTVKVVGK-NKGGL 133
Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
V N V+ F P+S+ G E +++ +G+ K +I+ + I +S K T
Sbjct: 134 IVVDENDVEFFLPKSQYGFK---ETNNI--IGKTFKVKIIKIDKDEQSIIVS--RKKTLD 186
Query: 662 SEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVM--KSVIK 719
E + K + G D L H + + K +
Sbjct: 187 DE-----RRKRKELINNVAQQEDLIEGIVKKITTYGMFVDVGGVDGLVHYSEISYKGPVN 241
Query: 720 PG--Y-EFDQLLV----LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772
PG Y E D++ V D E +L LS K +L + ++ D + + V NI
Sbjct: 242 PGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPDPWSEI-KDTLDV--GDTIKVIVSNI 298
Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLK 831
G FV + GF S+ + K Y GQ + ++++N R+ +SL+
Sbjct: 299 EPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLR 358
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW--VEGFI 873
D FM+ + + + + S G+ +K +EG +
Sbjct: 359 NLLSRPFD-EFMKSYKIADVVEGEITSVTSFGAFVKLGGIEGLL 401
Score = 89 (36.4 bits), Expect = 9.0e-07, Sum P(3) = 9.0e-07
Identities = 26/114 (22%), Positives = 57/114 (50%)
Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1424
+P + KI + IV+G ++++ G F+ LS+ +DA + ++S +E+
Sbjct: 448 SPVQEYAKIHKVGD--IVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LK 501
Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ--SEINNLSNLHVGDIVIGQI 1476
IG + ++ ++ R+ +++K + +EINN + +GDI+ Q+
Sbjct: 502 IGDDIEAAIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQL 555
Score = 80 (33.2 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 25/102 (24%), Positives = 55/102 (53%)
Query: 851 EKIAMLQSSKHNGSELK-WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL 909
+KI+ L + + N S ++ + + +G +++G + + DFGV V ++ D I +
Sbjct: 436 QKIS-LSAKELNSSPVQEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDA--LIHKEDI 492
Query: 910 AGATVES---GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
+ + +E+ G I+AAI+ + + + + LS+K + + RE
Sbjct: 493 STSMLENLKIGDDIEAAIVFIDEKKNRIRLSVKNLVRIKERE 534
Score = 56 (24.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
+ VG +V+ I +IK + ++ IH K ++ ++ N KIG + A
Sbjct: 457 HKVGDIVKGTIRDIKDFGVFVELSKNVDALIH-------KEDISTSMLENLKIGDDIEAA 509
Query: 1121 IIAKSNKPDMKKSFLWELSIKPSMLTVSE 1149
I+ D KK+ + LS+K +++ + E
Sbjct: 510 IVFI----DEKKNRI-RLSVK-NLVRIKE 532
Score = 40 (19.1 bits), Expect = 9.0e-07, Sum P(3) = 9.0e-07
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLV-LRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
EF + + I V G + S+ ++L + D + D ND + +GD +
Sbjct: 367 EFMKSYKIADVVEGEITSVTSFGAFVKLGGIEGLLHN-EDASWD-RNDKCKDKFSQGDKI 424
Query: 1264 GGRISKI 1270
+I KI
Sbjct: 425 KVKIIKI 431
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 127 (49.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 84/372 (22%), Positives = 151/372 (40%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
F+ S ++ G +V+G + ++ +V G+K+ +P + +F + G +VG++++
Sbjct: 38 FSDSLIREGDMVEGVIKSISPHFVLVNL--GLKSEGKIP-VQQFHDL--GT-LEVGSKII 91
Query: 551 FRVLGVK--SKRITVTHKKTLVKSKL--AILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
V + S + +++ K L K K+ + Y +D + G I K GC V
Sbjct: 92 VYVEKTETGSGNLVLSYTKAL-KQKVWNRLYEMYLNGSDEDVM-GVILYTIKSGCIVEV- 148
Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP------ASRRINLSFMMKPTR 660
G+ F P S L + P +P+++ VG +K RI+ P SRR L + + R
Sbjct: 149 EGLNAFLPNSHLDVRPVSDPATL--VGVKLKFRILKMDPKTGKIFVSRRKALGAVHEAAR 206
Query: 661 VSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVM--KSVI 718
SE I + G + + + A V S+
Sbjct: 207 -SEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDISWARVTHPSSIY 265
Query: 719 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
G E +++ +D E + L K N + + + P +V G V ++ + G
Sbjct: 266 SVGQEVRVKVIAVDPEKGRISLGVKQLTENPWKDVSKKYT---PGNVYPGVVTSVEDYGI 322
Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS-VRSNILDVNSETGRITLSLKQSCCS 836
FVR + G S + R K ++ S V +L V+ E +I LS+KQ C
Sbjct: 323 FVRLEEGVEGLV-HSGEISWTR---EKPLFLPNSKVNVMLLSVDEEGHKIALSVKQ-CSD 377
Query: 837 STDASFMQEHFL 848
+ F+ + L
Sbjct: 378 NPWKKFLDAYGL 389
Score = 70 (29.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 32/132 (24%), Positives = 60/132 (45%)
Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK----LDAKVLLSNLSDGYVESP 1419
D P K ++ ++V+ V +T G + L + V L+N+S + ++P
Sbjct: 377 DNPWKKF--LDAYGLGVVVKCKVVEITDSGIVLTLLDPGYSYVRGYVRLANIS--WSQNP 432
Query: 1420 EKE---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
KE F IG V +++ V P RV +K + + +S ++ DI+ ++
Sbjct: 433 RKELKRFTIGDEVEAKLVHVNPDRGRVMFNIKYVEYDPFEEF----ISRVNEKDIINAKV 488
Query: 1477 KRVESYGLFITI 1488
RVE G++I +
Sbjct: 489 IRVEDDGIYIEV 500
Score = 54 (24.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 852 KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE--HSDVYGFI 904
KIA+ + K+++ + +G V++ KV E D G+V++ + +S V G++
Sbjct: 367 KIALSVKQCSDNPWKKFLDAYGLGVVVKCKVVEITDSGIVLTLLDPGYSYVRGYV 421
Score = 48 (22.0 bits), Expect = 0.00048, Sum P(2) = 0.00047
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 1314 LSGYDEGQFVKCKVLEIS 1331
L Y G VKCKV+EI+
Sbjct: 384 LDAYGLGVVVKCKVVEIT 401
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/115 (23%), Positives = 49/115 (42%)
Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1137
EL+ +F IG + VN D+ V+ N+ + + I++ N+ D+ + +
Sbjct: 435 ELK-RFTIGDEVEAKLVHVNPDRGRVMFNI--KY-VEYDPFEEFISRVNEKDIINAKVIR 490
Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVS---IGQRVTGYVYKVDNEWALLTISRHLKA 1189
+ + V E G + + DVS +GQ ++ V D+ L I KA
Sbjct: 491 VEDDGIYIEVRE-GLEFFTAQSDVSRLTVGQHLSFVVCSKDHYSVKLEIITDEKA 544
>UNIPROTKB|Q0BZL2 [details] [associations]
symbol:HNE_2386 "S1 RNA binding domain protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000158 GenomeReviews:CP000158_GR
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_761081.1 ProteinModelPortal:Q0BZL2 SMR:Q0BZL2
STRING:Q0BZL2 GeneID:4287336 KEGG:hne:HNE_2386 PATRIC:32217623
ProtClustDB:CLSK2531628 BioCyc:HNEP228405:GI69-2408-MONOMER
Uniprot:Q0BZL2
Length = 771
Score = 132 (51.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
++K+ DL P M ++G V NVT+ G F+ + D V +S +SD +++ P G++V
Sbjct: 651 IDKVTDLKPGMRLEGVVTNVTAFGAFVDIGVHQDGLVHISEMSDTFIKDPHDAVKTGQVV 710
Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSR 1453
+ V+ V+ KR+ +++K R
Sbjct: 711 SVTVMEVDVARKRIGLSMKQGGKR 734
Score = 59 (25.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
DA+ +L E+IA E W EG + S+++GK E F F+E
Sbjct: 166 DAALEGARDILVERIAETPRLVGKVRETVWKEGKLGSSLVKGKEQEGAKFSDYFDFDE-- 223
Query: 899 DVYGFITHHQLA 910
V +H LA
Sbjct: 224 PVTQMPSHRALA 235
>UNIPROTKB|P46837 [details] [associations]
symbol:yhgF "predicted transcriptional accessory protein"
species:83333 "Escherichia coli K-12" [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006139 EMBL:U18997 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 PIR:B65136 RefSeq:NP_417866.4
RefSeq:YP_492025.1 ProteinModelPortal:P46837 SMR:P46837
DIP:DIP-12337N IntAct:P46837 MINT:MINT-1288997 PRIDE:P46837
EnsemblBacteria:EBESCT00000002880 EnsemblBacteria:EBESCT00000016404
GeneID:12932731 GeneID:947911 KEGG:ecj:Y75_p3769 KEGG:eco:b3407
PATRIC:32122250 EchoBASE:EB2768 EcoGene:EG12932
HOGENOM:HOG000270497 KO:K06959 ProtClustDB:CLSK862831
BioCyc:EcoCyc:G7746-MONOMER BioCyc:ECOL316407:JW3370-MONOMER
Genevestigator:P46837 Uniprot:P46837
Length = 773
Score = 135 (52.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
+E + DL P MI++G V NVT+ G F+ + D V +S+LS+ +VE P G +V
Sbjct: 642 VETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIV 701
Query: 1430 AGRVLSVEPLSKRVEVTLKTSD 1451
+VL V+ KR+ +T++ +
Sbjct: 702 KVKVLEVDLQRKRIALTMRLDE 723
Score = 53 (23.7 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 18/89 (20%), Positives = 36/89 (40%)
Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
+ T A+ ++L E+ A + + W ++ +V+ GK E F F+
Sbjct: 153 ADTKAALDGARYILMERFAEDAALLAKVRDYLWKNAHLVSTVVSGKEEEGAKFRDY--FD 210
Query: 896 EHSDVYGFITHHQLAGATVESGSVIQAAI 924
H + +H LA + V+Q ++
Sbjct: 211 HHEPLSTVPSHRALAMFRGRNEGVLQLSL 239
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 134 (52.2 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 81/367 (22%), Positives = 147/367 (40%)
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
T +++ G +G V + +GA V GGV L + MS + P + K G +L
Sbjct: 210 TLANLAEGQTREGVVKNITDYGAFVDI-GGVDGLLHVTDMSWGRLGHPSEMLKPGDKLSV 268
Query: 552 RVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
++L ++ I++ K+ LA+ + + DR+ G + + +G FV GV
Sbjct: 269 KILKYDQEKGKISLGLKQITPDPWLAVEQKF-QVGDRV--SGRVVSMTDYGAFVALDEGV 325
Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXX 668
+G SE+ PS + VG V+ ++ +RRI+L +K + +
Sbjct: 326 EGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLG--LKQAQANP-WTQL 382
Query: 669 XXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
+ G +G H++D + K + PG +
Sbjct: 383 EEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVHVSD----ISWTKRIKHPGEVYAKGQ 438
Query: 726 --QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
Q +VL D E+ L L K + +P A++ P + V G V ++ + G F+
Sbjct: 439 TVQAVVLNVDAENERLSLGIKQLTPDPWSVIP--ATY-RPGTRVRGKVTSVTDFGVFLEI 495
Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK--QSCCSSTD 839
+ G S+ + A VG + + +L V+ +I LS+K Q+ +
Sbjct: 496 EEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEKKIALSVKALQAAAEKAE 555
Query: 840 A-SFMQE 845
S+MQ+
Sbjct: 556 LESYMQD 562
Score = 108 (43.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 70/345 (20%), Positives = 138/345 (40%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 556
G +V+GK+ G V GV+A P S+ ++ +PG +G F+VL +
Sbjct: 131 GGIVEGKITGKVKGGLTVDI--GVQAFLPA---SQVDL-RPGGNLDKYIGVTDRFKVLKL 184
Query: 557 KSKR--ITVTHKKTLVKSKLAILS-SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
KR I ++ + L + + + + + A + G + I +G FV GV G
Sbjct: 185 NKKRGNIVLSRRVLLEEERAGVRTETLANLAEGQTREGVVKNITDYGAFVDI-GGVDGLL 243
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXX 672
+++ PS M G + +I+ +I+L + P
Sbjct: 244 HVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQITPDPWLAVEQKFQVGD 303
Query: 673 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQLLV- 729
+ +G +G + ++ L H + + +V G E + +++
Sbjct: 304 RVSGRVVSMTDYGAFVALDEGV-EGLVHVSEMSWTKRLRHPSDLLTV---GDEVETVVLG 359
Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGF 788
+D + + L K + N QL +P + + G + +I + G F+ + G
Sbjct: 360 IDTGNRRISLGLKQAQANPWTQLEEK----YPVGTKLEGQIKSITDFGVFIGVDEGIDGL 415
Query: 789 APRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
S +R + Y GQ+V++ +L+V++E R++L +KQ
Sbjct: 416 VHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAENERLSLGIKQ 460
Score = 91 (37.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 99/415 (23%), Positives = 157/415 (37%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VVKGKV+ + + +V G K+ +P + EF +VG E V +
Sbjct: 47 GEVVKGKVVHISNDYVLVDI--GYKSEGSIP-VEEFLDEAGNLTVQVGDE----VKALFE 99
Query: 559 KRITVTHKKTLVKSKLAILSSY----AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
++ L K K LS++ A + I G IT K G V GVQ F P
Sbjct: 100 RKENQKGYAVLSKRKADRLSAWDSIDAAGGEGGIVEGKITGKVKGGLTVDI--GVQAFLP 157
Query: 615 RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDXXXXXX 670
S++ L PG V +V+K + +I SRR+ L R +E
Sbjct: 158 ASQVDLRPGGNLDKYIGVTDRFKVLKLNKKRGNIVLSRRVLLEEERAGVR-TETLANLAE 216
Query: 671 XXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
I G G + ++ L H + M +KPG + ++L
Sbjct: 217 GQTREGVVKNITDYGAFVDI--GGVDGLLHVTDMSWGRLGHPSEM---LKPGDKLSVKIL 271
Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
D E + L K I L + V G V ++ + G FV + G
Sbjct: 272 KYDQEKGKISLGLKQ--ITPDPWLAVEQK-FQVGDRVSGRVVSMTDYGAFVALDEGVEGL 328
Query: 789 APRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
S+ +R S VG V + +L +++ RI+L LKQ+ + + ++E +
Sbjct: 329 VHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLGLKQA--QANPWTQLEEKY 386
Query: 848 LLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
+ K+ ++S G + EG I+G VH S D + +VY
Sbjct: 387 PVGTKLEGQIKSITDFGVFIGVDEG------IDGLVHVS-DISWTKRIKHPGEVY 434
Score = 87 (35.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 27/109 (24%), Positives = 56/109 (51%)
Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
++G +K++T G FI + +D V +S++S ++ P + + G+ V VL+V+ +
Sbjct: 392 LEGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAEN 451
Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
+R+ + +K T + + G V G++ V +G+F+ IE
Sbjct: 452 ERLSLGIK---QLTPDPWSVIP-ATYRPGTRVRGKVTSVTDFGVFLEIE 496
Score = 70 (29.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV 927
G+ + GKV DFGV + EE + G + +L+ V S G + A +L V
Sbjct: 476 GTRVRGKVTSVTDFGVFLEIEE--GIEGLVHVSELSREKVASPKDFASVGDELDAVVLSV 533
Query: 928 AKAERLVDLSLKTV 941
E+ + LS+K +
Sbjct: 534 DDVEKKIALSVKAL 547
>TIGR_CMR|GSU_1200 [details] [associations]
symbol:GSU_1200 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
Length = 402
Score = 116 (45.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 46/172 (26%), Positives = 78/172 (45%)
Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
GL + G+ V+G V G ++ G V+A CP +S P + F VG
Sbjct: 105 GLSALEDAYRAGIPVEGNVEKEIKGGFEIKVGGTVRAFCPYSQISLRRAANPAE-F-VGR 162
Query: 548 ELVFRVL--GVKSKRITVTHKKTLVKSKL----AILSSYAEATDRLITHGWITKIEKHGC 601
+L+F+V+ + + I ++H+ L + + A+ + E T +T G +T++ G
Sbjct: 163 QLLFKVVEFAERGRNIVLSHRAILEEEERQKREALKDTLKEGTT--LT-GTVTRLMPFGA 219
Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
FV GV+G P SE G E + VG+ V + + +I+LS
Sbjct: 220 FVDI-GGVEGLIPISEAGWSRVKEIGDVLSVGEQVTALVKRIDWENNKISLS 270
Score = 60 (26.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKR 1442
G V + G F+ L+ +D + +S L G + P + G V V V+ S+R
Sbjct: 294 GTVARLAPFGAFVTLAPGIDGLIHISKLGAGKRIAHPREVLKEGDAVEVTVEGVDRESRR 353
Query: 1443 VEVTLKTSDSRTASQSE 1459
+ + L + R A + E
Sbjct: 354 LSLALAAT-KRAAEEEE 369
>UNIPROTKB|Q60A39 [details] [associations]
symbol:MCA1032 "S1 RNA binding domain protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
GO:GO:0006139 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AE017282
GenomeReviews:AE017282_GR InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:YP_113508.1
ProteinModelPortal:Q60A39 SMR:Q60A39 GeneID:3102226
KEGG:mca:MCA1032 PATRIC:22605872 Uniprot:Q60A39
Length = 735
Score = 114 (45.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
+DL P M ++G V NVT+ G F+ + D V +S+L+D +V P + G +V +V
Sbjct: 613 KDLEPGMRLEGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRDPREVVKAGDVVQVKV 672
Query: 1434 LSVEPLSKRVEVTLKTSDS 1452
L V+ +R+ ++++ SD+
Sbjct: 673 LEVDIPRRRIALSMR-SDA 690
Score = 67 (28.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAI 924
E W EG ++ S+++GK F +EE + G +H LA + V+ + +
Sbjct: 149 EKVWSEGLLVSSLVDGKAEGGAKFKDYFDYEEA--LAGIPSHRALALLRGRNEGVL-SLV 205
Query: 925 LDVAKAE 931
L VAK E
Sbjct: 206 LRVAKDE 212
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 130 (50.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 46/162 (28%), Positives = 75/162 (46%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
++++ G + KG V ++ +FGA V GGV L + +S I P + +VG E+ V
Sbjct: 204 NNLQKGTIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEV 262
Query: 554 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
L V +R++++ K T ++A I G +TK+ G FVR G++G
Sbjct: 263 LDVDMDRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEG 319
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
SEL P + VG +++ RRI+LS
Sbjct: 320 LVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLS 361
Score = 124 (48.7 bits), Expect = 0.00060, P = 0.00060
Identities = 81/393 (20%), Positives = 159/393 (40%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151
Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDXXXX 668
E+ +P ++G+ ++ +I+ +++ SRR L R SE
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVR-SE--FLN 204
Query: 669 XXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
+ G G + L+ H++H + V++ G E +
Sbjct: 205 NLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
+L +D + + LS K + Q+ P + H +V G V ++ G FVR
Sbjct: 262 VLDVDMDRERVSLSLK-----ATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316
Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD----A 840
+ G S+ + + VG ++D++ E RI+LSLKQ+ T+ A
Sbjct: 317 IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPA 376
Query: 841 SF-MQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
+ M + + +E+ + + +W+EGF
Sbjct: 377 KYGMADSY--DEQGNYIFPEGFDAETNEWLEGF 407
Score = 45 (20.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 441 TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 500
TI V +EV L+ YK + R L +H + E LV T D K G
Sbjct: 42 TIVKVDRDEVL-LDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED-KEGR 99
Query: 501 VVKGK 505
++ K
Sbjct: 100 LILSK 104
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1497 1367 0.00088 124 3 11 22 0.41 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 622 (66 KB)
Total size of DFA: 519 KB (2239 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 105.45u 0.12s 105.57t Elapsed: 00:00:05
Total cpu time: 105.49u 0.12s 105.61t Elapsed: 00:00:05
Start: Sat May 11 15:10:33 2013 End: Sat May 11 15:10:38 2013