BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000449
         (1497 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297739784|emb|CBI29966.3| unnamed protein product [Vitis vinifera]
          Length = 1862

 Score = 2097 bits (5433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1065/1480 (71%), Positives = 1231/1480 (83%), Gaps = 68/1480 (4%)

Query: 18   KFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
            K   ASK  FK   +Q N+AV ++ LAL  +DDVP FPRGGG  L+++E D I AEVDAE
Sbjct: 18   KLRGASKKPFKPRMRQ-NEAVPSESLALQMEDDVPDFPRGGGSLLSRQEHDAIRAEVDAE 76

Query: 78   FEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKL 137
            FEA ER   KKNK  KK  +  A E  DD+GSLFGDGI+GKLPR+ANKITLKNIS GMKL
Sbjct: 77   FEAGERKTKKKNKNAKKTKKNYALE--DDMGSLFGDGITGKLPRFANKITLKNISPGMKL 134

Query: 138  WGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIV 197
            WGVVAEVNEKDL I LPGGLRGL RA++A DP+  NEI+  E   LP IFH+GQLVSC+V
Sbjct: 135  WGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVSCVV 194

Query: 198  LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
            LQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGLPSF
Sbjct: 195  LQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGLPSF 254

Query: 258  TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
            TGFLP+++ AEN  I++  G +LQGV+RSID+  KVVYLSSDPDT+SKCVTKDLKGISID
Sbjct: 255  TGFLPKSSQAEN--IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGISID 312

Query: 318  LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            LL+PGMMV+ RVQS  ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVNARI
Sbjct: 313  LLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVNARI 372

Query: 378  LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
            LF+DP++RAVGLTLNP+L++N+APP  VK GDIYD SKV+RVDRGLGLLL++PSTP STP
Sbjct: 373  LFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPASTP 432

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             YVT+ DVA+EEVRK+EKKYKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHSDVK
Sbjct: 433  TYVTLFDVADEEVRKMEKKYKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHSDVK 492

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            PGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVLG K
Sbjct: 493  PGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVLGCK 552

Query: 558  SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
            SKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP SE
Sbjct: 553  SKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAPSSE 612

Query: 618  LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
            LGL+PGC  S MYHVGQVVKCR+  S+PASRRINLSF++KPTR+SEDD+VKLGS+V GVV
Sbjct: 613  LGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINLSFIIKPTRISEDDMVKLGSVVGGVV 672

Query: 678  DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
            D VTP+A++V V AKGY KGTI TEHLADH  HA +MKS +KPGYEFDQLLVLD E +N 
Sbjct: 673  DRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEGNNF 732

Query: 738  LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            +LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K +D 
Sbjct: 733  ILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKVMDD 792

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
            QRA  S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA LQ
Sbjct: 793  QRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIAKLQ 852

Query: 858  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
             S    SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL   T E G
Sbjct: 853  LSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TAERG 909

Query: 918  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
            S +QA +LDVAK ERLVDLSLK  F+DR +E +SN QA KKKR+REA K+L  HQTVNAI
Sbjct: 910  STVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTVNAI 969

Query: 978  VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
            VEIVKENYL  S                      +KQFL+GQSVIA+VMALPS ST GRL
Sbjct: 970  VEIVKENYLASSF-------------------IARKQFLHGQSVIASVMALPSPSTVGRL 1010

Query: 1038 LLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            LL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HITEV
Sbjct: 1011 LLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHITEV 1070

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIGSKL 1154
             D+  NV+EN FSNF+IGQTV+ARI+AK+NK +   K+  WELSIKP MLT S E+ +KL
Sbjct: 1071 CDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVENKL 1128

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            +  E  +S GQRVTGYVYKV+NEW  LTISRH+KAQLF+LD++ EP+ELQEFQ+RF +GK
Sbjct: 1129 VDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFEVGK 1188

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
            AV+G+VLS NKEKKLLR+VL  F              N+   IH+GD +GGRISKIL GV
Sbjct: 1189 AVSGYVLSANKEKKLLRMVLHQFS-------------NLIPHIHKGDTLGGRISKILPGV 1235

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
            GGL+VQIGPHLYG+VHFTELK+  VSDPL           SGY EGQFVKCKVLEI  + 
Sbjct: 1236 GGLLVQIGPHLYGKVHFTELKDSWVSDPL-----------SGYHEGQFVKCKVLEIGHSE 1284

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
            +GT HV+LSL SSL+GM S NS             +EKI++L  +M+VQGYVKNVTSKGC
Sbjct: 1285 KGTVHVDLSLWSSLNGMHSPNS------------RVEKIDNLHSDMLVQGYVKNVTSKGC 1332

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            FI+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVEVTLKTS + +
Sbjct: 1333 FILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVEVTLKTSSATS 1392

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
              +SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+V
Sbjct: 1393 VQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMV 1432



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 98/469 (20%), Positives = 186/469 (39%), Gaps = 69/469 (14%)

Query: 141  VAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL 200
            + E+   +L +    G  G     +  D   +N IE    N     F +GQ VS  ++  
Sbjct: 1045 ITEIKPLELRLKFGIGFHGRVHITEVCD---ENVIENPFSN-----FRIGQTVSARIVAK 1096

Query: 201  DDDKKEIGKRKIW-LSLRLSLLYKGLSLET--------VQEGMVLTAYVKSIEDHGYIL- 250
             +  +  GK   W LS++  +L   + +E         +  G  +T YV  +E+    L 
Sbjct: 1097 ANKSENNGKNHQWELSIKPEMLTGSIEVENKLVDAEFRISTGQRVTGYVYKVENEWIWLT 1156

Query: 251  ---HFGLPSF---TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV--VYLSSDPDT 302
               H     F   T   P N L E      + G  + G V S ++ +K+  + L    + 
Sbjct: 1157 ISRHIKAQLFLLDTSCEP-NELQEFQK-RFEVGKAVSGYVLSANKEKKLLRMVLHQFSNL 1214

Query: 303  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 362
            +      D  G  I  ++PG+            G+++    +  G V    L+++     
Sbjct: 1215 IPHIHKGDTLGGRISKILPGV-----------GGLLVQIGPHLYGKVHFTELKDS----- 1258

Query: 363  WKND----YNQHKKVNARILFVDPTSRA---VGLTLNPYLLHNRAPPSHVKVGDIYDQSK 415
            W +D    Y++ + V  ++L +  + +    V L+L   L    +P S V+  D      
Sbjct: 1259 WVSDPLSGYHEGQFVKCKVLEIGHSEKGTVHVDLSLWSSLNGMHSPNSRVEKIDNLHSDM 1318

Query: 416  VVR------VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
            +V+        +G  +LL          A + ++++++  V K E+++  G  V  R+L 
Sbjct: 1319 LVQGYVKNVTSKGCFILLS-----RKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLS 1373

Query: 470  FRHLEGLATGILKASAFEGL----VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKA 524
               L       LK S+   +    V   S +  G ++ G +  V+S+G  +      +  
Sbjct: 1374 VEPLSRRVEVTLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVG 1433

Query: 525  LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVK 571
            LC +  +S+  I     K+K G  +  ++L V  +  RI++  K + +K
Sbjct: 1434 LCHISELSDDHISNIETKYKAGERVAAKILKVDEERHRISLGMKNSYIK 1482


>gi|359481849|ref|XP_002276633.2| PREDICTED: protein RRP5 homolog [Vitis vinifera]
          Length = 1879

 Score = 2094 bits (5426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1070/1490 (71%), Positives = 1238/1490 (83%), Gaps = 71/1490 (4%)

Query: 18   KFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
            K   ASK  FK   +Q N+AV ++ LAL  +DDVP FPRGGG  L+++E D I AEVDAE
Sbjct: 18   KLRGASKKPFKPRMRQ-NEAVPSESLALQMEDDVPDFPRGGGSLLSRQEHDAIRAEVDAE 76

Query: 78   FEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKL 137
            FEA ER   KKNK  KK  +  A E  DD+GSLFGDGI+GKLPR+ANKITLKNIS GMKL
Sbjct: 77   FEAGERKTKKKNKNAKKTKKNYALE--DDMGSLFGDGITGKLPRFANKITLKNISPGMKL 134

Query: 138  WGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIV 197
            WGVVAEVNEKDL I LPGGLRGL RA++A DP+  NEI+  E   LP IFH+GQLVSC+V
Sbjct: 135  WGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVSCVV 194

Query: 198  LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
            LQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGLPSF
Sbjct: 195  LQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGLPSF 254

Query: 258  TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
            TGFLP+++ A+ + I++  G +LQGV+RSID+  KVVYLSSDPDT+SKCVTKDLKGISID
Sbjct: 255  TGFLPKSSQADQN-IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGISID 313

Query: 318  LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            LL+PGMMV+ RVQS  ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVNARI
Sbjct: 314  LLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVNARI 373

Query: 378  LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
            LF+DP++RAVGLTLNP+L++N+APP  VK GDIYD SKV+RVDRGLGLLL++PSTP STP
Sbjct: 374  LFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPASTP 433

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             YVT               YKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHSDVK
Sbjct: 434  TYVT---------------YKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHSDVK 478

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            PGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVLG K
Sbjct: 479  PGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVLGCK 538

Query: 558  SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
            SKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP SE
Sbjct: 539  SKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAPSSE 598

Query: 618  LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
            LGL+PGC  S MYHVGQVVKCR+  S+PASRRINL           +D+VKLGS+V GVV
Sbjct: 599  LGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINL-----------NDMVKLGSVVGGVV 647

Query: 678  DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
            D VTP+A++V V AKGY KGTI TEHLADH  HA +MKS +KPGYEFDQLLVLD E +N 
Sbjct: 648  DRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEGNNF 707

Query: 738  LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            +LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K +D 
Sbjct: 708  ILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKVMDD 767

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
            QRA  S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA LQ
Sbjct: 768  QRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIAKLQ 827

Query: 858  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
             S    SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL   T E G
Sbjct: 828  LSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TAERG 884

Query: 918  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
            S +QA +LDVAK ERLVDLSLK  F+DR +E +SN QA KKKR+REA K+L  HQTVNAI
Sbjct: 885  STVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTVNAI 944

Query: 978  VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
            VEIVKENYLVLSLPEYN++IGYASVSDYNTQKF QKQFL+GQSVIA+VMALPS ST GRL
Sbjct: 945  VEIVKENYLVLSLPEYNYAIGYASVSDYNTQKFAQKQFLHGQSVIASVMALPSPSTVGRL 1004

Query: 1038 LLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            LL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HITEV
Sbjct: 1005 LLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHITEV 1064

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIGSKL 1154
             D+  NV+EN FSNF+IGQTV+ARI+AK+NK +   K+  WELSIKP MLT S E+ +KL
Sbjct: 1065 CDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVENKL 1122

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            +  E  +S GQRVTGYVYKV+NEW  LTISRH+KAQLF+LD++ EP+ELQEFQ+RF +GK
Sbjct: 1123 VDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFEVGK 1182

Query: 1215 AVTGHVLSINKEKKLLRLVLRPF--QDGISD-KTVDISN-------DNMQTFIHEGDIVG 1264
            AV+G+VLS NKEKKLLR+VL  F   +G  D K ++I N       +N+   IH+GD +G
Sbjct: 1183 AVSGYVLSANKEKKLLRMVLHQFSVSNGTLDGKVLNIDNQHCNPPIENLIPHIHKGDTLG 1242

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1324
            GRISKIL GVGGL+VQIGPHLYG+VHFTELK+  VSDPL           SGY EGQFVK
Sbjct: 1243 GRISKILPGVGGLLVQIGPHLYGKVHFTELKDSWVSDPL-----------SGYHEGQFVK 1291

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
            CKVLEI  + +GT HV+LSL SSL+GM S NS             +EKI++L  +M+VQG
Sbjct: 1292 CKVLEIGHSEKGTVHVDLSLWSSLNGMHSPNS------------RVEKIDNLHSDMLVQG 1339

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444
            YVKNVTSKGCFI+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVE
Sbjct: 1340 YVKNVTSKGCFILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVE 1399

Query: 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            VTLKTS + +  +SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+V
Sbjct: 1400 VTLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMV 1449



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 105/482 (21%), Positives = 195/482 (40%), Gaps = 72/482 (14%)

Query: 141  VAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL 200
            + E+   +L +    G  G     +  D   +N IE    N     F +GQ VS  ++  
Sbjct: 1039 ITEIKPLELRLKFGIGFHGRVHITEVCD---ENVIENPFSN-----FRIGQTVSARIVAK 1090

Query: 201  DDDKKEIGKRKIW-LSLRLSLLYKGLSLET--------VQEGMVLTAYVKSIEDHGYIL- 250
             +  +  GK   W LS++  +L   + +E         +  G  +T YV  +E+    L 
Sbjct: 1091 ANKSENNGKNHQWELSIKPEMLTGSIEVENKLVDAEFRISTGQRVTGYVYKVENEWIWLT 1150

Query: 251  ---HFGLPSF---TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 304
               H     F   T   P N L E      + G  + G V S ++ +K++ +     +VS
Sbjct: 1151 ISRHIKAQLFLLDTSCEP-NELQEFQK-RFEVGKAVSGYVLSANKEKKLLRMVLHQFSVS 1208

Query: 305  KCVTKDLKGISIDL---------LVP----GMMVSTRVQSILEN--GVMLSFLTYFTGTV 349
               T D K ++ID          L+P    G  +  R+  IL    G+++    +  G V
Sbjct: 1209 NG-TLDGKVLNIDNQHCNPPIENLIPHIHKGDTLGGRISKILPGVGGLLVQIGPHLYGKV 1267

Query: 350  DIFHLQNTFPTTNWKND----YNQHKKVNARILFVDPTSRA---VGLTLNPYLLHNRAPP 402
                L+++     W +D    Y++ + V  ++L +  + +    V L+L   L    +P 
Sbjct: 1268 HFTELKDS-----WVSDPLSGYHEGQFVKCKVLEIGHSEKGTVHVDLSLWSSLNGMHSPN 1322

Query: 403  SHVKVGDIYDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
            S V+  D      +V+        +G  +LL          A + ++++++  V K E++
Sbjct: 1323 SRVEKIDNLHSDMLVQGYVKNVTSKGCFILLS-----RKLDARILLANLSDGYVEKPERE 1377

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAFEGL----VFTHSDVKPGMVVKGKVIAVDSF 512
            +  G  V  R+L    L       LK S+   +    V   S +  G ++ G +  V+S+
Sbjct: 1378 FPIGKLVSGRVLSVEPLSRRVEVTLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESY 1437

Query: 513  GAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTL 569
            G  +      +  LC +  +S+  I     K+K G  +  ++L V  +  RI++  K + 
Sbjct: 1438 GLFITIDDTNMVGLCHISELSDDHISNIETKYKAGERVAAKILKVDEERHRISLGMKNSY 1497

Query: 570  VK 571
            +K
Sbjct: 1498 IK 1499


>gi|356533079|ref|XP_003535096.1| PREDICTED: protein RRP5 homolog [Glycine max]
          Length = 1885

 Score = 1878 bits (4864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 964/1504 (64%), Positives = 1183/1504 (78%), Gaps = 68/1504 (4%)

Query: 1    MAASSRKSQKKS-SKDGPKFNKASKNQFKNSKKQINDAVEA---QDLALPPDDDVPVFPR 56
            MA  S+K QKK+ S D PK +KASK  FK  K++ N AV A   + L+LP +D+VP FPR
Sbjct: 1    MAPHSKKPQKKNDSVDKPKIDKASKKIFKPKKREQNIAVAAAKSEALSLPLEDEVPDFPR 60

Query: 57   GGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGIS 116
            GG  S   R   +       EF A +     + KKK K    K+NE  DD GSL G+GI+
Sbjct: 61   GGEFSAKGRNDYD-------EFGAEDPSKKTRKKKKGKNASGKSNEAADDWGSLSGNGIT 113

Query: 117  GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE 176
            GKLPR  NKITL+NI+ GMKLWGVVAEVNEKDLV+ LPGGLRGL  A+DA+DPI D++IE
Sbjct: 114  GKLPRRVNKITLRNITPGMKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIE 173

Query: 177  ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
              E   L  +F VGQLVSC+VL+LDDDKKE G RKIWLSLRLSLL+K  +L+ VQEGMVL
Sbjct: 174  VGEI-FLSGVFCVGQLVSCVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVL 232

Query: 237  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
             AYVKSIEDHGYILHFGLP F GFLP+N+ A   G +VK G LLQG+VRSID+ RKVVYL
Sbjct: 233  AAYVKSIEDHGYILHFGLPFFMGFLPKNSSAGWGG-EVKIGKLLQGLVRSIDKVRKVVYL 291

Query: 297  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
            SSDPDT++K VTKDL+G+SIDLLVPGM+V+  V+SILENGVMLSFLTYFTGTVD+FHLQN
Sbjct: 292  SSDPDTITKSVTKDLRGLSIDLLVPGMLVNACVKSILENGVMLSFLTYFTGTVDLFHLQN 351

Query: 357  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKV 416
             +P  NWK+  ++ +KV +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKV
Sbjct: 352  IYPGKNWKDKCSESQKVVSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKV 411

Query: 417  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
            VRVDRGLGLLL++PS P  TPA+V+               YKEG+ VRVRILG R+LEG+
Sbjct: 412  VRVDRGLGLLLEVPSIPEPTPAFVS---------------YKEGNHVRVRILGLRYLEGI 456

Query: 477  ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
            ATG+LKASA E  VFTHSDVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI
Sbjct: 457  ATGVLKASALEEEVFTHSDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEI 516

Query: 537  VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
             KPGKKFKVGAELVFRVLG KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKI
Sbjct: 517  SKPGKKFKVGAELVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKI 576

Query: 597  EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            E HGCFVRFYNGVQGFAPRSELGL+PG +P ++Y+VGQ VKCR++S IPASRRINL    
Sbjct: 577  EVHGCFVRFYNGVQGFAPRSELGLEPGADPGTVYNVGQAVKCRVISCIPASRRINL---- 632

Query: 657  KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
                   +D+V LGSLVSG VD +T NAVVVYV A G+S+GTI  EHLADH   A +M S
Sbjct: 633  -------NDMVTLGSLVSGAVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHS 685

Query: 717  VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
            V+KPGY FDQLLVLD + +NL+LSAK SLI  AQQ+P+D + IHPNSVVHGY+CN+IE+G
Sbjct: 686  VLKPGYNFDQLLVLDVKGNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESG 745

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            CFVRFLG LTGFAPR+KA D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CS
Sbjct: 746  CFVRFLGHLTGFAPRNKAADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACS 805

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            STDASF+Q++FL+++KIA L+      S+ KW EGF IG V +GKV    D G+V+SFE 
Sbjct: 806  STDASFIQDYFLMDDKIARLEYCGSGASDTKWDEGFNIGMVAKGKVKAVEDVGLVISFEH 865

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
            ++DV+GFI ++QLAG  +ESGS+++A +LDV KA++LV+L+LK  FI+R +E++ +R   
Sbjct: 866  YNDVFGFIANYQLAGTILESGSIVEALVLDVGKADKLVELTLKPEFINRSKESSISR-TN 924

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
            KKKR+REASKDL +HQTVNA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+ 
Sbjct: 925  KKKRRREASKDLVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQ 984

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
            NGQSV+ATVMALPS  T+GRLLLL+  ++ET +SS +  KK S   VG+LV+AEIT+IK 
Sbjct: 985  NGQSVVATVMALPSPETSGRLLLLVDVVNETSSSSKRTKKKSSYK-VGTLVEAEITDIKT 1043

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFL 1135
            LEL+LKFG G +GRIHITEV     NV+EN FS++K+GQTVTARI+AK N+ D  +K   
Sbjct: 1044 LELKLKFGFGLYGRIHITEVY--YGNVLENPFSSYKVGQTVTARIVAKPNESDGNRKGSQ 1101

Query: 1136 WELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            WELS++P M+T  S+I    + E  +  IGQ V GYVYKV++EW  LTISR+++AQL+IL
Sbjct: 1102 WELSVRPEMVTGSSDIDD--VSENLEFKIGQCVAGYVYKVESEWVWLTISRNVRAQLYIL 1159

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKTV-DISN 1250
            DSA EPSEL++FQ R+H+G+ V+GH+LS+N EKKLLRLV+RPF     G S++ + ++ +
Sbjct: 1160 DSATEPSELEDFQNRYHVGQPVSGHILSVNMEKKLLRLVVRPFSTLSCGTSEEPLTNVVD 1219

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
             ++  ++HEGDI+GGR+SKIL GVGGL+VQ+GP  YG+VHFTEL +  V DP        
Sbjct: 1220 KDLTAYVHEGDILGGRVSKILPGVGGLLVQVGPRTYGKVHFTELADTWVPDP-------- 1271

Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
               LSGY E QFVKC VLE+S TV+GT HV+LSL SS   +S  ++      V+   K +
Sbjct: 1272 ---LSGYHEEQFVKCIVLEVSHTVKGTIHVDLSLGSSNVKLSQDSA------VNANSKCV 1322

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            EKIEDL P+MIV+GY+KNVTSKGCFIMLSRK+DAK+LLSNLS+ YV+ PEKEFP+GKLV 
Sbjct: 1323 EKIEDLHPDMIVKGYIKNVTSKGCFIMLSRKIDAKILLSNLSEQYVQEPEKEFPVGKLVI 1382

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            GRV SVEPLS RVEVTLK S +    +SEI +LS  HVGD+V G+IKRVES+GLFI I+N
Sbjct: 1383 GRVTSVEPLSNRVEVTLKMSTAPNIPKSEIIDLSKFHVGDVVSGRIKRVESFGLFIAIDN 1442

Query: 1491 TNLV 1494
            TN+V
Sbjct: 1443 TNMV 1446



 Score = 48.5 bits (114), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 152/342 (44%), Gaps = 54/342 (15%)

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQ----SCCSSTD----------ASFMQEH 846
            D    Y+VGQ V  +IL VN E   + L ++     SC +S +           +++ E 
Sbjct: 1170 DFQNRYHVGQPVSGHILSVNMEKKLLRLVVRPFSTLSCGTSEEPLTNVVDKDLTAYVHEG 1229

Query: 847  FLLEEKIAMLQSSKHNGSELKWVEGFII--GSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
             +L  +++ +         L  V G ++  G    GKVH          F E +D +   
Sbjct: 1230 DILGGRVSKI---------LPGVGGLLVQVGPRTYGKVH----------FTELADTW--- 1267

Query: 905  THHQLAGATVESGSVIQAAILDVA---KAERLVDLSLKTVFIDRFREANSNRQAQKKKRK 961
                L+G   E    ++  +L+V+   K    VDLSL +  +   +++  N  ++  ++ 
Sbjct: 1268 VPDPLSGYHEEQ--FVKCIVLEVSHTVKGTIHVDLSLGSSNVKLSQDSAVNANSKCVEKI 1325

Query: 962  REASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSV 1021
             +   D+ V   +  +    K  +++LS  + +  I  +++S+   Q+ P+K+F  G+ V
Sbjct: 1326 EDLHPDMIVKGYIKNVTS--KGCFIMLSR-KIDAKILLSNLSEQYVQE-PEKEFPVGKLV 1381

Query: 1022 IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 1081
            I  V ++   S   R+ + LK +S             S + VG +V   I  ++   L +
Sbjct: 1382 IGRVTSVEPLSN--RVEVTLK-MSTAPNIPKSEIIDLSKFHVGDVVSGRIKRVESFGLFI 1438

Query: 1082 KF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
                    G  HI+E++D++   +EN+ +N++ G+ V ARI+
Sbjct: 1439 AIDNTNMVGLCHISEISDNR---IENIEANYRAGERVKARIL 1477


>gi|449453908|ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sativus]
          Length = 1898

 Score = 1805 bits (4674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 922/1511 (61%), Positives = 1141/1511 (75%), Gaps = 72/1511 (4%)

Query: 1    MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
            MA  SRKSQ     DG KFNK SK  F NSKK+ ++  + + ++L  +DDVP FPRGGG 
Sbjct: 1    MAPPSRKSQ-----DGSKFNKHSKKPF-NSKKKTSETAKPETVSLQIEDDVPDFPRGGGG 54

Query: 61   SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
             ++Q + +++ AE D EF+  +  +  K  KK+    RK     DDL SL  +G+ G LP
Sbjct: 55   YMSQNKGEKVRAEGDKEFQNDDLKMTTKRGKKR----RKHPSNGDDLESLLNNGVVGNLP 110

Query: 121  RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED 180
            +YANKITLKNI+  MK WGVVAEVN+KDLVI LPGGLRGL  AA+A DPIL+ E+E  E 
Sbjct: 111  KYANKITLKNINPRMKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEH 170

Query: 181  NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
            +LLP +FHVGQLV C+VL++DDDKKE GKRKIWLSLRLS+LYK  +L+ +QEGMVLT+YV
Sbjct: 171  DLLPVMFHVGQLVPCVVLKVDDDKKESGKRKIWLSLRLSMLYKDFTLDLLQEGMVLTSYV 230

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
            KSIEDHGYILHFGL SFTGFLP+   +    + +  G LLQ VVRSID+TRKVVY SSD 
Sbjct: 231  KSIEDHGYILHFGLTSFTGFLPKTKQSGKKSL-LHVGQLLQCVVRSIDKTRKVVYFSSDQ 289

Query: 301  DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
            D VS  V KDLKGISIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F +
Sbjct: 290  DIVSSSVAKDLKGISIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHS 349

Query: 361  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
            +NWK+ YNQ+ K+NARILF+DP++RAVGLTL P+L+ N+A P HV++GDIYD +KVVRVD
Sbjct: 350  SNWKDFYNQNMKMNARILFIDPSTRAVGLTLIPHLVRNKAAPPHVRIGDIYDSAKVVRVD 409

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
            RG GLLL++PS+P STP +V+               +KEGS VRVRILGFRHLEGLA G 
Sbjct: 410  RGFGLLLEVPSSPESTPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGT 454

Query: 481  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
            LKASAFEG VF++SDVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEI KP 
Sbjct: 455  LKASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPR 514

Query: 541  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            KKFKVGAEL+FRVLG KSKRITVTHKKTLVKSKL +LSSYA+AT  L+THGWITKIEKHG
Sbjct: 515  KKFKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHG 574

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
            CFVRFYNGVQGFAPR ELG++PG +PSS YH+GQV+KCRI SS  +S+RI+L        
Sbjct: 575  CFVRFYNGVQGFAPRFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISL-------- 626

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               +  V+LG +V+GVVD +T   V +Y+    YS+G I TEHL+DH  HA+ +KSV+KP
Sbjct: 627  ---NTKVELGCIVTGVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKP 683

Query: 721  GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            GY+FDQLLVL  E  +L+LSAK SLI  A  LPSD+SH++P S++HG++CNIIE GCFVR
Sbjct: 684  GYQFDQLLVLAIEGESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVR 743

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            FLGRLTGF+PR+KA+  Q+  L +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDA
Sbjct: 744  FLGRLTGFSPRNKAMQDQKLYLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDA 803

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            SF+QE F  EEKIA LQS      E  W E F IGSV+EG+V E  D GV +SFE++ DV
Sbjct: 804  SFIQEFFSTEEKIAKLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDV 859

Query: 901  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
            +GFI  H L+G+ VE+GS IQAA+LDV+K ERLVDLSLK   +D++   +S+RQ  +KKR
Sbjct: 860  FGFIALHGLSGSIVETGSTIQAAVLDVSKTERLVDLSLKPELVDKW-GGSSSRQTNRKKR 918

Query: 961  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 1020
            K EA KDL ++QTV+ +VE VKENYLVLSLPE+ H+IGYAS  DYNTQ+  QK F  GQS
Sbjct: 919  KAEAPKDLEMNQTVHTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQS 978

Query: 1021 VIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 1079
            V+ATV+ALP  ST GRLLLLLK+ISE   T  SKR++K SS +VGSLV AEI +++PLE+
Sbjct: 979  VVATVVALPCPSTFGRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEIIDVQPLEM 1038

Query: 1080 RLKFGIGFHGRIHITE----VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSF 1134
            RLKFG+G  GRIH+TE    V++      E  FSNF++GQTV ARI+A++N    K K +
Sbjct: 1039 RLKFGVGLRGRIHVTEFCAQVSNTPDEASEAPFSNFRVGQTVVARIVAEANHSASKGKGY 1098

Query: 1135 LWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
            LWELS+KP +L   S +G +++ E+   SIGQRVT YV  V+ +WA L ++R + AQLFI
Sbjct: 1099 LWELSVKPEVLKDFSAVGGEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFI 1158

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR---PFQDGISD----KTV 1246
            LDS+ EPSELQEF + F++GKAV+G++ +I  EKK+LRLVL        G SD    K  
Sbjct: 1159 LDSSSEPSELQEFSKHFYVGKAVSGYISNIIGEKKILRLVLHHLSAISSGKSDEENSKIS 1218

Query: 1247 DISNDNMQTFI---HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
            ++  D  +  I   +EGDIVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL +  V DPL
Sbjct: 1219 NLPTDVCKKVICHLNEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPL 1278

Query: 1304 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1363
                       SGY EGQFVKCKV+EI+  V+GT H++LSLRSS   +   N    + + 
Sbjct: 1279 -----------SGYKEGQFVKCKVIEITHAVKGTTHIDLSLRSSAGILCQKNIECSNHEN 1327

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
               G+   KIED+  +M VQGYVKN++ KGCFIMLSR L+AK+LLSNLSDGY+++PEKEF
Sbjct: 1328 IASGR--VKIEDIHAHMEVQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEF 1385

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
            P GKLV GR+LSVEPLSKRVEVTLK+     A +   N+L +   GDI+ G+IKRVES+G
Sbjct: 1386 PTGKLVRGRILSVEPLSKRVEVTLKSVTETGALRGSNNDLRSFSAGDIISGRIKRVESFG 1445

Query: 1484 LFITIENTNLV 1494
            LFI+I+NT++V
Sbjct: 1446 LFISIDNTDVV 1456


>gi|240255326|ref|NP_187803.4| RNA binding protein [Arabidopsis thaliana]
 gi|332641610|gb|AEE75131.1| RNA binding protein [Arabidopsis thaliana]
          Length = 1896

 Score = 1705 bits (4415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/1472 (60%), Positives = 1120/1472 (76%), Gaps = 66/1472 (4%)

Query: 39   EAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER 98
            EA  L L   +DVP FPRGGG SL+++ER++++ EVDAEF+A ER      K K  K+++
Sbjct: 39   EAMALQL---EDVPDFPRGGGTSLSKKEREKLYEEVDAEFDADER---VSKKSKGGKSKK 92

Query: 99   KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
            +    +DDLG LFG G+ GK PRYANKIT KNIS GMKL GVV EVN+KD+VI LPGGLR
Sbjct: 93   RIPSDLDDLGLLFGGGLHGKRPRYANKITTKNISPGMKLLGVVTEVNQKDIVISLPGGLR 152

Query: 159  GLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
            GL RA++  D   D  IE +E+ LL  IF VGQLV CIVL+LDDDKKE GKRKIWLSLRL
Sbjct: 153  GLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVPCIVLELDDDKKEAGKRKIWLSLRL 211

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-RNNLAENSGIDVKPG 277
            SLL+KG S ++ Q GMV +A VKSIEDHG ILHFGLPS TGF+   ++  + SG+  K G
Sbjct: 212  SLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGLPSITGFIEISDDGNQESGM--KTG 269

Query: 278  LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
             L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG+
Sbjct: 270  QLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSGMSFDLLIPGMMVNARVQSVLENGI 329

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
            +  FLTYF GTVD+FHL+N     +WK++YNQ+K VNARILF+DP+SRAVGLTL+P+++ 
Sbjct: 330  LFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVC 389

Query: 398  NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
            N+APP HV  GDI+D++KVVR+D+  GLLL++PS P  TPAYV+               +
Sbjct: 390  NKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKPTPTPAYVS---------------F 433

Query: 458  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
            KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIVQ
Sbjct: 434  KEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQ 493

Query: 518  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAIL 577
            F GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL IL
Sbjct: 494  FSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPIL 553

Query: 578  SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
            SSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVK
Sbjct: 554  SSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVK 613

Query: 638  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
            CR+ S++  ++RI L           +D +KLGS+VSG++D +T  AV+V V +K   KG
Sbjct: 614  CRVTSAVHGTQRITL-----------NDSIKLGSIVSGIIDTITSQAVIVRVKSKSVVKG 662

Query: 698  TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            TI  EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI  A++LPSD +
Sbjct: 663  TISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDFN 722

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D  +AD+S++++VGQSVR+NI+
Sbjct: 723  QLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIV 782

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            DVN E  RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS    S+  WVE F IGS+
Sbjct: 783  DVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSL 842

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            I+G + E ND GVVV+F+  ++V GFI  H + GAT+  GSV+ A +LD+++AERLVDLS
Sbjct: 843  IKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDLS 902

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            L+   ++   +  SN  + KKKRKR  SK+L VHQ V+A+VEIVKE +LVLS+PE+ ++I
Sbjct: 903  LRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTI 960

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAK 1056
            GYASVSDYNTQK P KQF  GQSV+A+V A+ +  T+GRLLLLL ++S T ETS SKRAK
Sbjct: 961  GYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRAK 1020

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
            KKSS +VGS+V AEITEIKP ELR+ FG  F GRIHITEV  + ++  +  F+ F++GQ+
Sbjct: 1021 KKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQS 1080

Query: 1117 VTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            ++AR++AK    D+KK+ LWELS+KP+ML   SE       E+ + + GQ V GYVYKVD
Sbjct: 1081 ISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKVD 1140

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             EW  L +SR++ A++FILD++ +  EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV R
Sbjct: 1141 KEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQR 1200

Query: 1236 PF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
            P         +G   KT      I  D+   FIHEGDI+GGRISKIL GVGGL VQ+GP+
Sbjct: 1201 PLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGPY 1260

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            ++GRVHFTE+ +  V DP           L G+ EGQFVKCKVLEIS + +GT+ +ELSL
Sbjct: 1261 VFGRVHFTEINDSWVPDP-----------LDGFREGQFVKCKVLEISSSSKGTWQIELSL 1309

Query: 1345 RSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
            R+SLDGMSS +  S DL  + D   K  E+IEDLSP+M VQGYVKN  SKGCFI+LSR +
Sbjct: 1310 RTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRTV 1368

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1462
            +AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++    +SE  +
Sbjct: 1369 EAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESYD 1428

Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            L  LHVGD++ G+I+RVE +GLFI I+ T +V
Sbjct: 1429 LKKLHVGDMISGRIRRVEPFGLFIDIDQTGMV 1460



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            D+ P M V+G V    S G  +     V+A   L ++ +  + +P K+F VG  +  RVL
Sbjct: 1341 DLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVL 1400

Query: 555  GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH------GWITKIEKHGCFVRF- 605
             V+  SKRI VT K      +       +E+ D    H      G I ++E  G F+   
Sbjct: 1401 NVEPLSKRIEVTLKTVNAGGR-----PKSESYDLKKLHVGDMISGRIRRVEPFGLFIDID 1455

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMM----- 656
              G+ G    S+L  D      + Y  G+ V+ +I+      +RI+L    S++M     
Sbjct: 1456 QTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDD 1515

Query: 657  KPTRVSEDD 665
            K   +SED+
Sbjct: 1516 KAQPLSEDN 1524


>gi|356498361|ref|XP_003518021.1| PREDICTED: protein RRP5 homolog [Glycine max]
          Length = 2174

 Score = 1694 bits (4386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 866/1348 (64%), Positives = 1057/1348 (78%), Gaps = 68/1348 (5%)

Query: 13   SKDGPKFNKASKNQFKNSKKQINDAVEA---QDLALPPDDDVPVFPRGGGHSLTQRERDE 69
            S D PK +KASK  FK  K++ NDAV A   + L+L  +D+VP FPRGG  S   R    
Sbjct: 150  SVDKPKIDKASKKIFKPKKREQNDAVVAAKSEALSLQLEDEVPDFPRGGEFSAKGR---- 205

Query: 70   IHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLK 129
              ++ D EF A +     + KKK +    K+NE  DD GSL GDGI+GKLPR  N+ITLK
Sbjct: 206  --SDYD-EFSAEDPSRKTRKKKKGRSASSKSNEGADDWGSLSGDGITGKLPRRVNRITLK 262

Query: 130  NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 189
            NI+ GMKLWGVVAEVNEKDLV+ LPGGLRGL  A+DA+DPI D++IE  E   L  +F V
Sbjct: 263  NITPGMKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIEVGEI-FLSGVFCV 321

Query: 190  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
            GQLVSC+VL+LDDDKKE G RKIWLSLRLSLL+K  +L+ VQEGMVL AYVKSIEDHGYI
Sbjct: 322  GQLVSCVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVLAAYVKSIEDHGYI 381

Query: 250  LHFGLPSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
            LHFGLPSF GFLP+N+ A + S   +K G LLQG+VR+ID+ RKVVYLSSDPDT+SK VT
Sbjct: 382  LHFGLPSFLGFLPKNSSAGKKSSNYLKIGKLLQGLVRTIDKVRKVVYLSSDPDTMSKSVT 441

Query: 309  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
            KDL+G+SIDLLVPGM+V+ RV+SILENGVMLSFLTYFTGTVD+FHLQN +P TNWK+  +
Sbjct: 442  KDLRGLSIDLLVPGMLVNARVKSILENGVMLSFLTYFTGTVDLFHLQNIYPGTNWKDKCS 501

Query: 369  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
            + +KV +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKVVRVDRGLGLLL+
Sbjct: 502  ESQKVVSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKVVRVDRGLGLLLE 561

Query: 429  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
            +PS P  TPA+V+               YKEG+ VRVRILG R+LEG+ATG+LKASA E 
Sbjct: 562  VPSIPEPTPAFVS---------------YKEGNRVRVRILGLRYLEGIATGVLKASALEE 606

Query: 489  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
             VFTHSDVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI KPGKKFKVGAE
Sbjct: 607  EVFTHSDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAE 666

Query: 549  LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            LVFRVLG KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKIE HGCFVRFYNG
Sbjct: 667  LVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYNG 726

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            VQGFAPRSELGL+PG +P ++Y+VGQVVKCR++S IPASRRINL           +D+V 
Sbjct: 727  VQGFAPRSELGLEPGADPGTVYNVGQVVKCRVISCIPASRRINL-----------NDMVT 775

Query: 669  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
            LGSLVSGVVD +T NAVVVYV A G+S+GTI  EHLADH   A +M S +KPGY FDQLL
Sbjct: 776  LGSLVSGVVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHSRLKPGYNFDQLL 835

Query: 729  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            VLD + +NL+LSAK SLI  AQQ+P+D + IHPNSVVHGY+CN+IE+GCFVRFLG LTGF
Sbjct: 836  VLDVKGNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESGCFVRFLGHLTGF 895

Query: 789  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
            APR+KA D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CSSTDASF+Q++FL
Sbjct: 896  APRNKAADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACSSTDASFIQDYFL 955

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 908
            +++KIA LQ      S+ KW EGF IG V +GKV +  D G+ +SFE+H+DV+GFI ++Q
Sbjct: 956  MDDKIAKLQYWGSGASDSKWDEGFNIGMVAKGKVKDVEDVGLAISFEKHNDVFGFIANYQ 1015

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            LAG  +ESGSV++A +LDVAKA++LV+L+LK  FI+R +E+ S     KKKR+REASKDL
Sbjct: 1016 LAGTILESGSVVEALVLDVAKADKLVELTLKPEFINRSKES-STSHTNKKKRRREASKDL 1074

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
             +HQTVNA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+ NGQSV+ATVMAL
Sbjct: 1075 VLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQNGQSVVATVMAL 1134

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
            PS  T+GRLLLL   ++ T +S   + K      VG+LV+AEIT+IK LEL+LKFG G H
Sbjct: 1135 PSPETSGRLLLLPNEVNGTSSSKRTKKKSSYK--VGTLVEAEITDIKTLELKLKFGFGLH 1192

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFLWELSIKPSMLT- 1146
            GRIHITEV +   +V+EN FS +K+GQTVTARI+AK N+ D  +K   WELS++  M+T 
Sbjct: 1193 GRIHITEVQN--GSVLENPFSCYKVGQTVTARIVAKPNESDGNRKGSQWELSVRSEMVTG 1250

Query: 1147 ---VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
               + ++   L F+     IGQ V GYVYKV++EW  LTISR+++AQL+ILDSA EPSEL
Sbjct: 1251 SSDIDDVSENLEFK-----IGQCVAGYVYKVESEWIWLTISRNVRAQLYILDSAIEPSEL 1305

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKT-VDISNDNMQTFIHE 1259
            ++FQ R+H+G+ V+GHVLS+N EKKLLRLV+RPF     G S++  +++ +  +    HE
Sbjct: 1306 EDFQNRYHVGQPVSGHVLSVNMEKKLLRLVVRPFSTLPCGTSEEPHINVVDKGLTAHFHE 1365

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDI+GGR+SKIL  VGGL+VQ+GP  YG+VHFTEL +  V DPL           SGY E
Sbjct: 1366 GDILGGRVSKILPSVGGLLVQVGPRTYGKVHFTELADTLVPDPL-----------SGYHE 1414

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSS 1347
            GQFVKC VLE+S TV+GT HV+LSLRSS
Sbjct: 1415 GQFVKCVVLEVSHTVKGTIHVDLSLRSS 1442



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 108/127 (85%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            K +EKIEDL P+MIV+GY+KNVT KGCFIMLSRK+DAK+LLSNLS+ YV+  EKEFPIGK
Sbjct: 1609 KCVEKIEDLHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGK 1668

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
            LV GRV+SVEPLS RVEVTLKTS      +SEI +LS  HVGD++ G+IKRVES+GLFI 
Sbjct: 1669 LVIGRVISVEPLSNRVEVTLKTSTDPNIPKSEIIDLSKFHVGDVISGRIKRVESFGLFIA 1728

Query: 1488 IENTNLV 1494
            I+NTN+V
Sbjct: 1729 IDNTNMV 1735



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 117/515 (22%), Positives = 217/515 (42%), Gaps = 107/515 (20%)

Query: 1018 GQSVIATVMALPSSSTAGRLLLLLK--AISETETS--------------------SSKRA 1055
            GQSV + +  +  SS  GR+ L LK  A S T+ S                     +  +
Sbjct: 916  GQSVRSNISNV--SSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIAKLQYWGSGASDS 973

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI-- 1113
            K    +++G + + ++ +++ + L + F               +K N V    +N+++  
Sbjct: 974  KWDEGFNIGMVAKGKVKDVEDVGLAISF---------------EKHNDVFGFIANYQLAG 1018

Query: 1114 -----GQTVTARI--IAKSNKPDMKKSFLWELSIKPSML------TVSEIGSKLLFEEC- 1159
                 G  V A +  +AK++K       L EL++KP  +      + S    K    E  
Sbjct: 1019 TILESGSVVEALVLDVAKADK-------LVELTLKPEFINRSKESSTSHTNKKKRRREAS 1071

Query: 1160 -DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-QRRFHIGKAVT 1217
             D+ + Q V   V  V   + +L+I  +     +   S Y     Q F  +++  G++V 
Sbjct: 1072 KDLVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNA---QRFPHKQYQNGQSVV 1128

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              V+++   +   RL+L P +    + T        ++    G +V   I+ I +    L
Sbjct: 1129 ATVMALPSPETSGRLLLLPNE---VNGTSSSKRTKKKSSYKVGTLVEAEITDIKTL--EL 1183

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
             ++ G  L+GR+H TE++N  V +          +P S Y  GQ V  +++       G 
Sbjct: 1184 KLKFGFGLHGRIHITEVQNGSVLE----------NPFSCYKVGQTVTARIVAKPNESDGN 1233

Query: 1338 ---FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                  ELS+RS +   SS        D+D   ++LE          V GYV  V S+  
Sbjct: 1234 RKGSQWELSVRSEMVTGSS--------DIDDVSENLE----FKIGQCVAGYVYKVESEWI 1281

Query: 1395 FIMLSRKLDAK--VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK---T 1449
            ++ +SR + A+  +L S +    +E  +  + +G+ V+G VLSV    K + + ++   T
Sbjct: 1282 WLTISRNVRAQLYILDSAIEPSELEDFQNRYHVGQPVSGHVLSVNMEKKLLRLVVRPFST 1341

Query: 1450 SDSRTASQSEINNL-----SNLHVGDIVIGQIKRV 1479
                T+ +  IN +     ++ H GDI+ G++ ++
Sbjct: 1342 LPCGTSEEPHINVVDKGLTAHFHEGDILGGRVSKI 1376



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
            P  + V    SK + +  D+     V GY+  V  +   + +SR + A+  IL S     
Sbjct: 1598 PKSIVVRNANSKCVEKIEDLHPDMIVKGYIKNVTPKGCFIMLSRKIDAK--ILLSNLSEQ 1655

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--VDISNDNMQTFIHE 1259
             +QE ++ F IGK V G V+S+      + + L+   D    K+  +D+S        H 
Sbjct: 1656 YVQELEKEFPIGKLVIGRVISVEPLSNRVEVTLKTSTDPNIPKSEIIDLSK------FHV 1709

Query: 1260 GDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            GD++ GRI ++ S   GL + I   ++ G  H +E+ +  + +  + Y  G+
Sbjct: 1710 GDVISGRIKRVES--FGLFIAIDNTNMVGLCHVSEISDNRIENIEANYRAGE 1759



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 31/192 (16%)

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            +HP+ +V GY+ N+   GCF+    ++      S   +    +L K + +G+ V   ++ 
Sbjct: 1617 LHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGKLVIGRVIS 1676

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
            V   + R+ ++LK    +STD +  +                   SE+  +  F +G VI
Sbjct: 1677 VEPLSNRVEVTLK----TSTDPNIPK-------------------SEIIDLSKFHVGDVI 1713

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 931
             G++     FG+ ++  +++++ G     +++   +E       +G  + A IL V +  
Sbjct: 1714 SGRIKRVESFGLFIAI-DNTNMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEER 1772

Query: 932  RLVDLSLKTVFI 943
              + L +K  ++
Sbjct: 1773 HRISLGMKNSYM 1784



 Score = 47.8 bits (112), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            D+ P M+VKG +  V   G  +     + A   L ++SE  + +  K+F +G  ++ RV+
Sbjct: 1616 DLHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGKLVIGRVI 1675

Query: 555  GVK--SKRITVTHKKT----LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 607
             V+  S R+ VT K +    + KS++  LS +       +  G I ++E  G F+   N 
Sbjct: 1676 SVEPLSNRVEVTLKTSTDPNIPKSEIIDLSKFHVGD---VISGRIKRVESFGLFIAIDNT 1732

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
             + G    SE+  +      + Y  G+ V  RI+       RI+L   MK + + ++ ++
Sbjct: 1733 NMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEERHRISLG--MKNSYMRDETML 1790

Query: 668  KLGS 671
            ++ S
Sbjct: 1791 QIPS 1794



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P M+V+  + +V S G  + +   + A   L ++S+  +  P K+F +G  +  RVL
Sbjct: 613  DVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAELVFRVL 672

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              +  SKRV VT K    +T  +S+   I++ ++   G I  G I ++E +G F+   N
Sbjct: 673  GCK--SKRVTVTHK----KTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYN 725



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 23/145 (15%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            I  + PN +V GY+ N+   GCF+     L      +  +D    +  + + IG+ V   
Sbjct: 863  INQIHPNSVVHGYICNLIESGCFVRFLGHLTGFAPRNKAADDQKSNILEAYYIGQSVRSN 922

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNL-----------------------SNLHVG 1469
            + +V   + RV ++LK +   +   S I +                           ++G
Sbjct: 923  ISNVSSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIAKLQYWGSGASDSKWDEGFNIG 982

Query: 1470 DIVIGQIKRVESYGLFITIENTNLV 1494
             +  G++K VE  GL I+ E  N V
Sbjct: 983  MVAKGKVKDVEDVGLAISFEKHNDV 1007


>gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
          Length = 1765

 Score = 1638 bits (4242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 834/1376 (60%), Positives = 1052/1376 (76%), Gaps = 63/1376 (4%)

Query: 135  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 194
            MKL GVV EVN+KD+VI LPGGLRGL RA++  D   D  IE +E+ LL  IF VGQLV 
Sbjct: 1    MKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVP 59

Query: 195  CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
            CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 60   CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 119

Query: 255  PSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 313
            PS TGF+   ++  + SG+  K G L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G
Sbjct: 120  PSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSG 177

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            +S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL+N     +WK++YNQ+K V
Sbjct: 178  MSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTV 237

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
            NARILF+DP+SRAVGLTL+P+++ N+APP HV  GDI+D++KVVR+D+  GLLL++PS P
Sbjct: 238  NARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKP 296

Query: 434  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
              TPAY    D A +EV KLEKK+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTH
Sbjct: 297  TPTPAYTY--DAAGDEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTH 354

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            SDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRV
Sbjct: 355  SDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRV 414

Query: 554  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
            LG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF 
Sbjct: 415  LGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFV 474

Query: 614  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 673
            PR ELGL+PG +P S++HVG+VVKCR+ S++  ++RI LSFM+KP+ VSEDD +KLGS+V
Sbjct: 475  PRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGSIV 534

Query: 674  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
            SG++D +T  AV+V V +K   KGTI  EHLADH E A ++ S+++PGYE D+LLVLD E
Sbjct: 535  SGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIE 594

Query: 734  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
             +N+ LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSK
Sbjct: 595  GNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSK 654

Query: 794  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 655  AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 714

Query: 854  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 715  SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 774

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 775  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 832

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 833  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 892

Query: 1034 AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                      
Sbjct: 893  SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 930

Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1151
               VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 931  ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 985

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 986  DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 1045

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1260
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 1046 IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 1105

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQ          
Sbjct: 1106 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQ---------- 1155

Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSP 1378
             FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP
Sbjct: 1156 -FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSP 1213

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
            +M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEP
Sbjct: 1214 DMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEP 1273

Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            LSKR+EVTLKT ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T +V
Sbjct: 1274 LSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMV 1329



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            D+ P M V+G V    S G  +     V+A   L ++ +  + +P K+F VG  +  RVL
Sbjct: 1210 DLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVL 1269

Query: 555  GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH------GWITKIEKHGCFVRF- 605
             V+  SKRI VT K      +       +E+ D    H      G I ++E  G F+   
Sbjct: 1270 NVEPLSKRIEVTLKTVNAGGR-----PKSESYDLKKLHVGDMISGRIRRVEPFGLFIDID 1324

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMM----- 656
              G+ G    S+L  D      + Y  G+ V+ +I+      +RI+L    S++M     
Sbjct: 1325 QTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDD 1384

Query: 657  KPTRVSEDD 665
            K   +SED+
Sbjct: 1385 KAQPLSEDN 1393


>gi|12322020|gb|AAG51058.1|AC069473_20 rRNA biogenesis protein, putative, 3' partial; 75505-85642
            [Arabidopsis thaliana]
          Length = 1396

 Score = 1633 bits (4229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 851/1409 (60%), Positives = 1072/1409 (76%), Gaps = 67/1409 (4%)

Query: 39   EAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER 98
            EA  L L   +DVP FPRGGG SL+++ER++++ EVDAEF+A ER      K K  K+++
Sbjct: 39   EAMALQL---EDVPDFPRGGGTSLSKKEREKLYEEVDAEFDADER---VSKKSKGGKSKK 92

Query: 99   KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
            +    +DDLG LFG G+ GK PRYANKIT KNIS GMKL GVV EVN+KD+VI LPGGLR
Sbjct: 93   RIPSDLDDLGLLFGGGLHGKRPRYANKITTKNISPGMKLLGVVTEVNQKDIVISLPGGLR 152

Query: 159  GLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
            GL RA++  D   D  IE +E+ LL  IF VGQLV CIVL+LDDDKKE GKRKIWLSLRL
Sbjct: 153  GLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVPCIVLELDDDKKEAGKRKIWLSLRL 211

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-RNNLAENSGIDVKPG 277
            SLL+KG S ++ Q GMV +A VKSIEDHG ILHFGLPS TGF+   ++  + SG+  K G
Sbjct: 212  SLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGLPSITGFIEISDDGNQESGM--KTG 269

Query: 278  LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
             L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG+
Sbjct: 270  QLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSGMSFDLLIPGMMVNARVQSVLENGI 329

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
            +  FLTYF GTVD+FHL+N     +WK++YNQ+K VNARILF+DP+SRAVGLTL+P+++ 
Sbjct: 330  LFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVC 389

Query: 398  NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
            N+APP HV  GDI+D++KVVR+D+  GLLL++PS P  TPAYV+  D A +EV KLEKK+
Sbjct: 390  NKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKPTPTPAYVSTYDAAGDEVTKLEKKF 448

Query: 458  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
            KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIVQ
Sbjct: 449  KEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQ 508

Query: 518  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAIL 577
            F GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL IL
Sbjct: 509  FSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPIL 568

Query: 578  SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
            SSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVK
Sbjct: 569  SSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVK 628

Query: 638  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
            CR+ S++  ++RI LSFM+KP+ VSEDD +KLGS+VSG++D +T  AV+V V +K   KG
Sbjct: 629  CRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGSIVSGIIDTITSQAVIVRVKSKSVVKG 688

Query: 698  TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            TI  EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI  A++LPSD +
Sbjct: 689  TISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDFN 748

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D  +AD+S++++VGQSVR+NI+
Sbjct: 749  QLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIV 808

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            DVN E  RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS    S+  WVE F IGS+
Sbjct: 809  DVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSL 868

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            I+G + E ND GVVV+F+  ++V GFI  H + GAT+  GSV+ A +LD+++AERLVDLS
Sbjct: 869  IKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDLS 928

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            L+   ++   +  SN  + KKKRKR  SK+L VHQ V+A+VEIVKE +LVLS+PE+ ++I
Sbjct: 929  LRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTI 986

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAK 1056
            GYASVSDYNTQK P KQF  GQSV+A+V A+ +  T+GRLLLLL ++S T ETS SKRAK
Sbjct: 987  GYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRAK 1046

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
            KKSS +VGS+V AE                         VND  ++  +  F+ F++GQ+
Sbjct: 1047 KKSSCEVGSVVHAE-------------------------VND--ASTSDEPFAKFRVGQS 1079

Query: 1117 VTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            ++AR++AK    D+KK+ LWELS+KP+ML   SE       E+ + + GQ V GYVYKVD
Sbjct: 1080 ISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKVD 1139

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             EW  L +SR++ A++FILD++ +  EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV R
Sbjct: 1140 KEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQR 1199

Query: 1236 PF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
            P         +G   KT      I  D+   FIHEGDI+GGRISKIL GVGGL VQ+GP+
Sbjct: 1200 PLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGPY 1259

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            ++GRVHFTE+ +  V DP           L G+ EGQFVKCKVLEIS + +GT+ +ELSL
Sbjct: 1260 VFGRVHFTEINDSWVPDP-----------LDGFREGQFVKCKVLEISSSSKGTWQIELSL 1308

Query: 1345 RSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
            R+SLDGMSS +  S DL  + D   K  E+IEDLSP+M VQGYVKN  SKGCFI+LSR +
Sbjct: 1309 RTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRTV 1367

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            +AKV LSNL D +V+ PEKEFP+GKLV G
Sbjct: 1368 EAKVRLSNLCDTFVKEPEKEFPVGKLVTG 1396



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P M+ +  V +V + G  +  S  L A   L ++S+  V  P K+F +G  +  RVL
Sbjct: 486  DVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVL 545

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIEN 1490
              +  SKR+ VT K    +T  +S++  LS   +   G +  G I ++E +G F+   N
Sbjct: 546  GCK--SKRITVTYK----KTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYN 598



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L PN +V GYV N+   GCF+    +L      S   D       + F +G+ V   ++ 
Sbjct: 750  LQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIVD 809

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINN-------LSNLHVGDIVIGQIKRVESYGLFITI 1488
            V     R+ ++LK S   +   S +         +S+L   DI       VE + +   I
Sbjct: 810  VNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSLI 869

Query: 1489 ENT 1491
            + T
Sbjct: 870  KGT 872


>gi|297833988|ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330716|gb|EFH61135.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1843

 Score = 1534 bits (3971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 778/1275 (61%), Positives = 978/1275 (76%), Gaps = 58/1275 (4%)

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 294
            V +A VKS+EDHGYILHFGLPS +GF+  +N      + +K G L+QGVV  IDR RKVV
Sbjct: 169  VFSANVKSVEDHGYILHFGLPSISGFIEISNDGNQESV-MKTGQLIQGVVTKIDRDRKVV 227

Query: 295  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            +LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL
Sbjct: 228  HLSSDPDSVAKCLTKDLNGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHL 287

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
            +N     +WK++YNQ+K VNARILF+DP+SRAVGLTLNP+L+ N+APP HV  GDI+D++
Sbjct: 288  KNPLSNKSWKDEYNQNKMVNARILFIDPSSRAVGLTLNPHLVCNKAPPLHVFSGDIFDEA 347

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            KVVR+D+  GLLL++PS PV  PAY++               +KEG+ +RVRILG + +E
Sbjct: 348  KVVRIDKS-GLLLELPSKPVPNPAYIS---------------FKEGNHIRVRILGLKQME 391

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
            GLA G LK SAFEG VFTHSDV+PGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEF
Sbjct: 392  GLAIGTLKESAFEGPVFTHSDVRPGMVTKAKVISVDTFGAIVQFAGGLKAMCPLRHMSEF 451

Query: 535  EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
            E++KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWIT
Sbjct: 452  EVMKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWIT 511

Query: 595  KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            KIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVKCR+ S++  SRRI L  
Sbjct: 512  KIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGSRRITL-- 569

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
                     +D +KLGS+VSG+VD +T  AV+V V +KG  KGTI TEHLADH + A +M
Sbjct: 570  ---------NDSIKLGSIVSGIVDSITSQAVIVRVKSKGVLKGTISTEHLADHHDQAKLM 620

Query: 715  KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
             S+++PGYE D+LLVLD E +NL LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE
Sbjct: 621  MSLLRPGYELDKLLVLDIEGNNLSLSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIE 680

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             GCFVRFLGRLTGFAPRSKA+D  RADLS++++VGQSVR+NI+DVN E  RITLSLKQS 
Sbjct: 681  NGCFVRFLGRLTGFAPRSKAIDDPRADLSESFFVGQSVRANIVDVNQEKSRITLSLKQSS 740

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            C+S DASF+QE+FL++EKI+ LQSS    SE  WVE F IGS+I+G + E ND GVVV+F
Sbjct: 741  CASVDASFVQEYFLMDEKISDLQSSDITKSEYSWVEKFSIGSLIKGTLQEQNDLGVVVNF 800

Query: 895  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
            +  ++V GFI  H + GAT+  GSV+ A +LD+++AERLVDLSL+   I+   +  SN Q
Sbjct: 801  DNINNVLGFIPQHHMGGATMVPGSVVNAVVLDISRAERLVDLSLRPELINNLTKEVSNSQ 860

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
              KKKRKR  SK+L VHQ V+A+VEIVKE +LVLS+PE+ +++GYAS+SDYNTQK P KQ
Sbjct: 861  L-KKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTVGYASLSDYNTQKLPVKQ 919

Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITE 1073
            F  GQSV+A+V A+ +  T+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AEITE
Sbjct: 920  FSTGQSVVASVEAVQNPLTSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAEITE 979

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            IKP ELR+ FG  F GRIHITEVND  ++  +  F+ F++GQ+++AR+++K    D+KKS
Sbjct: 980  IKPFELRVNFGNSFRGRIHITEVND--ASTSDEPFAKFRVGQSMSARVVSKPCHTDIKKS 1037

Query: 1134 FLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
             LWELS+KP+ML   SE+      E+ +   GQ V GYVYKVD EW  L ISR++ A++F
Sbjct: 1038 QLWELSVKPAMLRDSSELNDIQESEQLEFVAGQCVNGYVYKVDKEWVWLAISRNVTARIF 1097

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD-------GISDKT 1245
            ILD+A E  EL+EF+R F IGKAV+G+VL+ NKEK+ LRLV RP  D       G   KT
Sbjct: 1098 ILDTACEAHELEEFERHFPIGKAVSGYVLTYNKEKRTLRLVQRPLLDIHKSIANGGGSKT 1157

Query: 1246 ----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                + I  D+   FIHEGDI+GGRISKIL GVGGL VQIGP+++GRVHFTE+ ++ V +
Sbjct: 1158 DKLDISIPGDDGTLFIHEGDILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDLWVPN 1217

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDL 1359
            P           L G+ EGQFVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL
Sbjct: 1218 P-----------LDGFREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHISEDL 1266

Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1419
            + + D   K  E+ EDLS +M VQGYVKN  SKGCFI+LSRK++AKV LSNL D +V+ P
Sbjct: 1267 NNN-DNVCKRFERFEDLSLDMGVQGYVKNTMSKGCFIILSRKVEAKVKLSNLCDTFVKEP 1325

Query: 1420 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479
            EKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++    +SE  ++  LHVGD++ G+IKRV
Sbjct: 1326 EKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGQPKSESYDMKKLHVGDMISGRIKRV 1385

Query: 1480 ESYGLFITIENTNLV 1494
            E YGLFI I+   +V
Sbjct: 1386 EPYGLFIDIDQIGMV 1400



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 169/576 (29%), Positives = 265/576 (46%), Gaps = 94/576 (16%)

Query: 39  EAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER 98
           EA  L L   DDV  FPRGGG SL+++ER++I+ EVDAEF+A ER      K K  K+++
Sbjct: 39  EAMALQL---DDVLDFPRGGGTSLSKKEREKIYEEVDAEFDADER---VSKKSKGGKSKK 92

Query: 99  KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
           +    VDDLG LFG     K PRYANKIT KNIS GMKL GVV EVN+KD+VI LPGGLR
Sbjct: 93  RIPSDVDDLGLLFGGLNG-KRPRYANKITTKNISPGMKLLGVVIEVNQKDIVISLPGGLR 151

Query: 159 GLARAADALD---------------------------PILDNEIEANEDNLLPTIFHVGQ 191
           GL RA++A D                           P +   IE + D    ++   GQ
Sbjct: 152 GLVRASEASDFTDLGIEVFSANVKSVEDHGYILHFGLPSISGFIEISNDGNQESVMKTGQ 211

Query: 192 LVSCIVLQLDDDKK--EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
           L+  +V ++D D+K   +      ++  L+    G+S + +  GM++ A V+S+ ++G +
Sbjct: 212 LIQGVVTKIDRDRKVVHLSSDPDSVAKCLTKDLNGMSFDLLIPGMMVNARVQSVLENGIL 271

Query: 250 LHFGLPSFTG----FLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 304
             F L  F G    F  +N L+  S  D      ++   +  ID + + V L+ +P  V 
Sbjct: 272 FDF-LTYFNGTVDLFHLKNPLSNKSWKDEYNQNKMVNARILFIDPSSRAVGLTLNPHLVC 330

Query: 305 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
                  K   + +    +    +V  I ++G++L   +               P   + 
Sbjct: 331 N------KAPPLHVFSGDIFDEAKVVRIDKSGLLLELPS------------KPVPNPAYI 372

Query: 365 NDYNQHKKVNARILFVDPTSRAVGLTLN------PYLLHNRAPPSHVKVGDIYDQSKVVR 418
           + + +   +  RIL +         TL       P   H+   P  V       ++KV+ 
Sbjct: 373 S-FKEGNHIRVRILGLKQMEGLAIGTLKESAFEGPVFTHSDVRPGMVT------KAKVIS 425

Query: 419 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
           VD   G ++          A   +  ++E EV K  KK+K G+ +  R+LG +      T
Sbjct: 426 VDT-FGAIVQFAG---GLKAMCPLRHMSEFEVMKPRKKFKVGAELVFRVLGCKSKRITVT 481

Query: 479 ---GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
               ++K+     ++ +++D   G+V  G +  ++  G  V+F  GV+   P      FE
Sbjct: 482 YKKTLVKSKL--PILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVP-----RFE 534

Query: 536 I-VKPGKK----FKVGAELVFRVLGV--KSKRITVT 564
           + ++PG      F VG  +  RV      S+RIT+ 
Sbjct: 535 LGLEPGSDPDSVFHVGEVVKCRVTSAVHGSRRITLN 570



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 61/373 (16%)

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET----GRIT 827
            I++T C    L       P  KAV G     +K     + V+  +LD++       G  T
Sbjct: 1098 ILDTACEAHELEEFERHFPIGKAVSGYVLTYNKEKRTLRLVQRPLLDIHKSIANGGGSKT 1157

Query: 828  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF--IIGSVIEGKVHES 885
              L  S        F+ E  +L  +I+ +         L  V G    IG  + G+VH  
Sbjct: 1158 DKLDISIPGDDGTLFIHEGDILGGRISKI---------LPGVGGLRVQIGPYVFGRVH-- 1206

Query: 886  NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER---LVDLSLKTVF 942
                    F E +D++     + L G     G  ++  +L+++ + +    ++LSL+T  
Sbjct: 1207 --------FTEINDLW---VPNPLDG--FREGQFVKCKVLEISSSSKGTWQIELSLRTSL 1253

Query: 943  -----IDRFRE--ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 995
                  D   E   N++   ++ +R  + S D+GV   V   +   K  +++LS  +   
Sbjct: 1254 DGMSSADHISEDLNNNDNVCKRFERFEDLSLDMGVQGYVKNTMS--KGCFIILSR-KVEA 1310

Query: 996  SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
             +  +++ D   ++ P+K+F  G+ V   V+ +   S   R+ + LK      T ++   
Sbjct: 1311 KVKLSNLCDTFVKE-PEKEFPVGKLVTGRVLNVEPLSK--RIEVTLK------TVNAGGQ 1361

Query: 1056 KKKSSYD-----VGSLVQAEITEIKPLELRLKFG-IGFHGRIHITEVNDDKSNVVENLFS 1109
             K  SYD     VG ++   I  ++P  L +    IG  G  HIT+++DD+   +EN+ +
Sbjct: 1362 PKSESYDMKKLHVGDMISGRIKRVEPYGLFIDIDQIGMVGLCHITQLSDDR---IENVQA 1418

Query: 1110 NFKIGQTVTARII 1122
             +K G++V+A+I+
Sbjct: 1419 RYKAGESVSAKIL 1431


>gi|222636634|gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japonica Group]
          Length = 1898

 Score = 1487 bits (3850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 782/1398 (55%), Positives = 1030/1398 (73%), Gaps = 38/1398 (2%)

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
            DDLGSLFG   +GKLPR+AN++TLKNIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ 
Sbjct: 111  DDLGSLFGGATTGKLPRFANRVTLKNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSE 170

Query: 165  DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLY 222
            +  D       + +E ++   + HVGQLV CIVL++DDD KE GK  +++WLSLRLS +Y
Sbjct: 171  EVHDITSQETRKDSEGSICADVVHVGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIY 229

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
            KGLSL+ +Q+GMVLTA VKSIEDHGYILHFG+ SF+GF+P+   A+     ++ G L+Q 
Sbjct: 230  KGLSLDAIQDGMVLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQC 286

Query: 283  VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            VV++ID+ R++V+LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFL
Sbjct: 287  VVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFL 346

Query: 343  TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            TYFTGT DIF+L N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN  LL  + P 
Sbjct: 347  TYFTGTADIFNLSNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPS 406

Query: 403  SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
             +VK G+IYD+++V+R+D+  GL L+IPS P  +P +V+I DV++++V+ +EKK+KEGS 
Sbjct: 407  INVKAGEIYDKARVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSM 465

Query: 463  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
             RVR+LG RHLEG+A G LK SAFEG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF  GV
Sbjct: 466  ARVRVLGVRHLEGVAIGTLKESAFEGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGV 525

Query: 523  KALCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA 581
            KALCPLPHMSE E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA
Sbjct: 526  KALCPLPHMSELEHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYA 585

Query: 582  EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
            +A   L+THGWITKIEKHGCFV+FYNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++
Sbjct: 586  DAKIGLLTHGWITKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVV 645

Query: 642  SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
            S +PASR+IN++F++   RV + D  K+GS+VSGVV+ +TP AVVV V   G+ KG+I  
Sbjct: 646  SVVPASRKINVTFLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILN 703

Query: 702  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            EHLADH   A  +K+++KPG+EF +LLVLD E  NL+LSAK SLIN A  +PS+ S +H 
Sbjct: 704  EHLADHRGQAAQLKNLLKPGHEFSELLVLDVEGQNLVLSAKQSLINCASDIPSEISQMHA 763

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             SV HGYVCNIIE GCFVRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+
Sbjct: 764  GSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNA 823

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E+ R+ LSL+QS CSS D SF+Q +FLL++KI  L+ S  + S   W+  F IG+++EG+
Sbjct: 824  ESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGE 883

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V    ++GV+++F+ H DV G I HHQL  ++VE GS ++  ++D++    +V++SLK+ 
Sbjct: 884  VGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSE 941

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
             +      + ++  +KKKR R A  DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A 
Sbjct: 942  LV-----RSVSKVGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAP 996

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSS 1060
            + DYN+Q  P   + NGQ +   V ++PSS   GRLLLL KA  +    SSSKRAKKKS 
Sbjct: 997  LMDYNSQLLPCCNYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSD 1056

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            + VGSLV+AEI +IKPLEL LKFG   HGRIHITEV DD SN  +  FS  +IG++V AR
Sbjct: 1057 FKVGSLVEAEIIDIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQAR 1114

Query: 1121 IIAKSNKPDM-KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
            I+A++       K+  WELSI+PS+L            E   SIG  V  YV KVD EW 
Sbjct: 1115 IVAEAEHSGKGGKNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWI 1174

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RP 1236
             LT+SR + A LFILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL     + 
Sbjct: 1175 WLTVSRDVMAHLFILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQS 1234

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
              + I +    +S     T   +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +
Sbjct: 1235 LPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD 1292

Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
              V +P           +SG+ EGQFVKCKVL++SR+  G+  V+LSLRSS+   +S  S
Sbjct: 1293 SWVQEP-----------ISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQS 1340

Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
              L  D        EKI DL P   V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YV
Sbjct: 1341 RRLFDDSRIRTSRFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYV 1400

Query: 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
            E+P+ +FP+G LV GRVLS EP S +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+
Sbjct: 1401 ENPQNDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQV 1460

Query: 1477 KRVESYGLFITIENTNLV 1494
            KRVES+GLF+TI+ + LV
Sbjct: 1461 KRVESFGLFVTIQGSELV 1478


>gi|242043296|ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
 gi|241922896|gb|EER96040.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
          Length = 1862

 Score = 1466 bits (3795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/1398 (54%), Positives = 1008/1398 (72%), Gaps = 94/1398 (6%)

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
            DDLG+LFG   +GKLPRYAN+IT+KNIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ 
Sbjct: 116  DDLGTLFGGATTGKLPRYANRITVKNISPNMKLWGVVIEVNQKDIVLSLPGGIRGFVRSE 175

Query: 165  DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG 224
            D  D  L    + +E++L   + HVGQLV CIVL++DDDKKE                  
Sbjct: 176  DVCDIALQENRKDSENSLCAKVVHVGQLVPCIVLRVDDDKKE------------------ 217

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 284
                    G VL A VKSIEDHGYILHFG+ SF+GF+ +++  EN  I+ +   L+  VV
Sbjct: 218  --------GKVLAAQVKSIEDHGYILHFGVSSFSGFMQKDD-KENVKIERRQ--LMHCVV 266

Query: 285  RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 344
            ++ID+TR +V+LSSD D + K + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTY
Sbjct: 267  KAIDKTRAIVHLSSDEDLLCKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTY 326

Query: 345  FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 404
            F+GTVDIF+L N+FP+ NWK+DY+++KKVNARILFVDP++RAVGLTLN +LLH   PP +
Sbjct: 327  FSGTVDIFNLLNSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPIN 386

Query: 405  VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
            +K GDIYD+SKV+RVD+  GL L+IPS P  +P +++I DV++++ + LEK +KEGS +R
Sbjct: 387  LKAGDIYDKSKVLRVDKKAGLFLEIPS-PTPSPGFISIHDVSDKDAKNLEK-FKEGSSLR 444

Query: 465  VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
            VRILG R+LEG+A G +K SAFEG VFTH DVKPGM+V+ KV  V+ FGAIVQF  GVKA
Sbjct: 445  VRILGVRNLEGVAIGTVKDSAFEGSVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKA 504

Query: 525  LCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
            LCPLPHMSE E +VKP KKFKVGAEL+FRVLG KSKR+TVT+KK+LVKSKL +L+SYA+A
Sbjct: 505  LCPLPHMSELEHVVKPPKKFKVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLASYADA 564

Query: 584  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               L+THGWITKIEKHGCFV+FYNGVQGF  RS+LGL+ G E  ++YHVGQVVKCRI++ 
Sbjct: 565  KIGLVTHGWITKIEKHGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINV 624

Query: 644  IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            IPASR++N+SF++   RV   D  KLGS+VSGVV+ +TP AVVV V   G+SKGTI  EH
Sbjct: 625  IPASRKLNVSFVISHNRVIPIDTPKLGSIVSGVVERLTPAAVVVSV--NGFSKGTILNEH 682

Query: 704  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
            LADH                       D E  NL+LSAK+SLIN A  +PS+ S +HP  
Sbjct: 683  LADH----------------------HDIEGHNLVLSAKHSLINCANDIPSEISQMHPGV 720

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            VVHGY+CNIIE+GCFVRFLG LTGF+P+ KAVD +   LS  +YVGQSVRS+IL V +ET
Sbjct: 721  VVHGYICNIIESGCFVRFLGHLTGFSPKDKAVDRRIERLSDAFYVGQSVRSHILSVTAET 780

Query: 824  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
             R+ LSL+QS CSSTD+SF+Q +FLL++KIA L+ S ++     W   F IGS++EG+V 
Sbjct: 781  ARVKLSLQQSMCSSTDSSFIQGYFLLDQKIAALKYSSND-----WAHTFGIGSLVEGEVG 835

Query: 884  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
               ++G++++F++H DV G I HHQL G++VE GS ++  +LD++    +V+LSLK   I
Sbjct: 836  AIEEYGIILNFKDHLDVVGLIEHHQLGGSSVEVGSSVKGLVLDLSDG--VVNLSLKPELI 893

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 1003
               R        +KKKR+R A  DL +H+ VNA+VEI+K +YLVLS+PEYN++IG+A + 
Sbjct: 894  GSVRNV-----GKKKKRQRAAVADLELHEEVNAVVEIIKGSYLVLSIPEYNYAIGFAPLM 948

Query: 1004 DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYD 1062
            DYN+Q  P   + NGQ +   V  +PSS ++GRL+LL KA ++ +  S SKRAKKKS Y 
Sbjct: 949  DYNSQLLPHHHYDNGQRITVVVGNIPSSDSSGRLILLPKASAQYSALSESKRAKKKSGYK 1008

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +GSLV+AEI +IKPLEL L+FG   HGRIHITEV +  S+  E+ FS  +IGQ +TARI+
Sbjct: 1009 IGSLVEAEIIDIKPLELLLQFGGNLHGRIHITEVPEKDSD--EHPFSKLRIGQKLTARIV 1066

Query: 1123 AKSNKPDMK--KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
            A++ +P  K  K+F WELSI+P ++   E       +E   +  + V  YV KVD EW  
Sbjct: 1067 AEA-EPSGKSGKNFKWELSIRPCIVN-GEFDELTAQKEQKHTTNEIVRAYVVKVDKEWVW 1124

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            LT+SR++ A LF+LDS+ EPSEL+EFQ+RF  G+AV G V+++N+EK+LLR  L+   + 
Sbjct: 1125 LTVSRNVMAHLFVLDSSSEPSELKEFQQRFSEGQAVKGRVINVNREKRLLR--LKALDNQ 1182

Query: 1241 ISDKTVD-ISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
             +   +D I       F    +GDI+GGR+ KIL GVGGLVVQIGPHL GRVH+TE+ + 
Sbjct: 1183 CTQLNIDEIQQSKSSVFEQTKQGDIIGGRVQKILPGVGGLVVQIGPHLRGRVHYTEIVDS 1242

Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
             V++P           LSG+ EGQFVKCKVL +SR+  G+  V+LSLRSS + +  +N+S
Sbjct: 1243 WVTEP-----------LSGFHEGQFVKCKVLSVSRSSEGSLRVDLSLRSS-NLIRDSNNS 1290

Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1417
             L  D+ T    +EKI+DL P   ++GYVKNV SKGCFIM+SR ++A++ LSNLSD YVE
Sbjct: 1291 GLVDDLATCTSRIEKIKDLLPGTEIKGYVKNVNSKGCFIMISRMVEARITLSNLSDEYVE 1350

Query: 1418 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTL-KTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
            +P+K+FP+G LV GRVLS +P S RVE +L KT+ S+     +I + S+LHVGDI+ GQ+
Sbjct: 1351 NPQKDFPVGMLVHGRVLSTDPSSGRVEASLRKTTGSKLEKLDDI-SYSDLHVGDIIDGQV 1409

Query: 1477 KRVESYGLFITIENTNLV 1494
            KRVES+GLF+TI  + LV
Sbjct: 1410 KRVESFGLFVTIRRSELV 1427



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK---ASAFEGLV-FTH 493
            A +T+S++++E V   +K +  G  V  R+L      G     L+    S  E L   ++
Sbjct: 1337 ARITLSNLSDEYVENPQKDFPVGMLVHGRVLSTDPSSGRVEASLRKTTGSKLEKLDDISY 1396

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            SD+  G ++ G+V  V+SFG  V      +  LC +  +S+  +V     +K G  +  +
Sbjct: 1397 SDLHVGDIIDGQVKRVESFGLFVTIRRSELVGLCHVSELSDEPVVDINSCYKAGDMVKAK 1456

Query: 553  VLGVKSK--RITVTHKKTLVKSKL 574
            +L +  K  R+++  KK+   S L
Sbjct: 1457 ILKIDEKRHRVSLGMKKSYFDSDL 1480


>gi|218199275|gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indica Group]
          Length = 1848

 Score = 1450 bits (3754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 771/1398 (55%), Positives = 1013/1398 (72%), Gaps = 60/1398 (4%)

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
            DDLGSLFG   +GKLPR+AN++TLKNIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ 
Sbjct: 111  DDLGSLFGGATTGKLPRFANRVTLKNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSE 170

Query: 165  DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLY 222
            +  D       + +E ++   + HVGQLV CIVL++DDD KE GK  +++WLSLRLS +Y
Sbjct: 171  EVHDITSQETRKDSEGSICADVVHVGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIY 229

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
            KGLSL+ +Q+GMVLTA VKSIEDHGYILHFG+ SF+GF+P+   A+     ++ G L+Q 
Sbjct: 230  KGLSLDAIQDGMVLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQC 286

Query: 283  VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            VV++ID+ R++V+LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFL
Sbjct: 287  VVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFL 346

Query: 343  TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            TYFTGT DIF+L N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN  LL  + P 
Sbjct: 347  TYFTGTADIFNLSNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPS 406

Query: 403  SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
             +VK G+IYD+++V+R+D+  GL L+IPS P  +P +V+I DV++++V+ +EKK+KEGS 
Sbjct: 407  INVKAGEIYDKARVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSM 465

Query: 463  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
             RVR+LG RHLEG+A G LK SAFEG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF  GV
Sbjct: 466  ARVRVLGVRHLEGVAIGTLKESAFEGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGV 525

Query: 523  KALCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA 581
            KALCPLPHMSE E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA
Sbjct: 526  KALCPLPHMSELEHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYA 585

Query: 582  EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
            +A   L+THGWITKIEKHGCFV+FYNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++
Sbjct: 586  DAKIGLLTHGWITKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVV 645

Query: 642  SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
            S +PASR+IN++F++   RV + D  K+GS+VSGVV+ +TP AVVV V   G+ KG+I  
Sbjct: 646  SVVPASRKINVTFLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILN 703

Query: 702  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            EHLADH                       D E  NL+LSAK SLIN A  +PS+ S +H 
Sbjct: 704  EHLADH----------------------RDVEGQNLVLSAKQSLINCASDIPSEISQMHA 741

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             SV HGYVCNIIE GCFVRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+
Sbjct: 742  GSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNA 801

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E+ R+ LSL+QS CSS D SF+Q +FLL++KI  L+ S  + S   W+  F IG+++EG+
Sbjct: 802  ESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGE 861

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V    ++GV+++F+ H DV G I HHQL  ++VE GS ++  ++D++    +V++SLK+ 
Sbjct: 862  VGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSE 919

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
             +      + ++  +KKKR R A  DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A 
Sbjct: 920  LV-----RSVSKVGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAP 974

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSS 1060
            + DYN+Q  P   + NGQ +   V ++PSS   GRLLLL KA  +    SSSKRAKKKS 
Sbjct: 975  LMDYNSQLLPCCNYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSD 1034

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            + VGSLV+AEI +IKPLEL LKFG   HGRIHITEV DD SN  +  FS  +IG++V AR
Sbjct: 1035 FKVGSLVEAEIIDIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQAR 1092

Query: 1121 IIAKSNKPDM-KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
            I+A++       K+  WELSI+PS+L            E   SIG  V  YV KVD EW 
Sbjct: 1093 IVAEAEHSGKGGKNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWI 1152

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RP 1236
             LT+SR + A LFILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL     + 
Sbjct: 1153 WLTVSRDVMAHLFILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQS 1212

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
              + I +    +S     T   +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +
Sbjct: 1213 LPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD 1270

Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
              V +P           +SG+ EGQFVKCKVL++SR+  G+  V+LSLRSS+   +S  S
Sbjct: 1271 SWVQEP-----------ISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQS 1318

Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
              L  D        EKI DL P   V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YV
Sbjct: 1319 RRLFDDSRIRTSRFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYV 1378

Query: 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
            E+P+ +FP+G LV GRVLS EP S +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+
Sbjct: 1379 ENPQNDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQV 1438

Query: 1477 KRVESYGLFITIENTNLV 1494
            KRVES+GLF+TI+ + LV
Sbjct: 1439 KRVESFGLFVTIQGSELV 1456


>gi|357124172|ref|XP_003563778.1| PREDICTED: protein RRP5 homolog [Brachypodium distachyon]
          Length = 1668

 Score = 1288 bits (3332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 675/1265 (53%), Positives = 902/1265 (71%), Gaps = 72/1265 (5%)

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 294
            VLTA VKS+EDHGYIL+FG+ +F+GF+P+    +   + ++ G L+Q VV++ID+ R ++
Sbjct: 43   VLTAQVKSVEDHGYILYFGVSTFSGFMPK---CDKETVKIESGQLVQCVVKAIDKARAII 99

Query: 295  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            +LS D D +SK + KDLKG+SID L+PGMM++ RV ++LENGVMLSFLTYFTGT DIF+L
Sbjct: 100  HLSCDEDLLSKSIIKDLKGLSIDHLIPGMMMNARVHTVLENGVMLSFLTYFTGTADIFNL 159

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
             N+FP+ NWK+DY+++KKVNARILFVDP++RAVGLTLN +LL    PP +VKVG+IY++S
Sbjct: 160  SNSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNQHLLRFEVPPVNVKVGEIYERS 219

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            +V+R+D+  GL L+IPS P  +P +V+I DV++++V+K+EKK+KEGS  RVR+LG RHLE
Sbjct: 220  RVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKKVEKKFKEGSITRVRVLGVRHLE 278

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
            G+A G LK SAFEG VFTH+DVKPGMV                F GGVKALCPL HMSE 
Sbjct: 279  GVALGTLKDSAFEGSVFTHADVKPGMV----------------FAGGVKALCPLRHMSEL 322

Query: 535  E-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            + +VKP KKFKVGAEL+FRVLG KSKRITVT+KK+LVKSKL +L+SYA+A   L+THGWI
Sbjct: 323  DNVVKPPKKFKVGAELLFRVLGCKSKRITVTYKKSLVKSKLEVLASYADAKIGLVTHGWI 382

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            TKIEKHGCFVRFYNGV+GF  RSELGL+PG E  S+YHVGQVVKCRI+S +PAS ++N+S
Sbjct: 383  TKIEKHGCFVRFYNGVKGFVSRSELGLEPGTEAGSVYHVGQVVKCRIVSVVPASMKLNVS 442

Query: 654  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
            F     R+ + D  K+G++VS VV+ +TP AVVV V   G+SKG+I  EHLADH      
Sbjct: 443  FATSSNRIIQADTAKVGTIVSAVVERLTPAAVVVSV--NGFSKGSILDEHLADH------ 494

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
                             D E  NL+LSAK SLINSA  +PS+ S +   +VVHGY+CNII
Sbjct: 495  ----------------HDTEGQNLILSAKQSLINSANDIPSEISQMQAGAVVHGYICNII 538

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            E GCFVRFLG LTGF+P+ KAVD     LS  ++VGQSVRS+IL+VN+E+ R+ LSL+QS
Sbjct: 539  EAGCFVRFLGHLTGFSPKDKAVDIPMEKLSAAFFVGQSVRSHILNVNAESARLKLSLQQS 598

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             CSS D SFMQ +FLL++KIA ++ S  + S   W +   IGS+++G+V    ++GV+++
Sbjct: 599  VCSSPDCSFMQGYFLLDQKIAEMKYSGSSTSH-DWKKSLGIGSLVKGEVGAVEEYGVILN 657

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            F++H DV G I HHQL G+TV+ GS ++  I+D++    +V+LSLK   I      + + 
Sbjct: 658  FKDHPDVVGLIEHHQLGGSTVKVGSSVKGLIVDLSDG--VVNLSLKPELI-----GSVSM 710

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 1013
              +KKKR R A  DL +H+ VNA+VEIVKE+Y+VLS+PEYNH+IG+A + DYN+Q  P  
Sbjct: 711  DGKKKKRHRAAVLDLELHEEVNAVVEIVKESYVVLSVPEYNHAIGFAPLMDYNSQLLPHH 770

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
             + NGQ +   V ++PSS  +GRL+LL K   +    SS R  KK S  VGSLV+AE+ +
Sbjct: 771  HYDNGQRITVVVGSIPSSDPSGRLILLPKTSGQGSGLSSSRKAKKLSDKVGSLVEAEVID 830

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS-NKPDMKK 1132
            IKPLEL +KFG+  HGRIHITEV +D  +  E+ FS  +IGQ + AR++A++ +  +  +
Sbjct: 831  IKPLELIVKFGVNHHGRIHITEVLEDDCS--EHPFSKLRIGQKIHARVVAQAEHSANSGR 888

Query: 1133 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
               WELSI+PS+L         L  + + S+   V  YV KVD EW  LT+SR++ A LF
Sbjct: 889  KLKWELSIRPSVLQGESKQLNALENKSNHSVNGIVRAYVVKVDREWVWLTVSRNVTAHLF 948

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            ILDS+ EP EL+EFQ+R+ +G+AV G+++ +N+EKKLLR  L+   +    K +D +   
Sbjct: 949  ILDSSVEPIELKEFQQRYRVGQAVKGYIIGVNREKKLLR--LKALDNQAMLKNIDDTQKP 1006

Query: 1253 MQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
            + +      EGDI+GGRI KIL GVGGL++QIGPHL+GRVH+TE+ +  V +P       
Sbjct: 1007 ISSIAEHTKEGDIIGGRIQKILPGVGGLLIQIGPHLHGRVHYTEIVDSWVPEP------- 1059

Query: 1310 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1369
                LSG+ EGQFVKCKVL +SR   G+  VELSLRSS+   S   S  L  D  T    
Sbjct: 1060 ----LSGFHEGQFVKCKVLAVSRPSEGSVRVELSLRSSILCTSHDPSRKLVDDSATCTTR 1115

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
             E + DLSP   V+GYVKNV +KGCFIMLSR ++A+++LSNLSD YVE+P+K+F +G LV
Sbjct: 1116 FENVNDLSPGSEVKGYVKNVNAKGCFIMLSRMIEARIILSNLSDEYVENPQKDFSVGMLV 1175

Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             GRVLS EPLS +VEV+L+      + +S+  + S+LHVGDI+ GQ+KRVESYGLF+TI+
Sbjct: 1176 HGRVLSAEPLSGKVEVSLRKGTGSKSQKSDGISYSDLHVGDIIDGQVKRVESYGLFVTIQ 1235

Query: 1490 NTNLV 1494
            ++ LV
Sbjct: 1236 SSELV 1240



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 39/168 (23%)

Query: 135 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------PILDNEIEANEDNLLPTIF 187
           MKLWGVV EVN+KD+++ LPGG+RG  R  +  D        +L  ++++ ED+     F
Sbjct: 1   MKLWGVVIEVNQKDVIVSLPGGMRGFVRKDEVSDLALHGNHKVLTAQVKSVEDHGYILYF 60

Query: 188 HV-------------------GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL------- 221
            V                   GQLV C+V  +D       +  I LS    LL       
Sbjct: 61  GVSTFSGFMPKCDKETVKIESGQLVQCVVKAIDK-----ARAIIHLSCDEDLLSKSIIKD 115

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 269
            KGLS++ +  GM++ A V ++ ++G +L F L  FTG     NL+ +
Sbjct: 116 LKGLSIDHLIPGMMMNARVHTVLENGVMLSF-LTYFTGTADIFNLSNS 162



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 4/165 (2%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            +D+ PG  VKG V  V++ G  +     ++A   L ++S+  +  P K F VG  +  RV
Sbjct: 1120 NDLSPGSEVKGYVKNVNAKGCFIMLSRMIEARIILSNLSDEYVENPQKDFSVGMLVHGRV 1179

Query: 554  LGVK--SKRITVTHKK-TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG-V 609
            L  +  S ++ V+ +K T  KS+ +   SY++     I  G + ++E +G FV   +  +
Sbjct: 1180 LSAEPLSGKVEVSLRKGTGSKSQKSDGISYSDLHVGDIIDGQVKRVESYGLFVTIQSSEL 1239

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G    SEL  +P  + +S Y  G +VK +I+      RR++L  
Sbjct: 1240 VGLCHVSELSDEPVLDINSCYKAGDMVKAKILKIDEERRRVSLGM 1284



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 123/307 (40%), Gaps = 42/307 (13%)

Query: 118  KLPRYANKITLKNISAGMKLWGVVAE-VNEKDLVICLPGG-----LRGLARAADALDPIL 171
            +L    N+  LKNI    K    +AE   E D++    GG     L G+      + P L
Sbjct: 987  RLKALDNQAMLKNIDDTQKPISSIAEHTKEGDII----GGRIQKILPGVGGLLIQIGPHL 1042

Query: 172  DNEIEANE--DNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG-- 224
               +   E  D+ +P   + FH GQ V C VL +   +   G  ++ LSLR S+L     
Sbjct: 1043 HGRVHYTEIVDSWVPEPLSGFHEGQFVKCKVLAV--SRPSEGSVRVELSLRSSILCTSHD 1100

Query: 225  LSLETVQEGMVLTAYVKSIED-------HGYILHFGLPSFTGFLPR--------NNLA-- 267
             S + V +    T   +++ D        GY+ +         L R        +NL+  
Sbjct: 1101 PSRKLVDDSATCTTRFENVNDLSPGSEVKGYVKNVNAKGCFIMLSRMIEARIILSNLSDE 1160

Query: 268  --ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMV 325
              EN   D   G+L+ G V S +     V +S    T SK    D  GIS   L  G ++
Sbjct: 1161 YVENPQKDFSVGMLVHGRVLSAEPLSGKVEVSLRKGTGSKSQKSD--GISYSDLHVGDII 1218

Query: 326  STRVQSILENGVMLSFLTY-FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
              +V+ +   G+ ++  +    G   +  L +  P  +  + Y     V A+IL +D   
Sbjct: 1219 DGQVKRVESYGLFVTIQSSELVGLCHVSELSDE-PVLDINSCYKAGDMVKAKILKIDEER 1277

Query: 385  RAVGLTL 391
            R V L +
Sbjct: 1278 RRVSLGM 1284


>gi|33235571|dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
 gi|50508626|dbj|BAD31015.1| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
          Length = 1668

 Score = 1264 bits (3271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/1266 (54%), Positives = 900/1266 (71%), Gaps = 73/1266 (5%)

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 294
            VLTA VKSIEDHGYILHFG+ SF+GF+P+   A+     ++ G L+Q VV++ID+ R++V
Sbjct: 43   VLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQCVVKAIDKAREIV 99

Query: 295  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            +LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTYFTGT DIF+L
Sbjct: 100  HLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFTGTADIFNL 159

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
             N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN  LL  + P  +VK G+IYD++
Sbjct: 160  SNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPSINVKAGEIYDKA 219

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            +V+R+D+  GL L+IPS P  +P +V+I DV++++V+ +EKK+KEGS  RVR+LG RHLE
Sbjct: 220  RVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSMARVRVLGVRHLE 278

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
            G+A G LK SAFEG VFTH+DVKPGMV                F  GVKALCPLPHMSE 
Sbjct: 279  GVAIGTLKESAFEGSVFTHADVKPGMV----------------FSSGVKALCPLPHMSEL 322

Query: 535  E-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA+A   L+THGWI
Sbjct: 323  EHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYADAKIGLLTHGWI 382

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            TKIEKHGCFV+FYNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++S +PASR+IN++
Sbjct: 383  TKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVVSVVPASRKINVT 442

Query: 654  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
            F++   RV + D  K+GS+VSGVV+ +TP AVVV V   G+ KG+I  EHLADH      
Sbjct: 443  FLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILNEHLADH------ 494

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
                             D E  NL+LSAK SLIN A  +PS+ S +H  SV HGYVCNII
Sbjct: 495  ----------------RDVEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNII 538

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            E GCFVRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+E+ R+ LSL+QS
Sbjct: 539  EAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNAESARVKLSLQQS 598

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             CSS D SF+Q +FLL++KI  L+ S  + S   W+  F IG+++EG+V    ++GV+++
Sbjct: 599  MCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGEVGAIEEYGVILN 658

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            F+ H DV G I HHQL  ++VE GS ++  ++D++    +V++SLK+  +      + ++
Sbjct: 659  FQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSELV-----RSVSK 711

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 1013
              +KKKR R A  DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A + DYN+Q  P  
Sbjct: 712  VGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAPLMDYNSQLLPCC 771

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEIT 1072
             + NGQ +   V ++PSS   GRLLLL KA  +    SSSKRAKKKS + VGSLV+AEI 
Sbjct: 772  NYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSDFKVGSLVEAEII 831

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM-K 1131
            +IKPLEL LKFG   HGRIHITEV DD SN  +  FS  +IG++V ARI+A++       
Sbjct: 832  DIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQARIVAEAEHSGKGG 889

Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            K+  WELSI+PS+L            E   SIG  V  YV KVD EW  LT+SR + A L
Sbjct: 890  KNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWIWLTVSRDVMAHL 949

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RPFQDGISDKTVDI 1248
            FILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL     +   + I +    +
Sbjct: 950  FILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQSLPENIGETQKPL 1009

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            S     T   +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +  V +P      
Sbjct: 1010 SATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEP------ 1061

Query: 1309 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1368
                 +SG+ EGQFVKCKVL++SR+  G+  V+LSLRSS+   +S  S  L  D      
Sbjct: 1062 -----ISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRTS 1115

Query: 1369 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1428
              EKI DL P   V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G L
Sbjct: 1116 RFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGLL 1175

Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V GRVLS EP S +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+TI
Sbjct: 1176 VHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTI 1235

Query: 1489 ENTNLV 1494
            + + LV
Sbjct: 1236 QGSELV 1241



 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 29/161 (18%)

Query: 135 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------PILDNEIEANEDNLLPTIF 187
           MKLWGVV EVN+KD+V+ LPGG+RG  R+ +  D        +L  ++++ ED+     F
Sbjct: 1   MKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHDITSQETRKVLTAQVKSIEDHGYILHF 60

Query: 188 HV-------------------GQLVSCIVLQLDDDKK--EIGKRKIWLSLRLSLLYKGLS 226
            V                   GQL+ C+V  +D  ++   +   +  LS  +    KGLS
Sbjct: 61  GVSSFSGFMPKADRESAKIESGQLIQCVVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLS 120

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
           ++ +  GM++ A V S+ ++G +L F L  FTG     NL+
Sbjct: 121 IDHLIPGMMVNARVHSVLENGVMLSF-LTYFTGTADIFNLS 160


>gi|414883924|tpg|DAA59938.1| TPA: hypothetical protein ZEAMMB73_957052, partial [Zea mays]
          Length = 1207

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1151 (54%), Positives = 825/1151 (71%), Gaps = 83/1151 (7%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            FPRGG   L++ E  E  AE + +FE        K K+K+   E       DDLG LFG 
Sbjct: 67   FPRGGHSLLSKDEMAEARAEAEQDFE--REAKKGKGKRKRSGGESSGFGVDDDLGILFGG 124

Query: 114  GISGKLPRYANKIT---------------------------------------------- 127
              +GKLPR+AN+IT                                              
Sbjct: 125  ATTGKLPRFANRITVKVGDSEIKITAAEASRARSKIEWSSSGIEGLFWTVSVARIWYKLC 184

Query: 128  ------LKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN 181
                  +KNIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ D  D  L    + + +N
Sbjct: 185  TSMHIKIKNISPNMKLWGVVIEVNQKDIVLSLPGGIRGFVRSEDVCDIALQENRKDSGNN 244

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAY 239
            L   + HVGQLV CIVL++DDD +E GK  +++WLSLRLSLLYKGL+L+ +QEGMVLTA 
Sbjct: 245  LCAEVVHVGQLVPCIVLRVDDDSRE-GKVNKRVWLSLRLSLLYKGLALDGLQEGMVLTAQ 303

Query: 240  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 299
            VKSIEDHGYILHFG+ SF+GF+ +++  +   +  +   L+Q VV++ID+TR +V+LSSD
Sbjct: 304  VKSIEDHGYILHFGVSSFSGFMQKDDKED---VKTERRQLMQCVVKAIDKTRAIVHLSSD 360

Query: 300  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
             D +SK   KDLKG+SID L+PGMMV+ RV S LENG+MLSFLTYF+GTVDIF+L N+FP
Sbjct: 361  EDLLSKSTIKDLKGLSIDHLIPGMMVNARVHSFLENGLMLSFLTYFSGTVDIFNLLNSFP 420

Query: 360  TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRV 419
            + NWK+DY+++KKVNARILFVDP++RAVGLTLN +LLH   PP ++K GDIYD+SKV+RV
Sbjct: 421  SGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPINLKAGDIYDKSKVLRV 480

Query: 420  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 479
            D+  GL L+IPS P  +P +++I DV++++ + LEK +KEGS +RVRILG R+LEG+A G
Sbjct: 481  DKKAGLFLEIPS-PTPSPGFISIRDVSDKDAKNLEK-FKEGSSLRVRILGVRNLEGVAIG 538

Query: 480  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVK 538
             +K SAFEG VFTH DVKPGM+V+ KV  V+ FGAIVQF  GVKALCPLPHMSE E +VK
Sbjct: 539  TIKDSAFEGSVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKALCPLPHMSELEHVVK 598

Query: 539  PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            P KKFKVGAEL+FRVLG KSKR+TVT+KK+LVKSKL +LSSYA+A   L+THGWIT IEK
Sbjct: 599  PPKKFKVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLSSYADAKIGLVTHGWITHIEK 658

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
            HGCFV+FYNGVQGF  RS+LGL+ G E  ++YHVGQVVKCRI++ IPASR++N+SF++  
Sbjct: 659  HGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKLNVSFVISH 718

Query: 659  TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 718
             R++  D  KLGS+VSGVV+ +TP AVVV V   G+SKGTI  EHLADH   A  +K+V+
Sbjct: 719  NRIAPIDTPKLGSIVSGVVERLTPAAVVVSV--NGFSKGTILNEHLADHHGQAAQLKNVL 776

Query: 719  KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            KPG+EF+QLLVLD E  NL+LSAK+SLIN A  +PS+ S +HP  VVHGY+CNIIE GCF
Sbjct: 777  KPGHEFNQLLVLDTEGQNLVLSAKHSLINCANDIPSEISQMHPGVVVHGYICNIIEAGCF 836

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            VRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL VN+ET R+ L+L+QS CSS 
Sbjct: 837  VRFLGHLTGFSPKDKAVDRWIEKLSDAFYVGQSVRSHILSVNAETARVKLALQQSMCSSM 896

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            D+SF+Q +FLL++KIA L+ S ++     W   F IGS++E +V    ++G++++F++H 
Sbjct: 897  DSSFIQGYFLLDQKIAALKYSSND-----WARHFGIGSLVEAEVGAIEEYGIILNFKDHL 951

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            D  G I HHQL G++VE GS ++  +LD++    +V+LS+K   ID  R        +KK
Sbjct: 952  DTVGLIEHHQLGGSSVEVGSSVKGLVLDLSDG--VVNLSVKPELIDSVRIV-----GKKK 1004

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 1018
            KR+R    DL +H+ VNA+VEI+K++Y+VLS+PEYN++IG++ + DYN+Q  P   + NG
Sbjct: 1005 KRQRAVVADLELHEEVNAVVEIIKDSYMVLSIPEYNYAIGFSPLMDYNSQLLPHHHYDNG 1064

Query: 1019 QSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPL 1077
            Q +   V  +PSS ++GRL+LL KA ++ +  S SKRAKKKS Y +GSLV+AEI +IKPL
Sbjct: 1065 QRITVVVGNIPSSDSSGRLILLPKASAQYSSLSDSKRAKKKSGYKIGSLVEAEIIDIKPL 1124

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK--KSFL 1135
            EL LKFG   HGRIHITE+ ++ S   E+ FS  +IGQ +TARI++++ +P  K  K F 
Sbjct: 1125 ELLLKFGGNLHGRIHITEILEEDS--AEHPFSELRIGQKLTARIVSEA-EPSGKSGKKFK 1181

Query: 1136 WELSIKPSMLT 1146
            WELSI+P ++ 
Sbjct: 1182 WELSIRPCIVN 1192



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 164/684 (23%), Positives = 278/684 (40%), Gaps = 114/684 (16%)

Query: 665  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
            D VK G LV   V  V P   +V   + G  K   P  H+++ LEH      V+KP  +F
Sbjct: 553  DDVKPGMLVRAKVATVEPFGAIVQ-FSSGV-KALCPLPHMSE-LEH------VVKPPKKF 603

Query: 725  D---QLL--VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
                +LL  VL  +S  + ++ K SL+ S   + S  +      V HG++ +I + GCFV
Sbjct: 604  KVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLSSYADAKIGLVTHGWITHIEKHGCFV 663

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            +F   + GF  RS        +    Y+VGQ V+  I++V   + ++            +
Sbjct: 664  KFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKL------------N 711

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             SF+  H     +IA + + K             +GS++ G V       VVVS    S 
Sbjct: 712  VSFVISH----NRIAPIDTPK-------------LGSIVSGVVERLTPAAVVVSVNGFSK 754

Query: 900  VYGFITHHQLA---GATVESGSVI-------QAAILDVAKAERLVDLSLKTVFIDRFREA 949
              G I +  LA   G   +  +V+       Q  +LD  + + LV LS K   I+   + 
Sbjct: 755  --GTILNEHLADHHGQAAQLKNVLKPGHEFNQLLVLD-TEGQNLV-LSAKHSLINCANDI 810

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
             S           +    + VH     I  I++    V  L    H  G+ S  D    +
Sbjct: 811  PSEIS--------QMHPGVVVH---GYICNIIEAGCFVRFL---GHLTGF-SPKDKAVDR 855

Query: 1010 FPQK---QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS---------SSKRAKK 1057
            + +K    F  GQSV + ++++ + +   +L L     S  ++S             A K
Sbjct: 856  WIEKLSDAFYVGQSVRSHILSVNAETARVKLALQQSMCSSMDSSFIQGYFLLDQKIAALK 915

Query: 1058 KSSYD------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 1111
             SS D      +GSLV+AE+  I+      ++GI  + + H+  V   + + +    S+ 
Sbjct: 916  YSSNDWARHFGIGSLVEAEVGAIE------EYGIILNFKDHLDTVGLIEHHQLGG--SSV 967

Query: 1112 KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML-TVSEIGSKLLFEEC---DVSIGQRV 1167
            ++G +V   ++  S+        +  LS+KP ++ +V  +G K   +     D+ + + V
Sbjct: 968  EVGSSVKGLVLDLSDG-------VVNLSVKPELIDSVRIVGKKKKRQRAVVADLELHEEV 1020

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
               V  + + + +L+I  +  A  F     Y    L      +  G+ +T  V +I    
Sbjct: 1021 NAVVEIIKDSYMVLSIPEYNYAIGFSPLMDYNSQLLP--HHHYDNGQRITVVVGNIPSSD 1078

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
               RL+L P          D      ++    G +V   I  I      L+++ G +L+G
Sbjct: 1079 SSGRLILLPKASAQYSSLSDSKRAKKKSGYKIGSLVEAEIIDIKPL--ELLLKFGGNLHG 1136

Query: 1288 RVHFTE-LKNICVSDPLSGYDEGQ 1310
            R+H TE L+      P S    GQ
Sbjct: 1137 RIHITEILEEDSAEHPFSELRIGQ 1160



 Score = 47.0 bits (110), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            +I  + P ++V GY+ N+   GCF+     L          D ++E     F +G+ V  
Sbjct: 813  EISQMHPGVVVHGYICNIIEAGCFVRFLGHLTGFSPKDKAVDRWIEKLSDAFYVGQSVRS 872

Query: 1432 RVLSVEPLSKRVEVTLKTS----------------DSRTASQSEINNLSNLH--VGDIVI 1473
             +LSV   + RV++ L+ S                D + A+    +N    H  +G +V 
Sbjct: 873  HILSVNAETARVKLALQQSMCSSMDSSFIQGYFLLDQKIAALKYSSNDWARHFGIGSLVE 932

Query: 1474 GQIKRVESYGLFITIEN 1490
             ++  +E YG+ +  ++
Sbjct: 933  AEVGAIEEYGIILNFKD 949



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            L    D    ++  G++ ++   GCF+     +   V  S+L        E  + +G++V
Sbjct: 637  LSSYADAKIGLVTHGWITHIEKHGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVV 696

Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              R+++V P S+++ V+   S +R A       +    +G IV G ++R+    + +++
Sbjct: 697  KCRIINVIPASRKLNVSFVISHNRIAP------IDTPKLGSIVSGVVERLTPAAVVVSV 749


>gi|255581558|ref|XP_002531584.1| programmed cell death protein, putative [Ricinus communis]
 gi|223528780|gb|EEF30787.1| programmed cell death protein, putative [Ricinus communis]
          Length = 1330

 Score = 1110 bits (2870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/921 (63%), Positives = 711/921 (77%), Gaps = 85/921 (9%)

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            RSELG++PG + SSMYHVGQVVKCR++SS+PASRRINLSF MKPTRV +++ +KLGS+V+
Sbjct: 12   RSELGIEPGNDASSMYHVGQVVKCRVLSSLPASRRINLSFTMKPTRVPKEEALKLGSVVA 71

Query: 675  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 734
            GVV+ VT NAV+VYV +KGY++G I TEHLAD  E A + KSV+KPGYEFDQLLVLD E+
Sbjct: 72   GVVEKVTSNAVIVYVNSKGYTRGIISTEHLADRHEQAALFKSVLKPGYEFDQLLVLDIEN 131

Query: 735  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
            +NL+LSAKYSL+NSA QLPSD + IHP S+VHGY+CN+I+TGCFVRFLGRLTGF+P+SKA
Sbjct: 132  NNLVLSAKYSLVNSAHQLPSDLTEIHPQSIVHGYICNLIDTGCFVRFLGRLTGFSPKSKA 191

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
            +D Q+A LS+ +Y+GQSVRSNI+DV+SET RIT+SLKQS CSSTDASF+QE+FL+EEK+A
Sbjct: 192  MDNQKAQLSEAFYIGQSVRSNIIDVSSETNRITVSLKQSSCSSTDASFLQEYFLVEEKVA 251

Query: 855  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 914
             LQSS   G +LKWVEGF IG+V+E KV ES + G+VVSF++++DV GFITH+QL G TV
Sbjct: 252  ELQSSDSKGPDLKWVEGFNIGTVVEAKVEESKEVGIVVSFDKYNDVLGFITHYQLGGTTV 311

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            E+GS I+AA+LDVAK E LVDLSLK  F+D+  +  SN Q  KKKRKRE  K+L V+Q+V
Sbjct: 312  ETGSTIRAAVLDVAKTEHLVDLSLKPEFLDKCTDEKSNSQTHKKKRKREVLKNLEVYQSV 371

Query: 975  NAIVEIVKENYL----------------------------VLSLPEYNHSIGYASVSDYN 1006
             A+VEIVKENY+                            VLS+PE+N+ IGYASVSDYN
Sbjct: 372  TAVVEIVKENYMASALFFPLDDRCCTNSNVSSCSSVPLKQVLSIPEHNYIIGYASVSDYN 431

Query: 1007 TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGS 1065
             QK PQKQFLNGQSV+ATVMALPSSSTAGRLLLLLK+ISE TETSS+K+AKKKSSY +GS
Sbjct: 432  IQKLPQKQFLNGQSVVATVMALPSSSTAGRLLLLLKSISEITETSSTKKAKKKSSYKIGS 491

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            LVQA                         EVNDD    +E+ F++FKIGQTVTARI+AK+
Sbjct: 492  LVQA-------------------------EVNDD--CFLEDPFTSFKIGQTVTARIVAKT 524

Query: 1126 NKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
            +K D  K+ LWELSIKP +LT   E   KL+ +E + S G R+TGYVYKVD+EWA LTIS
Sbjct: 525  SKAD--KNQLWELSIKPKVLTDFWESEDKLMSKEFEFSSGHRITGYVYKVDSEWAWLTIS 582

Query: 1185 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD----- 1239
            RHLKAQLFILDSA EPSELQEFQ+RF +GKAV+G+VLS NKEK LLRLV RP        
Sbjct: 583  RHLKAQLFILDSACEPSELQEFQKRFFVGKAVSGYVLSYNKEKTLLRLVQRPLCAVSCIH 642

Query: 1240 ------GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                    +D   ++  DN   +I EGDIVGG+ISKILSGVGG++VQIGPH++G+VH+TE
Sbjct: 643  VNGEALNKNDAQNEVRRDNAAAYIQEGDIVGGKISKILSGVGGVLVQIGPHVHGKVHYTE 702

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353
            L+   V +P           L GY EGQFVKCKVLEISR+ +GT H++LSLR SLDGM S
Sbjct: 703  LQESWVPNP-----------LDGYREGQFVKCKVLEISRSDKGTTHIDLSLRFSLDGMLS 751

Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
             NSS+LS + D   + +EKI+DL PN +VQGYVKNV  KGCFI LSRK+DAK+LLSNLSD
Sbjct: 752  QNSSELSKNAD---QRVEKIDDLQPNTVVQGYVKNVAPKGCFIFLSRKIDAKILLSNLSD 808

Query: 1414 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
             +V SPE+EFPIGKLV GRVLSVEPLSKRVEVTLK  ++++  +SE+N+LS L+VGD   
Sbjct: 809  EFVVSPEEEFPIGKLVTGRVLSVEPLSKRVEVTLK-KNAKSTGKSELNDLSRLNVGDTAS 867

Query: 1474 GQIKRVESYGLFITIENTNLV 1494
            G+IKRVE YGLFI I++TNLV
Sbjct: 868  GRIKRVEPYGLFIAIDHTNLV 888



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMSEFE--------IVKPGKKFKV 545
           +K G VV G V  V S   IV     G  + +    H+++          ++KPG +F  
Sbjct: 64  LKLGSVVAGVVEKVTSNAVIVYVNSKGYTRGIISTEHLADRHEQAALFKSVLKPGYEFDQ 123

Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
                  VL +++  + ++ K +LV S   + S   E   + I HG+I  +   GCFVRF
Sbjct: 124 -----LLVLDIENNNLVLSAKYSLVNSAHQLPSDLTEIHPQSIVHGYICNLIDTGCFVRF 178

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              + GF+P+S+   +   + S  +++GQ V+  I+     + RI +S 
Sbjct: 179 LGRLTGFSPKSKAMDNQKAQLSEAFYIGQSVRSNIIDVSSETNRITVSL 227



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 20/216 (9%)

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFTHS---------------DVKPG 499
           Y+EG  V+ ++L     +   T I  +  F  +G++  +S               D++P 
Sbjct: 715 YREGQFVKCKVLEISRSDKGTTHIDLSLRFSLDGMLSQNSSELSKNADQRVEKIDDLQPN 774

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-- 557
            VV+G V  V   G  +     + A   L ++S+  +V P ++F +G  +  RVL V+  
Sbjct: 775 TVVQGYVKNVAPKGCFIFLSRKIDAKILLSNLSDEFVVSPEEEFPIGKLVTGRVLSVEPL 834

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF-YNGVQGFAPRS 616
           SKR+ VT KK    +  + L+  +         G I ++E +G F+   +  + G    S
Sbjct: 835 SKRVEVTLKKNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGLFIAIDHTNLVGLCHVS 894

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           EL  D      + Y  G+ V  RI+      RRI+L
Sbjct: 895 ELSDDHVDSVETKYRAGEKVTARILKVDVERRRISL 930



 Score = 43.5 bits (101), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 152/340 (44%), Gaps = 41/340 (12%)

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC---CSSTDASFMQEHFLLEEKIAMLQ 857
            +  K ++VG++V   +L  N E   + L  +  C   C   +   + ++    E      
Sbjct: 603  EFQKRFFVGKAVSGYVLSYNKEKTLLRLVQRPLCAVSCIHVNGEALNKNDAQNE------ 656

Query: 858  SSKHNGSELKWVEGFIIGSVIEGKVHE--SNDFGVVVSFEEHSDVYGFITHHQLAGATV- 914
              + + +     EG I+G    GK+ +  S   GV+V    H  V+G + + +L  + V 
Sbjct: 657  -VRRDNAAAYIQEGDIVG----GKISKILSGVGGVLVQIGPH--VHGKVHYTELQESWVP 709

Query: 915  ------ESGSVIQAAILDVAKAER---LVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
                    G  ++  +L+++++++    +DLSL+   +D     NS+  ++   ++ E  
Sbjct: 710  NPLDGYREGQFVKCKVLEISRSDKGTTHIDLSLR-FSLDGMLSQNSSELSKNADQRVEKI 768

Query: 966  KDLGVHQTVNAIVEIV--KENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIA 1023
             DL  +  V   V+ V  K  ++ LS  + +  I  +++SD      P+++F  G+ V  
Sbjct: 769  DDLQPNTVVQGYVKNVAPKGCFIFLS-RKIDAKILLSNLSDEFVVS-PEEEFPIGKLVTG 826

Query: 1024 TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF 1083
             V+++   S   R+ + LK     +++        S  +VG      I  ++P  L +  
Sbjct: 827  RVLSVEPLSK--RVEVTLK--KNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGLFIAI 882

Query: 1084 G-IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
                  G  H++E++DD  + VE   + ++ G+ VTARI+
Sbjct: 883  DHTNLVGLCHVSELSDDHVDSVE---TKYRAGEKVTARIL 919


>gi|168031842|ref|XP_001768429.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680354|gb|EDQ66791.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1785

 Score = 1017 bits (2629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1412 (41%), Positives = 862/1412 (61%), Gaps = 117/1412 (8%)

Query: 135  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 194
            MK+WG VAE+N KD+VI LPGGLRG   A +A      +E+  NE  LL  +F VGQLV+
Sbjct: 1    MKIWGAVAEINNKDMVISLPGGLRGFVLAEEA------SEVFENEVPLLSDLFSVGQLVA 54

Query: 195  CIV--LQLDDDKKEIGK-----------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
            C V  L+L  +KK  GK           R+I LSL+L  LY GLS+E V EG  LTA V 
Sbjct: 55   CTVRKLELTQEKKGRGKPEKEGKNEKRGRRIELSLKLGYLYDGLSIEAVYEGQALTAVVT 114

Query: 242  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            SIEDHGY+L FG+P+ +GFL   N  + +   ++ G L+QGVV S+D+ R  V L +D  
Sbjct: 115  SIEDHGYLLSFGVPAVSGFLLHRNYLDGTS-KLRTGQLVQGVVISVDKKRGAVGLKADLG 173

Query: 302  TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
             +S  + K+  G++++LL PG MV+ RV+S+L+NG++LSFLTYFTGTVDIFHL++  P  
Sbjct: 174  LISSNMVKEFAGLTVELLTPGAMVNARVRSVLKNGLLLSFLTYFTGTVDIFHLEDPLPGA 233

Query: 362  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR 421
            +W   Y++++++ ARIL++DP ++ +GLTLNP LL+N  P   V VGD++  + V RVD 
Sbjct: 234  DWNTKYSENQRLKARILYIDPVAKTIGLTLNPQLLNNVLPSMSVDVGDVFKDAIVRRVDA 293

Query: 422  GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481
             +G+LL++P+       Y  IS V++E + KLEKKY  G  VR R++G R ++ LA   L
Sbjct: 294  TIGMLLELPTKENVVAGY--ISSVSDEHIAKLEKKYTVGKKVRARVIGHRVMDALAIASL 351

Query: 482  KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
            K S  + L+ +H+DV+P M V G VIAV+ +GA+VQ   GVKALCPL HMSEF+   P  
Sbjct: 352  KESVVDQLLLSHADVQPAMNVTGTVIAVEPYGALVQLAEGVKALCPLQHMSEFQRSNPSS 411

Query: 542  KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
            KF+VG++L FRVL     +K+IT+THKKTL+ SKL+ + SY  A + L+THG+IT IE  
Sbjct: 412  KFQVGSKLKFRVLSCDHHAKKITLTHKKTLITSKLSPIVSYESAVEGLVTHGFITGIEDI 471

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            GCFV FYN V+G   +S LG++ G +  +++ VGQ +KCR++ S PA+RR++LSF+   +
Sbjct: 472  GCFVSFYNDVKGLVHKSALGIEAGVKAENVFQVGQSIKCRVLRSDPAARRLSLSFITTSS 531

Query: 660  R------VSEDDLVKLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLADHLEHAT 712
            R       + D+L+  G +V+G V  V  + ++V V    G  KG +   HL+D L H  
Sbjct: 532  RDDASEGAAGDELI--GKVVAGTVHHVNDSVIIVNVSTPTGLVKGYLTFPHLSDTLGHIE 589

Query: 713  VMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
             +KSV K G++FD+LLVLD  +   L++SAK SL+ +A  LPSD S + P SV+ GYV N
Sbjct: 590  QLKSVTKVGFQFDRLLVLDVTDKQKLIVSAKQSLLQAASSLPSDISQLQPQSVIPGYVAN 649

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            I + GCFVRFLGRLTG A   +  D   +D S  + VGQSVR+ +L+V  +TG+ +L LK
Sbjct: 650  ITDRGCFVRFLGRLTGLASVPQVADEFVSDPSNHFSVGQSVRAQVLEVYHDTGKFSLCLK 709

Query: 832  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
            QS C STD S +Q +FL E+KI          S+L+W +   IG+   G+V E  D+GV+
Sbjct: 710  QSVCFSTDVSLIQGYFLEEDKIV----EASEASDLEWAKTLAIGACTGGEVQEIKDYGVI 765

Query: 892  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            V    + DV GF+TH+QL G  VE G  +QA +LDV KA+R+VDL+++   + +  + +S
Sbjct: 766  VKLPNYKDVVGFVTHYQL-GTPVEVGDSVQARVLDVVKADRIVDLTVRPELL-QVNKHDS 823

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
             ++ +K K++      L +HQ V+A++E+VK+ YLVLSLPE  ++IG+A+  DYN+++  
Sbjct: 824  TKKKEKNKKRSHPVMALELHQKVSAVIELVKDAYLVLSLPEQGNAIGFAAAGDYNSRRQD 883

Query: 1012 QKQ-FLNGQSVIATVMALPSSSTAGRLLLLLKAIS---ETETSSSKRAKKKSSYDVGSLV 1067
              Q +  GQ V+ATV  L   +   R+LLLL       E +TS++K+ +++    +G++V
Sbjct: 884  SHQRYSPGQRVVATVEHLGDETNGNRMLLLLSNTGDSVEVKTSNTKKPRRELDKLIGAIV 943

Query: 1068 QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ-----TVTARII 1122
             AEI +            GF  +               N  S+F IGQ      V    +
Sbjct: 944  DAEIID------------GFEEK---------------NPLSSFNIGQKVRCRVVQRVRL 976

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
             KS     + S L ELS++PS L+  +  GS    EE  +  GQ +T YV +V ++WA L
Sbjct: 977  QKSPGRKERTSVL-ELSLRPSQLSGYTRPGSLPSLEE--LVPGQCITAYVQEVKDDWAWL 1033

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR------ 1235
            +++ HL+ +LFILDS+ +PSEL++F  RF +G  V+  V S++ EK+ L  + R      
Sbjct: 1034 SVAPHLRGRLFILDSSTDPSELEKFAERFTVGTPVSCCVKSVDYEKRTLDFIRRQPPQLQ 1093

Query: 1236 --------PFQDGISDKTVDISNDNMQTF-IHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
                    P +D  S       N+  Q F I +GD +GGR+ ++  GVGG+ VQI P  +
Sbjct: 1094 EKSLFDVPPMEDADSSS----ENNTKQVFWIQKGDSLGGRVKQVNPGVGGISVQIAPSSF 1149

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
            GRVH T L            DE + +P S + EGQFV+C VL + +   G   ++L+LR 
Sbjct: 1150 GRVHVTHLS-----------DEWKDNPASAFKEGQFVRCVVLGVEKNPNGKTVIDLTLRK 1198

Query: 1347 SLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            SL GM + N  +SD +T           I+ L   +++QG+VK+ + KGCFI L+ ++DA
Sbjct: 1199 SLGGMVAANLQASDSAT-TRCVKFQCRTIKPLC--LVLQGFVKSTSKKGCFISLAPQVDA 1255

Query: 1405 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI--NN 1462
             VL  NLS  +V+ P + FP GKL+ GR+++++    RVE++LKTS  +    S +    
Sbjct: 1256 IVLTCNLSKAFVKDPAESFPPGKLIKGRIINIDADLGRVEMSLKTSGQKKELTSTLLGRR 1315

Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
              +   G++V G IKR+E +G+F+TIE +++V
Sbjct: 1316 FGDFKEGEVVFGTIKRIEKFGIFVTIEQSSVV 1347


>gi|449519617|ref|XP_004166831.1| PREDICTED: protein RRP5 homolog, partial [Cucumis sativus]
          Length = 1323

 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/894 (56%), Positives = 645/894 (72%), Gaps = 57/894 (6%)

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            R ELG++PG +PSS YH+GQV+KCRI SS  +S+RI+LSF+MKP RVSED  V+LG +V+
Sbjct: 31   RFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISLSFVMKPARVSEDTKVELGCIVT 90

Query: 675  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 734
            GVVD +T   V +Y+    YS+G I TEHL+DH  HA+ +KSV+KPGY+FDQLLVL  E 
Sbjct: 91   GVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKPGYQFDQLLVLAIEG 150

Query: 735  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
             +L+LSAK SLI  A  LPSD+SH++P S++HG++CNIIE GCFVRFLGRLTGF+PR+KA
Sbjct: 151  ESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVRFLGRLTGFSPRNKA 210

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
            +  Q+ DL +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDASF+QE F  EEKIA
Sbjct: 211  MQDQKLDLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDASFIQEFFSTEEKIA 270

Query: 855  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 914
             LQS      E  W E F IGSV+EG+V E  D GV +SFE++ DV+GFI  H L+G+ V
Sbjct: 271  KLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDVFGFIALHGLSGSIV 326

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            E+GS IQAA+LDV+K ERLVDLSLK   +D+++  +S+RQ  +KKRK EA KDL ++QTV
Sbjct: 327  ETGSTIQAAVLDVSKTERLVDLSLKPELVDKWKGGSSSRQTNRKKRKAEAPKDLEMNQTV 386

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 1034
            + +VE VKENYLVLSLPE+ H+IGYAS  DYNTQ+  QK F  GQSV+ATV+ALP  ST 
Sbjct: 387  HTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQSVVATVVALPCPSTF 446

Query: 1035 GRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
            GRLLLLLK+ISE   T  SKR++K SS +VGSLV AE++                     
Sbjct: 447  GRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEVSNTP------------------ 488

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLT-VSEIG 1151
                D+ S   E  FSNF++GQTV ARI+A++N    K K +LWELS+KP +L   S +G
Sbjct: 489  ----DEAS---EAPFSNFRVGQTVVARIVAEANHSASKVKGYLWELSVKPEVLKDFSAVG 541

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
             +++ E+   SIGQRVT YV  V+ +WA L ++R + AQLFILDS+ EPSELQEF + F+
Sbjct: 542  GEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFILDSSSEPSELQEFSKHFY 601

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF-----------IHEG 1260
            +GKAV+G++ +I  EKK+LRLVL      IS    D  N  +              ++EG
Sbjct: 602  VGKAVSGYISNIIGEKKILRLVLHHLS-AISSGKSDQENSKISNLPTDVCKKVICHLNEG 660

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
            DIVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL +  V DPL           SGY EG
Sbjct: 661  DIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPL-----------SGYKEG 709

Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1380
            QFVKCKV+EI+  V+GT H++LSLRSS   +   N    + +    G+   KIED+  +M
Sbjct: 710  QFVKCKVIEITHAVKGTTHIDLSLRSSAGILCQKNIECSNHENIASGR--VKIEDIHAHM 767

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
             VQGYVKN++ KGCFIMLSR L+AK+LLSNLSDGY+++PEKEFP GKLV GR+LSVEPLS
Sbjct: 768  EVQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRILSVEPLS 827

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            KRVEVTLK+     A +   N+L +   GDI+ G+IKRVES+GLFI+I+NT++V
Sbjct: 828  KRVEVTLKSVTETGALRGSNNDLRSFSAGDIISGRIKRVESFGLFISIDNTDVV 881



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
           ++KPG +F         VL ++ + + ++ K++L+K    + S  +      I HG+I  
Sbjct: 133 VLKPGYQFDQ-----LLVLAIEGESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICN 187

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           I + GCFVRF   + GF+PR++   D   +    Y++GQ V+  ++     + RI LS 
Sbjct: 188 IIEAGCFVRFLGRLTGFSPRNKAMQDQKLDLRETYYIGQSVRSNVVDVSGETGRITLSL 246



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 34/234 (14%)

Query: 457 YKEGSCVRVRILGFRHLEGLATGI---LKASAFEGLVF-------THSDVKPG------- 499
           YKEG  V+ +++   H     T I   L++SA  G++         H ++  G       
Sbjct: 706 YKEGQFVKCKVIEITHAVKGTTHIDLSLRSSA--GILCQKNIECSNHENIASGRVKIEDI 763

Query: 500 ---MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
              M V+G V  +   G  +    G++A   L ++S+  I  P K+F  G  +  R+L V
Sbjct: 764 HAHMEVQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRILSV 823

Query: 557 K--SKRITVTHKKTLVKSKLA----ILSSYAEATDRLITHGWITKIEKHGCFVRFYN-GV 609
           +  SKR+ VT K       L      L S++ A D  I  G I ++E  G F+   N  V
Sbjct: 824 EPLSKRVEVTLKSVTETGALRGSNNDLRSFS-AGD--IISGRIKRVESFGLFISIDNTDV 880

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
            G    SE+  DP       YH G  VK +++       RI L   MK + + E
Sbjct: 881 VGLCHVSEVSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALG--MKRSYIGE 932


>gi|302780137|ref|XP_002971843.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
 gi|300160142|gb|EFJ26760.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
          Length = 1807

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1461 (39%), Positives = 866/1461 (59%), Gaps = 118/1461 (8%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            FPRGG  +L+  E  E  AE +AEF      L KK KKKK+K E    E      +L   
Sbjct: 20   FPRGGKQALSAAEIQEARAEAEAEFNRENENLGKKTKKKKRKVEEDPEEE-----TLL-- 72

Query: 114  GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADAL---DPI 170
             +SG   +    +  + + +GM+LWG V+ +N+ DL I LP GL G  +  +A     P 
Sbjct: 73   -LSGNARKSVELLKFRKLCSGMRLWGAVSGINKTDLSISLPNGLHGFVKVDEAFPEYTPD 131

Query: 171  LDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK---RKIWLSLRLSLLYKGLSL 227
            L ++ +     LL  +FHVGQ VSC +L L++ K +  K   R+  LSL      +G+++
Sbjct: 132  LSDD-KGKCHLLLEELFHVGQYVSCTLLNLEETKGDGQKKQPRRAVLSLLPRHFNEGMTM 190

Query: 228  ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI 287
            +T+  G ++ + VKSIEDHGY+L FGLP  +GFL   +   + G  ++ G ++Q  V +I
Sbjct: 191  DTIYVGQLMISSVKSIEDHGYVLSFGLPEMSGFLLHKD---HQGEKLRVGEIMQSCVSAI 247

Query: 288  DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
            D+ R V+ L++          K+ + +S+  LVPG +V+  VQ+++ NGV+LSFLTYFTG
Sbjct: 248  DKKRGVINLTT---MQLSSAMKEHENLSLGTLVPGALVNGCVQAVMRNGVLLSFLTYFTG 304

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV 407
             VDIFHLQ+   + +W  DY + K+  ARI+F+D  ++ + L+L  +L+        +  
Sbjct: 305  IVDIFHLQSVLSSKDWAQDYTEGKRFKARIIFIDARTKRIRLSLRSHLVDAEIVVPSLNR 364

Query: 408  GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
            GD+ + +++ RVD  +GLLL++P+TP     YV  +DV++  V KLEKK+K+G  V+ RI
Sbjct: 365  GDVIEAARIKRVDPAIGLLLELPATP-HVAGYVNHADVSDVNVDKLEKKFKDGQRVKARI 423

Query: 468  LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
            +GFR ++G+AT  LK S  +G+V    D+KPG +V G +  V++ GA+V   GGVK LCP
Sbjct: 424  IGFRLMDGMATLTLKESMVKGVV-NKLDLKPGALVHGVITRVEACGALVSL-GGVKGLCP 481

Query: 528  LPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
            + HMSE+  +KP  KF+VG ++ FRVL    + K++++T KK+LV SKL ++++Y +A D
Sbjct: 482  VQHMSEYNRLKPSSKFEVGKKMKFRVLQYDHEKKKLSLTFKKSLVSSKLPLITAYEDAVD 541

Query: 586  RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             L+THGWI  I   GCF+ FYN V+G   RSELG+ P     + +HVGQVVKCR++ S  
Sbjct: 542  GLVTHGWIQGISNIGCFMEFYNHVKGLVHRSELGIGPDTPIEAAFHVGQVVKCRVLESDL 601

Query: 646  ASRRINLSFMM--KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            + RR++LSF M  +P        VK GS+VS V+  +  + + + V     S  T+  EH
Sbjct: 602  SKRRLSLSFNMSLRPG-------VKPGSVVSAVITQMGSSQIELQVNDDIAS--TMSYEH 652

Query: 704  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
            L+D   HA  M+S++KPG++FD+LLVL  E S L+L+AKYSLI++A+ LPS    + P +
Sbjct: 653  LSDTPVHAEQMRSLLKPGFKFDRLLVLGWEHSKLVLTAKYSLIDAAESLPSSIHQLSPMA 712

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            V+ GY+  I +  C V FL  +TG  P   A DG   DLS+ ++VGQSVR+ +L+V+SE 
Sbjct: 713  VLPGYISVIHDKYCLVSFLDDVTGLVPIGNASDGYLEDLSQVFFVGQSVRAQVLEVDSEN 772

Query: 824  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
             +  LSLKQS C STD S +Q +FL EE IA L+  +     L W     IG ++E  V 
Sbjct: 773  EKFVLSLKQSACFSTDVSLIQGYFLEEELIAKLKEKEG----LDWGNKLQIGELVEADVQ 828

Query: 884  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
            E  D+G++++ ++++DV GF TH+Q + + VE G+ ++A ILDV K + +VDLSL+    
Sbjct: 829  EVKDYGIILNLKDNADVVGFATHYQ-SDSPVEVGAAVKACILDVVKTDGIVDLSLQK--- 884

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 1003
                         K  + ++    L +HQ V  +VE+VK+ YLVLSLP++ +SIG+AS  
Sbjct: 885  -------------KMLKFKKTKAVLQLHQRVEVVVELVKDEYLVLSLPKFGNSIGFASTR 931

Query: 1004 DYNTQKF-PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD 1062
            DYN +   P   +  GQ   AT+ +  S S   R LLLL     T  +  K        D
Sbjct: 932  DYNIRVLRPHDHYSPGQKFSATIYSFGSESVGERTLLLLADTKPTFFTYVKN-------D 984

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +G++++ +I EI  L + ++ GI   G +HITEV D       N    +  GQTV A+I+
Sbjct: 985  IGAIIEGQIQEISSLHMIIQAGINLRGNVHITEVVDHYEE--GNPLRKYNAGQTVRAKIL 1042

Query: 1123 AK-------SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            +K        N P +      +LS++PS LT ++    ++  E  V+IGQ V GYV +V 
Sbjct: 1043 SKRKTSRKHGNAPTL------DLSLRPSELTGNDSARSVITFET-VTIGQTVVGYVQEVK 1095

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
              WA L +S HL+ +LFILDS+ +PSEL+ FQ RF +G A   H+ S+N EKK + L LR
Sbjct: 1096 ENWAWLVLSPHLRGRLFILDSSDDPSELERFQERFKVGDAFQCHIRSVNHEKKQVDLSLR 1155

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
            P  +                   +GD++GGRI+++  G GGL VQ+G   +GRVH T L 
Sbjct: 1156 PKDEDFK----------------KGDLLGGRITRVRPGDGGLTVQVGWETFGRVHVTHLG 1199

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
            +  +            DP S + EG+FV+C+VL++  T++GT  +ELSLR SL G     
Sbjct: 1200 DTWMD-----------DPASLFTEGKFVRCRVLDLKPTLKGTKALELSLRPSLGGYGGFE 1248

Query: 1356 S--SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
            S  S  + +  +    +  + +L  +M VQG+VK+VT KGCF++LS  +DA++LL NLS 
Sbjct: 1249 SLPSYQTLERKSNACIVNSVSELQQDMQVQGFVKDVTEKGCFVILSPSVDARILLKNLSS 1308

Query: 1414 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
             +V++P + FP GKLV+GR+LSV PLS  VE++L TS        E ++      GDIV 
Sbjct: 1309 SFVQNPAEMFPAGKLVSGRILSVRPLSGHVEMSLTTS-------QESSSWKTFCAGDIVS 1361

Query: 1474 GQIKRVESYGLFITIENTNLV 1494
            G+I+ +E++G+F+ + ++++V
Sbjct: 1362 GRIRSIEAFGMFVALADSDVV 1382



 Score = 44.7 bits (104), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 143/379 (37%), Gaps = 46/379 (12%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT--NWKNDYNQHK 371
            I+ + +  G  V   VQ + EN   L    +  G + I    +  P+    ++  +    
Sbjct: 1076 ITFETVTIGQTVVGYVQEVKENWAWLVLSPHLRGRLFILDSSDD-PSELERFQERFKVGD 1134

Query: 372  KVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
                 I  V+   + V L+L P            K GD+    ++ RV  G G L     
Sbjct: 1135 AFQCHIRSVNHEKKQVDLSLRP-------KDEDFKKGDLLG-GRITRVRPGDGGL--TVQ 1184

Query: 432  TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL----------------------- 468
                T   V ++ + +  +      + EG  VR R+L                       
Sbjct: 1185 VGWETFGRVHVTHLGDTWMDDPASLFTEGKFVRCRVLDLKPTLKGTKALELSLRPSLGGY 1244

Query: 469  -GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
             GF  L    T   K++A   +V + S+++  M V+G V  V   G  V     V A   
Sbjct: 1245 GGFESLPSYQTLERKSNAC--IVNSVSELQQDMQVQGFVKDVTEKGCFVILSPSVDARIL 1302

Query: 528  LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
            L ++S   +  P + F  G  +  R+L V+     V    T  +      SS+       
Sbjct: 1303 LKNLSSSFVQNPAEMFPAGKLVSGRILSVRPLSGHVEMSLTTSQES----SSWKTFCAGD 1358

Query: 588  ITHGWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
            I  G I  IE  G FV   +  V G    SE+  D   +  ++Y VGQ V+ +I+     
Sbjct: 1359 IVSGRIRSIEAFGMFVALADSDVVGLCHVSEVSDDFIQDLPTLYKVGQRVQVKILKVDAE 1418

Query: 647  SRRINLSFMMKPTRVSEDD 665
            ++RI+L   MK + ++ DD
Sbjct: 1419 TKRISLG--MKASFLTPDD 1435


>gi|255581556|ref|XP_002531583.1| programmed cell death protein, putative [Ricinus communis]
 gi|223528779|gb|EEF30786.1| programmed cell death protein, putative [Ricinus communis]
          Length = 607

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/620 (74%), Positives = 513/620 (82%), Gaps = 21/620 (3%)

Query: 1   MAASSRKSQK----KSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPR 56
           MAA S+  +K    KS   G KFNKASK  FK  KK  NDAV  + +A   +DD P FPR
Sbjct: 1   MAAPSKNKKKGPDRKSKDAGTKFNKASKKPFKAKKKGSNDAVAPEAMAFQLEDDAPEFPR 60

Query: 57  GGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANET-VDDLGSLFGDGI 115
           GG  SL++RER+EI AEVDAEFE+ ER L    KK K K  +  + +  DDLGSLFGDG+
Sbjct: 61  GGASSLSRREREEIRAEVDAEFESEERSLMMMKKKNKGKKLQNKSHSEADDLGSLFGDGL 120

Query: 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
           +GKLPR+AN IT KNIS GMK+WGVVAEVNEKDLVI LPGGLRGLAR+ DALDP+  +EI
Sbjct: 121 TGKLPRFANNITFKNISPGMKVWGVVAEVNEKDLVISLPGGLRGLARSVDALDPVFGDEI 180

Query: 176 EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 235
           E  E NL P+IF  GQLVSC VLQLD+DKK+ G RKI LSLRLSLL+KG SL+ +QEGMV
Sbjct: 181 EDIEGNL-PSIFCTGQLVSCTVLQLDEDKKDSGTRKIRLSLRLSLLHKGFSLDAIQEGMV 239

Query: 236 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY 295
           LTAYVKSIEDHGYILHFGLPSFTGFLP+N+  E+S  +VK G LLQG+VR +D+TRKVVY
Sbjct: 240 LTAYVKSIEDHGYILHFGLPSFTGFLPKNSQDESSSAEVKTGQLLQGIVRRVDKTRKVVY 299

Query: 296 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
           LSSDP  VSKCV KDLKGISIDLLVPGMMV+ RVQS L NG+MLSFLTYF+GTVDIFHLQ
Sbjct: 300 LSSDPSAVSKCVVKDLKGISIDLLVPGMMVNARVQSTLGNGIMLSFLTYFSGTVDIFHLQ 359

Query: 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK 415
           NTF  +NW++DYN +KKVNARILFVDP++RAVGLTLN +L+HN APP+HVKVGDIYD +K
Sbjct: 360 NTFSASNWRDDYNNNKKVNARILFVDPSTRAVGLTLNQHLVHNHAPPTHVKVGDIYDGAK 419

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           VVRVD+ +GLLL+IPS PVSTPAYV+               YKEGS VRVRILG+RHLEG
Sbjct: 420 VVRVDKSMGLLLEIPSAPVSTPAYVS---------------YKEGSKVRVRILGYRHLEG 464

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
           LATGILKASAFEG VFTHSDVKPGMVV+ K+IAVDSFGAIVQFPGG+KALCPL HMSEFE
Sbjct: 465 LATGILKASAFEGPVFTHSDVKPGMVVRAKIIAVDSFGAIVQFPGGLKALCPLRHMSEFE 524

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
           I KP KKFKVGAEL+FRVLG KSKRITVTHKKTLVKSKLAILSSYAEATD LITHGWITK
Sbjct: 525 IAKPRKKFKVGAELLFRVLGCKSKRITVTHKKTLVKSKLAILSSYAEATDGLITHGWITK 584

Query: 596 IEKHGCFVRFYNGVQGFAPR 615
           IEKHGCFV FYNGVQGFAPR
Sbjct: 585 IEKHGCFVHFYNGVQGFAPR 604



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P M+V+  +  V S G  +     L A   L ++S+  +  P K+F +G  +  RVL
Sbjct: 484  DVKPGMVVRAKIIAVDSFGAIVQFPGGLKALCPLRHMSEFEIAKPRKKFKVGAELLFRVL 543

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITIEN 1490
              +  SKR+ VT K    +T  +S++  LS+      G I  G I ++E +G F+   N
Sbjct: 544  GCK--SKRITVTHK----KTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVHFYN 596



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 17/131 (12%)

Query: 667 VKLGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
           VK G +V   ++ V +  A+V +    G  K   P  H+++          + KP  +F 
Sbjct: 485 VKPGMVVRAKIIAVDSFGAIVQF---PGGLKALCPLRHMSEF--------EIAKPRKKFK 533

Query: 726 ---QLL--VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
              +LL  VL  +S  + ++ K +L+ S   + S  +      + HG++  I + GCFV 
Sbjct: 534 VGAELLFRVLGCKSKRITVTHKKTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVH 593

Query: 781 FLGRLTGFAPR 791
           F   + GFAPR
Sbjct: 594 FYNGVQGFAPR 604


>gi|302781194|ref|XP_002972371.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
 gi|300159838|gb|EFJ26457.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
          Length = 1634

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1382 (37%), Positives = 772/1382 (55%), Gaps = 199/1382 (14%)

Query: 135  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 194
            M+LWG V+ +N+ DL I LP GL G  +  +A         E   D              
Sbjct: 1    MRLWGAVSGINKTDLSISLPNGLHGFVKIDEAFP-------EYTPD-------------- 39

Query: 195  CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
                 L DDK                              ++ + VKSIEDHGY+L FGL
Sbjct: 40   -----LSDDK------------------------------LMISSVKSIEDHGYVLSFGL 64

Query: 255  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
            P  +GFL   +   + G  ++ G ++Q  V +ID+ R V+ L++          K+ + +
Sbjct: 65   PEMSGFLLHKD---HQGEKLRVGEIMQSCVSAIDKKRGVINLTT---MQLSSAMKEHENL 118

Query: 315  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
            S+  LVPG +V+  VQ++L NGV+LSFLTYFTG VDIFHLQ+   + +W  DY + K+  
Sbjct: 119  SLGTLVPGALVNGCVQAVLRNGVLLSFLTYFTGIVDIFHLQSVLSSKDWAQDYTEGKRFK 178

Query: 375  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
            ARI+F+D  ++ + L+L  +L+   A    +  GD+ + +++ RVD  +GLLL++P+TP 
Sbjct: 179  ARIIFIDARTKRIRLSLRSHLVD--AEIVSLNRGDVIEAARIKRVDPAIGLLLELPATP- 235

Query: 435  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
                YV  +DV++ +V KLEKK+K+G  VR RI+GFR ++ +AT  LK            
Sbjct: 236  HVAGYVNHADVSDVKVDKLEKKFKDGQRVRARIIGFRLMDRMATLTLK------------ 283

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
               PG +V G +  V++ GA+V   GGVK LCP+ HMSE+  +KP  KF+VG ++ FRVL
Sbjct: 284  ---PGALVHGVITRVEACGALVSL-GGVKGLCPVQHMSEYNRLKPSSKFEVGKKMKFRVL 339

Query: 555  GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
                + K++++T KK+LV SKL ++++Y +A D L+THGWI  I   GCF+ FYN V+G 
Sbjct: 340  QYDHEKKKLSLTFKKSLVSSKLPLITAYEDAVDGLVTHGWIQGISNIGCFMEFYNHVKGL 399

Query: 613  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
              RSELG+ P     + +HVGQVVKCR++ S  + RR+ LSF M   R +    VK GS+
Sbjct: 400  VHRSELGIGPDTPIEAAFHVGQVVKCRVLESDLSKRRLRLSFNMS-LRYN----VKPGSV 454

Query: 673  VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN 732
            VS V+  +  + + + V     S  T+  EHL+D             PG           
Sbjct: 455  VSAVITQMGSSQIELQVNDDIAS--TMSYEHLSD------------TPG----------Q 490

Query: 733  ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
            E S L+L+AKYSLI++A+ LPS    + P +V+ GY+  I +  C V FL  +TG  P  
Sbjct: 491  EHSKLVLTAKYSLIDAAESLPSSIHQLSPMAVLPGYISVIHDKYCLVSFLDNVTGLVPIG 550

Query: 793  KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
             A DG   DLS+ ++VGQSVR+ +L+V+SE  +  LSLKQS C STD S +Q +FL EE 
Sbjct: 551  NASDGYLEDLSQVFFVGQSVRAQVLEVDSENEKFVLSLKQSACFSTDVSLIQGYFLEEEL 610

Query: 853  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 912
            IA L+  +     L W     IG ++E  V E  D+G++++ ++++DV GF TH+Q + +
Sbjct: 611  IAKLKEKEG----LDWGNKLQIGELVEADVQEVKDYGIILNLKDNADVVGFATHYQ-SNS 665

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVH 971
             VE G+ ++A ILDV K + +VDLSL                 QK+  K + +K  L +H
Sbjct: 666  PVEVGAAVKACILDVVKTDGIVDLSL-----------------QKRMLKFKKTKAVLQLH 708

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF-PQKQFLNGQSVIATVMALPS 1030
            Q V  +VE+VK+ YLVLSLP++ +SIG+AS  DYN +   P   +  GQ   AT+ +  S
Sbjct: 709  QRVEVVVELVKDEYLVLSLPKFENSIGFASTRDYNIRVLRPHDHYSPGQKFSATIYSFGS 768

Query: 1031 SSTAGRLLLLLKAISETETSSSK-----RAKKKSSYDV-GSLVQA-----EITEIKPLEL 1079
             S   R LLLL     T  +  K       ++   +++ GS +       +I EI  L +
Sbjct: 769  ESVGERTLLLLADTKPTFFTYVKNDIGANHRRPGLFNLSGSFILILTILYQIQEISSLHM 828

Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-------SNKPDMKK 1132
             ++ GI   G +HITEV D       N    +  GQTV A+I++K        N P +  
Sbjct: 829  IIQAGISLRGNVHITEVVDQYEE--GNPLRKYNAGQTVRAKILSKRKTSRKHGNAPTL-- 884

Query: 1133 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
                +LS++PS LT ++    ++  E  V+IGQ V GYV +V   WA L +S HL+ +LF
Sbjct: 885  ----DLSLRPSELTGNDSARSVITFET-VTIGQTVVGYVQEVKESWAWLVLSPHLRGRLF 939

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            ILDS+ +PSEL+ FQ RF +G A   H+ S+N EKK + L LRP  +             
Sbjct: 940  ILDSSDDPSELERFQERFKVGDAFQCHIRSVNHEKKQVDLSLRPKDEDFK---------- 989

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1312
                  +GD++GGRI+++  G GGL VQ+G   +GRVH T L +  +            D
Sbjct: 990  ------KGDLLGGRITRVRPGDGGLTVQVGWETFGRVHVTHLGDTWMD-----------D 1032

Query: 1313 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS--SDLSTDVDTPGKHL 1370
            P S + EG+FV+C+VL++  T++GT  +ELSLR SL G     S  S  + +  +    +
Sbjct: 1033 PASLFTEGKFVRCRVLDLKPTLKGTKSLELSLRPSLGGHGGFESLPSYQTLERKSNACIV 1092

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
              + +L  +M VQG+VK++T KGCF++LS  +DA++LL NLS  +V++P + FP GKLV+
Sbjct: 1093 NSVSELQQDMQVQGFVKDLTEKGCFVILSPSVDARILLKNLSSSFVQNPAEMFPAGKLVS 1152

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            GR+LSV PLS  VE++L TS        E ++      GDIV G+I+ +E++G+F+ + +
Sbjct: 1153 GRILSVRPLSGHVEMSLTTS-------QESSSWKTFCAGDIVSGRIRSIEAFGMFVALAD 1205

Query: 1491 TN 1492
            ++
Sbjct: 1206 SD 1207



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 11/199 (5%)

Query: 469  GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
            GF  L    T   K++A   +V + S+++  M V+G V  +   G  V     V A   L
Sbjct: 1073 GFESLPSYQTLERKSNAC--IVNSVSELQQDMQVQGFVKDLTEKGCFVILSPSVDARILL 1130

Query: 529  PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
             ++S   +  P + F  G  +  R+L V+     V    T  +      SS+       I
Sbjct: 1131 KNLSSSFVQNPAEMFPAGKLVSGRILSVRPLSGHVEMSLTTSQES----SSWKTFCAGDI 1186

Query: 589  THGWITKIEKHGCFVRFYN--GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
              G I  IE  G FV   +  GV G    SE+  D   +  ++Y VGQ V+ +I+     
Sbjct: 1187 VSGRIRSIEAFGMFVALADSDGV-GLCHVSEVSDDFIQDLPTLYKVGQRVQVKILKVDAE 1245

Query: 647  SRRINLSFMMKPTRVSEDD 665
            ++RI+L   MK + ++ DD
Sbjct: 1246 TKRISLG--MKASYLTPDD 1262


>gi|449502545|ref|XP_004161672.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Cucumis
           sativus]
          Length = 609

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/615 (66%), Positives = 489/615 (79%), Gaps = 25/615 (4%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           MA  SRKSQ     DG KFNK SK  F NSKK++++  + + ++L  +DDVP FPRGGG 
Sbjct: 1   MAPPSRKSQ-----DGSKFNKHSKRPF-NSKKKMSETAKPETVSLQIEDDVPDFPRGGGG 54

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
            ++Q + +++ AE D EF+  +  +  K  KK+    RK     DDL SL  +G+ G LP
Sbjct: 55  YMSQNKGEKVRAEGDKEFQNDDLKMTTKRGKKR----RKHPSNGDDLESLLNNGVVGNLP 110

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED 180
           +YANKITLKNI+  MK WGVVAEVN+KDLVI LPGGLRGL  AA+A DPIL+ E+E  E 
Sbjct: 111 KYANKITLKNINPRMKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEH 170

Query: 181 NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
           +LLP +FHVGQLV C+VL++DDDKKE GKRKIWLSLRLS+LYK  +L+ +QEGMVLT+YV
Sbjct: 171 DLLPVMFHVGQLVPCVVLKVDDDKKESGKRKIWLSLRLSILYKDFTLDLLQEGMVLTSYV 230

Query: 241 KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
           KSIEDHGYILHFGL SFTGFLP+   ++ S  +V  G LLQ VVRSID+TRKVVY SSD 
Sbjct: 231 KSIEDHGYILHFGLTSFTGFLPKTKQSDQSENEVHVGQLLQCVVRSIDKTRKVVYFSSDQ 290

Query: 301 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
           D VS  V KDLKGISIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F +
Sbjct: 291 DIVSSSVAKDLKGISIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHS 350

Query: 361 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
           +NWK+ YNQ+ K+NARILF+DP++RAVGLTL P+L+ N+A P H+++GDIYD +KVVRVD
Sbjct: 351 SNWKDFYNQNMKMNARILFIDPSTRAVGLTLIPHLVRNKAAPPHLRIGDIYDSAKVVRVD 410

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
           RG GLLL++PS+P STP +V+               +KEGS VRVRILGFRHLEGLA G 
Sbjct: 411 RGFGLLLEVPSSPESTPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGT 455

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           LKASAFEG VF++SDVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEIVKP 
Sbjct: 456 LKASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIVKPR 515

Query: 541 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           KKFKVGAEL+FRVLG KSKRITVTHKKTLVKSKL +LSSYA+AT  L+THGWITKI KHG
Sbjct: 516 KKFKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIXKHG 575

Query: 601 CFVRFYNGVQGFAPR 615
           CFVRFYNGVQGFAPR
Sbjct: 576 CFVRFYNGVQGFAPR 590



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 15/130 (11%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 725
           VK G+L+   V VV     +V     G  K   P  H+++          ++KP  +F  
Sbjct: 471 VKPGTLIRAKVIVVDDFGAIVQF--PGGLKALCPLSHMSEF--------EIVKPRKKFKV 520

Query: 726 --QLL--VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
             +L+  VL  +S  + ++ K +L+ S  ++ S  +      V HG++  I + GCFVRF
Sbjct: 521 GAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRF 580

Query: 782 LGRLTGFAPR 791
              + GFAPR
Sbjct: 581 YNGVQGFAPR 590



 Score = 41.2 bits (95), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P  +++  V  V   G  +     L A   LS++S+  +  P K+F +G  +  RVL
Sbjct: 470  DVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIVKPRKKFKVGAELIFRVL 529

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIEN 1490
              +  SKR+ VT K    +T  +S++  LS   +   G +  G I ++  +G F+   N
Sbjct: 530  GCK--SKRITVTHK----KTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRFYN 582


>gi|6671953|gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis
            thaliana]
          Length = 1111

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/716 (54%), Positives = 510/716 (71%), Gaps = 56/716 (7%)

Query: 794  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 1    AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 60

Query: 854  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 61   SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 120

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 121  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 178

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 179  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 238

Query: 1034 AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                      
Sbjct: 239  SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 276

Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1151
               VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 277  ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 331

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 332  DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 391

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1260
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 392  IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 451

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQ          
Sbjct: 452  DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQ---------- 501

Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSP 1378
             FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP
Sbjct: 502  -FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSP 559

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
            +M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEP
Sbjct: 560  DMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEP 619

Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            LSKR+EVTLKT ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T +V
Sbjct: 620  LSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMV 675



 Score = 47.0 bits (110), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+ P M V+G V    S G  +     V+A   L ++ +  + +P K+F VG  +  RVL
Sbjct: 556 DLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVL 615

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH------GWITKIEKHGCFVRF- 605
            V+  SKRI VT K      +       +E+ D    H      G I ++E  G F+   
Sbjct: 616 NVEPLSKRIEVTLKTVNAGGR-----PKSESYDLKKLHVGDMISGRIRRVEPFGLFIDID 670

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMM----- 656
             G+ G    S+L  D      + Y  G+ V+ +I+      +RI+L    S++M     
Sbjct: 671 QTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDD 730

Query: 657 KPTRVSEDD 665
           K   +SED+
Sbjct: 731 KAQPLSEDN 739



 Score = 43.5 bits (101), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
           I+ L P M V   V++ +  G  +         V + +L +TF     + ++   K V  
Sbjct: 554 IEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTF-VKEPEKEFPVGKLVTG 612

Query: 376 RILFVDPTSRAVGLTLNPYLLHNRAPPSH------VKVGDIYDQSKVVRVDRGLGLLLDI 429
           R+L V+P S+ + +TL       R P S       + VGD+    ++ RV+   GL +DI
Sbjct: 613 RVLNVEPLSKRIEVTLKTVNAGGR-PKSESYDLKKLHVGDMI-SGRIRRVE-PFGLFIDI 669

Query: 430 PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 468
             T +    +  IS ++++ +  ++ +YK G  VR +IL
Sbjct: 670 DQTGMVGLCH--ISQLSDDRMENVQARYKAGESVRAKIL 706


>gi|308808252|ref|XP_003081436.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
 gi|116059899|emb|CAL55958.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
          Length = 1947

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/1424 (32%), Positives = 770/1424 (54%), Gaps = 140/1424 (9%)

Query: 121  RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI---------- 170
            +Y   +  K++ +G+KL GVV+EV  + LV+ LP GLRG    A+A D            
Sbjct: 104  KYVETLKYKSLRSGVKLLGVVSEVTARGLVMSLPDGLRGTVARAEASDVFRGATRSAGAE 163

Query: 171  --------LDNEIEANEDNL-LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                     D+E E  E+ + L +++  GQ++ C+VL LD  K + G ++I LSLRL  +
Sbjct: 164  SADDESESSDDEFEGEEETISLESLYEPGQVLRCVVLSLD--KGKTGGKRIELSLRLENV 221

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQ 281
              G+  +++ EG V  A VKSIEDHGYIL FG+   +GFLP+ ++A +  + ++ G +L 
Sbjct: 222  CAGIGKDSLVEGSVAPAMVKSIEDHGYILDFGIAGTSGFLPKKSVAND--LTIRRGKILD 279

Query: 282  GVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
             V+ +     K  + ++SD   V+  V+ +    ++  L+PGM+V++RV+ +L +G++ S
Sbjct: 280  VVITATPTGNKGYFTVTSDQKRVTSSVSHETSATNVSTLLPGMLVNSRVKQVLADGILCS 339

Query: 341  FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA 400
            F+T+F+GTVD F   +   T    + +   +++ AR++FVD  ++ V LTL P+LL + +
Sbjct: 340  FMTFFSGTVDCFQTGSVATTKGVASAFKVGQRMRARVIFVDAVAKRVCLTLLPHLLEHTS 399

Query: 401  PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
              +  K+G ++  + + RVD G G+ L +        AY  +S +++E V K+EKK+K G
Sbjct: 400  I-TLPKLGKVFQTATIARVDAGQGVALSVSDGDDHIAAYAHVSQLSDERVEKVEKKFKIG 458

Query: 461  SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 520
              V VR++G R ++G+ +  LK+S      F+  ++ PGM+V G+V+AV+ +GAIV+   
Sbjct: 459  RSVNVRVIGHRLMDGIVSVSLKSSVMAQPFFSLEELTPGMLVNGEVVAVEHYGAIVKLAE 518

Query: 521  GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILS 578
            G+KALCP  H+S+        K   GA+L FRVL V   S+R TV+HK+TL+KS+L +++
Sbjct: 519  GIKALCPPLHVSDIVGRTTSSKVSPGAKLKFRVLNVDKNSRRATVSHKRTLIKSELPVIA 578

Query: 579  SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
            S  +A    +THG +T + ++G F+  Y  ++G A  ++LGL    +PS  + VGQVV+ 
Sbjct: 579  SLEDALPGAVTHGVVTGVNEYGVFISLYGDLRGLANVNDLGLLSDQKPSDAFGVGQVVRV 638

Query: 639  RIMSSIPASRRINLS-------------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 685
             I+S+  AS R+ LS              M+  +       + + + V   V   T N  
Sbjct: 639  TIVSA-DASGRLRLSLAAGVALEAKTPGLMINASAADLTPGIIVETAVVTHVSAQTGNVE 697

Query: 686  VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
            VV+   KG   G I   HL+DH   AT + SV+ PG +   L+VL+ + +  +LS K SL
Sbjct: 698  VVFTAEKGNVPGIIALAHLSDHPLTATGLSSVLNPGDKIGPLVVLEGKPTRAVLSRKLSL 757

Query: 746  INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
            + S+Q  +LP+ A    P SV  GYV +    G FVRFLG+LTG AP S+ VDG  AD+ 
Sbjct: 758  VESSQNSKLPASAEEATPGSVFPGYVASATSAGVFVRFLGKLTGLAPPSQLVDGVSADIH 817

Query: 804  KTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSS--TDASFMQEHF----LLEEKIAM 855
              + VG++V + +L V++ T   R++LSLK S  SS  +DA  ++  F    LL+E++A 
Sbjct: 818  DMFPVGKTVNALVLAVDTSTSPPRLSLSLKLSATSSPLSDAPLIRSFFNDIELLDERVA- 876

Query: 856  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT-V 914
              ++   G   +  +    G+ ++  V+E+ ++GV++     S+  G +T HQL  +   
Sbjct: 877  --NADDVGISPETAKSLQPGTWMDVTVNETKEYGVLMDMAIDSNAVGLVTPHQLPESVEF 934

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG  ++  +LDV++ E +VD+ +++  ++RF+    N+ A  K  KR     L V   V
Sbjct: 935  ESGDAVKCYVLDVSRREGVVDMGMRS-GLERFKR---NKTASGKSLKR-----LKVGDEV 985

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             A VE+VK  Y V SLP+++  IGYASV   N + +   ++F   Q V A V  LP  + 
Sbjct: 986  TADVELVKAEYAVFSLPDHSGLIGYASVHHLNRSYEDATQRFTPAQRVKAIVAQLPDGAN 1045

Query: 1034 AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
             GRLLL +       T SS   K       G+LV+  ++EI+PL+  +       GR++I
Sbjct: 1046 -GRLLLTVPV-----TISSSGGK----IAAGTLVKGVVSEIQPLQALVALPNNARGRLYI 1095

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
            +E +  +    E   ++  +G T+ A ++  +     ++  L +LS+            K
Sbjct: 1096 SEFDLTE----EKPLASVSVGSTIEATVLGLAG----ERGGLLDLSVH----------RK 1137

Query: 1154 LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHI 1212
              F    VS+G  +  YV  +  +   +T++  + + +  ++++ + SEL E  + RF I
Sbjct: 1138 SAFSLDGVSVGDSLNAYVLSITQDGLKVTVAPGVTSFIPKIETSDKASELSESLETRFVI 1197

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G+ V    + I   K+ + L LR                    F      VG ++  I++
Sbjct: 1198 GQRVRATAVDIKLNKRRIDLTLR----------------TESVFGSNKVCVGAKLHGIVT 1241

Query: 1273 GV---GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
             V    G++VQIG H +GR+H T+L            DE + +P + Y  G  V+ +VL 
Sbjct: 1242 RVVKHAGVMVQIGSHSFGRIHLTDLS-----------DELKEEPSASYAAGAVVQVRVLN 1290

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
            +S     +  ++LS R+S   MSS   + L  D +     ++ + +L P   ++GYVK  
Sbjct: 1291 VS----PSGEIDLSTRASR--MSS--KTILPEDAE-----VQDVANLVPGQRIKGYVKAT 1337

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            T KGCF+ LSR +DA   LSNL+D ++  P   FP GKLV GR++S +    RVE++L+ 
Sbjct: 1338 TKKGCFVALSRSIDAMCKLSNLADDFIADPIASFPPGKLVQGRIVSADAAKGRVEISLRE 1397

Query: 1450 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             ++ +   +++   S + VG +++G ++RV+ YG+FI ++ T L
Sbjct: 1398 RENSSQGNADV---SGVDVGSVMMGTVRRVQPYGVFIGLDGTKL 1438



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 167/782 (21%), Positives = 298/782 (38%), Gaps = 107/782 (13%)

Query: 109  SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
            SL     + KLP  A + T      G    G VA      + +   G L GLA  +  +D
Sbjct: 756  SLVESSQNSKLPASAEEAT-----PGSVFPGYVASATSAGVFVRFLGKLTGLAPPSQLVD 810

Query: 169  PILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK----- 223
                  + A+  ++ P    VG+ V+ +VL +D         ++ LSL+LS         
Sbjct: 811  -----GVSADIHDMFP----VGKTVNALVLAVD---TSTSPPRLSLSLKLSATSSPLSDA 858

Query: 224  -----------------------GLSLET---VQEGMVLTAYVKSIEDHGYILHFGLPS- 256
                                   G+S ET   +Q G  +   V   +++G ++   + S 
Sbjct: 859  PLIRSFFNDIELLDERVANADDVGISPETAKSLQPGTWMDVTVNETKEYGVLMDMAIDSN 918

Query: 257  FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI 316
              G +  + L E+  ++ + G  ++  V  + R   VV +            K   G S+
Sbjct: 919  AVGLVTPHQLPES--VEFESGDAVKCYVLDVSRREGVVDMGMRSGLERFKRNKTASGKSL 976

Query: 317  DLLVPGMMVSTRVQSILENGVMLSFLTY--FTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
              L  G  V+  V+ +     + S   +    G   + HL  ++     +  +   ++V 
Sbjct: 977  KRLKVGDEVTADVELVKAEYAVFSLPDHSGLIGYASVHHLNRSYEDATQR--FTPAQRVK 1034

Query: 375  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
            A +  +   +    L   P  + +      +  G +     VV   + L  L+ +P+   
Sbjct: 1035 AIVAQLPDGANGRLLLTVPVTISSSG--GKIAAGTLV--KGVVSEIQPLQALVALPNN-A 1089

Query: 435  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
                Y++  D+ EE   K       GS +   +LG   L G   G+L  S      F+  
Sbjct: 1090 RGRLYISEFDLTEE---KPLASVSVGSTIEATVLG---LAGERGGLLDLSVHRKSAFSLD 1143

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
             V  G  +   V+++   G  V    GV +  P     + E      +     E  F V+
Sbjct: 1144 GVSVGDSLNAYVLSITQDGLKVTVAPGVTSFIP-----KIETSDKASELSESLETRF-VI 1197

Query: 555  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT----HGWITKIEKH-GCFVRFYNGV 609
            G + +   V  K    +  L + +     ++++      HG +T++ KH G  V+  +  
Sbjct: 1198 GQRVRATAVDIKLNKRRIDLTLRTESVFGSNKVCVGAKLHGIVTRVVKHAGVMVQIGSHS 1257

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
             G    ++L  +   EPS+ Y  G VV+ R+++  P S  I+LS   + +R+S   ++  
Sbjct: 1258 FGRIHLTDLSDELKEEPSASYAAGAVVQVRVLNVSP-SGEIDLS--TRASRMSSKTILPE 1314

Query: 670  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT----------------EHLADHLEHATV 713
             + V  V ++V    +      KGY K T                    +LAD      +
Sbjct: 1315 DAEVQDVANLVPGQRI------KGYVKATTKKGCFVALSRSIDAMCKLSNLADDFIADPI 1368

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
              +   PG      +V  + +   +  +     NS+Q   +D S +   SV+ G V  + 
Sbjct: 1369 --ASFPPGKLVQGRIVSADAAKGRVEISLRERENSSQG-NADVSGVDVGSVMMGTVRRVQ 1425

Query: 774  ETGCFVRFLG-RLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              G F+   G +L+G    S   D +   DLS     G+ VR  +L++N+ET +I+L  K
Sbjct: 1426 PYGVFIGLDGTKLSGLCHISMFADARINDDLSLHVRQGERVRVKVLEINAETKKISLGCK 1485

Query: 832  QS 833
             S
Sbjct: 1486 AS 1487


>gi|145350993|ref|XP_001419873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580106|gb|ABO98166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1869

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1413 (32%), Positives = 767/1413 (54%), Gaps = 127/1413 (8%)

Query: 116  SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
            SG   +Y   +  K++  G KL G+++EV  + LV+ LP GLRG    A+      +++ 
Sbjct: 98   SGGGAKYVETLKYKSLRPGAKLLGIISEVTARGLVMSLPDGLRGTVARAEVAGTSDEDDD 157

Query: 176  EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 235
            + + +  L  ++  GQ++ C V+ L+  K + G ++I LSLRL  + +GL+ E++ EG V
Sbjct: 158  DDDAEASLELLYEPGQVLRCAVVSLE--KGKTGGKRIELSLRLEKVCEGLTKESLTEGSV 215

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY 295
              A V+S+EDHGYIL FG+   +GFLP+ N+A + G +++ G ++  V+    +  K  +
Sbjct: 216  APAVVQSVEDHGYILSFGIADTSGFLPKKNVASDLG-EIRKGRIIDVVITGAPKGNKGYF 274

Query: 296  -LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
             ++SD   +   V  +    ++D L+PGM+V++R++ IL +GV +SF+TYF+GTVD FH 
Sbjct: 275  TVTSDQKRIKTSVAHETSATNVDTLLPGMLVNSRIKQILSDGVSVSFMTYFSGTVDCFHT 334

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
                 +    + +   +++ ARI+FVD  S+ V LTL P+LL + A     K+G  +  +
Sbjct: 335  GALATSKGVSSAFKVGQRMRARIIFVDSASKRVSLTLLPHLL-DYASIELPKLGKTFQTA 393

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            K+ RVD G G+ L I         Y  +S +++E V K+EKK+K G  V VR++G R L+
Sbjct: 394  KIERVDAGQGVALSISDGKNDIAGYAHVSQLSDERVEKVEKKFKIGRSVSVRVIGHRLLD 453

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
            G+ +  LK+S      F+  ++ PGM+V G+V+AV+ +GAIV+   G+KALCP  H+S+ 
Sbjct: 454  GVVSVSLKSSVMAQPFFSLDELTPGMLVNGEVLAVEHYGAIVKLAEGIKALCPPLHISDI 513

Query: 535  EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
                   K   GA+L FRVL V   S+R TV+HK+TL+KS+L ++    +A    ITHG 
Sbjct: 514  VGRTTSAKVAPGAKLKFRVLNVDRNSRRATVSHKRTLIKSELPVIGQIEDAVPGSITHGV 573

Query: 593  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
            +T + ++G FV  Y  ++G A  ++LGL    +PS  + VGQVV+ +++S+   S R+ L
Sbjct: 574  VTGVNEYGVFVSLYGDLKGLAGLNDLGLLRDQKPSDAFGVGQVVRVQVVSA-DTSGRLRL 632

Query: 653  SF-------------------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
            S                     +KP  V E  +V    + SG     T N  VV+ + +G
Sbjct: 633  SLASGDADGNSASMIINASADALKPGHVVEKAVVT--HVASG-----TGNVEVVFSMEEG 685

Query: 694  YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-- 751
               G +P  HL+DH   A  + +V+ PG E   L+VL+ +S+  ++S K SL+ S+++  
Sbjct: 686  NIPGVVPLAHLSDHPLTAQGLSAVLNPGDEIGPLVVLEGKSTRAVMSRKLSLVESSREGK 745

Query: 752  LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811
            LP+ A      +V  GYV +    G FVRFLGRLTG AP S+  DG   D+ + + VG++
Sbjct: 746  LPATAKEATLGAVFPGYVASATAAGVFVRFLGRLTGLAPPSQLTDGTTGDVHEMFPVGKT 805

Query: 812  VRSNIL--DVNSETGRITLSLKQSCCSS--TDA----SFMQEHFLLEEKIAMLQSSKHNG 863
            V + IL  D ++ T R++LSLK S  SS  +DA    SF Q+   L+++      ++  G
Sbjct: 806  VNALILSVDTSTPTPRLSLSLKVSATSSPLSDAPLVRSFFQDIEFLDDRDV---GAEDVG 862

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL-AGATVESGSVIQA 922
               +  +    G+ ++  V+E+ D+GV++     S+V G +T HQ+    T  +G  ++ 
Sbjct: 863  ISPETAKSLKPGTWMDVSVNETKDYGVLMDVPIDSNVVGLVTPHQIPVDTTFTAGDEVKG 922

Query: 923  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
             +LDV++ E +VD+ ++    D   +   N+ +  K  K+     L V   V+A VE++K
Sbjct: 923  YVLDVSRREGVVDIGMR----DGLGKFKRNKTSSGKSLKK-----LKVGDQVSAEVELIK 973

Query: 983  ENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL 1041
              Y+ LSLPE+N  IG+A V   N + +   ++F   Q V A +  LP     GRLLL +
Sbjct: 974  AEYVALSLPEHNGLIGFAPVHHLNLRYEDASERFTPTQCVKAVIAQLPEGEM-GRLLLTV 1032

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
              +++  T+S + A        G+LV+  ++E++ L+  +       GR++I+E +  + 
Sbjct: 1033 -PVTKGTTASGRIA-------AGTLVKGVVSEVQNLQALVALPNNARGRLYISEFSPGED 1084

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
              +E++     +G TV A ++  +      +  L +LS+            K  F   DV
Sbjct: 1085 TPLESI----SVGSTVEATVMGLAG----DRGGLLDLSMH----------RKSAFVLEDV 1126

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKAVTGHV 1220
            S+G  V+ YV  V ++   +TI+  + + +  ++++ + SEL  +   RF +G+ V+  +
Sbjct: 1127 SVGDDVSAYVVSVTDDGIKVTIAPGITSFIPKIETSDKSSELAMKLSSRFTVGERVSAII 1186

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            + +   KK + L LR   DG S            + +  G  V G I++++  V GL+VQ
Sbjct: 1187 VGVKATKKRVDLSLR--TDGASG----------SSRVCVGAKVQGIITRVVENV-GLMVQ 1233

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G H  GRVH T++            DE   DP + Y+ GQ V+ +VL  S        +
Sbjct: 1234 LGSHSVGRVHLTDMA-----------DEYDDDPCAKYEAGQVVQVRVLNAS----SNGEL 1278

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
            +LS+R+S      T+ +D           +  I +L P   V+GYVK  + KGCFI LSR
Sbjct: 1279 DLSMRASRLSSKRTSPTD---------PEITDISNLVPGQRVKGYVKATSKKGCFIALSR 1329

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1460
             +DA   LSNL+D ++  P K FP GKLV GR++S +    RVE+  + +D+   +    
Sbjct: 1330 GIDAMCKLSNLADSFIADPAKTFPPGKLVEGRIVSADAAKGRVELAFRETDATQGNA--- 1386

Query: 1461 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             ++S + VGD++IG ++RV+ YG+F++++ T L
Sbjct: 1387 -DVSTVKVGDVLIGTVRRVQPYGVFVSLDGTKL 1418



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 162/393 (41%), Gaps = 37/393 (9%)

Query: 460  GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
            GS V   ++G   L G   G+L  S      F   DV  G  V   V++V   G  V   
Sbjct: 1093 GSTVEATVMG---LAGDRGGLLDLSMHRKSAFVLEDVSVGDDVSAYVVSVTDDGIKVTIA 1149

Query: 520  GGVKALCPLPHMSEFE---IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
             G+ +  P    S+      +K   +F VG  +   ++GVK+ +  V          L++
Sbjct: 1150 PGITSFIPKIETSDKSSELAMKLSSRFTVGERVSAIIVGVKATKKRV---------DLSL 1200

Query: 577  LSSYAEATDRLIT----HGWITKI-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
             +  A  + R+       G IT++ E  G  V+  +   G    +++  +   +P + Y 
Sbjct: 1201 RTDGASGSSRVCVGAKVQGIITRVVENVGLMVQLGSHSVGRVHLTDMADEYDDDPCAKYE 1260

Query: 632  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
             GQVV+ R+++   AS    L   M+ +R+S          ++ + ++V    V  YV A
Sbjct: 1261 AGQVVQVRVLN---ASSNGELDLSMRASRLSSKRTSPTDPEITDISNLVPGQRVKGYVKA 1317

Query: 692  KGYSKGTIPTEHLADHLEHATVMKS--VIKPGYEF-------DQLLVLDNESSNLLLSAK 742
                   I      D +   + +    +  P   F        +++  D     + L+ +
Sbjct: 1318 TSKKGCFIALSRGIDAMCKLSNLADSFIADPAKTFPPGKLVEGRIVSADAAKGRVELAFR 1377

Query: 743  YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRAD 801
             +    A Q  +D S +    V+ G V  +   G FV   G +L+G    S   D + +D
Sbjct: 1378 ET---DATQGNADVSTVKVGDVLIGTVRRVQPYGVFVSLDGTKLSGLCHISMFADARISD 1434

Query: 802  -LSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             L+     G+ VR+ +L++N+ET +I+L +K S
Sbjct: 1435 DLASHVRQGERVRTKVLEINTETNKISLGIKAS 1467


>gi|384249900|gb|EIE23380.1| hypothetical protein COCSUDRAFT_28807 [Coccomyxa subellipsoidea
            C-169]
          Length = 1757

 Score =  637 bits (1642), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 446/1415 (31%), Positives = 733/1415 (51%), Gaps = 121/1415 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + ++++S G K+WG VAE+  ++L+I LP GL+G   AA+ + P+      A +   L +
Sbjct: 1    MLVQSLSKGAKIWGTVAEITHRELIISLPHGLKGHVPAAEVMHPL------AADVPSLSS 54

Query: 186  IFHVGQLVSCIVLQLDDDKKEI-----GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
            +F  GQLV C ++ L D    +     G+++I LSL ++ +  G+    +  GM L A V
Sbjct: 55   LFRAGQLVQCSIVDLQDGDSGVAGGKAGRKRIVLSLHVAKVNAGIGPAALIAGMQLPACV 114

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT------RKVV 294
            +S+EDHG++L  G+   T FL R N  +    + +P  LL G V  +  T      R +V
Sbjct: 115  RSVEDHGFLLTTGVKGVTAFLERTNWLKACSGEARP--LLPGAVLPVTVTAAARPGRPLV 172

Query: 295  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            ++S+DP +++K   K+ +G++I  L+PGM+V+ RV+++L +G+++SFLTYF GTVD FHL
Sbjct: 173  HVSADPKSLAKGAVKEWEGLTIGSLLPGMLVNARVRNVLSDGLLVSFLTYFNGTVDCFHL 232

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
                P  +W+  Y    +V ARI++VDP S+ V L+L P+L+   A P+   +  +++ S
Sbjct: 233  SQQPPPADWQKGYEAGARVRARIIYVDPVSKRVSLSLLPHLVAGSASPALPPINTLFEHS 292

Query: 415  KVVRVDRGLGLLL------DIPSTPVSTPA-YVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
             V RVD  LGLLL      D P+   + PA Y  IS V+E  + KL+K YK G  V  R+
Sbjct: 293  IVRRVDNALGLLLELRSEDDAPAEQPNAPAGYAHISAVSESRIEKLDKVYKVGKKVAARV 352

Query: 468  LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
            +G R ++GLA   L+ +A      +++DV PG +V G V  V+ FG  V+   G+KAL P
Sbjct: 353  IGARPMDGLAVCTLREAAVRAGTISYADVAPGSIVSGTVENVEDFGLFVKLAPGIKALVP 412

Query: 528  LPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATD 585
              HMS+    K   KFK G ++  RVL   V +++IT++ KK LV  KL   +S+ EA  
Sbjct: 413  TVHMSDSGSEKARAKFKEGQKVSGRVLEVDVAARKITLSLKKLLVGEKLPPFASWQEAAQ 472

Query: 586  R-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
                 HG++T ++++G FV F NGV+G AP  +LGL+P  +P+  + +G+ VK R++S  
Sbjct: 473  PGARAHGFVTGVQEYGVFVSFCNGVRGLAPTQQLGLEPNQDPAKQFPIGKTVKARVVSVD 532

Query: 645  PASRRINLSFMMKPTRVSEDDLVK--LGSLVSGVVDVV---TPNAVVVYVIAKGYSKGTI 699
               RR+ LSF  K    +        +G L  G +       P A  V  +      G +
Sbjct: 533  EERRRLRLSFAPKTAADAAAAAGADPMGGLQPGTILRAGEGVPGASPVLAL------GRL 586

Query: 700  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQLPSDAS 757
               HLADH      +   +  G E   LL+L+   ++  L ++ K SL+ +A QLP+   
Sbjct: 587  DAAHLADHPAAEAALSEALVDGSELGPLLILERLEKAGMLRVTRKASLLAAAAQLPAAIE 646

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             +   ++  GYV N+     FVRFLG LTG A  ++  D   +D S+ +  GQSVR+ ++
Sbjct: 647  DVKEGTLASGYVANVTADAVFVRFLGSLTGRAGLAQLADQFVSDPSRHFTEGQSVRAAVV 706

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
             V+    R T++LK S   + DA++ +  F   E    +++++ +  ++ W E   IG  
Sbjct: 707  TVDLAKQRFTVALKHSLTGAPDAAYARFLFADLETAERIRAAEPSTEQVNWAE-LAIGGR 765

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
              G VH+  ++GVV   + H+DV       Q+ G    +G+ I+  ILDV K + +VDL+
Sbjct: 766  AAGAVHDVKEYGVVCDLDAHADVVALAAPEQVEGEAT-TGTRIKGRILDVNKKDGIVDLT 824

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            LK   +              K    EA   +G    V A+VE+VK++YLVLSLP    +I
Sbjct: 825  LKASLV--AGAPKKATGKAAKAALPEAVCQVGAK--VEAVVELVKDDYLVLSLPAQQQTI 880

Query: 998  GYASVSDYN--TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS-SKR 1054
             +A+ SD+N  ++    +QF+ GQ + A V+   S    GR ++ +  +S++  +   KR
Sbjct: 881  AFAATSDFNLGSRAHNSRQFIPGQKISAVVVEQASPENGGRTIVHVPLVSDSPAAPREKR 940

Query: 1055 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
             +K +    G++V A++T +         G+      HI  +                  
Sbjct: 941  ERKPAKIPPGTIVAAKVTNMHATHA----GVELESGAHILSI------------------ 978

Query: 1115 QTVTARIIAKSN--KPDMKKSFLWELSIKPSMLTVSEIGSKL-LFEECDVSIGQRVTGYV 1171
                  ++A +N  + + +   L ELS++PS++   +   K  +    D+  GQ V GYV
Sbjct: 979  ------LLAYANLHRFEGRNHGLLELSLRPSLVAAEKGAPKPGMLSVDDLQEGQTVRGYV 1032

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
             +   + A L +S  L+ +L  LDSA + ++L  F  RF +G+++   V+ ++K++  + 
Sbjct: 1033 QETAPDCAWLVLSPALRGRLHALDSADDVTQLAAFGGRFTVGQSLRCRVVQVDKKRGQVD 1092

Query: 1232 LVLR------PFQDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            L LR        Q  ++ +T     +  N +  + E  I   +     SG  G+ V +  
Sbjct: 1093 LSLREPGAASAKQWHVTQRTPTPICAFANARCTMVEWQISSDKAIVACSGA-GVRVHLAG 1151

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS-------RTVRG 1336
            H  G V  T++ +        G+ E   + L     G FV+C+VL  +       RT  G
Sbjct: 1152 HASGHVAMTDVHD--------GFVENAIESLKA---GDFVRCRVLGRAEDKGAEKRTKEG 1200

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
            T      LR           +  ++  ++  +  +++  LS    V+GYVK V+S G F+
Sbjct: 1201 TEIKRAGLREPFASNRCEQENFPASMSNSGTQGFDEL--LSFGQQVRGYVKGVSSAGAFV 1258

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
             L+R ++A+V L+NL+DGYVE P+  FP GKLV GR+L+ E    R+E++LK+    T  
Sbjct: 1259 ALARDMEARVKLNNLADGYVEDPKTAFPQGKLVRGRILATE--HNRIELSLKSKGWAT-- 1314

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                  L +   G +V G+++R E +G+FI I+++
Sbjct: 1315 ------LEDFTEGQVVRGRVRRAEKFGVFIRIDDS 1343



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 764  VVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            VV G V    + G F+R     +TG A  S+  D +  DL   +  GQ VR+ +L V++E
Sbjct: 1323 VVRGRVRRAEKFGVFIRIDDSAVTGMAHISEVADERVDDLPSMFKPGQGVRAKVLSVDAE 1382

Query: 823  TGRITLSLKQS 833
            T R++L LK S
Sbjct: 1383 TQRLSLGLKPS 1393


>gi|440791390|gb|ELR12628.1| S1 RNA binding domain containing protein [Acanthamoeba castellanii
            str. Neff]
          Length = 1936

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 462/1508 (30%), Positives = 760/1508 (50%), Gaps = 116/1508 (7%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF------EAVERGLHKKNKKKKKKTERKANETVDDL 107
             PRGGG ++T  E  +IH + D++F         ++G     KK  +K  + A +  DD 
Sbjct: 6    LPRGGGSAVTPLEVRKIHKQADSDFLFEIKSSKGKKGAKSPAKKDTRKKRKPAEDDEDDD 65

Query: 108  GSLFGDGISG-----KLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG--- 159
                G+G++        P++   +  K+++ G  L G V +V +  + + LP GL G   
Sbjct: 66   KPKDGEGLASSVTAFNFPKFIEPLRFKSLAPGTSLLGAVTKVKDFKMHLTLPSGLTGVVP 125

Query: 160  LARAADALDPILDNEIEANEDNLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSL 216
            +    D L  +L ++++ +ED++LP +   F  GQLV C++  L++ +K   K+ + LSL
Sbjct: 126  ITEVTDTLSELLASKVD-DEDDVLPKMSAFFKPGQLVPCVIKALEEREKG-NKKNVVLSL 183

Query: 217  RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP 276
            R SLL + L++  +  GM +   VKS+EDHGYI+ FG   FTGFL ++        + + 
Sbjct: 184  RPSLLNQNLAIGNITPGMAIHGSVKSVEDHGYIISFGTNEFTGFLVKDTAEMTEDEESQT 243

Query: 277  GLLLQG-----VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 331
               + G     VV S+ R    V +  DPD  S  VTKD    +I  L  GM+++ +V+ 
Sbjct: 244  AQFVVGQPVACVVDSVKRENNTVTVHYDPDKFSTAVTKDNNVFTIQTLKAGMLINAQVKK 303

Query: 332  ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
            + + G+ L FL YF GTV   HL    P +    +Y + KKV  RI+ VD  ++    +L
Sbjct: 304  VYKQGLFLQFLGYFGGTVSSQHL--GCPLSKLSANYPEGKKVLGRIVHVDYENKMASFSL 361

Query: 392  NPYLLHNRAP--PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
             P+++  +A   P  V +G  ++ +KV  VD+  GL L++P+ P    A+V  + V++E 
Sbjct: 362  LPHIVKYQAYEFPEAVHIGQRFEAAKVTMVDKRNGLFLELPTEPAQA-AFVPATLVSDES 420

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
               L KKY+ G  V  R++    LEG+ T  +K S  +       D+  G  +KG ++ +
Sbjct: 421  EENL-KKYRMGREVVCRVVSRDPLEGVVTVAMKQSILDLAFLRREDIPIGKKLKGTILEL 479

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEF-EIVKPGKKFKVGAELVFRVLGVK--SKRITVTHK 566
               G ++     ++A CP   MS+  ++  P   FK+G  +  + L V   + R+ VT K
Sbjct: 480  VPKGMVISLTKSIRAFCPSSQMSDITQLQNPAAHFKIGDTIKCKALSVDPVAGRVIVTCK 539

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
            K+LV S L +++S+ +A   + +HG+I+ ++++G FV F+NGV G    S+L  +    P
Sbjct: 540  KSLVSSDLPVITSFEDAEPGVQSHGYISSVKEYGVFVTFFNGVTGLVGLSQLSNNFVDNP 599

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR-VSEDDL-----VKLGSLVSGVVDVV 680
              +Y  GQVVKC +++     +RI+LSF+ K  + V E++      +K+GS+VSG V  +
Sbjct: 600  EKVYTAGQVVKCHVLTCDAQKKRISLSFLKKQKQEVLENEAYNWNELKVGSMVSGTVKYL 659

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSN-LL 738
               AV V +   G   G +P  HL+DH+ H   +++ +  G    ++LV   NE+   + 
Sbjct: 660  VDGAVRVEL--SGGIAGVLPNPHLSDHVGHCEAIRATLSKGSVLKEMLVWSKNEAQKRIT 717

Query: 739  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            LS K SLI +A+  QL          ++  G +  I   GCFV F   + G A  +  VD
Sbjct: 718  LSCKPSLIEAAKSGQLLQAREDFTSGTLSTGIIRGIETFGCFVEFANSIAGLAYVTNLVD 777

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS-CCSSTDASFMQEHFLLEEKIAM 855
            G   DL   + VGQ+VR+ ++D  S   +++L+LK S C  +T  SF+Q +F  EE IA 
Sbjct: 778  GPLDDLKTRFTVGQTVRARVVD--STGDKLSLTLKPSQCGPNTSISFLQSYFKEEEAIA- 834

Query: 856  LQSSKHNGS----ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 911
              SSK  G+    ++ W   F IGS +E  +    DFG V++F +  +V GF    Q+  
Sbjct: 835  --SSKPEGAAPKPKVNW-SAFEIGSSVEATIKILKDFGAVLTFAD-PNVTGFAVKDQIPE 890

Query: 912  ATVE--SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-- 967
               E   G+ ++A +LD+ K   ++D+SL+   I     A+S    +  KRK + S +  
Sbjct: 891  DNEELTEGAKVKAVVLDIDKQRYIIDVSLQPELISAALPASSQPAKKTAKRKSKGSNEAE 950

Query: 968  -LGVHQTVNAIVEIVKENYLVLSLPEYNHS--IGYASVSDYNTQKF-PQKQFLNGQSVIA 1023
             L V   V + VE++K +YLV+S+P       +GY +  D NTQ   P  +F+  +   A
Sbjct: 951  GLKVGDEVESRVELIKGSYLVVSVPSTKPGVHVGYVATKDCNTQHTDPFSKFIIHEKCKA 1010

Query: 1024 TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF 1083
             V  +PS+  +  LLLL K   E +      A   +    G++V+A+IT + P +L +  
Sbjct: 1011 IVKEIPSTPNSRMLLLLSKIEKEEDKKKKNPAIDVTDLKAGNIVKAKITSVLPTQLNVSL 1070

Query: 1084 GIGFHGRIHITEVNDDKS--NVVENLFSNFKIGQTVTARII-----AK-------SNKPD 1129
            G    GR+HITE+ DD S  N   N    + IG  +  +++     AK          P 
Sbjct: 1071 GSHIRGRVHITEIADDISQLNGHANPLLKYTIGDHIEGKVLDVVLRAKHRLLPISHQNPV 1130

Query: 1130 MKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKA 1189
              +S   +LS++P+ L + E  +        +S+G+++ G V +V  +   ++++  LK 
Sbjct: 1131 TSRSV--DLSLRPADLALGEGQAAPRRTLETLSVGEKLLGVVDRVTPDGVWVSVTCILKG 1188

Query: 1190 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1249
            ++FILD +    ++++   ++ +G AVT +V  ++ +KK L L L P     S  T  + 
Sbjct: 1189 RVFILDMSDSAKDIRDLSEKYAVGTAVTCYVKHVDTQKKALDLTLVPNGVLTSPPTHSLQ 1248

Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
                 T I  G +V GRISKIL GV G+ +Q+ PH YGRV  T++ +         Y E 
Sbjct: 1249 KG---TEIKPGTVVLGRISKILPGV-GVNMQLSPHTYGRVFITDIAD--------DYTE- 1295

Query: 1310 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1369
              +PL+   EG   +C VL      +G   V+LSLR S           L+         
Sbjct: 1296 --NPLADLKEGDVRECYVL----GAKGN-KVDLSLRPSRVNNLQVPKEQLAF------PE 1342

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            +E + DL+   +V+GYV   ++   F+ L+R L A++    L    V+     FP+GKLV
Sbjct: 1343 IESVADLAVGKMVRGYVTETSTSAVFVALNRSLSARITRRELGQSPVKKIGVAFPVGKLV 1402

Query: 1430 AGRVLSVEPLSK---RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
              +V S+    K   ++E+TL T  S+  +        +L  G  V   I+ V+   L +
Sbjct: 1403 EAKVKSIGKRKKNEAKIELTLGTRGSKKLA------FGDLKEGMKVKATIQSVKEKNLLV 1456

Query: 1487 TIENTNLV 1494
             I+ + L+
Sbjct: 1457 QIKRSKLI 1464



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLL 1408
            G    N + +   + T G       DL   M V+  +++V  K   + + R KL     +
Sbjct: 1410 GKRKKNEAKIELTLGTRGSKKLAFGDLKEGMKVKATIQSVKEKNLLVQIKRSKLIGMCRI 1469

Query: 1409 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            S LSD +V+ P K +  G  V   V+ ++P  +R EV+LK S
Sbjct: 1470 SELSDDFVDHPAKYYKEGDAVKALVIKIDPERQRFEVSLKPS 1511


>gi|255082708|ref|XP_002504340.1| predicted protein [Micromonas sp. RCC299]
 gi|226519608|gb|ACO65598.1| predicted protein [Micromonas sp. RCC299]
          Length = 2018

 Score =  577 bits (1487), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 447/1502 (29%), Positives = 740/1502 (49%), Gaps = 187/1502 (12%)

Query: 112  GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL---ARAADALD 168
            GDG      +Y   +  KN+  GMK+ GVV EVN++ L + LP GL+G    A A+D L 
Sbjct: 68   GDG------KYVELLKYKNLRVGMKVLGVVTEVNDRGLTVSLPNGLKGTVTRAEASDVLA 121

Query: 169  PILDNEIEANEDNL-----------------------LPTIFHVGQLVSCIVLQLDDDKK 205
            P      +  + +                        L ++F VGQ++ C V QL   K 
Sbjct: 122  PASKRGKKGPDGDDPSEASESESESEEEDEDEDERLDLTSMFQVGQILRCKVRQLGKGKS 181

Query: 206  EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRN 264
              G ++I LS RLS +   +S  ++ +GM + A V S+EDHGY+L FG   S TGFLPR 
Sbjct: 182  --GGKRIDLSTRLSQVCSNISGHSLTDGMAVPACVNSVEDHGYVLSFGCSDSPTGFLPRK 239

Query: 265  NLAENSGIDVKPGLLLQGVV-----RSIDRTRK-----VVYLSSDPDTVSKCVTKDLKGI 314
            +  ++    +  G +L  V+     +   R R      V+  ++DP  V++ VT +  G 
Sbjct: 240  SCPQSLVDTLVRGSILDVVIAGDEGKDGKRARSKGPGGVMQCTADPKRVAQAVTHEGDGA 299

Query: 315  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF--PTTNWKNDYNQHKK 372
            ++  L+PGM+V+ RV+++L +G+ ++F+TYFT TVD FH+         +    +   ++
Sbjct: 300  AMSTLLPGMLVNARVKAVLADGLQMNFMTYFTATVDAFHVGGGVHGAAPDPAAAHKTGER 359

Query: 373  VNARILFVDPTSRAVGLTLNPYLLHNRA---PPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
            V AR+L+VD  ++ VGLTL P+L+   A     +  K G I++ + V RVD  +G+LL++
Sbjct: 360  VRARVLYVDAAAKRVGLTLRPHLVTLEASVRAGAMPKPGTIFETAVVRRVDTAIGVLLEL 419

Query: 430  PSTPVS---TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
             S   +   T  Y  ISD A+E + KLEK++K G  VR R++G R ++ +AT   K++  
Sbjct: 420  KSENENVHPTFGYCHISDAADEHLDKLEKRFKVGKKVRARVIGSRAMDSVATVSCKSTVL 479

Query: 487  EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
            +    +  ++ PGM V+G+V+AV+ +GA+V+   GVKALCP  H+S+        K K G
Sbjct: 480  DQPFLSLEELVPGMQVRGEVVAVEPYGAVVKLAPGVKALCPPNHISDIPGRVTNAKVKEG 539

Query: 547  AELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
                FRV+ V     R  VTHKK L++S+L +++S  +AT    THG +T +E +G FV+
Sbjct: 540  LSAKFRVVSVDRVKGRAVVTHKKQLIRSELPVVASLDDATPGTTTHGVVTGVEPYGVFVQ 599

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
             Y  ++G A   +LGL     P   + VGQVV+  ++ S    ++I LS        + +
Sbjct: 600  LYGNLRGLAGLQDLGLAADQTPQEAFAVGQVVRATVIRSDRGEQKIKLSLAPGGAVANGN 659

Query: 665  DL------------VKLGSLVSGV----VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
            DL             + G++V       VD  T N   V V   G   G +    ++DH 
Sbjct: 660  DLDGTPGEKGDVGAPEPGTVVESATVKRVDEATGN---VQVTLPGGVPGVVTAAQMSDHP 716

Query: 709  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVH 766
                 +     PG E   L+ L+ +    +LS K SL+ +A+   LP D S +   ++  
Sbjct: 717  LTGAGLSQAFAPGDEIGPLVALEAKPRRSILSRKASLVEAARGGTLPEDISGVVVGAIYP 776

Query: 767  GYVCN-IIETGCFVRFLGRLTGFAPRSKAVDGQRA---DLSKTYYVGQSVRSNILDVNS- 821
            GYV +     G FVRFLGRLTG AP S+  D   A   D  + + +GQ+V + ++ V++ 
Sbjct: 777  GYVASATANAGVFVRFLGRLTGLAPPSQLTDVPVAGGVDPEEMFALGQTVLARVVSVDAT 836

Query: 822  -ETGRITLSL-----KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-- 873
             E  R++LSL       S   + +A  ++  F  +  +A   + +   S  +  EGF+  
Sbjct: 837  VEPPRLSLSLAPRGVAASSGVTAEAPLIRSIF-TDVDVADRLADERAASGGEAPEGFLTA 895

Query: 874  -------IGSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVES--------G 917
                   +G  I+G VH   ++GV+V   +   D  G +  HQL  A  ++        G
Sbjct: 896  AANEKLKVGEEIKGVVHAVREYGVLVDMPDVDPDAVGLVAFHQLPNANGDNEEPKHPAEG 955

Query: 918  SVIQAAILDVAKAERLVDLSLKTVFI-----DRFREANSNRQAQKKKRKREASKDLGVHQ 972
              I   +LDV++ E +VD+  +          +  +A +  + +K+K  +  +  L +  
Sbjct: 956  EKITGRVLDVSRREGVVDIGARPSLTGAKVGKKGAKALTTAELKKRKAAQAGAHKLEIGS 1015

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVS----DYNTQKFPQKQFLNGQSVIATVMAL 1028
             V A VE+VK  Y VLSLP++  +I YASV+     +N  +   ++F  G+ V A V   
Sbjct: 1016 KVTAEVELVKPEYAVLSLPDHGGAIAYASVNLLNRRFNEDEVETERFAVGRKVTAFVAGN 1075

Query: 1029 PSSSTAG-RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
             +S + G RLLL + A    + + S  A   S+   G  ++  + E++ ++  L    G 
Sbjct: 1076 AASGSPGDRLLLTVPAAKSNKGAGSGEA---SAVGAGLAMEGVVKEVQSMQAILTLPNGR 1132

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
             GR+H TE       + E  F   KI    T  ++  +  P   +  + EL+++ S+   
Sbjct: 1133 KGRLHATE-------LAEGAFPMKKIAVGATLNVV--TLGPAGDRGNMLELTVRRSVEES 1183

Query: 1148 SEIGSKLLFEE---------------CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
             EI                         +S G  + G V  V  +   + ++  L A++ 
Sbjct: 1184 REIARAATDAGGGDGSGAGIAGTAALATLSEGDEIDGIVSAVSADTLAIAVAPGLTARVP 1243

Query: 1193 ILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
             +++    + L++    RF +G+ V    L+ +  +K + + LR         + D  N 
Sbjct: 1244 KIETGDSIAALRKALTSRFTVGERVKMTALAADVARKKIIVTLR---------SADKRN- 1293

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                 + EG  + G +SKI  G GG+ VQ+    +GRVH T++ +    DP S       
Sbjct: 1294 -----VVEGAKIAGIVSKIAPGGGGVFVQLNSRQHGRVHVTDIAD----DPRS------- 1337

Query: 1312 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1371
            +P   +  G+ V+ +VL +         V+LS++SS   + S  SS+           + 
Sbjct: 1338 EPWKLHSVGEAVEVRVLGVGE----GGEVDLSMKSS--ALKSKGSSN----------GIS 1381

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
             +  L+P   V G+VK V   GCF+ +SR +DA+V + NL+D +V  P +EFP GKLV G
Sbjct: 1382 SVSQLAPGAHVSGFVKQVNKGGCFVAISRSVDARVKMCNLADTFVSDPAQEFPKGKLVKG 1441

Query: 1432 RVLSVEPLSKRVEVTLKTSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             +LSV+  S R E+TL++      A +S+I+N +++  G + +G ++RV++YG+F+T++ 
Sbjct: 1442 TILSVDESSGRAEMTLRSDGMDAAAGRSQIDNNAHVEEGSVQMGTVRRVQTYGVFVTLDG 1501

Query: 1491 TN 1492
            + 
Sbjct: 1502 SG 1503


>gi|412992671|emb|CCO18651.1| predicted protein [Bathycoccus prasinos]
          Length = 2077

 Score =  561 bits (1445), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 442/1527 (28%), Positives = 748/1527 (48%), Gaps = 224/1527 (14%)

Query: 112  GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL 171
            G G SGK   Y   +  K +  G+KL G+V+ V+ K L++ L  GL+G    ++A D   
Sbjct: 125  GKGSSGK---YIEALKWKTLRRGVKLLGIVSHVSNKGLIVSLQNGLKGTVSKSEASDAFY 181

Query: 172  DNEIEANEDNL---------------------------------------------LPTI 186
                  N+D +                                             L ++
Sbjct: 182  IT----NKDRVKRKSKKKPSSYSSSEEEFSSSSSSSEESSGEEEEEEDGGKKAKIGLESL 237

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
            FHVGQ+V C V+ LD+ K   G ++I L+LRLS +  GL  E + EG  + A V S+EDH
Sbjct: 238  FHVGQIVRCAVVNLDEGK--TGGKRIELTLRLSQVCAGLDKECLTEGAAIPAVVTSVEDH 295

Query: 247  GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV------------------RSID 288
            GYI+ FG+   TGFL R++  +     +  G L++ V+                  R   
Sbjct: 296  GYIVEFGIDGSTGFLSRDSAGDEHD-SLLTGQLIEVVIALTPKAKKDINNNKKKNGRGSK 354

Query: 289  RTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
                 VY +S+D    S  +  + K   I  ++PGM+V  RV+S+LE+G+ +SF+TYF+G
Sbjct: 355  LGESNVYKVSADTKRCSSAIALENKSTLISTILPGMLVKARVKSVLEDGISVSFMTYFSG 414

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV-K 406
            T+D FH+     T+     + + +K+ +R++FVD  ++ VGL+L P+LL  R+P S +  
Sbjct: 415  TIDCFHIAAEDTTS-----FKEGQKLRSRVIFVDAQNKRVGLSLQPHLLEARSPASILPS 469

Query: 407  VGDIYDQSKVVRVDRGLGLLLDIPS--TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
             G I++ + + RVD  +G+ L I       S   Y  +S ++++ V K+EKKYK G  V+
Sbjct: 470  TGSIFENAMINRVDPNVGVSLQISQGGKTRSVAGYAHVSHLSDDHVEKIEKKYKVGKQVK 529

Query: 465  VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
            VR++G R L+ +A   LK S  E   F+  ++ PGM+VKG+V+A + FGAIV+   GVKA
Sbjct: 530  VRVIGHRLLDAVANVSLKRSVLEQPFFSLEELVPGMIVKGEVLATEHFGAIVKLAEGVKA 589

Query: 525  LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAE 582
            LCP  H+S+        K   GA L FRV+ V     R  VTHK+ L+KS+L +L +  +
Sbjct: 590  LCPPIHVSDIVGRTTSSKVTPGAILKFRVISVDRSRHRAIVTHKRALIKSELPVLKTIED 649

Query: 583  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
            A     THG I+ +  +G FV  Y  ++G A   +LGL  G   +  Y VGQV++  I+S
Sbjct: 650  AIPGRTTHGIISGVVDYGVFVTLYGNLKGLAGSQDLGLAEGQSIADAYAVGQVIRTTIVS 709

Query: 643  SIPASRRINLSFMMKPTRVSEDDLVKLGS--------------------------LVSGV 676
            +     ++ LS  +     +EDD    G+                            S  
Sbjct: 710  ADRGENKLRLS--LGGGGGNEDDNAAEGAEATVGAAAAAAAAISLSTDAVPIGKVFASAT 767

Query: 677  VDVVTPNAVVVYVIA---KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF-DQLLVLDN 732
            +  +   + ++ V +   +G  +G +  +HL+D+   A  M S +K G       +V++ 
Sbjct: 768  ITKIVQGSSIIEVTSSTEEGSFQGLVAFQHLSDNPVTALSMASTLKVGEVLPGAFVVIER 827

Query: 733  ESSNLLLSAKYSLIN--SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
            +   +++S K S+I   ++  LP  A  +    +  GYV +   TG FVRFLG LTG AP
Sbjct: 828  KPKRVVMSRKLSIIEAVTSSSLPDRADKVKAGKIYPGYVASTSSTGVFVRFLGSLTGLAP 887

Query: 791  RSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQSCCSS--TDASFMQEH 846
             S+  DG  A  + +++VGQ+V++ +L V+ E    R++LSL+    +   +DA  ++  
Sbjct: 888  PSQIPDGCNA--TDSFFVGQTVQAMVLSVDVECVPPRLSLSLRLQTTAQPLSDAPLIRSF 945

Query: 847  F----LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 902
            F     L+ K+A            K V  F  G  IEG ++E+ D+GV++  +E  +  G
Sbjct: 946  FADLEFLDFKVAQDPKEAETLLSEKTVRMFEPGCDIEGSINETKDYGVLIDIDEDENAVG 1005

Query: 903  FITHHQLAGATVE-----SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
             ++ HQ+   +VE       + +   +LDV++ E ++D+   +V  ++       ++ + 
Sbjct: 1006 LVSPHQVP-ESVEIEEFTPETRLSGRVLDVSRREGVIDIGKVSVVTEKNLSKKKKKKVKS 1064

Query: 958  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQKQFL 1016
                  A K L V +   AIVE++K  Y++LSLP+Y+ +IGYA V   N +     ++F 
Sbjct: 1065 AS---AALKKLKVGEATEAIVELIKAQYVILSLPKYSDAIGYAPVHYCNVRLNDASERFE 1121

Query: 1017 NGQSVIATVMALPSSST----------AGRLLLLLKAISETETSSSKRAKKKSSYDVGSL 1066
              Q V   +  +PS+S+          + RLLL +  +   +++S  +        VG+ 
Sbjct: 1122 VNQRVNVVIAQVPSASSPDDVKGDEFYSNRLLLTVPYVDTNKSNSGPK--------VGTK 1173

Query: 1067 VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1126
             Q  ++E++PL+  +       GRIHITE      +          +G TV   ++  + 
Sbjct: 1174 FQGVVSELQPLQALVSLPNSKKGRIHITETGAFAKSKFP--LEELSLGLTVNVAVLGMAG 1231

Query: 1127 KPDMKKSFLWELSIKPSMLTVSE-----IGSKLLFEECDVS------------IGQRVTG 1169
                 +  L +L+++ S     +       +K   ++ D +            +GQ +  
Sbjct: 1232 ----DRGGLLDLTLRSSADEDKDDENVNKNAKNGNDDFDATASLKRPTLQTLEVGQSIHA 1287

Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKK 1228
            YV  V  +   + I   + A + ++++A    EL++  ++RF  G+ +   ++++N    
Sbjct: 1288 YVISVLPDGVKVCIRPEITAFVPLIETASSIKELKKPLEKRFSKGEKIKATIVNVN---- 1343

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGR 1288
                        +S K VD+S  + Q  +  G  V G IS+   G   ++V++G H+ GR
Sbjct: 1344 ------------VSKKHVDVSFRD-QNSVSVGAKVFGIISRFNKGT-SMMVRLGAHVTGR 1389

Query: 1289 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348
            V  T++            DE Q  P S       V   V     +++ +  V+LS+R SL
Sbjct: 1390 VFLTDVS-----------DEFQEKPFSEMK----VGNVVEVRVVSMKSSGEVDLSMRPSL 1434

Query: 1349 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1408
               S     +++       K+LE  +++S      GYVK+V   GCF+ LSR +DA + L
Sbjct: 1435 LSKSGEKKKNVANPEINDAKNLEVGKEVS------GYVKSVGKSGCFVALSRNVDALIKL 1488

Query: 1409 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNL 1466
            +NL+DG+V  P  EFP G+L+ GR+LS +  + RVE++L+   SDS+T ++  +   ++L
Sbjct: 1489 TNLADGFVVKPSVEFPTGRLIRGRILSADAKTNRVEMSLRASQSDSKTPNKEAV---ASL 1545

Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNL 1493
             VGD+V+G ++ V+SYG+F+T++ + +
Sbjct: 1546 KVGDVVMGTVRSVQSYGVFVTLDESGI 1572



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 200/457 (43%), Gaps = 74/457 (16%)

Query: 917  GSVIQAAILDVAKAER--LVDLSLKTVFIDRFREANSNRQAQK--------KKRKREASK 966
            G  +  A+L +A  +R  L+DL+L++   +   + N N+ A+            KR   +
Sbjct: 1219 GLTVNVAVLGMA-GDRGGLLDLTLRSSADEDKDDENVNKNAKNGNDDFDATASLKRPTLQ 1277

Query: 967  DLGVHQTVNA-IVEIVKENYLVLSLPEYNHSIGY-ASVSDYNTQKFP-QKQFLNGQSVIA 1023
             L V Q+++A ++ ++ +   V   PE    +    + S     K P +K+F  G+ + A
Sbjct: 1278 TLEVGQSIHAYVISVLPDGVKVCIRPEITAFVPLIETASSIKELKKPLEKRFSKGEKIKA 1337

Query: 1024 TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEI-KPLELRLK 1082
            T++ +               +S+     S R   ++S  VG+ V   I+   K   + ++
Sbjct: 1338 TIVNV--------------NVSKKHVDVSFR--DQNSVSVGAKVFGIISRFNKGTSMMVR 1381

Query: 1083 FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
             G    GR+ +T+V+D+     E  FS  K+G  V  R+++      MK S   +LS++P
Sbjct: 1382 LGAHVTGRVFLTDVSDE---FQEKPFSEMKVGNVVEVRVVS------MKSSGEVDLSMRP 1432

Query: 1143 SMLTVS-----EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
            S+L+ S      + +  + +  ++ +G+ V+GYV  V      + +SR++ A + + + A
Sbjct: 1433 SLLSKSGEKKKNVANPEINDAKNLEVGKEVSGYVKSVGKSGCFVALSRNVDALIKLTNLA 1492

Query: 1198 ----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
                 +PS        F  G+ + G +LS + +   + + LR  Q   SD      N   
Sbjct: 1493 DGFVVKPS------VEFPTGRLIRGRILSADAKTNRVEMSLRASQ---SDSKT--PNKEA 1541

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1313
               +  GD+V G +  + S  G  V      + G  H +   ++ V D L+ +       
Sbjct: 1542 VASLKVGDVVMGTVRSVQS-YGVFVTLDESGISGLCHISMFADMHVKDDLANH------- 1593

Query: 1314 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
                  G+ V+ K++++      T  V L +++S+ G
Sbjct: 1594 ---VRAGERVRAKIMKVDYE---TSKVSLGIKASVFG 1624



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 32/204 (15%)

Query: 747  NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
            N A    +DA ++     V GYV ++ ++GCFV     +      +   DG     S  +
Sbjct: 1444 NVANPEINDAKNLEVGKEVSGYVKSVGKSGCFVALSRNVDALIKLTNLADGFVVKPSVEF 1503

Query: 807  YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
              G+ +R  IL  +++T R+ +SL+ S   S   +        +E +A L+         
Sbjct: 1504 PTGRLIRGRILSADAKTNRVEMSLRASQSDSKTPN--------KEAVASLK--------- 1546

Query: 867  KWVEGFIIGSVIEGKVHESNDFGVVVSFEE-------HSDVYGFITHHQLAGATVESGSV 919
                   +G V+ G V     +GV V+ +E       H  ++  +         V +G  
Sbjct: 1547 -------VGDVVMGTVRSVQSYGVFVTLDESGISGLCHISMFADMHVKDDLANHVRAGER 1599

Query: 920  IQAAILDVAKAERLVDLSLK-TVF 942
            ++A I+ V      V L +K +VF
Sbjct: 1600 VRAKIMKVDYETSKVSLGIKASVF 1623


>gi|302845196|ref|XP_002954137.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
 gi|300260636|gb|EFJ44854.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
          Length = 2192

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 459/1660 (27%), Positives = 779/1660 (46%), Gaps = 236/1660 (14%)

Query: 3    ASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSL 62
            A  +  +K+ S  G   ++    Q K   +++ +       A+  +D    FPRGG  +L
Sbjct: 2    AGQQSQKKRRSAGGAVPHEQEAPQAKRPNQRLEEPTR-NPFAVKEED----FPRGGADTL 56

Query: 63   TQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRY 122
            T  ER E+      E E  E    K+ K KK +  ++ +E  D         + GKL ++
Sbjct: 57   TALERRELTEAARREVEQ-ELADGKQPKSKKARLSKQEDEE-DTFFRKHAAAVEGKLAKH 114

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA---RAADALDPILDNE----- 174
             + + +K++ AG ++WG+V EV  + LV+ L  GLRG     +A+D L  +L  +     
Sbjct: 115  VDLLRVKDLHAGTRVWGMVLEVTPRGLVVSLAHGLRGYVAPNQASDVLALMLKAQKTAAA 174

Query: 175  -----------------IEANEDNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRK---I 212
                             +EA    + P   +F VGQ V  +V++    +   G R    +
Sbjct: 175  AAAGDRGDVARKKGAALLEAAGGVVPPLTDLFVVGQFVRGVVMEAPTGEDTGGGRSAKHV 234

Query: 213  WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--S 270
             LSL L  +  GL  E V EG+ L A V+S+EDHGY L FG+   +GFL + +       
Sbjct: 235  ALSLLLRDVQGGLGSEAVAEGLALGAVVRSVEDHGYTLSFGIKGTSGFLRKKDHEAQFGE 294

Query: 271  GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRV 329
            G+ ++ G L+  VVR+    R V+ +S  P  V+  VT++ +G+S +  ++PG +++ +V
Sbjct: 295  GVALQVGGLIDVVVRNAADKRNVL-VSCAPGDVAAAVTREAEGMSGLGAVLPGALLNVKV 353

Query: 330  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTT------------NWKNDYNQHKKVNARI 377
            + +L NG+++SFLT+F GTVD++HL                   +W+  Y +  K+ AR+
Sbjct: 354  RKVLSNGLLVSFLTFFHGTVDLYHLPAASAAAAAAATGGAAGSKDWRKLYPEGTKLRARL 413

Query: 378  LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR--GLGLLL---DIPST 432
            L+ D   +  GL+L P+L     P     +G ++ +++VVR+D   G GLLL    +P  
Sbjct: 414  LYADLVRKRAGLSLLPHLAAQTLPSPVPVLGSVFPEAEVVRLDAAGGPGLLLRMEGLPEG 473

Query: 433  PVSTPAYVTISD------VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
            PV+   Y  +S+      VA+E V  + +KYK G+ +  R++G+R L+G+A+  ++ S  
Sbjct: 474  PVA--GYCHVSNALEEKKVAKEAVAAMAEKYKVGTKLPARVIGYRLLDGMASVTVRPSQV 531

Query: 487  EGLVFTHSDVKPGMVVKGKVIAV---DSFGA-IVQFPGGVKALCPLPHMSEF---EIVKP 539
               V + +D+ PGM+V G VI+V   D  G  +VQ   GVK L P  H SE         
Sbjct: 532  NAAVLSFTDLTPGMLVAGTVISVPDRDGDGPLLVQIAEGVKGLVPPLHASELTGAAAAAA 591

Query: 540  GK--------KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
            GK        K KVG  +  RVL +   ++++T+T +K  + +K A L S A+A      
Sbjct: 592  GKTSGGKRRIKVKVGDRVEARVLDLDLGARKVTLTLRKAFLATKAAPLVSAAQAVPGSRF 651

Query: 590  HGWITKI-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            HG +T + ++ G FV F++G+ G A   +LGL+PG +    + +GQVV+  I+S+  A  
Sbjct: 652  HGMVTGLHDRLGVFVSFFSGLSGLASHDDLGLEPGQDVKEAFGIGQVVRATILST--AGG 709

Query: 649  RI-------------------------NLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVT 681
            RI                         +L   ++P  ++E  ++K+  G          T
Sbjct: 710  RIKLSLASKSAAAEAAAAAASNGISTPDLLGGLQPGDIAEAVVLKVHNGGEGGDAASSAT 769

Query: 682  PNAVVVYVIAKGYSKGTIP--------TEHLADHLEHATVMKSVIKPGYEFDQLLVLDN- 732
            P              G++P          HL+DH       ++V++PG +  +++VL+  
Sbjct: 770  PFYTCRLERPGVSGGGSVPLGVRARLEVPHLSDHPAALEAFRAVVRPGTKLGRVVVLERL 829

Query: 733  ESSNLL-LSAKYSLI--NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
            E++  + +S K SL+   +A +LP     +   +V+ GYV ++     +VRFLG LTG A
Sbjct: 830  EAARCVRVSRKPSLLAAGAAGRLPRRFEEVVEGAVLPGYVASVTPDAVYVRFLGGLTGRA 889

Query: 790  PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLL 849
               +  D   ++    +  GQSVR+ +   ++   R TL L+ S  +STD +F+ ++F  
Sbjct: 890  GLPQLSDVFVSEPRLLFAEGQSVRAQVAVCDAARQRFTLMLRPSVTASTDGAFLLDYFKE 949

Query: 850  EEKIAMLQSSKHNG-------------------------SELKWVEGFIIGSVIEGKVHE 884
             +++  L++                              ++L     F +G +   +VHE
Sbjct: 950  MQQLQALRAEAEAEPGGGGGGGDGAAGNGAANGGSAAPPADLDPARVFPLGGLAAARVHE 1009

Query: 885  SNDFGVVVSFEEHSDVYGFI--THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 942
              ++G+V   +EH DV G +  +H    G +   G+ ++  +LDV   + LV+LSLK   
Sbjct: 1010 VKEYGIVCDMDEHPDVVGLVPSSHAGALGPSPAVGTRVRGRVLDVVGHQGLVELSLKPGM 1069

Query: 943  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN-YLVLSLPEYNHSIGYAS 1001
            +    +  + R A ++ +        GV   V A+VE ++   YL+LSLP+++ ++ YA+
Sbjct: 1070 VAAAEDGAAGRAAARQLKP-------GV--AVEAVVEGIRPGEYLILSLPQHSAALAYAA 1120

Query: 1002 VSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLL----LLLKAISETETSSSKRA 1055
            V+DYNT +     + F  GQ + ATV A P  +  GR++    L           ++   
Sbjct: 1121 VTDYNTPRPDLVPRTFTVGQRLTATVAATPPDAPLGRIVCHVPLTRIGGGAGGKGAAASG 1180

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
             KK + D GS+V+A +T I+P +L +                            +   G+
Sbjct: 1181 GKKVTLDPGSVVEAVVTGIQPYQLDV----------------------------SVCGGK 1212

Query: 1116 TVTARIIAK-SNKPDMKKSFLWELSIKPSMLTVSEIGSKLL--FEECDVSIGQRVTGYVY 1172
            TV A ++ +       +   +W+LS++PS L  ++ G   +       ++ GQ++  +V 
Sbjct: 1213 TVEAVVLGRLQTGEGHRPGSVWDLSLRPSRLAKAKKGEPPVPSVTLSSLAPGQQLPCFVL 1272

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            +V  +   L     ++ ++  LD++ +P  L +    F  G  V   VL++++++  L L
Sbjct: 1273 EVAEDALWLGAGPAVRGRVAALDASLDPDVLTDLSSTFPPGTVVLARVLAVSRKRNSLDL 1332

Query: 1233 VLRPFQDGISDKTVDISNDNMQT---FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
             L     G +  +V        T      EG +V GRI  + +  GG+ V IG    G V
Sbjct: 1333 SLIDPCSGTTRGSVAGGGAAATTAAPLPPEGALVMGRI--LAANGGGVRVSIGHRRAGSV 1390

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
              T++           YDE   D  +G  EG +V+ +VL       G F V LSLR S  
Sbjct: 1391 ALTDI-----------YDEWVPDARAGLREGAYVRVRVLGRD----GDFAV-LSLRPSRG 1434

Query: 1350 GMSSTNSSDLST------------DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
            G  + +   ++                     L   + L     V GYVK   +KG F+ 
Sbjct: 1435 GAVAGSKPSVTAAGSKKQGGSSSSATAAAAPELISADSLKVGATVTGYVKRCDAKGLFLA 1494

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
            L R  D  + L NLSDG++E P   FP G  +  RVL V     R+E+TL+++  +T+  
Sbjct: 1495 LDRFRDGHIKLVNLSDGFIEDPAAAFPAGMQLEARVLRVGE-GGRIELTLRSATRQTSGS 1553

Query: 1458 S--EINNLSNLHVGDIVIGQIKRVESYGLFITI-ENTNLV 1494
            +   + +LS L  G +V G+++RVE +G+F+ +  N  LV
Sbjct: 1554 AAPAVQSLSELRPGQLVSGRVRRVERFGVFVEVGGNPGLV 1593



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 658  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
            P  +S D L K+G+ V+G V     +A  +++    +  G I   +L+D         + 
Sbjct: 1465 PELISADSL-KVGATVTGYVKRC--DAKGLFLALDRFRDGHIKLVNLSDGFIEDPA--AA 1519

Query: 718  IKPGYEFDQLLVLDNESSNL---LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
               G + +  ++   E   +   L SA      SA       S + P  +V G V  +  
Sbjct: 1520 FPAGMQLEARVLRVGEGGRIELTLRSATRQTSGSAAPAVQSLSELRPGQLVSGRVRRVER 1579

Query: 775  TGCFVRFLGR--LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             G FV   G   L G A  S+  DG   D++  +   Q VR+ +  V+ E  R++LS+K 
Sbjct: 1580 FGVFVEVGGNPGLVGLAHISELADGPVKDINSVFKSKQLVRAVVTKVDVEASRLSLSMKP 1639

Query: 833  SC 834
            S 
Sbjct: 1640 ST 1641


>gi|428178388|gb|EKX47263.1| hypothetical protein GUITHDRAFT_137461 [Guillardia theta CCMP2712]
          Length = 1592

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 407/1432 (28%), Positives = 695/1432 (48%), Gaps = 116/1432 (8%)

Query: 116  SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILD 172
            S K+P++   +  K ++ GM L G V EV + D  I LP  L G   +   +D L  +L+
Sbjct: 116  SMKMPKFIEPLRFKKLNTGMLLCGFVKEVRQADATISLPNNLTGWVEIDEISDELSAVLE 175

Query: 173  NEIEANEDNLLP--TIFHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSL 227
              +E  E +  P      +G  V C++L    L    K+  K  I +SL+ S +   L+L
Sbjct: 176  QVLEDEEADAPPLEDYIWIGMPVRCVILSTAVLSTAGKQQHK-NISVSLKPSRVNSALAL 234

Query: 228  ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI 287
            +T+ +G+ L   V S ++ GY +  G    T FLP     E S  ++K G LL+  V+ +
Sbjct: 235  DTLHKGLSLYGAVSSKQEKGYTISLGTSEATAFLP---FQEVSRGELKVGQLLETYVKKV 291

Query: 288  DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
             +  K+  +S+  +++   +TK+++ +++D L+PGM+   +V  + E+G+++ FL +F G
Sbjct: 292  KKEHKLAIVSTQRESLEDSLTKEIESLTLDNLLPGMIFKCKVAKVHESGLVVRFLNFFFG 351

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---SH 404
            T+D+FHL     +      +++ + V ARI+ +D  +  +GL+L  ++L +  PP   + 
Sbjct: 352  TIDLFHL-PLVGSGKGVEQFSEKQVVTARIISLDVGANRIGLSLRRHVLDSLPPPYVQAD 410

Query: 405  VKVGDIYDQSKVVRVDRGLGLLLDIP---STPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
            VK+G  +D + V RVD  +G+LL++        S   YV IS+V++E V K+EK+   G 
Sbjct: 411  VKMGQRFDGAIVRRVDPEVGVLLEVQLGGEGSESLEGYVHISNVSDERVEKVEKEVAVGK 470

Query: 462  CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
             V  R++GF   +GL    +K S     V  + D+ PG +VK KV  +   G +V     
Sbjct: 471  EVSCRVIGFSWADGLINMSMKPSVLAAEVLLYDDLTPGDLVKVKVERLSEEGCLVSISDN 530

Query: 522  VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS 579
            V+   P  H ++  +V P ++   G  +  RVL V  +++++ +T KKTLV S L +++ 
Sbjct: 531  VRGYIPSSHFADVALVNPERRLLPGKMIKARVLRVNPQTRQLLLTLKKTLVSSSLPLIAR 590

Query: 580  YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKC 638
              +A   +++HG + K+++ G  V F+   +GF PRSELG++   E     +   QV+K 
Sbjct: 591  VEDAKVGMLSHGVVYKVQESGVLVSFFGTAKGFLPRSELGIEQEAERVEDCFKPDQVLKV 650

Query: 639  RIMSSIPASRRINLSFMMKPTR---VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
            R++S     +RI LS          ++    + +G LV   ++VV      + V A   +
Sbjct: 651  RVLSVEVDRKRIVLSLKAAKENSQIIATSARLTVGELVE--MEVVEKQEEALLVRAANGA 708

Query: 696  KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQ-- 751
             G +P  HLADH   A +    ++P       LVLD     S  L++ K SL+++ ++  
Sbjct: 709  VGFLPRPHLADHSNLAALAFQQLQPEARLT-CLVLDLLANKSRYLVTVKPSLLSAVREEN 767

Query: 752  LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811
             PS  + +HP   + GYV ++   G FVRFLGRLT  AP S    G   D    +  GQS
Sbjct: 768  FPSSLAQLHPQQFLQGYVFSVKSCGVFVRFLGRLTALAPSSSLAAGHVDDPQSLFEEGQS 827

Query: 812  VRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
            VR  ++           +LK S C STD+SF++    +E    ++  ++  G E K    
Sbjct: 828  VRCCVV-----------TLKPSICLSTDSSFLKS---MEATEQLVLEAQMKGGESKRA-- 871

Query: 872  FIIGSVIEGKVHESNDFGVV---VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
               G V+E +V E+   GV    + FE    + G    H    A V +G   +  +L   
Sbjct: 872  ---GQVVEEQVVEALCVGVKGKELHFELPGSLVGVCPPHLHGRAKVTTGKRYKVCVL--- 925

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 988
                L+D   + V++    E  ++ QA KK + +E  ++L    +V  IV++V E  +VL
Sbjct: 926  ----LIDKLRERVYVGMEDELVASLQASKKGKGKEKEQELMPADSVRGIVQLVGEERVVL 981

Query: 989  SLPEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET 1047
            SLP+ +  +  AS+ D+N + +  +KQF+ GQS+   V+        G  +L+++A S +
Sbjct: 982  SLPQ-SRKLAVASIEDFNVRGERARKQFVPGQSMDVLVL-----EATGAPVLVMRADSGS 1035

Query: 1048 ETSSSKRAKKKSSYDV--------------------GSLVQAEITEIKPLELRLKFGIGF 1087
              +  +  +K    ++                    G LV+  +  +K     ++ G G 
Sbjct: 1036 GKTQRREGQKVDDEELMRNGENCKGARLTSMEEAERGKLVKGIVHSVKATHANVRLGGGL 1095

Query: 1088 HGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAK-SNKPDMKKSFLWELSIKPSM 1144
             G I + +  D  +     EN  S  + GQ + AR++   S     + + L  LSI+PS 
Sbjct: 1096 RGVIDLLDAMDPEEMREGKENRLSMLQQGQAIDARVLGVFSPARAGRDTRLVALSIRPSE 1155

Query: 1145 LTVSE---IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
            L   E   +  +   +E              + D  W  L  S  LK ++  LD++ E +
Sbjct: 1156 LAQPEETPLTKRPSLDELKEGEEVEGMVEKVEGDCLWVHLGSS--LKGRVEQLDASRELT 1213

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
             L+  ++ F +G+ V   V++++  K  + L L    +   +K         +  I  G+
Sbjct: 1214 VLENLKKNFKVGQGVRASVIAVDVGKSRVDLRLLEEGEKGKEKGSGRKRKKGEEAIQVGE 1273

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1321
            +V  +I K   G G  V+++G H +GRVH  ++ +  V  PLS +  GQ           
Sbjct: 1274 VVPAKIVKARPGFG-FVLKLGLHSFGRVHICDIADAAVDAPLSLFKVGQL---------- 1322

Query: 1322 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1381
             V+C VLE            LSLR S          + +         +  +++L+   +
Sbjct: 1323 -VRCCVLEAEED-----GFALSLRPSRVSGKRRGEEEEAVREHGAFPEVSSVKELAVGQL 1376

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            + GYVK+ +S G F+ L R++ A+V +S LSDGYV+  +  FP G+ V+GRV+SVE   +
Sbjct: 1377 LSGYVKSASSAGVFVQLGRQVTARVKISELSDGYVKDVKANFPPGRRVSGRVISVEVKKE 1436

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            +V+++LK S             S+L VG +V G +K V+S+G+F+ I  + L
Sbjct: 1437 QVDLSLKRS---VVLGKRRVGWSDLQVGQVVAGAVKSVQSFGVFVRIRGSEL 1485



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 186/450 (41%), Gaps = 59/450 (13%)

Query: 1017 NGQSVIATVMALPSSSTAGR---LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
             GQ++ A V+ + S + AGR   L+ L    SE          K+ S D     +     
Sbjct: 1123 QGQAIDARVLGVFSPARAGRDTRLVALSIRPSELAQPEETPLTKRPSLDELKEGEEVEGM 1182

Query: 1074 IKPLE---LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            ++ +E   L +  G    GR+   + + + + V+ENL  NFK+GQ V A +IA     D+
Sbjct: 1183 VEKVEGDCLWVHLGSSLKGRVEQLDASRELT-VLENLKKNFKVGQGVRASVIA----VDV 1237

Query: 1131 KKSFL-WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA-LLTISRHLK 1188
             KS +   L  +         G K    E  + +G+ V   + K    +  +L +  H  
Sbjct: 1238 GKSRVDLRLLEEGEKGKEKGSGRKRKKGEEAIQVGEVVPAKIVKARPGFGFVLKLGLHSF 1297

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
             ++ I D A   + +      F +G+ V   VL    E+    L LRP +  +S K    
Sbjct: 1298 GRVHICDIA--DAAVDAPLSLFKVGQLVRCCVL--EAEEDGFALSLRPSR--VSGKRRGE 1351

Query: 1249 SNDNMQ---TFIHEGDIVGGRISKILSGV------GGLVVQIGPHLYGRVHFTELKNICV 1299
              + ++    F     +    + ++LSG        G+ VQ+G  +  RV  +EL +  V
Sbjct: 1352 EEEAVREHGAFPEVSSVKELAVGQLLSGYVKSASSAGVFVQLGRQVTARVKISELSDGYV 1411

Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1359
             D      +  F P      G+ V  +V  IS  V+    V+LSL+ S+           
Sbjct: 1412 KDV-----KANFPP------GRRVSGRV--ISVEVKKE-QVDLSLKRSV----------- 1446

Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVES 1418
                   GK      DL    +V G VK+V S G F+ +   +LD    +S + + +V  
Sbjct: 1447 -----VLGKRRVGWSDLQVGQVVAGAVKSVQSFGVFVRIRGSELDGLCHISEVGEEFVRD 1501

Query: 1419 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
              K+F  G  V  ++L ++P  K + + +K
Sbjct: 1502 LSKQFKQGDKVKAKILRMDPQRKTISLGMK 1531


>gi|432113019|gb|ELK35597.1| Protein RRP5 like protein [Myotis davidii]
          Length = 1877

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 415/1484 (27%), Positives = 689/1484 (46%), Gaps = 177/1484 (11%)

Query: 54   FPRGGGHSLTQRE--------RDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            FPRGG     + E        +D +  ++  E E+++R   +K   K KK + +  E+  
Sbjct: 8    FPRGGTRKTHKSEIAPQQSVEQDNLF-DISTEEESIKRKKSQKGPAKTKKLKIEKRESSK 66

Query: 106  DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA-- 163
             +   F              ++++++  GM++ G V EVNE +LVI LP GL+G  +   
Sbjct: 67   SIEEKF------------EILSIESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTE 114

Query: 164  -ADALDPILDNEIEANED----NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
             +DA    L+ ++E  E       LP +F  G LV C+V  L   +K  GK+ + LSL  
Sbjct: 115  ISDAYTKKLNEQVEQEEPLKDLASLPELFSPGMLVRCVVSSLGITEK--GKKSVKLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + K LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  QNVNKVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGARAFLPLQKAQEYIRQKNKGAK 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  V++ +     VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLHCVIKEVKGNGGVVSLSIGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L+FL++FTG VD  HL+     T + N     + V A +L V P +RAV L+L P
Sbjct: 293  PLGLTLNFLSFFTGLVDFMHLEPKKAGTYFSN-----QAVRACVLSVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +    +G + D + V       G    +    +   AY  +S +++ + 
Sbjct: 348  VFLQPGRPLTQLSCQHLGAVLDDAPVQGFFSKAGATFRLKDGSL---AYARLSHLSDSKK 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKG V+ + 
Sbjct: 405  TFNPEAFKPGNTHKCRIINYSQMDELALLSLRTSIIEAQFLGYHDIKPGALVKGTVLTIK 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
             +G +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKT
Sbjct: 465  PYGMLVKVSEQIRGLVPPMHLADIPMKNPEKKYHIGDEVTCRVLLCDPEAKKLMMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y      L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  
Sbjct: 525  LVESKLPAITCYDNTKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPEK 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDD----LVKLGSLVSGVVDVV 680
            +++ GQVVK  +++  P+  R+ LSF +    K   V +       V +G LV   V   
Sbjct: 585  VFYTGQVVKVAVLNCEPSKERMLLSFRLLSDPKKEHVGQSQKKRKAVNVGQLVDVKVLEK 644

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     ++LL 
Sbjct: 645  TKDGLEVTVLPHNIP-AFLPTSHLSDHVANGPLLHHWLQAGDTLHRVLCLSQSEGHVLLC 703

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP++   D  
Sbjct: 704  RKPALVSTVEGGQDPKTFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKF 763

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 764  VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823

Query: 856  LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
                 +  S L + +     G V++ +V E  + G VV F E   V G +   + +  AG
Sbjct: 824  RSLMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVV-FSE-GPVPGLVLRASKYHRAG 881

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              VESG   +A IL+V   +  V +SL    +        NR+A+K K+ RE       H
Sbjct: 882  QEVESGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGRE-------H 926

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
            Q   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 927  Q---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEP 983

Query: 1031 SSTAGRLLLLLKAISETETSSSKRA-------------------KKKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                    KKK +  +G +V   +
Sbjct: 984  GVTG--LLLAVEGPAAKRTMRQTRKDSETVDEDDEGDPCMVVGFKKKHTLSIGDMVTGTV 1041

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK 1127
              IKP  + +    G  G IH + + DD         +  K+G+ VTAR+I     K++K
Sbjct: 1042 KSIKPTHVVVTLENGIIGCIHASHILDDVPEGTSPT-ARLKVGKKVTARVIGGRDVKTSK 1100

Query: 1128 --PDMKKSFLW---ELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV--YKV 1174
              P     F+    ELS++PS+L       ++      L +      GQ VT ++  Y V
Sbjct: 1101 FLPISHPRFIRTIPELSVRPSVLEKDGHAALNTHSVSPLEKIKQYQAGQTVTCFLKKYNV 1160

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
              +W  + I+  ++ ++ +L  +     L+   ++F IG+A+   V+  +  K  L L L
Sbjct: 1161 IKKWLEVEIAPDIRGRIPMLLISLSFKVLKHPDKKFQIGQALKATVVGPDSSKAFLCLSL 1220

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                         I    ++    +G++  GR+ K+     GL V       GRV     
Sbjct: 1221 -------------IGPHKLE----KGEVAMGRVVKVTPN-KGLTVSFPFGRTGRVSI--- 1259

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
                VSD    Y E    PL  +   + V+C VL  +  V     + LSLRSS       
Sbjct: 1260 --FHVSD---SYSEA---PLEDFIPEKIVRCYVLSTADEV-----LTLSLRSS------- 1299

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
              ++  T    P   +  I+D+    +++GYVK+V   G  + L   +   V L+     
Sbjct: 1300 -RTNPETKSKVPDPEINSIQDVQEGQLLRGYVKSVQPHGVLLGLGPSV---VGLAQYPRV 1355

Query: 1415 YVESP------EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP      E+  P GKL+  +VLSV      VE++   SD+
Sbjct: 1356 SRHSPLEKALYERYLPEGKLLTAKVLSVNHQKNLVELSFLPSDT 1399


>gi|158186708|ref|NP_001101074.2| programmed cell death protein 11 [Rattus norvegicus]
          Length = 1876

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 414/1492 (27%), Positives = 690/1492 (46%), Gaps = 187/1492 (12%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNK--------KKKKKTERKANET 103
            FPRGG     + E+  +   E D  F+ + E G  K+ K        KK K  +RK+N++
Sbjct: 8    FPRGGTRKPHKSEKSSQPVVEQDNLFDISTEEGSVKRKKSQKGPAKTKKLKIEKRKSNKS 67

Query: 104  VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
            + +   +               ++L+++  GM++ G V EVNE +LV+ LP GL+G  + 
Sbjct: 68   MKEKFEI---------------LSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQV 112

Query: 164  ADALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSL 216
             +  D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+
Sbjct: 113  TEICDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSV 170

Query: 217  RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSG 271
                + K LS E ++ GM+LT  V S+EDHGY++  G+     FL      E     N G
Sbjct: 171  NPKRVNKVLSAEALRPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKG 230

Query: 272  IDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 331
               K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ 
Sbjct: 231  AKFKVGQYLTCVVEELKSNGGVVSLSVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQK 290

Query: 332  ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
            + + G+ L+FLT+FTG VD  HL+           Y+  + V A IL V P +R V L+L
Sbjct: 291  VTQFGLQLNFLTFFTGLVDFMHLE-----PKKMGSYSSKQTVKACILCVHPRTRVVRLSL 345

Query: 392  NPYLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
             P  LH   P + +   ++G + D + V       G +  +    +   AY  +S +++ 
Sbjct: 346  RPIFLHPGRPLTRISYQQLGTVLDDASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDS 402

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
            +     + +K GS  R RI+ +  ++ LA   L+ S        + D+K G +VKGKV+A
Sbjct: 403  KKAFSAEAFKLGSTHRCRIIDYSQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLA 462

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHK 566
            +  FG +V+    ++ L P  H+++  +  P KKF  G E+  RVL    ++K++ +T K
Sbjct: 463  LKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
            KTLV SKL  ++ Y +A   L THG I +++ +GC V+FYN VQG  P+ EL      +P
Sbjct: 523  KTLVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDP 582

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----------LGSLVSGV 676
              +++ GQVVK  +++  P+  R+ LSF +      +D+ VK           G LV   
Sbjct: 583  ERVFYTGQVVKVAVLNCEPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVK 642

Query: 677  VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN 736
            V   T N + V ++        +PT HL+DH+ +  ++   ++ G    ++L L     +
Sbjct: 643  VLEKTKNGLEVAILPHNIP-AFLPTPHLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKH 701

Query: 737  LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
            +LL  K +L+++ +  Q P   S I P  ++ G+V +I + G FV+F   L+G +P++  
Sbjct: 702  ILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIM 761

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEE 851
             D      S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE
Sbjct: 762  SDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEE 821

Query: 852  KIAMLQ-SSKHNGSELKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQL 909
               +    S  +   ++ +     G V++  V E  + G VV       D+    + +  
Sbjct: 822  LQGIRSLMSNQDSVLIQTLADMTPGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHR 881

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
            AG  +E G   +  +L V   +  V +SL    ++R           K ++ R+ S+   
Sbjct: 882  AGQELEPGQKKKVVVLHVDALKLEVHVSLHQDLVNR-----------KARKLRKNSR--- 927

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
             HQ    IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+   
Sbjct: 928  -HQ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTT 983

Query: 1029 PSSSTAGRLL---------LLLKAISETETSSSK--------------RAKKKSSYDVGS 1065
                T G +L         + + A  ++ET   K              R+KK  S  +G 
Sbjct: 984  EPGVT-GLILAVEGPASKRIRMPAQRDSETVDDKGEEEEEEEEEDLTVRSKKSHSLAIGD 1042

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA-- 1123
             V   I  +K     +    GF G IH++ + DD    V    +  K G+ VTAR+I   
Sbjct: 1043 KVTGTIKSVKATHAVVTLDDGFIGCIHVSRILDDVPEGVSPT-TTLKAGKKVTARVIGGR 1101

Query: 1124 --KSNK--PDMKKSF---LWELSIKPSML----------TVSEIGSKLLFEECDVSIGQR 1166
              K++K  P     F   + ELS++PS L          +VS +     ++      GQ 
Sbjct: 1102 DVKTSKFLPISHPRFVLTILELSVRPSELKGDYRALNTHSVSPMEKIRQYQ-----AGQT 1156

Query: 1167 VTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
            VT ++  Y V  +W  + I   ++ ++ +L ++     L+   ++F IG+A+   V+  +
Sbjct: 1157 VTCFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVVGPD 1216

Query: 1225 KEKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
              +  L L ++ P++                  + EGD+  GR+ K+L    GL V    
Sbjct: 1217 IPRAFLCLSLIGPYK------------------LEEGDVAMGRVLKVLPN-KGLTVSFPF 1257

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
               G+V    L +         Y E   +PL+ +   + V+C +L  +  +     + LS
Sbjct: 1258 GRIGKVSVFHLSD--------SYSE---EPLTDFCPQKIVRCYILSTAHRM-----LALS 1301

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
            LR      SS  + +  + ++ P   +  IED+    +++GYVK++      I L   + 
Sbjct: 1302 LR------SSRTNKETKSKIEDP--EVNSIEDIQAGQLLRGYVKSILPSSVVIGLGPSVM 1353

Query: 1404 AKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
              V  S++S       E   K  P GKLV  RVL V P    +E++L  SD+
Sbjct: 1354 GLVKHSHVSQCVSREKELYDKCLPEGKLVTARVLCVNPKKNLIELSLLPSDT 1405



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 34/241 (14%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  G IV G++  +     G++V++G  + G V    L +I + +P   ++ G       
Sbjct: 450  IKTGTIVKGKVLALKPF--GMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG------- 500

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
             DE   VKC+VL      +      ++L+ +L              V +    +   ED 
Sbjct: 501  -DE---VKCRVLLCDPEAKKLI---MTLKKTL--------------VTSKLPAITCYEDA 539

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
             P +   G +  V   GC +     +   V    LS  ++  PE+ F  G++V   VL+ 
Sbjct: 540  KPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNC 599

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNL----SNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            EP  +R+ ++ K           + N     S ++ G +V  ++      GL + I   N
Sbjct: 600  EPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHN 659

Query: 1493 L 1493
            +
Sbjct: 660  I 660


>gi|417406792|gb|JAA50038.1| Putative rrna processing protein rrp5 [Desmodus rotundus]
          Length = 1876

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 422/1493 (28%), Positives = 686/1493 (45%), Gaps = 195/1493 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKN----KKKKKKTERKANETVDDLGS 109
            FPRGG     + E+            A ER + + N      ++K T+RK ++T      
Sbjct: 8    FPRGGTRKTHKSEK------------AFERSVEQDNLFDISAEEKSTKRKKSQT------ 49

Query: 110  LFGDGISGKLP---RYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
              G   S KL    R ++K        ++++++  GM++ G V E NE +LVI LP GL+
Sbjct: 50   --GPAKSKKLKIEKRESSKSVKEKFEILSIESLCEGMRMLGCVKEANELELVISLPNGLQ 107

Query: 159  GLARAADALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRK 211
            G  +  +  D      NE  A E+ L     LP +F  G LV C+V  L   +K  G++ 
Sbjct: 108  GFVQVTEICDAYTKKLNEQVAQEEPLKDLASLPELFSPGMLVRCVVSSLGITEK--GRKS 165

Query: 212  IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--- 268
            + LSL    + K LS E ++ GM+LT  V S EDHGY++  G+     FLP     +   
Sbjct: 166  VKLSLNPKNVNKVLSAEALKPGMLLTGTVSSREDHGYLMDIGVVGARAFLPLQKAQDYVR 225

Query: 269  --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVS 326
              N G ++K G  L  V+  +     VV LS     VS  +  + +  +++ L+PG++V 
Sbjct: 226  QKNKGAELKMGQYLTCVIEEVKGNGGVVRLSVSHSEVSTAIATEEQNWTLNNLLPGLVVK 285

Query: 327  TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 386
             +VQ +   G+ L+FL++FTG VD  HL      T     Y+ ++ V A +L V P +RA
Sbjct: 286  AQVQKVTPLGLTLNFLSFFTGLVDFMHLDPKKAGT-----YSSNQAVRACVLCVHPRTRA 340

Query: 387  VGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
            V L+L P  L    P + +    +G + D   V       G    +    +   AY  +S
Sbjct: 341  VRLSLRPVFLQPGRPLTRLSCQHLGAVLDDIPVQGFFSKAGATFRLKDGSL---AYARLS 397

Query: 444  DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
             +++ +     + +K G+  + RI+ +  ++ LA   L+ S  E    +  D+KPG +VK
Sbjct: 398  HLSDSKSAFSPEAFKPGNTHKCRIINYSQMDELALLSLRTSVIEAQYLSFHDIKPGALVK 457

Query: 504  GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRI 561
            G V+ +  +G +V+    ++ L P  H+++  +  P KK+ VG E+  RVL    ++K++
Sbjct: 458  GTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNPEKKYHVGDEVTCRVLLCDPEAKKL 517

Query: 562  TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
             +T KKTLV+SKL  ++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +
Sbjct: 518  MMTLKKTLVESKLPAITCYAKAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAE 577

Query: 622  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR------VSEDDLVKLGSLV 673
               +P  +++ GQVVK  +++  P+  R+ LSF +   P +        +   + +G LV
Sbjct: 578  YVPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLLSDPKKEHAGRSQKKGKTINVGQLV 637

Query: 674  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
               V   T + + V V+        +P  HL+DH+ +  ++   ++ G    ++L L   
Sbjct: 638  DVKVLEKTKDGLEVAVLPHNIP-AFLPMSHLSDHVPNGPLLYHWLQAGDTLHRVLCLSQS 696

Query: 734  SSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
              ++LLS K +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP+
Sbjct: 697  EGHVLLSRKPALVSTVEGGQDPKSFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPK 756

Query: 792  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFL 848
            +   D      S  +  GQ+V + + +V+ E  R+ LSL+ S CS  D    S +     
Sbjct: 757  AIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCSLGDRATTSLLLLSQC 816

Query: 849  LEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI--- 904
            LEE+  +     +  S L + +   I G V++ +V E    G VV F E   V G +   
Sbjct: 817  LEERQGVRSLMSNRDSVLIQTLAEMIPGMVLDLEVQEVLGDGSVV-FSE-GPVPGLVLRA 874

Query: 905  THHQLAGATVESGSVIQAAIL--DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 962
            + +  AG  V +G   +A IL  DV K E  V L    V          NR+A+K K+  
Sbjct: 875  SRYHRAGQEVGAGQKKKAVILHVDVVKLEVHVSLCRDLV----------NRKAKKLKKGS 924

Query: 963  EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSV 1021
            E       HQ   A+V+ ++E++ V SL E  H   ++  +  N T +F  ++   GQ V
Sbjct: 925  E-------HQ---AVVQYLEESFAVASLVETGHLAAFSLAAHLNDTFRFDSEKLQVGQGV 974

Query: 1022 IATVMALPSSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYD 1062
              T+       T    LL ++  +   T    R                    KKK +  
Sbjct: 975  SLTLKTTEPGVTG--FLLAVEGPAAKRTMRQTRKDSETVDEDDEGDPAMVVGTKKKHALS 1032

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +G +V   +  IKP  + +    G  G IH + + D+   +  +  +  K+G+TVTAR+I
Sbjct: 1033 IGDMVTGTVKSIKPTHVVVTLQNGIIGCIHASHILDE-VPLGTSPTAKLKVGKTVTARVI 1091

Query: 1123 AKSNKPDMKK-SFL-----------WELSIKPSML-----TVSEIGSKLLFEEC-DVSIG 1164
                  DMK   FL            ELS++PS L     T     S    E+      G
Sbjct: 1092 GGR---DMKTFKFLPISHPRFIRTIPELSVRPSELAKDGRTALNTHSVSPSEKIKQYQAG 1148

Query: 1165 QRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            Q VT ++  Y V  +W  + I+  ++ ++ +L ++     L+   + F IG+A+   V+ 
Sbjct: 1149 QTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKNFRIGQALKATVVG 1208

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
             +  K  L L L             I    ++    EG++  GR+ K+     GL V   
Sbjct: 1209 PDSSKAFLCLSL-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP 1250

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
               +GR+    L    VSD    Y E    PL  +   + V+C VL  +  V     + L
Sbjct: 1251 ---FGRIGSVSL--FHVSD---SYSE---TPLEDFTPQKIVRCYVLSSTDEV-----LTL 1294

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK- 1401
            SLRS     S TN    S  +D     +  I D+    +++GYVK+V   G    L    
Sbjct: 1295 SLRS-----SRTNPETKSKIIDP---EINSIRDIQEGQLLRGYVKSVQPHGVLFGLGPSV 1346

Query: 1402 --LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
              L     +S+ S        +  P GKL+  +VLSV      VE++    D+
Sbjct: 1347 VGLARHPRVSHCSPSKKALYNRHLPGGKLLTAKVLSVNHQKNLVELSFLPGDT 1399



 Score = 47.0 bits (110), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 45/251 (17%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1186 FKVLKHPDKNFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEEG 1229

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P E L + F  G  G + +  V+D  S   E    +F   + V   +++
Sbjct: 1230 EVAMGRVVKVTPNEGLTVSFPFGRIGSVSLFHVSDSYS---ETPLEDFTPQKIVRCYVLS 1286

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             +++       +  LS++ S  T  E  SK++  E     D+  GQ + GYV  V     
Sbjct: 1287 STDE-------VLTLSLRSSR-TNPETKSKIIDPEINSIRDIQEGQLLRGYVKSVQPHGV 1338

Query: 1180 L-------LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            L       + ++RH +       S   PS+   + R    GK +T  VLS+N +K L+ L
Sbjct: 1339 LFGLGPSVVGLARHPRV------SHCSPSKKALYNRHLPGGKLLTAKVLSVNHQKNLVEL 1392

Query: 1233 VLRPFQDGISD 1243
               P   G  D
Sbjct: 1393 SFLPGDTGKPD 1403


>gi|426253041|ref|XP_004020210.1| PREDICTED: protein RRP5 homolog [Ovis aries]
          Length = 1873

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 416/1480 (28%), Positives = 689/1480 (46%), Gaps = 178/1480 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   KK +K   KT++   ET + 
Sbjct: 8    FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKTQKGPAKTKKVKVETRE- 63

Query: 107  LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                     S K  R   +I  ++++  GM++ G V EVNE +LVI LP GL+G  +  +
Sbjct: 64   ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTE 114

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     LP +F  G LV C+V  LD  K   GK+ + LSL  
Sbjct: 115  ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTK--WGKKNVMLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS ET++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAR 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +  +  VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLNCLIEEVKGSGGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L FL++F+G VD  HL      T + N     ++V A +L V P +RAV L+L P
Sbjct: 293  PLGLTLKFLSFFSGLVDFMHLDPKRAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +   ++G + D   V       G    +    +   AY   + ++  + 
Sbjct: 348  IFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGNAGATFKLKDGAL---AYARRNHLSNSKK 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKGKV+ + 
Sbjct: 405  TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
              G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    K+K++ +T KKT
Sbjct: 465  PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y +A   L THG+I +++++GC V+FYN VQG  PR EL  +   +P S
Sbjct: 525  LVESKLPAITCYDDAKPGLQTHGFILRVKEYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDDLVKLGSLVSG--VVDV----V 680
            +++ GQVVK  +++  P+  R+ LSF +   P +  E    K    VS   +VDV     
Sbjct: 585  VFYTGQVVKVAVLNCEPSKERMLLSFRLLSDPKQECEGQSQKKKKAVSAGQLVDVKILEK 644

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+      G +PT HL+DH+ +  ++   ++ G    ++L L      +LL 
Sbjct: 645  TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSASEERVLLC 703

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V NI + G F++F   L+G AP++   D  
Sbjct: 704  RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFIQFPSGLSGLAPKAILSDKF 763

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 764  VTSTSDHFVEGQTVVAKVTNVDKEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823

Query: 856  LQ-SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
                S  +   ++ +     G  ++ +V E  + G V+ F E   V G +   + +  AG
Sbjct: 824  RSLMSNQDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +E G   +A IL+V   +  V +SL    +        NR+A+K K+  +        
Sbjct: 882  QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
              + AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 926  --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 984  GVTG--LLLAVEGPAAKRTMRQARKDSETVDEDEEVDPALVIGTVKKHTLSIGDMVTGTV 1041

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097

Query: 1132 K-SFL-----------WELSIKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV-- 1171
               FL            ELS++PS L     T     S    E+      GQ VT ++  
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTALNTHSVSPLEKIKQYQAGQTVTCFLKK 1157

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS-INKEKKLL 1230
            Y +  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+   +  K  L
Sbjct: 1158 YNMVKKWLEVEIAPDVRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPADSSKAFL 1217

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L L             I    ++    +G++  GR+ K+ +   GL V      +GRV 
Sbjct: 1218 SLSL-------------IGPHKLK----KGEVAMGRVVKV-TPKEGLTVSFP---FGRVG 1256

Query: 1291 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
               +    VSD    Y E +   L  +   Q V+C VL  +  V     + LSLRS    
Sbjct: 1257 RVSM--FHVSD---SYSETR---LEDFAPQQIVRCYVLSAASPV-----LTLSLRS---- 1299

Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
             S TN    S   D     +  I+DL    +++G+VK+V   G  + L   +       +
Sbjct: 1300 -SRTNPETKSKITDP---EINSIKDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLAQHPH 1355

Query: 1411 LS--DGYVESP-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            +S  +    +P ++  P GKL+  +VL +      VE++L
Sbjct: 1356 VSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 159/395 (40%), Gaps = 55/395 (13%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V     
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKEYGC 557

Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            ++     ++  +    L + Y P      +  F+ G+ V   VL+    K+ + L  R  
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVAVLNCEPSKERMLLSFRLL 613

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKN 1296
             D    +  +  +   +  +  G +V  +I  +     GL V + PH + G +    L +
Sbjct: 614  SD--PKQECEGQSQKKKKAVSAGQLVDVKI--LEKTKDGLKVAVLPHNIPGFLPTAHLSD 669

Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
               + PL       +  L   D                  T H  L L +S + +     
Sbjct: 670  HVTNGPLL------YHWLQTGD------------------TLHRVLCLSASEERVLLCRK 705

Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
              L + V+  G++ +   ++ P M++ G+VKN+   G FI     L      + LSD +V
Sbjct: 706  PALVSAVEG-GQNPKSFSEIHPGMLLIGFVKNIKDYGVFIQFPSGLSGLAPKAILSDKFV 764

Query: 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
             S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 765  TSTSDHFVEGQTVVAKVTNVDKEKQRMLLSLRLSD 799



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 152/392 (38%), Gaps = 68/392 (17%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G +V+A++ ++ PL L LKF   F G +    ++  ++      FSN    Q V A ++ 
Sbjct: 281  GLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKRAG---TYFSN----QQVRACVLC 333

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-----DVSIGQRV--TGYVYKVDN 1176
                    ++    LS++P  L      ++LL ++      DV +       G  +K+ +
Sbjct: 334  VH-----PRTRAVRLSLRPIFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGNAGATFKLKD 388

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
                     HL          ++P         F  G      ++  ++  +L  L LR 
Sbjct: 389  GALAYARRNHLSNS----KKTFKPEA-------FKPGNTHKCRIIDYSQMDELALLSLR- 436

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
                I +      +D     I  G +V G++  I     G+VV++G  + G V    L +
Sbjct: 437  --TSIIEAQFLWYHD-----IKPGALVKGKVLTIKPH--GMVVKMGKQIRGLVPTMHLAD 487

Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
            I + +P   Y  G        DE   VKC+VL      +      ++L+ +L        
Sbjct: 488  ILIKNPEKKYHVG--------DE---VKCRVLLCDPKAKKLM---MTLKKTL-------- 525

Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
                  V++    +   +D  P +   G++  V   GC +     +   V    LS  YV
Sbjct: 526  ------VESKLPAITCYDDAKPGLQTHGFILRVKEYGCIVKFYNDVQGLVPRHELSAEYV 579

Query: 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
              PE  F  G++V   VL+ EP  +R+ ++ +
Sbjct: 580  PDPESVFYTGQVVKVAVLNCEPSKERMLLSFR 611



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 5/118 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1435 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              +P +K++ +TLK +  +S+  +   I    +   G    G I RV+ YG  +   N
Sbjct: 509  LCDPKAKKLMMTLKKTLVESKLPA---ITCYDDAKPGLQTHGFILRVKEYGCIVKFYN 563


>gi|84040294|gb|AAI11041.1| PDCD11 protein [Homo sapiens]
          Length = 1444

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 403/1484 (27%), Positives = 684/1484 (46%), Gaps = 176/1484 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+    G         L     F ++
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKI 1255

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
              + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS 
Sbjct: 1256 GTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSR 1301

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +      S++S  
Sbjct: 1302 TNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ- 1358

Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1359 --HSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|29436556|gb|AAH49838.1| PDCD11 protein, partial [Homo sapiens]
          Length = 1436

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 403/1484 (27%), Positives = 684/1484 (46%), Gaps = 176/1484 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+    G         L     F ++
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKI 1255

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
              + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS 
Sbjct: 1256 GTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSR 1301

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +      S++S  
Sbjct: 1302 TNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ- 1358

Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1359 --HSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|70980549|ref|NP_055791.1| protein RRP5 homolog [Homo sapiens]
 gi|145559523|sp|Q14690.3|RRP5_HUMAN RecName: Full=Protein RRP5 homolog; AltName: Full=NF-kappa-B-binding
            protein; Short=NFBP; AltName: Full=Programmed cell death
            protein 11
 gi|119570026|gb|EAW49641.1| programmed cell death 11, isoform CRA_c [Homo sapiens]
 gi|225000512|gb|AAI72442.1| Programmed cell death 11 [synthetic construct]
          Length = 1871

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 405/1484 (27%), Positives = 685/1484 (46%), Gaps = 176/1484 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V           F ++
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FGKI 1255

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
              + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS 
Sbjct: 1256 GTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSR 1301

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S  
Sbjct: 1302 TNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHV 1356

Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1357 SQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|119570024|gb|EAW49639.1| programmed cell death 11, isoform CRA_a [Homo sapiens]
          Length = 1872

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 405/1484 (27%), Positives = 685/1484 (46%), Gaps = 176/1484 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V           F ++
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FGKI 1255

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
              + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS 
Sbjct: 1256 GTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSR 1301

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S  
Sbjct: 1302 TNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHV 1356

Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1357 SQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|395828464|ref|XP_003787398.1| PREDICTED: protein RRP5 homolog [Otolemur garnettii]
          Length = 1870

 Score =  421 bits (1083), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 409/1488 (27%), Positives = 689/1488 (46%), Gaps = 184/1488 (12%)

Query: 54   FPRGGGHSLTQRER--------DEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            FPRGG     + E+        D +  ++  E ++ +R   +K   K K  + K  E++ 
Sbjct: 17   FPRGGTRKTHKSEKALQKSVEQDNLF-DISTEEKSTKRKKGQKEPAKTKTLKIKKRESIK 75

Query: 106  DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
             +   F            + ++++++  GM++ G V EVNE +LVI LP GLRG  +  +
Sbjct: 76   SVREKF------------DILSVESLCEGMRILGCVKEVNELELVISLPNGLRGFVQVTE 123

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D      NE    E+ L     LP +F  G LV C+V  +D  ++  GK+ + LSL  
Sbjct: 124  ICDAYTKKLNEQVTQEEPLKDLLHLPELFSPGMLVRCVVSSVDTTER--GKKSVKLSLNP 181

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS E+++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 182  KNVNRVLSAESLKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLPKAQEYIRQKNKGAK 241

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  V+  +  +  VV L+     VS  +T + +  +++ L+PG++V  +VQ + 
Sbjct: 242  LKVGQYLNCVIEEVKASGGVVSLAIGHAEVSTAITTEEQNWTLNNLLPGLVVKAQVQKVT 301

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
             +G+ L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P
Sbjct: 302  PHGLTLNFLTFFTGLVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRP 356

Query: 394  YLLHNRAPP---SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
             LL    P    S   +G + D   V       G    +      T AY  +S +++ E 
Sbjct: 357  ILLQPGRPLIRLSCQHLGAVLDDVSVQGFFNKAGATFRLKD---GTLAYARLSHLSDSEN 413

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                  +K G+  + RI+ +  ++ LA   L+ +  E     + D+KP  VVKG V+ + 
Sbjct: 414  SFNPDAFKPGNTHKCRIIDYSQMDELALLSLRTAIIEAQYLRYHDIKPAAVVKGTVLTIK 473

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
             +G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    ++K++ +T KKT
Sbjct: 474  PYGMLVKVGEQIRGLVPAMHLADIPIKNPEKKYHVGDEVKCRVLLCDPEAKKLMMTLKKT 533

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y++    L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  
Sbjct: 534  LVESKLRAIACYSDVKPGLQTHGFIIRVKDYGCIVKFYNDVQGLVPKHELSAEYIPDPER 593

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSEDD--LVKLGSLVSGVVD 678
            +++ GQVVK  +++  P+  R+ LSF +        +PT  S     ++ +G LV   + 
Sbjct: 594  VFYTGQVVKAVVLNCEPSKERMLLSFKLLSDPELQKEPTGHSRKKGRVINIGQLVDVRIS 653

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
              T + + V V+        +PT HL+DH+ ++ ++   ++PG    ++L L     ++L
Sbjct: 654  EKTKDGLEVTVLPSNIP-AFLPTPHLSDHVANSPLLYHWLQPGDTLHRVLCLSRSEGHVL 712

Query: 739  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L  K +L+++ +  Q P + S IHP  ++ G+V +I + G FV+F   L+G AP++   D
Sbjct: 713  LCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSD 772

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   DA+      LL + +  L
Sbjct: 773  KFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCMLGDAA-TTSLLLLNQCLEEL 831

Query: 857  QSSK-----HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQ 908
            Q  +      +   ++ +     G ++E  V E  + G VV       V G +   + + 
Sbjct: 832  QGVRSLMRNRDSILIQTLAEMTPGMILELVVQEVLEDGSVVF--SGGPVPGLVLRASKYH 889

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
             AG  VESG   +  +L+V   +  V +SL    +        N++A+K K+  E     
Sbjct: 890  RAGQEVESGQKKKVVVLNVDMLKLEVYVSLHQDLV--------NKKAKKLKKGSE----- 936

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMA 1027
              HQ   AIV+ ++E++ V SL +  H   ++  S  N T +F  ++   GQ V  T+  
Sbjct: 937  --HQ---AIVQHLEESFAVASLVDTGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKT 991

Query: 1028 LPSSSTAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAE 1070
                 T   L +   A   T   + K ++                 KK +  +G +V   
Sbjct: 992  TEPGVTGLLLAVEGPAAKRTMRRTQKDSETVDEDEEVDPALAIATIKKHALSIGDMVTGT 1051

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF--SNFKIGQTVTARIIAKSNKP 1128
            +  IKP  + +    G  G IH + + DD   V E     +  ++G+TVTAR+I   +  
Sbjct: 1052 VKSIKPTHVVVTLEDGIIGCIHASHILDD---VPEGTCPTAKLQVGKTVTARVIGGRDVK 1108

Query: 1129 DMKKSFL-----------WELSIKPSMLTVSEIGSKLLFEEC--------DVSIGQRVTG 1169
              K  FL            ELS++PS L   E G   L                GQ VT 
Sbjct: 1109 TFK--FLPVSHPRFVRTIPELSVRPSEL---EDGHTALNSHSVSPMEKIKQYQAGQTVTC 1163

Query: 1170 YV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
            ++  Y V  +W  + I+  ++ ++ +L ++     L+   ++F IG+A++  V+  +  K
Sbjct: 1164 FLKKYNVVKKWLEVEIAPDVRGRIPLLLTSLSFKVLKHPDKKFRIGQALSATVVGPDSSK 1223

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              + L L             I    ++    +G++  GR++K+     GL+V       G
Sbjct: 1224 AFVCLSL-------------IGPHKLE----KGEVAMGRVAKVTPN-EGLMVSFPFGKMG 1265

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
            RV         VSD    Y E    PL  +   + V+C VL     V     + LSLRS 
Sbjct: 1266 RVSV-----FHVSD---SYSEM---PLEDFIPQKVVRCYVLSTEDEV-----LTLSLRS- 1308

Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
                S TN  +  + V+ P   +  I D+    +++GYVK++  +G    L   +     
Sbjct: 1309 ----SKTN-PETKSRVEDP--EINSIHDVKKGQLLRGYVKSIEPQGVLFGLGPSVVGLAQ 1361

Query: 1408 LSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
             S +S   +       K  P G+L+  ++LSV      VE++   SD+
Sbjct: 1362 YSKVSQYSLFKKALYNKYLPEGRLLTAKILSVNHQKNLVELSFLPSDT 1409


>gi|74194348|dbj|BAE24688.1| unnamed protein product [Mus musculus]
          Length = 1438

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 408/1493 (27%), Positives = 686/1493 (45%), Gaps = 183/1493 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF +      +D            V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
             T   L+L ++  +          ++ET   K                    ++KK+ S 
Sbjct: 987  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
             +G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103

Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRV 1167
            I     K++K  P     F   + ELS++PS L  S       S+   E+      GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
              G+V    L +         Y E    PL  +   + V+C +L  +  V     + LSL
Sbjct: 1265 KIGKVSMFHLSD--------SYSEA---PLEDFCPQKIVRCYILSTAHRV-----LALSL 1308

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            RSS     + N       ++ P   +  IED+    +++GYVK V      I L   +  
Sbjct: 1309 RSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLG 1360

Query: 1405 KVLLSNLSDGYVESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                S++S+     PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1361 LAKYSHVSECV--PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411


>gi|40352805|gb|AAH64486.1| PDCD11 protein [Homo sapiens]
 gi|51593565|gb|AAH80560.1| PDCD11 protein, partial [Homo sapiens]
          Length = 1434

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 402/1484 (27%), Positives = 683/1484 (46%), Gaps = 176/1484 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+    G         L     F ++
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKI 1255

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
              + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS 
Sbjct: 1256 GTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSR 1301

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +      S++S  
Sbjct: 1302 TNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ- 1358

Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1359 --HSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|301097567|ref|XP_002897878.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
 gi|262106626|gb|EEY64678.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
          Length = 1882

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 418/1484 (28%), Positives = 680/1484 (45%), Gaps = 207/1484 (13%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNE-KDLVICLPGGLRGLARAADALDPILDNEIEANEDN 181
            A  +T K +  GM L G V ++ + +DL+I LP  L G      AL+   D+        
Sbjct: 74   ATLLTFKALRKGMLLLGCVRQITDGQDLMISLPNKLNGTV----ALNECSDD-------- 121

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRK-IWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
               T+F VGQ V C+VL       + GKRK I LSLR SLL+  LS  ++ +G  L A V
Sbjct: 122  ---TLFKVGQFVPCVVLATG----KTGKRKQIHLSLRTSLLHAELSPGSLTKGTSLHATV 174

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
             S+EDHG I++ G+     F+PR  L   +    K   LL  VV S++       ++ D 
Sbjct: 175  SSVEDHGAIVNLGIRGVHAFVPRKELTTPAH---KGQHLLVNVV-SMNMHTNTATVTIDR 230

Query: 301  DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
              V K VT+     ++  LVPGM+++ RV+ +LENG+ ++FL++F+ TV+  H+  + P 
Sbjct: 231  SQVVKAVTRG-DSFTLKQLVPGMLLNVRVEDVLENGLSVTFLSFFSATVEQNHM--SLPC 287

Query: 361  TN-WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRV 419
               W+  Y +  K  ARI+ +D  ++ + L++ P+++H + P S    GDI +++ + R+
Sbjct: 288  ERGWEESYRKGMKARARIVSIDYIAKQITLSMAPHVVHLQVPESLFSAGDIIEEATIERI 347

Query: 420  DRGLGLLLDIPST---------------------PVSTPAYVTISDVAEEEVRKLEKKYK 458
            D G+G+LL + S                          P YV IS+V+++ V KLEKK+ 
Sbjct: 348  DVGIGMLLSLKSQDEDVDMEDASDKKENTTNAKWKAFAPGYVHISNVSDKRVDKLEKKFT 407

Query: 459  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
             GS ++ R+LGF   + +A+      +    V  H D+KPG  V GK+++V+S+G +++ 
Sbjct: 408  VGSSIKCRVLGFSPFDAVASVSCTEHSISQTVLRHKDLKPGTKVNGKILSVESWGILMEI 467

Query: 519  PGGVKALCPLPHMSEFEIVKPGK--KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 574
              GV+ L    HM  F + K     K+K G     RVL V   + +  +T K  L+ S L
Sbjct: 468  SEGVRGLVTSQHMPAFLLNKKANSGKYKAGKTTSARVLHVDLDANKTYLTMKSGLLSSDL 527

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVG 633
             +LSS+ EAT  LI HG+ITKI ++G  V FYN V G  P + L    G E     Y  G
Sbjct: 528  PVLSSFKEATMGLIAHGFITKIGEYGVIVTFYNNVYGLVPMAVLQ-QAGIENLEEAYVPG 586

Query: 634  QVVKCRIMSSIPASRRINLSFMM-------KPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 686
            QVVK R+       +R+ LSF         KPT   E     +G+ ++  V +   +   
Sbjct: 587  QVVKARVTRCDANRKRLMLSFDTTSNSSGNKPTAAPEIASKLVGTKITN-VKITDVDTTC 645

Query: 687  VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD----QLLVLDNESSN-LLLSA 741
              V  K   +G +P   L D   + +++  ++K     D     LLV+  ES   L+LS 
Sbjct: 646  FRVQTKDGMEGVLPFVQLTDFPRNTSLVDKIVKRFSAGDVISEPLLVVSQESDGVLMLSK 705

Query: 742  KYSLINSAQQ---LPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPR---SKA 794
            K  L+  A +   LP     +  N+V+ GYV ++ +  G FV+FL  L   AP+    + 
Sbjct: 706  KPLLLEFASRKAILPRTFRDVQENAVLIGYVTSVNVSKGVFVKFLNNLVAVAPKGFLKEQ 765

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS-------CCSSTDASFMQEHF 847
              GQ  +  + + +G++V  ++  ++ E  +  +  +QS         +    +F Q + 
Sbjct: 766  FVGQIDE--EMFEIGETVTCSVAKMDKEKKQFVVGFQQSNFVLPTNSTNKARPAFFQAY- 822

Query: 848  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITH 906
             L E     Q+S  N +E+K    F +G   + +      +G V + E +   V   +  
Sbjct: 823  -LRE-----QASVRNAAEVK-KSPFALGKSEKTEFVGVRPYGAVFALETDEETVTVLVPS 875

Query: 907  HQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 966
                    + G  ++  + D        D S K V+     E+     ++K +++++  K
Sbjct: 876  VTEKNNEWDEGDTVKLLLTD-------YDFS-KNVYYGAADESLVKSGSKKSRKQKQRVK 927

Query: 967  DLGVHQTVNAIVEIVKENYLVLSLPEYNHS----IGYASVSDY--NTQKFPQKQFLNGQS 1020
              G       +     E Y V+S P+  ++     G   + D+   +Q   Q     G S
Sbjct: 928  TGGKIAAATVLAVSPTEKYAVVSFPDPQNADLLQFGVVQLCDFWCPSQTSSQLGIEVGAS 987

Query: 1021 VIATVM---------ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD-----VGSL 1066
            +   V+         + P    A   L   + +++T+ SS K + K   Y      +G++
Sbjct: 988  IECRVVQPSLKSVSNSTPFDDLALLALEEEELVAKTKASSRKTSSKVPKYTQEDLVLGNI 1047

Query: 1067 VQAEITEI--KPLELRL---KFGIGFHGRIHITEVN--DDKSNVVENLFSNFKIGQTVTA 1119
            +   I+ I    +E+R+   K        + I +VN  D+KS    + F  + +  TVT 
Sbjct: 1048 LTGVISGISENSMEIRVETHKKAGKVRATVSIVDVNGIDEKSG-HSHPFDRYSVNTTVTG 1106

Query: 1120 RIIAKSNKPDMK----------KSFLWELS------------------IKPSMLTVSEIG 1151
            R+IA S K   K          K    +LS                  ++P  L  S  G
Sbjct: 1107 RVIAVSAKGANKLKPVSEENPAKFHALQLSLRSEDVAGDEKVEDVQRFVRPDWLEGSA-G 1165

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
              LL E      G  V G V   D +   + +S ++   L  ++ + +   ++EFQ ++ 
Sbjct: 1166 RALLKE------GNSVEGVVSDQDADHLTVKLSGNVTGTLSCVEVSEDVDVVREFQGKYP 1219

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +GK V   VL ++ EKK + L +           +  S+   Q  +  G IV G IS   
Sbjct: 1220 VGKRVKCFVLQVDDEKKTVDLSV-----------IHASSAQSQAVVKSGTIVNGVISTKK 1268

Query: 1272 SGV--GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
            S +    ++VQIG H +GRV  TEL+    +D L          L  +  G+ V+C VL 
Sbjct: 1269 SAIRPPSIMVQIGVHTFGRVCITELQTKWENDMLE---------LPKFSVGKVVRCVVLS 1319

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
             S       H++LSLR   D + S  +           K   K  + +   +V   V   
Sbjct: 1320 TSNN-----HIDLSLRE--DALDSPKAY---------AKKSSKSAERNVGDLVPAIVATT 1363

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            TS GCF+ + R   A+V+L +LSD +V+ P+ +FP GKLVAGRV   +   + +E++LK 
Sbjct: 1364 TSSGCFVRVDRHTTARVMLRDLSDDFVKDPQTQFPSGKLVAGRV--TKKSDRGLELSLKA 1421

Query: 1450 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
              S  +    +   S+L  G  V G I +V++YG+F+ IE T +
Sbjct: 1422 --SVVSDDVSVFKWSDLKEGLTVKGTITKVQTYGVFVRIEKTTI 1463



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 126/287 (43%), Gaps = 39/287 (13%)

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
            +S+  +A  KS   V  ++  + + I+P  + ++ G+   GR+ ITE+     N +  L 
Sbjct: 1246 SSAQSQAVVKSGTIVNGVISTKKSAIRPPSIMVQIGVHTFGRVCITELQTKWENDMLEL- 1304

Query: 1109 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1168
              F +G+ V   +++ SN          +LS++   L   +  +K   +  + ++G  V 
Sbjct: 1305 PKFSVGKVVRCVVLSTSNNH-------IDLSLREDALDSPKAYAKKSSKSAERNVGDLVP 1357

Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
              V    +    + + RH  A++ + D       +++ Q +F  GK V G V    K  +
Sbjct: 1358 AIVATTTSSGCFVRVDRHTTARVMLRD--LSDDFVKDPQTQFPSGKLVAGRV--TKKSDR 1413

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTF----IHEGDIVGGRISKILSGVGGLVVQI-GP 1283
             L L L+            + +D++  F    + EG  V G I+K+ +   G+ V+I   
Sbjct: 1414 GLELSLK----------ASVVSDDVSVFKWSDLKEGLTVKGTITKVQT--YGVFVRIEKT 1461

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
             + G  H +E+ +  V+ PL             + EG +VK KVL++
Sbjct: 1462 TISGLCHISEVADEKVTQPLDQI----------FSEGDYVKAKVLKV 1498



 Score = 48.5 bits (114), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 31/256 (12%)

Query: 324  MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA----RILF 379
            ++ST+  +I    +M+    +  G V I  LQ     T W+ND  +  K +     R + 
Sbjct: 1263 VISTKKSAIRPPSIMVQIGVHTFGRVCITELQ-----TKWENDMLELPKFSVGKVVRCVV 1317

Query: 380  VDPTSRAVGLTLNPYLLHNRAPPSHVK---------VGDIYDQSKVVRVDRGLGLLLDIP 430
            +  ++  + L+L    L   +P ++ K         VGD+           G  + +D  
Sbjct: 1318 LSTSNNHIDLSLREDALD--SPKAYAKKSSKSAERNVGDLVPAIVATTTSSGCFVRVDRH 1375

Query: 431  STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG-- 488
            +T     A V + D++++ V+  + ++  G  V  R+   +   GL    LKAS      
Sbjct: 1376 TT-----ARVMLRDLSDDFVKDPQTQFPSGKLVAGRVTK-KSDRGLELS-LKASVVSDDV 1428

Query: 489  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKP-GKKFKVG 546
             VF  SD+K G+ VKG +  V ++G  V+     +  LC +  +++ ++ +P  + F  G
Sbjct: 1429 SVFKWSDLKEGLTVKGTITKVQTYGVFVRIEKTTISGLCHISEVADEKVTQPLDQIFSEG 1488

Query: 547  AELVFRVLGVKSKRIT 562
              +  +VL V+ +R++
Sbjct: 1489 DYVKAKVLKVEDRRVS 1504


>gi|168272922|dbj|BAG10300.1| RRP5 protein homolog [synthetic construct]
          Length = 1871

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 404/1484 (27%), Positives = 684/1484 (46%), Gaps = 176/1484 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V           F ++
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FGKI 1255

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
              + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS 
Sbjct: 1256 GTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSR 1301

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S  
Sbjct: 1302 TNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHV 1356

Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1357 SQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|1136430|dbj|BAA11502.1| KIAA0185 [Homo sapiens]
          Length = 1884

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 404/1484 (27%), Positives = 684/1484 (46%), Gaps = 176/1484 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 21   FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 76

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 77   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 130

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 131  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 188

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 189  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 248

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 249  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 308

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 309  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 363

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 364  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 420

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 421  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 480

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 481  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 540

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 541  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 600

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 601  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 660

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 661  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 719

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 720  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 779

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 780  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 838

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 839  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 898

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 899  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 942

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 943  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 1000

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 1001 TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1060

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1061 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1115

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1116 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1175

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1176 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLT 1235

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V           F ++
Sbjct: 1236 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FGKI 1268

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
              + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS 
Sbjct: 1269 GTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSR 1314

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S  
Sbjct: 1315 TNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHV 1369

Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1370 SQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1413


>gi|338716596|ref|XP_001499541.3| PREDICTED: protein RRP5 homolog [Equus caballus]
          Length = 1870

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 410/1482 (27%), Positives = 685/1482 (46%), Gaps = 174/1482 (11%)

Query: 54   FPRGGGH-------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG         +  Q    +   ++  E E+ +R  ++K   K KK + +  E+   
Sbjct: 8    FPRGGTRKPHKSDKAFQQSVEQDNLFDISTEQESTKRKKNQKGPAKTKKLKVEKRESSKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F            + ++++++  GM++ G V EVNE +LVI LP GL+G  +  + 
Sbjct: 68   IREKF------------DILSIESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEI 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      +E  A E+ L     LP +F  G LV C+V  L   +K  GK+ + LSL   
Sbjct: 116  CDAYTKKLSEQVAQEEPLKDLARLPELFSPGMLVRCVVSSLSVTEK--GKKNVKLSLNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP----RNNLAENSGIDVK 275
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP    +  + +N G  +K
Sbjct: 174  NVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVAGARAFLPLQKAQEYIRQNKGAKLK 233

Query: 276  PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
             G  L  ++  +  +  VV LS     VS  +  +    +++ L+PG++V  +VQ +   
Sbjct: 234  VGQYLNCIIEEVKGSGGVVSLSIGHSEVSTAIATEEHNWTLNNLLPGLVVKAQVQKVTPL 293

Query: 336  GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
            G+ L+FL++FTG VD  HL    P    K  Y  ++ V A +L V P +RAV L+L P  
Sbjct: 294  GLTLNFLSFFTGLVDFMHLD---PKKAGK--YFSNQAVRACVLCVHPRTRAVRLSLRPVF 348

Query: 396  LHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
            L    P + +    +G + D   V       G    +    +   AY  +S +++ +   
Sbjct: 349  LQPGRPLTRLSCQHLGAVLDNVPVQGFFSKAGATFRLKDGAL---AYARLSHLSDPKNVF 405

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
              + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKG V+ +  +
Sbjct: 406  NPETFKPGNTHKCRIIDYSQMDELALLSLRTSVIEAQYLRYHDIKPGALVKGTVLTIKPY 465

Query: 513  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLV 570
            G +V+    ++ L P  H+++  +  P KK++ G E+  RVL    +++++ +T KKTLV
Sbjct: 466  GMLVKVGEQIRGLVPPMHLADILMKNPEKKYRTGDEVKCRVLLCDPEARKLMMTLKKTLV 525

Query: 571  KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
            +SKL  ++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  ++
Sbjct: 526  ESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVF 585

Query: 631  HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--------DDLVKLGSLVSGVVDVVTP 682
            + GQVVK  +++  P+  R+ LSF +      E           V +G L+   V   T 
Sbjct: 586  YAGQVVKVVVLNCEPSKERMLLSFKLLSDSKKECAGHNQKKRRAVNVGQLMDVKVLEKTK 645

Query: 683  NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742
            + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  K
Sbjct: 646  DGLEVAVLPHNIP-AFLPTPHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSERHVLLCRK 704

Query: 743  YSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
             +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP++   D    
Sbjct: 705  PALVSTVEGGQDPKSFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVT 764

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQ 857
              S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +  
Sbjct: 765  STSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRS 824

Query: 858  SSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGAT 913
               +  S L + +     G V++ +V E  + G V+ F E   V G +     +  AG  
Sbjct: 825  LMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRANRYHRAGQE 882

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +A IL+V   +  V +SL    +        NR+A+K K+  E       HQ 
Sbjct: 883  VESGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSE-------HQ- 926

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 927  --AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLHVGQGVSLTLKTTEPGV 984

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITE 1073
            T   LLL ++  +   T    R                     KK +  +G +V   +  
Sbjct: 985  TG--LLLAVEGPAAKRTMRQTRKDSEAVDEDEEVDATLVVGTVKKHTLSIGDMVTGTVKS 1042

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK-- 1127
            IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I     K+ K  
Sbjct: 1043 IKPTHVVVTLADGIIGCIHASHILDDVPAGTSPT-AKLKVGKTVTARVIGGRDVKTFKFL 1101

Query: 1128 PDMKKSFLW---ELSIKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDN 1176
            P     F+    ELS++PS L     T     S    E+      GQ VT ++  Y V  
Sbjct: 1102 PISHPRFIRTIPELSVRPSELEKDGHTALNTHSVSPLEKIKQYQAGQTVTCFLKKYNVVK 1161

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
            +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V++ +  K  L L L  
Sbjct: 1162 KWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALKATVVNPDSSKAFLCLSL-- 1219

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
                       I   N++    +G++  GR+ K+ +   GL V       GRV       
Sbjct: 1220 -----------IGPHNLE----KGEVAMGRVVKV-TPKKGLTVSFPFGKIGRVSI----- 1258

Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
              VSD    Y E    PL  +   + V+C VL  +  V     + LSLRS     S TN 
Sbjct: 1259 FHVSD---SYSE---TPLEDFTPQKVVRCYVLSTAGHV-----LTLSLRS-----SRTNP 1302

Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
               S   D     +  ++D+    +++GYVK+V   G    L   +   V L+       
Sbjct: 1303 ETKSKIADP---EINSLKDIREGQLLRGYVKSVQPHGVLFGLGPSV---VGLAQYPHVSQ 1356

Query: 1417 ESP------EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
             SP       +  P GKL+  +VLS+      VE++    D+
Sbjct: 1357 YSPTEKALYNRHLPEGKLLTAKVLSLNHQKNLVELSFLPGDT 1398



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 102/246 (41%), Gaps = 35/246 (14%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K+F  GQ++ ATV+  P SS A   L L+                  + + G
Sbjct: 1185 FKVLKHPDKKFRIGQALKATVVN-PDSSKAFLCLSLIGP---------------HNLEKG 1228

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P + L + F  G  GR+ I  V+D  S   E    +F   + V   +++
Sbjct: 1229 EVAMGRVVKVTPKKGLTVSFPFGKIGRVSIFHVSDSYS---ETPLEDFTPQKVVRCYVLS 1285

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1286 TAG-------HVLTLSLRSSR-TNPETKSKIADPEINSLKDIREGQLLRGYVKSVQPHGV 1337

Query: 1180 LLTISRHLK--AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            L  +   +   AQ +   S Y P+E   + R    GK +T  VLS+N +K L+ L   P 
Sbjct: 1338 LFGLGPSVVGLAQ-YPHVSQYSPTEKALYNRHLPEGKLLTAKVLSLNHQKNLVELSFLPG 1396

Query: 1238 QDGISD 1243
              G  D
Sbjct: 1397 DTGKPD 1402


>gi|410251480|gb|JAA13707.1| programmed cell death 11 [Pan troglodytes]
 gi|410295644|gb|JAA26422.1| programmed cell death 11 [Pan troglodytes]
          Length = 1871

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 405/1486 (27%), Positives = 683/1486 (45%), Gaps = 180/1486 (12%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  RVQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKARVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVINCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     +  G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              A+V+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AVVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITE 1073
            T   LLL ++  +   T    R                     KK +  +G +V   +  
Sbjct: 988  TG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKS 1045

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+
Sbjct: 1046 IKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KT 1100

Query: 1134 FLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YK 1173
            F +             ELS++PS L    T     S    E+      GQ VT ++  Y 
Sbjct: 1101 FKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYN 1160

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L 
Sbjct: 1161 VVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLS 1220

Query: 1234 LR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
            L  P +                  + EG++  GR+ K+     GL V           F 
Sbjct: 1221 LTGPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FG 1253

Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1352
            ++  + +      Y E    PL  +   + V+C +L  +  V     + LSLR      S
Sbjct: 1254 KIGTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------S 1299

Query: 1353 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1412
            S  + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S
Sbjct: 1300 SRTNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYS 1354

Query: 1413 DGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                 SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1355 HVSQHSPSKKTLYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|156120853|ref|NP_001095573.1| protein RRP5 homolog [Bos taurus]
 gi|224493288|sp|A7MB10.1|RRP5_BOVIN RecName: Full=Protein RRP5 homolog; AltName: Full=Programmed cell
            death protein 11
 gi|154425541|gb|AAI51278.1| PDCD11 protein [Bos taurus]
          Length = 1874

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 415/1481 (28%), Positives = 684/1481 (46%), Gaps = 180/1481 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   KK +K   KT++   ET   
Sbjct: 8    FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 63

Query: 107  LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                     S K  R   +I  ++++  GM++ G V EVNE +L I LP GL+G  +  +
Sbjct: 64   ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTE 114

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     LP +F  G LV C+V  LD  K    K+ + LSL  
Sbjct: 115  ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS ET++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +  +R VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L FL++F+G VD  HL      T + N     ++V A +L V P +RAV L+L P
Sbjct: 293  PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +   ++G + D   V       G    +      T AY   + ++  + 
Sbjct: 348  VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKGKV+ + 
Sbjct: 405  TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
              G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    K+K++ +T KKT
Sbjct: 465  PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y +A   L THG+I +++ +GC V+FYN VQG  PR EL  +   +P S
Sbjct: 525  LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDDLVKLGSLVSG--VVDV----V 680
            +++ GQVVK  +++  P+  R+ LSF +   P +  E    K    VS   + DV     
Sbjct: 585  VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEK 644

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+      G +PT HL+DH+ +  ++   ++ G    ++L L      +LL 
Sbjct: 645  TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 703

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V NI + G FV+F   L+G AP++   D  
Sbjct: 704  RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 763

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 764  VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823

Query: 856  LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
                 +  S L + +     G  ++ +V E  + G V+ F E   V G +   + +  AG
Sbjct: 824  RSLMSNRDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +E G   +A IL+V   +  V +SL    +        NR+A+K K+  +        
Sbjct: 882  QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
              + AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 926  --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 984  GVTG--LLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTV 1041

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097

Query: 1132 K-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV-- 1171
               FL            ELS++PS L      T++      L +      GQ VT ++  
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKK 1157

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--L 1229
            Y +  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+   +  K  L
Sbjct: 1158 YNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFL 1217

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
               ++ P +                  + +G++  GR+ K+ +   GL V      +GRV
Sbjct: 1218 CLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFP---FGRV 1255

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
                +    VSD  S      F P       Q V+C VL  +  V     + LSLRS   
Sbjct: 1256 GRVSM--FHVSDSYSETHLEDFVP------QQVVRCYVLSAATPV-----LTLSLRS--- 1299

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
              S TN    S   D     +  IEDL    +++G+VK+V   G  + L   +       
Sbjct: 1300 --SRTNPETKSKITDP---EINSIEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHP 1354

Query: 1410 NLS--DGYVESP-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            ++S  +    +P ++  P GKL+  +VL +      VE++L
Sbjct: 1355 HVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 114/543 (20%), Positives = 205/543 (37%), Gaps = 113/543 (20%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+  T++ G ++   +  +     LVD+ +        R     ++AQ+  R++     L
Sbjct: 179  LSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGA-----RAFLPLQKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
             V Q +N ++E VK +  V++L     SIG++ VS                   A +   
Sbjct: 234  KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
              S T   LL                         G +V+A++ ++ PL L LKF   F 
Sbjct: 270  EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            G +    ++  K+      FSN    Q V A ++         ++    LS++P  L   
Sbjct: 306  GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353

Query: 1149 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1205
               ++LL ++    +    V G+       + L   T++   +  L      ++P     
Sbjct: 354  RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
                F  G      ++  ++  +L  L LR     I +      +D     I  G +V G
Sbjct: 411  ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
            ++  I     G+VV++G  + G V    L +I + +P   Y  G        DE   VKC
Sbjct: 459  KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKC 505

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
            +VL      +      ++L+ +L              V++    +   +D  P +   G+
Sbjct: 506  RVLLCDPKAKKLM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGF 548

Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
            +  V   GC +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ +
Sbjct: 549  ILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLL 608

Query: 1446 TLK 1448
            + +
Sbjct: 609  SFR 611



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 69/402 (17%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557

Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1233
            ++     ++  +    L + Y P      +  F+ G+ V   VL+   +KE+ LL  RL+
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILSGV-GGLVVQIGPH-LYGRV 1289
              P Q+G             Q+   +  +  G+++  K+L     GL V + PH + G +
Sbjct: 614  SDPKQEG-----------EGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFL 662

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
                L +   + PL       +  L   D    V C  L +S   R     + +L S+++
Sbjct: 663  PTAHLSDHVTNGPLL------YHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVE 713

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
            G                G++ +   ++ P M++ G+VKN+   G F+     L      +
Sbjct: 714  G----------------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKA 757

Query: 1410 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
             LSD +V S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 758  ILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 5/118 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1435 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              +P +K++ +TLK +  +S+  +   I    +   G    G I RV+ YG  +   N
Sbjct: 509  LCDPKAKKLMMTLKKTLVESKLPA---ITCYDDAKPGLQTHGFILRVKDYGCIVKFYN 563


>gi|37359824|dbj|BAC97890.1| mKIAA0185 protein [Mus musculus]
          Length = 1866

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 408/1491 (27%), Positives = 685/1491 (45%), Gaps = 181/1491 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 14   FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 73

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 74   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 121

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 122  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 179

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 180  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 239

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 240  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 299

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 300  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 354

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 355  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 411

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 412  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 471

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 472  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 531

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL +++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 532  VTSKLPLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 591

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF +      +D            V++G LV   V  
Sbjct: 592  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 651

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 652  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 710

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 711  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 770

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 771  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 830

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 831  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 890

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 891  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KPRKLRKSSR----HQ 935

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 936  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 992

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK------------------RAKKKSSYDV 1063
             T   L+L ++  +          ++ET   K                  ++KK+ S  +
Sbjct: 993  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEKEEENLTVKSKKRHSLAI 1050

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+I 
Sbjct: 1051 GDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARVIG 1109

Query: 1124 ----KSNK--PDMKKSF---LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRVTG 1169
                K++K  P     F   + ELS++PS L  S       S+   E+      GQ VT 
Sbjct: 1110 GRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVTC 1169

Query: 1170 YV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
            +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  +  +
Sbjct: 1170 FFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPR 1229

Query: 1228 KLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
              L L ++ P++                  + EG++  GR+ K++    GL V       
Sbjct: 1230 AFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFGKI 1270

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
            G+V    L +         Y E    PL  +   + V+C +L  +  V     + LSLRS
Sbjct: 1271 GKVSMFHLSD--------SYSEA---PLEDFCPQKIVRCYILSTAHRV-----LALSLRS 1314

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
            S     + N       ++ P   +  IED+    +++GYVK V      I L   +    
Sbjct: 1315 SRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLA 1366

Query: 1407 LLSNLSDGYVESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
              S++S+     PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1367 KYSHVSECV--PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1415


>gi|380792079|gb|AFE67915.1| protein RRP5 homolog, partial [Macaca mulatta]
          Length = 1431

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 405/1480 (27%), Positives = 689/1480 (46%), Gaps = 168/1480 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V      +G++    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSIF 1261

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
            +  VSD    Y E    PL  +   + V+C +L  + +V     + LSLR      SS  
Sbjct: 1262 H--VSD---SYSE---TPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRT 1302

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
            + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +      S++S   
Sbjct: 1303 NPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHS 1360

Query: 1416 VESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                    K  P GKL+  RVL +      VE++    D+
Sbjct: 1361 SSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|47124316|gb|AAH70468.1| Programmed cell death 11 [Mus musculus]
          Length = 1862

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 408/1493 (27%), Positives = 686/1493 (45%), Gaps = 183/1493 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF +      +D            V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
             T   L+L ++  +          ++ET   K                    ++KK+ S 
Sbjct: 987  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
             +G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103

Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRV 1167
            I     K++K  P     F   + ELS++PS L  S       S+   E+      GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
              G+V    L +         Y E    PL  +   + V+C +L  +  V     + LSL
Sbjct: 1265 KIGKVSMFHLSD--------SYSEA---PLEDFCPQKIVRCYILSTAHRV-----LALSL 1308

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            RSS     + N       ++ P   +  IED+    +++GYVK V      I L   +  
Sbjct: 1309 RSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLG 1360

Query: 1405 KVLLSNLSDGYVESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                S++S+     PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1361 LAKYSHVSECV--PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411


>gi|390473341|ref|XP_002756467.2| PREDICTED: protein RRP5 homolog [Callithrix jacchus]
          Length = 1880

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 408/1486 (27%), Positives = 697/1486 (46%), Gaps = 180/1486 (12%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 19   FPRGGTRKIHKPEKAFQQSIEQDNLFDISTEEGSTKRKKSQKVPAKTKKLKIEKRE---- 74

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 75   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 128

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L   ++  GK+ + LSL    +
Sbjct: 129  AYTKKLNEQVMQEQPLKDLFHLPELFSPGMLVRCVVSSLSITER--GKKSVKLSLNPKNV 186

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 187  NRVLSAEVLKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIQQKNKGAKLKV 246

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +  +  VV+LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 247  GQYLNCIIEEVKGSGGVVHLSIGHLEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 306

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L++ P  L
Sbjct: 307  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVKACILCVHPRTRVVRLSMRPIFL 361

Query: 397  HNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P S +    +G +     V    +  G    +    +   AY  +S +++ +    
Sbjct: 362  QPGRPLSRLSCQHLGAVLTDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 418

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG VVKG V+ +  +G
Sbjct: 419  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGAVVKGTVLTIKPYG 478

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 479  MLVKVGEQMRGLVPHMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLVMTLKKTLVE 538

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL  ++ +A+A   L THG+I +++ +GC V+FY+ VQG  P+ EL  +   +P  +++
Sbjct: 539  SKLPAITCFADAKPGLQTHGFIIRVKDYGCIVKFYSDVQGLVPKHELSTEYIPDPERVFY 598

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM----KPTR------VSEDDLVKLGSLVSGVVDVVT 681
             GQVVK  +++S P+  R+ LSF +    +P +        ++  + +G LV   V   T
Sbjct: 599  TGQVVKVAVLNSEPSKERMLLSFKLLRDPEPKKEPAGHNQKKEKAINVGQLVDVKVLEKT 658

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+    ++  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 659  KDGLEVAVLPHN-TRAFLPTSHLSDHVTNGPLLHHWLQAGDTLHRVLCLSQSEGHVLLCR 717

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 718  KPALVSTVEGGQDPKNFSEIHPGMLLVGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 777

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S+ +  GQ+V + + +V+ E  R+ LSL+ S C   D +      L +  E++  ++
Sbjct: 778  TSTSEHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVR 837

Query: 858  SSKHNGSEL------KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 911
            S   N   +      +   G  +  V++ KV E  D  VV S     ++    + +   G
Sbjct: 838  SLMSNRDSVLIQTLAEMTPGMFLDLVVQ-KVLE--DGSVVFSGGPVPNLVLRASRYHRGG 894

Query: 912  ATVESGSVIQAAIL--DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
              VESG   +  IL  D+ K E LV L    V          NR+A+K ++  E      
Sbjct: 895  QEVESGQKKKVVILNVDLLKLEVLVSLHQDLV----------NRKAKKLRKGSE------ 938

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
             HQ   A+V+ +++++ + SL E  H + ++  S  N T +F  ++   GQ V  T+   
Sbjct: 939  -HQ---AVVQHLEKSFAIASLVETGHLVAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTT 994

Query: 1029 PSSST----------AGRLLLLLKAISET-------ETSSSKRAKKKSSYDVGSLVQAEI 1071
                T          A R + L +  SET       + + +    KK ++ +G +V   +
Sbjct: 995  EPGVTGLLLAVEGPAAKRTMRLTRKDSETVDEDEEVDPALTVGTIKKHTFSIGDMVTGTV 1054

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I      DMK
Sbjct: 1055 KSIKPTHVVVTLKDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMK 1110

Query: 1132 K-SFL-----------WELSIKPSML----TVSEIGSKLLFEECD-VSIGQRVTGYV--Y 1172
               FL            ELS++PS L    T     S    E+      GQ VT ++  Y
Sbjct: 1111 TFKFLPISHPRFVRTVPELSVRPSELEDGHTALNTHSVSPMEKIKRYQAGQTVTCFLKKY 1170

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  LRL
Sbjct: 1171 NVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLRL 1230

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
             L             I    ++    EG++  GR+ K+     GL +      +G++   
Sbjct: 1231 SL-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTISFP---FGKIGTV 1269

Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1352
             L    VSD    Y E    PL  +   + V+C +L     V     + LSLR      S
Sbjct: 1270 SL--FHVSD---SYSE---TPLEDFVPQKVVRCYILSTEDNV-----LTLSLR------S 1310

Query: 1353 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1412
            S  + +  + V+ P   +  I+D+    +++GYV+++   G F  L   +   V L+   
Sbjct: 1311 SRTNPETKSKVEDP--EINSIQDIKEGQLLRGYVRSIQPHGVFFGLGPSV---VGLARYP 1365

Query: 1413 DGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                 SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1366 HVSQHSPSKKALYNKHLPKGKLLTARVLRLNHQKNLVELSFLPGDT 1411


>gi|449505853|ref|XP_002193665.2| PREDICTED: protein RRP5 homolog [Taeniopygia guttata]
          Length = 1834

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 392/1476 (26%), Positives = 688/1476 (46%), Gaps = 165/1476 (11%)

Query: 54   FPRGG-----GHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
            FPRGG         T + + E     D + E   +   +  K ++K+   KA++TV    
Sbjct: 8    FPRGGIQKKPAKGKTPKPKSERDNLFDVQHEEKSQKRKRSQKDQEKQKRFKADKTVK--- 64

Query: 109  SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAAD 165
            +   D +    P     +T++ +S GM L G + EV++ +L I LP GL G   + + +D
Sbjct: 65   AAVKDNVMNIGP-----LTVEALSEGMLLLGCIKEVSDYELAISLPNGLSGFVPVTQISD 119

Query: 166  ALDPILDNEIE----ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
            A   +L  ++       E N LP IF  G LV CIV  ++  K + G+R + LS+    +
Sbjct: 120  AYSKLLTKQVAQGEVPEELNSLPDIFSPGTLVRCIVTSVE--KSDDGRRSVKLSIDPEKV 177

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKP 276
             KGL+   +  GMVL+  V S+EDHGY++  G+     FLP         A   G D+K 
Sbjct: 178  NKGLNSAALTAGMVLSGSVLSVEDHGYLIDIGIAGTHAFLPHQKAKNYIKAVKKGPDLKI 237

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +    +VV LS D   V+  +  + +  ++  L+PG++V  RVQ +   G
Sbjct: 238  GQNLNCLIVEVKNEGRVVSLSIDRSEVAASIATERQNWTLSNLLPGLVVKARVQKVFPLG 297

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + ++FL+YFTG VD  H   T P  +    Y+  + V A +L V PTSRAV LTL P  L
Sbjct: 298  MKVTFLSYFTGIVDFMH---TDPEKSM--SYSPDQVVKACVLSVHPTSRAVRLTLRPPFL 352

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
            H    P  +   ++G + +++ V    +  G + ++      T A+  +  +++      
Sbjct: 353  HAGGAPRQLPAQRMGAVVEEATVKAFYKQFGAIFELDD---GTLAFARLKHLSKTRKSFK 409

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
               ++EG   + RI+ +  ++ +    LK    E     + D+  G VV+GKV+++   G
Sbjct: 410  PGAFQEGCKHKCRIIAYSLMDEMCIVSLKHQIIEARFLQYQDIHTGDVVQGKVLSLKPIG 469

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
              V+   G++ L P  H+S+  + +P KK+ +G E+  RVL    + K++ +T KK+LV+
Sbjct: 470  MQVKVADGIRGLVPSLHLSDVILKQPEKKYNIGDEVKCRVLECNPEGKKLILTLKKSLVQ 529

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +LS+Y +A   LITHG++    + GC V+FYN V+G  P++ELG +P   P  +++
Sbjct: 530  SKLPVLSNYEDAKPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFY 589

Query: 632  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----------VKLGSLVSGVVDVV 680
             GQV+K  ++   P   R+ LSF +      ED              ++G +V   +   
Sbjct: 590  EGQVLKVMVLKCEPQQERLLLSFRLSSKPGPEDKWKCTPKEKQEVKYQIGEIVDVRILKK 649

Query: 681  TPNAVVVYVIA-KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
              N + V ++  +      IP  HL+D ++ + ++   ++ G    ++L L  +  +L+L
Sbjct: 650  KDNGLEVSILEDEDNVVAWIPMLHLSDFVDISKLLWHCLREGDVLPRVLYLSAKGEHLIL 709

Query: 740  SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            S K ++I++ Q+  +  + S I P  ++ GYV N++  G FV F   +TG AP+    D 
Sbjct: 710  SRKSAVISAVQEEKVVRNFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDK 769

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS-----FMQEHFL-LEE 851
               D    + VGQ+V + ++  + E  R+ L+LK S CSS D++      + ++F  L+E
Sbjct: 770  FVTDTKDHFVVGQTVIAKVMSTDEEKQRVLLNLKVSECSSGDSASESFDLLNQYFKELKE 829

Query: 852  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 911
               +L+  + +  EL  V G  +  V++  V E  D   + S    + +    T + L  
Sbjct: 830  IRDLLRRGEPSICEL--VPGKRVHLVVQD-VRE--DGSALFSGSPVTGLTVTATRYHLGD 884

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +  G   +  +L V      V +SL+   +          + + K+R RE S+     
Sbjct: 885  KNIAPGEKRKVLVLHVDALTSEVYVSLREELL----------KQRPKRRLRENSQH---- 930

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
               + +V+ + E++ + SL E            +N T +F  ++   GQ + AT+ A+  
Sbjct: 931  ---SVVVQHITEHFAIASLLETGQLAAVPIACHFNDTFRFDSEKLRVGQKISATLKAV-K 986

Query: 1031 SSTAGRLL---------LLLKAISETETSSSKRAKK-KSSYDVGSLVQAEITEIKPLELR 1080
             +  G LL         + ++  +E+ET+  +     K S   G +V   +  +KP  + 
Sbjct: 987  ENNHGVLLAVQGPAKKNVFVRVRNESETALEEVLPAVKHSLSPGDVVTGTVKSVKPTHVT 1046

Query: 1081 LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN----------KPDM 1130
            +       G IH + + D+   +     S  + GQ VTAR+I   +           P  
Sbjct: 1047 VAIDDKLTGSIHASRILDE-VPIGSFPTSTLQAGQKVTARVIGGRDVNTHRCLPITHPHF 1105

Query: 1131 KKSFLWELSIKPS--------MLTVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWAL 1180
             +S + ELSI+PS        ML + E  S  L +    ++GQ VT +V  Y +   W  
Sbjct: 1106 TQS-IPELSIRPSEQEGEFTAMLNLKEESS--LKQLGLYNVGQTVTCFVKKYNMLKNWLE 1162

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            + ++  ++ ++  L  +     L+  ++ F  G+A++  V   +  ++ L L L   Q  
Sbjct: 1163 VEVAPDIRGRVPHLLLSLSTKVLKHPEKSFKNGQAISATVTGTDATERNLCLSLTGIQS- 1221

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
                            + +  I  G ++K+   V GL + +     G+V    L N   +
Sbjct: 1222 ----------------LEQDTISVGMVTKVTPHV-GLTIALPGGKTGKVSIFHL-NDTYT 1263

Query: 1301 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS-LDGMSSTNSSDL 1359
            D          +PL  +  G+ V+C +L I         ++LSLR S L+   ++   D+
Sbjct: 1264 D----------NPLGNFKVGKIVRCYILSIENG-----KIQLSLRQSRLNPKINSKVEDI 1308

Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1419
                      +  I+D+    +V+GYVK++T  G F  LS  L  ++L  N+S  +V+  
Sbjct: 1309 ---------EITSIKDVKKGQLVRGYVKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKH 1359

Query: 1420 ---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               +K  P GKL+  +VL V    K +E++L   D+
Sbjct: 1360 SLYKKYLPEGKLLTAKVLGVNRKEKHIELSLLPEDT 1395


>gi|402881399|ref|XP_003904261.1| PREDICTED: protein RRP5 homolog [Papio anubis]
          Length = 1871

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 408/1483 (27%), Positives = 691/1483 (46%), Gaps = 174/1483 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGMVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  ++ +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGTVLDDVPVQGFFKKAGATFRLKDGVL---AYARLNHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V      +G++    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI- 1260

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
               VSD    Y E    PL  +   + V+C +L  + +V     + LSLR      SS  
Sbjct: 1261 -FHVSD---SYSE---TPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRT 1302

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
            + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S   
Sbjct: 1303 NPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVS 1357

Query: 1416 VESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
              SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1358 QHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|54607128|ref|NP_035183.2| protein RRP5 homolog [Mus musculus]
 gi|224493305|sp|Q6NS46.2|RRP5_MOUSE RecName: Full=Protein RRP5 homolog; AltName: Full=Apoptosis-linked
            gene 4 protein; AltName: Full=Programmed cell death
            protein 11
          Length = 1862

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 408/1493 (27%), Positives = 686/1493 (45%), Gaps = 183/1493 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF +      +D            V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
             T   L+L ++  +          ++ET   K                    ++KK+ S 
Sbjct: 987  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
             +G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103

Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRV 1167
            I     K++K  P     F   + ELS++PS L  S       S+   E+      GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
              G+V    L +         Y E    PL  +   + V+C +L  +  V     + LSL
Sbjct: 1265 KIGKVSMFHLSD--------SYSEA---PLEDFCPQKIVRCYILSTAHRV-----LALSL 1308

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            RSS     + N       ++ P   +  IED+    +++GYVK V      I L   +  
Sbjct: 1309 RSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLG 1360

Query: 1405 KVLLSNLSDGYVESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                S++S+     PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1361 LAKYSHVSECV--PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411


>gi|332835295|ref|XP_508013.3| PREDICTED: protein RRP5 homolog [Pan troglodytes]
 gi|410355317|gb|JAA44262.1| programmed cell death 11 [Pan troglodytes]
          Length = 1871

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 404/1486 (27%), Positives = 683/1486 (45%), Gaps = 180/1486 (12%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVINCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     +  G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              A+V+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AVVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITE 1073
            T   LLL ++  +   T    R                     KK +  +G +V   +  
Sbjct: 988  TG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKS 1045

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+
Sbjct: 1046 IKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KT 1100

Query: 1134 FLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YK 1173
            F +             ELS++PS L    T     S    E+      GQ VT ++  Y 
Sbjct: 1101 FKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYN 1160

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L 
Sbjct: 1161 VVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLS 1220

Query: 1234 LR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
            L  P +                  + EG++  GR+ K+     GL V           F 
Sbjct: 1221 LTGPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FG 1253

Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1352
            ++  + +      Y E    PL  +   + V+C +L  +  V     + LSLR      S
Sbjct: 1254 KIGTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------S 1299

Query: 1353 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1412
            S  + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S
Sbjct: 1300 SRTNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYS 1354

Query: 1413 DGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                 SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1355 HVSQHSPSKKTLYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|296472696|tpg|DAA14811.1| TPA: programmed cell death 11 [Bos taurus]
          Length = 1874

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 415/1481 (28%), Positives = 680/1481 (45%), Gaps = 180/1481 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   KK +K   KT++   ET   
Sbjct: 8    FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 63

Query: 107  LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                     S K  R   +I  ++++  GM++ G V EVNE +L I LP GL+G  +  +
Sbjct: 64   ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTE 114

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     LP +F  G LV C+V  LD  K    K+ + LSL  
Sbjct: 115  ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS ET++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +  +R VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L FL++F+G VD  HL      T + N     ++V A +L V P +RAV L+L P
Sbjct: 293  PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +   ++G + D   V       G    +      T AY   + ++  + 
Sbjct: 348  VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKGKV+ + 
Sbjct: 405  TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
              G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    K+K++ +T KKT
Sbjct: 465  PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y +A   L THG+I +++ +GC V+FYN VQG  PR EL  +   +P S
Sbjct: 525  LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSE------DDLVKLGSLVSGVVDVV 680
            +++ GQVVK  +++  P+  R+ LSF +   P +  E         V  G LV   V   
Sbjct: 585  VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEK 644

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+      G +PT HL+DH+ +  ++   ++ G    ++L L      +LL 
Sbjct: 645  TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 703

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V NI + G FV+F   L+G AP++   D  
Sbjct: 704  RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 763

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 764  VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823

Query: 856  LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
                 +  S L + +     G  ++ +V E  + G V+ F E   V G +   + +  AG
Sbjct: 824  RSLMSNRDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +E G   +A IL+V   +  V +SL    +        NR+A+K K+  +        
Sbjct: 882  QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
              + AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 926  --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 984  GVTG--LLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTV 1041

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097

Query: 1132 K-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYVYK 1173
               FL            ELS++PS L      T++      L +      GQ VT ++ K
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKK 1157

Query: 1174 --VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--L 1229
              +  +W  + I+   + ++ +L ++     L+   ++F IG+A+   V+   +  K  L
Sbjct: 1158 SIMVKKWLEVEIAPDFRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFL 1217

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
               ++ P +                  + +G++  GR+ K+ +   GL V       GRV
Sbjct: 1218 CLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFPFGRVGRV 1258

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
                     VSD  S      F P       Q V+C VL  +  V     + LSLRS   
Sbjct: 1259 SM-----FHVSDSYSETHLEDFVP------QQVVRCYVLSAATPV-----LTLSLRS--- 1299

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
              S TN    S   D     +  IEDL    +++G+VK+V   G  + L   +       
Sbjct: 1300 --SRTNPETKSKITDP---EINSIEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHP 1354

Query: 1410 NLS--DGYVESP-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            ++S  +    +P ++  P GKL+  +VL +      VE++L
Sbjct: 1355 HVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 114/543 (20%), Positives = 205/543 (37%), Gaps = 113/543 (20%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+  T++ G ++   +  +     LVD+ +        R     ++AQ+  R++     L
Sbjct: 179  LSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGA-----RAFLPLQKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
             V Q +N ++E VK +  V++L     SIG++ VS                   A +   
Sbjct: 234  KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
              S T   LL                         G +V+A++ ++ PL L LKF   F 
Sbjct: 270  EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            G +    ++  K+      FSN    Q V A ++         ++    LS++P  L   
Sbjct: 306  GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353

Query: 1149 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1205
               ++LL ++    +    V G+       + L   T++   +  L      ++P     
Sbjct: 354  RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
                F  G      ++  ++  +L  L LR     I +      +D     I  G +V G
Sbjct: 411  ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
            ++  I     G+VV++G  + G V    L +I + +P   Y  G        DE   VKC
Sbjct: 459  KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKC 505

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
            +VL      +      ++L+ +L              V++    +   +D  P +   G+
Sbjct: 506  RVLLCDPKAKKLM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGF 548

Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
            +  V   GC +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ +
Sbjct: 549  ILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLL 608

Query: 1446 TLK 1448
            + +
Sbjct: 609  SFR 611



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 168/399 (42%), Gaps = 63/399 (15%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557

Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1233
            ++     ++  +    L + Y P      +  F+ G+ V   VL+   +KE+ LL  RL+
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFT 1292
              P Q+G      +  +   +  +  G +V  ++  +     GL V + PH + G +   
Sbjct: 614  SDPKQEG------EGQSQKKKKAVSAGQLVDVKV--LEKTKDGLKVAVLPHNIPGFLPTA 665

Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1352
             L +   + PL       +  L   D    V C  L +S   R     + +L S+++G  
Sbjct: 666  HLSDHVTNGPLL------YHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVEG-- 714

Query: 1353 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1412
                          G++ +   ++ P M++ G+VKN+   G F+     L      + LS
Sbjct: 715  --------------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILS 760

Query: 1413 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
            D +V S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 761  DKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799



 Score = 48.5 bits (114), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 5/118 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1435 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              +P +K++ +TLK +  +S+  +   I    +   G    G I RV+ YG  +   N
Sbjct: 509  LCDPKAKKLMMTLKKTLVESKLPA---ITCYDDAKPGLQTHGFILRVKDYGCIVKFYN 563


>gi|355562752|gb|EHH19346.1| hypothetical protein EGK_20032 [Macaca mulatta]
          Length = 1871

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 405/1480 (27%), Positives = 688/1480 (46%), Gaps = 168/1480 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVIGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V      +G++    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI- 1260

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
               VSD    Y E    PL  +   + V+C +L  + +V     + LSLR      SS  
Sbjct: 1261 -FHVSD---SYSE---TPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRT 1302

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
            + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +      S++S   
Sbjct: 1303 NPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHS 1360

Query: 1416 VESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                    K  P GKL+  RVL +      VE++    D+
Sbjct: 1361 SSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|383416723|gb|AFH31575.1| protein RRP5 homolog [Macaca mulatta]
          Length = 1871

 Score =  418 bits (1074), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 405/1480 (27%), Positives = 688/1480 (46%), Gaps = 168/1480 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V      +G++    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI- 1260

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
               VSD    Y E    PL  +   + V+C +L  + +V     + LSLR      SS  
Sbjct: 1261 -FHVSD---SYSE---TPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRT 1302

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
            + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +      S++S   
Sbjct: 1303 NPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHS 1360

Query: 1416 VESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                    K  P GKL+  RVL +      VE++    D+
Sbjct: 1361 SSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|384945910|gb|AFI36560.1| protein RRP5 homolog [Macaca mulatta]
          Length = 1871

 Score =  417 bits (1073), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 405/1480 (27%), Positives = 688/1480 (46%), Gaps = 168/1480 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V      +G++    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI- 1260

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
               VSD    Y E    PL  +   + V+C +L  + +V     + LSLR      SS  
Sbjct: 1261 -FHVSD---SYSE---TPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRT 1302

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
            + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +      S++S   
Sbjct: 1303 NPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHS 1360

Query: 1416 VESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                    K  P GKL+  RVL +      VE++    D+
Sbjct: 1361 SSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|431895473|gb|ELK04989.1| Protein RRP5 like protein [Pteropus alecto]
          Length = 2041

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 413/1514 (27%), Positives = 693/1514 (45%), Gaps = 196/1514 (12%)

Query: 37   AVEAQDLALPPDDDVPV----FPRGGGHSLTQRER--------DEIHAEVDAEFEAVERG 84
            AV A+ L L  D ++      FPRGG     + E+        D +  ++  E E+ +R 
Sbjct: 152  AVVARPLKLRGDPNMATMEESFPRGGTRKTHKSEKAFKQTVEQDNLF-DISTEEESTKRK 210

Query: 85   LHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEV 144
              +K   K KK + +  E+       F              ++++++  GM++ G V EV
Sbjct: 211  KSQKGPVKTKKLKIEKRESNKSAREKF------------EILSIESLCEGMRILGCVKEV 258

Query: 145  NEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIV 197
            NE +LVI LP GL+G  +  +  D      NE  A E+ L     LP +F  G LV C+V
Sbjct: 259  NELELVISLPNGLQGFVQVTEICDAYTKKLNEQVAQEEPLKDLVHLPELFSPGMLVRCVV 318

Query: 198  LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
              L   ++  GK+ + LSL    + K LS E ++ GM+LT  V S+EDHGY++  G+   
Sbjct: 319  SSLGITER--GKKSVKLSLNPKNVNKVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGA 376

Query: 258  TGFLP-----RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 312
              FLP       N  +N G  +K G  L  ++  +  +  VV LS D   VS  +  + +
Sbjct: 377  RAFLPLQKAQEYNRQKNKGAKLKVGQYLNCIIEEVKGSGGVVTLSIDHSEVSTAIATEEQ 436

Query: 313  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
              +++ L+PG++V  ++Q +   G+ L+FL++FTG VD  HL      T     Y  ++ 
Sbjct: 437  NWTLNNLLPGLVVKAQIQKVTPLGLTLNFLSFFTGLVDFMHLDPKKAGT-----YCSNQA 491

Query: 373  VNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 427
            V A +L V P +R V L+L P  LH      R    H+  G + D   V       G   
Sbjct: 492  VRACVLCVHPRTRVVRLSLRPVFLHPGRSLTRLTCQHL--GAVLDDVPVQSFFNKAGATF 549

Query: 428  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
             +    +   AY  +S +++ +     + +K G+  + RI+ F  ++ LA   L+ S  E
Sbjct: 550  RLKDGSL---AYARLSHLSDSKTVFSPEAFKPGNTHKCRIIDFSQMDELAVLSLRTSIIE 606

Query: 488  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
               F + D+KPG +VKG V+ +  +G +V     ++ L P  H+++ ++  P KK+ +G 
Sbjct: 607  AQYFRYHDIKPGALVKGTVLTIKPYGMLVNVGEQIRGLVPPMHLADIQMKNPEKKYHIGD 666

Query: 548  ELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            E+  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L THG+I +++ +GC V+F
Sbjct: 667  EVTCRVLLCDPEAKKLMITLKKTLVESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKF 726

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR--- 660
            YN VQG  P+ EL  +   +P  +++ GQVVK  +++  PA  R+ LSF +  +P +   
Sbjct: 727  YNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVAVLNCEPARERMLLSFKLLGEPEKERA 786

Query: 661  ---VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
                 +   V +G LV   V   T + + V V+        +PT HL+DH+ +  ++   
Sbjct: 787  GHSQKKRKAVNIGQLVDVKVLEKTRDGLEVAVLPHNIP-AFLPTSHLSDHVANGPLLYHW 845

Query: 718  IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIET 775
            ++ G    ++L L      ++L  K +L+++ +  Q P   S I P  ++ G+V +I + 
Sbjct: 846  LQAGDTLHRVLCLSQSEGRIILCRKPALVSTMEGGQDPKSFSEIQPGMLLIGFVKSIKDY 905

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ LSL+ S C
Sbjct: 906  GVFIQFPSGLSGLAPKAVMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDC 965

Query: 836  SSTDASFMQEHF---LLEE--KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
            +  D +          LEE   +  L S++ +   ++ +     G V++ +V E  + G 
Sbjct: 966  ALGDLATTSLLLLSQCLEEWQGVRSLMSNR-DSVLIQTLAEMTPGMVLDLEVQEVLEDGS 1024

Query: 891  VVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            V+ F E   V G +   + +  AG  VESG   +A IL+V   +  V +SL    +    
Sbjct: 1025 VI-FSE-GPVPGLVLRASKYHRAGQEVESGQKKKAVILNVDMLKLEVHVSLCHNLV---- 1078

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN- 1006
                NR+A+K K+  E       HQ   AIV+ ++E++ + SL E  H   ++  S  N 
Sbjct: 1079 ----NRKAKKLKKGSE-------HQ---AIVQHLEESFAIASLVETGHLAAFSLTSHLND 1124

Query: 1007 TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK---------- 1056
            T +F  ++   GQ V  T+       T   L +   A   T   + K ++          
Sbjct: 1125 TFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRRTQKDSETVDEDDEADP 1184

Query: 1057 -------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
                   KK +  +G +V   +  +KP  + +    G  G IH + + DD   V     +
Sbjct: 1185 AMVVGTLKKHTLSIGDMVTGTVKSVKPTHVVVTLKDGIIGCIHASHILDD-VPVGTCPTA 1243

Query: 1110 NFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML-----TVSEIGS 1152
              K+G+TVTAR+I      DMK   FL            ELS++PS L     T     S
Sbjct: 1244 KLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSELEKDGHTALNTHS 1300

Query: 1153 KLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1209
                E+      GQ VT ++  Y V  +W  + ++  ++ ++ IL ++     L+   ++
Sbjct: 1301 VSPSEKIKQYQAGQTVTCFLKKYNVVKKWLEVEVAPDIRGRIPILLTSLSFKVLKHPDKK 1360

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            F IG+A+   V+  +  K  L L L             I    ++    +G++  GR+ K
Sbjct: 1361 FQIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE----KGEVAMGRVVK 1403

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV-----K 1324
            + +   GL V      +G++               G       P     +  F+     +
Sbjct: 1404 V-TPKKGLTVSFP---FGKIGTL----------WRGSQGPLLSPEMLKSQCFFLFCCHSR 1449

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
            C VL  +  V     + LSLRSS         ++  T    P   +  I+D+    +++G
Sbjct: 1450 CYVLSTAGHV-----LTLSLRSS--------RTNPETKSKIPDPEINSIQDIEEGQLLRG 1496

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLSVEP 1438
            YVK+V   G  + L   +   V L+        SP K+       P GKL+  +VLSV  
Sbjct: 1497 YVKSVEPHGVLLGLGPSV---VGLAQYPHVSQYSPSKKTLYNRHLPEGKLLTAKVLSVSH 1553

Query: 1439 LSKRVEVTLKTSDS 1452
                VE++    D+
Sbjct: 1554 QKNLVELSFLPGDT 1567


>gi|426366071|ref|XP_004050088.1| PREDICTED: protein RRP5 homolog [Gorilla gorilla gorilla]
          Length = 1871

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 404/1486 (27%), Positives = 683/1486 (45%), Gaps = 180/1486 (12%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IH   ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHAGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAKMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQK 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITE 1073
            T   LLL ++  +   T    R                     KK +  +G +V   +  
Sbjct: 988  TG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKS 1045

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            IKP  + +    G  G IH + + DD      +  +  K+G+ VTAR+I      DM K+
Sbjct: 1046 IKPTHVVVTLEDGIIGCIHASHILDDVPEGT-SATTKLKVGKMVTARVIGGR---DM-KT 1100

Query: 1134 FLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YK 1173
            F +             ELS++PS L    T     S    E+      GQ VT ++  Y 
Sbjct: 1101 FKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYN 1160

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L 
Sbjct: 1161 VVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLS 1220

Query: 1234 LR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
            L  P +                  + EG++  GR+ K+     GL V           F 
Sbjct: 1221 LTGPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FG 1253

Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1352
            ++  + +      Y E    PL  +   + V+C VL  +  V     + LSLR      S
Sbjct: 1254 KIGTVSIFHMSDSYSE---TPLEDFVPQKVVRCYVLSTADNV-----LTLSLR------S 1299

Query: 1353 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1412
            S  + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S
Sbjct: 1300 SRTNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIRPHGVFFRLGPSV---VGLARYS 1354

Query: 1413 DGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                 SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1355 HVSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|354500197|ref|XP_003512187.1| PREDICTED: protein RRP5 homolog [Cricetulus griseus]
 gi|344252409|gb|EGW08513.1| Protein RRP5-like [Cricetulus griseus]
          Length = 1870

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 387/1406 (27%), Positives = 659/1406 (46%), Gaps = 157/1406 (11%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL- 182
            ++++++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E+ L 
Sbjct: 75   LSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTQKLNEQVTQEEPLE 134

Query: 183  ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 238
                LP +F  G LV C+V  LD  ++  GK+ + LS+    + K LS E ++  M+LT 
Sbjct: 135  DLLRLPDLFSPGMLVRCVVSSLDITER--GKKSVKLSVNPKHVNKVLSAEALRPRMLLTG 192

Query: 239  YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
             V S+EDHGY++  G+     FL  +   E     N G ++K G  L  +V  +     V
Sbjct: 193  TVSSLEDHGYLVDIGVSGTRAFLSLHKAQEYIRQKNKGANLKIGQYLTCLVDEVKSNGAV 252

Query: 294  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            V LS +   +S     + +  +++ L+PG++V  +VQ + E G+ L+FLT+FTG VD  H
Sbjct: 253  VGLSIEHSEISSAFATEEQSWNLNNLLPGLVVKAQVQKVTEFGLQLNFLTFFTGLVDFMH 312

Query: 354  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
            L+           Y+  + V A IL + P +R V L+L P  L    P + +   ++G +
Sbjct: 313  LE-----PKKIGAYSSKQTVKACILCIHPRTRVVRLSLRPVFLQPGRPLTRISYQQLGAV 367

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
             D+  V    +  G    +    +   AY  +S +++ +     + +K GS  + RI+ +
Sbjct: 368  LDKVPVQGFFKKAGATFRLKDGAL---AYARLSHLSDSKKTFNPEAFKPGSTHKCRIIDY 424

Query: 471  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
              ++ LA   L+ S       ++ D+K G VVKG V+A+  FG +V+    ++ L P  H
Sbjct: 425  SQMDELALLSLRKSIITAQFLSYHDIKTGTVVKGTVLAIKPFGILVKVGEQMRGLVPSMH 484

Query: 531  MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
            + +  +  P KK+ +G E+  RVL    ++K++ +T KKTL+ SKL  +  Y +A   L 
Sbjct: 485  LGDIMMKNPEKKYHLGDEVKCRVLLCDPEAKKLIMTLKKTLITSKLPAIMCYEDAKPGLQ 544

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            THG I +++ +GC V+FYN VQG  P+ EL      +P  +++ GQVVK  +++S P+  
Sbjct: 545  THGVIIRVKSYGCIVKFYNSVQGLVPKHELSDQHIPDPEKVFYTGQVVKVAVLNSEPSKE 604

Query: 649  RINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
            R+ LSF +      ++D           V +G LV   V   T + + V ++    +   
Sbjct: 605  RLLLSFKLLSDSEPKNDSVEISQKKGRAVNIGQLVDVKVLEKTKDGLEVAILPHN-TPAF 663

Query: 699  IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDA 756
            +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   
Sbjct: 664  LPTPHLSDHVANGPLLHHWLQAGDTLHRVLCLSQGEKHILLCRKPALVSTVEGGQDPKSL 723

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            S I P  ++ G+V +I + G FV+F   L G AP++   D      S  + VGQ+V + +
Sbjct: 724  SEIQPGMLLIGFVKSIKDYGVFVQFPSGLNGLAPKAIMSDKFVTTPSDHFVVGQTVVAKV 783

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEG 871
             +V+ E  R+ LSL+ S CS  D +      LL + +  LQ      S  +   ++ +  
Sbjct: 784  TNVDEEKQRMLLSLRLSDCSLGDPA-STSFILLCQCLEELQGVRSLMSNQDSVLMQTLAE 842

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
               G V++  V E  + G VV      D+    + +  AG  V SG   +  +L V   +
Sbjct: 843  MTPGMVLDVMVQEVLEDGSVVFSGHVPDLILKASRYHRAGQEVASGQKRRVVVLHVDMLK 902

Query: 932  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 991
              V +SL+   + R           K ++ R++S+  G       IV+ ++E++ V SL 
Sbjct: 903  LEVHVSLRQDLVHR-----------KARKLRKSSRHQG-------IVQHLEESFAVASLM 944

Query: 992  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-------- 1042
            E    + ++  S  N T  F  ++   GQ V  T+       T   L+L ++        
Sbjct: 945  ETGQLVAFSLTSHLNDTFHFDSEKLHVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTS 1002

Query: 1043 --AISETETSSSK-----------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
              A  ++ET+  K           R KKK    +G  V   I  +K   + +    G  G
Sbjct: 1003 TPARRDSETADDKEEEEENSDLTVRTKKKHGLAIGDKVTGTIKSVKATHVVVTLEDGIIG 1062

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSI 1140
             IH + + DD   V  +  +  K+G+ VTAR+I     K++K  P     F   + ELSI
Sbjct: 1063 CIHASRILDD-VPVGTSPTTTLKVGEKVTARVIGGRDLKTSKFLPISHPRFVLTILELSI 1121

Query: 1141 KPSML-----TVSEIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLF 1192
            +PS L     +     S+   E+ +    GQ VT +   Y    +W  + ++  ++ ++ 
Sbjct: 1122 RPSELKKDGYSALNTHSESPLEKTEQYQAGQTVTCFFKKYNAIKKWLEVDVAPDIRGRIP 1181

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISND 1251
            +L ++     L+   + F +G+A+   V+  +  K  L L ++ P++             
Sbjct: 1182 LLLTSLSFKVLKHPDKMFQVGQALRATVVGSDVPKAFLCLSLIGPYK------------- 1228

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                 + +G+I  GR+  ++    GL +      +G+V    L    VSD    Y E   
Sbjct: 1229 -----LEQGEIAMGRVLSVVPN-KGLTISFP---FGKVGKVSL--FHVSD---SYSEAL- 1273

Query: 1312 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1371
              L  +   + V+C VL     V     + LSLR      SS  + +  + V+ P   + 
Sbjct: 1274 --LEDFFPQKIVRCYVLSTEHHV-----LTLSLR------SSRTNRETKSKVEDP--EIN 1318

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIG 1426
             I+D+    +++GYVK+V S G  + L   +      S++S      PEKE      P G
Sbjct: 1319 SIQDVKEGQLLRGYVKSVLSHGVLVELGPSVVGLAQYSHVSQ--CRPPEKELYDSYLPKG 1376

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            KLV  +VL V P   +VE++L  SD+
Sbjct: 1377 KLVTAKVLRVNPERSQVELSLLPSDT 1402


>gi|410976033|ref|XP_003994430.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Felis catus]
          Length = 1871

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 409/1489 (27%), Positives = 683/1489 (45%), Gaps = 187/1489 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   +K   K KK + +  E    
Sbjct: 5    FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKRKKSQKGPAKTKKLKIEKRENSKS 64

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++++++  GM++ G V EVNE +LV+ LP GL+G  +  + 
Sbjct: 65   IREKF------------EILSIESLCEGMRILGCVXEVNELELVVSLPNGLKGFVQVTEI 112

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      +E  A E+ L     LP +F  G LV C+V  +     E GK+ + LSL   
Sbjct: 113  CDAYTKKLSEQVAQEEPLKDLARLPELFSPGMLVRCVVSSVGFT--EGGKKSVKLSLNPK 170

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G ++
Sbjct: 171  NVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGARAFLPLQKAQEYIRQKNKGAEM 230

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  V+  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 231  KVGHYLNCVIEEVKGNGGVVGLSIGHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTP 290

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
            +G++L+FL++FTG VD  HL      T + N     + V A +L V P +RAV L+L P 
Sbjct: 291  HGLILNFLSFFTGLVDFMHLDPKKAGTYFSN-----QTVRACVLCVHPRTRAVRLSLRPI 345

Query: 395  LLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
             L       R    H+  G + +   V       G    +    +   AY  +S +++ +
Sbjct: 346  FLQPGRSLTRLSCQHL--GAVLEDVPVQSFSSKAGATFRLKDGAL---AYARLSHLSDSK 400

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKG V+ +
Sbjct: 401  NVFNAEAFKPGNTHKCRIIDYSQMDELALLSLRTSVIEAQYLRYHDIKPGALVKGTVLTI 460

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
              +G +V+    ++ L P  H+++  I  P KK+ +G E+  RVL    ++K++ +T KK
Sbjct: 461  KPYGMLVKVGEQIRGLVPPIHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKK 520

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TL++SKL  ++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P 
Sbjct: 521  TLIESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPE 580

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR------VSEDDLVKLGSLVSGVVDV 679
             +++ GQVVK  +++  P+  R+ LSF +   P R        +   V +G LV   V  
Sbjct: 581  RVFYTGQVVKVAVLNCEPSKERMLLSFKLLGDPKREHTGHSQKKRRAVSVGQLVDVKVLE 640

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+        +P  HL+DH+ +  ++   ++ G    ++L L     ++LL
Sbjct: 641  KTKDGLEVAVLPHNVP-AFLPIPHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEGHVLL 699

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP++   D 
Sbjct: 700  CRKPALVSTVEGGQDPKSFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDK 759

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEK-- 852
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +          LEE+  
Sbjct: 760  FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQG 819

Query: 853  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQL 909
            +  L SS+ +   ++ +   I G V++ +V E  + G VV F E   V G +   + +  
Sbjct: 820  VRSLMSSR-DSVLIQTLAEMIPGMVLDLEVQEVLEDGSVV-FSE-GPVPGLVLRASRYHR 876

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
            AG  VE G   +A IL++   +  V +SL    +        NR+A+K K+  E      
Sbjct: 877  AGQEVEPGQKKKAVILNIDMLKLEVHVSLCHDLV--------NRKAKKLKKGSE------ 922

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
             HQ   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+   
Sbjct: 923  -HQ---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTT 978

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYDVGSLVQA 1069
                T    LL ++  +   T    R                   A KK +  +G +V  
Sbjct: 979  EPGVTG--FLLAVEGPATKRTVRQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTG 1036

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1129
             +  IKP  + +    G  G IH + + DD   V  +  +  K+G+TVTAR+I      D
Sbjct: 1037 TVKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKTVTARVIGGR---D 1092

Query: 1130 MKK-SFL-----------WELSIKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV 1171
            MK   FL            ELS++PS L     T     S    E+      GQ V  ++
Sbjct: 1093 MKTFKFLPISHPRFIRTIPELSVRPSELEKDGCTALNTHSVSPLEKIKQYQAGQTVICFL 1152

Query: 1172 --YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1229
              Y V  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+  +  K  
Sbjct: 1153 KKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAF 1212

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            L L L             I    ++    +G++  GR+ K+ +   GL V          
Sbjct: 1213 LCLSL-------------IGPHKLE----KGEVAMGRVVKV-TPKEGLTVSFP------- 1247

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
             F ++  + +      Y E    PL  +   + V+C VL  +  V     + LSLRS   
Sbjct: 1248 -FGKMGTVSIFHVSDSYSEM---PLEDFIPQKVVRCYVLSATDHV-----LTLSLRS--- 1295

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
              S TN    S   D     +  I+D+    +++GYVK+V   G    L   +   V L+
Sbjct: 1296 --SRTNPETKSKITDA---EINSIQDIQEGQLLRGYVKSVQPHGVLFGLGPSV---VGLA 1347

Query: 1410 NLSDGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                    SP K+       P GKL+  +VLS+      VE++    D+
Sbjct: 1348 QYPHVSQYSPSKKALYNRYLPEGKLLTAKVLSLNRQKNLVELSFLPGDT 1396



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 102/246 (41%), Gaps = 35/246 (14%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K+F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1183 FKVLKHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKG 1226

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P E L + F  G  G + I  V+D  S   E    +F   + V   +++
Sbjct: 1227 EVAMGRVVKVTPKEGLTVSFPFGKMGTVSIFHVSDSYS---EMPLEDFIPQKVVRCYVLS 1283

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             ++        +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1284 ATD-------HVLTLSLRSSR-TNPETKSKITDAEINSIQDIQEGQLLRGYVKSVQPHGV 1335

Query: 1180 LLTISRHLK--AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            L  +   +   AQ +   S Y PS+   + R    GK +T  VLS+N++K L+ L   P 
Sbjct: 1336 LFGLGPSVVGLAQ-YPHVSQYSPSKKALYNRYLPEGKLLTAKVLSLNRQKNLVELSFLPG 1394

Query: 1238 QDGISD 1243
              G  D
Sbjct: 1395 DTGKPD 1400


>gi|345792763|ref|XP_535003.3| PREDICTED: protein RRP5 homolog [Canis lupus familiaris]
          Length = 1870

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 410/1490 (27%), Positives = 686/1490 (46%), Gaps = 189/1490 (12%)

Query: 54   FPRGGG---HSLTQR-----ERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            FPRGG    H L +      E+D +  ++  E E+ +R   +K   K KK + +  E+  
Sbjct: 5    FPRGGTRKTHKLEKAFQQSVEQDNLF-DISIEEESTKRKKSQKGPAKTKKLKIEKRESSK 63

Query: 106  DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
             +   F              ++++++  GM++ G V EV+E +LVI LP GL+G  +A +
Sbjct: 64   SVREKF------------EVLSVESLREGMRILGCVKEVHELELVISLPNGLQGFVQATE 111

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     L  +F  G LV C+V  +     E GK+ + LSL  
Sbjct: 112  ICDAYTEQLNEQVAQEEPLKDLVCLSELFSPGMLVRCVVSSVGIT--ESGKKSVKLSLNP 169

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 170  KNVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 229

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +     VV LS  P  VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 230  LKVGQYLNCIIEEVKGNGGVVGLSIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVT 289

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L+FLT+F+G VD  HL      T + N     + V A +L V P +RAV L+L P
Sbjct: 290  PVGLTLNFLTFFSGLVDFMHLDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRP 344

Query: 394  YLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
              L       R    H+  G + D   V       G    +    +   AY  +S +++ 
Sbjct: 345  IFLQPGRSLTRLSCQHL--GAVLDDVPVQSFFSKAGATFRLKDGAL---AYARLSHLSDS 399

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
            +     + YK G+  + RI+ +  ++ +    L+ S  E   F + D+KPG +VKG V+ 
Sbjct: 400  KNIFNAEAYKPGNIHKCRIIDYSQMDEMVLLSLRPSIIESQYFRYHDIKPGALVKGTVLT 459

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHK 566
            ++ +G +V+    ++ L P  H+++  I  P KK+ +G E+  RVL    ++K++ +T K
Sbjct: 460  IEPYGMLVKVGEQIRGLIPPMHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK 519

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
            KTL++SKL  ++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P
Sbjct: 520  KTLIESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDP 579

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR------VSEDDLVKLGSLVSGVVD 678
              +++ GQVVK  +++  P+  R+ LSF +   P +        +   + +G LV   V 
Sbjct: 580  ERVFYTGQVVKVVVLNCEPSKERMLLSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVL 639

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
              T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L      +L
Sbjct: 640  EKTKDGLEVSVLPHNIP-AFLPTPHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVL 698

Query: 739  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L  K +L+++ +  Q P + + IHP  ++ G+V +I + G FV+F   L+G AP++   D
Sbjct: 699  LCRKPALVSTVEGGQDPKNFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSD 758

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKI 853
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +          LEE+ 
Sbjct: 759  KFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQ 818

Query: 854  AMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQL 909
             +     +  S L + +     G V++ +V E  + G VV F E   V G +   + +  
Sbjct: 819  GVRSLMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVV-FSE-GPVSGLVLRASKYHR 876

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
            AG  VE G   +  IL+V   +  V +SL    +        NR+ +K K+  E      
Sbjct: 877  AGQEVEPGQKKKVVILNVDMLKLEVHVSLCHDLV--------NRKPKKLKKGSE------ 922

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
             HQ   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+   
Sbjct: 923  -HQ---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTT 978

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYDVGSLVQA 1069
                T    LL ++  +   T    R                   A KK +  +G +V  
Sbjct: 979  EPGMTG--FLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTG 1036

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1129
             +  IKP  + +    G  G IH + + DD   V  +  +  K+G+TVTAR+I      D
Sbjct: 1037 TVKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGRTVTARVIGGR---D 1092

Query: 1130 MKK-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV 1171
            MK   FL            ELS++PS L       ++   S  L +      GQ +  ++
Sbjct: 1093 MKTFKFLPISHPRFIRTIPELSVRPSELEKDGCTALNTHSSSHLEKIKQYQAGQTLICFL 1152

Query: 1172 --YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1229
              Y V  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+  +  K  
Sbjct: 1153 KKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAF 1212

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            L L L             I    ++    +G++  GR+ K+ +   GL V          
Sbjct: 1213 LCLSL-------------IGPHKLE----KGEVAMGRVVKV-TPKEGLTVSFP------- 1247

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV-ELSLRSSL 1348
             F ++  + V      Y E    PL  +   + V+C VL        T HV  LSLRS  
Sbjct: 1248 -FGKIGKVSVFHVSDSYSE---TPLEDFVPQKIVRCYVLS------ATGHVLTLSLRS-- 1295

Query: 1349 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1408
               S TN    S   D     +  I+D+    +++GYVK+V   G    L   +   V  
Sbjct: 1296 ---SRTNPETKSKITDP---EINSIQDIQEGQLLRGYVKSVQPHGVLFGLGPSVVGLVQY 1349

Query: 1409 SNLSDGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
             ++S     SP K+       P GKL+  +VLS++     VE++   +D+
Sbjct: 1350 PHVSQ---YSPSKKTLYNRYLPEGKLLTAKVLSLKCQKNLVELSFLPNDT 1396



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 33/245 (13%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K+F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1183 FKVLKHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKG 1226

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P E L + F  G  G++ +  V+D  S   E    +F   + V   +++
Sbjct: 1227 EVAMGRVVKVTPKEGLTVSFPFGKIGKVSVFHVSDSYS---ETPLEDFVPQKIVRCYVLS 1283

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1284 ATG-------HVLTLSLRSSR-TNPETKSKITDPEINSIQDIQEGQLLRGYVKSVQPHGV 1335

Query: 1180 LLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            L  +   +   + +   S Y PS+   + R    GK +T  VLS+  +K L+ L   P  
Sbjct: 1336 LFGLGPSVVGLVQYPHVSQYSPSKKTLYNRYLPEGKLLTAKVLSLKCQKNLVELSFLPND 1395

Query: 1239 DGISD 1243
             G  D
Sbjct: 1396 TGKPD 1400


>gi|74190944|dbj|BAE28246.1| unnamed protein product [Mus musculus]
          Length = 1414

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 408/1493 (27%), Positives = 685/1493 (45%), Gaps = 183/1493 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-EVDAEFEA------VERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+      E D  F+       ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTAEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++  M+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPDMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF +      +D            V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
             T   L+L ++  +          ++ET   K                    ++KK+ S 
Sbjct: 987  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
             +G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103

Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRV 1167
            I     K++K  P     F   + ELS++PS L  S       S+   E+      GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
              G+V    L +         Y E    PL  +   + V+C +L  +  V     + LSL
Sbjct: 1265 KIGKVSMFHLSD--------SYSEA---PLEDFCPQKIVRCYILSTAHRV-----LALSL 1308

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            RSS     + N       ++ P   +  IED+     ++GYVK V      I L   +  
Sbjct: 1309 RSSRTNRETKNR------IEDP--EINSIEDVKEGQHLRGYVKCVLPSSVIIGLGPSVLG 1360

Query: 1405 KVLLSNLSDGYVESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                S++S+     PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1361 LAKYSHVSECV--PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411


>gi|301756220|ref|XP_002913967.1| PREDICTED: protein RRP5 homolog [Ailuropoda melanoleuca]
          Length = 1907

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 409/1491 (27%), Positives = 677/1491 (45%), Gaps = 191/1491 (12%)

Query: 54   FPRGGGH-------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG         +L Q    +   ++  E E+ +R   +K   K KK + +  E+   
Sbjct: 39   FPRGGTRKTHKSKKALQQSVEQDNLFDISTEEESTKRKKSQKGSAKTKKLKIEKRESSKS 98

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++++++  GM++ G V EVNE +LVI LP GLRG  +  + 
Sbjct: 99   IREKF------------EILSIESLCEGMRILGCVKEVNEIELVISLPNGLRGFVQVTEI 146

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  +   ++  GK+ + LSL   
Sbjct: 147  CDAYTKKLNEQVAQEEPLKDLVSLPELFSPGMLVRCVVSSVGITER--GKKSVKLSLNPK 204

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +
Sbjct: 205  NVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKL 264

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 265  KVGQYLNCIIEEVKGNGGVVGLSVVHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTP 324

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FL++FTG VD  HL      T + N     + V A +L V P +RAV L+L P 
Sbjct: 325  VGLTLNFLSFFTGLVDFMHLDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPV 379

Query: 395  LLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
             L       R    H+  G + D+  V       G    +    +   AY  ++ +A+ +
Sbjct: 380  FLQPGRSLTRLSCQHL--GAVLDEVPVQNFFSKAGATFRLKDGAL---AYARLTHLADSK 434

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + R++ +  ++ LA   L+ S  E     + D+KPG +V+G V+ +
Sbjct: 435  NVFNAEAFKPGNTHKCRVIDYSQMDELALLSLRTSVIEAQYLKYHDIKPGALVEGTVLTI 494

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
             S+G +V+    ++ L P  H+++  +  P KK+++G E+  RVL    ++K++ +T KK
Sbjct: 495  KSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKK 554

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TL++SKL  ++ YA+A   L THG+I +++  GC V+FYN VQG  P+ EL  +   +P 
Sbjct: 555  TLIESKLPAVTCYADAKPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPE 614

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR------VSEDDLVKLGSLVSGVVDV 679
             +++ GQVVK  +++  P+  R+ LSF +   P +        E   V LG LV   V  
Sbjct: 615  RVFYAGQVVKVVVLNCEPSKERMLLSFRLLGDPKKEHPGKSQKERRTVSLGQLVDVKVLE 674

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     ++LL
Sbjct: 675  KTKDGLEVAVLPHNIP-AFLPTPHLSDHVANGPLLYHWLRAGDTLHKVLCLSQSERHVLL 733

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   + IHP  ++ G+V +I + G FV+F   L+G AP++   D 
Sbjct: 734  CRKPALVSTVEGGQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDK 793

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIA 854
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +          LEE+  
Sbjct: 794  FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQG 853

Query: 855  MLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLA 910
            +     +  S L + +     G V++ +V E  + G  V+F E   V G +   + +  A
Sbjct: 854  VRSLMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDG-SVAFSE-GPVPGLVLRASKYHRA 911

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
            G  VE G   +  IL+V   +  V +SL    +        NR+A+K ++  E       
Sbjct: 912  GQEVEPGQKKKVVILNVDMLKLEVHVSLCHDLV--------NRKAKKLRKGSE------- 956

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029
                 AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+    
Sbjct: 957  ---YQAIVQHLEESFAVASLVESGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTE 1013

Query: 1030 SSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYDVGSLVQAE 1070
               T    LL ++  +   T    R                   A KK +  +G +V   
Sbjct: 1014 PGVTG--FLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGT 1071

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            +  IKP  + +    G  G IH + + DD   V  +  +  K+G+TVTAR+I      DM
Sbjct: 1072 VKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKTVTARVIGGR---DM 1127

Query: 1131 KK-SFL-----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV------- 1171
            K   FL            ELSI+PS L   E   +       VS  +++  Y        
Sbjct: 1128 KTFKFLPISHPRFIRTIPELSIRPSEL---EKDGRTALNTHSVSPLEKIKQYQAGQTLIC 1184

Query: 1172 ----YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
                Y V  +W  + I+  ++ ++ +L  +     L+   ++F IG+A+   V+  +  K
Sbjct: 1185 FLKKYNVVKKWLEVEIAPDIRGRIPLLLMSLSFKVLKHPDKKFRIGQALKATVVGPDSSK 1244

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L L             I    ++    +G++  GR+ K+ +   GL V       G
Sbjct: 1245 AFLCLSL-------------IGPHKLE----KGEVAMGRVMKV-TPKEGLTVSFPFGKIG 1286

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
            RV         VSD    Y E    PL  +   + V+C VL ++  V     + LSLRS 
Sbjct: 1287 RVSI-----FHVSD---SYSE---TPLEDFVPQKVVRCYVLSVTGHV-----LTLSLRS- 1329

Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
                S TN    S   D     +  I+D+    +++GYVK V   G    L   +   V 
Sbjct: 1330 ----SRTNPETKSKITDP---EINSIQDVQEGQLLRGYVKCVQPHGVLFGLGPSV---VG 1379

Query: 1408 LSNLSDGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            L+        SP K+       P GKL+  +VL +      VE++   SD+
Sbjct: 1380 LARYPHVSQYSPSKKALYNRYLPEGKLLTAKVLRLNRQKNLVELSFLPSDT 1430


>gi|281352084|gb|EFB27668.1| hypothetical protein PANDA_001797 [Ailuropoda melanoleuca]
          Length = 1874

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 409/1491 (27%), Positives = 677/1491 (45%), Gaps = 191/1491 (12%)

Query: 54   FPRGGGH-------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG         +L Q    +   ++  E E+ +R   +K   K KK + +  E+   
Sbjct: 7    FPRGGTRKTHKSKKALQQSVEQDNLFDISTEEESTKRKKSQKGSAKTKKLKIEKRESSKS 66

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++++++  GM++ G V EVNE +LVI LP GLRG  +  + 
Sbjct: 67   IREKF------------EILSIESLCEGMRILGCVKEVNEIELVISLPNGLRGFVQVTEI 114

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  +   ++  GK+ + LSL   
Sbjct: 115  CDAYTKKLNEQVAQEEPLKDLVSLPELFSPGMLVRCVVSSVGITER--GKKSVKLSLNPK 172

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +
Sbjct: 173  NVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKL 232

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 233  KVGQYLNCIIEEVKGNGGVVGLSVVHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTP 292

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FL++FTG VD  HL      T + N     + V A +L V P +RAV L+L P 
Sbjct: 293  VGLTLNFLSFFTGLVDFMHLDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPV 347

Query: 395  LLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
             L       R    H+  G + D+  V       G    +    +   AY  ++ +A+ +
Sbjct: 348  FLQPGRSLTRLSCQHL--GAVLDEVPVQNFFSKAGATFRLKDGAL---AYARLTHLADSK 402

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + R++ +  ++ LA   L+ S  E     + D+KPG +V+G V+ +
Sbjct: 403  NVFNAEAFKPGNTHKCRVIDYSQMDELALLSLRTSVIEAQYLKYHDIKPGALVEGTVLTI 462

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
             S+G +V+    ++ L P  H+++  +  P KK+++G E+  RVL    ++K++ +T KK
Sbjct: 463  KSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKK 522

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TL++SKL  ++ YA+A   L THG+I +++  GC V+FYN VQG  P+ EL  +   +P 
Sbjct: 523  TLIESKLPAVTCYADAKPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPE 582

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR------VSEDDLVKLGSLVSGVVDV 679
             +++ GQVVK  +++  P+  R+ LSF +   P +        E   V LG LV   V  
Sbjct: 583  RVFYAGQVVKVVVLNCEPSKERMLLSFRLLGDPKKEHPGKSQKERRTVSLGQLVDVKVLE 642

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     ++LL
Sbjct: 643  KTKDGLEVAVLPHNIP-AFLPTPHLSDHVANGPLLYHWLRAGDTLHKVLCLSQSERHVLL 701

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   + IHP  ++ G+V +I + G FV+F   L+G AP++   D 
Sbjct: 702  CRKPALVSTVEGGQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDK 761

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIA 854
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +          LEE+  
Sbjct: 762  FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQG 821

Query: 855  MLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLA 910
            +     +  S L + +     G V++ +V E  + G  V+F E   V G +   + +  A
Sbjct: 822  VRSLMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDG-SVAFSE-GPVPGLVLRASKYHRA 879

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
            G  VE G   +  IL+V   +  V +SL    +        NR+A+K ++  E       
Sbjct: 880  GQEVEPGQKKKVVILNVDMLKLEVHVSLCHDLV--------NRKAKKLRKGSE------- 924

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029
                 AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+    
Sbjct: 925  ---YQAIVQHLEESFAVASLVESGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTE 981

Query: 1030 SSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYDVGSLVQAE 1070
               T    LL ++  +   T    R                   A KK +  +G +V   
Sbjct: 982  PGVTG--FLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGT 1039

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            +  IKP  + +    G  G IH + + DD   V  +  +  K+G+TVTAR+I      DM
Sbjct: 1040 VKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKTVTARVIGGR---DM 1095

Query: 1131 KK-SFL-----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV------- 1171
            K   FL            ELSI+PS L   E   +       VS  +++  Y        
Sbjct: 1096 KTFKFLPISHPRFIRTIPELSIRPSEL---EKDGRTALNTHSVSPLEKIKQYQAGQTLIC 1152

Query: 1172 ----YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
                Y V  +W  + I+  ++ ++ +L  +     L+   ++F IG+A+   V+  +  K
Sbjct: 1153 FLKKYNVVKKWLEVEIAPDIRGRIPLLLMSLSFKVLKHPDKKFRIGQALKATVVGPDSSK 1212

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L L             I    ++    +G++  GR+ K+ +   GL V       G
Sbjct: 1213 AFLCLSL-------------IGPHKLE----KGEVAMGRVMKV-TPKEGLTVSFPFGKIG 1254

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
            RV         VSD    Y E    PL  +   + V+C VL ++  V     + LSLRS 
Sbjct: 1255 RVSI-----FHVSD---SYSE---TPLEDFVPQKVVRCYVLSVTGHV-----LTLSLRS- 1297

Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
                S TN    S   D     +  I+D+    +++GYVK V   G    L   +   V 
Sbjct: 1298 ----SRTNPETKSKITDP---EINSIQDVQEGQLLRGYVKCVQPHGVLFGLGPSV---VG 1347

Query: 1408 LSNLSDGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            L+        SP K+       P GKL+  +VL +      VE++   SD+
Sbjct: 1348 LARYPHVSQYSPSKKALYNRYLPEGKLLTAKVLRLNRQKNLVELSFLPSDT 1398


>gi|326923909|ref|XP_003208175.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Meleagris
            gallopavo]
          Length = 2041

 Score =  412 bits (1058), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 374/1404 (26%), Positives = 651/1404 (46%), Gaps = 152/1404 (10%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI---EANE 179
            +T++ I  GM L G + EV   +LVI LP GL G   + + +DA   +L+ ++   E  E
Sbjct: 281  LTIQEICEGMLLLGCIKEVTFFELVISLPNGLTGFVPVTQISDAYSELLNEQVTQGELLE 340

Query: 180  D-NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 238
            D N L  ++  G LV C+V  ++  K   G+R I LS+    + KGL+   +  GM+L+ 
Sbjct: 341  DLNSLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKNVNKGLNASALTSGMLLSG 398

Query: 239  YVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKV 293
            +V+S+EDHGY++  G+     FLP         A   G D+K G  L  ++  +    +V
Sbjct: 399  FVRSVEDHGYLIDIGVRGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCLIEEVKNEGRV 458

Query: 294  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            V LS+D   V+  +  + +  ++  L+PG++V  +VQ +   G+ L+FL+ FTG VD  H
Sbjct: 459  VRLSADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGISLTFLSSFTGIVDFMH 518

Query: 354  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
            +     T     +Y+ ++ V A IL   PTS+ V LTL    L     P+ +   ++G +
Sbjct: 519  VDPEKST-----NYSPNQVVKACILSTHPTSKVVHLTLRQAFLCPGGSPNQLSNDRIGAV 573

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
             ++S V    +  G + ++    +   A+  +  +++         +K G   + RI+ +
Sbjct: 574  VEESTVKAFYKQFGAVFELDDGML---AFARLKHLSKTRKSFKPAAFKAGCKHKCRIIDY 630

Query: 471  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
              ++ +    LK    E     + D+  G V++GKV+++   G  V+   G+K L P  H
Sbjct: 631  SLMDEMCIVSLKHQIIEARFLRYQDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMH 690

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
            +++  + +P KK+ VG E+  RVL    + K++ +T KKTLV+SKL +LSSY +A   LI
Sbjct: 691  LADVILKQPEKKYNVGDEVRCRVLECNPEEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLI 750

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            THG++    + GC V+FYN V+G  P++EL  +P   P  ++H GQVVK  ++   P   
Sbjct: 751  THGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQE 810

Query: 649  RINLSFMMKPTRVSEDDL-----------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK- 696
            R+ LSF +    V E               ++G +V   V     N + V ++  G    
Sbjct: 811  RLLLSFRLSSKPVPEGRTECTPKKKQQVKYQIGEMVDVKVLKKNENGLEVSILEDGDDVI 870

Query: 697  GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPS 754
              +PT HL+D + ++ ++   ++ G    +++ L ++   ++L  K ++I++ Q  Q+  
Sbjct: 871  AWLPTGHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVR 930

Query: 755  DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
              S I P  ++ GYV  ++  G FV F   +TG AP+    D    D    + VGQ+V +
Sbjct: 931  SFSEIQPGVLLTGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIA 990

Query: 815  NILDVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             ++ ++ E  R+ L+LK S CSS D+     S + ++F   E+I  L   + +G   + +
Sbjct: 991  KVMSIDEEKQRVLLNLKVSECSSGDSAAESFSLLNQYFKEMEEIKNLLRRRESGLA-QCL 1049

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILD 926
               + G  ++  V +  + G   +    S V G+    TH+ L G  V  G   +  +L 
Sbjct: 1050 SELVPGKELQLVVQDVMEDG--SALFSGSCVRGWTVTATHYHLGGKKVVPGEKAKGLVLH 1107

Query: 927  VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIVKENY 985
            V      V +SL+   +                 K+E SK  L  +    AIV+ + E +
Sbjct: 1108 VDAITSKVYVSLREELL-----------------KKEPSKXRLTKNSQHPAIVQHIAEEF 1150

Query: 986  LVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS----------TA 1034
             ++SL +          S +N T +F  ++   GQ + AT+  + ++           T 
Sbjct: 1151 AIVSLLDSGRLAAVPIASHFNDTFRFDSEKMKVGQRIYATLKTVKANDLGVVLAVQDPTK 1210

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
                +  +  SET    +  A  K S  +G +V   +  +KP  + +       G IH +
Sbjct: 1211 KNAFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHAS 1270

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPSM 1144
            ++ D+        ++  K GQ VTAR+I   +           P   +S + ELSI+P  
Sbjct: 1271 QILDEVPIYSFPTYT-LKAGQKVTARVIGGRDVNTHRYLPITHPHFTRS-VPELSIRP-- 1326

Query: 1145 LTVSEIGSK---LLFEECD----VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1195
               SEI  K   +  + C+     ++GQ VT +V  Y +   W  + ++  ++ ++  L 
Sbjct: 1327 ---SEIEGKVETMRDDTCEKLGPYNVGQTVTCFVRKYNILKNWLEVEVAPDVRGRVPRLL 1383

Query: 1196 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
             +     L+  ++ F  G+A++  V   +  +  L L L   Q                 
Sbjct: 1384 LSLNTKVLKHPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS---------------- 1427

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
             +  G I  G ++K++  + GL + +     G+V    L +         Y E    PLS
Sbjct: 1428 -LEPGTITVGMVAKMIPHI-GLTITLPGGKTGKVSIFHLSD--------KYTES---PLS 1474

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
             +  G+ V+C +L           ++LSLR S   ++  NSS +          +  I+D
Sbjct: 1475 DFKIGKVVRCYILS-----NENGKIQLSLRQS--RLNPKNSSKVE------DAEITSIKD 1521

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGR 1432
            +    +++GYVK+VT  G F  LS  L  ++L  N+S  +V+     EK  P GKL+  +
Sbjct: 1522 VKKGQLLRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAK 1581

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTAS 1456
            VL V      VE++L   D+   S
Sbjct: 1582 VLDVNKNENHVELSLLPEDTEMPS 1605


>gi|348680504|gb|EGZ20320.1| hypothetical protein PHYSODRAFT_490560 [Phytophthora sojae]
          Length = 1892

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 399/1480 (26%), Positives = 685/1480 (46%), Gaps = 201/1480 (13%)

Query: 126  ITLKNISAGMKLWGVVAEVNE-KDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLP 184
            ++ K +  GM L G V +V + +DL+I LP  L G    A+  D                
Sbjct: 79   LSFKTLRKGMLLLGCVRQVTDGQDLMISLPNKLNGTVALAECSDD--------------- 123

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
            +IF VGQ V C+VL      K   +++I LSLR SLL+  LS+ ++ +G  L A V S+E
Sbjct: 124  SIFKVGQFVPCVVLATSKTDK---RKQIQLSLRTSLLHAELSVASLTKGASLHATVSSVE 180

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 304
            DHG I++ G+     F+PR  LA      V  G  L   V S++       ++ D  TV 
Sbjct: 181  DHGAIVNLGIRGVHAFVPRKELAA----PVLKGQHLLVSVLSMNAHTNTATVTIDRSTVV 236

Query: 305  KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN-W 363
            K VT+     ++  LVPGM+++ RV+ +LENG+ ++FLT+FT TV+  H+  + P    W
Sbjct: 237  KAVTRG-DSFTLKQLVPGMLLNVRVEDVLENGLSVTFLTFFTATVEQNHM--SLPCERGW 293

Query: 364  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL 423
            +  + +  K  ARI+ +D  ++ + L++ P+++H + P S   VGDI +++ + R+D G+
Sbjct: 294  EESFRKGMKARARIMSIDYIAKQITLSIAPHVVHMQVPDSPYSVGDIIEEATIERIDAGV 353

Query: 424  GLLLDIPSTPVS------------------------TPAYVTISDVAEEEVRKLEKKYKE 459
            G+LL + S                             P YV IS+V+++ V KLEKKY  
Sbjct: 354  GMLLSLKSKTSQDEDVEMEDASEKKESTTNAKWKAFAPGYVHISNVSDKRVDKLEKKYTV 413

Query: 460  GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
            GS ++ R+LGF   + +     K SA    V  H D+ PG  V G +++V+S+G +++  
Sbjct: 414  GSSIKCRVLGFSPFDAVVNISCKESALSQTVLRHKDLAPGTKVSGIILSVESWGILMEIS 473

Query: 520  GGVKALCPLPHMSEFEIVKPGK---KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 574
             GV+ L    HM  F + K      K+KVG     RVL V  ++K+  +T K  L+ S+L
Sbjct: 474  EGVRGLVNPQHMPAFLLNKKANNNGKYKVGKVASARVLHVDLEAKKTFLTMKSGLLASEL 533

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVG 633
             +LSS+ EA   LI HG+ITKI ++G  V FYN V G  P + L    G E     Y +G
Sbjct: 534  PVLSSFEEAKMDLIAHGYITKIAEYGVIVTFYNNVYGLVPMAVLQ-QAGIENLEEAYVIG 592

Query: 634  QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-------LGSLVSGVVDVVTPNAVV 686
            QVVK R+    P+ +R+ LSF     +               +G  ++  V +    A  
Sbjct: 593  QVVKARVTRCDPSKKRLMLSFDTTSNKSGNAPTAAPETAAELVGKTITN-VKITDVEATC 651

Query: 687  VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ----LLVLDNESSNLL-LSA 741
              V      +G +P   L D     +++  ++K     D     LLV+  ES  +L LS 
Sbjct: 652  FRVQTADGMEGVLPFVQLTDFPRQTSLVDEIVKGFSAGDMISEPLLVVAQESDGVLTLSK 711

Query: 742  KYSLINSAQQ---LPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSKAVDG 797
            K  L+  A +   LP     +  N+V+ GYV ++ +  G FV+FL  L   AP+    + 
Sbjct: 712  KPLLLEFASRSAILPRTFGDVQENAVLIGYVTSVNVAKGVFVKFLNNLVAVAPKGFLKEE 771

Query: 798  QRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ-EHFLLEEKIAM 855
              +++ +  + +G++V  ++  V+    +  +  KQ        +F+Q  +   + ++A 
Sbjct: 772  FVSEIEEGMFEIGETVTCSVESVDKAKKQFVVGFKQ-------GNFVQVTNATNKARLAY 824

Query: 856  LQSSKHNGSELKWVEGFIIGSVIEGKVHESN-----DFGVVVSFEEHSD-VYGFITHHQL 909
             Q+     + ++        S   GK  ++       +G V + E+  + V   +     
Sbjct: 825  FQAYLREQAAVRSAAAAKKASFALGKTEKAEFVGVRPYGAVFALEKDEETVTVLVPSVTE 884

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
                 + G  ++  + D        D S K V+     E+     +++ +++++  K  G
Sbjct: 885  KNNEWDEGDSVKLLLTD-------YDFS-KNVYYAAADESLVKSGSKRSRKQKQRVKAGG 936

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHS----IGYASVSDY--NTQKFPQKQFLNGQS--- 1020
              +    +     E Y V+S P+  ++     G   + D+   +Q   Q     G S   
Sbjct: 937  KIEAAKVVAVSPTEKYAVVSFPDAQNADLLHFGVVELCDFWCPSQTSGQLGIEVGASVEC 996

Query: 1021 -VIATVMALPSSSTAGRLLLLL-----KAISETETSSSKRAKKKSSYDVGSL-------- 1066
             V+ + +   S+ST    L+LL     K +S+ +  + K A K   Y    L        
Sbjct: 997  RVVQSTLKSGSNSTPFDDLVLLALAEEKLVSKAKKDTRKSASKLPKYSPNDLTLGNTLTG 1056

Query: 1067 VQAEITEIKPLELRLKFG--IG-FHGRIHITEVND-DKSNVVENLFSNFKIGQTVTARII 1122
            V A I+E   +E+R++ G  +G     + I +V+  D+     + F  + +   VT R+I
Sbjct: 1057 VIAGISE-NSMEIRVETGKKVGKVRATVSIVDVDGIDEKYGHAHPFDKYSVNAAVTGRVI 1115

Query: 1123 AKSN------KPDMKKSFLWELSIKPSMLT--------VSEI-------------GSKLL 1155
            A +       KP  K++     +I+ S+ T        V+++             G  LL
Sbjct: 1116 AVTAKGANKLKPVSKENPATFHAIQLSLRTEDVAGDEKVTDVQRFVRPDWLEGSAGRALL 1175

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E      G  V G V     +   + +S ++   L  ++ + +   ++ FQ +F +GK 
Sbjct: 1176 KE------GNSVDGIVSDQGADQLTIKLSSNVTGTLSCVEVSEDVEVVRAFQDKFPVGKR 1229

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV- 1274
            V   VL ++ EKK + L L           +  S+   +  +  G I+ G ISK  S + 
Sbjct: 1230 VKCFVLQVDDEKKTVDLSL-----------IHSSSAQDKAVVKPGSIINGVISKKKSAIR 1278

Query: 1275 -GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1333
               ++VQ+G H +GRV        CV++ L+ ++    + L  +  G+ V+C VL  +  
Sbjct: 1279 PPSIMVQLGAHTFGRV--------CVTELLAKWENNMLE-LPQFAAGKVVRCVVLSNNNN 1329

Query: 1334 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1393
                 H++LSLR   D ++  N  + +     P +    + DL P +     V + ++ G
Sbjct: 1330 -----HIDLSLRK--DALA--NPKEYAKKTSKPAER--GVGDLVPAV-----VASTSTTG 1373

Query: 1394 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453
            CF+ + R   A+V+L +LSD +V+ P++ FP GKLVAGRV   +   + +E++LK   S 
Sbjct: 1374 CFVRVDRHTTARVMLRDLSDDFVKDPQEHFPTGKLVAGRV--TKKSDRGLELSLKA--SV 1429

Query: 1454 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             +    +   ++L  G  V G + +V++YG+F+ IE + +
Sbjct: 1430 VSEDVSVFKWNDLKEGLTVKGTVTKVQTYGVFVRIEKSTI 1469



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 124/289 (42%), Gaps = 45/289 (15%)

Query: 1052 SKRAKKKSSYDVGSLVQAEITE----IKPLELRLKFGIGFHGRIHITEV-NDDKSNVVEN 1106
            S  A+ K+    GS++   I++    I+P  + ++ G    GR+ +TE+    ++N++E 
Sbjct: 1251 SSSAQDKAVVKPGSIINGVISKKKSAIRPPSIMVQLGAHTFGRVCVTELLAKWENNMLE- 1309

Query: 1107 LFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1166
                F  G+ V   +++ +N          +LS++   L   +  +K   +  +  +G  
Sbjct: 1310 -LPQFAAGKVVRCVVLSNNNNH-------IDLSLRKDALANPKEYAKKTSKPAERGVGDL 1361

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
            V   V         + + RH  A++ + D       +++ Q  F  GK V G V    K 
Sbjct: 1362 VPAVVASTSTTGCFVRVDRHTTARVMLRD--LSDDFVKDPQEHFPTGKLVAGRV--TKKS 1417

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTF----IHEGDIVGGRISKILSGVGGLVVQI- 1281
             + L L L+            + ++++  F    + EG  V G ++K+ +   G+ V+I 
Sbjct: 1418 DRGLELSLK----------ASVVSEDVSVFKWNDLKEGLTVKGTVTKVQTY--GVFVRIE 1465

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
               + G  H +E+ +  V+ PL             + EG +VK KVL++
Sbjct: 1466 KSTISGLCHISEVADEKVTQPLDQI----------FSEGDYVKAKVLKV 1504


>gi|291404761|ref|XP_002718640.1| PREDICTED: programmed cell death 11 isoform 1 [Oryctolagus cuniculus]
          Length = 1875

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 404/1490 (27%), Positives = 681/1490 (45%), Gaps = 185/1490 (12%)

Query: 54   FPRGGGH---------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETV 104
            FPRGG           S  Q    +   ++  E E+ +R   +K   K KK + +  E  
Sbjct: 8    FPRGGTRKKSDHKSEKSFPQSVEQDNLFDISTEEESTKRKKSQKGPAKTKKLKSEERERS 67

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
              +   F              ++++++  GM++ G V EVNE +LVI LP GL+G  +  
Sbjct: 68   KSVREKF------------EILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVT 115

Query: 165  DALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 217
            +  D   +  NE    E+ L     LP +F  G LV C+V  L   +K  GKR + LSL 
Sbjct: 116  EICDAYTEKLNEQMTQEEPLKDLLRLPELFAPGMLVRCVVRSLAITEK--GKRSVKLSLN 173

Query: 218  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGI 272
               + K LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G 
Sbjct: 174  PKNVNKVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLPLQKAQEYIRQKNKGA 233

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
            ++K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +
Sbjct: 234  NLKVGQYLHCIIEEVKGDGGVVSLSVGHAEVSAAIASEEQSWTLNNLLPGLVVKAQVQKV 293

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
               G+ L+FL +FTG VD  HL      T + N     + V A IL V P ++ V L+L 
Sbjct: 294  TRFGLTLNFLKFFTGLVDFMHLDPKKVGTYFSN-----QAVRACILCVHPRTKVVRLSLR 348

Query: 393  PYLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
            P  L    P + +    +G + D   V       G    + +  +   AY  +S +++ +
Sbjct: 349  PIFLQPGRPLTRLSCQHLGAVLDDVPVQGFFIKAGATFSLKNGVL---AYARLSHLSDSK 405

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + RI+ +  L+ L    L+ S  E   F + D+KPG V+KG V+ +
Sbjct: 406  KVFKPEAFKPGNTHKCRIIDYSPLDELVLLSLRTSIIEAQYFRYHDIKPGAVIKGTVLTI 465

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
              +G +++    ++ L P  H+++  +  P KK+ +G EL  RVL    ++K++ +T KK
Sbjct: 466  KPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHIGEELKCRVLLCDPEAKKLIMTLKK 525

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TLV+SKL  ++ YA+A   L THG I +++ +GC V+FYN VQG  P+ EL      +P 
Sbjct: 526  TLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSAQYIPDPG 585

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM------KPTRVSEDDLVKLGSLVSGVVDV-- 679
            S+++ GQVVK  +++S P+  R+ LSF +      K     +      G  V  +VDV  
Sbjct: 586  SVFYTGQVVKVVVLNSEPSKERMLLSFKLLSDGEPKKEHAGQGQKKGRGVTVGQLVDVKV 645

Query: 680  --VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
               T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     +L
Sbjct: 646  LEKTKDGLEVAVLPHNIP-AFLPTSHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEKHL 704

Query: 738  LLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
             L  K +L+++ +  Q P + S IHP  ++ G+V +I + G FV+F   L+G AP++   
Sbjct: 705  FLCRKPALVSTVEGDQDPKNFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMS 764

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            D      S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      LL + +  
Sbjct: 765  DKFVTSPSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCMLGDVA-STSLLLLSQCLEE 823

Query: 856  LQS-----SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THH 907
            LQ      S  +   ++ +     G V++  V E  + G V+       V G +   + +
Sbjct: 824  LQGVRSLMSNRDSVLIQTLAKMTPGMVLDLMVQEVLEDGCVLF--SGGPVPGLVLKASKY 881

Query: 908  QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 967
              AG  VESG   +  IL+V   +  V +SL    +D        R+A+K K+  E    
Sbjct: 882  HRAGQEVESGQKKKVVILNVDMLKLEVHVSLLQNLVD--------RKAKKLKKGSE---- 929

Query: 968  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVM 1026
               HQ   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+ 
Sbjct: 930  ---HQ---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLK 983

Query: 1027 ALPSSSTAGRLLLLLKAISETETSSSKRAK------------------KKSSYDVGSLVQ 1068
                  T G LL +   +++     +++                    KK +  +G  V 
Sbjct: 984  TTEPGVT-GFLLAVEGPVAKRTMRQTRKDSEAVDEDEEVDPALAVGPIKKHALSIGDKVT 1042

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----K 1124
              +  +KP  + +    G  G IH +++ DD   V  +  +  K+G+TVTAR+I     K
Sbjct: 1043 GTVKSVKPTHVVVTLEDGITGCIHASQILDD-VPVGTSPTAKLKVGKTVTARVIGGRDVK 1101

Query: 1125 SNK--PDMKKSFLW---ELSIKPSML-----------TVSEIGSKLLFEECDVSIGQRVT 1168
            + K  P     F+    ELS++PS L           +VS +     ++      GQ VT
Sbjct: 1102 TFKFLPISHPRFIRTIPELSVRPSELEKDGHTALNTYSVSPVEKIRQYQ-----AGQTVT 1156

Query: 1169 GYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
             ++  Y V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+     
Sbjct: 1157 CFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKCPDKKFRVGQALKATVVGPVSS 1216

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K  L L L             I    ++    +G++  GR+ ++     GL V       
Sbjct: 1217 KAFLCLSL-------------IGPHKLE----KGEVAMGRVVEVTPN-KGLTVSFPFGKK 1258

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
            GRV         VSD    Y E    PL  +   + V+C VL     +     + LSLR 
Sbjct: 1259 GRVSI-----FHVSD---SYSE---TPLQDFVPQKIVRCYVLSTEEQM-----LTLSLR- 1301

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
                 SS  + +  + V+ P   ++ I+D+    +++GYV++V   G    L   +    
Sbjct: 1302 -----SSRTNPETKSKVEDP--EIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLA 1354

Query: 1407 LLSNLSDGYVESPE----KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               ++S  Y  S +    K  P GKL+  +VL +      VE++    D+
Sbjct: 1355 DYPHVSQ-YSPSEKDLYNKYLPEGKLLTAKVLRLNHRQDLVELSFLPCDT 1403


>gi|291404763|ref|XP_002718641.1| PREDICTED: programmed cell death 11 isoform 2 [Oryctolagus cuniculus]
          Length = 1860

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 404/1490 (27%), Positives = 681/1490 (45%), Gaps = 185/1490 (12%)

Query: 54   FPRGGGH---------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETV 104
            FPRGG           S  Q    +   ++  E E+ +R   +K   K KK + +  E  
Sbjct: 8    FPRGGTRKKSDHKSEKSFPQSVEQDNLFDISTEEESTKRKKSQKGPAKTKKLKSEERERS 67

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
              +   F              ++++++  GM++ G V EVNE +LVI LP GL+G  +  
Sbjct: 68   KSVREKF------------EILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVT 115

Query: 165  DALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 217
            +  D   +  NE    E+ L     LP +F  G LV C+V  L   +K  GKR + LSL 
Sbjct: 116  EICDAYTEKLNEQMTQEEPLKDLLRLPELFAPGMLVRCVVRSLAITEK--GKRSVKLSLN 173

Query: 218  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGI 272
               + K LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G 
Sbjct: 174  PKNVNKVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLPLQKAQEYIRQKNKGA 233

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
            ++K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +
Sbjct: 234  NLKVGQYLHCIIEEVKGDGGVVSLSVGHAEVSAAIASEEQSWTLNNLLPGLVVKAQVQKV 293

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
               G+ L+FL +FTG VD  HL      T + N     + V A IL V P ++ V L+L 
Sbjct: 294  TRFGLTLNFLKFFTGLVDFMHLDPKKVGTYFSN-----QAVRACILCVHPRTKVVRLSLR 348

Query: 393  PYLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
            P  L    P + +    +G + D   V       G    + +  +   AY  +S +++ +
Sbjct: 349  PIFLQPGRPLTRLSCQHLGAVLDDVPVQGFFIKAGATFSLKNGVL---AYARLSHLSDSK 405

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + RI+ +  L+ L    L+ S  E   F + D+KPG V+KG V+ +
Sbjct: 406  KVFKPEAFKPGNTHKCRIIDYSPLDELVLLSLRTSIIEAQYFRYHDIKPGAVIKGTVLTI 465

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
              +G +++    ++ L P  H+++  +  P KK+ +G EL  RVL    ++K++ +T KK
Sbjct: 466  KPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHIGEELKCRVLLCDPEAKKLIMTLKK 525

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TLV+SKL  ++ YA+A   L THG I +++ +GC V+FYN VQG  P+ EL      +P 
Sbjct: 526  TLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSAQYIPDPG 585

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM------KPTRVSEDDLVKLGSLVSGVVDV-- 679
            S+++ GQVVK  +++S P+  R+ LSF +      K     +      G  V  +VDV  
Sbjct: 586  SVFYTGQVVKVVVLNSEPSKERMLLSFKLLSDGEPKKEHAGQGQKKGRGVTVGQLVDVKV 645

Query: 680  --VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
               T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     +L
Sbjct: 646  LEKTKDGLEVAVLPHNIP-AFLPTSHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEKHL 704

Query: 738  LLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
             L  K +L+++ +  Q P + S IHP  ++ G+V +I + G FV+F   L+G AP++   
Sbjct: 705  FLCRKPALVSTVEGDQDPKNFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMS 764

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            D      S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      LL + +  
Sbjct: 765  DKFVTSPSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCMLGDVA-STSLLLLSQCLEE 823

Query: 856  LQS-----SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THH 907
            LQ      S  +   ++ +     G V++  V E  + G V+       V G +   + +
Sbjct: 824  LQGVRSLMSNRDSVLIQTLAKMTPGMVLDLMVQEVLEDGCVLF--SGGPVPGLVLKASKY 881

Query: 908  QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 967
              AG  VESG   +  IL+V   +  V +SL    +D        R+A+K K+  E    
Sbjct: 882  HRAGQEVESGQKKKVVILNVDMLKLEVHVSLLQNLVD--------RKAKKLKKGSE---- 929

Query: 968  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVM 1026
               HQ   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+ 
Sbjct: 930  ---HQ---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLK 983

Query: 1027 ALPSSSTAGRLLLLLKAISETETSSSKRAK------------------KKSSYDVGSLVQ 1068
                  T G LL +   +++     +++                    KK +  +G  V 
Sbjct: 984  TTEPGVT-GFLLAVEGPVAKRTMRQTRKDSEAVDEDEEVDPALAVGPIKKHALSIGDKVT 1042

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----K 1124
              +  +KP  + +    G  G IH +++ DD   V  +  +  K+G+TVTAR+I     K
Sbjct: 1043 GTVKSVKPTHVVVTLEDGITGCIHASQILDD-VPVGTSPTAKLKVGKTVTARVIGGRDVK 1101

Query: 1125 SNK--PDMKKSFLW---ELSIKPSML-----------TVSEIGSKLLFEECDVSIGQRVT 1168
            + K  P     F+    ELS++PS L           +VS +     ++      GQ VT
Sbjct: 1102 TFKFLPISHPRFIRTIPELSVRPSELEKDGHTALNTYSVSPVEKIRQYQ-----AGQTVT 1156

Query: 1169 GYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
             ++  Y V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+     
Sbjct: 1157 CFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKCPDKKFRVGQALKATVVGPVSS 1216

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K  L L L             I    ++    +G++  GR+ ++     GL V       
Sbjct: 1217 KAFLCLSL-------------IGPHKLE----KGEVAMGRVVEVTPN-KGLTVSFPFGKK 1258

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
            GRV         VSD    Y E    PL  +   + V+C VL     +     + LSLR 
Sbjct: 1259 GRVSI-----FHVSD---SYSE---TPLQDFVPQKIVRCYVLSTEEQM-----LTLSLR- 1301

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
                 SS  + +  + V+ P   ++ I+D+    +++GYV++V   G    L   +    
Sbjct: 1302 -----SSRTNPETKSKVEDP--EIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLA 1354

Query: 1407 LLSNLSDGYVESPE----KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               ++S  Y  S +    K  P GKL+  +VL +      VE++    D+
Sbjct: 1355 DYPHVSQ-YSPSEKDLYNKYLPEGKLLTAKVLRLNHRQDLVELSFLPCDT 1403


>gi|119570025|gb|EAW49640.1| programmed cell death 11, isoform CRA_b [Homo sapiens]
          Length = 1872

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 402/1487 (27%), Positives = 682/1487 (45%), Gaps = 182/1487 (12%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      ++   
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVV--- 703

Query: 742  KYSLINSAQQL-----PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
              + I  A+++     P + S IHP  ++ G+V +I + G F++F   L+G AP++   D
Sbjct: 704  SLTGICGAEEVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSD 763

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  L
Sbjct: 764  KFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEEL 822

Query: 857  QS-----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLA 910
            Q      S  +   ++ +     G  ++  V E   D  VV S     D+    + +  A
Sbjct: 823  QGVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRA 882

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
            G  VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       
Sbjct: 883  GQEVESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE------- 927

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029
            HQ   AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+    
Sbjct: 928  HQ---AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTE 984

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEIT 1072
               T   L +   A   T   + K ++                 KK +  +G +V   + 
Sbjct: 985  PGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVK 1044

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
             IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K
Sbjct: 1045 SIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-K 1099

Query: 1133 SFLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--Y 1172
            +F +             ELS++PS L    T     S    E+      GQ VT ++  Y
Sbjct: 1100 TFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKY 1159

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L
Sbjct: 1160 NVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCL 1219

Query: 1233 VLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
             L  P +                  + EG++  GR+ K+     GL V           F
Sbjct: 1220 SLTGPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------F 1252

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
             ++  + +      Y E    PL  +   + V+C +L  +  V     + LSLR      
Sbjct: 1253 GKIGTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------ 1298

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
            SS  + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  
Sbjct: 1299 SSRTNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARY 1353

Query: 1412 SDGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            S     SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1354 SHVSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400


>gi|363735321|ref|XP_421739.3| PREDICTED: protein RRP5 homolog [Gallus gallus]
          Length = 1793

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 384/1419 (27%), Positives = 648/1419 (45%), Gaps = 156/1419 (10%)

Query: 114  GISGKL--PRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
            G +GK   P++        +  GM   G + EV   +LVI LP GL G   +   +DA  
Sbjct: 19   GTTGKKAKPKFEQDNLFDELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYS 78

Query: 169  PILDNEI---EANED-NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG 224
             +L  ++   E  ED N L  ++  G LV C+V  ++  K   G+R I LS+    + KG
Sbjct: 79   ELLSKQVTQGELLEDLNSLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKSVNKG 136

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLL 279
            LS   +  GM+L+ +V S+EDHGY++  G+     FLP         A   G D+K G  
Sbjct: 137  LSASALTSGMLLSGFVSSVEDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQS 196

Query: 280  LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
            L  V+  +    +VV LS+D   V+  +  + +  ++  L+PG++V  +VQ +   GV L
Sbjct: 197  LNCVIEEVKNEGRVVRLSADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSL 256

Query: 340  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
            +FL+ FTG VD  H+     T     +Y+ ++ V A IL   PTS+ V LTL    LH  
Sbjct: 257  TFLSSFTGIVDFMHVDPEKST-----NYSPNQMVKACILSTHPTSKVVRLTLRQAFLHPG 311

Query: 400  APPSHV---KVGDIYDQSKVVRVDRGLGLL--LDIPSTPVSTPAYVTISDVAEEEVRKLE 454
              P+ +   ++G + ++S V    +  G +  LD      + P +++       + RK  
Sbjct: 312  GSPNQLSNDRIGAVVEESTVKAFYKQFGAVFQLDDGMLAFARPKHLS-------KTRKSF 364

Query: 455  K--KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
            K   +K G   + RI+ +  ++ +    LK    E     + D+  G V++GKV+++   
Sbjct: 365  KPAAFKAGCKHKCRIIDYSLMDEMCIVSLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPI 424

Query: 513  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLV 570
            G  V+   G+K L P  H+++  + +P KK+ VG E+  RVL      K++ +T KKTLV
Sbjct: 425  GMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLV 484

Query: 571  KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
            +SKL +LSSY +A   LITHG++    + GC V+FYN V+G  P++EL  +P   P  ++
Sbjct: 485  QSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVF 544

Query: 631  HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD-----------LVKLGSLVSGVVDV 679
            H GQVVK  ++   P   R+ LSF +    V E               ++G +V   V  
Sbjct: 545  HDGQVVKVMVLKCEPQQERLLLSFRLSSRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLK 604

Query: 680  VTPNAVVVYVIAKGYSK-GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
               N + V ++  G +    +PT HL+D + ++ ++   ++ G    +++ L ++   ++
Sbjct: 605  KNENGLEVSILEDGGNVIAWLPTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRII 664

Query: 739  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L  K ++I++ Q  Q+    S I P  ++ GYV  ++  G FV F   +TG AP+    D
Sbjct: 665  LCRKSAVISAVQEEQVVRSFSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSD 724

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEE 851
                D    + VGQ+V + ++ ++ E  R+ LSLK S CSS D+     S + ++F   E
Sbjct: 725  KFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLSLKVSECSSGDSAAESFSLLNQYFKEVE 784

Query: 852  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQ 908
            +I  L   +      + V   + G  ++  V +  + G   +      V G     T + 
Sbjct: 785  EIRNLLRRREESGLARCVCELVPGKELQLVVQDVMEDG--SALFSGGCVRGLTVTATRYH 842

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L G  V  G   +  +L V      V +SL+   +                 K+ A + L
Sbjct: 843  LGGKNVIPGEKAKGLVLHVDAITSKVYVSLREELL-----------------KKRAKQRL 885

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMA 1027
              +    AIV+ + E + ++SL +          S +N T +F  ++   GQ + AT + 
Sbjct: 886  TKNSQHPAIVQHIAEEFAIVSLLDSGRLAAIPIASHFNDTFRFDSEKLKVGQRIYAT-LK 944

Query: 1028 LPSSSTAGRLLLLL-----------KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
            +  ++  G LL +            +  SET    +  A  K S  +G +V   +  +KP
Sbjct: 945  MVKANDLGVLLAVQDPAKKNAFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKP 1004

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARIIAKSN-------- 1126
              + +       G IH + + D+   V  + F  +  K GQ VTAR+I   +        
Sbjct: 1005 THVTVAIDDKLTGSIHASRILDE---VPIHSFPTYTLKAGQKVTARVIGGRDVNTHRYLP 1061

Query: 1127 --KPDMKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWAL 1180
               P   +S + ELSI+PS +   V  +      +    + GQ VT +V K +    W  
Sbjct: 1062 ITHPHFTRS-VPELSIRPSEIEGEVETMRDDTREKLGPYNTGQTVTCFVRKYNTLKNWLE 1120

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            + ++  ++ ++  L  +     L+  ++ F  G+A++  V   +  +  L L L   Q  
Sbjct: 1121 VEVTPDVRGRVPRLLLSLNTKVLKHPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS- 1179

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
                            +  G I  G ++K++  + GL + +     G+V    L +    
Sbjct: 1180 ----------------LEPGTITVGMVAKMIPHI-GLTITLPGGKAGKVSIFHLSD---- 1218

Query: 1301 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
                 Y E    PLS +  G+ V+C +L           ++LSLR S   ++  NS  + 
Sbjct: 1219 ----KYTES---PLSDFKIGKVVRCYILS-----NENGKIQLSLRQS--RLNPRNSRKVE 1264

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP- 1419
             DV+     +  I+D+    +V+GYVK+VT  G F  LS  L  ++L  N+S  +V+   
Sbjct: 1265 -DVE-----ITCIKDVKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHS 1318

Query: 1420 --EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              EK  P GKL+  +VL V      VE++L   D+   S
Sbjct: 1319 LYEKYLPEGKLLTAKVLDVNKKENHVELSLLPEDTEMPS 1357


>gi|440912389|gb|ELR61959.1| Protein RRP5-like protein, partial [Bos grunniens mutus]
          Length = 1304

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 391/1379 (28%), Positives = 644/1379 (46%), Gaps = 171/1379 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   KK +K   KT++   ET   
Sbjct: 11   FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 66

Query: 107  LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                     S K  R   +I  ++++  GM++ G V EVNE +LVI LP GL+G  +  +
Sbjct: 67   ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELVISLPNGLQGYVQVTE 117

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     LP +F  G LV C+V  LD  K    K+ + LSL  
Sbjct: 118  ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 175

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS ET++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 176  KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIWQKNKGAK 235

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +  +R VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 236  LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 295

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L FL++F+G VD  HL      T + N     ++V A +L V P +RAV L+L P
Sbjct: 296  PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 350

Query: 394  YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +   ++G + D   V       G    +      T AY   + ++  + 
Sbjct: 351  VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 407

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKGKV+ + 
Sbjct: 408  TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 467

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
              G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    K+K++ +T KKT
Sbjct: 468  PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 527

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y +A   L THG+I +++ +GC V+FYN VQG  PR EL  +   +P S
Sbjct: 528  LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 587

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD------LVKLGSLVSGVVDVV 680
            +++ GQVVK  +++  P+  R+ LSF +   P +  E         V  G LV   V   
Sbjct: 588  VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQECEGQSQKKKKAVSAGQLVDVKVLEK 647

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+      G +PT HL+DH+ +  ++   ++ G    ++L L      +LL 
Sbjct: 648  TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 706

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V NI + G FV+F   L+G AP++   D  
Sbjct: 707  RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 766

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEK--I 853
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 767  VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 826

Query: 854  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLA 910
              L S++ +   ++ +     G  ++ +V E  + G V+ F E   V G +   + +  A
Sbjct: 827  RSLMSNR-DSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRA 883

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
            G  +E G   +A IL+V   +  V +SL    +        NR+A+K K+  +       
Sbjct: 884  GQELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD------- 928

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029
               + AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+    
Sbjct: 929  ---LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTE 985

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAE 1070
               T   LLL ++  +   T    R                     KK +  +G +V   
Sbjct: 986  PGVTG--LLLAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVIGTVKKHTLSIGDMVTGT 1043

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            +  IKP  + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      DM
Sbjct: 1044 VKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DM 1099

Query: 1131 KK-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV- 1171
            K   FL            ELS++PS L      T++      L +      GQ VT ++ 
Sbjct: 1100 KTFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLK 1159

Query: 1172 -YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK-- 1228
             Y +  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+   +  K  
Sbjct: 1160 KYNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAF 1219

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGR 1288
            L   ++ P +                  + +G++  GR+ K+ +   GL V      +GR
Sbjct: 1220 LCLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFP---FGR 1257

Query: 1289 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
            V    + +  VSD  S      F P       Q V+C VL  +  V     + LSLRSS
Sbjct: 1258 VGRVSMFH--VSDSYSETHLEDFVP------QQIVRCYVLSAATPV-----LTLSLRSS 1303



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 167/414 (40%), Gaps = 66/414 (15%)

Query: 1043 AISETETSSSKRAKKKSSYDVGSL-----VQAEITEIKPLELRLKFGIGFHGRIHITEVN 1097
            +I  +E S++  A ++ S+ + SL     V+A++ ++ PL L LKF   F G +    ++
Sbjct: 259  SIGHSEVSAAI-ATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLD 317

Query: 1098 DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1157
              K+      FSN    Q V A ++         ++    LS++P  L      ++LL +
Sbjct: 318  PKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPGRPLTRLLCQ 365

Query: 1158 ECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            +    +    V G+       + L   T++   +  L      ++P         F  G 
Sbjct: 366  QLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA-------FKPGN 418

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
                 ++  ++  +L  L LR     I +      +D     I  G +V G++  I    
Sbjct: 419  THKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKGKVLTIKPH- 469

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
             G+VV++G  + G V    L +I + +P   Y  G        DE   VKC+VL      
Sbjct: 470  -GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKCRVLLCDPKA 517

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
            +    + ++L+ +L              V++    +   +D  P +   G++  V   GC
Sbjct: 518  K---KLMMTLKKTL--------------VESKLPAITCYDDAKPGLQTHGFILRVKDYGC 560

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
             +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ ++ +
Sbjct: 561  IVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 614



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 162/395 (41%), Gaps = 55/395 (13%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 456  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 511

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 512  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 560

Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            ++     ++  +    L + Y P      +  F+ G+ V   VL+    K+ + L  R  
Sbjct: 561  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 616

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKN 1296
             D    +  +  +   +  +  G +V  ++  +     GL V + PH + G +    L +
Sbjct: 617  SD--PKQECEGQSQKKKKAVSAGQLVDVKV--LEKTKDGLKVAVLPHNIPGFLPTAHLSD 672

Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
               + PL       +  L   D    V C  L +S   R     + +L S+++G      
Sbjct: 673  HVTNGPL------LYHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVEG------ 717

Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
                      G++ +   ++ P M++ G+VKN+   G F+     L      + LSD +V
Sbjct: 718  ----------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFV 767

Query: 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
             S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 768  TSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 802



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 452  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 511

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIEN 1490
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N
Sbjct: 512  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN 566


>gi|344274767|ref|XP_003409186.1| PREDICTED: protein RRP5 homolog [Loxodonta africana]
          Length = 1872

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 408/1484 (27%), Positives = 680/1484 (45%), Gaps = 176/1484 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   +K   K KK + +  E +  
Sbjct: 8    FPRGGTRKAHKSEKAFQQSVEQDNLFDITTEEESTKRKKSQKGPAKTKKLKIEKRENIKL 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              +T++ +  GM++ G V EV++ +LVI LP GL+G  +  + 
Sbjct: 68   VKEKF------------EILTVETLCEGMRILGCVKEVSDLELVISLPNGLKGFVQVTEI 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  +   +K  GK+ + LSL   
Sbjct: 116  CDAYTKKLNEQVAQEEPLKDLVRLPELFSPGMLVRCVVSSVGITEK--GKKSVKLSLNPR 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             +   LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +
Sbjct: 174  NVNGVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVSGNRAFLPLQKAQEDTRQKNKGAKL 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  V+  +  +  VV LS     VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 234  KVGQYLNCVIEEVKSSGGVVSLSVGHSEVSTAIATEEQNWTLNNLLPGLVVKGQVQKVTP 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ ++FL+YFTG VD  HL+     T + N     + V A ILF+ P +RAV L+L P 
Sbjct: 294  FGLTVNFLSYFTGLVDFMHLEPKKTGTYFSN-----QAVRACILFIHPRTRAVRLSLRPV 348

Query: 395  LLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             L    P + +    +G + D   V       G    +    +   AY   S ++  +  
Sbjct: 349  FLQPGRPLTRLSCQHLGAVLDDLPVHGFFNKAGATFKLKDGAL---AYARFSHLSNSKNV 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K G+  + RI+ +  ++ LA   L+ S  E    ++ D KPG VVKG V+ +  
Sbjct: 406  FKPEIFKPGNTHKCRIIDYSPMDELALLSLRTSIIEAQYLSYHDTKPGAVVKGTVLTIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            +G +V+    ++ L P  H+++  +  P KK+ VG E+  RVL    ++K++ +T KKTL
Sbjct: 466  YGMLVKVGEQIRGLVPPMHLADILMKNPEKKYSVGDEVKCRVLVCDPEAKKLMMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V+S+L  ++ YA+A   L THG+I +++  GC V+FYN VQG  P+ EL  +    P ++
Sbjct: 526  VESRLPAITCYADAKPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYIPAPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD--------LVKLGSLVSGVVDV 679
            ++ GQV+K  +++  PA  R+ LSF +   P    E +         V +G LV   V  
Sbjct: 586  FYPGQVMKVVVLNCEPAKERMLLSFKLLSDPEAKKEREGGSQKKRRAVHVGQLVDVKVVE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+      G +P  HL+DH+ +  ++   ++ G    ++L L +E   +LL
Sbjct: 646  KTEDGLEVAVLPHSIP-GFLPIPHLSDHVPNGPLLYHWLQAGDTLHRVLCLQSE-GRVLL 703

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP++   D 
Sbjct: 704  CRKPALVSAVEGGQDPKSFSEIHPGMLLMGFVKSIKDYGVFVQFPSGLSGLAPKAAMSDK 763

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      LL + +  LQ
Sbjct: 764  FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDVA-TTSLLLLSQCLEELQ 822

Query: 858  S-----SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQL 909
                  S  +   ++ +     G +++ +V E  + G VV       V G +   + +  
Sbjct: 823  GVRSLMSNRDSVLIQTLAEMTPGMILDLEVQEVLEDGSVVF--GGGPVPGLVLRASRYHR 880

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
            AG  VESG   +A +L+V   +  V +SL    +        NR+ +K K+  E      
Sbjct: 881  AGQEVESGQKKKAVVLNVDMLKLEVHVSLCQDLV--------NRKHKKLKKGSE------ 926

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
                  A V+ ++E++ + SL E      ++  S  N T +F  ++   GQ V   + A 
Sbjct: 927  ----YQATVQHLEESFAIASLVETGQLAAFSLTSHLNDTFRFDSEKLQVGQGVSLALKAT 982

Query: 1029 PSSST----------AGRLLLLLKAISET--ETSSSKRA-----KKKSSYDVGSLVQAEI 1071
                T          A R +   +  SET  E   S  A      KK +  +G +V   +
Sbjct: 983  QPGVTGLILAVEGPAAKRTMRQTRKESETVDEDEESDPALVVGTVKKHTLSIGDMVTGTV 1042

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK 1127
              IK   + +    G  G IH + + DD   V  +  S  K+G+TVTAR+I     K+ K
Sbjct: 1043 KSIKATHVVVTLEDGVIGCIHASNILDD-VPVGTSPTSKLKVGKTVTARVIGGRDVKTYK 1101

Query: 1128 --PDMKKSFLW---ELSIKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKV 1174
              P     F+    ELS++PS L     T     S    E+      GQ VT ++  Y V
Sbjct: 1102 FLPISHPRFIRTIPELSVRPSELEKDGHTALNTHSVSPSEKIKQYQAGQTVTCFLKRYNV 1161

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
              +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+  +  K  L L L
Sbjct: 1162 VKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALNATVVGPDSCKAFLCLSL 1221

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                         I    ++    +G++  GR+ K+     GL V      +GR      
Sbjct: 1222 -------------IGPHKLE----KGEVAMGRVVKVTPN-EGLTVSFPFGKFGRASI--- 1260

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
                VSD    Y E    PL  +   + V+C VL  +  V     + LSLR      SS 
Sbjct: 1261 --FHVSD---SYSE---TPLEDFVPQKIVRCCVLSTAGHV-----LTLSLR------SSR 1301

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             + +  + ++ P   +  I+D+    +++GYVK V   G    L   +   V L+  S  
Sbjct: 1302 TNPETKSKIEDP--EINSIQDIEEGQLLRGYVKAVEPHGVLFSLGPSV---VGLARYSHV 1356

Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP K+       P GKL+  ++LS+      V ++   SD+
Sbjct: 1357 SQYSPSKKALYSRYLPEGKLLTAKILSLNHKRSLVRLSFLPSDT 1400



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K+F  GQ++ ATV+  P S  A   L L+                    + G
Sbjct: 1187 FKVLKHPDKKFRIGQALNATVVG-PDSCKAFLCLSLIGP---------------HKLEKG 1230

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P E L + F  G  GR  I  V+D  S   E    +F   + V   +++
Sbjct: 1231 EVAMGRVVKVTPNEGLTVSFPFGKFGRASIFHVSDSYS---ETPLEDFVPQKIVRCCVLS 1287

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V+    
Sbjct: 1288 TAG-------HVLTLSLRSSR-TNPETKSKIEDPEINSIQDIEEGQLLRGYVKAVEPHGV 1339

Query: 1180 LLTISRHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            L ++   +     +   S Y PS+   + R    GK +T  +LS+N ++ L+RL   P  
Sbjct: 1340 LFSLGPSVVGLARYSHVSQYSPSKKALYSRYLPEGKLLTAKILSLNHKRSLVRLSFLPSD 1399

Query: 1239 DGISD 1243
             G  D
Sbjct: 1400 TGKPD 1404


>gi|326433657|gb|EGD79227.1| hypothetical protein PTSG_12966 [Salpingoeca sp. ATCC 50818]
          Length = 2005

 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 377/1382 (27%), Positives = 647/1382 (46%), Gaps = 144/1382 (10%)

Query: 186  IFHVGQLVSCIV--LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
            +F VGQ + C V   +L +++  I      L++  + + KGL    + +G V+ A VKSI
Sbjct: 182  LFSVGQQIVCRVKSTELKNNRPIIN-----LTVNPTAINKGLETAALVKGRVVAACVKSI 236

Query: 244  EDHGYILHFGLPSFTGFLPRNN---LAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSD 299
            E+HGY+L  G+   TGFL  NN   L E  G   + PG  L   + +  +  +   + + 
Sbjct: 237  EEHGYVLDLGVGHATGFLSTNNAKPLCEKLGTKSLVPGHPLLVALTTTVKGGRAAKVIAA 296

Query: 300  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
            P  V+     D + +++  L  G++V  +V++   +G++ S L  F   V  +HL +   
Sbjct: 297  PSEVAATKLTD-EEVTLKQLRAGLLVDAKVKAHTRSGLIASALG-FDANVHYYHLPHVSG 354

Query: 360  ---TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR--APPSHVKVGDIYDQS 414
                   K  Y +   V ARI+F +P + ++ L+L P  +  R  A  +   +G I + +
Sbjct: 355  GDVQKRLKTAYPEGSVVPARIIFSNPAASSLNLSLLPAHISMRGSAAGTGATLGAIVETA 414

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
             V+R D   G +LD+ +   +   +V  S V++++     KK K GS  R RI+    ++
Sbjct: 415  TVLRTDGRGGAVLDLGA---AGQGFVAPSRVSDKKSDASLKKLKPGSVHRARIISVHPMD 471

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
             +    L+ S  +   + + D+  G VV+  V +++ +GA+V+    ++ L P  H ++ 
Sbjct: 472  NIVAVSLQKSVLDLPYYRYEDIPAGAVVEATVESLEEYGALVRLSDTIRGLVPALHFADV 531

Query: 535  EIVKPGKKFKVGAELVFRVLG--VKSK---RITVTHKKTLVKSKLAILSSYAEATDRLIT 589
             + KP  KF  GA++  RVL   V SK   R+  T KKTLV+S L +++S A A   ++ 
Sbjct: 532  TLRKPAVKFHPGAKVKCRVLSNIVTSKGKRRLAFTCKKTLVESDLPVIASAASARRGMLA 591

Query: 590  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMSSIPASR 648
            HG+I  I   GC VRFYN V+G  P  EL      + +S Y   GQVVKCR++ +  A R
Sbjct: 592  HGFIDSIRPFGCIVRFYNNVKGLVPLKELSATEKIKDASAYFKEGQVVKCRVVQTDQAKR 651

Query: 649  RINLSFMMKPTRVSEDDLVKL---------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
            RI LSF+   T +SEDD+ K          GS+V+ V+D V  + + V++      + TI
Sbjct: 652  RIGLSFIH--TALSEDDINKQRDTVTALSPGSIVTAVIDSVQTSGLNVHLKENPLVRVTI 709

Query: 700  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS-------NLLLSAKYSLINSAQQL 752
             + HL DH   A  M S    G +   +++     +       +L++ AK +++ S  +L
Sbjct: 710  DSMHLTDHPSLAPQMASCFTEGQKITAVVIWKRNRNVSLSLKPSLMVQAKEAVVASKDEL 769

Query: 753  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
                 H        GY+ +   T  FV  +G ++G  P  +A  G    +   +   Q+V
Sbjct: 770  KEGEQHF-------GYISSSTRTMSFVNLIGSVSGMCPIREASSGYVRSMESYFSPNQTV 822

Query: 813  RSNILDVNSETGRITLSLKQSCCS-STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
             + +  +  + G++  S K +  S   +ASF+Q +F   E+IA+   S      LK+  G
Sbjct: 823  CARVHAI--KDGKVDFSFKSAQLSPQQEASFIQSYFADLERIAVSSRS----DVLKYKAG 876

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
             ++ +V++    +  D+G+ V  ++     GFI+  Q  G  +E+   ++A +LDV  A+
Sbjct: 877  DVVSAVVK----DIKDYGITVVTDD--GCTGFISSAQAKGVPLETDGKVEAVVLDVDTAK 930

Query: 932  RLVDLSLKTVFIDRFRE------------------ANSNRQAQKKKRKREASKDLGVHQT 973
             ++DL ++   +   ++                      +Q   +  + +  + L   Q 
Sbjct: 931  SVLDLGVRPSLVAGAKKVLGGAGEKKKSKKKGKKGKKGKQQQDDEDDEDKPVEKLSQEQE 990

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
             +A +E+VKE+Y+VLS+ +    +  A+   YN ++ P ++   G      V+AL    T
Sbjct: 991  ADATIELVKEDYMVLSVGDGRLVV--AACKSYNDRESPFRKHFPGNGARVKVLALDEKHT 1048

Query: 1034 -----------AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLK 1082
                        G+        ++ +          S   +G++++A+I+ I   +L LK
Sbjct: 1049 FVQVLAEDNKGKGKDAKKQAKKADADKKQVAALSPASDATMGAIIKAKISAIHKAQLNLK 1108

Query: 1083 FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII----AKSNK--PDMKKSF-- 1134
               G  GR+HITEV   + +  ++ F  F   Q V  R+I    AK++   P    +F  
Sbjct: 1109 LAGGGRGRVHITEVEQPQEDGAKS-FDPFTKNQVVECRVIGYRDAKNHNFLPITHTNFTS 1167

Query: 1135 -LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
             + E S++   L+ S+           V +GQ++ G V  V+     + IS HL  ++ +
Sbjct: 1168 TIVEASMRAQDLSKSKKKVVPRLTADQVQVGQKLLGVVGAVEPNRMWIDISIHLSGRVSL 1227

Query: 1194 LDS-AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             ++       L+  Q  +  G  +T  V+++   K  L              T+D +   
Sbjct: 1228 QNAQPLNGDMLKSLQDMYEPGSPITTWVVAVKNGKVEL-------------STIDPATQE 1274

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1312
             Q      +I  GR+     G   L+V++G    GRVH      IC  D     D+   D
Sbjct: 1275 EQ---ENKEITTGRVH--TKGSIHLIVRLGRGKKGRVH------ICDVD-----DKFHAD 1318

Query: 1313 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH-LE 1371
            P   +   + VK K +E  +            +   D   S   S++ T    P    + 
Sbjct: 1319 PFQRFALHELVKVKKVEAPKHSHRNEQ-----QHKADCQLSMRPSEIDTSTAAPRDPIIA 1373

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
               D+  + IV+GYV NVT  G F+ LSR + A+V ++NLSD +++   K F  G+LV G
Sbjct: 1374 SAADVKQDQIVRGYVCNVTDNGVFVALSRHVSARVKIANLSDLFIKDFTKVFKPGQLVKG 1433

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +VL V    K +E+TLK S +    +S+    ++L +G IV G IKRVES+G+F+TI+N+
Sbjct: 1434 KVLFVTDDGK-IELTLKRS-AVNPRESKPVRYNDLKIGQIVAGVIKRVESFGVFVTIDNS 1491

Query: 1492 NL 1493
             L
Sbjct: 1492 KL 1493



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 5/169 (2%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            VK   +V G V  VT N V  +V    +    +   +L+D          V KPG     
Sbjct: 1378 VKQDQIVRGYVCNVTDNGV--FVALSRHVSARVKIANLSDLF--IKDFTKVFKPGQLVKG 1433

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF-LGRL 785
             ++   +   + L+ K S +N  +  P   + +    +V G +  +   G FV     +L
Sbjct: 1434 KVLFVTDDGKIELTLKRSAVNPRESKPVRYNDLKIGQIVAGVIKRVESFGVFVTIDNSKL 1493

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            +G A  S+  D +  +L   Y VG +V++ IL +N E  RI+L+LK S 
Sbjct: 1494 SGLAHISECADAKIDNLDAVYNVGDAVKAKILRLNKEKKRISLTLKPSA 1542



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 10/191 (5%)

Query: 483  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            A+  + ++ + +DVK   +V+G V  V   G  V     V A   + ++S+  I    K 
Sbjct: 1365 AAPRDPIIASAADVKQDQIVRGYVCNVTDNGVFVALSRHVSARVKIANLSDLFIKDFTKV 1424

Query: 543  FKVGAELVFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
            FK G  +  +VL V    +I +T K++ V  + +    Y +     I  G I ++E  G 
Sbjct: 1425 FKPGQLVKGKVLFVTDDGKIELTLKRSAVNPRESKPVRYNDLKIGQIVAGVIKRVESFGV 1484

Query: 602  FVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
            FV   N  + G A  SE          ++Y+VG  VK +I+      +RI+L+  +KP+ 
Sbjct: 1485 FVTIDNSKLSGLAHISECADAKIDNLDAVYNVGDAVKAKILRLNKEKKRISLT--LKPSA 1542

Query: 661  VS------EDD 665
            V       EDD
Sbjct: 1543 VEGKQSTGEDD 1553



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 158/405 (39%), Gaps = 77/405 (19%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG  +   +  ++P  + +   I   GR+ +        +++++L   ++ G  +T    
Sbjct: 1197 VGQKLLGVVGAVEPNRMWIDISIHLSGRVSLQNAQPLNGDMLKSLQDMYEPGSPITT--- 1253

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
                         W +++K   + +S I      E+ +  I    TG V+   +   ++ 
Sbjct: 1254 -------------WVVAVKNGKVELSTIDPATQEEQENKEI---TTGRVHTKGSIHLIVR 1297

Query: 1183 ISRHLKAQLFI--LDSAYEPSELQEFQRRFHIG-KAVTGHVLSINKE---KKLLRLVLRP 1236
            + R  K ++ I  +D  +     Q F     +  K V     S   E   K   +L +RP
Sbjct: 1298 LGRGKKGRVHICDVDDKFHADPFQRFALHELVKVKKVEAPKHSHRNEQQHKADCQLSMRP 1357

Query: 1237 FQ---------DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
             +         D I     D+  D          IV G +  +     G+ V +  H+  
Sbjct: 1358 SEIDTSTAAPRDPIIASAADVKQDQ---------IVRGYVCNVTDN--GVFVALSRHVSA 1406

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL-RS 1346
            RV    L ++ + D         F  +  +  GQ VK KVL ++   +    +EL+L RS
Sbjct: 1407 RVKIANLSDLFIKD---------FTKV--FKPGQLVKGKVLFVTDDGK----IELTLKRS 1451

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAK 1405
            +++   S            P ++     DL    IV G +K V S G F+ + + KL   
Sbjct: 1452 AVNPRESK-----------PVRY----NDLKIGQIVAGVIKRVESFGVFVTIDNSKLSGL 1496

Query: 1406 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
              +S  +D  +++ +  + +G  V  ++L +    KR+ +TLK S
Sbjct: 1497 AHISECADAKIDNLDAVYNVGDAVKAKILRLNKEKKRISLTLKPS 1541


>gi|355783073|gb|EHH64994.1| hypothetical protein EGM_18331 [Macaca fascicularis]
          Length = 1873

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 404/1485 (27%), Positives = 683/1485 (45%), Gaps = 176/1485 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLS--SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            G  L  ++  +     VV LS     +T S  +   +  I  D +   +     +  +  
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEETASAGIVLPVSFIGRDNVALSVYCEQCLTFVTP 295

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P 
Sbjct: 296  FGLTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPI 350

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             L    P + +    +G + D   V    +  G    +    +   AY  +S +++ +  
Sbjct: 351  FLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNV 407

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S
Sbjct: 408  FNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKS 467

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            +G +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL
Sbjct: 468  YGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTL 527

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V+SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +
Sbjct: 528  VESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERV 587

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDV 679
            ++ GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V  
Sbjct: 588  FYTGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLE 647

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL
Sbjct: 648  KTKDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLL 706

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D 
Sbjct: 707  CRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDK 766

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAM 855
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  
Sbjct: 767  FVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQG 826

Query: 856  LQS--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            ++S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG 
Sbjct: 827  VRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQ 886

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ
Sbjct: 887  EVESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ 931

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
               AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+      
Sbjct: 932  ---AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPG 988

Query: 1032 STAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEIT 1072
             T   LLL ++  +   T    R                     KK +  +G +V   + 
Sbjct: 989  VTG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVK 1046

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
             IKP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK 
Sbjct: 1047 SIKPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKT 1102

Query: 1133 -SFL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YK 1173
              FL            ELS++PS L    T     S    E+      GQ VT ++  Y 
Sbjct: 1103 FKFLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYN 1162

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L 
Sbjct: 1163 VVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLS 1222

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
            L             I    ++    EG++  GR+ K+     GL V      +G++    
Sbjct: 1223 L-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVS 1261

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353
            +    VSD    Y E    PL  +   + V+C +L  + +V     + LSLR      SS
Sbjct: 1262 I--FHVSD---SYSE---TPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SS 1302

Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
              + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S 
Sbjct: 1303 RTNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSH 1357

Query: 1414 GYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1358 VSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1402


>gi|297301793|ref|XP_001105950.2| PREDICTED: protein RRP5 homolog [Macaca mulatta]
          Length = 1858

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 401/1480 (27%), Positives = 678/1480 (45%), Gaps = 181/1480 (12%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +  +  VV LS     VS  +  +     + L+ P              G
Sbjct: 236  GQYLNCIIEKVKGSGGVVSLSVGHSEVSTAIATEEISCFLILVTP-------------FG 282

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 283  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 337

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 338  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 394

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 395  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 454

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 455  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 514

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 515  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 574

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 575  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 634

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 635  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 693

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 694  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 753

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 754  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 813

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 814  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 873

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 874  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 916

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 917  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 975

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 976  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1033

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1034 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1089

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1090 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1149

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1150 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVIGPDSSKAFLCLSL- 1208

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V      +G++    + 
Sbjct: 1209 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI- 1247

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
               VSD    Y E    PL  +   + V+C +L  + +V     + LSLR      SS  
Sbjct: 1248 -FHVSD---SYSE---TPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRT 1289

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
            + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +      S++S   
Sbjct: 1290 NPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHS 1347

Query: 1416 VESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                    K  P GKL+  RVL +      VE++    D+
Sbjct: 1348 SSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1387


>gi|348579013|ref|XP_003475276.1| PREDICTED: protein RRP5 homolog [Cavia porcellus]
          Length = 1841

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 389/1455 (26%), Positives = 673/1455 (46%), Gaps = 162/1455 (11%)

Query: 80   AVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANK----ITLKNISAGM 135
            A+E    +   +K  K+E+    +V+  G+LF   I    P+  ++     T K++  GM
Sbjct: 3    ALEESFPRGGSRKIHKSEKSHQPSVEH-GNLFDISIEEDPPKGKDQNGPAKTKKSLCKGM 61

Query: 136  KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIFH 188
            ++ G V EVNE +LVI LP GL+G  +  +  D      NE  A E+ L     LP +F 
Sbjct: 62   RILGCVKEVNELELVIGLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLKDLLRLPELFS 121

Query: 189  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248
            +G LV C+V  +     E GK+ + LSL    + + LS E ++ GM+LT  V S+EDHGY
Sbjct: 122  LGMLVRCVVSSVSIT--EQGKKSVKLSLNPRNVNRVLSAEALKPGMLLTGTVSSLEDHGY 179

Query: 249  ILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 303
            ++  G+     FLP+    E     N G  +K G  L  ++  +     VV LS +   +
Sbjct: 180  LVDIGVEGTRAFLPQQKAQEYIRQKNKGAKLKVGQYLNCIIEEMKGNGGVVGLSIEQSEI 239

Query: 304  SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
            S  +    +  +++ L+PG+++  +VQ + + G+ L+F T+FTG VD  HL         
Sbjct: 240  STAIATQEQNWNLNNLLPGLVLQAQVQKVTQFGLTLNFFTFFTGLVDFMHLD-----PKK 294

Query: 364  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRVD 420
               Y  ++ V A +L V P +RAV L+L P  L    P + +    +G +     V    
Sbjct: 295  VGMYFSNQTVRACVLCVHPRTRAVRLSLRPIFLQPGRPLTRLSCQHLGAVLQDVPVQGFF 354

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
               G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA   
Sbjct: 355  NKAGATFRLKDGAL---AYARLSHLSDSKNGFRPEAFKPGNTHKCRIIDYSQMDELALLS 411

Query: 481  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
            L+ S  E     + D+K G V+KG V+ +  FG +V+    ++ L P  H+++  +  P 
Sbjct: 412  LRTSVIEAQYLKYHDIKTGAVIKGTVMTIKPFGMLVKVGEQMRGLVPAMHLADIPMKNPE 471

Query: 541  KKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            KK+ VG E+  RVL    ++K++ +T KKTLV SKL +++ Y +A   L THG I +++ 
Sbjct: 472  KKYHVGDEVKCRVLLCDPEAKKLILTLKKTLVTSKLPVITCYEDAKPGLQTHGAILRVKD 531

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-- 656
            +GC V+FYN VQG  P+ EL      +P  +++VGQVVK  +++  P+  R+ LSF +  
Sbjct: 532  YGCIVKFYNDVQGLVPKHELSDQHIPDPEKVFYVGQVVKVAVLNCEPSRERMLLSFKLLS 591

Query: 657  KPTRVS--------EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             P R +            + +G LV   +   T + + V V+        +PT HL+DH+
Sbjct: 592  DPERKNGSVERRQKSKKAISVGQLVDVKILEKTKDGLHVAVLPHNIP-AFLPTPHLSDHV 650

Query: 709  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVH 766
             +  ++   ++ G    ++L L      +LL  K +L+++ +  Q+P   S I P  ++ 
Sbjct: 651  TNGPLLYHWLQAGDTLHRVLCLSQSEKQVLLCRKPALVSAVEDGQVPKSFSEIQPGMLLV 710

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G+V +I + G FV+F   L+G AP++   D    + S  +  GQ+V   +  V+ E  R+
Sbjct: 711  GFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEGQTVVVKVTKVDEEKQRM 770

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE----LKWVEGFIIGSVIEGKV 882
             +SL+ S C    +S      L +    +       GS+    ++ +     G V++  V
Sbjct: 771  LVSLRLSDCRLGSSSSTSLLLLSQCLEELHGVRSLMGSQDSVLIQTLAKMTPGMVLDLVV 830

Query: 883  HES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
             E   D  VV+S     D+    + +  AG  VE+G   +A IL V   E  V +SL   
Sbjct: 831  QEVLEDGSVVLSGGPVPDLVLRASRYHRAGQEVEAGQKRKAVILHVDMLELEVHVSLLKE 890

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
             +        NR+A+K K+ R+            A V+ ++E++ + SL E  H + ++ 
Sbjct: 891  LV--------NRKARKLKKGRK----------YQATVQHLEESFALASLVETGHLVAFSL 932

Query: 1002 VSDYN-TQKFPQKQFLNGQSVIATVMALPSSST----------AGRLLLLLKAISET--- 1047
             S  N T +F  ++   GQ V   +       T          A R+L   +  SET   
Sbjct: 933  ASHLNDTFRFDSEKLQVGQGVCLVLKTTEPGVTGLLLAVVGPAAQRVLRQTRKDSETVDD 992

Query: 1048 ----ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV 1103
                + +     +++ +  +G  V   +  +KP  + +    G  G IH + + DD   V
Sbjct: 993  DEEGDPALVTGLRRQHTLALGDTVTGTVKSVKPTHVVVTLEGGLVGCIHASHILDD---V 1049

Query: 1104 VENLF--SNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML----TVS 1148
            VE     +  K+GQ+VTAR+I     K++K  P     F+    ELSI+PS L    T  
Sbjct: 1050 VEGSMPTATLKVGQSVTARVIGGRDVKTSKFLPISHPRFIRTIPELSIRPSELEQGHTAL 1109

Query: 1149 EIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
            +  S    E+ +    GQ VT ++  Y V  +W  + I+  ++ ++ +L ++     L+ 
Sbjct: 1110 DTYSASPGEKIEHYQAGQTVTCFLKKYNVVKKWLEVDIAPDIRGRIPLLLASLSFKVLKH 1169

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
              ++F IG+A+   V+  +  +  L L L             I    ++    +G++  G
Sbjct: 1170 PDKKFQIGQALRATVVGPDSSRAFLCLSL-------------IGPHKLE----KGEVAMG 1212

Query: 1266 RISKILSGVGGLVVQIGPH--LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
            R           VV++ PH  L     F     + V      Y E    PL  +   + V
Sbjct: 1213 R-----------VVKVTPHKGLTVAFPFGRTGTVSVFHMSDSYSE---TPLEDFMPQKVV 1258

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            +C VL  +  +     + LSLR     +S TN  +  + V+ P   ++ ++D+    +++
Sbjct: 1259 RCYVLSTADHM-----LTLSLR-----LSRTN-PETKSKVEDP--EIDSMQDVKAGQLLR 1305

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLSVE 1437
            GYV+++   G  + L   +   V L+  S     SP K+       P G+L+  +VL + 
Sbjct: 1306 GYVQSIEPSGVLLGLGPSV---VGLAQFSHVSQSSPPKKDLYRKYLPEGRLLTAKVLRLN 1362

Query: 1438 PLSKRVEVTLKTSDS 1452
                 VE++   +D+
Sbjct: 1363 HNKNLVELSFLPTDT 1377



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 141/698 (20%), Positives = 260/698 (37%), Gaps = 104/698 (14%)

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETG 824
            HGY+ +I   G           F P+ KA +  R  +      VGQ +   I ++    G
Sbjct: 177  HGYLVDIGVEGT--------RAFLPQQKAQEYIRQKNKGAKLKVGQYLNCIIEEMKGNGG 228

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW-VEGFIIGSVIEGKVH 883
             + LS++QS  S+  A+                       E  W +   + G V++ +V 
Sbjct: 229  VVGLSIEQSEISTAIAT----------------------QEQNWNLNNLLPGLVLQAQVQ 266

Query: 884  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVE---SGSVIQAAILDVAKAERLVDLSLKT 940
            +   FG+ ++F   +   G +    L    V    S   ++A +L V    R V LSL+ 
Sbjct: 267  KVTQFGLTLNF--FTFFTGLVDFMHLDPKKVGMYFSNQTVRACVLCVHPRTRAVRLSLRP 324

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
            +F+   R              R + + LG       +     +      L   + ++ YA
Sbjct: 325  IFLQPGRPLT-----------RLSCQHLGAVLQDVPVQGFFNKAGATFRL--KDGALAYA 371

Query: 1001 SVSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK 1058
             +S  +  K  F  + F  G +    ++     S    L LL    S  E    K    K
Sbjct: 372  RLSHLSDSKNGFRPEAFKPGNTHKCRII---DYSQMDELALLSLRTSVIEAQYLKYHDIK 428

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
            +    G++++  +  IKP  + +K G    G +    + D     ++N    + +G  V 
Sbjct: 429  T----GAVIKGTVMTIKPFGMLVKVGEQMRGLVPAMHLADIP---MKNPEKKYHVGDEVK 481

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDN 1176
             R++     P+ KK  L   ++K +++T     SKL    C  D   G +  G + +V +
Sbjct: 482  CRVLL--CDPEAKKLIL---TLKKTLVT-----SKLPVITCYEDAKPGLQTHGAILRVKD 531

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
               ++     +  Q  +         + + ++ F++G+ V   VL+    ++ + L  + 
Sbjct: 532  YGCIVKFYNDV--QGLVPKHELSDQHIPDPEKVFYVGQVVKVAVLNCEPSRERMLLSFKL 589

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELK 1295
              D              +  I  G +V  +I  +     GL V + PH +   +    L 
Sbjct: 590  LSDPERKNGSVERRQKSKKAISVGQLVDVKI--LEKTKDGLHVAVLPHNIPAFLPTPHLS 647

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
            +   + PL       +  L   D                  T H  L L  S   +    
Sbjct: 648  DHVTNGPLL------YHWLQAGD------------------TLHRVLCLSQSEKQVLLCR 683

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
               L + V+  G+  +   ++ P M++ G+VK++   G F+     L      + +SD +
Sbjct: 684  KPALVSAVED-GQVPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKF 742

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453
            V +P   F  G+ V  +V  V+   +R+ V+L+ SD R
Sbjct: 743  VTNPSDHFVEGQTVVVKVTKVDEEKQRMLVSLRLSDCR 780


>gi|390357065|ref|XP_789726.3| PREDICTED: protein RRP5 homolog [Strongylocentrotus purpuratus]
          Length = 1841

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 379/1422 (26%), Positives = 645/1422 (45%), Gaps = 174/1422 (12%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD-----NEIEANED 180
            +T K +S GM +  VV E++E ++V+ LP G     +  D            NE    ED
Sbjct: 87   LTSKTLSEGMLVLAVVQEIHEYEIVLSLPNGQTAFVQITDVSSFFTQQLQELNESNGAED 146

Query: 181  NLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
              LP I   + VG LV C V  L   K   G R+I  SL    +   L +  ++ GM L 
Sbjct: 147  QDLPNIQDVYQVGNLVPCKVKSLGASKD--GHRRIQASLDYKEVNSELGISFIKAGMTLH 204

Query: 238  AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTRKV 293
              V S+EDHGY +  G+     FL +    + +    G  +K G L+  +V+++    + 
Sbjct: 205  GCVSSVEDHGYTIDLGIRGTNAFLAKEEATKGAKGRKGETMKTGKLVTCLVKAVKANGRS 264

Query: 294  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            + L+ DP+ +  C        +   L+PG  +   V  +L N +++     + G VD  H
Sbjct: 265  IILTFDPERLKSCKATKATHTTFSSLIPGTRLDAMVTKVLSNSLIMDIFGLYKGCVDPIH 324

Query: 354  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS-----HVKVG 408
            L++T    +    Y+  +K+ A +L+  PT++++GL+LNP        P+      +  G
Sbjct: 325  LKDT---VDELTKYDIGQKLVAVVLYNCPTTKSIGLSLNPAHHKTTFDPATDVIRDLSPG 381

Query: 409  DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC---VRV 465
            DI + + VVRV     L++ +   P  T   V  S  ++++    +K+Y   S    VR 
Sbjct: 382  DIIEAALVVRVQEKENLIVQL--NP-KTRGIVYHSHGSDDK----QKRYSPASVGEKVRC 434

Query: 466  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            RIL F   + LA   ++ S  +      +DVKPGM+VKG + +V S G  V+    +   
Sbjct: 435  RILSFNLFDRLAIVSMRKSILDKPFLGINDVKPGMLVKGVIESVMSRGVAVKIQDRIHGF 494

Query: 526  CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             P  H+++  + KP ++F +G+E+  RVL V+   +R+ +THKKT+VKS L  L+SYA+ 
Sbjct: 495  VPRTHLADIPVQKPQERFTIGSEIELRVLLVEPAKRRVLLTHKKTMVKSSLPFLASYAQP 554

Query: 584  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  HG +  ++  GC V FYN V+G  PR+ELG+D    P+  ++VGQV+KCR++ +
Sbjct: 555  KLGMWIHGCVVAVKDFGCIVSFYNDVKGIIPRAELGMDESSSPTDNFYVGQVLKCRVLRT 614

Query: 644  -IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
              P S+++ LS + K  R  E +  + G +V   +  V  + + V  +  G     IP  
Sbjct: 615  HSPESKKLALS-LRKDGR-KERESFEAGKIVKVKISKVKQDGLEVIQLP-GNKPAFIPKT 671

Query: 703  HLADHLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQ---QLPSDAS 757
            HL+DH +    + +    G   DQ L      +S   +++ K  L+N+A+   ++  D S
Sbjct: 672  HLSDHPDICDALLASYSEGDVIDQALTWSYSGKSRTCIVTCKPLLLNAARNKTEIVRDFS 731

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             +  N  + G + + +  G FV F   + G AP++   D   +D SK Y VGQ++R+ + 
Sbjct: 732  ELETNMFLIGVLRHTMSYGVFVEFPNHIVGLAPKAMMSDEFVSDTSKLYEVGQTLRAKVT 791

Query: 818  DVNSETGRITLSLKQSCCSSTDASF-----------------MQEHFLLEEKI-----AM 855
            +VN E  R  +SLK S C   DA                   +Q   ++  K+     A 
Sbjct: 792  EVNVEKKRFLVSLKTSDCFQDDAXXXXXXXXXXXXXXXXXQPLQFKHVISHKVGSLVHAT 851

Query: 856  LQSSKHNG------------------SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            ++++   G                   E K V    +GS++   V  +   G++ S    
Sbjct: 852  VRNTPGKGIICSLPHAVDAVIPQDHVHEFKHVISHKVGSLVHATVRSTPGKGIICSLPHA 911

Query: 898  SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
             D    I    + G + + G  I+A ++++  + + V LSLK   I+  +++ S  +  K
Sbjct: 912  VD--AVIPQDHVHGKSPKVGDSIEACVMNIDLSSKAVTLSLKPDTIEGCKKSKSKGKKGK 969

Query: 958  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 1017
            K     A +D G        V +VK  +++            A            KQ LN
Sbjct: 970  KAVASLA-EDKGK-------VLMVKSEFIL------------AQTGQGKLVYLSAKQHLN 1009

Query: 1018 GQSVIA-------TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD-----VGS 1065
              SV         TV    SS   GR L  L    +      K  K  + +D     VG 
Sbjct: 1010 NFSVQKDAIKIGDTVTIGDSSFVDGRFLAALVKEDKPSKKKEKERKSAAVHDTSQKLVGQ 1069

Query: 1066 LVQAEITEIKPLELRLKF--GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 1122
            +V A +  +K  ++ ++   G G+ GRIH TEV+D        L   F IGQ V A++I 
Sbjct: 1070 IVDAVVKSVKESQVNIEIEGGQGY-GRIHATEVSDTMKPGSYPL-EFFTIGQKVKAKVIG 1127

Query: 1123 AKSNKPDMKKSF--------LWELSIKPSMLTVSEIGSKLLFEECDVS---IGQRVTGYV 1171
             +  K     +         L ELS + S++    + S+    E +++   IGQ VT  +
Sbjct: 1128 CRRGKRGQHLAVSHGHGALSLLELSTRKSVMEADSVPSEDQSSENEMNAFQIGQTVTCII 1187

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
             +   E   + +SR L+ ++  L+ +   S L+  +  F  G+     V+  + E  +L 
Sbjct: 1188 NRFHKEILWVHLSRSLEGKIHRLNLSKHASTLENPESYFKPGQVHRAKVVRQDNEHNMLE 1247

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L +               +  + T    G +V  +++KIL       VQ+   L G +  
Sbjct: 1248 LSM---------------SGCIATTFEVGSVVNCKVTKILENKAQ--VQLPYGLQGSMFA 1290

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDG 1350
            T++ +I        Y E   +PL  ++  ++ +C + E S    G     +S+R S +  
Sbjct: 1291 TDIDDI--------YQE---NPLERFEHHKYHRCCISEAS---TGKHGASVSMRPSQVKK 1336

Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
             +  +  DL          +  ++DL    +V+GYV++ + KG F+ LS  L  ++LL  
Sbjct: 1337 ATPPSGYDL---------EIRTLDDLKKGQVVRGYVRHCSEKGVFVSLSSNLHGRILLKK 1387

Query: 1411 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            LS  YV+ P   F +GKL++ +VLS++  S ++E++  + D+
Sbjct: 1388 LSAFYVKDPSAVFTVGKLLSTKVLSIDKKSGKIELSSSSKDT 1429



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 127/285 (44%), Gaps = 43/285 (15%)

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS-DKTVDISNDNMQTFIHEGDIVGGRI 1267
            ++ IG+ +   VL      K + L L P     + D   D+  D     +  GDI+   +
Sbjct: 334  KYDIGQKLVAVVLYNCPTTKSIGLSLNPAHHKTTFDPATDVIRD-----LSPGDIIEAAL 388

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--FDPLSGYDEGQFVKC 1325
               +     L+VQ+ P   G V+ +            G D+ Q  + P S    G+ V+C
Sbjct: 389  VVRVQEKENLIVQLNPKTRGIVYHSH-----------GSDDKQKRYSPAS---VGEKVRC 434

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
            ++L  +   R      +S+R S+              +D P      I D+ P M+V+G 
Sbjct: 435  RILSFNLFDRLAI---VSMRKSI--------------LDKP---FLGINDVKPGMLVKGV 474

Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
            +++V S+G  + +  ++   V  ++L+D  V+ P++ F IG  +  RVL VEP  +RV +
Sbjct: 475  IESVMSRGVAVKIQDRIHGFVPRTHLADIPVQKPQERFTIGSEIELRVLLVEPAKRRVLL 534

Query: 1446 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            T K +  ++ S   + + +   +G  + G +  V+ +G  ++  N
Sbjct: 535  THKKTMVKS-SLPFLASYAQPKLGMWIHGCVVAVKDFGCIVSFYN 578


>gi|327267495|ref|XP_003218536.1| PREDICTED: protein RRP5 homolog [Anolis carolinensis]
          Length = 1816

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 387/1490 (25%), Positives = 682/1490 (45%), Gaps = 185/1490 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDDL 107
            FPRGG    TQ++R E +       + D  F+A    + +K KKK +          D+ 
Sbjct: 8    FPRGG----TQKKRQEGNTPRSQTIDQDNLFQAQNEEVTRKRKKKHQDQAEPKKLKSDER 63

Query: 108  GSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---A 164
             +L  +    +L      +T ++++ GM L G V E ++ +LVI LP GL G  +     
Sbjct: 64   AALKINAKDFEL------LTAESLTDGMLLLGCVKEAHQLELVISLPNGLTGFVQVTQIC 117

Query: 165  DALDPILDNEIEANED----NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL 220
            DA + IL+ ++  +E     + L  +F  G +V C V+ L+  K + G+R I LS+    
Sbjct: 118  DAYNKILNTQVATDEHLEDLSSLSDLFFPGMVVRCAVVNLE--KTKAGRRSIQLSVNPKD 175

Query: 221  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVK 275
            + K L+  T++ GM+L+  + S+EDHGY++  G+P+   FLPR        + N G ++K
Sbjct: 176  VNKALNSSTLRPGMLLSGCIASVEDHGYLIDIGVPAAKAFLPRQKAQGYLQSNNKGAELK 235

Query: 276  PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
             G  L  ++  +    +++ +S     ++  +  + +  S+  L+PG++V  +V+ +  +
Sbjct: 236  IGQYLNCLIEDVKNNGRIIRISISQAEIAAAIATEEQNWSLSNLLPGLVVKAQVREVTPS 295

Query: 336  GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
            G+ L FL+ FTG VD  H  +    T     Y+  + V A IL  +PT++A+ L+L P  
Sbjct: 296  GMSLGFLSSFTGIVDFMHKNHLKGRT-----YSPGEMVKACILSNNPTTKAIRLSLRPAF 350

Query: 396  LHNRAPPSHV---KVGDIYDQSKVVRV--DRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
            L      S +   ++G I + SKV       G   +LD  S   +   +++ S ++ +  
Sbjct: 351  LQPGTQLSQLCSDRIGMIVENSKVKTFLSKTGAIFVLDDGSLGFAHQKHLSDSRLSFKP- 409

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                +K+K G+  + RI+ +  ++ +A   LK +  +     + D+ PG V++G ++ + 
Sbjct: 410  ----EKFKPGNEHKCRIIEYSLMDDMALLSLKQNIMDAPFLKYQDIHPGQVLEGTILTLK 465

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
             FG  V+    +K L P  H+++  + +P KK+  GA +  RVL    ++++I +T KKT
Sbjct: 466  PFGMHVKLTEYIKGLVPCLHLADVPLKQPEKKYSEGASVKCRVLVSIPEARKIVLTLKKT 525

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV SKL IL+SY +A   LITHG++    + GC V+FYN ++G  P++ELGL P   P  
Sbjct: 526  LVNSKLPILASYEDAKPGLITHGFVVCAREFGCIVKFYNDIKGLVPKNELGLPPLTPPQE 585

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM----------------KPTRVSED----DLVK 668
            +++ GQVVK  ++   P   ++ LSF +                K  ++ E+    D+  
Sbjct: 586  VFYEGQVVKVMVLKCEPEQGKVLLSFNLTDNPLDKTGRGEKTSKKQEKIYENAQVADVKI 645

Query: 669  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
            L     G+   + PN +  Y          +P  HL+D++ H+ +    +K       ++
Sbjct: 646  LKKKDDGLDITILPNNISAY----------LPMMHLSDYVSHSKLWSHWLKEDDLLHSVV 695

Query: 729  VLDNESSNLLLSAKYSLINSAQQLPS--DASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
             L ++  +L LS K +L+ +AQ+  +  + S + P  ++ G+V NI+  G FV F   LT
Sbjct: 696  CLHSKGRHLTLSRKPTLVLAAQEEHAVKNFSDLEPGLLLTGFVKNIMPYGVFVEFPYGLT 755

Query: 787  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA-----S 841
            G AP+S   D    D    + +GQ+V + + +++ E  RI LSLK S CSS D+     S
Sbjct: 756  GMAPKSAMSDKFVTDTKDHFVIGQTVIAKVTNIDEEKQRILLSLKLSDCSSEDSVSQSFS 815

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
             + ++F   ++I  +   + + S  + +        +E  VH+    G  V     +D  
Sbjct: 816  LLLQYFKELQEIKSIMKKRDDSSVAQRLCEIKPAQKLELVVHKVETDGSAVFRGTCADGL 875

Query: 902  GFI-THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
              +  H  L G  V  G   +A +L        +D     +++    E  S++       
Sbjct: 876  TVVAAHSHLGGKNVAVGEKAEAVVL-------YIDYLKAKIYVSLREELLSSK------- 921

Query: 961  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQ 1019
                 K L +     AIV+ V   Y V SL      I     S +N T +F  ++   GQ
Sbjct: 922  ----PKKLTLDSQYEAIVQHVATEYSVASLIGTGQLIAIPVTSHFNDTFRFDSEKLKMGQ 977

Query: 1020 SVIATVMA--------LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
            SV+  +          L +    G+ +  +++  ++E         K S  VG +V+  +
Sbjct: 978  SVMVVLKMVERGDYGLLLAVQAPGKRMTAIRSRRDSEALEETLPTVKHSLCVGDVVKGTV 1037

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF--SNFKIGQTVTARIIA----KS 1125
              +KP  + +       G IH +++ DD   V E  F  S  K+GQ VTAR+I     ++
Sbjct: 1038 KSVKPTHVLVAIDDHLMGSIHASQIVDD---VFEGTFPTSLLKVGQKVTARVIGGREIRT 1094

Query: 1126 NK--PDMKKSF--LW-ELSIKPSMLTVSEIGSKLLFEECDVS--------IGQRVTGYV- 1171
            ++  P     F   W ELS++PS L        +L  E D S         GQ VT +V 
Sbjct: 1095 HRYLPITHPHFTQTWPELSVRPSELKGE--NKTVLGPEDDKSEETLKLFKPGQTVTCFVK 1152

Query: 1172 -YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
             Y  + +W  + ++  ++ ++  L  + +P  L++    F  G+A+   V   +     +
Sbjct: 1153 KYNTEKKWLEVEVTPDIRGRIHELLLSLKPKILKKPGNFFKTGQALIATVTGCDTTGTKV 1212

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L L     G+               + +G I  G I  ++  V GL V +     G+V 
Sbjct: 1213 YLSL----SGVYS-------------LEKGTITLGCIKSVIPHV-GLQVTLPFGRTGKVS 1254

Query: 1291 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL-EISRTVRGTFHVELSLRSSLD 1349
               L +         Y E    PL  +  G+ V+C VL +  +T++      LSLR S  
Sbjct: 1255 LFHLSD--------SYTE---QPLEDFSVGKIVRCYVLSDEDKTIK------LSLRQSRV 1297

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
               S N       ++ P   +  ++++  + +++GYVK++T+ G    LS  +   + L 
Sbjct: 1298 SPKSHNK------IEDP--EIASLDNIKKDQLIRGYVKSITATGILFRLSDSVVGCIPLQ 1349

Query: 1410 NLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
             ++   V       K    G+L+  +V S+      VE++L   D+   S
Sbjct: 1350 RITPVCVPDHSLCAKYIHPGQLLTAKVFSINKAENLVELSLLPEDTGNPS 1399



 Score = 47.8 bits (112), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 36/261 (13%)

Query: 1262 IVGGR---ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1318
            ++GGR     + L        Q  P L  R    + +N  V  P    D+   + L  + 
Sbjct: 1086 VIGGREIRTHRYLPITHPHFTQTWPELSVRPSELKGENKTVLGP---EDDKSEETLKLFK 1142

Query: 1319 EGQFVKCKV-----------LEISRTVRGTFH-VELSLRSSL----DGMSSTNSSDLST- 1361
             GQ V C V           +E++  +RG  H + LSL+  +         T  + ++T 
Sbjct: 1143 PGQTVTCFVKKYNTEKKWLEVEVTPDIRGRIHELLLSLKPKILKKPGNFFKTGQALIATV 1202

Query: 1362 -DVDTPGKH----LEKIEDLSPNMIVQGYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGY 1415
               DT G      L  +  L    I  G +K+V    G  + L      KV L +LSD Y
Sbjct: 1203 TGCDTTGTKVYLSLSGVYSLEKGTITLGCIKSVIPHVGLQVTLPFGRTGKVSLFHLSDSY 1262

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLSNLHVGD 1470
             E P ++F +GK+V   VLS E   K ++++L+ S     S +     EI +L N+    
Sbjct: 1263 TEQPLEDFSVGKIVRCYVLSDE--DKTIKLSLRQSRVSPKSHNKIEDPEIASLDNIKKDQ 1320

Query: 1471 IVIGQIKRVESYGLFITIENT 1491
            ++ G +K + + G+   + ++
Sbjct: 1321 LIRGYVKSITATGILFRLSDS 1341


>gi|348532680|ref|XP_003453834.1| PREDICTED: protein RRP5 homolog [Oreochromis niloticus]
          Length = 1805

 Score =  388 bits (996), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 355/1454 (24%), Positives = 675/1454 (46%), Gaps = 139/1454 (9%)

Query: 54   FPRGGGHSLTQRERDEIH-AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
            FPRGG    +   +  +H  E D  F++ E+   KK K   K   +K  +   +   +  
Sbjct: 8    FPRGGTAKKSTGSKTVVHRTEADNLFQSNEQTETKKRKAGAKDDSKKLKKQKAEEKKV-- 65

Query: 113  DGISGKLP-RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
             G++   P +    + +K++  GM + G V EV + ++ + LP GL+G   +    D+  
Sbjct: 66   -GLTLNAPVKCVEILHVKDVKEGMLMLGCVKEVTDFEVTVSLPSGLQGFLSIKNICDSYT 124

Query: 169  PILDNEIEANEDN---LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
             +L  ++++ +      LP +F+ G ++ C+V +LD  K+  G   I LS+   L+ K L
Sbjct: 125  KLLSEQLDSTDTEEICSLPHLFYPGMVLRCVVAKLDVTKR--GSLSIQLSINPKLVNKNL 182

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA--ENSGIDVKPGLLLQGV 283
            +   ++ GMVL+A V+S+ED+GYI+  G+     FL + +L    N+  ++K G  L   
Sbjct: 183  TPSALKTGMVLSACVESVEDYGYIIDIGVSGTKAFLSKESLKFKHNNAQELKVGQYLTSQ 242

Query: 284  VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
            V  +    +VV LS++  T+++   +  +G ++  L+PG++V   ++ + ++G++L FL+
Sbjct: 243  VEEVKNDGRVVQLSANLTTIAQTCAEPKQGWNLTTLLPGLLVKATIKEVTKHGLILDFLS 302

Query: 344  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----N 398
             F G VD  H++         + Y +  KVNAR+L+++P +R VG++L  +L+H     +
Sbjct: 303  SFNGQVDFLHME-----PEQASSYTKGLKVNARVLYIEPQTRLVGMSLRSHLIHLETGID 357

Query: 399  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY- 457
              P    ++G++  + K+  +    G +L++P     T A+V  + + E      E +  
Sbjct: 358  PVPAGGERIGEVVKECKMTAMHHLSGGVLELPD---KTLAFVHRNHLKESNEEANENRVF 414

Query: 458  --KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               E +C   RIL F  +E +    L+ S      + + D++ G VV+G V  + S G +
Sbjct: 415  AQPEHTC---RILDFSPMEQIHFATLRRSVIGKPFYRYHDLQAGQVVEGTVSVLLSHGMV 471

Query: 516  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 573
            V     +K L P  H+S+  +  P KK+  G ++  RVL V  ++K++ +T KKTLV+S 
Sbjct: 472  VHLSDHIKGLVPRTHLSDIVLQNPEKKYMEGMKVKCRVLSVDAENKKLYLTRKKTLVESS 531

Query: 574  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
            L +  SY +     ++HG+I  ++  GC VRFYNGV+G  P SEL  +P   P  +++VG
Sbjct: 532  LPLFLSYNDTRPGRVSHGYIVSVKDFGCIVRFYNGVKGLVPLSELSSEPIVRPGDIFYVG 591

Query: 634  QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVTPNAVVVY 688
            QVVK +++   P   ++ LSF     + +E+        ++G  +   V   + N + V 
Sbjct: 592  QVVKAKVLQCDPEKGKMVLSFKAVGEKENEETEKPEFDCEVGKRLDAKVLKKSLNGLEVA 651

Query: 689  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS 748
            ++     +  +P  HL+DH+ +  ++   ++ G    +L+       NL L+ K ++  S
Sbjct: 652  ILPDEI-RAVLPMIHLSDHMSNCPLLWESLQEGDIISKLICSSKNKQNLTLTKKPTVRWS 710

Query: 749  AQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
             ++  +  D S I     + G++ NI+  G FV F   L G AP+S   D    D + ++
Sbjct: 711  LEEGVVAKDFSEITVGLQLVGWIKNIMSYGVFVEFPYGLVGLAPKSAMTDKFIRDATNSF 770

Query: 807  YVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASF-----MQEHFLLEEKIAMLQSS 859
             VGQ+V + + +++ E  R  +TL + +      DA       +QE   + E + +    
Sbjct: 771  QVGQTVIAKVTNLDEEKRRFLVTLKISEVISPQGDAQTRLINGLQERRAVTEMLVL---- 826

Query: 860  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV 919
            K N    + +    +G  ++  V   ND G     +           H + G  +  G  
Sbjct: 827  KDNSELQQQLAALSVGQKLKLTVDTVNDTGARFKSDGLIGATILANKHHMMGVKLTEGQK 886

Query: 920  IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
            + A +L V      V +S+ +  +             KKK   E  K         A+V+
Sbjct: 887  VGAVVLHVDMLSACVHVSILSKLMG------------KKKSLAEGLKH-------TAMVQ 927

Query: 980  IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAG-RL 1037
             + +++ V+SL +        + S  N     + + L  G ++ A V+        G  L
Sbjct: 928  YIDKDFAVISLGDTAQLTVIQTYSHLNEIFLSESEKLKVGMTLSAEVIEPSCQELQGLPL 987

Query: 1038 LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 1097
            +   +++ E + ++S+    +  +  G ++Q  +  +KP  +++    G  G +H++EV 
Sbjct: 988  VSWERSMPERKRTASENQTGRKGHCFGEILQGTVRTVKPTCIQVTLEDGSSGSVHVSEVV 1047

Query: 1098 DDKSNVVENL-FSNFKIGQTVTARII----AKSNK--PDMKKSFLW---ELSIKPSMLTV 1147
            +     + +   S+ K+G  VTAR+I    A S++  P     F +   EL++ PS L  
Sbjct: 1048 EPAEVRLGSFPTSSVKVGSVVTARVIGGREASSHRFLPFSHPKFTYTISELTLIPSKLNE 1107

Query: 1148 SEIGSKLLFEE--CDVSIGQRVTGYVYKVDNEWALLTISR--HLKAQLFILDSAYEPSEL 1203
            S     +  +E       G+ +T +V K +++   L ++    +   + +L    +P ++
Sbjct: 1108 SVDFKPVTAKEKLSSYKAGEEITCFVSKFNSDRKSLEVTTDPSVTGTVELLAMTTDPKDI 1167

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
               ++   +G+AV   V+ ++       L L     G+               + +G I 
Sbjct: 1168 GHPEKLHKLGQAVRARVVEVSFTPHRFVLSL----TGVHK-------------LEKGSIT 1210

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G ++ I    G LV         ++ F  +  + V+D    Y   + +PL+ Y++ QF+
Sbjct: 1211 LGIVTNIQPQTGLLV---------KLPFGGMGTVAVTDLADAY---RPNPLAVYNKDQFL 1258

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE--KIEDLSPNMI 1381
            +C +L+           +LSLR           S L+ +   P K  E   +  L    I
Sbjct: 1259 RCYLLDNEND-----KWQLSLR----------PSRLNPEKAKPAKDPEVLSVNKLKAGQI 1303

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEP 1438
            ++GYVK+V  +G FI LSR +  +  L   +  +V++ +   +  P   L+  ++LS++ 
Sbjct: 1304 IRGYVKSVGEQGVFIRLSRSIIGRAELQQTTKYFVKNHKIVSEHLPPNTLLTTKILSIDE 1363

Query: 1439 LSKRVEVTLKTSDS 1452
              + + ++L   D+
Sbjct: 1364 EEEFINLSLLPEDT 1377



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 162/404 (40%), Gaps = 68/404 (16%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G LV+A I E+    L L F   F+G++    +  +++       S++  G  V AR++ 
Sbjct: 281  GLLVKATIKEVTKHGLILDFLSSFNGQVDFLHMEPEQA-------SSYTKGLKVNARVLY 333

Query: 1124 KSNKPDMK----KSFL--WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1177
               +  +     +S L   E  I P       IG   + +EC ++    ++G V ++ ++
Sbjct: 334  IEPQTRLVGMSLRSHLIHLETGIDPVPAGGERIGE--VVKECKMTAMHHLSGGVLELPDK 391

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
                    HLK      +S  E +E + F +  H     T  +L  +  +++    LR  
Sbjct: 392  TLAFVHRNHLK------ESNEEANENRVFAQPEH-----TCRILDFSPMEQIHFATLR-- 438

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
               +  K     +D     +  G +V G +S +LS   G+VV +  H+ G V  T L +I
Sbjct: 439  -RSVIGKPFYRYHD-----LQAGQVVEGTVSVLLSH--GMVVHLSDHIKGLVPRTHLSDI 490

Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTN 1355
             + +P   Y EG             VKC+VL +    +  +    +  + SSL    S N
Sbjct: 491  VLQNPEKKYMEGMK-----------VKCRVLSVDAENKKLYLTRKKTLVESSLPLFLSYN 539

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
                               D  P  +  GY+ +V   GC +     +   V LS LS   
Sbjct: 540  -------------------DTRPGRVSHGYIVSVKDFGCIVRFYNGVKGLVPLSELSSEP 580

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
            +  P   F +G++V  +VL  +P   ++ ++ K    +   ++E
Sbjct: 581  IVRPGDIFYVGQVVKAKVLQCDPEKGKMVLSFKAVGEKENEETE 624


>gi|335310117|ref|XP_001926809.2| PREDICTED: protein RRP5 homolog [Sus scrofa]
          Length = 1863

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 402/1481 (27%), Positives = 671/1481 (45%), Gaps = 183/1481 (12%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
            FPRGG   + + E+  +   E D  F+     +  + +  K+K  +K   T+  L +   
Sbjct: 8    FPRGGTRKIRKSEKTLQQSVEQDNLFD-----ISTEEESTKRKKSQKEPATIKKLKT--D 60

Query: 113  DGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL 171
               S K  R   +I   +++  GM++ G V EVNE +LVI LP GL+G  +  +  D   
Sbjct: 61   KRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT 120

Query: 172  D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG 224
               NE  A E+ L     LP +F  G LV C+V  L   K   GK+ + LSL    + K 
Sbjct: 121  KKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKV 178

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
            L+ E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N    +K G  
Sbjct: 179  LNPEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQY 238

Query: 280  LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
            L  +++ +  +  VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G+ L
Sbjct: 239  LNCIIQEVKGSGGVVSLSIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTL 298

Query: 340  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
             FL++FTG VD  HL      T + N     + V A +L V P +R V L+L P  L   
Sbjct: 299  KFLSFFTGLVDFMHLDPKKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPG 353

Query: 400  APPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
             P + +   ++G + +   V       G    +      T AY   + ++  +     + 
Sbjct: 354  RPLTGLSCQQLGAVLEDVPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPET 410

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
            +K G+  + RI+ +  ++ +    L+ S  E     + D+KPG +VKGKV+ +  +G +V
Sbjct: 411  FKPGNIHKCRIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLV 470

Query: 517  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
                 ++ L P  H+++  +  P KK+ VG E+  RVL    ++KR+ +T KKTLV+SKL
Sbjct: 471  NMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKL 530

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
              ++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P +     Q
Sbjct: 531  PAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPETGVVSCQ 590

Query: 635  VVKCRIMSSIPASRRINLSFMMK--PTRVSEDDLVK------LGSLVSGVVDVVTPNAVV 686
            VVK  +++  P+  ++ LSF +   P + SE    K       G LV   V   T + + 
Sbjct: 591  VVKVVVLNCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLE 650

Query: 687  VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
            V V+     +  +PT HL+DH+ ++ ++   ++ G    ++L L      +LL  K +L+
Sbjct: 651  VAVLPHNI-RAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEGRVLLCRKPALV 709

Query: 747  NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            ++ +  Q P   S IHP  ++ G+V +I + G F++F   L+G AP++   D      S 
Sbjct: 710  SAVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSD 769

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCS----STDASFMQEHFLLEEKIAMLQSSK 860
             +  GQ+V + + +V+ E  R+ LSL+ S C+    +T +  +    L E++      S 
Sbjct: 770  HFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSN 829

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESG 917
             +   ++ +     G V++ +V E  + G V+ F E   V G +   + +  AG  VESG
Sbjct: 830  RDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESG 887

Query: 918  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
               +  IL+V   +  V +SL+   +        NR+ +K ++  E            A+
Sbjct: 888  QKKKVVILNVDMLKLEVHVSLRRDLV--------NRRTKKLRKGGE----------YQAV 929

Query: 978  VEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
            V+ ++E + V SL E  H   ++  S  N T +F  ++   GQ V  T+       T   
Sbjct: 930  VQHLEETFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVTG-- 987

Query: 1037 LLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEIKPL 1077
            LLL ++  +   T    R                     KK +  +G +V   +  IKP 
Sbjct: 988  LLLAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPT 1047

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL- 1135
             + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      DMK   FL 
Sbjct: 1048 HVVVTLEDGIVGCIHASHILDD-VPVGTSPTTKLKVGKKVTARVIGGR---DMKTFKFLP 1103

Query: 1136 ----------WELSIKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNE 1177
                       ELS++PS L     T     S    E+      GQ VT ++  Y V  +
Sbjct: 1104 ISHPRFIRTIPELSVRPSELKEDGHTALNTHSVSPLEKIKQYKAGQTVTCFLKKYNVVKK 1163

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            W  + I+  ++ ++ +L  +     L+   ++F IG+A+   V+  +  K  L L L   
Sbjct: 1164 WLEVEIAPDIRGRIPLLLMSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAFLCLSL--- 1220

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
                      I    M+    +G++  GR+ K+ +   GL+V       G+V+       
Sbjct: 1221 ----------IGPHKME----KGEVAMGRVVKV-TPKEGLMVSFPFGKIGKVNI-----F 1260

Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
             VSD  S                    C VL  +  V     + LSLRS     S TN  
Sbjct: 1261 HVSDSFSE------------------TCYVLSNAGPV-----LTLSLRS-----SRTNPD 1292

Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1417
              S  VD     +   +D+    +++GYVK++   G  + L   +      S++S     
Sbjct: 1293 TKSKIVDP---EINSTQDIEEGQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHVSQ---H 1346

Query: 1418 SP------EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            SP      +K  P GKL+  +VLS+      VE++    D+
Sbjct: 1347 SPTRNALYDKYLPEGKLLTAKVLSLNRRENLVELSFLPGDT 1387



 Score = 41.2 bits (95), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            G+  +   ++ P M++ G+V+++   G FI     L      + +SD +V S    F  G
Sbjct: 715  GQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEG 774

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
            + V  +V +V+   +R+ ++L+ SD     Q+
Sbjct: 775  QTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQA 806


>gi|194378984|dbj|BAG58043.1| unnamed protein product [Homo sapiens]
          Length = 1299

 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 333/1163 (28%), Positives = 556/1163 (47%), Gaps = 116/1163 (9%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGPTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGARAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P+  S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSCDPEPKKEPSGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ ++++  + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSLAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKGTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML 1145
            +             ELS++PS L
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSEL 1125



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 143/701 (20%), Positives = 265/701 (37%), Gaps = 114/701 (16%)

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETG 824
            HGY+ +I   G           F P  KA +  R  +      VGQ +   +  V    G
Sbjct: 200  HGYLVDIGVDGA--------RAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGG 251

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW-VEGFIIGSVIEGKVH 883
             ++LS+  S  S+  A+  Q                       W +   + G V++ +V 
Sbjct: 252  VVSLSVGHSEVSTAIATEQQS----------------------WNLNNLLPGLVVKAQVQ 289

Query: 884  ESNDFGVVVSFEEH-SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 942
            +   FG+ ++F    + V  F+        T  S   ++A IL V    R+V LSL+ +F
Sbjct: 290  KVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTYFSNQAVRACILCVHPRTRVVHLSLRPIF 349

Query: 943  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV 1002
            +   R              R + ++LG       +    K+      L   +  + YA +
Sbjct: 350  LQPGRPLT-----------RLSCQNLGAVLDDVPVQGFFKKAGATFRL--KDGVLAYARL 396

Query: 1003 SDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
            S  +  K  F  + F  G +    ++   S      LL L  +I E +        +   
Sbjct: 397  SHLSDSKNVFNPEAFKPGNTHKCRIIDY-SQMDELALLSLRTSIIEAQYL------RYHD 449

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
             + G++V+  +  IK   + +K G    G +    + D    +++N    + IG  V  R
Sbjct: 450  IEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD---ILMKNPEKKYHIGDEVKCR 506

Query: 1121 IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEW 1178
            ++     P+ KK  +   ++K ++     I SKL    C  D   G +  G++ +V +  
Sbjct: 507  VLL--CDPEAKKLMM---TLKKTL-----IESKLPVITCYADAKPGLQTHGFIIRVKDYG 556

Query: 1179 ALLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
             ++    +++  +    L + Y P      +R F+ G+ V   VL+    K+ + L  + 
Sbjct: 557  CIVKFYNNVQGLVPKHELSTEYIPDP----ERVFYTGQVVKVVVLNCEPSKERMLLSFKL 612

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELK 1295
              D    K     +      I+ G +V  ++  +     GL V + PH +   +  + L 
Sbjct: 613  SCDPEPKKEPSGHSQKKGKAINIGQLVDVKV--LEKTKDGLEVAVLPHNIRAFLPTSHLS 670

Query: 1296 NICVSDPLSGYDEGQFDPLS-----GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
            +   + PL  +     D L         EG+ + C+   +  TV G              
Sbjct: 671  DHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEG-------------- 716

Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
                            G+  +   ++ P M++ G+VK++   G FI     L      + 
Sbjct: 717  ----------------GQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAI 760

Query: 1411 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
            +SD +V S    F  G+ VA +V +V+   +R+ ++L+ SD
Sbjct: 761  MSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 801



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 56/286 (19%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1327
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1328 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1387
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1388 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1448 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN 563


>gi|395502216|ref|XP_003755479.1| PREDICTED: protein RRP5 homolog [Sarcophilus harrisii]
          Length = 1865

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 373/1402 (26%), Positives = 638/1402 (45%), Gaps = 158/1402 (11%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--D 180
            ++++ ++ GM+L G V E+N  +LVI LP GL G  +A   +DA    L  +++  E  +
Sbjct: 75   LSIEALTEGMRLLGCVKEINNLELVISLPNGLWGYVQATNISDAYTKKLSEQLDQEEPLE 134

Query: 181  NLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 238
            +L P   +F  G LV C+V  +    K   K+ + LSL    + + LS  +++ GM+LT 
Sbjct: 135  DLAPLSELFPPGLLVRCVVSSITSASK---KKSVKLSLNPKDVNRVLSPASLKPGMLLTG 191

Query: 239  YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
             V S+EDHGY++  G+     FLP     E     N G  ++ G  L  ++  +      
Sbjct: 192  TVHSVEDHGYLVDIGVMGTKAFLPWQKEQEYVKQKNKGTKLRVGQYLNCLIEEVKGNGGS 251

Query: 294  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            V LS+    VS  +  + +  ++D L+PG++V  +VQ +  +G+ LSF + FTG VD  H
Sbjct: 252  VLLSTIQSVVSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPHGLTLSFFSSFTGLVDFMH 311

Query: 354  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS---HVKVGDI 410
            L      +     Y Q + V A IL V P ++ V LTL    L    P +   H  +G +
Sbjct: 312  LD-----SKKAGHYFQTQMVRACILSVHPRTKCVRLTLRSSFLQAGRPITRLCHNLIGAV 366

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
             +   V       G    +    +   AY  I  +++ E     +K+K G+  + R++ +
Sbjct: 367  LNDVPVQGFFAKAGATFRLKDGSL---AYARIMHLSQTEKSFKPEKFKPGNMHKCRVIDY 423

Query: 471  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
              ++ LA   LK S  E     + D+ PG VVK KV A+ S+G IV+    +K L P  H
Sbjct: 424  SPMDDLALLSLKTSIIEAPFLRYHDLHPGQVVKAKVFALRSYGMIVKVTEQIKGLVPTLH 483

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
            +++ +I  P KK+++  E+  RVL    ++K++ +T KKTLV+S L  L+SY +A   L 
Sbjct: 484  LADVQIRNPQKKYRLQDEVKCRVLTCDPENKKLLMTLKKTLVESNLPALTSYKQAKPELQ 543

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            THG+I+ I+  GC V+FYN V+G  P+ ELG  P   P  +++VGQVVK  +++S P   
Sbjct: 544  THGFISSIKDSGCVVKFYNDVRGLVPQRELGAQPISTPGEVFYVGQVVKVTVLNSEPEQE 603

Query: 649  RINLSFMM-------KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
            R+ LSF +        P +  +   +K+G LV   V   T   + V ++     +  +PT
Sbjct: 604  RMLLSFRLLSDKETEGPAQSQKKATIKVGQLVDVKVKKKTEKGLEVSILPNNI-RALLPT 662

Query: 702  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
             HL+D + ++ ++ S ++ G    ++L L +   +++L  K +LI++ +  Q P   S  
Sbjct: 663  THLSDSVNNSQLLYSWLRAGDVLHRVLCLSHSDGHIILCRKPALISAVESGQDPKVFSEF 722

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
             P  ++ G+V  I   G FV+F   L+G AP+S   D     +S  +  GQ+V + + +V
Sbjct: 723  QPGMLLTGFVKTIKAYGVFVQFPSGLSGLAPKSALSDKFVTTVSDHFVEGQTVVAKVTNV 782

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFL---LEE--KIAMLQSSKHNGSELKWVE---G 871
              E  R+ LSL+ S     D +      L   LEE   +  L SS+ +       E   G
Sbjct: 783  YEEKERMLLSLRLSDVCQEDTAVSSLALLSQWLEELQGVRSLMSSRDSMLTQTLAEITPG 842

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI----THHQLAGATVESGSVIQAAILDV 927
             ++  V++     S+D  ++ S      V G +     +HQ  G  ++ G   +A +L V
Sbjct: 843  LLMDLVVQDM---SSDGSLMFS---SGSVPGLVLKASRYHQ-GGKVMDPGQRTKAVVLHV 895

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 987
               +  V +SL+   ++R      ++Q +K    R             A++E +++ + +
Sbjct: 896  DTLKSEVHVSLRQELVNR-----KSKQLKKNTEHR-------------AVIEHLEKTFAI 937

Query: 988  LSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVM-ALPS---------SSTAGR 1036
             SL E    + +   S  N T +F  ++   GQ V   +  A PS         SS   R
Sbjct: 938  GSLMETGQLVAFPVTSHLNDTFRFDSEKLQVGQRVSLIIKSAKPSDIGLFLAVESSVKKR 997

Query: 1037 LLLLLKAISET---ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
               L  A  E    E        +K +  +G +V   +  +K   + +    G  G IH 
Sbjct: 998  TPALPLADPEPAGEEPGVMSSLLEKPTLPIGEMVTGTVKSVKATHVVVTLENGLVGCIHA 1057

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
            +++ DD     +   +  K+G+ VTAR+I +      K      +S   S  TVSE+  +
Sbjct: 1058 SQILDDVPLGTQPT-AKLKVGKPVTARVIGQRTLLTHKT---LPISHPSSAQTVSELSIR 1113

Query: 1154 LLFEECDVSI------------------GQRVTGYVYKVD--NEWALLTISRHLKAQLFI 1193
                E D+SI                  GQ V  ++ K +   +W  + I+  ++ ++  
Sbjct: 1114 SSELEKDISIDPSTHCSSPTEKLKQYLPGQTVICFMRKFNVIKKWLEVEITPDIRGRIPQ 1173

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            L ++     L+  +++F IG+A++  V+     K  L L L             I    +
Sbjct: 1174 LLTSLSFKVLKHPEKKFKIGQALSATVVGPESSKGFLTLSL-------------IGPHRL 1220

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1313
            +    EG++  GR+ K++    GL V       G+V    L +         Y E    P
Sbjct: 1221 E----EGEVAMGRVVKVIPK-EGLQVLFPFGTIGKVSIFHLSD--------SYLEA---P 1264

Query: 1314 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1373
            L G+   + V+C VL     V     + LSLR      S TN   +   ++ P   +  I
Sbjct: 1265 LEGFHPEKIVRCCVLSTKDPV-----LTLSLRQ-----SRTNPR-MKNKIEDP--EVNSI 1311

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVA 1430
            +++     ++GYV+ V   G    +   L  +V   +++  ++          P GKL++
Sbjct: 1312 KNIKEGQHLRGYVEAVKKLGVHFRIGPTLVGRVKYRHVTKYFLSDKTLYRTYLPEGKLLS 1371

Query: 1431 GRVLSVEPLSKRVEVTLKTSDS 1452
             +VL +    K V ++    D+
Sbjct: 1372 AKVLRLNRKQKLVYLSFLPKDT 1393



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 151/692 (21%), Positives = 270/692 (39%), Gaps = 96/692 (13%)

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            C   D S M +  LL  K +++++      +L        G V++ KV     +G++V  
Sbjct: 418  CRVIDYSPMDDLALLSLKTSIIEAPFLRYHDLH------PGQVVKAKVFALRSYGMIVKV 471

Query: 895  EEHSDVYGFITHHQLAGATVESGSV-------IQAAILDVAKAERLVDLSLKTVFIDRFR 947
             E   + G +    LA   + +          ++  +L      + + ++LK   ++   
Sbjct: 472  TEQ--IKGLVPTLHLADVQIRNPQKKYRLQDEVKCRVLTCDPENKKLLMTLKKTLVESNL 529

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
             A ++         ++A  +L  H  +++I    K++  V+    YN   G     +   
Sbjct: 530  PALTSY--------KQAKPELQTHGFISSI----KDSGCVVKF--YNDVRGLVPQRELGA 575

Query: 1008 QKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
            Q    P + F  GQ V  TV  L S     R+LL  + +S+ ET    +++KK++  VG 
Sbjct: 576  QPISTPGEVFYVGQVVKVTV--LNSEPEQERMLLSFRLLSDKETEGPAQSQKKATIKVGQ 633

Query: 1066 LVQAEITEIKPLELRLKFGI---GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            LV  ++   K  E  L+  I        +  T ++D  +N  + L+S  + G  V  R++
Sbjct: 634  LVDVKVK--KKTEKGLEVSILPNNIRALLPTTHLSDSVNNS-QLLYSWLRAGD-VLHRVL 689

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
              S+           L  KP++++  E G    +F E     G  +TG+V  +      +
Sbjct: 690  CLSHSDGH-----IILCRKPALISAVESGQDPKVFSE--FQPGMLLTGFVKTIKAYGVFV 742

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
                 L        SA     +      F  G+ V   V ++ +EK+ + L LR   D  
Sbjct: 743  QFPSGLSG--LAPKSALSDKFVTTVSDHFVEGQTVVAKVTNVYEEKERMLLSLR-LSDVC 799

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
             + T   S   +  ++ E   V   +S   S +   + +I P L   +   ++ +     
Sbjct: 800  QEDTAVSSLALLSQWLEELQGVRSLMSSRDSMLTQTLAEITPGLLMDLVVQDMSSDGSLM 859

Query: 1302 PLSGYDEGQFDPLSGY-------DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
              SG   G     S Y       D GQ  K  VL +  T++   HV  SLR  L    + 
Sbjct: 860  FSSGSVPGLVLKASRYHQGGKVMDPGQRTKAVVLHVD-TLKSEVHV--SLRQEL---VNR 913

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             S  L  + +    H   IE L     +             +M + +L A  + S+L+D 
Sbjct: 914  KSKQLKKNTE----HRAVIEHLEKTFAIGS-----------LMETGQLVAFPVTSHLNDT 958

Query: 1415 YVESPEKEFPIGKLVA-----------GRVLSVEPLSKRVEVTLKTSDSRTASQ-----S 1458
            +    EK   +G+ V+           G  L+VE   K+    L  +D   A +     S
Sbjct: 959  FRFDSEK-LQVGQRVSLIIKSAKPSDIGLFLAVESSVKKRTPALPLADPEPAGEEPGVMS 1017

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             +     L +G++V G +K V++  + +T+EN
Sbjct: 1018 SLLEKPTLPIGEMVTGTVKSVKATHVVVTLEN 1049


>gi|410918265|ref|XP_003972606.1| PREDICTED: protein RRP5 homolog [Takifugu rubripes]
          Length = 1767

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 349/1369 (25%), Positives = 628/1369 (45%), Gaps = 161/1369 (11%)

Query: 128  LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIE-ANEDNL- 182
            +KN+  GM L G V +V + ++ + LP GL+G   +   +D+   +L  +++ A+ +++ 
Sbjct: 82   IKNVREGMLLLGCVKDVADFEVTVSLPCGLQGFLSIRNISDSYTKMLSEQLDSADMEDIC 141

Query: 183  -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
             LP +   G +V C V +LD  K   G   I LS+   L+ K L+  ++  GMVL+  V+
Sbjct: 142  SLPDLLCPGMIVRCAVAKLDTSKG--GNLSIQLSINPKLVNKALTTSSLNAGMVLSGCVE 199

Query: 242  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            S+EDHGYI+  G+     FLP+     N+  D+K G  +   V ++    +VV LS    
Sbjct: 200  SVEDHGYIVDIGIKGTNAFLPKKK-GPNNQEDLKVGQYVTSTVEAVKNEGRVVRLSVSQL 258

Query: 302  TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
              S+   +  +G ++  L+PG++V+  ++ + ++G+ +SFL+ FTG VD  H++      
Sbjct: 259  NSSQACIRSTQGWNLTNLLPGLLVNATIKKVTKHGLSVSFLSSFTGQVDFLHME-----P 313

Query: 362  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKV 416
               + Y +  +V A +L+V+P++R V L+L  YLL      +  PP   +VG++    K+
Sbjct: 314  KEASSYKEGDEVRACVLYVEPSTRLVALSLRSYLLQPGIRVDLCPPGDDRVGEVVKSCKM 373

Query: 417  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHL 473
              V    G +L++P     T A+   + + E + +  E +     E +C   RIL F  +
Sbjct: 374  TTVHHMSGAILELPD---KTMAFAHKNHLREPKAQLNENRLLAMPEHTC---RILDFSLM 427

Query: 474  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
            + +    L+ S  +   F + D++ G VV+G V  + + G +V     +K L P  H+S+
Sbjct: 428  DNIYFVSLRKSVIDKPFFRYHDLQAGQVVEGTVTVLLAHGMVVHLADHIKGLVPRTHLSD 487

Query: 534  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
              +  P KK+  G ++  RVL V+   K++ +T KK LV+S L +  + ++A    ++HG
Sbjct: 488  ILLKNPEKKYMEGMKVKCRVLSVEPEHKKLFLTRKKALVESSLPLFRTISDARPGCVSHG 547

Query: 592  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +I  I+  GC VRFYN V+G  P SEL  +P  +P   +++GQV+K +++       ++ 
Sbjct: 548  YIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQCDREKAKLL 607

Query: 652  LSF------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
            LSF        + T   E D  K+G  +   V    PN + V ++ +   +  +PT HL+
Sbjct: 608  LSFKGVMEGAAEQTAAPELD-CKVGEKLEAKVLKKMPNGLEVAILPEEI-RAYLPTMHLS 665

Query: 706  DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNS 763
            DHL +  ++   ++ G     L+ ++    N+ L+ K ++  S ++     D S I   +
Sbjct: 666  DHLSNCPLLWECLQEGDSISNLIYINRSHQNITLTKKPTIRWSLEEGVAAKDFSEIKVGT 725

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
             + G++ NI+  G FV F   L G AP+S   D   +D   TY +GQ+V + + +++ E 
Sbjct: 726  QLFGWIKNIMPYGVFVEFPYGLVGLAPKSAMADRFISDTKTTYKLGQTVIAKVTNLDEEK 785

Query: 824  GRITLSLKQSCCSSTDASFMQEHFL-LEEKIAMLQSS-KHNGSELK-WVEGFIIGSVIEG 880
             R  ++LK S   S     +      L+E+ AM + S   + SEL+  +    +G  ++ 
Sbjct: 786  RRFLVTLKISEVISPVGDVLTRLINGLQERKAMTEMSLARDDSELRQQLAALSVGQRLKL 845

Query: 881  KVHESNDFGVV-VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             V+ + D G   VS E H        HH + G  +  G  + A IL +      V +S+ 
Sbjct: 846  TVNTATDNGATFVSDELHGATIQASKHH-VTGMNLVPGQKVTAVILHIDLLSTCVHVSIL 904

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
            +  + + R  N            E SK         A VE + +++ V+ L    H    
Sbjct: 905  SRLLGKKRSLN------------EGSK-------YTATVEHINQDFAVIFLDNTAHLTVI 945

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS 1059
             + S  N     + +   G S+   ++        G  L+  +  +    +    ++K  
Sbjct: 946  QTSSHLNHTDIQELKL--GMSLTVELIEASCEKAHGLPLVAWERSAPKRQNVPSASQKGC 1003

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTV 1117
             +  G +VQA++  +KP  +++    G  G +H++EV D K ++ +        K+G TV
Sbjct: 1004 CF--GEVVQAKVKSVKPTLIQVTLEDGSTGTVHVSEVMDPK-DLCQGFLPTLSVKVGSTV 1060

Query: 1118 TARII----AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1173
            TAR+I    A S+    K   L  +SIK  + +                +G+ +T +V K
Sbjct: 1061 TARVIGGREASSHSKLDKSVALKSVSIKEHLNS--------------YKVGEEITCFVSK 1106

Query: 1174 VDNEWALLTISRH--LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
               +  +L ++ H  +   + +L     P      +  F +G+AV   V  + +  K  R
Sbjct: 1107 FHPDRKVLEVTTHPGVTGTVELLAMVTNPRNATHPESVFKVGQAVYAKV--VERSTKPQR 1164

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPH--LYG 1287
             +L                           + G  ++K+  G    G+VV I P   L  
Sbjct: 1165 FIL--------------------------SLTG--VTKLEKGAVTLGMVVNIDPQKGLLV 1196

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
            ++ F  +  + ++D    Y   + +PL GY + Q                      LR  
Sbjct: 1197 KLPFGGMGTVAITDLADAY---RPNPLGGYSKNQI---------------------LRFF 1232

Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
            L G    N+++  T  D     +  +++L    I++GY+K+V   G FI LSR +  +  
Sbjct: 1233 LLG----NNNEAKTVKDP---EILSVDELKEGQIIRGYIKSVEKCGIFIRLSRSIVGRTE 1285

Query: 1408 LSNLSDGYVESPEK----EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            L + S  YV +  K      P   L+  ++LS++   + V ++L   D+
Sbjct: 1286 LHH-STKYVCNNHKILSEHLPPSTLITTKILSIDTEEESVSLSLLPKDT 1333



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 31/232 (13%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  G +V G ++ +L+   G+VV +  H+ G V  T L +I + +P   Y EG       
Sbjct: 450  LQAGQVVEGTVTVLLAH--GMVVHLADHIKGLVPRTHLSDILLKNPEKKYMEGMK----- 502

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
                  VKC+VL +    +  F   L+ + +L              V++       I D 
Sbjct: 503  ------VKCRVLSVEPEHKKLF---LTRKKAL--------------VESSLPLFRTISDA 539

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
             P  +  GY+  +   GC +     +   V LS LS   +  P+  F IG+++  +VL  
Sbjct: 540  RPGCVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQC 599

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +    ++ ++ K      A Q+    L +  VG+ +  ++ +    GL + I
Sbjct: 600  DREKAKLLLSFKGVMEGAAEQTAAPEL-DCKVGEKLEAKVLKKMPNGLEVAI 650



 Score = 47.0 bits (110), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 121/294 (41%), Gaps = 44/294 (14%)

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF--QDGISDKTVDISNDNMQTF 1256
            EP E   ++     G  V   VL +    +L+ L LR +  Q GI        +D +   
Sbjct: 312  EPKEASSYKE----GDEVRACVLYVEPSTRLVALSLRSYLLQPGIRVDLCPPGDDRV--- 364

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
               G++V       +  + G ++++        H   L+     +P +  +E +   +  
Sbjct: 365  ---GEVVKSCKMTTVHHMSGAILELPDKTMAFAHKNHLR-----EPKAQLNENRLLAMPE 416

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
            +       C++L+ S      F   +SLR S+              +D P     +  DL
Sbjct: 417  HT------CRILDFSLMDNIYF---VSLRKSV--------------IDKP---FFRYHDL 450

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
                +V+G V  + + G  + L+  +   V  ++LSD  +++PEK++  G  V  RVLSV
Sbjct: 451  QAGQVVEGTVTVLLAHGMVVHLADHIKGLVPRTHLSDILLKNPEKKYMEGMKVKCRVLSV 510

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            EP  K++ +T K +   + S      +S+   G +  G I  ++ +G  +   N
Sbjct: 511  EPEHKKLFLTRKKALVES-SLPLFRTISDARPGCVSHGYIVCIKDFGCIVRFYN 563


>gi|345324023|ref|XP_001512041.2| PREDICTED: protein RRP5 homolog [Ornithorhynchus anatinus]
          Length = 1838

 Score =  375 bits (963), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 387/1482 (26%), Positives = 677/1482 (45%), Gaps = 173/1482 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
            FPRGG      RE+  +   E D  F+    G  ++ KK +   +RK     D       
Sbjct: 8    FPRGGVKPKPDREKAVKQPLEQDNLFDVSMHGRTQRRKKSQNDPKRKKTRRSDKKEPKKS 67

Query: 113  DGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDP 169
            D    +L      ++++N+S G+ L G V E N+ ++VI LP GLRG  +A   +D    
Sbjct: 68   DAELFEL------LSVQNLSEGVLLLGCVKESNKYEMVISLPNGLRGFVQATSISDTYTK 121

Query: 170  ILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
             L  ++E  E  ++++P   ++  G LV C+V  ++  KK  GK+ I LSL    + +GL
Sbjct: 122  KLAEQVEREEFLEDVMPLSALYLPGMLVRCVVNSIETTKK--GKQSIRLSLNPKEVNRGL 179

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLL 280
            S  T+  GM+LT  V S EDHGY++  G+     FLPR    E     N G ++K G  L
Sbjct: 180  SAGTLSPGMLLTGTVSSREDHGYLIDIGVRESKAFLPRKKAQEYISMRNKGSELKLGQYL 239

Query: 281  QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
               V  +     +V LS     V+  +  + +  ++D ++PG++V   +Q +  +G+ LS
Sbjct: 240  WCYVEEVKGNGSIVRLSIGSAEVASALATEEQNWTLDNVLPGLVVKAVIQKVTPHGLSLS 299

Query: 341  FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA 400
            FL+ + G VD  HL    P  +    Y   +KV A IL V   ++ V LTL P  LH   
Sbjct: 300  FLSIYRGLVDFLHLD---PKKS--QSYFATQKVKACILSVHRQTKTVRLTLRPNFLHPGL 354

Query: 401  PPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
            P S +    VG + +   V    +  G    +    +   A+     ++  +     +K+
Sbjct: 355  PLSQLSTSLVGTVLENVPVQGFFKKAGATFKLKDGSL---AFARFKHLSNSKKSFNPEKF 411

Query: 458  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
              G   + RI+    ++ L    LK          + D++PG +V+GKV+A+  FG +V+
Sbjct: 412  LPGKTHKCRIIDLSPMDDLVLLSLKEKIINAPFLQYRDLQPGQLVQGKVLALRPFGVLVE 471

Query: 518  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 575
                +K + PL H+++ ++  P KKF +G E+  RVL      K++ +T KKTLV S L 
Sbjct: 472  VTDSIKGVVPLLHLADVQLKHPEKKFHLGDEIKGRVLSCIPSMKKLVLTLKKTLVNSDLP 531

Query: 576  ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
            +++SY  A  +L  HG+I+KI + GC V FYN V+G  P+  LG+D   +  S++++GQV
Sbjct: 532  VITSYRAAKPQLQAHGFISKITEVGCIVGFYNNVRGLVPKGRLGVDCSEDLKSVFYLGQV 591

Query: 636  VKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYV-IAK 692
            +K  +++  P   R+ LS+  KP   SE       LG +V   V VV    + + V I  
Sbjct: 592  IKVTVVNCSPNQERLLLSY--KPMMDSEPAGSAEMLGQMVD--VKVVKKTDMGLQVSILP 647

Query: 693  GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ-- 750
            G     +P  HL+DH+ ++ ++   ++P     ++L L ++    +LS K +LI +A+  
Sbjct: 648  GNVPAFLPKIHLSDHVSNSQLLWHWLQPNDILHRVLCLGSKRGRNILSRKPALICAAEEG 707

Query: 751  QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
            Q+      I P  +  GYV +I++ G FV      TG +PR    D         Y VGQ
Sbjct: 708  QVARYFFDIQPGMLFTGYVTSIMDYGVFVELPFGFTGLSPRVAISDKFVTKTQDHYTVGQ 767

Query: 811  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL---LEE--KIAMLQSSKHNGSE 865
            +V + + DV+ E  R+ LSL+ S C+  D + +    L   LEE   + +L  ++ N + 
Sbjct: 768  TVTALVTDVDEEKQRMLLSLRLSDCNLRDPATVGFSLLCQCLEELQGVRLLMKNQDN-TL 826

Query: 866  LKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAI 924
            ++++     G  +   V E  + G V  S      +    + + + G  +E    ++  +
Sbjct: 827  IQFLASLTPGLRLNLIVQEVLEGGSVTFSGGLGPGLVLSASKYHVGGEKLEPLQRVKTVV 886

Query: 925  LDVAKAERLVDLSLKTVFIDR-FREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKE 983
            L V   +  V +SL+   ++R F++   N Q                     A+V+ +++
Sbjct: 887  LHVDTLKLKVHVSLRPELLNRKFKKVKLNDQHM-------------------AVVQHLEK 927

Query: 984  NYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV---------MALPSSST 1033
             +++ SL E    + +   S +N T +F  ++   GQ V  T+         + L +   
Sbjct: 928  EFVIASLVETGQLVAFPIASHFNDTFRFDSEKLQLGQGVCLTLRTTEPGDFGLLLATKEP 987

Query: 1034 AGRLLL-----LLKAISETE------------TSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
            A + ++      L+   E +               ++ A KK ++ +G LV+  +  +KP
Sbjct: 988  ASKRVVPKPQEKLEPTGEPQEKVGPTRKPQKKVGPTREAVKKHAFSIGELVKGIVRSVKP 1047

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK------PDM 1130
              + +    G  G IH++++ D+   +     +  K  + +TAR+I   +       P  
Sbjct: 1048 TYIIVTLESGITGFIHVSQILDE-VPLGTCPTTRLKAKKRITARVIGGKDMRTRRFLPAT 1106

Query: 1131 KKSFLW---ELSIKPSMLTVSEIG-------SKLLFEECDVSIGQRVTGYV--YKVDNEW 1178
               F+    ELSI+PS L  S            L F   +V  G++V  +V  Y +  + 
Sbjct: 1107 HSRFIRTVPELSIRPSELKASSTALNTHSYSHALKFRGYNV--GKQVICFVKKYNIVEKC 1164

Query: 1179 ALLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
              + +S  +  ++   +L  +Y+   L+  +++F +G+A++  V+  +            
Sbjct: 1165 LEVEVSPVISGKVPHLLLSLSYK--VLRHPEKKFKVGQALSAIVVGTD------------ 1210

Query: 1237 FQDGISDKTVDISNDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                    +         T IH   +G I  G++ K++  V GL V++     G+V    
Sbjct: 1211 --------SSRSLLILSLTGIHKLKKGTITMGKVMKVIPDV-GLTVRLPFECAGQVSIFH 1261

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353
            ++           D     PL G+   + VKC VL    + +GT  +ELSLR S    + 
Sbjct: 1262 IQ-----------DSYSAVPLEGFKPEKIVKCCVL----STKGTM-MELSLRLS---RTK 1302

Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
            +N  +   D     + +  ++D+    +++GYVK+V  +G FI +S  +  +V    +S 
Sbjct: 1303 SNYQEKVED-----REVTSLDDVKEGELLRGYVKSVEHQGVFISISSTVVGQVQYQCVSQ 1357

Query: 1414 GYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
              V + +   K    G L+  +VLSV      VE++L   D+
Sbjct: 1358 YLVSNQKLYNKYLRKGMLLTTKVLSVNKEQNLVELSLLPQDT 1399



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 21/188 (11%)

Query: 1064 GSLVQAEITEIKP---LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            G++   ++ ++ P   L +RL F     G++ I  + D  S V       FK  + V   
Sbjct: 1229 GTITMGKVMKVIPDVGLTVRLPFECA--GQVSIFHIQDSYSAVP---LEGFKPEKIVKCC 1283

Query: 1121 IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDN 1176
            +++        K  + ELS++ S  T S    K+   E     DV  G+ + GYV  V++
Sbjct: 1284 VLST-------KGTMMELSLRLSR-TKSNYQEKVEDREVTSLDDVKEGELLRGYVKSVEH 1335

Query: 1177 EWALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            +   ++IS  +  Q+ +   S Y  S  + + +    G  +T  VLS+NKE+ L+ L L 
Sbjct: 1336 QGVFISISSTVVGQVQYQCVSQYLVSNQKLYNKYLRKGMLLTTKVLSVNKEQNLVELSLL 1395

Query: 1236 PFQDGISD 1243
            P   G  D
Sbjct: 1396 PQDTGKQD 1403



 Score = 40.0 bits (92), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 1373 IEDLSPNMIVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            I  L    I  G V K +   G  + L  +   +V + ++ D Y   P + F   K+V  
Sbjct: 1223 IHKLKKGTITMGKVMKVIPDVGLTVRLPFECAGQVSIFHIQDSYSAVPLEGFKPEKIVKC 1282

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFI 1486
             VLS +     +E++L+ S +++  Q      E+ +L ++  G+++ G +K VE  G+FI
Sbjct: 1283 CVLSTK--GTMMELSLRLSRTKSNYQEKVEDREVTSLDDVKEGELLRGYVKSVEHQGVFI 1340

Query: 1487 TIENT 1491
            +I +T
Sbjct: 1341 SISST 1345


>gi|351715635|gb|EHB18554.1| RRP5-like protein [Heterocephalus glaber]
          Length = 1809

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 388/1460 (26%), Positives = 654/1460 (44%), Gaps = 177/1460 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   + + E+            ++  E E+ +R   KKN+K   KT++   E  + 
Sbjct: 8    FPRGGTRKIHKSEKSYQQLVEHDNLFDISNEEESTKR---KKNQKGPAKTKKLKIEKREG 64

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
                 G  +  KL      ++++++  GM++ G V EVNE +LVI LP GL+G  +  + 
Sbjct: 65   -----GKSVKEKL----EILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEI 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  +   ++  GK+ + LSL   
Sbjct: 116  CDAYTKKLNEQVAQEEPLKDLLRLPELFSPGMLVRCVVSSVSITER--GKKSVKLSLNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +
Sbjct: 174  NVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVVGTRAFLPLQKAQEYIRQKNKGAKL 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  ++  +  +  V  LS +   +S  +    +  S++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLNCIIEEVKSSGGVASLSIEQSAISTAIATQEQNWSLNNLLPGLVVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+FTG VD  HL +    T + N     + V A IL V P +RAV L+L P 
Sbjct: 294  FGLTLNFLTFFTGLVDFMHLDSKKVGTYFSN-----QAVRACILCVHPRTRAVRLSLRPI 348

Query: 395  LLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             L    P + +    +G +     V       G    +    +   AY  +S +++ +  
Sbjct: 349  FLQPGRPLTQLSCQHLGAVMKDVPVQGFFNKAGATFKLKDGAL---AYARLSHLSDSKNA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K G+  + RI  +  ++GLA   L+ S  E     + D+K G VVKG V+ +  
Sbjct: 406  FRPETFKPGNMHKCRITDYSPMDGLALLSLRTSVIEAQYLRYHDIKTGAVVKGTVLTMRP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    V+ L P  H+++  +  P KK++VGAE+  RVL    ++K++ +T KKTL
Sbjct: 466  FGMLVKVGEQVRGLVPATHLADILMKNPEKKYQVGAEVKCRVLLCDPEAKQLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL +++ Y +A   L THG I + + +GC VRFYN VQG  P+ ELG     +P   
Sbjct: 526  VTSKLPVITCYEDAKPGLQTHGVIHRAKDYGCIVRFYNDVQGLVPKHELGAQCIPDPEKA 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV----VTPNAV 685
            ++ GQVVK  +++  PA  R+ LSF +      +++ V  G      V V    + P A 
Sbjct: 586  FYAGQVVKVAVLNCEPAKERMLLSFKLLSDPEPKNERVGCGQKKRKDVGVGQAGLLPVAE 645

Query: 686  VVYVIAKGYSKGTIPT---EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742
             V+V    + +  +     E   D L+ A +  ++  P   F     L +  +N  L  +
Sbjct: 646  QVFVFL--FPEQLVDVKVLEKTKDGLQVAVLPHNI--PA--FLPTPHLSDHVANGPLVHR 699

Query: 743  YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            +     A Q P   S I P  ++ G+V +I + G FV+F   L+G AP++   D    + 
Sbjct: 700  WLQAVEAGQDPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNP 759

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC---SSTDASFMQEHFLLEE--KIAMLQ 857
            S  +  GQ+V + + +V+ E  R+ LSL+ S C        S +     LEE   +  L 
Sbjct: 760  SDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCRLGGPASGSLLLLSQCLEELQGVRSLM 819

Query: 858  SSKHNGSELKWVEGFIIGSVIEGKVHE-SNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
            SS+ +   ++ +     G V+   V E S D  VV +     D+    + +  AG  VES
Sbjct: 820  SSR-DSVLVQALAEMTPGMVLNLVVQEVSEDGSVVFTGAPVRDLVLRASRYHRAGQEVES 878

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            G   +A IL V      V +SL+   +        NR+A K K+         VHQ   A
Sbjct: 879  GQKKKAVILYVDMLGLEVHVSLRKELV--------NRKAWKLKKG-------SVHQ---A 920

Query: 977  IVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAG 1035
             V+ ++E++ V S+ E  H + ++  S  N T +F  ++   GQSV   V+        G
Sbjct: 921  TVQHLEESFAVASVGETGHLVAFSLASHLNDTFRFDSEKLQVGQSV-CLVLKTAEPGVTG 979

Query: 1036 RLL---------LLLKAISETETSSSKRA---------KKKSSYDVGSLVQAEITEIKPL 1077
             LL         +L +   ++E                +KK    +G +V   +  +KP 
Sbjct: 980  LLLAVEGPAARRVLRQPCKDSEMGDEGEGADPALAAGPRKKHGLAIGDVVTGTVKSVKPT 1039

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1137
             + +    G  G +H + V D+         +  K+G+TVTAR+I   +     K+F  E
Sbjct: 1040 HVVVTLEDGVMGCVHASHVLDEVPEGAAPT-ATLKVGKTVTARVIGGRD----VKTF-NE 1093

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1195
            L  K     ++   +  + +      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1094 LE-KDGHTVLNTYSASPVEKIQQYRAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1152

Query: 1196 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            ++     L+   ++F IG+A+   V+  +  K  L L L             I    ++ 
Sbjct: 1153 TSLSFKVLKHPDKKFQIGQALRATVVGPDSSKPFLCLSL-------------IGPHKLK- 1198

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
               +G++  GR+ K+    G  V       +GR     +    VSD    Y E    PL 
Sbjct: 1199 ---KGEVAMGRVVKVAPSEGLTVA----FPFGRTGTVSV--FHVSD---SYSE---RPLQ 1243

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
             +   + V+                               + +  + V+ P   +  I D
Sbjct: 1244 DFSPQKVVR------------------------------TNPETKSKVEDP--EINSILD 1271

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGR 1432
            +    +++G+V++V   G  + L   ++     S++S   +       K  P G+L+  R
Sbjct: 1272 IKEGQLLRGFVRSVEPSGVLLGLGPSVEGLARFSHVSQCSLPKKGLYSKYLPEGRLLTAR 1331

Query: 1433 VLSVEPLSKRVEVTLKTSDS 1452
            VL ++P    VE++    D+
Sbjct: 1332 VLRLDPSKNLVELSFLPGDT 1351



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 46/87 (52%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            G+  +   ++ P M++ G+VK++   G F+     L      + +SD +V +P   F  G
Sbjct: 707  GQDPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEG 766

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSR 1453
            + V  +V +V+   +R+ ++L+ SD R
Sbjct: 767  QTVVAKVTNVDEEKQRMLLSLRLSDCR 793



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            +  D+    +V+G V  +   G  + +  ++   V  ++L+D  +++PEK++ +G  V  
Sbjct: 446  RYHDIKTGAVVKGTVLTMRPFGMLVKVGEQVRGLVPATHLADILMKNPEKKYQVGAEVKC 505

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            RVL  +P +K++ +TLK +   T+    I    +   G    G I R + YG  +   N
Sbjct: 506  RVLLCDPEAKQLIMTLKKTLV-TSKLPVITCYEDAKPGLQTHGVIHRAKDYGCIVRFYN 563


>gi|148710080|gb|EDL42026.1| programmed cell death protein 11 [Mus musculus]
          Length = 1643

 Score =  366 bits (939), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 384/1443 (26%), Positives = 632/1443 (43%), Gaps = 225/1443 (15%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF +      +D            V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH                          ++N  L
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDH--------------------------AANGPL 678

Query: 740  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
               +       Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D   
Sbjct: 679  LHHWLQTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFV 738

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAML 856
               S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   + 
Sbjct: 739  TTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIR 798

Query: 857  Q-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
               S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG  V
Sbjct: 799  SLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEV 858

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            E G   +  +L V   +  V +SL    ++R           K ++ R++S+  G     
Sbjct: 859  EPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSRHQG----- 902

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
              IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+       T
Sbjct: 903  --IVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVT 960

Query: 1034 AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
            A                                                   GF G IH 
Sbjct: 961  AD--------------------------------------------------GFVGCIHA 970

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSIKPSM 1144
            + + DD   V  +  +  K G+ VTAR+I     K+ K  P     F   + ELS++PS 
Sbjct: 971  SRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTYKFLPISHPRFVLTILELSVRPSE 1029

Query: 1145 LTVS----EIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSA 1197
            L  S       S+   E+      GQ VT +   Y V  +W  + I   ++ ++ +L ++
Sbjct: 1030 LKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTS 1089

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTF 1256
                 L+   ++F +G+A+   V+  +  +  L L ++ P++                  
Sbjct: 1090 LSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR------------------ 1131

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            + EG++  GR+ K++    GL V       G+V    L +         Y E    PL  
Sbjct: 1132 LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SYSEA---PLED 1179

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
            +   + V+C +L  +  V     + LSLRSS     + N       ++ P   +  IED+
Sbjct: 1180 FCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINSIEDV 1226

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGKLVAG 1431
                +++GYVK V      I L   +      S++S+     PEKE      P GKLV  
Sbjct: 1227 KEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNGCLPEGKLVTA 1284

Query: 1432 RVL 1434
            + L
Sbjct: 1285 KEL 1287



 Score = 43.9 bits (102), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 31/202 (15%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
            G++V++G  + G V    L +I + +P   Y  G        DE   VKC+VL      +
Sbjct: 467  GILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPG--------DE---VKCRVLLCDPEAK 515

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                  ++L+ +L       +S LS         +   E   P +   G +  V   GC 
Sbjct: 516  KLI---MTLKKTL------VTSKLSL--------ITCYEGAKPGLQTHGVIIRVKDYGCI 558

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDSRT 1454
            +     +   V    LS  ++  PE  F  G++V   VLS EP  +R+ ++ +  SDSR 
Sbjct: 559  VKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRP 618

Query: 1455 ASQSEINNLSNLHVGDIVIGQI 1476
                  +  S    G + IGQ+
Sbjct: 619  KDPGVES--SQKKTGAVRIGQL 638



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 48/282 (17%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1449 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             +   T+  S I        G    G I RV+ YG  +   N
Sbjct: 523  KT-LVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN 563



 Score = 43.5 bits (101), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 46/85 (54%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            G+  + + ++ P M++ G+VK +   G F+     L      + +SD +V +P + F  G
Sbjct: 689  GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEG 748

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSD 1451
            + V  +V +V+   +R+ ++L+ SD
Sbjct: 749  QTVVAKVTNVDESKQRMLLSLRLSD 773


>gi|325180379|emb|CCA14782.1| rRNA biogenesis protein rrp5 putative [Albugo laibachii Nc14]
          Length = 1939

 Score =  365 bits (937), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 427/1578 (27%), Positives = 705/1578 (44%), Gaps = 227/1578 (14%)

Query: 29   NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKK 88
            +SKK+ +D +E Q+ A  P  D+ +F   G   +TQ   D       +  E+       K
Sbjct: 28   HSKKRNHDRMEQQEEA--PKHDL-LF---GSKGITQANSDSTSKRSKSTSES-------K 74

Query: 89   NKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKD 148
             K+ K  T+  ANE             S  +   A  I  K+I + M L G++ ++ E  
Sbjct: 75   PKRVKPNTKHAANENCTQ---------SHLVNEKATTINFKSIKSNMLLLGLIRDITETG 125

Query: 149  LVICLPGGLRGLARAADALDPIL------------DNEIEANEDNLLPTIFHVGQLVSCI 196
            L+I LP  L G     +  D               ++ I+A++   L  IF + Q V C+
Sbjct: 126  LLISLPSKLNGFVPMEECSDEFYHHLHASSSSSGPNSTIKASKLAPLNAIFSINQYVPCM 185

Query: 197  VLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
            VL    D K  GK  + LS+RLSLL+   +   V++ M +   ++S+ED G +++ G+  
Sbjct: 186  VLNKSKDDK--GKHLV-LSMRLSLLHAEYTPNCVKKSMTMYGTIQSMEDQGAVINLGIRG 242

Query: 257  FTGFLPRNNLAENSGIDVKPGLLLQG-----VVRSIDRTRKVVYLSSDPDTVSKCVTKDL 311
               F P++ L      D +   +L G      V +++     V LS   +   K VT+  
Sbjct: 243  MHAFAPKSQLLAACPEDPECASMLMGRQFLFTVLNVNPHTSTVTLSPARNHTIKAVTRG- 301

Query: 312  KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD-------IFHLQNTFPTTNWK 364
              +++  L+PG++++ RV+ ++ NG+ ++FLT+F GTVD       IFH   T     W 
Sbjct: 302  DHLTVKHLLPGLLLNVRVEQVVSNGLFVNFLTFFHGTVDYNHVSRLIFH-DETEDMKTWT 360

Query: 365  NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP--PSHVKVGDIYDQSKVVRVDRG 422
              + +  K  ARI+ VD   + + L++ P+++H   P     + VG   D + + R+D G
Sbjct: 361  LMFKKGIKSRARIIGVDRAEKKIMLSMAPHIVHLDHPFDAHSMPVGSSIDSATIERIDPG 420

Query: 423  LGLLLDIP---STPVST---PAYVTISDVAEEEVRK-LEKKYKEGSCVRVRILGFRHLEG 475
            +G+LL +P    TP      PAYV IS+V++  V K L+KKY  G  +R R++G    + 
Sbjct: 421  IGMLLSLPLFEETPSKNSKLPAYVHISNVSDAHVDKHLDKKYTIGDKMRCRVIGSASFDN 480

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            + T   K S+    V  H D+ PG  V  K++ +  +G +++   GV+ L  + H+    
Sbjct: 481  IVTVSCKESSLSQTVLRHCDLAPGQHVNAKILVMKEWGVLLEISEGVRGLVTMQHVPSII 540

Query: 536  IVKPGK------KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
              K  K      KF+ G  +  +VL V   +K+  +T K+ L++S+  IL+SY +A + L
Sbjct: 541  ASKLTKSKDAIGKFQQGRMVDAQVLHVDTAAKKTFLTMKRALMESQFPILASY-KAENGL 599

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKCRIMSSIPA 646
            +T G+ITKI   G  V FY GV G  P S L    G E     Y +GQVV+ RI      
Sbjct: 600  VTMGYITKIAPFGVIVSFYGGVHGLVPASTLH-QAGIECFEDAYTLGQVVRARITYCDTE 658

Query: 647  SRRINLSF--MMKPTRV-SEDDLVKLGSLVSGVV--DVVTPNAVVVYVIAKGYSKGTIPT 701
             +R+ LS      PT V S+D L+  GS++  VV  D+     VV      G   G +  
Sbjct: 659  KQRLLLSLNTTSTPTEVDSKDSLI--GSILCDVVVTDIDMEEHVVRVKTPLGLI-GNVSF 715

Query: 702  EHLADHLEH--------ATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQL 752
             HL D   H        A++ K  I  G EF   LVL   +  +L LS K  L     ++
Sbjct: 716  VHLTDFPRHSFLIDLILASIRKDEIWAGQEF---LVLSQSTDRVLELSRKPMLTRHISKI 772

Query: 753  PSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVG 809
            P     +   S + G+V  I  E G FV FL  LTGFA +S  VD +   +  S  + VG
Sbjct: 773  PQSIDSVSEKSKLFGFVAAIEPEKGVFVEFLNHLTGFAHKS-LVDEKFVQVISSDAFQVG 831

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML-QSSKHNGSELKW 868
            ++V  ++L+   + G+ T+             F   HF LE   +   + S+   +E   
Sbjct: 832  ETVVCSVLN-KLQGGKFTV------------DFRARHFTLEHFPSYFAEWSRQVYTETNA 878

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
             +GF +G  + G+      +G V S E+ SD    +    L    +E  S     ++   
Sbjct: 879  YQGFPVGLAVNGEFVAKRSYGSVFSIED-SDFQASV----LVRDGIEMDSTSSQKLV--- 930

Query: 929  KAERLVDLSL-KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK--ENY 985
                LVD  + K V+     E  + R    K+R R   + L + Q ++A V  +   E Y
Sbjct: 931  ----LVDFDVEKKVYFGILDEKLA-RSCTLKRRSR--WERLAIDQNLDARVLAIGTLEQY 983

Query: 986  LVLSLPEYNHS-IGYASVSDY--NTQKFPQKQFLNGQSVIATVMALPSSS----TAGRLL 1038
             V++L     S IG   +SD+     K  ++       V+AT +     S    T    L
Sbjct: 984  AVVALNVGKRSQIGVVQLSDFWRPLSKCIEEDTRIKCRVVATCLRDTRDSDVIPTPFEEL 1043

Query: 1039 LLLKAISETE------------TSSSKRAKKKSSYDVGSLVQAEITEIKP--LELRLKFG 1084
             LL+   + E             S  +       + VG LV   I  IK   +E++LK  
Sbjct: 1044 PLLRVCDDHEHRQKPARLLRDAVSMPRYKHPAEEFQVGKLVTGRIATIKQDGMEIKLK-A 1102

Query: 1085 IGFHGR----IHITEVNDDKSNVVENLFSNFKIGQTVTARII------AKSNKPDMKKS- 1133
                G+    + I +V+ D++    +    +     VT RI+      A   KP  + + 
Sbjct: 1103 TKQCGKVVAMVSIIDVDADENET--HPLDQYAPKMAVTGRILTIMQKGANQRKPVSESNP 1160

Query: 1134 ---FLWELSIKPSMLTVSEI------------GSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
                + +LS++   ++  E+            GSKLL      ++G  + G V +    W
Sbjct: 1161 ATFHILQLSLRQQDISSDEMEHLRADWGLENKGSKLL------TVGNVLEGVVVE-QKAW 1213

Query: 1179 ALLT-ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG-HVLSINKEKKLLRL-VLR 1235
             LL  +S  +   L  ++ + E S L+ F   + +GK V G H++S++  ++ + L ++ 
Sbjct: 1214 GLLIRLSHRVVGFLHCMEISTELSVLERFHELYPVGKRVNGCHIVSVDHAERRVDLSLIH 1273

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
              ++GI+        +N+Q       +V     K       L++Q+  + +GRV  TEL+
Sbjct: 1274 ESKEGIT--------ENLQVGNKVIGVVLDSSKKAPFRPPSLMLQLSAYTFGRVCVTELR 1325

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
            +   +       E QF P      G+F+   +L   + V      E++LRS        +
Sbjct: 1326 S-PTNWTSQMLQESQFKP------GKFLVGTLLSAQKDVW-----EVTLRS--------D 1365

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
              D S      G             +V G + + +S GCF+ ++  L  +VLL +LSD +
Sbjct: 1366 RQDESYSTYEIGN------------LVTGIIASTSSMGCFVRINHLLTIRVLLRDLSDNF 1413

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1475
            +  P  EFP+GK+VAGR+ + +     V  ++    S  +       ++NL  G IV G+
Sbjct: 1414 INDPISEFPVGKVVAGRITAKQVTQDAVLYSMSLKPSIVSDGIASLTMTNLKEGMIVTGK 1473

Query: 1476 IKRVESYGLFITIENTNL 1493
            + +++SYG+F+ +  +NL
Sbjct: 1474 VSKIQSYGVFVRLNQSNL 1491



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 202/500 (40%), Gaps = 95/500 (19%)

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI-TLSLKQSCCSSTDASFM 843
            L  +AP+  AV G+   + +    G + R  + + N  T  I  LSL+Q   SS +   +
Sbjct: 1128 LDQYAPK-MAVTGRILTIMQK---GANQRKPVSESNPATFHILQLSLRQQDISSDEMEHL 1183

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
            +  + LE K          GS+L       +G+V+EG V E   +G+++       V GF
Sbjct: 1184 RADWGLENK----------GSKL-----LTVGNVLEGVVVEQKAWGLLIRLSHR--VVGF 1226

Query: 904  ITHHQLAGATVES-----------GSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANS 951
            +  H +  +T  S           G  +    I+ V  AER VDLSL             
Sbjct: 1227 L--HCMEISTELSVLERFHELYPVGKRVNGCHIVSVDHAERRVDLSLI------------ 1272

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIV------EIVKENYLVLSLPEYNHSIGYASVSD- 1004
                   + K   +++L V   V  +V         +   L+L L  Y  + G   V++ 
Sbjct: 1273 ------HESKEGITENLQVGNKVIGVVLDSSKKAPFRPPSLMLQLSAY--TFGRVCVTEL 1324

Query: 1005 -----YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS 1059
                 + +Q   + QF  G+ ++            G LL   K + E    S ++ +  S
Sbjct: 1325 RSPTNWTSQMLQESQFKPGKFLV------------GTLLSAQKDVWEVTLRSDRQDESYS 1372

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
            +Y++G+LV   I     +   ++       R+ + +++D   N + +  S F +G+ V  
Sbjct: 1373 TYEIGNLVTGIIASTSSMGCFVRINHLLTIRVLLRDLSD---NFINDPISEFPVGKVVAG 1429

Query: 1120 RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
            RI AK    D   + L+ +S+KPS+++   I S  +    ++  G  VTG V K+ +   
Sbjct: 1430 RITAKQVTQD---AVLYSMSLKPSIVS-DGIASLTM---TNLKEGMIVTGKVSKIQSYGV 1482

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
             + +++   + L  +    E    +     F  G +V   VL +   +  L   L  F D
Sbjct: 1483 FVRLNQSNLSGLCHISEIGEERIQKPLTELFKEGDSVKAKVLKVENGRISLGFKLAYFDD 1542

Query: 1240 GISDKTVDI-----SNDNMQ 1254
             I    ++      S+D +Q
Sbjct: 1543 DIESANIETIDQQRSDDEVQ 1562



 Score = 40.8 bits (94), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 491  FTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKP-GKKFKVGAE 548
             T +++K GM+V GKV  + S+G  V+     +  LC +  + E  I KP  + FK G  
Sbjct: 1459 LTMTNLKEGMIVTGKVSKIQSYGVFVRLNQSNLSGLCHISEIGEERIQKPLTELFKEGDS 1518

Query: 549  LVFRVLGVKSKRITVTHK 566
            +  +VL V++ RI++  K
Sbjct: 1519 VKAKVLKVENGRISLGFK 1536


>gi|334314101|ref|XP_001378624.2| PREDICTED: protein RRP5 homolog [Monodelphis domestica]
          Length = 1796

 Score =  364 bits (934), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 333/1160 (28%), Positives = 544/1160 (46%), Gaps = 117/1160 (10%)

Query: 54   FPRGG----GHSLTQRERDEIHAEVDAEFE-AVERGLHKKNKKKKKKTERKANETVDDLG 108
            FPRGG     H +   ++   H   D  F+   E G  K+ +  ++  + K ++T     
Sbjct: 8    FPRGGSKKKAHPVKAPQQPIEH---DNLFDIPTEEGSRKRKRNPEQAAKNKRSKTEKKEP 64

Query: 109  SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---AD 165
            S      SG L       +++ +S GM+L G V EVN  +LVI LP  L G  +A    D
Sbjct: 65   SKSEAEQSGIL-------SIEVLSEGMRLLGCVKEVNNLELVISLPNDLWGYVQATNICD 117

Query: 166  ALDPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
            A    L+ +++  E  ++L P   +F  G LV C V  L    K+   + I LSL    +
Sbjct: 118  AYTKKLNEQVDREEPLEDLAPLSKLFQPGMLVRCAVSSLKSTSKK--NKSIKLSLNPKDV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
               LS   ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  ++ 
Sbjct: 176  NGVLSPAALKPGMLLTGTVDSVEDHGYLVDIGVGGTKAFLPWQKEQEYVKQKNKGTKLQV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +      V LS+    VS  +  + +  ++D L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCLIEEVKGNGGSVRLSTIQSEVSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPYG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + LSFL+ FTG VD  HL      +     Y Q + V A IL V P +++V LTL+   L
Sbjct: 296  LSLSFLSSFTGLVDFMHLD-----SKKTGHYFQTQMVRACILSVHPRTKSVRLTLHSSFL 350

Query: 397  HNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P +   H  +G + +   V       G    +    +   AY  I  +++ E    
Sbjct: 351  QAGRPITRLCHHLIGAVLNDVPVQSFYTKAGATFRLKDGSL---AYARIRHLSQTEKSFK 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             +K+K G+  R R++ F  ++ LA   LK S  E     + D++PG +VKGKV  + S+G
Sbjct: 408  PEKFKPGNLHRCRVIDFSPMDDLALLSLKTSIIEAPFLRYHDIQPGQIVKGKVFTLRSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
             IV+    +K L P  H+++ +I  P KK++V  E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MIVKVTEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKCRVLMCDPENKKLLMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            S L  L++Y EA   L THG+I+ I+  GC V+FYN V+G  P+ ELG  P   P  +++
Sbjct: 528  SSLPALTNYKEAKPDLQTHGFISSIKDCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 684
            VGQVVK  ++ S P   R+ LSF       M    +  +  +VK G LV   V   T   
Sbjct: 588  VGQVVKVTVLKSEPEQERMLLSFRLSNDKEMESTAQSQKKAMVKTGQLVDVKVKKKTEKG 647

Query: 685  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
            + V ++    S   +PT HL+D++ ++ ++   ++ G    ++L L +   +++L  K +
Sbjct: 648  LEVSILPDDIS-ALLPTTHLSDNVTNSQLLCYWLQAGDILHKVLCLSHSDGHIVLCRKPA 706

Query: 745  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            LI++ +  Q P   S   P  ++ G+V +I   G FV+F   L+G AP+S   D     +
Sbjct: 707  LISAVESGQDPKVFSEFQPGMLLTGFVKSIKAYGIFVQFPSGLSGLAPKSALSDKFVTTI 766

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL---LEE--KIAMLQ 857
            S  +  GQ+V + + +V+ E  R+ LSL+ S  S  D +      L   LEE   +  L 
Sbjct: 767  SDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDVSQEDTTASSLTLLSQCLEELQGVRSLM 826

Query: 858  SSKHN---GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI----THHQLA 910
            SS+ +    +  +   G ++  V++     S+D  +V S   +  V G +     +HQ  
Sbjct: 827  SSRDSVLTQTLAEMTPGLLVDLVVQDM---SSDGSLVFS---NGSVPGLVLRASKYHQ-G 879

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
            G  V+ G   +A IL V   +  V +SL+   +        NR+ ++ K+  E       
Sbjct: 880  GKAVDPGQRTKAVILHVDTQKSEVHVSLRQELV--------NRKVKQLKKDTEH------ 925

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSV-------- 1021
                 A++E +++ + + SL E    I +   S  N T +F  ++   GQ V        
Sbjct: 926  ----RAVIEHLEKTFAIASLVETGQLIAFPVASHLNDTFRFDSEKLQVGQGVSVIIKSTK 981

Query: 1022 ---IATVMALPSSSTAGRLLLLLKAISETETSSS---KRAKKKSSYDVGSLVQAEITEIK 1075
               I   +A+  SS   R   L     E+            +K +  +G +V   +  IK
Sbjct: 982  PCDIGLFLAV-ESSVKKRTPALPSVAPESAGQDPGVVSELLEKPTLPIGEMVTGTVKSIK 1040

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS---------- 1125
               + +    G  G IH +++ DD S+      +  K+G  VTAR+I +           
Sbjct: 1041 ATHVIVTLENGLTGYIHASQILDDVSHGTHPT-TTLKVGNPVTARVIGQRTWLTHKSLPI 1099

Query: 1126 NKPDMKKSFLWELSIKPSML 1145
            + P   ++ + ELSI+PS L
Sbjct: 1100 SHPSSTQT-VSELSIRPSEL 1118



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 100/233 (42%), Gaps = 31/233 (13%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  G IV G++  + S   G++V++   + G V    L ++ + +P   Y          
Sbjct: 450  IQPGQIVKGKVFTLRSY--GMIVKVTEQIKGLVPTLHLADVQIRNPQKKY--------RV 499

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
             DE   VKC+VL      +      ++L+ +L              V++    L   ++ 
Sbjct: 500  QDE---VKCRVLMCDPENKKLL---MTLKKTL--------------VESSLPALTNYKEA 539

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
             P++   G++ ++   GC +     +   V    L    + +PE+ F +G++V   VL  
Sbjct: 540  KPDLQTHGFISSIKDCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKS 599

Query: 1437 EPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            EP  +R+ ++ + S D    S ++    + +  G +V  ++K+    GL ++I
Sbjct: 600  EPEQERMLLSFRLSNDKEMESTAQSQKKAMVKTGQLVDVKVKKKTEKGLEVSI 652



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            +  D+ P  IV+G V  + S G  + ++ ++   V   +L+D  + +P+K++ +   V  
Sbjct: 446  RYHDIQPGQIVKGKVFTLRSYGMIVKVTEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKC 505

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1465
            RVL  +P +K++ +TLK    +T  +S +  L+N
Sbjct: 506  RVLMCDPENKKLLMTLK----KTLVESSLPALTN 535



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +  P M++ G+VK++ + G F+     L      S LSD +V +    F  G+ V  +V 
Sbjct: 722  EFQPGMLLTGFVKSIKAYGIFVQFPSGLSGLAPKSALSDKFVTTISDHFVEGQTVVAKVT 781

Query: 1435 SVEPLSKRVEVTLKTSD 1451
            +V+   +R+ ++L+ SD
Sbjct: 782  NVDEEKQRMLLSLRLSD 798


>gi|432848327|ref|XP_004066290.1| PREDICTED: protein RRP5 homolog [Oryzias latipes]
          Length = 1814

 Score =  363 bits (931), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 363/1458 (24%), Positives = 662/1458 (45%), Gaps = 141/1458 (9%)

Query: 48   DDDVPVFPRGGGHSLTQRERDEI----HAEVDAEFEAVERGLHKKNKKKKKKTERKANET 103
            +DD   FPRGG  ++ ++  D       A+VD  F+  E   +KK K + K   +   + 
Sbjct: 5    EDD---FPRGG--TVKKKSADSKIAVGRAQVDNLFQVNEPTENKKRKGRAKDESKPLKKQ 59

Query: 104  VDDLGSLFGDGISGKLPRYANKIT-LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG--- 159
              D      D +    P    +I   KN+  GM + G V  V + ++ + LP GL+G   
Sbjct: 60   KSD------DALMLNAPAKNLEILHTKNVKVGMLMLGCVKTVADFEVSVGLPCGLQGFLS 113

Query: 160  LARAADALDPILDNEIEANEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 217
            +    D+   +L +++E+++  +  LP +FH G ++ C+V QLD  K   G   I LS+ 
Sbjct: 114  IKNICDSYTKLLSDQLESDDAEICSLPHLFHPGMVLRCVVAQLDVTKG--GSLSIQLSIN 171

Query: 218  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL--AENSGIDVK 275
              L+ K ++  +++ GMVL+  V+S+EDHG I+  G+     FLP   +   +N   +++
Sbjct: 172  PKLVNKSVTSSSLKAGMVLSGCVESVEDHGCIIDIGVNGTKAFLPEEAMKTEQNQLRELR 231

Query: 276  PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
             G  L  +V  +    +VV LS +P  V++   +  +G S+  L+PG++V + V+ + ++
Sbjct: 232  LGQYLTCLVERVKNDGRVVSLSVNPAAVAQACAEPRQGWSLSNLLPGLLVKSTVKKVTKH 291

Query: 336  GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
            G++L FL+ F+G VD  H++   PT+     Y +  +V A +L+V+P+SR VGL+L  +L
Sbjct: 292  GLLLDFLSSFSGQVDFLHMEPE-PTST----YTEGLQVQACVLYVEPSSRLVGLSLRRHL 346

Query: 396  LH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
            L        +P    ++G++    K+  +    G +L++P     +PA+V  + + E   
Sbjct: 347  LQPSSGIEPSPAEGDRIGEVLKGCKLAAMHHKSGAVLELPD---GSPAFVHRNHLKEPNE 403

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
               E +         RIL F  +E +    L+ S  E   + + D+K G VV+G V  + 
Sbjct: 404  PTNENRVYAAPEHTCRILDFSPMEQIHFATLRKSVIEKPFYRYQDLKAGQVVEGTVSVLL 463

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
            S G +V     +K L P  H+S+  +  P KK+  G ++  RVL V  + K++ +T KK 
Sbjct: 464  SHGMVVHLSDHIKGLVPRTHLSDIVLKNPEKKYAPGMKVKCRVLSVDPEGKKLYLTRKKA 523

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+S L +  +Y++A    ++HG++  I+  GC VRFYN V+G  P SEL  +P   P  
Sbjct: 524  LVESPLPLFLTYSDARPGRVSHGYVVCIKDFGCIVRFYNDVKGLVPLSELSSEPVVHPED 583

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVT 681
            +++VGQV+K  ++   P   ++ LSF         + T    D    +G  +   V   +
Sbjct: 584  VFYVGQVLKAAVLQCDPERSKMILSFKAAVEGGAAEATEAHVD--CDVGKRLEAKVVKKS 641

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             N + V ++     +  +PT HL+DH+ +  ++   ++ G      +  +  + N+ L+ 
Sbjct: 642  VNGLEVAILPDEI-RAILPTMHLSDHVSNCPLLWESLQEGDVISDAVCFNRINLNITLTK 700

Query: 742  KYSL--INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K ++  I     +  + S +     + G+V NI+  G FV F   L G AP+S   D   
Sbjct: 701  KPAVRRILEEGAVAKNFSELTVGMQLVGWVKNIMPYGVFVEFPYGLLGLAPKSAMSDKFI 760

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
            +D +  + +GQ+V + + +++ E  R  +TL + +  C   D      + L E K     
Sbjct: 761  SDATAAFQLGQTVFAKVTNLDEEKRRFLVTLKISEVICPEGDVYTRLINGLQERKAVKEM 820

Query: 858  SSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
             S  +G+EL + +    +G  +   V    D G +   +  +      +   + G  +  
Sbjct: 821  MSSRDGAELAQSLAALSVGERLMLTVDSVKDSGAIFKSDRLTSATVLASKQHMTGVNLTV 880

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            G  + A +L        VDL    V++    +    ++   K  +              A
Sbjct: 881  GQKVSAPVLH-------VDLLSACVYVSVLPKLVGKKKTLNKGYR------------YTA 921

Query: 977  IVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAG 1035
             V+ V  ++ V+SL +        + +  N     + + L+ G++    V+        G
Sbjct: 922  TVQHVDTDFAVVSLGDTAQLAVIQTRNHLNEVVIHESEKLDVGRTFPVQVVEASCEELQG 981

Query: 1036 RLLLLL--KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
              L+    +A     T+S  +A  +  +  G  +Q  +  +KP  +++    G  G +H+
Sbjct: 982  LPLVSWEHRAPQRQRTTSEGQAGSR-GHRFGEFLQGTVRAVKPTCIQVTLEDGSKGSVHV 1040

Query: 1094 TEVNDDKSNVVENL-FSNFKIGQTVTARII----AKSNK--PDMKKSFLW---ELSIKPS 1143
            ++V +     V +   S+ K+G  VTAR+I    A SN+  P     F +   EL++ PS
Sbjct: 1041 SQVVEPSQVRVGSFPTSSVKVGSRVTARVIGGWEASSNRFLPFSHPRFTYTIPELTLIPS 1100

Query: 1144 MLTVS-EIGSKLLFEECDV-SIGQRVTGYVYK--VDNEWALLTISRHLKAQLFILDSAYE 1199
             L  + ++ S    E+ ++   G  +T +V K   D     +T    +   + +L    +
Sbjct: 1101 KLDENVDLPSVSAKEKLELYKAGDEITCFVSKFHADRRSLEVTTDPSVTGTVELLAMITD 1160

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1259
            P +    ++ + +G+AV   V+ +  +     L L     G+               + E
Sbjct: 1161 PKDAGHPEKLYKLGQAVRAKVVEVGVKPSRFVLSL----TGVHK-------------LQE 1203

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVH--FTELKNICVSDPLSGYDEGQFDPLSGY 1317
            G           S   G+V  + P L  +V   F+      V D    Y   Q   LS +
Sbjct: 1204 G-----------SSSLGIVTAVHPQLGLQVKLPFSNTGTASVMDLTDAYRPNQ---LSVF 1249

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
             +GQ V+C +L   +     +H  LSLR      S  NS       D     ++ +++L 
Sbjct: 1250 SKGQLVRCFLLCQEKE---KWH--LSLRP-----SRLNSKQPKAVKDP---EVKTLDELQ 1296

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVL 1434
               I++G+VK+V  +G FI LSR +  +  L   +  +V S     +      L++ +VL
Sbjct: 1297 AGQIIRGFVKSVGEQGVFIRLSRTIIGRAQLQQATQYFVNSHSVLAEHLQPNSLLSTKVL 1356

Query: 1435 SVEPLSKRVEVTLKTSDS 1452
            S++   + VE++L  +D+
Sbjct: 1357 SIDKEKEFVELSLLPADT 1374


>gi|74183408|dbj|BAE36581.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score =  355 bits (911), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 294/1014 (28%), Positives = 491/1014 (48%), Gaps = 83/1014 (8%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF +      +D            V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 188/464 (40%), Gaps = 67/464 (14%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFM 655
            G   R  +GV  +A  S L        +  +  G   KCRI+  S +     ++L  S +
Sbjct: 381  GAIFRLKDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSII 440

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
              P     D  +K+G++V G V  + P  ++V V  +   KG +P+ HLAD      +MK
Sbjct: 441  AAPFLRYHD--IKIGTVVKGTVLAIKPFGILVKVGEQ--IKGLVPSMHLAD-----IMMK 491

Query: 716  SVIK---PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
            +  K   PG E   ++L+ D E+  L+++ K +L+ S   L +      P    HG +  
Sbjct: 492  NPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIR 551

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + + GC V+F   + G  P+ +       D    +Y GQ V+  +L       R+ LS +
Sbjct: 552  VKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611

Query: 832  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                S               K   ++SS+     ++      IG +++ KV E    G+ 
Sbjct: 612  LLSDS-------------RPKDPGVESSQKKTGAVR------IGQLVDVKVLEKTKTGLE 652

Query: 892  VSFEEHSD-------------VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938
            V+   H+                G + HH L     ++G  +   +L ++++ER + L  
Sbjct: 653  VAILPHNTPAFLPTPHLSDHAANGPLLHHWL-----QTGDTLHR-VLCLSQSERHILLCR 706

Query: 939  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 998
            K   +      ++    Q  K   E    +     +   V+ +KE  + +  P     + 
Sbjct: 707  KPALV------STVEGGQDPKSLSEIQPGM----LLIGFVKCIKEYGVFVQFPSGLSGLS 756

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
              ++        P + F+ GQ+V+A V  +  S    R+LL L+
Sbjct: 757  PKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQ--RMLLSLR 798



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 147/708 (20%), Positives = 272/708 (38%), Gaps = 99/708 (13%)

Query: 756  ASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVR 813
            A  + P  ++ G V ++ + G  V   +G    F    KA +  R  +    + VGQ + 
Sbjct: 181  ADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLT 240

Query: 814  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
              + +V S  G ++LS++ S  SS  A+                       E  W    +
Sbjct: 241  CVVEEVKSNGGVVSLSVEHSEVSSAFAT----------------------EEQSWNLNNL 278

Query: 874  IGSV-IEGKVHESNDFGVVVSFEEH-SDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
            +  + ++ +V +   FG+ ++F      +  F+        +  S   ++A IL V    
Sbjct: 279  LPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLEPKKMGSYSSNQTVKACILCVHPRT 338

Query: 932  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 991
            R+V LSL+ +F+   R              R + + LG       +    K    +  L 
Sbjct: 339  RVVRLSLRPIFLHPGRPLT-----------RISYQQLGAVLDDVPVQGFFKNAGAIFRL- 386

Query: 992  EYNHSIGYASVSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 1049
              +  + YA VS  +  K  F  + F  G +    ++   S      LL L K+I     
Sbjct: 387  -KDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDY-SQMDELALLSLRKSIIAAPF 444

Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
                  K      +G++V+  +  IKP  + +K G    G +    + D    +++N   
Sbjct: 445  LRYHDIK------IGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD---IMMKNPEK 495

Query: 1110 NFKIGQTVTARII-----AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
             +  G  V  R++     AK     +KK+ +   + K S++T  E G+K   +   V I 
Sbjct: 496  KYSPGDEVKCRVLLCDPEAKKLIMTLKKTLV---TSKLSLITCYE-GAKPGLQTHGVIIR 551

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
             +  G + K  N+   L     L  Q            + + +  F+ G+ V   VLS  
Sbjct: 552  VKDYGCIVKFYNDVQGLVPKHELSTQ-----------HIPDPETVFYTGQVVKVAVLSCE 600

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
              K+ + L  R   D         S+      +  G +V  ++  +     GL V I PH
Sbjct: 601  PSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKV--LEKTKTGLEVAILPH 658

Query: 1285 -LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
                 +    L +   + PL  +     D L           +VL +S++ R   H+ L 
Sbjct: 659  NTPAFLPTPHLSDHAANGPLLHHWLQTGDTLH----------RVLCLSQSER---HILLC 705

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
             + +L  +S+             G+  + + ++ P M++ G+VK +   G F+     L 
Sbjct: 706  RKPAL--VSTVEG----------GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLS 753

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
                 + +SD +V +P + F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 754  GLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 801



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 48/282 (17%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1449 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             +   T+  S I        G    G I RV+ YG  +   N
Sbjct: 523  KT-LVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN 563



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 29/179 (16%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
            G++V++G  + G V    L +I + +P   Y  G        DE   VKC+VL      +
Sbjct: 467  GILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPG--------DE---VKCRVLLCDPEAK 515

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                  ++L+ +L       +S LS         +   E   P +   G +  V   GC 
Sbjct: 516  KLI---MTLKKTL------VTSKLSL--------ITCYEGAKPGLQTHGVIIRVKDYGCI 558

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDSR 1453
            +     +   V    LS  ++  PE  F  G++V   VLS EP  +R+ ++ +  SDSR
Sbjct: 559  VKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLLSDSR 617


>gi|320165905|gb|EFW42804.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2281

 Score =  350 bits (898), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 358/1341 (26%), Positives = 590/1341 (43%), Gaps = 231/1341 (17%)

Query: 47   PDDDVPVFPRGGGHSLTQRE----RDEIHAEVDAEFEAVER------------------- 83
            PD+    FPRGG   LT RE    RDE  A+ DA F+                       
Sbjct: 112  PDN----FPRGGAAVLTPRELKTARDE--AKDDALFQEANETDDATPMDMDLDEDTPKPK 165

Query: 84   -------GLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMK 136
                      KK+   K K  + A+ + D+ G++               ++ K +  G+ 
Sbjct: 166  TPKKKAAPTPKKSDATKTKPAKAADASEDESGAI-------------EALSFKRLVPGLV 212

Query: 137  LWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-----------LDNEIEANEDNLLPT 185
            L G + EV E DL++ LP  L G  R  D  + +            D+E   ++   L +
Sbjct: 213  LLGAIREVGEIDLLVSLPNALTGSVRITDITEELKTTVAQITAAATDDEDFTDKLPKLAS 272

Query: 186  IFHVGQLVSCIVL----QLDDDKKEIG-------KRKIWLSLRLSLLYKGLSLETVQEGM 234
            +F VG +V C V     ++D+D  E         KR++ L+L  S + + L+ ET+    
Sbjct: 273  MFSVGDVVQCAVSSVEGKVDEDAGESKPASDKPVKRRVHLTLLPSAINRQLTFETILPNQ 332

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDR 289
            ++ A VKS+EDHGY+L  GL     FLP+ N      A  SG  + PG  ++  V S  +
Sbjct: 333  IIPASVKSVEDHGYVLSIGLEGVHAFLPKGNSTAYLKARGSGA-LAPGSYVRCAVVSASK 391

Query: 290  TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 349
              KVV ++ DP  ++  V       S   L+P M V  RV S+  +GV +S+   F GT+
Sbjct: 392  MSKVVTVTVDPAVLTSAVVTATPSASS--LLPDMRVKARVTSVSNSGVRVSY-AGFAGTI 448

Query: 350  DIFHLQNTFPTTNWKNDYNQHKKVN----------ARILFVDPTSRAVGLTLNPYLL-HN 398
            D++HL +T P +  +      + +           ARILFV+ +++ +  T+ P LL H+
Sbjct: 449  DLYHLGDT-PASFAEGGAKTLEAIKELCPVGSELAARILFVNASAKTIAFTIRPGLLTHH 507

Query: 399  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
              P + + +GDI D+++V+  D  LGL+L +P    +   +  IS+++++ +  L KK+ 
Sbjct: 508  VKPATDLHIGDIIDKTRVLTADPQLGLVLHLPVG--NHIGFAHISNLSDDRIGLLGKKFA 565

Query: 459  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
              S  R R++G+  ++GL    L+ S  +        +KPG +V G V+ V   G  VQ 
Sbjct: 566  SNSQHRARVIGYSLIDGLFLVSLQPSVLKLPFLRIEHIKPGSLVTGTVLDVVPAGVTVQL 625

Query: 519  PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAI 576
               ++   P  HMS+ ++ K  K    GA +  RVL V +  +R+ +THKK+LVK+ L I
Sbjct: 626  TDTIRGFIPGSHMSDVQLTKAPKHMSAGASVECRVLEVDTERRRVFLTHKKSLVKTSLPI 685

Query: 577  LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            +++Y EA   L+T G+IT ++ +GC V F+  V  F P+SEL L    +P   +   QV+
Sbjct: 686  VAAYTEAQPGLVTQGFITSVKPNGCVVTFFGKVHAFVPKSELSLG-AADPEKFFKRNQVM 744

Query: 637  KCRIMS--SIPASRRINLSFMMK----PTRVSEDDL---VKLGSLVSGVVDVVTPNAVVV 687
            K RI+        RR+  SF         RVS +     +++GS+VSG V      ++ V
Sbjct: 745  KVRILELDLTGERRRLIASFKWNEESASQRVSSEAFGKDLQVGSIVSGTVTSFDETSLTV 804

Query: 688  YVIAKGYSKG--TIPTEHLADHLEHA-TVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKY 743
             V       G  TIP+  L DH+ H   +++   + G+  D+ LVL   +   + LS K 
Sbjct: 805  LVKDSHGETGSITIPSSQLTDHVCHEKQLLRVYAEKGFVLDRCLVLAKPAPGRIELSLKP 864

Query: 744  SLINSAQQ---LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
            SL+ +A     LP+  S +   +V+ G+V +I   G FV FL  LTG    ++       
Sbjct: 865  SLLEAAASTKVLPA-VSTLATGAVLPGFVKSIQPYGVFVGFLNGLTGLTHLTRLAGHFVT 923

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI---AMLQ 857
              ++ + VGQSV++ +++V+ E  ++TLSL  S  +S+ +S     F  E+      +  
Sbjct: 924  APAEEFAVGQSVKAAVVEVDREDSKLTLSLNDSAVTSSSSSAFVSTFFAEQDTIIRRLCA 983

Query: 858  SSKHNGSEL------KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 911
            ++K + S L      K +        +EG V +    G ++   E   V G+++   LAG
Sbjct: 984  TAKPHESALAIPAARKRLSEIATSITVEGTVTQVKATGAMLDLGE--GVNGWVSKEHLAG 1041

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ--------------- 956
            +       +  A+LDV     LVDLSLK  F+          QA                
Sbjct: 1042 SKPAVNGKLTCAVLDVDPIANLVDLSLKPEFVSASANPFEPLQAHFAAPAPSGTSTPKSK 1101

Query: 957  --KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
                     A+   GV  T++AIVE+VK  YL+LS      S  +AS  D+NT       
Sbjct: 1102 KGAASAAAAATPASGV--TIDAIVELVKPEYLILSSAAAPGSHFFASCKDFNTAVRGAPH 1159

Query: 1015 FLNGQSVIATVMALPSSSTAG----------------------------RLLLLLKAISE 1046
            +  G +V   +  LP++ +A                             R L +++  S 
Sbjct: 1160 YNVGNAVKVLLTRLPAAVSAPAATNKGKGKAAAPAASDSVDVLANLSSRRALAVVQGRSA 1219

Query: 1047 TETSSSKRAKK--------------------KSSYDV--GSLVQAEITEIKPLELRLKFG 1084
               + +                         KS  DV  G +VQ  +     + + +  G
Sbjct: 1220 APAAEATNGHASAAAAATSKRASRPTMDNGFKSVDDVKLGQMVQGAVISTSAMHVNVDLG 1279

Query: 1085 IGFHGRIHITEVND--------------------DKSNVV----ENLFSNFKIGQTVTAR 1120
               H R+ ITE+ D                    D+ NV      N  ++F+ G   +AR
Sbjct: 1280 NKVHARLFITEILDHSHVEQPANKRSTPSHTAAADEVNVATIDRNNPLASFQPGMRFSAR 1339

Query: 1121 IIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            ++   +K                 L EL ++P++L    +    L     ++ GQ + GY
Sbjct: 1340 VVGFLDKHSHTYLPISHTVGGTRKLVELCMRPALLAAQSVE---LITIKSLTQGQLLDGY 1396

Query: 1171 VYKVDNEWALLTISRHLKAQL 1191
            V +V ++   ++++  +K ++
Sbjct: 1397 VDEVRSDKVEVSVTPFIKVRV 1417



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 68/125 (54%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            +  +ED+    I++G+V++   KGCF+ L   +  +VL+SNLSD ++      +  G+LV
Sbjct: 1628 IRSVEDVRVGQILRGFVRHTDEKGCFVNLGVNVVGRVLISNLSDRFLLKWRTAYSTGQLV 1687

Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              +VL+V+   K++E++ +             +L  +  G     ++  VE YG+F+ IE
Sbjct: 1688 TAKVLAVDLAKKQIELSFRKEHIDPEHFVRAVSLKEIEEGQKYNAKVTGVERYGVFVKIE 1747

Query: 1490 NTNLV 1494
            N+++ 
Sbjct: 1748 NSDIA 1752



 Score = 43.9 bits (102), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 21/176 (11%)

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  V+C+VLE+    R  F   L+ + SL              V T    +    +  P 
Sbjct: 653  GASVECRVLEVDTERRRVF---LTHKKSL--------------VKTSLPIVAAYTEAQPG 695

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            ++ QG++ +V   GC +    K+ A V  S LS G  + PEK F   +++  R+L ++  
Sbjct: 696  LVTQGFITSVKPNGCVVTFFGKVHAFVPKSELSLGAAD-PEKFFKRNQVMKVRILELDLT 754

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENTN 1492
             +R  +      +  ++   +++ +   +L VG IV G +   +   L + +++++
Sbjct: 755  GERRRLIASFKWNEESASQRVSSEAFGKDLQVGSIVSGTVTSFDETSLTVLVKDSH 810



 Score = 43.5 bits (101), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 16/132 (12%)

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL-DGMSSTNSSDLSTDVDTPGKHLEKIED 1375
            Y E  FV  + L +++   G   +ELSL+ SL +  +ST             K L  +  
Sbjct: 837  YAEKGFVLDRCLVLAKPAPG--RIELSLKPSLLEAAAST-------------KVLPAVST 881

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   ++ G+VK++   G F+     L     L+ L+  +V +P +EF +G+ V   V+ 
Sbjct: 882  LATGAVLPGFVKSIQPYGVFVGFLNGLTGLTHLTRLAGHFVTAPAEEFAVGQSVKAAVVE 941

Query: 1436 VEPLSKRVEVTL 1447
            V+    ++ ++L
Sbjct: 942  VDREDSKLTLSL 953


>gi|116487529|gb|AAI26004.1| LOC779090 protein [Xenopus laevis]
          Length = 1427

 Score =  349 bits (896), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 356/1390 (25%), Positives = 638/1390 (45%), Gaps = 151/1390 (10%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP- 184
            +S GM   G V    + +L + LP  L G  +A    DA   ++  ++E ++  + L+P 
Sbjct: 76   LSVGMLFLGCVKRTKDFELTVSLPYCLTGYIQATNICDAYTNLISEQVEKDDPLEALVPL 135

Query: 185  -TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
              ++  G LV C +  L+      G   + LS+    + K L+  +++ GMVL+  V S+
Sbjct: 136  SELYSPGMLVRCAISSLETTAS--GFPSVKLSVNPKHVNKALNTGSIKTGMVLSGCVSSV 193

Query: 244  EDHGYILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 298
            EDHGY++  G+     FLPR            G  ++ G  L  VV  +    K+V LS 
Sbjct: 194  EDHGYLVDIGVAGTKAFLPRQKAQLFLSQAGQGSLLRVGEYLNCVVEEVKNEGKIVRLSI 253

Query: 299  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              + V+  +    +  +++ L+PG++   +++ ++ N + LSFL+ +TG VD  H +   
Sbjct: 254  IQNDVASALATVEQNWNLNNLLPGLVFKAQIEKVMHNNITLSFLSSYTGFVDFLHFE--- 310

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPP-SHVKVGDIYDQSK 415
                    Y + ++V A IL++DP+++ + LTL    L   N  P  +   VG + D   
Sbjct: 311  --PKKIGSYKEGQEVKACILWLDPSTKTIRLTLRQCFLQPGNTLPQLTSDWVGSVLDNCV 368

Query: 416  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
            V  + +  G + ++    +       +S   +       +K+K+G+  + RI  F  ++ 
Sbjct: 369  VQTLFKNAGAVFELEGGNLGFAFKHHLSASKQPHF----EKFKKGTTHKGRITDFSPMDE 424

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            +    LK      L   H D++PG V++G V  +++ G +VQ    +  L P  H ++  
Sbjct: 425  MHILSLKEKVITNLFLRHEDIQPGQVLEGTVKCMEAVGMVVQITDHLTGLVPKLHFADVL 484

Query: 536  IVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            +  P KK+ +G ++  +VL V +  +++ +T K+TL+KS L +L+SY +A   LITHG+I
Sbjct: 485  LKHPEKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDAQPGLITHGFI 544

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
              I+ +GC V+FYN VQG APR ELG L         ++ GQV+K +++   P ++++ L
Sbjct: 545  VAIKDYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLECNPQTQQLLL 604

Query: 653  SFMMKPTRVSEDD--------LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            SF +     +E +         VKL  G LV   V   T   V V V+ +  S   IP  
Sbjct: 605  SFRITEEGHTEQEQRFLKKIKAVKLDVGKLVDIRVLSKTDKGVNVLVLPE-ESPAFIPKM 663

Query: 703  HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH 760
            HL+DH+ +  ++   ++ G +    + L +   + +L+ K  LI+S ++       S + 
Sbjct: 664  HLSDHVSNCELLWHTLQEGDDIPGAMCLSSLKGHSILTKKSLLISSVEKGSCVKVISEVQ 723

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
                + G+V +I+  G FV F   L G  P S+  D    ++   +  G +V + ++ ++
Sbjct: 724  TGMHLTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVIKMD 783

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSELKWVEGFII 874
             E  R  L+LK S C+  D S ++  FLL +  + LQ      + K +  +   +   I 
Sbjct: 784  EEKKRFLLTLKMSECAPDDYS-IEGLFLLSQCFSELQLMKGLLARKGDPEDELSIYTLIA 842

Query: 875  GSVIEGKVHESNDFGVVVSFEEHSDVYGF----ITHHQLAGATVESGSVIQAAILDVAKA 930
            G  +   V  + + G  V F   S + G      T + +    + +G  ++A +L V   
Sbjct: 843  GQKLTLVVENAEENG-PVQFSAGS-ISGAQTVSATQYHIGDKALVAGQKVKAVVLHVDML 900

Query: 931  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 990
               V +SL    +               K+K+   K    H   +A V+ V E + V+SL
Sbjct: 901  TLHVHVSLNQTLL---------------KKKQNVPKMNSSH---SADVQHVAEEFAVVSL 942

Query: 991  PEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-KAISETE 1048
             +  H I     S  N T +F  ++   G++ I+ ++   + +  G LL +  KA S+T 
Sbjct: 943  ADSAHLIAVPVSSHLNDTFRFESEKLKVGET-ISVILKTTTVNEHGLLLAVQNKAASKTS 1001

Query: 1049 ------TSSSKRAKKKSSY--DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
                  T S+ R +   S+   +G LV   +  IKP ++ +       G IH++++ D+ 
Sbjct: 1002 KNLGRTTQSAMRVRGAISHGLKIGDLVTGTVKSIKPTQVTVSINDNVFGFIHVSQIMDET 1061

Query: 1101 SNVVENLFSNFKIG--QTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVS 1148
                +  F   K+   Q VT R+I     K+++      PD   S + ELS+ P ++   
Sbjct: 1062 P---QGCFPTSKLNPKQEVTCRVIGGREVKTHRYLPITHPDFIHS-VPELSLLPELINTD 1117

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEF 1206
             +      +    + G +VT YV K + E   L   I+  ++ ++ +L  +  P  L+  
Sbjct: 1118 NVPKPRALK--TFNPGDKVTCYVNKFNTETKYLEVEITPEIRGRIELLLLSQTPKNLKRP 1175

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            ++ F  G+A++  V+  +   K L L L     GI               + EG +    
Sbjct: 1176 EKLFKNGQALSATVVGPDAVHKHLCLSL----TGIHS-------------LEEGAVTVAC 1218

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1326
            ++K++ G  GL + +    +G+     + ++C       Y E     L  +  G+FV+C 
Sbjct: 1219 VTKVVKG-SGLTLSLP---FGKTGNANMFHLC-----DKYAEAS---LEKFTPGKFVRCA 1266

Query: 1327 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1386
            +L  S+ V+      +SLR      S  N    S+ VD   + +  I+ L    +V G+V
Sbjct: 1267 ILSNSKIVK------VSLRQ-----SRVNQQAQSSAVD---EDIASIDSLEEGQLVSGFV 1312

Query: 1387 KNVT-SKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKR 1442
              +T +KG F  LS  +   +   N++  +V  P       P G L+  +VLS++P  K 
Sbjct: 1313 SAITENKGVFFRLSSFIVGHIQFQNVTSYFVYEPSAYSNYIPEGTLLTAKVLSIDPDKKH 1372

Query: 1443 VEVTLKTSDS 1452
            VE++L  +D+
Sbjct: 1373 VELSLLPTDT 1382


>gi|191256845|ref|NP_001122095.1| programmed cell death 11 [Xenopus laevis]
 gi|189441690|gb|AAI67486.1| LOC779090 protein [Xenopus laevis]
          Length = 1812

 Score =  348 bits (894), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 356/1390 (25%), Positives = 638/1390 (45%), Gaps = 151/1390 (10%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP- 184
            +S GM   G V    + +L + LP  L G  +A    DA   ++  ++E ++  + L+P 
Sbjct: 76   LSVGMLFLGCVKRTKDFELTVSLPYCLTGYIQATNICDAYTNLISEQVEKDDPLEALVPL 135

Query: 185  -TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
              ++  G LV C +  L+      G   + LS+    + K L+  +++ GMVL+  V S+
Sbjct: 136  SELYSPGMLVRCAISSLETTAS--GFPSVKLSVNPKHVNKALNTGSIKTGMVLSGCVSSV 193

Query: 244  EDHGYILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 298
            EDHGY++  G+     FLPR            G  ++ G  L  VV  +    K+V LS 
Sbjct: 194  EDHGYLVDIGVAGTKAFLPRQKAQLFLSQAGQGSLLRVGEYLNCVVEEVKNEGKIVRLSI 253

Query: 299  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              + V+  +    +  +++ L+PG++   +++ ++ N + LSFL+ +TG VD  H +   
Sbjct: 254  IQNDVASALATVEQNWNLNNLLPGLVFKAQIEKVMHNNITLSFLSSYTGFVDFLHFE--- 310

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPP-SHVKVGDIYDQSK 415
                    Y + ++V A IL++DP+++ + LTL    L   N  P  +   VG + D   
Sbjct: 311  --PKKIGSYKEGQEVKACILWLDPSTKTIRLTLRQCFLQPGNTLPQLTSDWVGSVLDNCV 368

Query: 416  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
            V  + +  G + ++    +       +S   +       +K+K+G+  + RI  F  ++ 
Sbjct: 369  VQTLFKNAGAVFELEGGNLGFAFKHHLSASKQPHF----EKFKKGTTHKGRITDFSPMDE 424

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            +    LK      L   H D++PG V++G V  +++ G +VQ    +  L P  H ++  
Sbjct: 425  MHILSLKEKVITNLFLRHEDIQPGQVLEGTVKCMEAVGMVVQITDHLTGLVPKLHFADVL 484

Query: 536  IVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            +  P KK+ +G ++  +VL V +  +++ +T K+TL+KS L +L+SY +A   LITHG+I
Sbjct: 485  LKHPEKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDAQPGLITHGFI 544

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
              I+ +GC V+FYN VQG APR ELG L         ++ GQV+K +++   P ++++ L
Sbjct: 545  VAIKDYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLECNPQTQQLLL 604

Query: 653  SFMMKPTRVSEDD--------LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            SF +     +E +         VKL  G LV   V   T   V V V+ +  S   IP  
Sbjct: 605  SFRITEEGHTEQEQRFLKKIKAVKLDVGKLVDIRVLSKTDKGVNVLVLPE-ESPAFIPKM 663

Query: 703  HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH 760
            HL+DH+ +  ++   ++ G +    + L +   + +L+ K  LI+S ++       S + 
Sbjct: 664  HLSDHVSNCELLWHTLQEGDDIPGAMCLSSLKGHSILTKKSLLISSVEKGSCVKVISEVQ 723

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
                + G+V +I+  G FV F   L G  P S+  D    ++   +  G +V + ++ ++
Sbjct: 724  TGMHLTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVIKMD 783

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSELKWVEGFII 874
             E  R  L+LK S C+  D S ++  FLL +  + LQ      + K +  +   +   I 
Sbjct: 784  EEKKRFLLTLKMSECAPDDYS-IEGLFLLSQCFSELQLMKGLLARKGDPEDELSIYTLIA 842

Query: 875  GSVIEGKVHESNDFGVVVSFEEHSDVYGF----ITHHQLAGATVESGSVIQAAILDVAKA 930
            G  +   V  + + G  V F   S + G      T + +    + +G  ++A +L V   
Sbjct: 843  GQKLTLVVENAEENG-PVQFSAGS-ISGAQTVSATQYHIGDKALVAGQKVKAVVLHVDML 900

Query: 931  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 990
               V +SL    +               K+K+   K    H   +A V+ V E + V+SL
Sbjct: 901  TLHVHVSLNQTLL---------------KKKQNVPKMNSSH---SADVQHVAEEFAVVSL 942

Query: 991  PEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-KAISETE 1048
             +  H I     S  N T +F  ++   G++ I+ ++   + +  G LL +  KA S+T 
Sbjct: 943  ADSAHLIAVPVSSHLNDTFRFESEKLKVGET-ISVILKTTTVNEHGLLLAVQNKAASKTS 1001

Query: 1049 ------TSSSKRAKKKSSY--DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
                  T S+ R +   S+   +G LV   +  IKP ++ +       G IH++++ D+ 
Sbjct: 1002 KNLGRTTQSAMRVRGAISHGLKIGDLVTGTVKSIKPTQVTVSINDNVFGFIHVSQIMDET 1061

Query: 1101 SNVVENLFSNFKIG--QTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVS 1148
                +  F   K+   Q VT R+I     K+++      PD   S + ELS+ P ++   
Sbjct: 1062 P---QGCFPTSKLNPKQEVTCRVIGGREVKTHRYLPITHPDFIHS-VPELSLLPELINTD 1117

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEF 1206
             +      +    + G +VT YV K + E   L   I+  ++ ++ +L  +  P  L+  
Sbjct: 1118 NVPKPRALK--TFNPGDKVTCYVNKFNTETKYLEVEITPEIRGRIELLLLSQTPKNLKRP 1175

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            ++ F  G+A++  V+  +   K L L L     GI               + EG +    
Sbjct: 1176 EKLFKNGQALSATVVGPDAVHKHLCLSL----TGIHS-------------LEEGAVTVAC 1218

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1326
            ++K++ G  GL + +    +G+     + ++C       Y E     L  +  G+FV+C 
Sbjct: 1219 VTKVVKG-SGLTLSLP---FGKTGNANMFHLC-----DKYAEAS---LEKFTPGKFVRCA 1266

Query: 1327 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1386
            +L  S+ V+      +SLR      S  N    S+ VD   + +  I+ L    +V G+V
Sbjct: 1267 ILSNSKIVK------VSLRQ-----SRVNQQAQSSAVD---EDIASIDSLEEGQLVSGFV 1312

Query: 1387 KNVT-SKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKR 1442
              +T +KG F  LS  +   +   N++  +V  P       P G L+  +VLS++P  K 
Sbjct: 1313 SAITENKGVFFRLSSFIVGHIQFQNVTSYFVYEPSAYSNYIPEGTLLTAKVLSIDPDKKH 1372

Query: 1443 VEVTLKTSDS 1452
            VE++L  +D+
Sbjct: 1373 VELSLLPTDT 1382


>gi|303291157|ref|XP_003064865.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453891|gb|EEH51199.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 2229

 Score =  346 bits (888), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 251/840 (29%), Positives = 402/840 (47%), Gaps = 140/840 (16%)

Query: 129 KNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA----------- 177
           K +  G KL GVV +VN+  + + LP GLRG    A+A D  +  + +            
Sbjct: 93  KTLRVGTKLMGVVVDVNDAGMSLSLPNGLRGSVTRAEASDAFVAAKKKKKTTKMTKMKKK 152

Query: 178 ---------------------------NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR 210
                                           L  +F VGQ++  +V++    K + G +
Sbjct: 153 TADSSESESESESESDESDSDDDDEALTNAEPLAALFKVGQILRAVVVR--SGKGKSGGK 210

Query: 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAEN 269
           +I LS RLS +  G++ + + +G  + A V  +E HG++L+FG+  +  GFLPR ++   
Sbjct: 211 RIDLSTRLSRVCDGVAKDALVDGAAVPACVTGVEAHGFVLNFGIDDAPIGFLPRKSVRAE 270

Query: 270 SGIDVKPGLLLQGVV----------------------RSIDRTRKVVYLSSDPDTVSKCV 307
               +  G +L  V+                      R++    +VV  ++D   VS  V
Sbjct: 271 MASSLARGAILDVVINASAGPGGDGGNGEDGGGKEKKRALVTNSRVVQCTADAKRVSSAV 330

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN---------TF 358
           T++    S+  L+PGM+V+ RV+++L +G+ ++F+TYFT T+D FHL +           
Sbjct: 331 TRESDYTSMQSLLPGMLVNARVRAVLSDGISVNFMTYFTATIDAFHLGDGKGTDGKHLNG 390

Query: 359 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA-------------PPSHV 405
           PT +    +    +  AR+LFVD  ++ +GLTL P+L+  +A             P SH+
Sbjct: 391 PTPDVSKTHKVGDRCRARVLFVDADAKRIGLTLRPHLVSPQAVSVQPSSTETGGDPLSHL 450

Query: 406 ---KVGDIYDQSKVVRVDRGLGLLLDIP-STPVSTP--------------------AYVT 441
              K G  YD + V RVD  +G+LL++P S   + P                     YV 
Sbjct: 451 NLPKPGTSYDAAIVRRVDANVGVLLELPPSGAAAAPTDDESRMGKQSYSPPKGACLGYVH 510

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           ISD  ++ + +LEKK+K G+ VR R++G R ++G+AT   K +  E    +  ++ PGM 
Sbjct: 511 ISDATDDHIERLEKKFKVGATVRARVIGRRVVDGVATASCKKTVVEQPFLSLDELTPGMK 570

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSK 559
           VKG+V+AV+ +GA+++   GVKAL P  H+S+        K   GA L FRVL   V   
Sbjct: 571 VKGEVVAVEPYGAVIKLAPGVKALLPPHHVSDIPGRTTNAKVCPGARLNFRVLSVDVARS 630

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDR--LITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           R TVT KKT++ S L ++++  +AT      THG +T +E +G FV  Y  ++G A   +
Sbjct: 631 RATVTRKKTILNSDLDVIATMEDATRAGGATTHGVVTGVEPYGVFVSLYGALRGLAGAQD 690

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM------------------MKPT 659
           LGL PG  P+  + VGQ V+ R++ +     ++ LS                        
Sbjct: 691 LGLAPGQTPTEAFQVGQCVRARVIRADNGPGKLKLSLAPGGSGDGVVLHDDEGGGGGGGG 750

Query: 660 RVSEDDLVKLGSLV-SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 718
           R+ +      G+++ S VV  V  +   V V   G   G I   H++DH      + +  
Sbjct: 751 RLDDVGAPPPGTIIESAVVKRVDADTGNVLVTLPGGVPGVITAAHVSDHPVTGAALVATY 810

Query: 719 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIE-T 775
            P      L+ L+ +    +LS K SL+ +A+   LP+  + +   +   GYV +  +  
Sbjct: 811 APDDAIGPLVALEAKPRRSILSRKTSLVTAARSDALPASVADVVVGASYPGYVASATQNA 870

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQR---ADLSKTYYVGQSVRSNI--LDVNSETGRITLSL 830
           G FVRFLGRLTG AP S+ V G R   AD  + +  GQSVR+ +  +D   +  R++LSL
Sbjct: 871 GVFVRFLGRLTGLAPPSQLVPGARGGDADPEECFAPGQSVRARVTAVDATVDPPRLSLSL 930



 Score =  128 bits (321), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 20/234 (8%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G  +GG ++K+LS  GG+ VQ+     GRVH T+L +        G  E Q +P   Y  
Sbjct: 1434 GAKLGGIVTKVLSHGGGVFVQLNGRQRGRVHVTDLSDA------PGSAESQGEPWKKYAP 1487

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  V  +VL +         ++LS R+S    + T   D           +E  + L+P 
Sbjct: 1488 GDAVDVRVLRVDED---DGEIDLSTRASDMKRARTGRYDKLA--------IETCDQLTPG 1536

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
              V G+VK  T  GCF+ L R +DA+V L NLS+ +V+ P K FP G LV G VLSV+  
Sbjct: 1537 TKVAGFVKQCTKGGCFVALGRTVDARVKLCNLSNEFVDDPPKAFPKGALVTGTVLSVDAE 1596

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITIEN 1490
            ++RVE+TL+         + +N          G +++G ++RV++YG+F+T+++
Sbjct: 1597 NERVEITLRADGGDGGGAAAVNAPPTGDAPDEGAVLMGTVRRVQTYGVFVTLDD 1650



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)

Query: 875  GSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE----------SGSVIQAA 923
            GS I   VH + ++GV++   +  SD+   +  HQ   A  +           G+ +   
Sbjct: 1018 GSSISCVVHATREYGVLMDVPDVDSDLVALMAFHQTPAAADDDDDDAAPPPDEGTKVNGV 1077

Query: 924  ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH-----------Q 972
            +LDV++ + +VD+  +   +   +   S ++ + KK +     D               +
Sbjct: 1078 VLDVSRRDGVVDVGARPGLLAMMKPGPSPKKTRSKKTRGGGGGDASTTYLPPPRPKKGTE 1137

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 1006
            TV A+VE+VK  Y+VLSLP++  +IGY +    N
Sbjct: 1138 TV-AVVELVKPEYVVLSLPKHGGAIGYCAARSVN 1170



 Score = 45.1 bits (105), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 1088 HGRIHITEVNDDKSNVVEN--LFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
             GR+H+T+++D   +       +  +  G  V  R++ + ++ D +     +LS + S +
Sbjct: 1460 RGRVHVTDLSDAPGSAESQGEPWKKYAPGDAVDVRVL-RVDEDDGE----IDLSTRASDM 1514

Query: 1146 TVSEIG--SKLLFEECD-VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1202
              +  G   KL  E CD ++ G +V G+V +       + + R + A++ + + + E   
Sbjct: 1515 KRARTGRYDKLAIETCDQLTPGTKVAGFVKQCTKGGCFVALGRTVDARVKLCNLSNE--F 1572

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            + +  + F  G  VTG VLS++ E + + + LR
Sbjct: 1573 VDDPPKAFPKGALVTGTVLSVDAENERVEITLR 1605


>gi|149040333|gb|EDL94371.1| programmed cell death protein 11 (predicted) [Rattus norvegicus]
          Length = 964

 Score =  342 bits (877), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 292/1015 (28%), Positives = 478/1015 (47%), Gaps = 113/1015 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNK--------KKKKKTERKANET 103
            FPRGG     + E+  +   E D  F+ + E G  K+ K        KK K  +RK+N++
Sbjct: 8    FPRGGTRKPHKSEKSSQPVVEQDNLFDISTEEGSVKRKKSQKGPAKTKKLKIEKRKSNKS 67

Query: 104  VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
            + +   +               ++L+++  GM++ G V EVNE +LV+ LP GL+G  + 
Sbjct: 68   MKEKFEI---------------LSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQV 112

Query: 164  ADALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSL 216
             +  D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+
Sbjct: 113  TEICDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSV 170

Query: 217  RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSG 271
                + K LS E ++ GM+LT  V S+EDHGY++  G+     FL      E     N G
Sbjct: 171  NPKRVNKVLSAEALRPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKG 230

Query: 272  IDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 331
               K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ 
Sbjct: 231  AKFKVGQYLTCVVEELKSNGGVVSLSVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQK 290

Query: 332  ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
            + + G+ L+FLT+FTG VD  HL+           Y+  + V A IL V P +R V L+L
Sbjct: 291  VTQFGLQLNFLTFFTGLVDFMHLE-----PKKMGSYSSKQTVKACILCVHPRTRVVRLSL 345

Query: 392  NPYLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
             P  LH   P + +   ++G + D + V       G +  +    +   AY  +S +++ 
Sbjct: 346  RPIFLHPGRPLTRISYQQLGTVLDDASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDS 402

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
            +     + +K GS  R RI+ +  ++ LA   L+ S        + D+K G +VKGKV+A
Sbjct: 403  KKAFSAEAFKLGSTHRCRIIDYSQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLA 462

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
            +  FG +V+    ++ L P  H+++  +  P KKF  G E+  RVL    ++K++ +T K
Sbjct: 463  LKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
            KTLV SKL  ++ Y +A   L THG I +++ +GC V+FYN VQG  P+ EL      +P
Sbjct: 523  KTLVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDP 582

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----------LGSLVSGV 676
              +++ GQVVK  +++  P+  R+ LSF +      +D+ VK           G LV   
Sbjct: 583  ERVFYTGQVVKVAVLNCEPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVK 642

Query: 677  VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN 736
            V   T N + V ++        +PT HL+DH+ +  ++   ++                 
Sbjct: 643  VLEKTKNGLEVAILPHNIP-AFLPTPHLSDHVANGPLLHHWLQ----------------- 684

Query: 737  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
                          Q P   S I P  ++ G+V +I + G FV+F   L+G +P++   D
Sbjct: 685  ---------TVEGGQDPKSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSD 735

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKI 853
                  S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE  
Sbjct: 736  KFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQ 795

Query: 854  AMLQ-SSKHNGSELKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAG 911
             +    S  +   ++ +     G V++  V E  + G VV       D+    + +  AG
Sbjct: 796  GIRSLMSNQDSVLIQTLADMTPGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAG 855

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +E G   +  +L V   +  V +SL    ++R           K ++ R+ S+    H
Sbjct: 856  QELEPGQKKKVVVLHVDALKLEVHVSLHQDLVNR-----------KARKLRKNSR----H 900

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
            Q    IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+
Sbjct: 901  Q---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 952



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 34/241 (14%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  G IV G++  +     G++V++G  + G V    L +I + +P   ++ G       
Sbjct: 450  IKTGTIVKGKVLALKPF--GMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG------- 500

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
             DE   VKC+VL      +      ++L+ +L              V +    +   ED 
Sbjct: 501  -DE---VKCRVLLCDPEAKKLI---MTLKKTL--------------VTSKLPAITCYEDA 539

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
             P +   G +  V   GC +     +   V    LS  ++  PE+ F  G++V   VL+ 
Sbjct: 540  KPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNC 599

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNL----SNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            EP  +R+ ++ K           + N     S ++ G +V  ++      GL + I   N
Sbjct: 600  EPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHN 659

Query: 1493 L 1493
            +
Sbjct: 660  I 660



 Score = 44.3 bits (103), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 47/85 (55%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            G+  + + ++ P M++ G+VK++   G F+     L      + +SD +V +P + F  G
Sbjct: 689  GQDPKSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEG 748

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSD 1451
            + V  +V +V+   +R+ ++L+ SD
Sbjct: 749  QTVVAKVTNVDESKQRMLLSLRLSD 773



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            + +D+    IV+G V  +   G  + +  ++   V   +L+D  +++PEK+F  G  V  
Sbjct: 446  RYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKC 505

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            RVL  +P +K++ +TLK +   T+    I    +   G    G I RV+ YG  +   N
Sbjct: 506  RVLLCDPEAKKLIMTLKKT-LVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYN 563


>gi|301614745|ref|XP_002936843.1| PREDICTED: protein RRP5 homolog [Xenopus (Silurana) tropicalis]
          Length = 1818

 Score =  340 bits (872), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 367/1495 (24%), Positives = 672/1495 (44%), Gaps = 210/1495 (14%)

Query: 54   FPRGGGHSLTQRERDE-----------------IHAEVDAEFEAVERGLHKKNK--KKKK 94
            FPRGG    TQ++ D+                  H E + E +  ++  H+K K   ++K
Sbjct: 5    FPRGG----TQKKTDQKTVKKRPKENDGNLFSTYHEENEQEIKKKKKVFHEKPKAASQEK 60

Query: 95   KTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLP 154
                 A ETV+             +P+Y      KN+S GM   G V +  + +L + LP
Sbjct: 61   SVTTAAKETVE-------------IPQY------KNLSVGMMFLGCVKQAKDFELAVSLP 101

Query: 155  GGLRGLARA---ADALDPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEI 207
              L G  +A    +A   ++  +++ ++  + L P   ++  G LV C +  L+      
Sbjct: 102  YCLTGYIQATNICEAYTKLIGEQVKKDDPMEALTPLSELYSPGMLVRCAISSLETTTS-- 159

Query: 208  GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
            G   + LS+    + K L+  +++ GM+++  V S+EDHGY++  G+     FLPR    
Sbjct: 160  GCNSVKLSINPKHVNKALTTGSLKAGMLVSGCVSSVEDHGYLVDIGVTGSKAFLPRQKAQ 219

Query: 268  -----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPG 322
                    G  ++ G  L  V++ +    ++V LS   + V+  +    +  +++ L+PG
Sbjct: 220  LFLNQAGKGPLLRIGQYLNCVIQEVKNEGRIVRLSITQNDVTGALATMEQNWTLNNLLPG 279

Query: 323  MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP 382
            +++  +++ + ++ + LSFL+ +TG VD  H +           Y + ++V A IL++DP
Sbjct: 280  LVLKAQIEKVTQSSITLSFLSSYTGFVDFLHFE-----PKKIGSYKEGQEVKACILWLDP 334

Query: 383  TSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLL--LDIPSTPVSTP 437
            +++++ LTL         P   +    VG + +   V  + R  G +  LD  +   +  
Sbjct: 335  STKSIRLTLRQCFQQPGNPLPQLTSDWVGSVLENCMVQTLVRNAGAIFELDGGNLGFAFK 394

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
              ++ S   + E+      +K+G+  + RI  F  +E +    L+      L   H D++
Sbjct: 395  HNLSASKHPDNEI------FKKGTAHKGRIKEFSPMEEMHFLSLREKMITDLFLRHEDIQ 448

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV- 556
             G V++G + ++++ G +V+    +  L P  H ++  +  P KK+ +G ++  +VL V 
Sbjct: 449  AGQVLEGTIQSLEAVGLVVKITDHLTGLVPKLHFADVLLKHPEKKYIIGNKIKCKVLTVI 508

Query: 557  -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
               +++ +T KKTL+KSKL I++S+ +A   LITHG+I  I+ +GC V+F+N VQG APR
Sbjct: 509  TSERKLILTRKKTLMKSKLPIIASFDDAQPGLITHGFIVAIKDYGCIVKFFNEVQGLAPR 568

Query: 616  SELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-------------MMKPTRV 661
             ELG L         ++ GQV+K R++   P ++++ LSF              +K T+ 
Sbjct: 569  RELGSLQEISSLEDAFYRGQVIKVRVLDCNPQTQKLLLSFRITEEGETEQEQRYLKKTKA 628

Query: 662  SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
             + D   +G +V   V   T   V V ++ +  S   IP  HL+DH+ +  ++   ++ G
Sbjct: 629  VKLD---VGKVVDTRVVSKTDKGVNVLILPE-ESPAFIPKMHLSDHISNCELLWHALEEG 684

Query: 722  YEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                 ++ L     + +L+ K  LI+S ++       S +     + G+V +I+  G FV
Sbjct: 685  DNIPGVMCLSTFKGHHILTKKAVLISSFEKGSCVKVISEVQTGMHLTGFVKSIMPYGAFV 744

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             F   L G  P+S+  D    ++S   + GQ+V + ++  + E  R  L+LK S C+ +D
Sbjct: 745  EFPYGLFGLVPKSEISDKFVTNISDHLFEGQTVLAKVIKTDEEKQRFLLTLKMSECAPSD 804

Query: 840  ASFMQEHFLLEEKIAMLQSSK----HNGSELKWVEGFIIGS------VIE-----GKVHE 884
             S  +   LL +  + LQ  K      G     +  + + S      V+E     G VH 
Sbjct: 805  CS-AEGLLLLSQCFSELQLLKGLLSRKGDPEDELSIYTLTSGQKLTLVVENAEENGPVHF 863

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
            S   G +   +  S      TH+ +   T  +G  ++A +L V   +  V +SL    + 
Sbjct: 864  ST--GSITGAQTVS-----ATHNNIGDETPIAGQKVKAVVLHVDLLKLHVYVSLNEALL- 915

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 1004
                          K+K+   K    H   +A V  V E + V+SL    H       S 
Sbjct: 916  --------------KKKKNVPKMNSSH---SADVLHVAEEFAVVSLTGPAHLAAVPMSSH 958

Query: 1005 YN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS--- 1060
             N T  F  ++   G+++  TV+   +S     LLL ++  S  +TS ++   K+S    
Sbjct: 959  LNDTFHFESEKLKVGETI--TVILKATSVNEQGLLLAVQNKSALKTSKNQGQTKQSDVKT 1016

Query: 1061 -------YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 1113
                     VG LV   +  IKP ++ +       G IH++++ +D + +     S    
Sbjct: 1017 SGFMAHGLKVGDLVSGTVKSIKPTQVIVSINDNVCGFIHVSQITED-TPLGSFPTSKLSP 1075

Query: 1114 GQTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
             Q VT R+I     KS++      PD   S L ELSI P ++       K    +   + 
Sbjct: 1076 KQEVTGRVIGGREVKSHRYLPITHPDFIHS-LPELSILPGLINKDNKVPKPRPLKT-FTP 1133

Query: 1164 GQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            G++VT Y+  Y  + ++  + I+  ++ ++ +L  +  P  L+  ++ F  G++++  V+
Sbjct: 1134 GEKVTCYINKYNTEKKYLEVEITPQIRGRIELLLLSQTPKNLKRPEKLFKNGQSLSATVV 1193

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
              +   K L L L     GI               + EG +    ++K++ G  GL + +
Sbjct: 1194 GPDATHKHLCLSL----TGIYS-------------LEEGSVTMASVTKVVKG-SGLTLSL 1235

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1341
                 G      L +         Y E   D    +  G+ V+C +L +S+T++ +    
Sbjct: 1236 PFGKTGEASIFHLHD--------NYTEASLDK---FTPGKIVRCAILSVSKTIKVSL--- 1281

Query: 1342 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSR 1400
              ++S ++  +S ++ D         K +   + L    +V G+V  VT +KG F  LS 
Sbjct: 1282 --MQSKINQQASKSTDD---------KEITSFDSLEEGQLVTGFVSAVTQNKGVFFRLSS 1330

Query: 1401 KLDAKVLLSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
             +   +   N++  +V    +  K  P G L+  +VLSV+P  K VE++L  SD+
Sbjct: 1331 SIVGHIQFRNITSYFVYDTSAYSKYIPEGTLLTAKVLSVDPEQKHVELSLLPSDT 1385



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 31/240 (12%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
            K P+K F NGQS+ ATV+     +T   L L L  I               S + GS+  
Sbjct: 1176 KRPEKLFKNGQSLSATVVG--PDATHKHLCLSLTGIY--------------SLEEGSVTM 1219

Query: 1069 AEITEI-KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKS 1125
            A +T++ K   L L    G  G   I  ++D   N  E     F  G+ V   I  ++K+
Sbjct: 1220 ASVTKVVKGSGLTLSLPFGKTGEASIFHLHD---NYTEASLDKFTPGKIVRCAILSVSKT 1276

Query: 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTIS 1184
             K  + +S + + + K +     EI S    EE     GQ VTG+V  V  N+     +S
Sbjct: 1277 IKVSLMQSKINQQASKST--DDKEITSFDSLEE-----GQLVTGFVSAVTQNKGVFFRLS 1329

Query: 1185 RHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
              +   + F   ++Y   +   + +    G  +T  VLS++ E+K + L L P   G  D
Sbjct: 1330 SSIVGHIQFRNITSYFVYDTSAYSKYIPEGTLLTAKVLSVDPEQKHVELSLLPSDTGKPD 1389


>gi|403260160|ref|XP_003922550.1| PREDICTED: protein RRP5 homolog [Saimiri boliviensis boliviensis]
          Length = 1838

 Score =  338 bits (868), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 385/1481 (25%), Positives = 660/1481 (44%), Gaps = 202/1481 (13%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKVPAKTKKLKMEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L   ++  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLFHLPELFSPGMLVRCVVSSLGVTER--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RNNLAENSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP      N   +N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQENIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV+LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEEVKGNGGVVHLSIGHSEVSAAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            +ML+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LMLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVKACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P S +    +G + +   V    +  G +  +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLSRLSCQHLGAVLNDVPVHGFFKKAGAIFRLKDGVL---AYARLSHLSDSKNVFS 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG VVKG V+ +  +G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGAVVKGTVLTIKPYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSK 573
             +V+    ++ L P  H+++  +  P KK+ +G E       VK +RI  + K       
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDE-------VKCRRINSSTK------- 513

Query: 574  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
              +++ +   + RL       ++       R  +G    A RS   +   C    ++H  
Sbjct: 514  --VVNWFIIGSVRLDAKPARKEL-------RCTSGRH--AARSAGRVGQAC---VVFH-- 557

Query: 634  QVVKCRIMSSIPASRRINLSFMM----KPTR------VSEDDLVKLGSLVSGVVDVVTPN 683
            QVVK  +++S P+  R+ LSF +    +P +        +   + +G LV   V   T +
Sbjct: 558  QVVKVAVLNSEPSKERMLLSFKLLRDPEPKKEPAGHNQKKGKAINVGQLVDVKVLEKTKD 617

Query: 684  AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY 743
             + V V+    +   +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  K 
Sbjct: 618  GLEVAVLPHN-TCAFLPTSHLSDHVTNGPLLHHWLQAGDTLHRVLCLSQSEGHILLCRKP 676

Query: 744  SLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D     
Sbjct: 677  ALVSAVEGGQDPKNFSEIHPGMLLVGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTS 736

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS- 858
             S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      L +  E++  ++S 
Sbjct: 737  TSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSL 796

Query: 859  -SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
             S  +   ++ +     G  ++  V E   D  VV S     ++    + +   G  VES
Sbjct: 797  MSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPNLVLRASRYHRGGQEVES 856

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            G   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ   A
Sbjct: 857  GQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ---A 898

Query: 977  IVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAG 1035
            IV+ +++++ + SL    H + ++  S  N T +F  ++   GQ V  T+       T  
Sbjct: 899  IVQHLEKSFAIASLVATGHLVAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG- 957

Query: 1036 RLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEIKP 1076
             LLL ++  +   T    R                     KK +  +G +V   +  IKP
Sbjct: 958  -LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKP 1016

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL 1135
              + +    G  G IH + + DD         +  K+G+TVTAR+I      DMK   FL
Sbjct: 1017 THVVVTLKDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMKTFKFL 1072

Query: 1136 -----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNE 1177
                        ELS++PS L    T     S    E+      GQ VT ++  Y V  +
Sbjct: 1073 PISHPRFVRTVPELSVRPSELEDGHTALNTDSVSPMEKIKQYQAGQTVTCFLKKYNVVKK 1132

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  LRL L   
Sbjct: 1133 WLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLRLSL--- 1189

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
                      I    ++    EG++  GR+ K+     GL V      +G++    L   
Sbjct: 1190 ----------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSL--F 1229

Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
             VSD  S        PL  +   + V+C +L     V     + LSLR      SS  + 
Sbjct: 1230 HVSDSYSEM------PLEDFVPQKVVRCYILSAEDNV-----LTLSLR------SSRTNP 1272

Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1417
            +  + V+ P   +  I+D+    +++GYV+++   G F  L   +   V L+        
Sbjct: 1273 ETKSKVEDP--EINSIQDIKEGQLLRGYVRSIQPHGVFFGLGPSV---VGLARYPYVSQH 1327

Query: 1418 SPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1328 SPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1368


>gi|108742058|gb|AAI17595.1| Pdcd11 protein [Danio rerio]
          Length = 1431

 Score =  330 bits (845), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 356/1449 (24%), Positives = 669/1449 (46%), Gaps = 152/1449 (10%)

Query: 54   FPRGGGHSLTQRER--DEIHAEVDAEFEA-VERGLHKKNKKKKKKTERKANETVDDLGSL 110
            FPRGG    T+R++  D I  EVD  F+   +    KK   K+ +  +   + VD+    
Sbjct: 5    FPRGG----TERKKPTDLIPHEVDNLFDTPAKVVKKKKKSVKQDEAPKSKKQKVDE---- 56

Query: 111  FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
              + I          + L++++ G  + G V EV++ ++V+ LP GL G   +    DA 
Sbjct: 57   --ENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAY 114

Query: 168  DPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
              IL+++++ ++  + ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K
Sbjct: 115  TNILNDKLDTDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNK 172

Query: 224  GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
             L+   ++  M L+  V+S+EDHGY++  G+     FLP+   + +S  D+  G  +  +
Sbjct: 173  ALNSVALKPAMTLSGCVESVEDHGYLVDIGIGGTKAFLPKK--STSSKQDLYVGQYVLVL 230

Query: 284  VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
            +  +  + +VV LS +P  + K   +  +G ++D L+PG+++   V+ +  +G++++FL+
Sbjct: 231  IEDVKDSGRVVRLSQNPQALVKACAETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLS 290

Query: 344  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 403
             FTG VD  HL     +T     Y++ +++ ARIL+V P++R VGL+L  +LL    PP 
Sbjct: 291  SFTGVVDFLHLDEDKEST-----YSKGQEILARILYVQPSTRQVGLSLRSHLL----PPG 341

Query: 404  HV--------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
                      +VG++    ++  +    G L+ +      + A+V   ++ +E   +L+ 
Sbjct: 342  GAVLDLHFSERVGEVVQGCQMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDT 397

Query: 456  KYKEGSCVRV-RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
             +       + RI+ +  +E +    L+ S+ E   F+  D+K G +V+G V  +   G 
Sbjct: 398  NHLMSQTQHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGV 457

Query: 515  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 572
             V+    ++ + P  H+++  +  P KKF  G ++  RVL V++++  + +T KK LV+S
Sbjct: 458  YVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSVEAQKKLLILTRKKALVES 517

Query: 573  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
             L I  SY++A    I+HG++  I++ GC VRFY  V+G  P  EL  +    P  ++ V
Sbjct: 518  TLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFV 577

Query: 633  GQVVKCRIMSSIPASRRINLSFM-MKPTRVSEDDLVKLGSLVSGVVDVVTP----NAVVV 687
            GQVVK +++      + + LSF  +    V E+ + K   +V  +VD        N + V
Sbjct: 578  GQVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEV 637

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLI 746
             +I +   +  +PT HL+DH+ +   +   ++ G     L+ L N +   ++L+ K  L 
Sbjct: 638  SIIPEEV-QAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLK 696

Query: 747  NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
               +   +P + S +     + G+V NI+  G F+ F   + G AP +   D    + S 
Sbjct: 697  AYIEDGAVPKNFSELQVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSG 756

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL-LEEK--IAMLQSSKH 861
             + + Q+V + + +++ E     +SLK S  S ++  F       L+E+  I+ +++ + 
Sbjct: 757  IFDIDQTVVAKVTNLDEEKQGFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRG 816

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
            +   L  +    +G  ++  V ++ + G V+++ ++ S V    + +   G  +  G  +
Sbjct: 817  DSDVLWKLSALTVGDQMKMIVGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKL 876

Query: 921  QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEI 980
             A IL +   +  V +SL+                +   +K E  KD        A V+ 
Sbjct: 877  NAVILHIDFVKSQVHVSLR---------------PKLNIKKEELEKD----ARFTAKVQF 917

Query: 981  VKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL 1040
              +++ V+SL   +    + +    N+  F  K+F  G  +   V        AG  L  
Sbjct: 918  ADKDFAVVSLATTSDLTFFPTRPHLNS-IFDSKKFSVGSCLDVKVDDPNCEDLAGFPL-- 974

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
               IS   +++     K +   +G L++  + ++K L + +    G  GR+H++++  + 
Sbjct: 975  ---ISYQSSNAKHEQHKPNEERLGELMKVTVKKLKALCVLVNLPSGNTGRVHVSQIL-EF 1030

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKS----------NKPDMKKSFLWELSIKPSMLTVSEI 1150
             ++     S  K+G  + AR+I             + PD   S + ELS   S L VS++
Sbjct: 1031 PDIGSCPTSVLKVGMEMEARVIGGRAVRAHNFLAISHPDYNIS-IPELSFLESKLKVSDM 1089

Query: 1151 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF----ILDSAYEPSELQEF 1206
             +KL         G  +  +  K   +  LL +  H+K  +     +L    +    +  
Sbjct: 1090 VNKLE----KYKPGDDIICFPSKYIKKEQLLEV--HVKPDIMGAVPLLAMCNKLGLSKHP 1143

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            QR F  G+A++  V+S++ +K        P Q  +S          M T           
Sbjct: 1144 QRLFKPGQALSAKVVSVDPKK--------PIQFSLSLTGTHKLEPGMNTL--------AM 1187

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1326
            + KI     GL++ +     G  H T+L +         Y E    PL  Y EGQ ++C 
Sbjct: 1188 VQKIQPH-KGLMLALPYENTGLAHLTDLSD--------SYTE---KPLESYKEGQIIRCH 1235

Query: 1327 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1386
            V+E     +      +SLR S     + +  D+  D +     ++ I D+     ++GYV
Sbjct: 1236 VIE-----QKIKEFNVSLRPS---RLNKDKHDIVEDPE-----IQSIADIKEGQSIRGYV 1282

Query: 1387 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRV 1443
             +V  +G F+ LSR +  +VL  N +  Y+  P+   K      LVA +VLSV+  +  V
Sbjct: 1283 SSVNDQGIFLRLSRTITGRVLFQNATKYYMNDPKVLIKHVGQNALVAAKVLSVDSENLHV 1342

Query: 1444 EVTLKTSDS 1452
             ++L + D+
Sbjct: 1343 NLSLLSKDT 1351



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 195/482 (40%), Gaps = 77/482 (15%)

Query: 1018 GQSVIATVMALPSSSTAGRL----LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
            GQ V+  +  +  S    RL      L+KA +ET     K+     +   G L+   +  
Sbjct: 224  GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAET-----KQGWTLDNLLPGLLIHGCVKR 278

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            + P  L + F   F G +    +++DK        S +  GQ + ARI+    +P  ++ 
Sbjct: 279  VTPHGLIVTFLSSFTGVVDFLHLDEDKE-------STYSKGQEILARILYV--QPSTRQV 329

Query: 1134 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
                LS++  +L        L F E    +G+ V G          + ++  +  A + +
Sbjct: 330  ---GLSLRSHLLPPGGAVLDLHFSE---RVGEVVQG--------CQMTSLHHYSGALMKM 375

Query: 1194 LDSA---YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1250
            LD +      + L+E +         T H++S  + + +LR++     + I   T+  S+
Sbjct: 376  LDGSRAFVHRNLLKEPKEELD-----TNHLMS--QTQHILRIINYSPIEQIYQATLRWSS 428

Query: 1251 DNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
                 F    I  G IV G ++ +     G+ V+IG H+ G +    L ++ + +P    
Sbjct: 429  IETPFFSCQDIKVGQIVEGTVTDLQKH--GVYVRIGEHIRGMIPRIHLADVTLKNP---- 482

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
             E +F P      G  VKC+VL +    +      L+ + +L              V++ 
Sbjct: 483  -EKKFYP------GLKVKCRVLSVEAQKKLLI---LTRKKAL--------------VEST 518

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
                +   D  P  I  G+V  +   GC +     +   V +  L+   V +PE+ F +G
Sbjct: 519  LPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVG 578

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            ++V  +VL  +   K + ++ K+       + +I    +  VG +V  ++ R    GL +
Sbjct: 579  QVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKF-DFIVGKMVDARVCRKVLNGLEV 637

Query: 1487 TI 1488
            +I
Sbjct: 638  SI 639


>gi|328767961|gb|EGF78009.1| hypothetical protein BATDEDRAFT_13567 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1670

 Score =  329 bits (844), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 373/1445 (25%), Positives = 613/1445 (42%), Gaps = 213/1445 (14%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            FPRGG       E  +I  +V  +      GL  + K  KK  +R  +   D   SL   
Sbjct: 9    FPRGGASDFNPLEYRDISDKVKEDVLFGVYGLTSEAKFNKKSKKRIVDNDFDSKSSLPKK 68

Query: 114  GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL-- 171
              +         ++ K +  GM L GVV ++N  ++V+ LP  L G     +  D I   
Sbjct: 69   SKTDFTALTVPILSYKKLDVGMCLLGVVKDINSLEMVVSLPNQLTGFVSLTEISDYISKQ 128

Query: 172  -------DNEIEANEDNL-------LPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWL 214
                   DNE E  + N        LP++   F +GQ V C ++  D   K    ++I L
Sbjct: 129  VEAAVDSDNEDEDTDMNSSAKDELDLPSLESYFQIGQSVVCKIISADQTSK---NKRIDL 185

Query: 215  SLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV 274
            SL+   + +G+    +  GMVL   V S EDHGYIL  G+   +GFL      E++   +
Sbjct: 186  SLKPEAVNEGIEKTNIVSGMVLPMCVTSKEDHGYILSLGIKGVSGFLKN----EHASAYL 241

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSIL 333
                LL        +T  +V L+ +   +      DL  ++ +  + PG +V+  +Q +L
Sbjct: 242  SSKNLL-------GKTFCLVSLNLEYTKIISLTFFDLFYMTELSHIRPGSLVTATIQDVL 294

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPT--TNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
            ENG+ L    +F+ T+D FHL N   +   + KN + + +KV +R+L+++   + +GLTL
Sbjct: 295  ENGLALHIFKFFSATIDWFHLGNGHISDKNDIKNQFKKGQKVASRVLYLNTAEKKIGLTL 354

Query: 392  NPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
             P L+  ++P     ++G + +   V+RVD   GLL+  P   +    YV +S +A++ +
Sbjct: 355  IPELILQKSPNFKSFEIGTVSENITVLRVDPLFGLLVQYPGDRL---GYVHMSRIADDHI 411

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
             K++K ++ G+  R RI+   +   L                  D+K G+ VKG++  + 
Sbjct: 412  TKIDKAFRTGTTHRGRIVDHDYCNNLLLIAFAPKIVNQPFLRLVDIKAGIKVKGQIRRIT 471

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
              G +V     +   CP  H S+ +I +P K FK GA + F VL V S  K++ +THKK+
Sbjct: 472  PSGVVVSVTDSINGFCPSNHFSDVKIARPEKLFKEGATVAFHVLSVNSADKQLILTHKKS 531

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            L++SKL  ++SY EA    IT G IT ++  GC V FYN V    P  EL       P  
Sbjct: 532  LMESKLPTITSYTEAQPGQITMGIITSVKNFGCIVSFYNNVHAIVPIVELSETRMDTPQD 591

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM-----KPTRVSEDDLVKLGSLVSGVVDVVTPN 683
             + +GQ +KCR++S    + ++  SF +     K   VS    +++G +  G+V   + +
Sbjct: 592  HFKIGQAIKCRVVSVDALNEKMCASFKLAALGNKLDSVSGTSTIQVGQIYDGIVVTKSKD 651

Query: 684  AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAK 742
             V+  V        +I   HL+D+   A  +   +  G +   LL ++ ++    L++ K
Sbjct: 652  TVISRV--NDTDLVSISKSHLSDYPTIAQSLYDSLNTGSKITGLLAINIDKYGKPLITRK 709

Query: 743  YSLINSAQQLPS--DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
            +SLI   QQ      AS +  + V  G+V NI    CFV F G + G        D   +
Sbjct: 710  HSLIFQVQQDNGVRKASDMINDQVCFGFVRNIYGKLCFVEFTGGVVGAVSLQNISDNFVS 769

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
             +S+   +GQSV                + +    ++T  +F Q+  L     AML  + 
Sbjct: 770  SVSEHLQIGQSVT---------------AYQVPAWTATQVAFTQQRIL-----AMLPKAT 809

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
                    V+  +   V+E  V            + H      I    L   TV+S    
Sbjct: 810  K-------VKDMVQNRVLENPV------------DPHLSSLQSIKPDMLIKCTVKS---F 847

Query: 921  QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI-VE 979
                ++V  A+ L      T   D F +    +Q         AS  +G       I V 
Sbjct: 848  DDTYINVCIADNLDGRIQATEIFDSFDQITDPKQPM-------ASFQIGQSLQAKVIEVH 900

Query: 980  IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN---GQSVIATVMALPSSSTAGR 1036
            I K ++ + +                N +K P+K +++     S IAT  AL        
Sbjct: 901  IFKPHFHMTT----------------NDKKSPKKVWIDLTVRPSFIATENAL-------- 936

Query: 1037 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
                        T++S+   K  + ++GS     I  I    LR+    G  G +   ++
Sbjct: 937  ------------TTASQIRPKLKTLEIGSEHIGCIQHIGSRTLRILIQGGLLGDVFNMDI 984

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL---SIKPSMLTVSEIGSK 1153
            + D  +VV N  S+F +GQ +   +I K  +   KK+F   L   S KP  +        
Sbjct: 985  SKD-VDVVNNASSHFAVGQLIKCFVIFKDTQ---KKTFNLSLVGASQKPVDM-------- 1032

Query: 1154 LLFEECDVSIGQRVTGYVYKVDNEWAL-LTISRHLKAQLFILDSAYE----PSELQEFQR 1208
                    S+GQ+V GYV K+D    + + I  H+ A++ I D A E    P+++     
Sbjct: 1033 -------FSVGQKVVGYVAKIDPLKGINIRIGSHIIARVHITDLADEFNESPTDI----- 1080

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLR--PFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
             + I + V   V+ I+ E  L+   LR   F+          S+        +G IV G 
Sbjct: 1081 -YTIRQLVQAVVVRIDTENNLIHCSLRKSAFKPDTKFPIFPFSS------FQKGSIVQGY 1133

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1326
            I  I     G  V +   +YGRV   EL +  V D  S      F P      G  VK +
Sbjct: 1134 IQSI--SEKGCFVGLTNDIYGRVKMCELSDSFVVDWKSA-----FKP------GMLVKGR 1180

Query: 1327 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1386
            ++ I+   +    +ELS + SL              V     +L K  D+      +G +
Sbjct: 1181 IISINTNSK---QIELSFKKSL--------------VTNDAGNLLKFSDIKVGQKSEGVI 1223

Query: 1387 KNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
            + +   G FI+L + +L     +  ++D  V++ E  + IG  V   VL   P  +++ +
Sbjct: 1224 RRIEDYGLFIVLKNSELCGLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQQISL 1283

Query: 1446 TLKTS 1450
            ++K S
Sbjct: 1284 SIKPS 1288



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 239/1081 (22%), Positives = 430/1081 (39%), Gaps = 166/1081 (15%)

Query: 478  TGILKASAFEGLVFTH-SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
            T I+  + F+    T  S ++PG +V   +  V   G  +       A     H+    I
Sbjct: 261  TKIISLTFFDLFYMTELSHIRPGSLVTATIQDVLENGLALHIFKFFSATIDWFHLGNGHI 320

Query: 537  VKPG---KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
                    +FK G ++  RVL + +  K+I +T    L+  K     S+   T  +  + 
Sbjct: 321  SDKNDIKNQFKKGQKVASRVLYLNTAEKKIGLTLIPELILQKSPNFKSFEIGT--VSENI 378

Query: 592  WITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
             + +++   G  V++     G+   S +  D   +    +  G   + RI+     +  +
Sbjct: 379  TVLRVDPLFGLLVQYPGDRLGYVHMSRIADDHITKIDKAFRTGTTHRGRIVDHDYCNNLL 438

Query: 651  NLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
             ++F   P  V++  L    +K G  V G +  +TP+ VVV V       G  P+ H +D
Sbjct: 439  LIAF--APKIVNQPFLRLVDIKAGIKVKGQIRRITPSGVVVSVTDS--INGFCPSNHFSD 494

Query: 707  HLEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
                      + +P   F +       +L +++    L+L+ K SL+ S  +LP+  S+ 
Sbjct: 495  --------VKIARPEKLFKEGATVAFHVLSVNSADKQLILTHKKSLMES--KLPTITSYT 544

Query: 760  --HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
               P  +  G + ++   GC V F   +    P  +  + +       + +GQ+++  ++
Sbjct: 545  EAQPGQITMGIITSVKNFGCIVSFYNNVHAIVPIVELSETRMDTPQDHFKIGQAIKCRVV 604

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG---FII 874
             V++        L +  C    ASF         K+A L      G++L  V G     +
Sbjct: 605  SVDA--------LNEKMC----ASF---------KLAAL------GNKLDSVSGTSTIQV 637

Query: 875  GSVIEG-KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 933
            G + +G  V +S D   V+S    +D+      H       +  ++ Q+    +    ++
Sbjct: 638  GQIYDGIVVTKSKD--TVISRVNDTDLVSISKSH-----LSDYPTIAQSLYDSLNTGSKI 690

Query: 934  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVL 988
                L  + ID++ +    R   K     +  +D GV +  + I +      V+  Y  L
Sbjct: 691  T--GLLAINIDKYGKPLITR---KHSLIFQVQQDNGVRKASDMINDQVCFGFVRNIYGKL 745

Query: 989  SLPEYNH----SIGYASVSDYNTQKFPQKQFLNGQSVIA----TVMALPSSSTAGRLLLL 1040
               E+      ++   ++SD N      +    GQSV A       A   + T  R+L +
Sbjct: 746  CFVEFTGGVVGAVSLQNISD-NFVSSVSEHLQIGQSVTAYQVPAWTATQVAFTQQRILAM 804

Query: 1041 LKAISETETSSSKRAKKK---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 1091
            L   ++ +     R  +           S     L++  +       + +       GRI
Sbjct: 805  LPKATKVKDMVQNRVLENPVDPHLSSLQSIKPDMLIKCTVKSFDDTYINVCIADNLDGRI 864

Query: 1092 HITEVNDDKSNVVE--NLFSNFKIGQTVTARII----------AKSNKPDMKKSFLWELS 1139
              TE+ D    + +     ++F+IGQ++ A++I            +N     K    +L+
Sbjct: 865  QATEIFDSFDQITDPKQPMASFQIGQSLQAKVIEVHIFKPHFHMTTNDKKSPKKVWIDLT 924

Query: 1140 IKPSML-------TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            ++PS +       T S+I  KL   E    IG    G +  + +    + I   L   +F
Sbjct: 925  VRPSFIATENALTTASQIRPKLKTLE----IGSEHIGCIQHIGSRTLRILIQGGLLGDVF 980

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +D + +   +      F +G+ +   V+  + +KK   L L     G S K VD+    
Sbjct: 981  NMDISKDVDVVNNASSHFAVGQLIKCFVIFKDTQKKTFNLSLV----GASQKPVDM---- 1032

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1312
                   G  V G ++KI   + G+ ++IG H+  RVH T+L            DE    
Sbjct: 1033 ----FSVGQKVVGYVAKI-DPLKGINIRIGSHIIARVHITDLA-----------DEFNES 1076

Query: 1313 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1372
            P   Y   Q V+  V+ I  T     H   SLR S              D   P   +  
Sbjct: 1077 PTDIYTIRQLVQAVVVRID-TENNLIHC--SLRKSA----------FKPDTKFP---IFP 1120

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
                    IVQGY+++++ KGCF+ L+  +  +V +  LSD +V   +  F  G LV GR
Sbjct: 1121 FSSFQKGSIVQGYIQSISEKGCFVGLTNDIYGRVKMCELSDSFVVDWKSAFKPGMLVKGR 1180

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            ++S+   SK++E++ K S   T     +   S++ VG    G I+R+E YGLFI ++N+ 
Sbjct: 1181 IISINTNSKQIELSFKKS-LVTNDAGNLLKFSDIKVGQKSEGVIRRIEDYGLFIVLKNSE 1239

Query: 1493 L 1493
            L
Sbjct: 1240 L 1240



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG----LVFTH 493
            A V I+D+A+E        Y     V+  ++       L    L+ SAF+      +F  
Sbjct: 1062 ARVHITDLADEFNESPTDIYTIRQLVQAVVVRIDTENNLIHCSLRKSAFKPDTKFPIFPF 1121

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S  + G +V+G + ++   G  V     +     +  +S+  +V     FK G  +  R+
Sbjct: 1122 SSFQKGSIVQGYIQSISEKGCFVGLTNDIYGRVKMCELSDSFVVDWKSAFKPGMLVKGRI 1181

Query: 554  LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG-VQ 610
            + +   SK+I ++ KK+LV +    L  +++      + G I +IE +G F+   N  + 
Sbjct: 1182 ISINTNSKQIELSFKKSLVTNDAGNLLKFSDIKVGQKSEGVIRRIEDYGLFIVLKNSELC 1241

Query: 611  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            G     E+   P     S+Y +G  V   ++ + P  ++I+LS  +KP+R ++DD+++
Sbjct: 1242 GLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQQISLS--IKPSRFNDDDVLE 1297



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
            P  I  G + +V + GC +     + A V +  LS+  +++P+  F IG+ +  RV+SV+
Sbjct: 548  PGQITMGIITSVKNFGCIVSFYNNVHAIVPIVELSETRMDTPQDHFKIGQAIKCRVVSVD 607

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
             L++++  + K +       S ++  S + VG I  G +       +   + +T+LV
Sbjct: 608  ALNEKMCASFKLAALGNKLDS-VSGTSTIQVGQIYDGIVVTKSKDTVISRVNDTDLV 663


>gi|154800462|ref|NP_001082837.2| protein RRP5 homolog [Danio rerio]
          Length = 1816

 Score =  328 bits (842), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 356/1449 (24%), Positives = 669/1449 (46%), Gaps = 152/1449 (10%)

Query: 54   FPRGGGHSLTQRER--DEIHAEVDAEFEA-VERGLHKKNKKKKKKTERKANETVDDLGSL 110
            FPRGG    T+R++  D I  EVD  F+   +    KK   K+ +  +   + VD+    
Sbjct: 8    FPRGG----TERKKPTDLIPHEVDNLFDTPAKVVKKKKKSVKQDEAPKSKKQKVDE---- 59

Query: 111  FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
              + I          + L++++ G  + G V EV++ ++V+ LP GL G   +    DA 
Sbjct: 60   --ENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAY 117

Query: 168  DPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
              IL+++++ ++  + ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K
Sbjct: 118  TNILNDKLDTDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNK 175

Query: 224  GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
             L+   ++  M L+  V+S+EDHGY++  G+     FLP+ + +  S  D+  G  +  +
Sbjct: 176  ALNSVALKPAMTLSGCVESVEDHGYLVDIGIGGTKAFLPKKSTS--SKQDLYVGQYVLVL 233

Query: 284  VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
            +  +  + +VV LS +P  + K   +  +G ++D L+PG+++   V+ +  +G++++FL+
Sbjct: 234  IEDVKDSGRVVRLSQNPQALVKACAETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLS 293

Query: 344  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 403
             FTG VD  HL     +T     Y++ +++ ARIL+V P++R VGL+L  +LL    PP 
Sbjct: 294  SFTGVVDFLHLDEDKEST-----YSKGQEILARILYVQPSTRQVGLSLRSHLL----PPG 344

Query: 404  HV--------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
                      +VG++    ++  +    G L+ +      + A+V   ++ +E   +L+ 
Sbjct: 345  GAVLDLHFSERVGEVVQGCQMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDT 400

Query: 456  KYKEGSCVRV-RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
             +       + RI+ +  +E +    L+ S+ E   F+  D+K G +V+G V  +   G 
Sbjct: 401  NHLMSQTQHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGV 460

Query: 515  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 572
             V+    ++ + P  H+++  +  P KKF  G ++  RVL V++++  + +T KK LV+S
Sbjct: 461  YVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSVEAQKKLLILTRKKALVES 520

Query: 573  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
             L I  SY++A    I+HG++  I++ GC VRFY  V+G  P  EL  +    P  ++ V
Sbjct: 521  TLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFV 580

Query: 633  GQVVKCRIMSSIPASRRINLSFM-MKPTRVSEDDLVKLGSLVSGVVDVVTP----NAVVV 687
            GQVVK +++      + + LSF  +    V E+ + K   +V  +VD        N + V
Sbjct: 581  GQVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEV 640

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLI 746
             +I +   +  +PT HL+DH+ +   +   ++ G     L+ L N +   ++L+ K  L 
Sbjct: 641  SIIPEEV-QAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLK 699

Query: 747  NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
               +   +P + S +     + G+V NI+  G F+ F   + G AP +   D    + S 
Sbjct: 700  AYIEDGAVPKNFSELQVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSG 759

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL-LEEK--IAMLQSSKH 861
             + + Q+V + + +++ E     +SLK S  S ++  F       L+E+  I+ +++ + 
Sbjct: 760  IFDIDQTVVAKVTNLDEEKQGFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRG 819

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
            +   L  +    +G  ++  V ++ + G V+++ ++ S V    + +   G  +  G  +
Sbjct: 820  DSDVLWKLSALTVGDQMKMIVGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKL 879

Query: 921  QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEI 980
             A IL +   +  V +SL+                +   +K E  KD        A V+ 
Sbjct: 880  NAVILHIDFVKSQVHVSLR---------------PKLNIKKEELEKD----ARFTAKVQF 920

Query: 981  VKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL 1040
              +++ V+SL   +    + +    N+  F  K+F  G  +   V        AG  L  
Sbjct: 921  ADKDFAVVSLATTSDLTFFPTRPHLNS-IFDSKKFSVGSCLDVKVDDPNCEDLAGFPL-- 977

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
               IS   +++     K +   +G L++  + ++K L + +    G  GR+H++++  + 
Sbjct: 978  ---ISYQSSNAKHEQHKPNEERLGELMKVTVKKLKALCVLVNLPSGNTGRVHVSQIL-EF 1033

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKS----------NKPDMKKSFLWELSIKPSMLTVSEI 1150
             ++     S  K+G  + AR+I             + PD   S + ELS   S L VS++
Sbjct: 1034 PDIGSCPTSVLKVGMEMEARVIGGRAVRAHNFLAISHPDYNIS-IPELSFLESKLKVSDM 1092

Query: 1151 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF----ILDSAYEPSELQEF 1206
             +KL         G  +  +  K   +  LL +  H+K  +     +L    +    +  
Sbjct: 1093 VNKLE----KYKPGDDIICFPSKYIKKEQLLEV--HVKPDIMGAVPLLAMCNKLGLSKHP 1146

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            QR F  G+A++  V+S++ +K        P Q  +S          M T           
Sbjct: 1147 QRLFKPGQALSAKVVSVDPKK--------PIQFSLSLTGTHKLEPGMNTL--------AM 1190

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1326
            + KI     GL++ +     G  H T+L +         Y E    PL  Y EGQ ++C 
Sbjct: 1191 VQKIQPH-KGLMLALPYENTGLAHLTDLSD--------SYTE---KPLESYKEGQIIRCH 1238

Query: 1327 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1386
            V+E     +      +SLR S     + +  D+  D +     ++ I D+     ++GYV
Sbjct: 1239 VIE-----QKIKEFNVSLRPS---RLNKDKHDIVEDPE-----IQSIADIKEGQSIRGYV 1285

Query: 1387 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRV 1443
             +V  +G F+ LSR +  +VL  N +  Y+  P+   K      LVA +VLSV+  +  V
Sbjct: 1286 SSVNDQGIFLRLSRTITGRVLFQNATKYYMNDPKVLIKHVGQNALVAAKVLSVDSENLHV 1345

Query: 1444 EVTLKTSDS 1452
             ++L + D+
Sbjct: 1346 NLSLLSKDT 1354



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 104/488 (21%), Positives = 194/488 (39%), Gaps = 89/488 (18%)

Query: 1018 GQSVIATVMALPSSSTAGRL----LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
            GQ V+  +  +  S    RL      L+KA +ET     K+     +   G L+   +  
Sbjct: 227  GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAET-----KQGWTLDNLLPGLLIHGCVKR 281

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            + P  L + F   F G +    +++DK        S +  GQ + ARI+    +P  ++ 
Sbjct: 282  VTPHGLIVTFLSSFTGVVDFLHLDEDKE-------STYSKGQEILARILYV--QPSTRQV 332

Query: 1134 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
                LS++  +L        L F E    +G+ V G          + ++  +  A + +
Sbjct: 333  ---GLSLRSHLLPPGGAVLDLHFSE---RVGEVVQG--------CQMTSLHHYSGALMKM 378

Query: 1194 LDSAY---------EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
            LD +          EP E           +  T H++S  + + +LR++     + I   
Sbjct: 379  LDGSRAFVHRNLLKEPKE-----------ELDTNHLMS--QTQHILRIINYSPIEQIYQA 425

Query: 1245 TVDISNDNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            T+  S+     F    I  G IV G ++ +     G+ V+IG H+ G +    L ++ + 
Sbjct: 426  TLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKH--GVYVRIGEHIRGMIPRIHLADVTLK 483

Query: 1301 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
            +P     E +F P      G  VKC+VL +    +      L+ + +L            
Sbjct: 484  NP-----EKKFYP------GLKVKCRVLSVEAQKKLLI---LTRKKAL------------ 517

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
              V++     +   D  P  I  G+V  +   GC +     +   V +  L+   V +PE
Sbjct: 518  --VESTLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPE 575

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1480
            + F +G++V  +VL  +   K + ++ K+       + +I    +  VG +V  ++ R  
Sbjct: 576  ELFFVGQVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKF-DFIVGKMVDARVCRKV 634

Query: 1481 SYGLFITI 1488
              GL ++I
Sbjct: 635  LNGLEVSI 642


>gi|194374585|dbj|BAG57188.1| unnamed protein product [Homo sapiens]
          Length = 771

 Score =  324 bits (831), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 237/781 (30%), Positives = 398/781 (50%), Gaps = 55/781 (7%)

Query: 54  FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
           FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8   FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                 S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64  ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                 NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
            + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176 NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236 GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
           + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296 LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397 HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351 QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
            + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408 PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
            +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468 MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
           SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528 SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632 VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
            GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588 TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
            + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648 KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLRR 706

Query: 742 KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
           K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++      R
Sbjct: 707 KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMCSSCR 766

Query: 800 A 800
           +
Sbjct: 767 S 767



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 148/644 (22%), Positives = 258/644 (40%), Gaps = 111/644 (17%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVK-PGKKFKVGA 547
            V +   +KPGM++ G V +++  G +V     G +A  PL    E+   K  G K KVG 
Sbjct: 178  VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQ 237

Query: 548  ELVFRVLGVKSK----RITVTHKKTLVKSKLAILSSYAEATDR-----------LITHGW 592
             L   V  VK       ++V H +           S A AT++           L+    
Sbjct: 238  YLNCIVEKVKGNGGVVSLSVGHSEV----------STAIATEQQSWNLNNLLPGLVVKAQ 287

Query: 593  ITKIEKHGC---FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            + K+   G    F+ F+ GV  F     + LDP  + +  Y   Q V+  I+   P +R 
Sbjct: 288  VQKVTPFGLTLNFLTFFTGVVDF-----MHLDP--KKAGTYFSNQAVRACILCVHPRTRV 340

Query: 650  INLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            ++LS     ++P R     L +L     G        AV+  V  +G+ K    T  L D
Sbjct: 341  VHLSLRPIFLQPGR----PLTRLSCQNLG--------AVLDDVPVQGFFKKAGATFRLKD 388

Query: 707  ------HLEHATVMKSVI-----KPGYEFDQLLVLDNESSNL-LLSAKYSLINSAQQLPS 754
                   L H +  K+V      KPG      ++  ++   L LLS + S+I  AQ L  
Sbjct: 389  GVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIE-AQYL-- 445

Query: 755  DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
                I P +VV G V  I   G  V+   ++ G  P     D    +  K Y++G  V+ 
Sbjct: 446  RYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKC 505

Query: 815  NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874
             +L  + E  ++ ++LK++              L+E K+ ++         L+   GFII
Sbjct: 506  RVLLCDPEAKKLMMTLKKT--------------LIESKLPVITCYADAKPGLQ-THGFII 550

Query: 875  GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDV 927
                        D+G +V F  +++V G +  H+L+   +        +G V++  +L+ 
Sbjct: 551  ---------RVKDYGCIVKF--YNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA-IVEIVKENYL 986
              ++  + LS K         ++   + +     ++  K + + Q V+  ++E  K+   
Sbjct: 600  EPSKERMLLSFKL-------SSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLE 652

Query: 987  VLSLPEYNHS-IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045
            V  LP    + +  + +SD+         +L    ++  V+ L  S + GR+LL  K   
Sbjct: 653  VAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCL--SQSEGRVLLRRKPAL 710

Query: 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
             +     +  K  S    G L+   +  IK   + ++F  G  G
Sbjct: 711  VSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSG 754



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 56/286 (19%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1327
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1328 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1387
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1388 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1448 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN 563



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 109/547 (19%), Positives = 206/547 (37%), Gaps = 117/547 (21%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
             V Q +N IVE VK N  V+SL     S+G++ VS                         
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVS------------------------- 263

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
                              T  ++ +++   ++   G +V+A++ ++ P  L L F   F 
Sbjct: 264  ------------------TAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFT 305

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP----SM 1144
            G +    ++  K+      FSN    Q V A I+    +  +    L  + ++P    + 
Sbjct: 306  GVVDFMHLDPKKAG---TYFSN----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTR 358

Query: 1145 LTVSEIGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTISRHLKAQLFILDSAYEPSEL 1203
            L+   +G+  + ++  V    +  G  +++ D   A   +S    ++      A++P   
Sbjct: 359  LSCQNLGA--VLDDVPVQGFFKKAGATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPG-- 414

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
                           H   I    ++  L L   +  I +      +D     I  G +V
Sbjct: 415  -------------NTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHD-----IEPGAVV 456

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G +  I S   G++V++G  + G V    L +I + +P   Y  G        DE   V
Sbjct: 457  KGTVLTIKSY--GMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIG--------DE---V 503

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            KC+VL      +    + ++L+ +L              +++    +    D  P +   
Sbjct: 504  KCRVLLCDPEAK---KLMMTLKKTL--------------IESKLPVITCYADAKPGLQTH 546

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G++  V   GC +     +   V    LS  Y+  PE+ F  G++V   VL+ EP  +R+
Sbjct: 547  GFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERM 606

Query: 1444 EVTLKTS 1450
             ++ K S
Sbjct: 607  LLSFKLS 613


>gi|156378172|ref|XP_001631018.1| predicted protein [Nematostella vectensis]
 gi|156218050|gb|EDO38955.1| predicted protein [Nematostella vectensis]
          Length = 1771

 Score =  324 bits (831), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 210/642 (32%), Positives = 344/642 (53%), Gaps = 37/642 (5%)

Query: 29  NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEF----EAVERG 84
           ++K++   A ++ ++ LP   D   FPRGG  +L+  E   I  E + +       V+  
Sbjct: 14  SAKRRSTSAGKSTEVILPSHIDEIDFPRGGASTLSPLEVRRIKQEAEKDLLFGTTPVQEI 73

Query: 85  LHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEV 144
             KK + K    ERK N +  DLG   G+ ++         ++ K +  GMKL G V EV
Sbjct: 74  KKKKKRSKSLPAERKDNNSDADLGKTSGNHVAS--------LSFKKLCEGMKLLGAVKEV 125

Query: 145 NEKDLVICLPGGLRGLARAADA----LDPILDNEIEANEDNLLPTI---FHVGQLVSCIV 197
            E +L+I LP GL G     D     +  +  +  E   ++ +P++   F V  LV C+V
Sbjct: 126 GEFELIISLPNGLSGFVHILDINEKLMSALAKSSTEERIEDSIPSLGDLFTVNSLVVCVV 185

Query: 198 LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
            +L   K   G RK+ LSLR   +  G++   +  G VL   V S+EDHGY+L FG+P  
Sbjct: 186 KELLSSKH--GHRKVKLSLRPEDVNAGVT--NIVPGFVLPGCVSSVEDHGYVLSFGIPGK 241

Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV-SKCVTKDLKGISI 316
           TGFL +    + +G  +  G  L  +V S D T +V+ +S D D + S  ++ D+K +  
Sbjct: 242 TGFLSK----KKTGRVLVEGQYLNTIVESAD-TGRVIRVSVDQDKIKSAMISSDMK-VRF 295

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL-QNTFPTTNWKNDYNQHKKVNA 375
             L+PGM+V+TRV     +GV++SFL  F G+V I HL +N     N +  Y +  K  A
Sbjct: 296 SSLLPGMLVNTRVSQCTSSGVIVSFLELFEGSVHILHLPENGGSGENLEKLYKKKSKHVA 355

Query: 376 RILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
           RIL+V+P ++ V L++   ++  + P      +GDI+D   + R D+GLGLL ++     
Sbjct: 356 RILYVNPKNKVVSLSMLDSIIQFKLPSFESCSIGDIFDNVTITRGDQGLGLLANVKD--- 412

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
               +V  S V+++++ KL KKYK G+  + R+LG   ++GL +   K S        + 
Sbjct: 413 GLNGFVHFSQVSDKQIEKLGKKYKAGTSHKCRVLGMNTIDGLLSLTTKKSIINKPFMRYE 472

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+KPG +V+G +I ++ FG +V     +K L    H+++  +  P KK   G  +  RVL
Sbjct: 473 DIKPGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVVKCRVL 532

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V    +R+ +THKKT+V S L +++ Y++A     +HG+IT + ++GC V FYN V+G 
Sbjct: 533 TVDPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVKGL 592

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            P+ +LG+    +P  ++++GQV+ C ++S  P  +++ LS 
Sbjct: 593 VPKDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSL 634



 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 263/1002 (26%), Positives = 450/1002 (44%), Gaps = 127/1002 (12%)

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTL 569
             G +     G+        +S+ +I K GKK+K G     RVLG+ +    +++T KK++
Sbjct: 404  LGLLANVKDGLNGFVHFSQVSDKQIEKLGKKYKAGTSHKCRVLGMNTIDGLLSLTTKKSI 463

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            +         Y +     I  G I  +EK G  V   + ++G      L       P   
Sbjct: 464  INKPFM---RYEDIKPGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKK 520

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV-------KLGSLVSGVVDVVTP 682
               G+VVKCR+++  P  RR++L+   K T VS    V       K G+   G +  V  
Sbjct: 521  LTEGKVVKCRVLTVDPGQRRLHLTH--KKTMVSSTLQVITQYSDAKPGTTSHGFITSVRE 578

Query: 683  NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF---------DQL---LVL 730
               +V        KG +P + L   ++ +   + V   G            DQ    L L
Sbjct: 579  YGCLVTFY--NNVKGLVPKDQLG--IQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSL 634

Query: 731  DNESSNL------LLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
               S+N       L +A  SL N+A+   + ++ S I P  V+ G+V  ++  G FV F 
Sbjct: 635  KANSANKSSTQVSLQTASTSLKNAAESKTMVTNFSDIKPGMVLPGFVKLLMGYGVFVEFA 694

Query: 783  GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS-------CC 835
              + G AP S   +   +D +  + +GQ++ + + +V++E  R  +SLKQS         
Sbjct: 695  PGILGLAPNSFIANHFVSDAASHFKIGQTLVAQVNEVDAERQRFLVSLKQSDLNPGSDWT 754

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
            S+T  + ++E  +L E+  +L        ++K +    +GS IEGKV +    G+ ++  
Sbjct: 755  SATAGALLEE--ILSERKHILDELASKTEDVKNLLSLPVGSCIEGKVSKVKKNGISLTLP 812

Query: 896  EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
            +   + GF+ H    G +   G V+Q  +LD+   + +V+L+L         +    RQ 
Sbjct: 813  D--GLKGFVFHQLAQGVSCLEGEVVQGCVLDLDVKKSVVELTL-------LPDVVKGRQN 863

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY-NTQKFPQKQ 1014
            QK K K+     +   Q V+ IV+++K  Y+V+ LP     IGYA    + N  +   K+
Sbjct: 864  QKNKPKQ-----MKPGQPVDFIVQLIKAEYMVVVLPCAAFKIGYAPAKMHLNDIRDVAKR 918

Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEI 1074
            F  GQ    +++   S             +SE + SS +  K       G++   E+  I
Sbjct: 919  FNVGQKYRGSILESSSHCIV---------VSECQNSSKENLKP------GTVTSVEVRSI 963

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK------P 1128
            KPL++ ++ G   HGR+H++   DD     E+ F  F++GQ + A+I+   +       P
Sbjct: 964  KPLQMNVQLG-QIHGRVHVSNAADDLIQG-ESPFKPFQMGQKIQAKILGFRDTKTHNFLP 1021

Query: 1129 DMKKSF---LWELSIKPSMLT---VSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWAL 1180
               ++F   + ELS+KPSM++    SE+   +  E+   D  IG  V  +V    +    
Sbjct: 1022 LTHRNFTRAVAELSLKPSMVSKTSASEVVGAVYDEKKIEDFKIGDEVQAFVKSTSDNCIW 1081

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            + I+  +  ++ +L ++ +   L+     F  G   T  VL ++K+ ++L L L    D 
Sbjct: 1082 MAINTLVSGRVELLHASNDVKVLRHLSSAFKPGNGHTCTVLDVDKDHEVLNLSLTVKPDS 1141

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
                   +S D          IV GR+++++    GL +Q+  H  G V  T++ +    
Sbjct: 1142 ------QLSRDQ---------IVPGRVTRVMP-TSGLFIQLPLHKSGLVALTDIADHFTE 1185

Query: 1301 DPLSGYDEGQF-----------DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
            +P  GY   Q            +P  GY   Q V+C +L    + +   H +LSLR S  
Sbjct: 1186 NPTDGYKVKQIVRWLQSQADRTNPTDGYKVKQIVRCCIL----SKKDNGHYDLSLRPSRT 1241

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
              ++T      +  D   + +  +  L    IV+GYV   T+ G F+ L R + A+V + 
Sbjct: 1242 TEATTQEEKDKSRTD---REIGSLAALDVGDIVRGYVSCATNIGVFVSLGRNIKARVQIK 1298

Query: 1410 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
            NLS  YV+  +  FP+GKLV G+VLS+ P + ++E++LK  D
Sbjct: 1299 NLSHFYVKEWKPLFPVGKLVTGKVLSINPTNGQIELSLKGRD 1340



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 245/1095 (22%), Positives = 433/1095 (39%), Gaps = 203/1095 (18%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAEL 549
            S + PGM+V  +V    S G IV F    +    + H+ E     E ++  K +K  ++ 
Sbjct: 296  SSLLPGMLVNTRVSQCTSSGVIVSFLELFEGSVHILHLPENGGSGENLE--KLYKKKSKH 353

Query: 550  VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFY 606
            V R+L V  K+K ++++   ++++ KL    S +     +  +  IT+ ++  G      
Sbjct: 354  VARILYVNPKNKVVSLSMLDSIIQFKLPSFESCS--IGDIFDNVTITRGDQGLGLLANVK 411

Query: 607  NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI--MSSIPA--SRRINLSFMMKPTRVS 662
            +G+ GF   S++      +    Y  G   KCR+  M++I    S     S + KP    
Sbjct: 412  DGLNGFVHFSQVSDKQIEKLGKKYKAGTSHKCRVLGMNTIDGLLSLTTKKSIINKPFMRY 471

Query: 663  EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVI 718
            ED  +K GS+V G +  +T     + V    + KG +   HLAD    H E       V+
Sbjct: 472  ED--IKPGSIVEGTI--ITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVV 527

Query: 719  KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            K      ++L +D     L L+ K ++++S  Q+ +  S   P +  HG++ ++ E GC 
Sbjct: 528  KC-----RVLTVDPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCL 582

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC--S 836
            V F   + G  P+ +    +  D    +Y+GQ +  +++  N +  ++ LSLK +    S
Sbjct: 583  VTFYNNVKGLVPKDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSLKANSANKS 642

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            ST  S       L+   A  ++   N S++K       G V+ G V     +GV V F  
Sbjct: 643  STQVSLQTASTSLKNA-AESKTMVTNFSDIK------PGMVLPGFVKLLMGYGVFVEFA- 694

Query: 897  HSDVYG-----FITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSLKTVFIDR---- 945
               + G     FI +H ++ A    + G  + A + +V    +   +SLK   ++     
Sbjct: 695  -PGILGLAPNSFIANHFVSDAASHFKIGQTLVAQVNEVDAERQRFLVSLKQSDLNPGSDW 753

Query: 946  --------FREANSNRQ--AQKKKRKREASKD---LGVHQTVNAIVEIVKENYLVLSLPE 992
                      E  S R+    +   K E  K+   L V   +   V  VK+N + L+LP+
Sbjct: 754  TSATAGALLEEILSERKHILDELASKTEDVKNLLSLPVGSCIEGKVSKVKKNGISLTLPD 813

Query: 993  YNHSIGYASVSDYNTQKFPQK-QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 1051
                     +  +   +  Q    L G+ V   V+ L    +   L LL   +   +   
Sbjct: 814  --------GLKGFVFHQLAQGVSCLEGEVVQGCVLDLDVKKSVVELTLLPDVVKGRQNQK 865

Query: 1052 SKRAKKKSSYDVGSLVQAEITEIKPLELRL-KFGIGFH-GRIHITEVNDDKSNVVENLFS 1109
            +K  + K    V  +VQ    E   + L    F IG+   ++H+ ++ D        +  
Sbjct: 866  NKPKQMKPGQPVDFIVQLIKAEYMVVVLPCAAFKIGYAPAKMHLNDIRD--------VAK 917

Query: 1110 NFKIGQTVTARIIAKSNK----PDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIG 1164
             F +GQ     I+  S+      + + S   + ++KP  +T  E+ S K L  + +V +G
Sbjct: 918  RFNVGQKYRGSILESSSHCIVVSECQNS--SKENLKPGTVTSVEVRSIKPL--QMNVQLG 973

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI- 1223
            Q + G V+ V N              L   +S ++P         F +G+ +   +L   
Sbjct: 974  Q-IHGRVH-VSNA----------ADDLIQGESPFKP---------FQMGQKIQAKILGFR 1012

Query: 1224 -NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS-------KILSGVG 1275
              K    L L  R F   +++ ++  S   M +     ++VG           KI   V 
Sbjct: 1013 DTKTHNFLPLTHRNFTRAVAELSLKPS---MVSKTSASEVVGAVYDEKKIEDFKIGDEVQ 1069

Query: 1276 GLV---------VQIGPHLYGRVHFTELKN-ICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
              V         + I   + GRV      N + V   LS      F P +G+       C
Sbjct: 1070 AFVKSTSDNCIWMAINTLVSGRVELLHASNDVKVLRHLS----SAFKPGNGH------TC 1119

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
             VL++ +      H  L+L      ++    S LS D   PG+                 
Sbjct: 1120 TVLDVDKD-----HEVLNL-----SLTVKPDSQLSRDQIVPGR----------------V 1153

Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV------AGRV------ 1433
             + + + G FI L       V L++++D + E+P   + + ++V      A R       
Sbjct: 1154 TRVMPTSGLFIQLPLHKSGLVALTDIADHFTENPTDGYKVKQIVRWLQSQADRTNPTDGY 1213

Query: 1434 --------------------LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
                                LS+ P S+  E T +    ++ +  EI +L+ L VGDIV 
Sbjct: 1214 KVKQIVRCCILSKKDNGHYDLSLRP-SRTTEATTQEEKDKSRTDREIGSLAALDVGDIVR 1272

Query: 1474 GQIKRVESYGLFITI 1488
            G +    + G+F+++
Sbjct: 1273 GYVSCATNIGVFVSL 1287



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 34/216 (15%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG-YDEGQFVKCKVLEISRTV 1334
            GL+  +   L G VHF++     VSD        Q + L   Y  G   KC+VL ++   
Sbjct: 405  GLLANVKDGLNGFVHFSQ-----VSDK-------QIEKLGKKYKAGTSHKCRVLGMN--- 449

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                        ++DG+ S     L+T      K   + ED+ P  IV+G +  +   G 
Sbjct: 450  ------------TIDGLLS-----LTTKKSIINKPFMRYEDIKPGSIVEGTIITLEKFGM 492

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
             + +S  +   V   +L+D  ++ PEK+   GK+V  RVL+V+P  +R+ +T K +   +
Sbjct: 493  LVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVVKCRVLTVDPGQRRLHLTHKKTMVSS 552

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              Q  I   S+   G    G I  V  YG  +T  N
Sbjct: 553  TLQV-ITQYSDAKPGTTSHGFITSVREYGCLVTFYN 587



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 115/527 (21%), Positives = 209/527 (39%), Gaps = 100/527 (18%)

Query: 473  LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
            L+  +T +  A+  + +V   SD+KPGMV+ G V  +  +G  V+F  G+  L P   ++
Sbjct: 648  LQTASTSLKNAAESKTMVTNFSDIKPGMVLPGFVKLLMGYGVFVEFAPGILGLAPNSFIA 707

Query: 533  EFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTHKKT-------------------LVK 571
               +      FK+G  LV +V  +  + +R  V+ K++                   ++ 
Sbjct: 708  NHFVSDAASHFKIGQTLVAQVNEVDAERQRFLVSLKQSDLNPGSDWTSATAGALLEEILS 767

Query: 572  SKLAILSSYAEATDRL----------ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
             +  IL   A  T+ +             G ++K++K+G  +   +G++GF    +L   
Sbjct: 768  ERKHILDELASKTEDVKNLLSLPVGSCIEGKVSKVKKNGISLTLPDGLKGFV-FHQLAQG 826

Query: 622  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVT 681
              C    +   G V+   +  S+     +      +  + ++   +K G  V  +V ++ 
Sbjct: 827  VSCLEGEVVQ-GCVLDLDVKKSVVELTLLPDVVKGRQNQKNKPKQMKPGQPVDFIVQLIK 885

Query: 682  PNAVVVYVIAKGYSKGTIPTE-HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
               +VV +    +  G  P + HL D       ++ V K      +  V      ++L S
Sbjct: 886  AEYMVVVLPCAAFKIGYAPAKMHLND-------IRDVAK------RFNVGQKYRGSILES 932

Query: 741  AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG--Q 798
            + + ++ S  Q  S   ++ P +V    V +I      V+ LG++ G    S A D   Q
Sbjct: 933  SSHCIVVSECQ-NSSKENLKPGTVTSVEVRSIKPLQMNVQ-LGQIHGRVHVSNAADDLIQ 990

Query: 799  RADLSKTYYVGQSVRSNILDV--------------NSETGRITLSLKQSCCSSTDASFMQ 844
                 K + +GQ +++ IL                N       LSLK S  S T AS + 
Sbjct: 991  GESPFKPFQMGQKIQAKILGFRDTKTHNFLPLTHRNFTRAVAELSLKPSMVSKTSASEVV 1050

Query: 845  EHFLLEEKI----------AMLQSSKHNGSELKWVEGFIIGSVIEGKV---HESNDFGVV 891
                 E+KI          A ++S+  N     W+    I +++ G+V   H SND  V+
Sbjct: 1051 GAVYDEKKIEDFKIGDEVQAFVKSTSDN---CIWMA---INTLVSGRVELLHASNDVKVL 1104

Query: 892  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938
                             L+ A  + G+     +LDV K   +++LSL
Sbjct: 1105 ---------------RHLSSA-FKPGNGHTCTVLDVDKDHEVLNLSL 1135


>gi|340381756|ref|XP_003389387.1| PREDICTED: protein RRP5 homolog [Amphimedon queenslandica]
          Length = 1804

 Score =  319 bits (818), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 381/1451 (26%), Positives = 634/1451 (43%), Gaps = 171/1451 (11%)

Query: 54   FPRGGGHSLTQRERDEI--HAEVDAEF----------EAVERGLHKKNKKKKKKTERKAN 101
            FPRGG   +T  ER +I   AE D  F          EA    L  +  K KKKTE K  
Sbjct: 48   FPRGGKELITPLERRKIIHQAEHDDIFGKKSDLLEKNEAAAMLLSDEGVKNKKKTEIK-- 105

Query: 102  ETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA 161
            E V ++          K+P   +++  KN+  G+ +   + EV +  L++ LP  + G  
Sbjct: 106  EPVKNI----------KVP---DRLYHKNLKEGLLILCAIKEVQQYRLLMSLPFNMTGSV 152

Query: 162  RAADALDPILD--------NEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIW 213
               D  DP+           E +A +   L  ++ VGQL+SC VL+++D +K++      
Sbjct: 153  NIGDVSDPLSSLINTGGEGEEFDAKKVPDLSKMYRVGQLLSCYVLKVNDSEKQV-----Q 207

Query: 214  LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
            LS+   L+   L+ + +   M+++  V SIEDHGYI+ FG+   T FL    L +NSG +
Sbjct: 208  LSINPKLINNQLTAKNLIPNMIVSGCVTSIEDHGYIIDFGVSDRTEFL----LNKNSGSE 263

Query: 274  VKPGLLLQGVVRSI---DRTRKVVYLSSDPDTV-SKCVTKDLKGISIDLLVPGMMVSTRV 329
                L +  VV ++     T + + LS  PD + S  +++    +++  ++PG +++  V
Sbjct: 264  ---SLYIGQVVSTLILPGPTARALPLSIAPDILYSSILSQSSSAVTLPSILPGQLLNVSV 320

Query: 330  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 389
            +      +++SFL  F G V   HL    P T+   DY  +KK+ AR+L++D  ++ +GL
Sbjct: 321  KQTTPTSLIVSFLGGFEGYVHYQHLPT--PGTSL-TDYAINKKLKARVLWLDTNNKKIGL 377

Query: 390  TLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
            TL   ++       S +++G I  ++ V RV+   G++L +P+    + AY  +  +  E
Sbjct: 378  TLQNEIIKGTGYDFSGMEIGLILHEAIVTRVESRHGVILKLPN---GSFAYSPVRLMYSE 434

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
               K+ KK+  GS   VRI+ + +++GLA   +K +  E   FT +DV PG ++KG V  
Sbjct: 435  RTDKISKKHCVGSVHSVRIVQYNYIDGLAIVSMKENTLEEEYFTINDVTPGSIIKGNVTK 494

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSE-FEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTH 565
            +   G  V     +   CPL  +S+   + K  KK   GA +  RVL V +    I +T 
Sbjct: 495  ISDKGISVSINNRLNGFCPLSQLSDSAHLKKTLKKLSEGAAVKCRVLKVDTDNNFILLTK 554

Query: 566  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-- 623
            KK++V   L  L+            G I  I   G  +RFYN + GF P  EL       
Sbjct: 555  KKSIVSCDLPPLTDVRTVKPGEEYTGEIINIVDKGLIIRFYNNITGFLPNVELSSTSTQV 614

Query: 624  -CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP 682
               PS  + +GQV++ R++S    + ++ LS   +    +E    + G L+   V  V  
Sbjct: 615  ILSPSQFFKIGQVLQTRVLSVDIDNNKVRLSLRKQAPPTTESQ-AQPGDLLECEVTGVAG 673

Query: 683  NAVVVYVIAKGYSKGTIPTEHLADHLE--------HATVM--KSVIKPGYEFDQLLVLDN 732
            N V +    +      IPT  L+D+          H  ++  KS     Y    +LVL  
Sbjct: 674  NGVSLLCNDELI---FIPTPCLSDYAPLNGHLLAYHGRMLSDKSDRNEKYIISNVLVLSG 730

Query: 733  ESSNLLLSAKYSLINS-------AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
             +S   +S     I          ++ P     +H   V+ G V  I   G F+ F   L
Sbjct: 731  ATS---VSPAVGCIKKLIIDDLLKEKYPKTFEELHVGMVLVGVVKRIYSYGVFIEFPNGL 787

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
             G AP     D    D +  Y   Q+V + + ++N     IT+SLK   CS    S    
Sbjct: 788  VGLAPLKYLSDEYITDTNGVYGERQTVFAKVHELNEVRKNITISLK---CSDLKLSLTHS 844

Query: 846  HFLLEEKIAMLQSSKHNGSELKWVEGFII---GSVIEGKVHESNDFGVVVSFEEHSDVYG 902
              L++  +    ++     +L +  G +    G++++G+++  ++    V+ E      G
Sbjct: 845  LPLVQSIVLKQFANLLKEKDLIFSNGVVYYRPGTLVKGQINNISNSLFHVTLESGPSATG 904

Query: 903  FITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 962
            +++     G  V  G  +   ++DV        +SL +  +         ++ +K+K+ +
Sbjct: 905  YVS--MATGGGVCPGDHVTCCVIDVDMETGNYWVSLNSKVM-----KERGKEEEKQKKGK 957

Query: 963  EASKDLGVH------QTVNAIVEIVKENYLVLSLPEYNHSI---GYASVSDYNTQKFPQK 1013
             AS D+  +       TV   +E +   YL+ S+   N S+   G      +    +  K
Sbjct: 958  TASGDINSYFKLEAGHTVTGHIEYINNYYLICSVSTLNQSVLAYGLFDSGQWGVIPYQLK 1017

Query: 1014 QFLNGQSVIATVM---ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
                G  V  TV+   +L +   +G  + LL    E+ + S K   ++ S  +G +V A+
Sbjct: 1018 HLKPGAKVNGTVLQSSSLFNGKMSGPPIFLL---GESNSLSQKIVAQQLSVTIGDIVDAK 1074

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            I +I   +L + FG  + GRIH T + DD       L S F +G  + A+I+    +   
Sbjct: 1075 IIKISDSQLSVSFG-PWKGRIHSTLLADDMEKGSYPL-SKFSVGDVMKAKILKYRKRAGH 1132

Query: 1131 KKSFLWELSIKPSMLTVSEIGSKLLFE------ECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                    S+KP  +       K LF+      E   + G +  G V +V     L+ I+
Sbjct: 1133 --------SVKPGTVHFELTTRKSLFDAEKAKIESSFTTGDKRMGVVREVTKSRLLVDIT 1184

Query: 1185 RHLKAQLFIL---DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
              + A +  L    +  E   L +  + F++G+ V   V                  D I
Sbjct: 1185 PEVSAVICPLLAGSNVNEDGNLLKLTKCFNVGEVVECTV-----------------GDCI 1227

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                   S       I+ GD V GR++ +     GLV+ I  +L G V+ T + +  V  
Sbjct: 1228 EKGQYHGSLTGSLPVINIGDTVCGRVTDV--QYSGLVLSINHYLNGIVYLTNISDYYVPR 1285

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
            PL  ++ G  D LS         C V  I +T +      LSLR S  G++   +     
Sbjct: 1286 PLQYFNIG--DKLS---------CVV--IGKTSK---QFNLSLRKSHTGIN-IPTLPAQP 1328

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
            D   P K +  I DL    +V+GYV +VT  G F+ L   +  +V+L NLSD YV++ E 
Sbjct: 1329 DGSEPDKEINNIADLQEVGVVRGYVSSVTKYGIFVKLGPDVVGRVMLKNLSDQYVQNYES 1388

Query: 1422 EFPIGKLVAGR 1432
               +G LV  +
Sbjct: 1389 CVNVGDLVRAK 1399



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 167/417 (40%), Gaps = 73/417 (17%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 1122
            G L+   + +  P  L + F  GF G +H   +    +++     +++ I + + AR++ 
Sbjct: 313  GQLLNVSVKQTTPTSLIVSFLGGFEGYVHYQHLPTPGTSL-----TDYAINKKLKARVLW 367

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
              +N   +  +   E+ IK +    S +   L+  E  V+  +   G + K+ N      
Sbjct: 368  LDTNNKKIGLTLQNEI-IKGTGYDFSGMEIGLILHEAIVTRVESRHGVILKLPNG----- 421

Query: 1183 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA-VTGHVLSINKEKKLLRLVLRPFQDGI 1241
                          AY P  L   +R   I K    G V S+       R+V   + DG+
Sbjct: 422  ------------SFAYSPVRLMYSERTDKISKKHCVGSVHSV-------RIVQYNYIDGL 462

Query: 1242 SDKTVDISNDNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
            +  ++  +    + F    +  G I+ G ++KI     G+ V I   L G    ++L + 
Sbjct: 463  AIVSMKENTLEEEYFTINDVTPGSIIKGNVTKISDK--GISVSINNRLNGFCPLSQLSD- 519

Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
                  S + +     LS   EG  VKC+VL++       F +       L    S  S 
Sbjct: 520  ------SAHLKKTLKKLS---EGAAVKCRVLKVD--TDNNFIL-------LTKKKSIVSC 561

Query: 1358 DLS--TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA---KVLLSNLS 1412
            DL   TDV T          + P     G + N+  KG  I     +      V LS+ S
Sbjct: 562  DLPPLTDVRT----------VKPGEEYTGEIINIVDKGLIIRFYNNITGFLPNVELSSTS 611

Query: 1413 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL-KTSDSRTASQSEINNLSNLHV 1468
               + SP + F IG+++  RVLSV+  + +V ++L K +   T SQ++  +L    V
Sbjct: 612  TQVILSPSQFFKIGQVLQTRVLSVDIDNNKVRLSLRKQAPPTTESQAQPGDLLECEV 668



 Score = 44.7 bits (104), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G V +V   G  + ++  L+  V L+N+SD YV  P + F IG  ++  V+     SK
Sbjct: 1249 VCGRVTDVQYSGLVLSINHYLNGIVYLTNISDYYVPRPLQYFNIGDKLSCVVIG--KTSK 1306

Query: 1442 RVEVTLKTSDSR------------TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +  ++L+ S +             +    EINN+++L    +V G +  V  YG+F+ +
Sbjct: 1307 QFNLSLRKSHTGINIPTLPAQPDGSEPDKEINNIADLQEVGVVRGYVSSVTKYGIFVKL 1365


>gi|167516896|ref|XP_001742789.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779413|gb|EDQ93027.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1691

 Score =  306 bits (783), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 334/1418 (23%), Positives = 620/1418 (43%), Gaps = 196/1418 (13%)

Query: 186  IFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLS-LLYKGLSLETVQ---------- 231
            +FHVGQ + C V +  +DK+ +     R I  +L +  +L K    +T Q          
Sbjct: 169  LFHVGQQLVCAV-KAKEDKRLLLTTDPRLIHANLDVDDILQKAHRSQTPQLLSLTLMDSR 227

Query: 232  ---------EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL---AENSGIDVKPGLL 279
                     +G +L A V+S+EDHGY++  G+    GFLP        +  G ++ PG  
Sbjct: 228  HWSPPCAHCQGRLLPACVQSVEDHGYVVDLGIDGAQGFLPTKAAKLHVKQLGRNLVPGEP 287

Query: 280  LQGVVR-SIDRTRKVVYLSSDPDTVSKCVTKDLKG--ISIDLLVPGMMVSTRVQSILENG 336
            L  V   +   + +VV +S +   +SK  T +L      +  L PG+ V  +VQ +   G
Sbjct: 288  LFCVTTGTTAGSTRVVQVSIN---ISKLRTAELSTNEAVMSTLRPGLQVRGKVQQVHAKG 344

Query: 337  VMLSFLTYFTGTVDIFHLQ-NTFPTTNWKND--YNQHKKVNARILFVDPTSRAVGLTLN- 392
            ++L    +  G   I H+  +  PT     +  Y   + + AR++F+D  ++ +  +L  
Sbjct: 345  LVLQSGGFSIG---IHHVHFDQLPTEKKTTEQLYTVGQTLTARVIFIDLANKVILASLRQ 401

Query: 393  ----------PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL---DIPSTPVSTPA- 438
                      P  +  R P  HV+            VD+  G+L      P      PA 
Sbjct: 402  PHLQIDDCTLPLPIGTRLPSCHVRF-----------VDQAFGVLAAGQPAPGHARGVPAE 450

Query: 439  --------YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
                    +  IS + EE V  + K ++ G+    R++  +  +G+ +        +   
Sbjct: 451  EDTPEVLGFAHISRLLEEHVETVPKSFRRGTAHEGRVVAQQPFDGIYSFSFAPKDLKVPF 510

Query: 491  FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
                 ++ G++V+G V+++   G +++   G++A  P  H+++  +  P KKFK G ++ 
Sbjct: 511  LAAESIEVGLLVQGSVLSLIPSGMVIELASGIQARVPSEHLADVMLTHPEKKFKAGDKVK 570

Query: 551  FRVLGVKS-----KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
             RVL  +       RI VT KKTLV+S L I+ +  +A   + THG I+K+   GC V F
Sbjct: 571  GRVLSNEKLKGSKHRIKVTLKKTLVRSDLPIIKNMHDAQPGMRTHGCISKVMDKGCIVSF 630

Query: 606  YNGVQGFAP-----RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
            YN  +  +       + +  + GC+         VV+C +++  P    + L+F    T 
Sbjct: 631  YNQARRLSALPLFQNNAILANRGCK-------FMVVECGVLNCDPQENSLILTFRAAKTS 683

Query: 661  VSEDDL-------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
            V++          ++ GSL +  V  V  + + V  +     +  +   HL DH   AT 
Sbjct: 684  VADRGARDAQLKRIEAGSLEAVEVVAVAEDMLTVKFVESPLVQTELRAGHLTDHPSLATA 743

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVCN 771
            +    K G + + + VL+     + +S K  L      + LP +   +    V   Y+ +
Sbjct: 744  LCRTYKKGDKLEAV-VLEKRGRRVTISCKPQLKAQTKVESLPKELDDLKLGQVFPAYIRS 802

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            +++ GCF+  +  L+G  P  +       +    ++  Q+V   + ++N E  R   S+K
Sbjct: 803  VLDYGCFIGTIHGLSGLVPLRQLAKRYVDNPKAFFHPDQTVLVAVSEINKEQNRAVFSMK 862

Query: 832  QSCCSSTDA-SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
            +    +     +MQ    L + +A     K   S  +    +  G  I   + E   FGV
Sbjct: 863  EDVIGAVAVVPYMQS---LAKDMARFAGIKD--SPGRRAAPYHHGQAISVLIQEIKPFGV 917

Query: 891  VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
            V + ++   +  F+T  Q  G   E G  +   +LD+   + ++D++LK   +    +  
Sbjct: 918  VGTTKDGVPI--FVTKEQRQGIECEVGVELPGRVLDIDYEKGVLDVTLKPELVSASSDNG 975

Query: 951  SNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF 1010
             + +  K KR           + V   VE+VK  + V+S PE   ++ Y     YN ++ 
Sbjct: 976  KDSKTGKGKRSHPTKLPFAKKEEVQGRVELVKVTHAVVSGPE--RTLLYCPTQTYNDRRE 1033

Query: 1011 PQKQFLNGQSVIATVMALPS------------SSTAGRLLLLLKAI-------------- 1044
            P K+F+ G     TV+++ +            +S   +L LL   +              
Sbjct: 1034 PFKRFVAGSKATVTVLSVGNPEFVVGQATVQWASQRSQLALLPLYLHFCMLIVRDCFYGW 1093

Query: 1045 -SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV 1103
              E+E ++S+ A       VG +V+AE+T+    +L+L+      GR+  TEV D+    
Sbjct: 1094 KQESEPTTSELA-------VGQVVEAEVTKAGQTQLQLRLPEKRSGRVLATEVLDENDTS 1146

Query: 1104 VENLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKL 1154
             +  F  +  G  +  RI+   ++   +         K  + E S+KPS+L   E+    
Sbjct: 1147 AQP-FKAYHKGDKIQVRILGFRDQKTRRFMPITQKFLKRHVAECSLKPSVLAAKELPP-- 1203

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            + E   V +GQ   G V +V      + ++ +++ ++ +++     ++ +  +++F IG 
Sbjct: 1204 MLEREAVEVGQERWGVVSEVGERCLWVLLAPNVRGRINLVNLGAAATDPKALKKQFGIGM 1263

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
                 ++ +++  KLL L              ++++++ Q  IH G +V   + +I++  
Sbjct: 1264 RHKFRIIIMSE--KLLEL--------------ELASESSQE-IHVGSVVSASLKRIVNRF 1306

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
            G  ++ +G   +G V  T++ +   ++P    D  +      Y         +       
Sbjct: 1307 G--IMHLGHGRFGAVDITDVDDKLHAEPFKTLDRSKV-----YRAVVIGGENLAATGNMG 1359

Query: 1335 RGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1393
                 + LSLR S ++G ++T +S L            ++ED+  + + +G V N T +G
Sbjct: 1360 SAIGDIRLSLRPSEVEGDAATKASVL------------RMEDVDTDQVHRGVVCNATDEG 1407

Query: 1394 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453
             F+ LSR + A+V ++NLSD +V   +K F +G LV GR+++      R+E++LK SD  
Sbjct: 1408 VFVALSRNVTARVQIANLSDLFVRDIKKAFKVGTLVQGRIMA--KTDGRLEMSLKKSDV- 1464

Query: 1454 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
              S + +  +  L  G  V G IKRVESYG+FI I+++
Sbjct: 1465 DPSGTTLLRIDTLEQGQHVTGVIKRVESYGVFIVIDDS 1502



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
             R+ I  ++D     V ++   FK+G  V  RI+AK++          E+S+K S   V 
Sbjct: 1418 ARVQIANLSD---LFVRDIKKAFKVGTLVQGRIMAKTDG-------RLEMSLKKS--DVD 1465

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI--SRHLKAQLFILDSAYEPSELQEF 1206
              G+ LL  +  +  GQ VTG + +V++    + I  S +L     I + A +   +++ 
Sbjct: 1466 PSGTTLLRIDT-LEQGQHVTGVIKRVESYGVFIVIDDSANLTGMAHISECADQ--RIEDL 1522

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVG 1264
             + +  G AV   VL ++ +KK + L ++P  F D    + +D S D       +GD  G
Sbjct: 1523 NKLYSAGDAVKAVVLKVDVDKKRISLGIKPSYFDDAGLPQAMDESADEASA--ADGDASG 1580


>gi|196015125|ref|XP_002117420.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
 gi|190579949|gb|EDV20036.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
          Length = 927

 Score =  296 bits (759), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 218/729 (29%), Positives = 374/729 (51%), Gaps = 55/729 (7%)

Query: 54  FPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG + L+  E       AE DA F+       KK KK K  T   A     D+ S  
Sbjct: 6   FPRGGSNVLSPLEVQNAKRKAEDDALFKTTPSTPLKKAKKIKSNTPATAKG--KDIPSTD 63

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
            D +S       + IT+     G+ + G+V E+N  D+ + LPG L G   + + +  + 
Sbjct: 64  KDEVS------VDAITISMYKKGVSVLGIVKEINPVDITVSLPGLLTGYIHITQMSSQMT 117

Query: 169 PILDNEIEANE----DNL----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL 220
            +L  ++++ E    D +    L + F +G ++ C+V +++  K +   ++I L++   +
Sbjct: 118 QLLTRQLKSTELDGEDGVTQLDLNSFFRIGDMLRCVVDEVELTKSK--HKRIKLAIDPKI 175

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRN---NLAENSGIDVKP- 276
           L        +Q GM L+ Y++S+EDHGYI+ F + +  GFL +    + A++  ++  P 
Sbjct: 176 LNAKFKANRIQTGMTLSGYIESVEDHGYIVSFEIENLVGFLSQQEGLDYAKSRELEDLPV 235

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           GL +  V++ +    ++V +      V K    +    S D L  G+ V+  +  I   G
Sbjct: 236 GLPVNCVIQKVKDQGRMVTVGVSSSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKG 295

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
             LSFL  F G+V   HL       N      +  KV ARI++VD  S+ + L+L    +
Sbjct: 296 AQLSFLGGFRGSVTADHL-------NQNQSLQERSKVVARIIYVDRKSKKIALSLLNITV 348

Query: 397 HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
           + +   S V++G I + + V+RVD+G+GLLL +     +   YV IS  +++ + K  K+
Sbjct: 349 NGQMDISQVEIGQIIEDAVVLRVDKGVGLLLQLGD---NLKGYVHISRASDKHIDKFGKQ 405

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
           ++ GS  R R++    ++ LA   ++ S  E    ++ D+KPG +V GK+I+++ FG +V
Sbjct: 406 HRAGSKHRCRVIANSLIDELAIITMQQSVLEQQFISYKDIKPGTLVMGKIISLEDFGILV 465

Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 574
           Q    +KALCP  HMS+  +  P KKFK G ++  RVL V  + +R+ +THKK++V S  
Sbjct: 466 QVTDHIKALCPRLHMSDITLKHPEKKFKEGNKIKCRVLTVDARRRRLILTHKKSMVHSSH 525

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
            +++SY EA + +  HG+I+ +  +GCF+ FYN V+GF  +  L       P +++ VGQ
Sbjct: 526 VVITSYEEAQENVTAHGFISSVRSNGCFITFYNNVRGFVHKKYLSTQYIENPETVFFVGQ 585

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVI 690
           VV   I+S    +++++LS  +KP  ++      L    S VVDV     T   + V + 
Sbjct: 586 VVLTYIVSVDAVNKKLSLS--LKPPALTTSTSSNLKFNQSKVVDVDLFRATAEGLDVLMQ 643

Query: 691 AKGYSKGTIPTEHLADH-------LEHATVMKSVIKP-GYEF-DQLLVLDNESSNLLLSA 741
             G +  ++P  HL+D        + + T  +SV K    +F  QL+ +    S+++ S 
Sbjct: 644 PSGLA-ASVPVHHLSDFHSNSRALVNYFTSQQSVNKDVNTKFLKQLVTVGKTKSSVIASR 702

Query: 742 KYSLINSAQ 750
           K SL+++ Q
Sbjct: 703 KQSLVDAVQ 711



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 184/377 (48%), Gaps = 25/377 (6%)

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
           ++ +LKA A EG+ F++  ++ G+ V G +  + + GA + F GG +      H+++ + 
Sbjct: 259 SSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHLNQNQS 318

Query: 537 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           ++  ++ KV A +++  +  KSK+I ++     V  ++ I  S  E   ++I    + ++
Sbjct: 319 LQ--ERSKVVARIIY--VDRKSKKIALSLLNITVNGQMDI--SQVE-IGQIIEDAVVLRV 371

Query: 597 EKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           +K  G  ++  + ++G+   S        +    +  G   +CR++++   S    L+ +
Sbjct: 372 DKGVGLLLQLGDNLKGYVHISRASDKHIDKFGKQHRAGSKHRCRVIAN---SLIDELAII 428

Query: 656 MKPTRVSEDDLV-----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLE 709
                V E   +     K G+LV G +  +    ++V V    + K   P  H++D  L+
Sbjct: 429 TMQQSVLEQQFISYKDIKPGTLVMGKIISLEDFGILVQVT--DHIKALCPRLHMSDITLK 486

Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
           H    +   K G +   ++L +D     L+L+ K S+++S+  + +       N   HG+
Sbjct: 487 HP---EKKFKEGNKIKCRVLTVDARRRRLILTHKKSMVHSSHVVITSYEEAQENVTAHGF 543

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNILDVNSETGRIT 827
           + ++   GCF+ F   + GF  + K +  Q  +  +T ++VGQ V + I+ V++   +++
Sbjct: 544 ISSVRSNGCFITFYNNVRGFVHK-KYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLS 602

Query: 828 LSLKQSCCSSTDASFMQ 844
           LSLK    +++ +S ++
Sbjct: 603 LSLKPPALTTSTSSNLK 619



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 171/430 (39%), Gaps = 88/430 (20%)

Query: 1050 SSSKRAKKKS------SYDV---GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
            SSSK  K K+      SYD    G  V   I +I     +L F  GF G +    +N ++
Sbjct: 258  SSSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHLNQNQ 317

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            S          +    V ARII    K            I  S+L ++  G     +   
Sbjct: 318  S---------LQERSKVVARIIYVDRKSK---------KIALSLLNITVNGQ---MDISQ 356

Query: 1161 VSIGQRVT-GYVYKVDNEWALL-TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
            V IGQ +    V +VD    LL  +  +LK  +                   HI +A   
Sbjct: 357  VEIGQIIEDAVVLRVDKGVGLLLQLGDNLKGYV-------------------HISRASDK 397

Query: 1219 HVLSINKE-----KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI--SKIL 1271
            H+    K+     K   R++     D ++  T+  S    Q FI   DI  G +   KI+
Sbjct: 398  HIDKFGKQHRAGSKHRCRVIANSLIDELAIITMQQSVLEQQ-FISYKDIKPGTLVMGKII 456

Query: 1272 SGVG-GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            S    G++VQ+  H+        + +I +  P     E +F       EG  +KC+VL +
Sbjct: 457  SLEDFGILVQVTDHIKALCPRLHMSDITLKHP-----EKKFK------EGNKIKCRVLTV 505

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                R    + L+ + S+              V +    +   E+   N+   G++ +V 
Sbjct: 506  DARRR---RLILTHKKSM--------------VHSSHVVITSYEEAQENVTAHGFISSVR 548

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            S GCFI     +   V    LS  Y+E+PE  F +G++V   ++SV+ ++K++ ++LK  
Sbjct: 549  SNGCFITFYNNVRGFVHKKYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLSLSLKPP 608

Query: 1451 DSRTASQSEI 1460
               T++ S +
Sbjct: 609  ALTTSTSSNL 618


>gi|449675702|ref|XP_002169396.2| PREDICTED: rRNA biogenesis protein RRP5-like [Hydra magnipapillata]
          Length = 967

 Score =  296 bits (758), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 232/788 (29%), Positives = 386/788 (48%), Gaps = 77/788 (9%)

Query: 54  FPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG   LT  E  ++   AE DA F+  E    K  K +K  T +K  +         
Sbjct: 9   FPRGGAQVLTPLEARKVRSIAEKDALFKKEEPIKKKVKKTEKITTVKKPLKQ-------- 60

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA----- 166
                    +  ++ + K IS G+ + G V ++N+K+ +I LP GL G     D      
Sbjct: 61  ---------KLRDQFSFKYISKGLLILGCVRDINKKEYIIGLPNGLSGYVSFVDVQSFLQ 111

Query: 167 -LDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
            +D I D E + N   L  ++  VGQLV  +V ++D DK   G RKI LS+  S +  G+
Sbjct: 112 EVDYIEDEENQKNAI-LTSSLLSVGQLVPVVVKKIDSDKH--GYRKILLSIFPSDINGGV 168

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
               +   +VL   ++S+EDHG+++ FG   F+GFLP       +  D+K G L+     
Sbjct: 169 KANALHNNLVLWGMIQSMEDHGFVVSFGNKEFSGFLP------GTDSDLKVGQLMWFATT 222

Query: 286 SIDRTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFL 342
            +   +KV+ +S D + +   KC+ K  K  S   L+PG +V  + +   EN G  L F 
Sbjct: 223 KVSSNKKVLTVSLDHNIIIKMKCLQKSAKFTS---LMPGHLVDFKTEKKSENMGFGLIF- 278

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRA 400
               G+ D F  +   P  + +    +H+KV ARI+ +DP ++ +G+TL P L+      
Sbjct: 279 ----GSFDAFVDKRHVPL-DKEIVLIEHEKVEARIIHIDPNTKKIGVTLLPELIKFPKNI 333

Query: 401 PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
             +H  VG++  + +VVR D   GL + +     +T  YV IS   +    KL K +K G
Sbjct: 334 LSNHHSVGEVL-ECQVVRSDSSSGLYMKMSE---NTYGYVHISQTNDNRTTKLGKTFKVG 389

Query: 461 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 520
           +  + R+LGF  ++   T  +K S  E    ++ D+KPGM++ G ++ ++ FG IV+   
Sbjct: 390 TTHKCRVLGFSAMDSAYTLTMKKSILEKQFLSYEDLKPGMLISGTIVTLEDFGCIVKITD 449

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILS 578
            +KALCP  H+++  +  P KKF  G +L FRVL  K   + + VTHKKTLV S   I+S
Sbjct: 450 NIKALCPRLHLADINLKHPEKKFVEGKKLHFRVLRCKPSERSLIVTHKKTLVNSMFPIVS 509

Query: 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
           SY       + HG++T ++  G FV FYN V+   P+SE  L PG    + +++GQV++C
Sbjct: 510 SYNVDVGT-VAHGFVTAVKSFGVFVAFYNNVKALLPKSESRLAPGATVETNFYIGQVLQC 568

Query: 639 RIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSG--------VVDVVTPNA 684
            ++S   ++ ++ +S      F+ +   ++++  +++G +V G        +++V   N 
Sbjct: 569 TVISVDASAEKMVVSLKHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLENN 628

Query: 685 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
           ++V +  K  S   I  E  A+ L+ A+          +F  L V + +      +    
Sbjct: 629 LLVNINQKHLSDFEIINEQWANILKTAS-------NDLQFQDLFVYEKDKKLQTFNTSLK 681

Query: 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            +   +++ S  + +    V  G V +++  G FV     + G  P     D   +D S+
Sbjct: 682 QVIHGRKITS-FNELKVGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDPSE 740

Query: 805 TYYVGQSV 812
            Y V QS+
Sbjct: 741 MYSVHQSL 748



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 136/302 (45%), Gaps = 17/302 (5%)

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +K+I VT    L+K    ILS++  +   ++    +      G +++      G+   S+
Sbjct: 315 TKKIGVTLLPELIKFPKNILSNH-HSVGEVLECQVVRSDSSSGLYMKMSENTYGYVHISQ 373

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVS 674
              +   +    + VG   KCR++          L+    +++   +S +DL K G L+S
Sbjct: 374 TNDNRTTKLGKTFKVGTTHKCRVLGFSAMDSAYTLTMKKSILEKQFLSYEDL-KPGMLIS 432

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 733
           G +  +     +V +      K   P  HLAD +L+H    K V      F  L    +E
Sbjct: 433 GTIVTLEDFGCIVKITDN--IKALCPRLHLADINLKHPE-KKFVEGKKLHFRVLRCKPSE 489

Query: 734 SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
            S L+++ K +L+NS   + S + ++   +V HG+V  +   G FV F   +    P+S+
Sbjct: 490 RS-LIVTHKKTLVNSMFPIVS-SYNVDVGTVAHGFVTAVKSFGVFVAFYNNVKALLPKSE 547

Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
           +     A +   +Y+GQ ++  ++ V++   ++ +SLK       +  F+QE   + ++ 
Sbjct: 548 SRLAPGATVETNFYIGQVLQCTVISVDASAEKMVVSLKH------NDPFIQEKLTINQEK 601

Query: 854 AM 855
           A+
Sbjct: 602 AL 603



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 1337 TFHVELSLRSSLDGMSSTNSS-DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
            TF V  + +  + G S+ +S+  L+       K     EDL P M++ G +  +   GC 
Sbjct: 385  TFKVGTTHKCRVLGFSAMDSAYTLTMKKSILEKQFLSYEDLKPGMLISGTIVTLEDFGCI 444

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            + ++  + A     +L+D  ++ PEK+F  GK +  RVL  +P  + + VT K   +   
Sbjct: 445  VKITDNIKALCPRLHLADINLKHPEKKFVEGKKLHFRVLRCKPSERSLIVTHKK--TLVN 502

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            S   I +  N+ VG +  G +  V+S+G+F+   N 
Sbjct: 503  SMFPIVSSYNVDVGTVAHGFVTAVKSFGVFVAFYNN 538



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 127/310 (40%), Gaps = 35/310 (11%)

Query: 530 HMSEFEIVKP--GKKFKVGA-ELVFRVLGVKSKRITVTHKKTLVKSKL--AILSSYAEAT 584
           H+S+FEI+        K  + +L F+ L V  K   +    T +K  +    ++S+ E  
Sbjct: 637 HLSDFEIINEQWANILKTASNDLQFQDLFVYEKDKKLQTFNTSLKQVIHGRKITSFNELK 696

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
             ++  G ++ +  +G FV    GV G  P   L  +   +PS MY V Q +  ++ +S 
Sbjct: 697 VGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDPSEMYSVHQSLIVKVKTSA 756

Query: 645 PAS------RRI--------NLSFMMKPTRVSEDDLVKLGSLVSG--------VVDVVTP 682
                    R +        N  F+ +   ++++  +++G +V G        +++V   
Sbjct: 757 KVCLLGKNVRSVFGSLGIEHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLE 816

Query: 683 NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742
           N ++V +  K  S   I  E  A+ L+ A+          +F  L V + +      +  
Sbjct: 817 NNLLVNINQKHLSDFEIINEQWANILKTAS-------NDLQFQDLFVYEKDKKLQTFNTS 869

Query: 743 YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +   +++ S  + +    V  G V +++  G FV     + G  P     D   +D 
Sbjct: 870 LKQVIHGRKITS-FNELKVGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDP 928

Query: 803 SKTYYVGQSV 812
           S+ Y V QS+
Sbjct: 929 SEMYSVHQSL 938



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLL----SNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            +  G+V  V S G F+      + K LL    S L+ G   + E  F IG+++   V+SV
Sbjct: 518  VAHGFVTAVKSFGVFVAFYN--NVKALLPKSESRLAPG--ATVETNFYIGQVLQCTVISV 573

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVR 1495
            +  ++++ V+LK +D     +  IN    L +GD+V G  +++    + + +EN  LV 
Sbjct: 574  DASAEKMVVSLKHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLENNLLVN 632


>gi|397510731|ref|XP_003825744.1| PREDICTED: protein RRP5 homolog [Pan paniscus]
          Length = 1803

 Score =  281 bits (720), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 276/1062 (25%), Positives = 483/1062 (45%), Gaps = 138/1062 (12%)

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
            +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G +V
Sbjct: 342  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLV 401

Query: 517  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
            +    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL
Sbjct: 402  KVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKL 461

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
             +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQ
Sbjct: 462  PVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQ 521

Query: 635  VVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNA 684
            VVK  +++  P+  R+ LSF +        +P   S+     +  G LV   V   T + 
Sbjct: 522  VVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKTKDG 581

Query: 685  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
            + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  K +
Sbjct: 582  LEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPA 640

Query: 745  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D      
Sbjct: 641  LVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTST 700

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS---- 858
            S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ     
Sbjct: 701  SDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSL 759

Query: 859  -SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
             S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  VES
Sbjct: 760  MSNRDSVLIQTLAEMTPGMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVES 819

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            G   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ   A
Sbjct: 820  GQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ---A 861

Query: 977  IVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAG 1035
            +V+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T  
Sbjct: 862  VVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG- 920

Query: 1036 RLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEIKP 1076
             LLL ++  +   T    R                     KK +  +G +V   +  IKP
Sbjct: 921  -LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKP 979

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
              + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F +
Sbjct: 980  THVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKY 1034

Query: 1137 -------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDN 1176
                         ELS++PS L    T     S    E+      GQ VT ++  Y V  
Sbjct: 1035 LPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVK 1094

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
            +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L  
Sbjct: 1095 KWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTG 1154

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
                                + EG++  GR+ K+     GL V           F ++  
Sbjct: 1155 THK-----------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FGKIGT 1188

Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
            + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS  +
Sbjct: 1189 VSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTN 1234

Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
             +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S    
Sbjct: 1235 PETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQ 1289

Query: 1417 ESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
             SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1290 HSPSKKTLYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1331



 Score =  157 bits (397), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 153/538 (28%), Positives = 236/538 (43%), Gaps = 70/538 (13%)

Query: 54  FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
           FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8   FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                 S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64  ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                 NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
            + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176 NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236 GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY-------------------NQHKKVNARI 377
           + L+FLT+FTG VD  HL      T + N                     N HK    RI
Sbjct: 296 LTLNFLTFFTGVVDFMHLDPKKAGTYFSNQALSHLSDSKNVFNPEAFKPGNTHK---CRI 352

Query: 378 LFVDPTSRAVGLTLNP------YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
           +          L+L        YL ++   P  V  G        V   +  G+L+ +  
Sbjct: 353 IDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKG-------TVLTIKSYGMLVKVGE 405

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG--- 488
                   + ++D+    ++  EKKY  G  V+ R+L            LK +  E    
Sbjct: 406 QMRGLVPPMHLADIL---MKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLP 462

Query: 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
           ++  ++D KPG+   G +I V  +G IV+F   V+ L P   +S   I  P + F  G
Sbjct: 463 VITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTG 520



 Score = 44.3 bits (103), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 98/242 (40%), Gaps = 42/242 (17%)

Query: 446 AEEEVRKLEK--KYKEG---SCVRVRILGFRHLEGLATG---ILKASAFEGLVFTHSDVK 497
           A+E +R+  K  K K G   +C+  ++ G   +  L+ G   +  A A E   +  +++ 
Sbjct: 220 AQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLL 279

Query: 498 PGMVVKGKVIAVDSFGAIVQF-----------------PGGVKALCPLPHMSEFEIVKPG 540
           PG+VVK +V  V  FG  + F                  G   +   L H+S+ + V   
Sbjct: 280 PGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTYFSNQALSHLSDSKNVFNP 339

Query: 541 KKFKVGAELVFRV--------LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
           + FK G     R+        L + S R ++   + L          Y +     +  G 
Sbjct: 340 EAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYL---------RYHDIEPGAVVKGT 390

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +  I+ +G  V+    ++G  P   L       P   YH+G  VKCR++   P ++++ +
Sbjct: 391 VLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMM 450

Query: 653 SF 654
           + 
Sbjct: 451 TL 452


>gi|332212080|ref|XP_003255151.1| PREDICTED: protein RRP5 homolog [Nomascus leucogenys]
          Length = 1804

 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 192/627 (30%), Positives = 317/627 (50%), Gaps = 49/627 (7%)

Query: 54  FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK-----KKTERKANETVDD 106
           FPRGG   + + E+  +   E D  F+ + E G  K+ K +K     KK + +  E++  
Sbjct: 8   FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRESIKS 67

Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
               F              ++++++  GM++ G V EVNE +LVI LP GL+G  +  + 
Sbjct: 68  AREKF------------EILSVESLCEGMRILGCVKEVNELELVISLPNGLKGFVQVTEI 115

Query: 167 LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
            D      NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL   
Sbjct: 116 CDAYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPK 173

Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
            + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +
Sbjct: 174 NVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
           K G  L  +V  +     VV LS+    VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 234 KVGQYLNCIVEKVKGNGGVVSLSTGHSEVSTAIATEEQSWNLNNLLPGLVVKAQVQKVTP 293

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
            G+ L+FLT+FTG VD  HL                  V A IL + P +R V L+L P 
Sbjct: 294 FGLTLNFLTFFTGVVDFMHLDPX--------XXXXXXXVRACILCIHPRTRVVRLSLRPI 345

Query: 395 LLHNRAPPSHVKV---GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
            L    P + +     G + D   V    +  G    +    +   AY  +S +++ +  
Sbjct: 346 FLQPGRPLTRLSCQNFGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNV 402

Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
              + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S
Sbjct: 403 FNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIQPGAVVKGTVLTIKS 462

Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
           +G +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL
Sbjct: 463 YGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTL 522

Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           ++SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +
Sbjct: 523 IESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERV 582

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMM 656
           ++ GQVVK  +++  P+  R+ LSF +
Sbjct: 583 FYTGQVVKVAVLNCEPSKERMLLSFKL 609



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 248/1044 (23%), Positives = 421/1044 (40%), Gaps = 193/1044 (18%)

Query: 513  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--------LGVKSKRITVT 564
            GA  +   GV A   L H+S+ + V   + FK G     R+        L + S R ++ 
Sbjct: 378  GATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSII 437

Query: 565  HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
              + L          Y +     +  G +  I+ +G  V+    ++G  P   L      
Sbjct: 438  EAQYL---------RYHDIQPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMK 488

Query: 625  EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV-------KLGSLVSGVV 677
             P   YH+G  VKCR++   P ++++ ++  +K T +     V       K G    G +
Sbjct: 489  NPEKKYHIGDEVKCRVLLCDPEAKKLMMT--LKKTLIESKLPVITCYADAKPGLQTHGFI 546

Query: 678  DVVTPNAVVV--YVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 734
              V     +V  Y   +G   K  + TE++ D  E       V+K       + VL+ E 
Sbjct: 547  IRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDP-ERVFYTGQVVK-------VAVLNCEP 598

Query: 735  SN--LLLSAKYS------------------LINSAQ---------------QLPSDASHI 759
            S   +LLS K S                   IN  Q               Q P + S I
Sbjct: 599  SKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLLCRKPALVSTVEGGQDPKNFSEI 658

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 659  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 718

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 875
            + E  R+ LSL+ S C   D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 719  DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 778

Query: 876  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 934
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 779  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 838

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 994
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 839  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 880

Query: 995  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 1053
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 881  HLAAFSLSSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 938

Query: 1054 RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 939  RKDSETVDEDEEVDPSLTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 998

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIK 1141
             + DD         +  K+G+TVTAR+I      DM K+F +             ELS++
Sbjct: 999  HILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVR 1053

Query: 1142 PSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1194
            PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L
Sbjct: 1054 PSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLL 1113

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
             ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++
Sbjct: 1114 LTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE 1160

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1314
                EG++  GR+ K+     GL V      +G++    + ++  S     Y E    PL
Sbjct: 1161 ----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTASIFHMSDS-----YSE---TPL 1204

Query: 1315 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1374
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1205 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1251

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1428
            D+    +++GYV ++   G F  L   +      SN+S     SP K+       P GKL
Sbjct: 1252 DIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSNVSQ---HSPSKKALYNKHLPEGKL 1308

Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDS 1452
            +  RVL +      VE++    D+
Sbjct: 1309 LTARVLRLNHQKNLVELSFLPGDT 1332



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 122/533 (22%), Positives = 218/533 (40%), Gaps = 61/533 (11%)

Query: 446 AEEEVRKLEK--KYKEG---SCVRVRILGFRHLEGLATG---ILKASAFEGLVFTHSDVK 497
           A+E +R+  K  K K G   +C+  ++ G   +  L+TG   +  A A E   +  +++ 
Sbjct: 220 AQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSTGHSEVSTAIATEEQSWNLNNLL 279

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF-----R 552
           PG+VVK +V  V  FG  + F      +    H+             V A ++      R
Sbjct: 280 PGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPXXXXX---XXXVRACILCIHPRTR 336

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           V+ +  + I +   + L +       ++    D +   G+    +K G   R  +GV  +
Sbjct: 337 VVRLSLRPIFLQPGRPLTRLSC---QNFGAVLDDVPVQGFF---KKAGATFRLKDGVLAY 390

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--- 669
           A  S L           +  G   KCRI   I  S+   L+ +   T + E   ++    
Sbjct: 391 ARLSHLSDSKNVFNPEAFKPGNTHKCRI---IDYSQMDELALLSLRTSIIEAQYLRYHDI 447

Query: 670 --GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 727
             G++V G V  +    ++V V  +   +G +P  HLAD L     MK+  K  +  D++
Sbjct: 448 QPGAVVKGTVLTIKSYGMLVKVGEQ--MRGLVPPMHLADIL-----MKNPEKKYHIGDEV 500

Query: 728 ----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
               L+ D E+  L+++ K +LI S   + +  +   P    HG++  + + GC V+F  
Sbjct: 501 KCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN 560

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC--------- 834
            + G  P+ +       D  + +Y GQ V+  +L+      R+ LS K S          
Sbjct: 561 NVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPA 620

Query: 835 -CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             S      +    LL  K A++ S+   G + K       G ++ G V    D+GV + 
Sbjct: 621 GHSQKKGKAINIGQLLCRKPALV-STVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQ 679

Query: 894 FEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
           F   S + G      ++   V S       G  + A + +V + ++ + LSL+
Sbjct: 680 FP--SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLR 730



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 56/284 (19%)

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRISKI 1270
            V   +L I+   +++RL LRP           +S  N    + +  + G     G   ++
Sbjct: 324  VRACILCIHPRTRVVRLSLRPIFLQPGRPLTRLSCQNFGAVLDDVPVQGFFKKAGATFRL 383

Query: 1271 LSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
              GV           Y R+ H ++ KN+             F+P   +  G   KC++++
Sbjct: 384  KDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRIID 420

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
             S+         LSLR+S+                   ++L +  D+ P  +V+G V  +
Sbjct: 421  YSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIQPGAVVKGTVLTI 460

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
             S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK 
Sbjct: 461  KSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK- 519

Query: 1450 SDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
               +T  +S+   I   ++   G    G I RV+ YG  +   N
Sbjct: 520  ---KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN 560


>gi|141795595|gb|AAI39595.1| Pdcd11 protein [Danio rerio]
          Length = 932

 Score =  276 bits (707), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 240/919 (26%), Positives = 459/919 (49%), Gaps = 61/919 (6%)

Query: 54  FPRGGGHSLTQRER--DEIHAEVDAEFEA-VERGLHKKNKKKKKKTERKANETVDDLGSL 110
           FPRGG    T+R++  D I  EVD  F+   +    KK   K+ +  +   + VD+    
Sbjct: 5   FPRGG----TERKKPTDLIPHEVDNLFDTPAKAVKKKKKAVKQDEAPKPKKQKVDE---- 56

Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
             + I          + L++++ G  + G V EV++ ++V+ LP GL G   +    DA 
Sbjct: 57  --ENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAY 114

Query: 168 DPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
             IL+++++ ++  + ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K
Sbjct: 115 TNILNDKLDTDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNK 172

Query: 224 GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
            L+   ++  M L+  V+S+EDHGY++  G+     FLP+   + +S  D+  G  +  +
Sbjct: 173 ALNSVALKPAMTLSGCVESVEDHGYLVDIGIGGSKAFLPKK--STSSKQDLYVGQYVLVL 230

Query: 284 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
           +  +  + +VV LS +P  + K   +  +G ++D L+PG++V   V+ +  +G++++FL+
Sbjct: 231 IEDVKDSGRVVRLSQNPQALVKACAETKQGWTLDNLLPGLLVHGCVKRVTPHGLIVTFLS 290

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 403
            FTG VD  HL     +T     Y++ +++ ARIL+V P++R VGL+L  +LL    PP 
Sbjct: 291 SFTGVVDFLHLDEDKEST-----YSKGQEILARILYVQPSTRQVGLSLRSHLL----PPG 341

Query: 404 HV--------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
                     +VG++    ++  +    G L+ +      + A+V   ++ +E   +L+ 
Sbjct: 342 GAVLDLHFSERVGEVVQGCQMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDT 397

Query: 456 KYKEGSCVRV-RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
            +       + RI+ +  +E +    L+ S+ E   F+  D+K G +V+G VI +   G 
Sbjct: 398 NHLMSQSQHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVIDLQKHGV 457

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 572
            V+    ++ + P  H+++  +  P KKF  G ++  RVL V++++  + +T KK LV+S
Sbjct: 458 YVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSVEAQKKLLILTRKKALVES 517

Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
            L I  SY++A    I+HG++  I++ GC VRFY  V+G  P  EL  +    P  ++ V
Sbjct: 518 TLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFV 577

Query: 633 GQVVKCRIMSSIPASRRINLSFM-MKPTRVSEDDLVKLGSLVSGVVDVVTP----NAVVV 687
           GQVVK +++      + + LSF  +    V E+ + K   +V  +VD        N + V
Sbjct: 578 GQVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEV 637

Query: 688 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLI 746
            +I +   +  +PT HL+DH+ +   +   ++ G     L+ L N +   ++L+ K  L 
Sbjct: 638 SIIPEEV-QAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLK 696

Query: 747 NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
              +   +P + S +     + G+V NI+  G F+ F   + G AP +   D    + S 
Sbjct: 697 AYIEDGAIPKNFSELQVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSG 756

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL-LEEK--IAMLQSSKH 861
            + + Q+V + + +++ E  R  +SLK S  S ++  F       L+E+  I+ +++ + 
Sbjct: 757 IFDIDQTVVAKVTNLDEEKQRFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRG 816

Query: 862 NGSELKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
           +   L  +    +G  ++  V ++ + G V+++ ++ S V    + +   G  +  G  +
Sbjct: 817 DSDVLWKLSALTVGDQMKMIVGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKL 876

Query: 921 QAAILDVAKAERLVDLSLK 939
            A IL +   +  V +SL+
Sbjct: 877 NAVILHIDFVKSQVHVSLR 895



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 104/482 (21%), Positives = 194/482 (40%), Gaps = 77/482 (15%)

Query: 1018 GQSVIATVMALPSSSTAGRL----LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
            GQ V+  +  +  S    RL      L+KA +ET     K+     +   G LV   +  
Sbjct: 224  GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAET-----KQGWTLDNLLPGLLVHGCVKR 278

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            + P  L + F   F G +    +++DK        S +  GQ + ARI+    +P  ++ 
Sbjct: 279  VTPHGLIVTFLSSFTGVVDFLHLDEDKE-------STYSKGQEILARILYV--QPSTRQV 329

Query: 1134 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
                LS++  +L        L F E    +G+ V G          + ++  +  A + +
Sbjct: 330  ---GLSLRSHLLPPGGAVLDLHFSE---RVGEVVQG--------CQMTSLHHYSGALMKM 375

Query: 1194 LDSA---YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1250
            LD +      + L+E +         T H++S  + + +LR++     + I   T+  S+
Sbjct: 376  LDGSRAFVHRNLLKEPKEELD-----TNHLMS--QSQHILRIINYSPIEQIYQATLRWSS 428

Query: 1251 DNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
                 F    I  G IV G +  +     G+ V+IG H+ G +    L ++ + +P    
Sbjct: 429  IETPFFSCQDIKVGQIVEGTVIDLQKH--GVYVRIGEHIRGMIPRIHLADVTLKNP---- 482

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
             E +F P      G  VKC+VL +    +      L+ + +L              V++ 
Sbjct: 483  -EKKFYP------GLKVKCRVLSVEAQKKLLI---LTRKKAL--------------VEST 518

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
                +   D  P  I  G+V  +   GC +     +   V +  L+   V +PE+ F +G
Sbjct: 519  LPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVG 578

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            ++V  +VL  +   K + ++ K+       + +I    +  VG +V  ++ R    GL +
Sbjct: 579  QVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKF-DFIVGKMVDARVCRKVLNGLEV 637

Query: 1487 TI 1488
            +I
Sbjct: 638  SI 639


>gi|115471081|ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group]
 gi|113610675|dbj|BAF21053.1| Os07g0203300, partial [Oryza sativa Japonica Group]
          Length = 689

 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 138/275 (50%), Positives = 188/275 (68%), Gaps = 17/275 (6%)

Query: 1223 INKEKKLLRLVLRPFQ---DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            +N+EK+LLRL     Q   + I +    +S     T   +GDI+GGRI KIL GVGGLV+
Sbjct: 2    VNREKRLLRLKALDSQSLPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVI 59

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            QIGPHL+GRVH+TE+ +  V +P+SG+ EGQ           FVKCKVL++SR+  G+  
Sbjct: 60   QIGPHLHGRVHYTEIVDSWVQEPISGFHEGQ-----------FVKCKVLDVSRSSEGSVR 108

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            V+LSLRSS+   +S  S  L  D        EKI DL P   V+GYVK+V SKGCFIM+S
Sbjct: 109  VDLSLRSSM-CANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYVKSVNSKGCFIMVS 167

Query: 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
            R ++A+++LSNLSD YVE+P+ +FP+G LV GRVLS EP S +VEV+L+ +    + +S+
Sbjct: 168  RTIEARIILSNLSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSD 227

Query: 1460 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
              + S+LHVGDI+ GQ+KRVES+GLF+TI+ + LV
Sbjct: 228  DISYSDLHVGDIIAGQVKRVESFGLFVTIQGSELV 262



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 139/314 (44%), Gaps = 42/314 (13%)

Query: 1064 GSLVQAEITEIKPL--ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            G ++   I +I P    L ++ G   HGR+H TE+ D   + V+   S F  GQ V  ++
Sbjct: 40   GDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD---SWVQEPISGFHEGQFVKCKV 96

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL---------FEEC-DVSIGQRVTGYV 1171
            +  S   +   S   +LS++ SM   S    +L          FE+  D+  G  V GYV
Sbjct: 97   LDVSRSSE--GSVRVDLSLRSSMCANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYV 154

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              V+++   + +SR ++A++ +  S      ++  Q  F +G  V G VLS   +   + 
Sbjct: 155  KSVNSKGCFIMVSRTIEARIIL--SNLSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVE 212

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVH 1290
            + LR      S K+ DIS  ++    H GDI+ G++ ++ S   GL V I G  L    H
Sbjct: 213  VSLRKNTGSKSQKSDDISYSDL----HVGDIIAGQVKRVES--FGLFVTIQGSELVALCH 266

Query: 1291 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
             +EL            DE   D  S +  G  VK K+L+I         V + ++ S  G
Sbjct: 267  VSELS-----------DEPVLDIHSCHKAGDKVKAKILKIDEE---RHRVSIGMKKSYIG 312

Query: 1351 MSSTNSSDLSTDVD 1364
              ST   D S D D
Sbjct: 313  PDSTG--DTSDDED 324



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 10/188 (5%)

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           ++ S FE +    +D+ PG  VKG V +V+S G  +     ++A   L ++S+  +  P 
Sbjct: 133 IRTSRFEKI----NDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQ 188

Query: 541 KKFKVGAELVFRVLGV--KSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
             F VG  +  RVL    +S ++ V+  K T  KS+ +   SY++     I  G + ++E
Sbjct: 189 NDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVE 248

Query: 598 KHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
             G FV      +      SEL  +P  +  S +  G  VK +I+       R+++   M
Sbjct: 249 SFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIG--M 306

Query: 657 KPTRVSED 664
           K + +  D
Sbjct: 307 KKSYIGPD 314


>gi|147794791|emb|CAN60355.1| hypothetical protein VITISV_028402 [Vitis vinifera]
          Length = 446

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 146/251 (58%), Positives = 180/251 (71%), Gaps = 41/251 (16%)

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            ++G++ ++ DFGVV++FE+++DV+GFI+++QL G T E GS +QA +LDVAK E LVDLS
Sbjct: 235  MKGRIQDAKDFGVVINFEKYNDVFGFISYYQLNGTTTERGSPVQAVVLDVAKTEHLVDLS 294

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            LK  F+DR RE +SN Q                                      YN++ 
Sbjct: 295  LKPEFLDRHREDSSNSQ--------------------------------------YNYAT 316

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAK 1056
            GYAS+SDYNTQKF +KQF   QSVIA VMALPS S  G LLL+LK++ E TETSSSKRAK
Sbjct: 317  GYASISDYNTQKFAKKQFPRRQSVIAIVMALPSPSIVGMLLLVLKSVIEATETSSSKRAK 376

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
            KKSSY+VG LVQAEITEIKPLELRLKFGIGFHGR+HI EV D+  NV+EN FSNF+IGQT
Sbjct: 377  KKSSYNVGPLVQAEITEIKPLELRLKFGIGFHGRVHIIEVCDE--NVIENPFSNFRIGQT 434

Query: 1117 VTARIIAKSNK 1127
            V+ARI+AK+NK
Sbjct: 435  VSARIVAKANK 445


>gi|47220309|emb|CAG03343.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2384

 Score =  254 bits (648), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 168/568 (29%), Positives = 295/568 (51%), Gaps = 50/568 (8%)

Query: 128 LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEAN---EDN 181
           L+N+  GM L G V EV + ++ + LP GL+G   +    ++   +L  +++++   E  
Sbjct: 1   LQNVREGMLLLGAVKEVADFEVTVSLPCGLQGYLSIKNICESYTKVLSKQLDSSDIEEIY 60

Query: 182 LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
            LP +F  G ++ C+V +LD  K   G   I LS+   L+ K L+  +++ GMVL+  V 
Sbjct: 61  SLPHLFCPGMVLRCLVAKLDTSKG--GNLSIQLSINPKLVNKALTTSSLKAGMVLSGCVD 118

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
           S+EDHGYI+  G+     FLPR   A NS  ++K G  +   +  +    +VV LS    
Sbjct: 119 SVEDHGYIVDIGIKGTNAFLPRKERA-NSQEELKVGQYVTSALEEVKNDGRVVRLSVSRL 177

Query: 302 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
             S+   +  +G ++  L+PG++V+  ++ + ++G++L FL+ FTG VD  H++    ++
Sbjct: 178 NSSQTCAQSSQGWNLTNLLPGLLVNATIKKVTKHGLILDFLSSFTGQVDFLHMEPEQASS 237

Query: 362 NWKND------------YNQHK-------------KVNARILFVDPTSRAVGLTLNPYLL 396
             + D            ++  K             +V AR+L+V+P++R V L+L  +L+
Sbjct: 238 YKEGDQVKLSLLLLIPVFSDFKLECSMKPCSAPPTQVRARVLYVEPSTRLVALSLRSFLV 297

Query: 397 HNRA-----PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
            +       PP   + G++    K+  V    G +L++P     T A+   + + E + +
Sbjct: 298 QSETRLDLRPPGGDRAGEVVKSCKMTVVHHMSGAVLELPD---KTTAFAHKNHLKEPKEQ 354

Query: 452 KLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
             E +     E SC   RIL F  ++ +    L+ S  +   F + D++ G +V+G V  
Sbjct: 355 LNENRLLAMPEHSC---RILDFSLMDNIHFVTLRKSMIDKPFFRYHDLQAGQIVEGTVSV 411

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHK 566
           + + G +V     VK L P  H+S+  +  P KK+  G ++  RVL V+  SK++ +T K
Sbjct: 412 LLTSGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKCRVLSVEPESKKLYLTRK 471

Query: 567 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           K LV+S L +  ++A+A    ++HG+I  I+  GC VRFYN V+G  P SEL  +P   P
Sbjct: 472 KALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISRP 531

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSF 654
             +++VGQV+K +++       ++ LSF
Sbjct: 532 EDVFYVGQVLKTKVLQCDRQKAKMLLSF 559



 Score =  229 bits (584), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 249/999 (24%), Positives = 443/999 (44%), Gaps = 124/999 (12%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFG-----AIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 544
            +   S++K G +++G V +V   G      +V     VK L P  H+S+  +  P KK+ 
Sbjct: 1091 ILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYT 1150

Query: 545  VGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
             G ++  RVL V+  SK++ +T KK LV+S L +  ++A+A    ++HG+I  I+  GC 
Sbjct: 1151 EGMKIKCRVLSVEPESKKLYLTRKKALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCI 1210

Query: 603  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
            VRFYN V+G  P SEL  +P   P  +++VGQ    R M    A       F  +  +  
Sbjct: 1211 VRFYNDVKGLVPLSELSSEPISRPEDVFYVGQ----RAMEG-AAEEASAPEFDCQVGQKL 1265

Query: 663  EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            E  ++K     SG+   + P+ +          + T+PT HL+DH+ +  ++   ++ G 
Sbjct: 1266 EAKVLK--KTASGLEVAILPDEI----------RATLPTMHLSDHMSNCPLLWECLQEGD 1313

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                L+ ++    N+ L+ K ++  S  +  +  D S I   + + G+V NI+  G FV 
Sbjct: 1314 NISNLICINRGQQNIALTKKPTIRWSLDEGVVAKDFSEIKVGTQLFGWVKNIMPYGVFVE 1373

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F   L G AP+S   D   +D + ++ +GQ+V + + +++ E  R  ++LK S   S   
Sbjct: 1374 FPYGLVGLAPKSAMADRFISDTTASFQLGQTVMAKVTNLDEEKRRFLVTLKISEVISPAG 1433

Query: 841  SFMQE--HFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
              +    + L E K+          SEL + + G  +G  ++  V+ + D G     ++ 
Sbjct: 1434 DVLTRLVNGLQERKVMTEMLLARGASELHQQLAGLSVGQRLKLTVNTTADNGATFVSDDL 1493

Query: 898  SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
                   T   + G  +  G  + A IL +      V +S+ +            R  +K
Sbjct: 1494 HGATVQATRQHVTGVNLVPGQKVTAVILHIDLLSTHVHVSILS------------RLLEK 1541

Query: 958  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 1017
            +K   E SK         A V+ + +++ V+SL          + S  N       Q L 
Sbjct: 1542 RKPLNEGSK-------YTATVQHISQDFAVISLDNTAQLTVIQTSSHLNHMPLSGTQELK 1594

Query: 1018 -GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS--YDVGSLVQAEITEI 1074
             G S+   V+        G  L+        E SS KR   K+S  Y  G +VQA++  +
Sbjct: 1595 LGMSLTVEVIEASCQEAQGLPLV------SWERSSPKRQPTKTSMGYRFGEIVQAKVKSV 1648

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARII----AKSNK- 1127
            KP+ +++    G  G +H++EV D + +V +     F  K G TVTAR+I    A S++ 
Sbjct: 1649 KPIGIQVTLEDGTAGSVHVSEVIDAR-DVCQGYLPTFSVKAGSTVTARVIGGREASSHRF 1707

Query: 1128 -----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEE--CDVSIGQRVTGYVYKVDNEWAL 1180
                 P+ K + L EL++  S L  S     +  +E      +G+ +T +V K   +  +
Sbjct: 1708 LPFSHPNFKYTIL-ELTLISSKLDKSTELKPVSTKEHLNSYKVGEEITCFVLKFHPDKKV 1766

Query: 1181 LTISRH--LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            L ++ H  +   + +L    +P      +  F +G+AV   V+  + + +   L L    
Sbjct: 1767 LEVTTHPGVIGTVELLAMITDPKLATHPENVFKMGQAVYAKVVEASTKPQRFTLSL---- 1822

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
             G+             T + EG +  G +      + GL+VQ+         F  + ++ 
Sbjct: 1823 TGV-------------TQLEEGAVTLGMVIDS-DPLRGLLVQLP--------FGSMGSVA 1860

Query: 1299 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1358
            V+D    Y   + +PL+ Y + Q V+C +L+    + G +  +LSLR           S 
Sbjct: 1861 VTDLADAY---RPNPLNAYRKNQIVRCFLLQ---KINGKW--QLSLR----------PSR 1902

Query: 1359 LSTDVDTPGKHLE--KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
            L+ +   P K LE   + +L    I++GYV +V   G FI LS  +  +  L   +  + 
Sbjct: 1903 LNPEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFIRLSSSITGRAELQKSTKYFC 1962

Query: 1417 ESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
             +        P G L+  +++S++   + V ++L + D+
Sbjct: 1963 SNHSVLCDHLPNGTLITSKIISIDSEEELVSLSLLSEDT 2001



 Score =  144 bits (362), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 215/908 (23%), Positives = 375/908 (41%), Gaps = 175/908 (19%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            ++ G +V G V V+  + +VV++    + KG +P  HL+D      ++K+  K   E  +
Sbjct: 399  LQAGQIVEGTVSVLLTSGMVVHL--SDHVKGLVPRTHLSD-----IILKNPEKKYTEGMK 451

Query: 727  L----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            +    L ++ ES  L L+ K +L+ S+  L    +   P  V HGY+  I + GC VRF 
Sbjct: 452  IKCRVLSVEPESKKLYLTRKKALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFY 511

Query: 783  GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC-------- 834
              + G  P S+      +     +YVGQ +++ +L  + +  ++ LS K++         
Sbjct: 512  NDVKGLVPLSELSSEPISRPEDVFYVGQVLKTKVLQCDRQKAKMLLSFKRAMEGAAEEAS 571

Query: 835  -----C-----------SSTDASFM---------------QEHFL--------------- 848
                 C           S T ASF                +  FL               
Sbjct: 572  APEFDCQVGQAMADRFISDTTASFQLGQTVMAKVTNLDEEKRRFLVTLKISEVISPAGDV 631

Query: 849  -------LEEKIAMLQSSKHNG-SEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                   L+E+ AM +     G SEL + + G  +G  ++  V+ + D G     ++   
Sbjct: 632  LTRLVNGLQERKAMTEMLLARGASELHQQLAGLSVGQRLKLTVNTTADNGATFVSDDLHG 691

Query: 900  VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 959
                 T   + G  +  G  + A IL +      V +S+ +            R  +K+K
Sbjct: 692  ATVQATRQHVTGVNLVPGQKVTAVILHIDLLSTHVHVSILS------------RLLEKRK 739

Query: 960  RKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-G 1018
               E SK         A V+ + +++ V+SL          + S  N       Q L  G
Sbjct: 740  PLNEGSK-------YTATVQHISQDFAVISLDNTAQLTVIQTSSHLNHMPLSGTQELKLG 792

Query: 1019 QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS--YDVGSLVQAEITEIKP 1076
             S+   V+        G  L+        E SS KR   K+S  Y  G +VQA++  +KP
Sbjct: 793  MSLTVEVIEASCQEAQGLPLV------SWERSSPKRQPTKTSMGYRFGEIVQAKVKSVKP 846

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARIIA---KSNKPDMK 1131
            + +++    G  G +H++EV D + +V +     F  K G TVTAR+I     S+   + 
Sbjct: 847  IGIQVTLEDGTAGSVHVSEVIDAR-DVCQGYLPTFSVKAGSTVTARVIGGREASSHSKLD 905

Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH--LKA 1189
            KS      +KP + T   + S          +G+ +T +V K   +  +L ++ H  +  
Sbjct: 906  KS----TELKP-VSTKEHLNS--------YKVGEEITCFVLKFHPDKKVLEVTTHPGVIG 952

Query: 1190 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1249
             + +L    +P      +  F +G+AV   V+  + + +   L L     G+        
Sbjct: 953  TVELLAMITDPKLATHPENVFKMGQAVYAKVVEASTKPQRFTLSL----TGV-------- 1000

Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
                 T + EG +  G +      + GL+VQ+         F  + ++ V+D    Y   
Sbjct: 1001 -----TQLEEGAVTLGMVIDS-DPLRGLLVQLP--------FGSMGSVAVTDLADAY--- 1043

Query: 1310 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1369
            + +PL+ Y + Q V+C +L+    + G +  +LSLR           S L+ +   P K 
Sbjct: 1044 RPNPLNAYRKNQIVRCFLLQ---KINGKW--QLSLR----------PSRLNPEKAKPVKD 1088

Query: 1370 LE--KIEDLSPNMIVQGYVKNVTSKGCFI-----MLSRKLDAKVLLSNLSDGYVESPEKE 1422
            LE   + +L    I++GYV +V   G FI      LS  +   V  ++LSD  +++PEK+
Sbjct: 1089 LEILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLSDHVKGLVPRTHLSDIILKNPEKK 1148

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
            +  G  +  RVLSVEP SK++ +T K +   + S       ++   G +  G I  ++ +
Sbjct: 1149 YTEGMKIKCRVLSVEPESKKLYLTRKKALVES-SLPLFRTFADARPGRVSHGYIVCIKDF 1207

Query: 1483 GLFITIEN 1490
            G  +   N
Sbjct: 1208 GCIVRFYN 1215



 Score = 47.8 bits (112), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            +  DL    IV+G V  + + G  + LS  +   V  ++LSD  +++PEK++  G  +  
Sbjct: 395  RYHDLQAGQIVEGTVSVLLTSGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKC 454

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            RVLSVEP SK++ +T K +   + S       ++   G +  G I  ++ +G  +   N
Sbjct: 455  RVLSVEPESKKLYLTRKKALVES-SLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYN 512


>gi|346324040|gb|EGX93638.1| Nucleic acid-binding, OB-fold-like protein [Cordyceps militaris CM01]
          Length = 1774

 Score =  253 bits (646), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 351/1446 (24%), Positives = 602/1446 (41%), Gaps = 184/1446 (12%)

Query: 2    AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
            +A   K    S  D PK   A KN   +  K                D+ P+FPRGG   
Sbjct: 18   SAKQSKEANPSKTDTPKPTDAPKNAVVSRLK----------------DEEPLFPRGGASV 61

Query: 62   LTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPR 121
            LT  E+ +I  E  A+  A +       K +KK+    A++  D       D  S K+  
Sbjct: 62   LTPLEQKQIQLEAKAD-AAHDDEFSTGGKPQKKQKRVGASKKSDKKTETKSDDDSVKI-- 118

Query: 122  YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN--- 178
                +  K +  G  + G +  +N   L + LP  L G      A+   L N +++    
Sbjct: 119  --ESLNFKKLVKGSIVLGQITRINNLALEVALPNNLTGHVSIV-AISEQLTNRLQSGAKD 175

Query: 179  --------------EDNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYK 223
                          ED  L +IF VGQ +   VL  +D       KRKI LSLR +    
Sbjct: 176  EDVDEKEDESDGEGEDVDLKSIFEVGQFLRAYVLSTVDGAVSGKSKRKIELSLRPTEANT 235

Query: 224  GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-------VKP 276
            GL+ +       + A V S+EDHG I+  G+   +GFLP      N+ ID       ++ 
Sbjct: 236  GLTKDDAVPHCTVAAAVASVEDHGCIMDLGIDGLSGFLP------NAEIDATFKRERLQE 289

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G +    V +   + KV  L+   D + K      +  +I+  +PG  V+  +     +G
Sbjct: 290  GAVFLSQVTANQGSGKVAQLTLKQDKIGKVSNHPAEATTINTFLPGTAVNVLITGNSSSG 349

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPY 394
            V    + +   T D+ H       T+ ++ Y    KV ARI+   PTS+   +G+TL P+
Sbjct: 350  VTGKIMGHVDATADLIHSGIGPFGTDVESKYKIGSKVKARIICNFPTSKDPKLGITLLPH 409

Query: 395  LL-----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
            L+            +  P   + +  I +Q  V  V+  +GL +D+    +    +V IS
Sbjct: 410  LMALTKKRPEGPKRSSLPLQVIPIASIVEQCTVRHVEADMGLFVDVGVPGLC--GFVHIS 467

Query: 444  DVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 500
             V + +V  L +    YK GS  + R++G+  ++G+     + +  E       DV  G 
Sbjct: 468  RVKDGKVDALYESSGPYKAGSTHKGRVVGYSEIDGVFQLSFQKTVLEQKYIRQEDVPVGA 527

Query: 501  V----VKGKVIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            V    ++  +I  D   G  +Q   G+    P  H+S+ ++  P KKF+ G ++  RVL 
Sbjct: 528  VLTCDIEKLIINEDGVNGLTLQIAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLS 587

Query: 556  --VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  KRI +T KKTLV S+  I+ SY +        G I K+E  G  ++FY+ ++GF 
Sbjct: 588  NDLIKKRIRLTLKKTLVNSETPIIRSYDDVKVGSQALGTIIKLESSGARIQFYDELRGFL 647

Query: 614  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLV 667
            P SE+      +PS  + VGQVV   ++   P  RR+ +S      F ++     ++  +
Sbjct: 648  PISEMSEAYIRDPSEHFRVGQVVSVHVLDVDPERRRLVVSCKDPGAFGLEKQNALKN--I 705

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFD 725
             LG +VS  V   + + V V  +     K  +P  HL D    ++   +K V   G    
Sbjct: 706  SLGDIVSAKVTQKSEDQVFVE-LEGSLLKAILPVSHLTDKSASKNQFALKRV-SAGQTLS 763

Query: 726  QLLVLDNESS--NLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
             L+V+D   S  ++ L+ K SL+++A +  L        P  +  G+V NI  T  FV+F
Sbjct: 764  NLVVIDKNDSRRSITLTQKPSLVHAAAEGRLLKSFEQARPGKLFAGFVKNITATAVFVQF 823

Query: 782  LGRLTGFAPRSKAVDGQRAD----LSKTYYVGQSVRSNILDVN-------SETGRITLSL 830
             G L    P+++     +A     L K   +   + S I D+N       S      ++ 
Sbjct: 824  AGSLNALLPKARLAPEAQAKPDFGLHKNDSIEVRIVSTIPDLNRIMVAPASAPADQDIAG 883

Query: 831  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
            K     +  A  +    + + K+  ++ ++ N          I+ S ++G++  +N FG 
Sbjct: 884  KSESAKAAPADGLAFGSITQAKVTSIKETQLNVQ--------IVDSGVQGRIDVANVFG- 934

Query: 891  VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFRE 948
              S+++  D       H L  AT   G V++  ++ V  AK  R + +S ++       E
Sbjct: 935  --SWDDIPD-----PKHPL--ATFHKGQVLRVKVVGVHDAKDHRFLPISHRSAH--SILE 983

Query: 949  ANSNRQAQKKKRKREAS-KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYN 1006
              + +         E + + L V QT  A V  + + YL ++L P     I     SD  
Sbjct: 984  LTTRQTDLDDTTPNELTFESLKVGQTHVAFVNNLTQQYLWVNLSPSVRGRISAMEASDDL 1043

Query: 1007 TQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
            +Q    +  F  G ++   V+++ + +      L L A S    +SS       S     
Sbjct: 1044 SQLNDLEGNFPPGSALKVRVVSINAENNH----LDLSARS----ASSNDIVSWDSIKANM 1095

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IA 1123
            ++  +IT++   ++ +K      G +H+ ++ D+   V     + ++ G+ V   +  + 
Sbjct: 1096 ILPGKITKVNERQILVKLSESVSGPVHLPDMADNFDGVNT---TQYRKGEIVRVAVVDVD 1152

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVS--EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
            KSNK          LS +PS +  S   +  K + +   +S G  V G+V  V ++   +
Sbjct: 1153 KSNK-------RLRLSTRPSRIMSSTLPVKDKEISDIAQLSSGDIVRGFVKNVADKGLFV 1205

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
             +   + A + I  S      L+E++  F + + V G ++ I+   K + + L+      
Sbjct: 1206 LLGGQVSALVKI--SNLSDRYLKEWKDEFQVDQMVKGRIIFIDNAAKQIEMSLK------ 1257

Query: 1242 SDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
                VD       T+  I  G IV G++ K+      +++    ++ G  H +++    V
Sbjct: 1258 -SSVVDEDYTPPMTYRDISVGQIVTGKVRKVADFGAFILIDNSANVSGLCHRSQMAENRV 1316

Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1359
                        D    Y EG  VK KVLE          V++  R    G+  T   D 
Sbjct: 1317 Q-----------DATKLYKEGDVVKAKVLE----------VDVEKRKISFGLKPTLFEDE 1355

Query: 1360 STDVDT 1365
             TD+D+
Sbjct: 1356 DTDMDS 1361



 Score =  153 bits (386), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 244/1076 (22%), Positives = 462/1076 (42%), Gaps = 166/1076 (15%)

Query: 473  LEGLATGIL----KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ----FPGGVKA 524
            L G A  +L     +S   G +  H D    ++  G    +  FG  V+        VKA
Sbjct: 333  LPGTAVNVLITGNSSSGVTGKIMGHVDATADLIHSG----IGPFGTDVESKYKIGSKVKA 388

Query: 525  --LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 582
              +C  P           K  K+G  L+  ++ +  KR     + +L    + I S   +
Sbjct: 389  RIICNFPT---------SKDPKLGITLLPHLMALTKKRPEGPKRSSLPLQVIPIASIVEQ 439

Query: 583  ATDRLITHGWITKIEKHGCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKC 638
             T R +           G FV     G+ GF   S +    +D   E S  Y  G   K 
Sbjct: 440  CTVRHVE-------ADMGLFVDVGVPGLCGFVHISRVKDGKVDALYESSGPYKAGSTHKG 492

Query: 639  RIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIA 691
            R++          LSF   +++   + ++D V +G++++  ++  ++  + V  +   IA
Sbjct: 493  RVVGYSEIDGVFQLSFQKTVLEQKYIRQED-VPVGAVLTCDIEKLIINEDGVNGLTLQIA 551

Query: 692  KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLL-----VLDNE--SSNLLLSAKY 743
            +G + G +P  HL+D  L+H         P  +F Q +     VL N+     + L+ K 
Sbjct: 552  EGIT-GFVPERHLSDVKLQH---------PEKKFRQGMKIKARVLSNDLIKKRIRLTLKK 601

Query: 744  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
            +L+NS   +      +   S   G +  +  +G  ++F   L GF P S+  +    D S
Sbjct: 602  TLVNSETPIIRSYDDVKVGSQALGTIIKLESSGARIQFYDELRGFLPISEMSEAYIRDPS 661

Query: 804  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
            + + VGQ V  ++LDV+ E  R+ +S K               F LE++ A+   S    
Sbjct: 662  EHFRVGQVVSVHVLDVDPERRRLVVSCKDPGA-----------FGLEKQNALKNIS---- 706

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI----------THHQLAGAT 913
                      +G ++  KV + ++  V V  E  S +   +          + +Q A   
Sbjct: 707  ----------LGDIVSAKVTQKSEDQVFVELE-GSLLKAILPVSHLTDKSASKNQFALKR 755

Query: 914  VESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
            V +G  +    ++D   + R + L+ K   +     A   R  +  ++ R      G  +
Sbjct: 756  VSAGQTLSNLVVIDKNDSRRSITLTQKPSLV---HAAAEGRLLKSFEQARPGKLFAGFVK 812

Query: 973  TVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFP--QKQFLNGQSVIATVMALP 1029
             + A    V+    L   LP+   +    +  D+   K    + + ++    +  +M  P
Sbjct: 813  NITATAVFVQFAGSLNALLPKARLAPEAQAKPDFGLHKNDSIEVRIVSTIPDLNRIMVAP 872

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFH 1088
            +S+ A + +           S S +A        GS+ QA++T IK  +L ++    G  
Sbjct: 873  ASAPADQDI--------AGKSESAKAAPADGLAFGSITQAKVTSIKETQLNVQIVDSGVQ 924

Query: 1089 GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIAKSNKPDMK--------KSFLWEL 1138
            GRI +  V     ++ +  +  + F  GQ +  +++   +  D +           + EL
Sbjct: 925  GRIDVANVFGSWDDIPDPKHPLATFHKGQVLRVKVVGVHDAKDHRFLPISHRSAHSILEL 984

Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            + + + L      ++L FE   + +GQ    +V  +  ++  + +S  ++ ++  ++++ 
Sbjct: 985  TTRQTDLD-DTTPNELTFES--LKVGQTHVAFVNNLTQQYLWVNLSPSVRGRISAMEASD 1041

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFI 1257
            + S+L + +  F  G A+   V+SIN E   L L  R      S  + DI S D+++  +
Sbjct: 1042 DLSQLNDLEGNFPPGSALKVRVVSINAENNHLDLSAR------SASSNDIVSWDSIKANM 1095

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
                I+ G+I+K+      ++V++   + G VH  ++     +D   G +  Q      Y
Sbjct: 1096 ----ILPGKITKV--NERQILVKLSESVSGPVHLPDM-----ADNFDGVNTTQ------Y 1138

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
             +G+ V+  V+++ ++ +    + LS R S   MSST        +    K +  I  LS
Sbjct: 1139 RKGEIVRVAVVDVDKSNK---RLRLSTRPSRI-MSST--------LPVKDKEISDIAQLS 1186

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
               IV+G+VKNV  KG F++L  ++ A V +SNLSD Y++  + EF + ++V GR++ ++
Sbjct: 1187 SGDIVRGFVKNVADKGLFVLLGGQVSALVKISNLSDRYLKEWKDEFQVDQMVKGRIIFID 1246

Query: 1438 PLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
              +K++E++LK+S  D          ++S   VG IV G++++V  +G FI I+N+
Sbjct: 1247 NAAKQIEMSLKSSVVDEDYTPPMTYRDIS---VGQIVTGKVRKVADFGAFILIDNS 1299



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 105/475 (22%), Positives = 182/475 (38%), Gaps = 80/475 (16%)

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTAGRLLLLLKAISETET 1049
            + S  D    K P   F  GQ +   V+          LP S  +   +L L        
Sbjct: 933  FGSWDDIPDPKHPLATFHKGQVLRVKVVGVHDAKDHRFLPISHRSAHSILELTTRQTDLD 992

Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
             ++       S  VG    A +  +    L +       GRI   E +DD S +  +L  
Sbjct: 993  DTTPNELTFESLKVGQTHVAFVNNLTQQYLWVNLSPSVRGRISAMEASDDLSQL-NDLEG 1051

Query: 1110 NFKIGQTVTARII---AKSNKPDMKKS-------FLWELSIKPSMLTVSEIGSKLLFEEC 1159
            NF  G  +  R++   A++N  D+            W+ SIK +M+              
Sbjct: 1052 NFPPGSALKVRVVSINAENNHLDLSARSASSNDIVSWD-SIKANMI-------------- 1096

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
                   + G + KV+    L+ +S  +   + + D A     +   Q  +  G+ V   
Sbjct: 1097 -------LPGKITKVNERQILVKLSESVSGPVHLPDMADNFDGVNTTQ--YRKGEIVRVA 1147

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1277
            V+ ++K  K LRL  RP +  I   T+ + +  +     +  GDIV G +  +     GL
Sbjct: 1148 VVDVDKSNKRLRLSTRPSR--IMSSTLPVKDKEISDIAQLSSGDIVRGFVKNVADK--GL 1203

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
             V +G  +   V  + L +  + +     DE Q D        Q VK +++ I    +  
Sbjct: 1204 FVLLGGQVSALVKISNLSDRYLKE---WKDEFQVD--------QMVKGRIIFIDNAAK-- 1250

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
              +E+SL+SS+          +  D   P  +     D+S   IV G V+ V   G FI+
Sbjct: 1251 -QIEMSLKSSV----------VDEDYTPPMTY----RDISVGQIVTGKVRKVADFGAFIL 1295

Query: 1398 LSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            +    +   L   S +++  V+   K +  G +V  +VL V+   +++   LK +
Sbjct: 1296 IDNSANVSGLCHRSQMAENRVQDATKLYKEGDVVKAKVLEVDVEKRKISFGLKPT 1350



 Score = 40.0 bits (92), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 10/144 (6%)

Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            F++ Q V  RII   N          E+S+K S++   +    + +   D+S+GQ VTG 
Sbjct: 1232 FQVDQMVKGRIIFIDNAAKQ-----IEMSLKSSVVD-EDYTPPMTYR--DISVGQIVTGK 1283

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            V KV +  A + I            S    + +Q+  + +  G  V   VL ++ EK+ +
Sbjct: 1284 VRKVADFGAFILIDNSANVSGLCHRSQMAENRVQDATKLYKEGDVVKAKVLEVDVEKRKI 1343

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQ 1254
               L+P      D+  D+ +D+ Q
Sbjct: 1344 SFGLKPTL--FEDEDTDMDSDSEQ 1365


>gi|213405933|ref|XP_002173738.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
 gi|212001785|gb|EEB07445.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
          Length = 1703

 Score =  252 bits (643), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 312/1243 (25%), Positives = 538/1243 (43%), Gaps = 110/1243 (8%)

Query: 49   DDVPVFPRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERK------- 99
            D+   FPRGG   LT  E  E+   A+ DA F   +    KK  K+  +++ K       
Sbjct: 43   DNETSFPRGGASVLTPLEYKEVVNEAKRDALFTESKAKPEKKQTKQAARSKSKLSKKSKK 102

Query: 100  -ANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
             AN   DD GS+             +  + K++  G  ++G ++E+N  DL + LP  L 
Sbjct: 103  TANADDDDEGSV-----------PISHFSYKSVVEGTIVFGRISEINTLDLAVSLPNCLT 151

Query: 159  G---LARAADALDPILDNEIEANEDNL---------LPTIFHVGQLVSCIVLQLDDDKKE 206
            G   +   +D+L   LD   E +EDN          L   + VGQ V   V  + +D   
Sbjct: 152  GYVPITSISDSLSERLDKLDEVDEDNKSVAQESFPDLLDFYTVGQWVRARVTSITNDSSS 211

Query: 207  IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL 266
              K++I LSLR   +  GL  +   +G V+   V S EDHG  +  G+  FTGFLP    
Sbjct: 212  KKKKRIELSLRPQDVNGGLGADGFVKGSVIQTVVTSWEDHGIAMDLGIEDFTGFLPLG-- 269

Query: 267  AENSGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMV 325
            A N   +   G  +L  V    DR  ++    + P  + K         S+  ++PG + 
Sbjct: 270  AYNPETEFMEGQTVLCTVTSKKDRVFQLAMHQASPKALDKFP-------SVQAILPGNLA 322

Query: 326  STRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR 385
            +  +  +LENGV    +     T D+ H  +        N++   K   ARIL+  P+S 
Sbjct: 323  NVLITDVLENGVTGKLMGVLNVTSDLMH-SSLSQNERLANEFTIAKTRPARILYTIPSSP 381

Query: 386  -AVGLTLNPYLL-------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
              V +T  P+ +           P   + +G   +++KV  V   LG+  D+    V   
Sbjct: 382  PTVAVTFLPHAVDFNKTSAEQENPLEKLPLGFTVEEAKVSAVSPSLGIFCDVGVEGVRGF 441

Query: 438  AYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDV 496
            A+++ +SD   ++V      Y+  S  + RI GF  ++ L    L+ S  +       D+
Sbjct: 442  AHISRLSDSRVDKVDPSSGDYQLHSTHKARITGFSFVDNLFVLSLQESIIDQPFLRVDDI 501

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
              G V+KG V+ + + G IV+   G+  L P  HM++ ++  P +KFK G  +  RVL V
Sbjct: 502  PVGKVIKGSVVRLFAQGVIVKLSEGINGLVPTAHMADVQLHFPERKFKEGLPVKCRVLAV 561

Query: 557  KS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
             S  KR+ +T KK+L+ S L I+ SY          G   +I   G  V FYN V+GF P
Sbjct: 562  DSDRKRVLLTLKKSLLNSDLPIIDSYESVQPGAKAVGVFARILNTGAVVEFYNHVRGFLP 621

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK---PTRVSEDDLVKLGS 671
             +E+      +    + VGQ V   +++  P +R++ LS   +     R      +++GS
Sbjct: 622  TAEMSEAYIQDARDHFKVGQTVSVTVVNCDPETRKMRLSCREQNWTNERSQRFTDLEVGS 681

Query: 672  LVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
            +VSG V   T N+V+V +   G S  G I   HL+D   +    + S I+   +  ++LV
Sbjct: 682  VVSGAVSQKTENSVIVDL---GNSVNGVIQVGHLSDGDAKKCQKILSKIRATTKLSEVLV 738

Query: 730  L--DNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            L  D E   + L+ K SLI++A+   LP   S +       G+V NI E G F+ F   +
Sbjct: 739  LRKDLEKRIVFLTLKQSLIDAAKAGMLPKTLSDLKEGVKYAGFVKNITEFGVFIEFANGV 798

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK--QSCCSSTDASFM 843
            T  AP++   +      +  +   QS+      ++ E  R  +SLK         D    
Sbjct: 799  TALAPKAYLSENYVPLPAALFKPFQSLTCVCFSIDMEKERALVSLKPLDKVNEKVDEITE 858

Query: 844  QEHFLLEE-KIAMLQSSKHNGSELKWVEGFIIGSV--IEGKVHESNDFGVVVSFEEHSDV 900
             ++ ++E    ++ ++  +   +L W    +I SV   +  +  + +    V   E  D 
Sbjct: 859  SKYVVIEPVDESITKAYDYTTGKLTW---GVISSVKATQLNIDLAKNVHGRVDVSEAFDN 915

Query: 901  YGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            +  I+      +T + G  IQ  +L    AK  + + +S + V   +F E +      K+
Sbjct: 916  FEDISDPSKPFSTFKKGDKIQVRVLGTHDAKNHKFLPISHR-VSPRQFLELSIKPSVMKQ 974

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE--YNHSIGYASVSDYNTQKFPQKQFL 1016
                  +       T  A V       + +S+            + +D  T     ++F 
Sbjct: 975  TEFSGEALTFKKGDTCIAFVNNTTPECIWVSVGSNLRGRIAALDASNDLETLNSITEKFP 1034

Query: 1017 NGQSVIATVMALPSSSTAGRLLLL--LKAISETETSSSKRAKKKSSYDVGSLVQAEITEI 1074
             G ++  TV+      ++G +L L  ++ + + ET S+           G  +   I+ I
Sbjct: 1035 VGSAIQCTVL------SSGEILTLSAMEHVVDYETISA-----------GDKLLGRISNI 1077

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSF 1134
              + + ++      GR+  T+V+DD      +LFS     Q V   +++  + P+ K + 
Sbjct: 1078 NDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSR---NQFVRVYVLS-VDVPNRKIA- 1132

Query: 1135 LWELSIKPSMLTV-SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
               LS + S      EI    +    DV + +   G+V  V +    +T+ R++  ++ I
Sbjct: 1133 ---LSTRASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVTLGRNVVGRVKI 1189

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
              +    S ++E++  F + + V   V+ +++EKK + L L+P
Sbjct: 1190 --AELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIELSLKP 1230



 Score =  170 bits (431), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 225/937 (24%), Positives = 392/937 (41%), Gaps = 153/937 (16%)

Query: 608  GVQGFAPRSELG------LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKP 658
            GV+GFA  S L       +DP    S  Y +    K RI           LS    ++  
Sbjct: 437  GVRGFAHISRLSDSRVDKVDPS---SGDYQLHSTHKARITGFSFVDNLFVLSLQESIIDQ 493

Query: 659  TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 718
              +  DD + +G ++ G V  +    V+V  +++G + G +PT H+AD   H    K   
Sbjct: 494  PFLRVDD-IPVGKVIKGSVVRLFAQGVIVK-LSEGIN-GLVPTAHMADVQLHFPERK--F 548

Query: 719  KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            K G     ++L +D++   +LL+ K SL+NS   +      + P +   G    I+ TG 
Sbjct: 549  KEGLPVKCRVLAVDSDRKRVLLTLKKSLLNSDLPIIDSYESVQPGAKAVGVFARILNTGA 608

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
             V F   + GF P ++  +    D    + VGQ+V   +++ + ET ++ LS ++   ++
Sbjct: 609  VVEFYNHVRGFLPTAEMSEAYIQDARDHFKVGQTVSVTVVNCDPETRKMRLSCREQNWTN 668

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                               +S +    E        +GSV+ G V +  +  V+V     
Sbjct: 669  E------------------RSQRFTDLE--------VGSVVSGAVSQKTENSVIVDL--G 700

Query: 898  SDVYGFITHHQLAGATVESGSVIQAAILDVAK-AERLV---DLSLKTVFIDRFREANSNR 953
            + V G I    L+    +    I + I    K +E LV   DL  + VF+          
Sbjct: 701  NSVNGVIQVGHLSDGDAKKCQKILSKIRATTKLSEVLVLRKDLEKRIVFL---------- 750

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA---------SVSD 1004
                K+   +A+K   + +T++ + E VK    V ++ E+   I +A         +   
Sbjct: 751  --TLKQSLIDAAKAGMLPKTLSDLKEGVKYAGFVKNITEFGVFIEFANGVTALAPKAYLS 808

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-----ETSSSKRA---- 1055
             N    P   F   QS+     ++       R L+ LK + +      E + SK      
Sbjct: 809  ENYVPLPAALFKPFQSLTCVCFSIDMEKE--RALVSLKPLDKVNEKVDEITESKYVVIEP 866

Query: 1056 -----KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLF 1108
                  K   Y  G L    I+ +K  +L +      HGR+ ++E  D+  ++ +    F
Sbjct: 867  VDESITKAYDYTTGKLTWGVISSVKATQLNIDLAKNVHGRVDVSEAFDNFEDISDPSKPF 926

Query: 1109 SNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEI-GSKLLFE 1157
            S FK G  +  R++   +  + K          + FL ELSIKPS++  +E  G  L F+
Sbjct: 927  STFKKGDKIQVRVLGTHDAKNHKFLPISHRVSPRQFL-ELSIKPSVMKQTEFSGEALTFK 985

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
            + D  I      +V     E   +++  +L+ ++  LD++ +   L     +F +G A+ 
Sbjct: 986  KGDTCIA-----FVNNTTPECIWVSVGSNLRGRIAALDASNDLETLNSITEKFPVGSAIQ 1040

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              VLS  +      L L   +  +  +T           I  GD + GRIS I     G+
Sbjct: 1041 CTVLSSGE-----ILTLSAMEHVVDYET-----------ISAGDKLLGRISNI--NDMGM 1082

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
            +VQ+   L GRV  T++            D+ +  P S +   QFV+  VL +    R  
Sbjct: 1083 IVQLPGALSGRVSRTDVS-----------DDFETSPNSLFSRNQFVRVYVLSVDVPNR-- 1129

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
               +++L        ST +S      +     ++  ED+  N + +G+V NV   G F+ 
Sbjct: 1130 ---KIAL--------STRASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVT 1178

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTA 1455
            L R +  +V ++ L D +++  +  F + +LV  +V+ V+   KR+E++LK S   S+ A
Sbjct: 1179 LGRNVVGRVKIAELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIELSLKPSRVSSKEA 1238

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            S  E    S + VG  V G + R E +G+ I ++ T+
Sbjct: 1239 SAKE---FSEIEVGSNVDGTVIRCEDFGVLIRLDGTD 1272



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 139/328 (42%), Gaps = 48/328 (14%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
            + VG  ++C ++SS      + LS M     V + + +  G  + G +  +    ++V +
Sbjct: 1033 FPVGSAIQCTVLSS---GEILTLSAM---EHVVDYETISAGDKLLGRISNINDMGMIVQL 1086

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLIN 747
               G   G +    ++D  E  T   S+     +F ++ VL  D  +  + LS + S   
Sbjct: 1087 --PGALSGRVSRTDVSDDFE--TSPNSLFSRN-QFVRVYVLSVDVPNRKIALSTRASHFE 1141

Query: 748  SAQQL--PSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
              +++  P   S   +  N V  G+V N+ +TG FV     + G    ++  D    +  
Sbjct: 1142 EGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVTLGRNVVGRVKIAELFDSFIKEWK 1201

Query: 804  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
              + V Q V++ ++ V+ E  RI LSLK S  SS +AS                      
Sbjct: 1202 PHFQVSQLVKAKVVHVDQEKKRIELSLKPSRVSSKEAS---------------------A 1240

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------S 916
             E   +E   +GS ++G V    DFGV++  +   ++ G     ++A  TV        +
Sbjct: 1241 KEFSEIE---VGSNVDGTVIRCEDFGVLIRLDGTDNIVGLCHKSEIADTTVNDVTKLYSA 1297

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFID 944
            G  ++A +L V   +R V L LK+ + D
Sbjct: 1298 GDKVRAHVLSVDPEKRRVALGLKSSYFD 1325



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 18/263 (6%)

Query: 583  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
            A D+L+  G I+ I   G  V+    + G   R+++  D    P+S++   Q V+  ++S
Sbjct: 1066 AGDKLL--GRISNINDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSRNQFVRVYVLS 1123

Query: 643  SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT- 701
                +R+I LS   + +   E   +K   + S   + V  N V    +      G   T 
Sbjct: 1124 VDVPNRKIALS--TRASHFEEGKEIKDPEIKS--FEDVEMNRVYRGFVTNVADTGLFVTL 1179

Query: 702  -EHLADHLEHATVMKSVI---KPGYEFDQLLV-----LDNESSNLLLSAKYSLINSAQQL 752
              ++   ++ A +  S I   KP ++  QL+      +D E   + LS K S ++S +  
Sbjct: 1180 GRNVVGRVKIAELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIELSLKPSRVSSKEAS 1239

Query: 753  PSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQ 810
              + S I   S V G V    + G  +R  G   + G   +S+  D    D++K Y  G 
Sbjct: 1240 AKEFSEIEVGSNVDGTVIRCEDFGVLIRLDGTDNIVGLCHKSEIADTTVNDVTKLYSAGD 1299

Query: 811  SVRSNILDVNSETGRITLSLKQS 833
             VR+++L V+ E  R+ L LK S
Sbjct: 1300 KVRAHVLSVDPEKRRVALGLKSS 1322



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 41/284 (14%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            +  + ISAG KL G ++ +N+  +++ LPG L G     D  D   D E   N      +
Sbjct: 1059 VDYETISAGDKLLGRISNINDMGMIVQLPGALSGRVSRTDVSD---DFETSPN------S 1109

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG--------LSLETVQEGMVLT 237
            +F   Q V   VL +D     +  RKI LS R S   +G         S E V+   V  
Sbjct: 1110 LFSRNQFVRVYVLSVD-----VPNRKIALSTRASHFEEGKEIKDPEIKSFEDVEMNRVYR 1164

Query: 238  AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS----IDRTRKV 293
             +V ++ D G  +  G  +  G +    L ++   + KP   +  +V++    +D+ +K 
Sbjct: 1165 GFVTNVADTGLFVTLGR-NVVGRVKIAELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKR 1223

Query: 294  VYLSSDPDTVS--KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 351
            + LS  P  VS  +   K+   I +   V G ++        + GV++  L      V +
Sbjct: 1224 IELSLKPSRVSSKEASAKEFSEIEVGSNVDGTVIRCE-----DFGVLIR-LDGTDNIVGL 1277

Query: 352  FHLQNTFPTTNWKND----YNQHKKVNARILFVDPTSRAVGLTL 391
             H      TT   ND    Y+   KV A +L VDP  R V L L
Sbjct: 1278 CHKSEIADTT--VNDVTKLYSAGDKVRAHVLSVDPEKRRVALGL 1319



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 23/243 (9%)

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
            E +  + +K+  GS ++  +L        +  IL  SA E +V  +  +  G  + G++ 
Sbjct: 1024 ETLNSITEKFPVGSAIQCTVLS-------SGEILTLSAMEHVV-DYETISAGDKLLGRIS 1075

Query: 508  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTH 565
             ++  G IVQ PG +        +S+     P   F     +   VL V   +++I ++ 
Sbjct: 1076 NINDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSRNQFVRVYVLSVDVPNRKIALST 1135

Query: 566  KKTLVKSKLAI----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
            + +  +    I    + S+ +     +  G++T +   G FV     V G    +EL   
Sbjct: 1136 RASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVTLGRNVVGRVKIAELFDS 1195

Query: 622  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-------VKLGSLVS 674
               E    + V Q+VK +++      +RI LS  +KP+RVS  +        +++GS V 
Sbjct: 1196 FIKEWKPHFQVSQLVKAKVVHVDQEKKRIELS--LKPSRVSSKEASAKEFSEIEVGSNVD 1253

Query: 675  GVV 677
            G V
Sbjct: 1254 GTV 1256



 Score = 47.4 bits (111), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 144/355 (40%), Gaps = 49/355 (13%)

Query: 151  ICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR 210
            + +   LRG   A DA      N++E    N +   F VG  + C VL       EI   
Sbjct: 1004 VSVGSNLRGRIAALDA-----SNDLETL--NSITEKFPVGSAIQCTVLS----SGEI--- 1049

Query: 211  KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAEN 269
                 L LS +   +  ET+  G  L   + +I D G I+   LP + +G + R +++++
Sbjct: 1050 -----LTLSAMEHVVDYETISAGDKLLGRISNINDMGMIVQ--LPGALSGRVSRTDVSDD 1102

Query: 270  SGIDVKPGLLL------QGVVRSIDRTRKVVYLSS------DPDTVSKCVTKDLKGISID 317
               +  P  L       +  V S+D   + + LS+      +   +     K  + + ++
Sbjct: 1103 --FETSPNSLFSRNQFVRVYVLSVDVPNRKIALSTRASHFEEGKEIKDPEIKSFEDVEMN 1160

Query: 318  LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
             +  G      V ++ + G+ ++      G V I  L ++F    WK  +   + V A++
Sbjct: 1161 RVYRGF-----VTNVADTGLFVTLGRNVVGRVKIAELFDSF-IKEWKPHFQVSQLVKAKV 1214

Query: 378  LFVDPTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
            + VD   + + L+L P  + ++       S ++VG   D + +   D G+ + LD     
Sbjct: 1215 VHVDQEKKRIELSLKPSRVSSKEASAKEFSEIEVGSNVDGTVIRCEDFGVLIRLDGTDNI 1274

Query: 434  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
            V       I+D    +V KL   Y  G  VR  +L     +      LK+S F+ 
Sbjct: 1275 VGLCHKSEIADTTVNDVTKL---YSAGDKVRAHVLSVDPEKRRVALGLKSSYFDA 1326



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 182/917 (19%), Positives = 338/917 (36%), Gaps = 154/917 (16%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            +  G + ++   G  V+   G+ G  P + +       P   +  G  VKCR+++     
Sbjct: 506  VIKGSVVRLFAQGVIVKLSEGINGLVPTAHMADVQLHFPERKFKEGLPVKCRVLAVDSDR 565

Query: 648  RRINLSFMMKPTRVSED-------DLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTI 699
            +R+ L+  +K + ++ D       + V+ G+   GV   ++   AVV +     + +G +
Sbjct: 566  KRVLLT--LKKSLLNSDLPIIDSYESVQPGAKAVGVFARILNTGAVVEFY---NHVRGFL 620

Query: 700  PTEHLA-----DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPS 754
            PT  ++     D  +H  V ++V         ++  D E+  + LS +    N   +   
Sbjct: 621  PTAEMSEAYIQDARDHFKVGQTVSV------TVVNCDPETRKMRLSCREQ--NWTNERSQ 672

Query: 755  DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
              + +   SVV G V    E    V     + G        DG   D  K   +   +R+
Sbjct: 673  RFTDLEVGSVVSGAVSQKTENSVIVDLGNSVNGVIQVGHLSDG---DAKKCQKILSKIRA 729

Query: 815  N-------ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
                    +L  + E   + L+LKQS   +  A  + +                  S+LK
Sbjct: 730  TTKLSEVLVLRKDLEKRIVFLTLKQSLIDAAKAGMLPKTL----------------SDLK 773

Query: 868  WVEGFIIGSVIEGKVHESNDFGVVVSFEE-----HSDVYGFITHHQLAGATVESGSVIQA 922
                   G    G V    +FGV + F           Y    +  L  A  +    +  
Sbjct: 774  E------GVKYAGFVKNITEFGVFIEFANGVTALAPKAYLSENYVPLPAALFKPFQSLTC 827

Query: 923  AI--LDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK--DLGVHQTVNAIV 978
                +D+ K   LV L       ++  E   ++    +      +K  D    +    ++
Sbjct: 828  VCFSIDMEKERALVSLKPLDKVNEKVDEITESKYVVIEPVDESITKAYDYTTGKLTWGVI 887

Query: 979  EIVKENYLVLSLPEYNH-----SIGYASVSDYNTQKFPQKQFLNGQSVIATVMA------ 1027
              VK   L + L +  H     S  + +  D +    P   F  G  +   V+       
Sbjct: 888  SSVKATQLNIDLAKNVHGRVDVSEAFDNFEDISDPSKPFSTFKKGDKIQVRVLGTHDAKN 947

Query: 1028 ---LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFG 1084
               LP S        L  +I  +    ++ + +  ++  G    A +    P  + +  G
Sbjct: 948  HKFLPISHRVSPRQFLELSIKPSVMKQTEFSGEALTFKKGDTCIAFVNNTTPECIWVSVG 1007

Query: 1085 IGFHGRIHITEVNDDKSNVVENLFS---NFKIGQTVTARIIAKSNKPDMKKSFLWELSIK 1141
                GRI       D SN +E L S    F +G  +   +++                  
Sbjct: 1008 SNLRGRIAAL----DASNDLETLNSITEKFPVGSAIQCTVLSSGE--------------- 1048

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA--YE 1199
              +LT+S +   + +E   +S G ++ G +  +++   ++ +   L  ++   D +  +E
Sbjct: 1049 --ILTLSAMEHVVDYET--ISAGDKLLGRISNINDMGMIVQLPGALSGRVSRTDVSDDFE 1104

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTF- 1256
             S    F R     + V  +VLS++   + + L  R   F++G      +I +  +++F 
Sbjct: 1105 TSPNSLFSR----NQFVRVYVLSVDVPNRKIALSTRASHFEEG-----KEIKDPEIKSFE 1155

Query: 1257 -IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
             +    +  G ++ +     GL V +G ++ GRV   EL +  +          ++ P  
Sbjct: 1156 DVEMNRVYRGFVTNVADT--GLFVTLGRNVVGRVKIAELFDSFIK---------EWKP-- 1202

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
             +   Q VK KV+ + +  +    +ELSL+ S   +SS  +S          K   +IE 
Sbjct: 1203 HFQVSQLVKAKVVHVDQEKK---RIELSLKPSR--VSSKEAS---------AKEFSEIE- 1247

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRV 1433
            +  N  V G V      G  I L    +   L   S ++D  V    K +  G  V   V
Sbjct: 1248 VGSN--VDGTVIRCEDFGVLIRLDGTDNIVGLCHKSEIADTTVNDVTKLYSAGDKVRAHV 1305

Query: 1434 LSVEPLSKRVEVTLKTS 1450
            LSV+P  +RV + LK+S
Sbjct: 1306 LSVDPEKRRVALGLKSS 1322



 Score = 41.6 bits (96), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 145/711 (20%), Positives = 272/711 (38%), Gaps = 122/711 (17%)

Query: 801  DLSKTYYVGQSVRSNILDVNSETG-----RITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            DL   Y VGQ VR+ +  + +++      RI LSL+                        
Sbjct: 187  DLLDFYTVGQWVRARVTSITNDSSSKKKKRIELSLRPQDV-------------------- 226

Query: 856  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 915
                  NG      +GF+ GSVI+  V    D G+ +      D  GF+    L     E
Sbjct: 227  ------NGG--LGADGFVKGSVIQTVVTSWEDHGIAMDL-GIEDFTGFLP---LGAYNPE 274

Query: 916  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 975
            +  +    +L    +++           DR  +   ++ + K   K  + + +      N
Sbjct: 275  TEFMEGQTVLCTVTSKK-----------DRVFQLAMHQASPKALDKFPSVQAILPGNLAN 323

Query: 976  AIVEIVKENYLVLSLPEYNHSIGYASV-SDYNTQKFPQKQFLNGQSVIA------TVMAL 1028
             ++  V EN +   L      +G  +V SD       Q + L  +  IA       +  +
Sbjct: 324  VLITDVLENGVTGKL------MGVLNVTSDLMHSSLSQNERLANEFTIAKTRPARILYTI 377

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP-LELRLKFGI-G 1086
            PSS     +  L  A+   +TS+ +    +      ++ +A+++ + P L +    G+ G
Sbjct: 378  PSSPPTVAVTFLPHAVDFNKTSAEQENPLEKLPLGFTVEEAKVSAVSPSLGIFCDVGVEG 437

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
              G  HI+ ++D + + V+    ++++  T  ARI   S   +     L+ LS++ S++ 
Sbjct: 438  VRGFAHISRLSDSRVDKVDPSSGDYQLHSTHKARITGFSFVDN-----LFVLSLQESII- 491

Query: 1147 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
                  +      D+ +G+ + G V ++  +  ++ +S  +     +  +     +L   
Sbjct: 492  -----DQPFLRVDDIPVGKVIKGSVVRLFAQGVIVKLSEGING--LVPTAHMADVQLHFP 544

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            +R+F  G  V   VL+++ ++K + L L+      S    D+   +    +  G    G 
Sbjct: 545  ERKFKEGLPVKCRVLAVDSDRKRVLLTLKK-----SLLNSDLPIIDSYESVQPGAKAVGV 599

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1326
             ++IL+   G VV+   H+ G +   E+    + D    +  GQ                
Sbjct: 600  FARILN--TGAVVEFYNHVRGFLPTAEMSEAYIQDARDHFKVGQ---------------- 641

Query: 1327 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1386
               +S TV         +R S    + TN            +  ++  DL    +V G V
Sbjct: 642  --TVSVTVVNCDPETRKMRLSCREQNWTN------------ERSQRFTDLEVGSVVSGAV 687

Query: 1387 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV-----EPLSK 1441
               T     + L   ++  + + +LSDG  +  +K   + K+ A   LS      + L K
Sbjct: 688  SQKTENSVIVDLGNSVNGVIQVGHLSDGDAKKCQK--ILSKIRATTKLSEVLVLRKDLEK 745

Query: 1442 R-VEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            R V +TLK S    A    +   LS+L  G    G +K +  +G+FI   N
Sbjct: 746  RIVFLTLKQSLIDAAKAGMLPKTLSDLKEGVKYAGFVKNITEFGVFIEFAN 796


>gi|390604643|gb|EIN14034.1| U3 snoRNP-associated protein Rrp5 [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 1502

 Score =  244 bits (624), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 254/944 (26%), Positives = 425/944 (45%), Gaps = 105/944 (11%)

Query: 8   SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDL--ALPPDDDVPVFPRGGGHSLTQR 65
           ++K+      + NK  + +   S K+   A E  D    L   +DV  FPRGGG +LT  
Sbjct: 4   TKKRQLDAASQSNKPKRAKLDESHKKAERATEKSDQPSTLLVQEDVD-FPRGGGTNLTPM 62

Query: 66  ERDEIHAEVDAEFEAV---ERGLHK--KNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
           E   I AE   E + V   E    K  K +K   K++ K  E          D I  +  
Sbjct: 63  EVKTIRAEAAKEADEVLFKEAATRKSLKGRKSTIKSKAKGGEATKP------DTIRVEHL 116

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPI 170
            Y     L  I+ GMK+ G +  V    L++ LP  L G          L  A +A+D  
Sbjct: 117 NYKASHCLTRITTGMKILGQIVAVQPLALIVSLPNQLMGHIPITQISSQLTSALEAMDEG 176

Query: 171 LDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQL----DDDKKEIG---- 208
            + E +A E +               L  IFHVGQ V C+V  +      D   +G    
Sbjct: 177 DETESDAMESDSRASPSRPHKPRIPELFDIFHVGQFVRCVVTAIHTPGTTDNTGLGLKGR 236

Query: 209 ------KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
                  R++ LS+   L+  G+    ++ G  L+A +KS+EDHGY+L  G+        
Sbjct: 237 GDLEKASRRVELSVAPHLVNAGVVKADLKPGFTLSAAIKSVEDHGYVLDLGMGDGISAFL 296

Query: 263 RNNLAENSGIDVKPGLLLQGVVR----SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL 318
               A+ +  + + GL +  VV     S+ ++ +   +S DP+  +     ++  +S   
Sbjct: 297 SFEAAKQAPWNTEAGLCVGQVVDVNIVSLAKSGRTCTVSVDPEVFTSVSLSEVSNVSS-- 354

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
           ++PG MV   + +++ +G+ L  L YF GTVD+FHL    P   +KN      K+ ARIL
Sbjct: 355 ILPGAMVQCLITAVVPSGLNLQVLGYFEGTVDLFHLPYGTPGDTYKNG----SKIKARIL 410

Query: 379 F-VDPTS-RAVGLTLNPYLL----HNRA--------PPSHVK----VGDIYDQSKVVRVD 420
           + +  TS R   L+L  ++L      RA        P S ++    VG   + +KV+RV+
Sbjct: 411 YDLSATSPRRFALSLAEHILTLSMKGRAAAVDGSSKPLSLLQDDFPVGTTLEAAKVIRVE 470

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLA 477
              GL+L++      T  YV IS V+++ V  L      ++  +  R R+ G+  L+GL 
Sbjct: 471 PERGLVLEVSD---DTNGYVHISQVSDDHVAALSSSSGPWRVSTIHRARVTGYHALDGLL 527

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
              L+ S  E       D + G V+KG V  +      V+  G V  +    H ++  + 
Sbjct: 528 QLSLRPSVLEKRFIQVRDAEVGEVIKGTVKKLTDSALFVEISGNVDGVVWPNHYADITLK 587

Query: 538 KPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
            P K+FK G  +  RVL V  +  RI++T KKTLV+S L I+    +A   L+TH  I +
Sbjct: 588 HPQKRFKPGGSIKCRVLAVNPERNRISLTAKKTLVESPLPIVKQVEDAIVGLVTHAVIFR 647

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           +   G  V F+N ++ F PR E     G + S+   VG+ VK RI+S  PA+ RI  S  
Sbjct: 648 VSDKGLQVEFFNNLKAFVPRKEASDIMGVDLSATIPVGKPVKVRILSVDPATGRITASIR 707

Query: 656 MKPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE-HAT 712
                 S   +  V +G +VSG V  +  + V++  +    +KG +   +LA++    A+
Sbjct: 708 QAVDAQSASPVADVNVGDVVSGSVAELHKDNVLLS-LKPSQAKGLLSLNNLANYRGISAS 766

Query: 713 VMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYV 769
            +++ +  G   + L+V+  N +  +++ A   ++ +     S  S   +   SVV G V
Sbjct: 767 QLRASLVTGEMLNNLVVVSRNANKGIVIVATKPVVRAPMTQGSALSMDTVEVGSVVGGRV 826

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
                 G  ++   R+TG    +   D    + +    V   +++ +++V+    ++ LS
Sbjct: 827 LRHTRKGALIKLNARITGLLHPTDCTDNFE-EGNAFPAVDSILKAVVVEVDKSRNQLVLS 885

Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
           +++S    T  + +++  +L   IA LQ+ +        + GFI
Sbjct: 886 MRRSRMDPTSNNTVEDPEVL--AIADLQAGQT-------IRGFI 920



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 173/767 (22%), Positives = 329/767 (42%), Gaps = 117/767 (15%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            S+ S I P ++V   +  ++ +G  ++ LG   G         G   D   TY  G  ++
Sbjct: 350  SNVSSILPGAMVQCLITAVVPSGLNLQVLGYFEGTVDLFHLPYGTPGD---TYKNGSKIK 406

Query: 814  SNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFL---LEEKIAMLQSSKHNGSELKW 868
            + IL   S T   R  LSL              EH L   ++ + A +  S    S L+ 
Sbjct: 407  ARILYDLSATSPRRFALSLA-------------EHILTLSMKGRAAAVDGSSKPLSLLQ- 452

Query: 869  VEGFIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITH---HQLAGATVESG-----S 918
             + F +G+ +E    +    + G+V+   + ++ Y  I+      +A  +  SG     +
Sbjct: 453  -DDFPVGTTLEAAKVIRVEPERGLVLEVSDDTNGYVHISQVSDDHVAALSSSSGPWRVST 511

Query: 919  VIQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
            + +A +      + L+ LSL+ +V   RF +                 +D  V + +   
Sbjct: 512  IHRARVTGYHALDGLLQLSLRPSVLEKRFIQV----------------RDAEVGEVIKGT 555

Query: 978  VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
            V+ + ++ L + +      + + +     T K PQK+F  G S+   V+A+       R 
Sbjct: 556  VKKLTDSALFVEISGNVDGVVWPNHYADITLKHPQKRFKPGGSIKCRVLAV----NPERN 611

Query: 1038 LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 1097
             + L A      S     K+     VG +  A I  +    L+++F       +   E +
Sbjct: 612  RISLTAKKTLVESPLPIVKQVEDAIVGLVTHAVIFRVSDKGLQVEFFNNLKAFVPRKEAS 671

Query: 1098 DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM--LTVS---EIGS 1152
            D    +  +L +   +G+ V  RI                LS+ P+   +T S    + +
Sbjct: 672  D---IMGVDLSATIPVGKPVKVRI----------------LSVDPATGRITASIRQAVDA 712

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
            +      DV++G  V+G V ++  +  LL++       L  L++      +   Q R  +
Sbjct: 713  QSASPVADVNVGDVVSGSVAELHKDNVLLSLKPSQAKGLLSLNNLANYRGISASQLRASL 772

Query: 1213 GKAVTGHVL------SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
               VTG +L      S N  K ++ +  +P       +   +S D ++     G +VGGR
Sbjct: 773  ---VTGEMLNNLVVVSRNANKGIVIVATKPVVRAPMTQGSALSMDTVEV----GSVVGGR 825

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1326
            +  +     G ++++   + G +H T+    C  +    ++EG   P         +K  
Sbjct: 826  V--LRHTRKGALIKLNARITGLLHPTD----CTDN----FEEGNAFPAVD----SILKAV 871

Query: 1327 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1386
            V+E+ ++      + LS+R S    +S N+      V+ P   +  I DL     ++G++
Sbjct: 872  VVEVDKSRN---QLVLSMRRSRMDPTSNNT------VEDP--EVLAIADLQAGQTIRGFI 920

Query: 1387 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
            K+V+  G ++ML R +DA+V +  L D YV+  +  F   ++V GR+LSV+   K+VE++
Sbjct: 921  KSVSEHGLYVMLGRNIDARVQIRELFDEYVKDWKSRFSPNQIVKGRILSVDQDKKQVEMS 980

Query: 1447 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             ++  S + S++++  LS+L  G  + G++K+VE YG+FI +E + L
Sbjct: 981  FRSVSSSSGSKTKL-LLSDLTEGQKIEGKVKKVEDYGIFIELEGSKL 1026


>gi|260841321|ref|XP_002613865.1| hypothetical protein BRAFLDRAFT_119888 [Branchiostoma floridae]
 gi|229299255|gb|EEN69874.1| hypothetical protein BRAFLDRAFT_119888 [Branchiostoma floridae]
          Length = 1638

 Score =  243 bits (621), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 189/662 (28%), Positives = 323/662 (48%), Gaps = 61/662 (9%)

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
           ++  G +V C++ ++   K   G  +I LSL    + +GL   T++ GMV  +  + ++ 
Sbjct: 87  LYQAGAMVRCVIAEVVTSKS--GHPRILLSLNPRDVNQGLQGTTLKPGMVGISPFQGLKY 144

Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
             Y     L                    +P L L   VRS+    + V L+  P  + K
Sbjct: 145 KMYTAPMRL-------------------AQPLLCL---VRSVVSGGRSVNLTVSPTLLQK 182

Query: 306 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
            V K+   +++D L PG +V   V S+  +G++  FL  FTG+V   HL      T    
Sbjct: 183 AVAKEDLDLTLDTLTPGTLVEATVTSVQNHGILAEFLG-FTGSVSRVHL-----PTKRAE 236

Query: 366 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA---PPSHVKVGDIYDQSKVVRVDRG 422
            Y + ++V A IL++ PT++ VGL+    L   R          +G +Y ++ VV V  G
Sbjct: 237 PYRKGQRVKACILYIHPTTKTVGLSFQSRLWDGRTLVDVQELPAIGTVYKKAPVVHVWSG 296

Query: 423 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 482
           +G+ + + +    TP +  +S ++++ V  +E  +K G+    R++    L+G A   LK
Sbjct: 297 IGVTMKLSA---ETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVINCSPLDGQAIVSLK 353

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            S  E       D+KPG VV+GK+ +V S+G  V     V+ +    H+++  +  P KK
Sbjct: 354 KSVIEQPFLRLQDLKPGQVVEGKITSVQSYGITVSLSNYVRGVVSKIHLADIILKNPAKK 413

Query: 543 FKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           F  G  +  RVL V +  +++ +THK+TL+ SKL I++SY  A      HG++  ++  G
Sbjct: 414 FNEGDMIKCRVLNVATAGRQLALTHKRTLLTSKLPIMASYQAAKPGTWAHGFVLSVQDFG 473

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-- 658
           C V FYN V+G  P+ E+  +   +P  M++ GQVVKCR+MS  PA  ++ +S  +KP  
Sbjct: 474 CIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCNPALEKLTVS--LKPEK 531

Query: 659 --TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
             T V+ D   ++G +V+  V  V P+++ V V     + G +P  HL+DH E+ +++ S
Sbjct: 532 SGTPVAAD--FEVGKMVNVEVTEVKPDSLGVKVQGSD-TPGFLPMMHLSDHQENCSLLLS 588

Query: 717 VIKPGYEFDQLLVLDNESSNLLLSAKYSLIN--SAQQLPSDASHIHPNSVVHGYVCNIIE 774
               G      +   + ++  +++ K SL    ++ Q+    S +  + V+ G+V  +  
Sbjct: 589 RYSVGDVIQDAMYCCSRATGSMVTLKPSLKKAVTSGQVVETFSDLRTDRVLRGWVRTVKP 648

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG--------QSVRSNILDVNSETGRI 826
            G FV F G   G AP++       A  SKT+  G         SVR   LD+ +    +
Sbjct: 649 FGVFVEFPGGWVGLAPKADLT----AVASKTHCQGTNLNVGDSTSVRILHLDIPNNIAEV 704

Query: 827 TL 828
           +L
Sbjct: 705 SL 706



 Score = 77.0 bits (188), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 162/385 (42%), Gaps = 66/385 (17%)

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK--------PDMKKSF---LWE 1137
            G +HI+EV DD     E   +   +G  V  R+I  S+K        P  +  F   ++ 
Sbjct: 873  GIVHISEVKDDVREG-EAPMAKLLVGSIVPGRVIGISHKKVKSLKSLPFSRPGFEEVVYN 931

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIG-----QRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            +S++ S++   +   K L  +  +        Q+V  Y+  + +    +++S  ++ +L 
Sbjct: 932  VSLRESVVKADDKFKKFLLPDEKLRTDVYKEDQKVMFYLQSIQDSHVHVSVSPGVQGKLD 991

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            +L  +    +L+     F    A  G + SI++E   L L                S   
Sbjct: 992  LLSCSDNVEDLKNPPAMFKPKCAYLGTITSIDRESSTLHL----------------SRLG 1035

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1312
              T +  G +V  +++K + G   L +  G    G  + T+L     SD  S       +
Sbjct: 1036 KATKLAPGLVVNAQVAKKVPGKLLLSLPFGGK--GFANLTDL-----SDSYSS------N 1082

Query: 1313 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLSTDVDTPGKHL 1370
            PLS +   Q ++C VLE S       HV +SLR S  G  +   N  D  T         
Sbjct: 1083 PLSTFKVNQLLRCCVLECS----SKRHVRVSLRPSKIGGKVRKINDPDYET--------- 1129

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGK 1427
              +ED+    IV+GYV++    G F  LS K+  +V   + +  +V   +   K FP+GK
Sbjct: 1130 --VEDIVEGDIVRGYVEDCNKHGVFAALSHKVKGRVQYKHATSYFVRKQDELKKFFPVGK 1187

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDS 1452
            LV  +VL V   S  +E++L   D+
Sbjct: 1188 LVTAKVLEVSYKSSHLELSLLEKDT 1212



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 163/371 (43%), Gaps = 37/371 (9%)

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFE 535
           T + KA A E L  T   + PG +V+  V +V + G + +F G  G  +   LP     E
Sbjct: 178 TLLQKAVAKEDLDLTLDTLTPGTLVEATVTSVQNHGILAEFLGFTGSVSRVHLP-TKRAE 236

Query: 536 IVKPGKKFKVGAELVF---RVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITH 590
             + G++ K     +    + +G+ S +  +   +TLV  +   AI + Y +A    + H
Sbjct: 237 PYRKGQRVKACILYIHPTTKTVGL-SFQSRLWDGRTLVDVQELPAIGTVYKKAP---VVH 292

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP----A 646
            W       G  ++      GFA  S+L   P     + +  G    CR+++  P    A
Sbjct: 293 VW----SGIGVTMKLSAETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVINCSPLDGQA 348

Query: 647 SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
              +  S + +P    +D  +K G +V G +  V    + V +    Y +G +   HLAD
Sbjct: 349 IVSLKKSVIEQPFLRLQD--LKPGQVVEGKITSVQSYGITVSL--SNYVRGVVSKIHLAD 404

Query: 707 HLEHATVMKSVIKPGYEFD----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IH 760
                 ++K+  K   E D    ++L +      L L+ K +L+ S  +LP  AS+    
Sbjct: 405 -----IILKNPAKKFNEGDMIKCRVLNVATAGRQLALTHKRTLLTS--KLPIMASYQAAK 457

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
           P +  HG+V ++ + GC V F   + G  P+ +     + D  K +Y GQ V+  ++  N
Sbjct: 458 PGTWAHGFVLSVQDFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCN 517

Query: 821 SETGRITLSLK 831
               ++T+SLK
Sbjct: 518 PALEKLTVSLK 528



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 36/216 (16%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G +V G+I+ + S   G+ V +  ++ G V    L +I + +P   ++EG          
Sbjct: 370  GQVVEGKITSVQSY--GITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDM-------- 419

Query: 1320 GQFVKCKVLEISRTVR--GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
               +KC+VL ++   R     H    L S L  M+S  ++                    
Sbjct: 420  ---IKCRVLNVATAGRQLALTHKRTLLTSKLPIMASYQAA-------------------K 457

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
            P     G+V +V   GC +M    +   +    ++    E P K F  G++V  RV+S  
Sbjct: 458  PGTWAHGFVLSVQDFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCN 517

Query: 1438 PLSKRVEVTLKTSDSRT--ASQSEINNLSNLHVGDI 1471
            P  +++ V+LK   S T  A+  E+  + N+ V ++
Sbjct: 518  PALEKLTVSLKPEKSGTPVAADFEVGKMVNVEVTEV 553



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 159/402 (39%), Gaps = 75/402 (18%)

Query: 750  QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            Q+LP+  +      VVH +       G  ++      GFA  S+  D     +  T+  G
Sbjct: 276  QELPAIGTVYKKAPVVHVWSG----IGVTMKLSAETPGFAAVSQLSDQPVESIENTFKPG 331

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
                  +++ +   G+  +SLK+S              ++E+    LQ  K         
Sbjct: 332  TQHSCRVINCSPLDGQAIVSLKKS--------------VIEQPFLRLQDLKP-------- 369

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQA 922
                 G V+EGK+     +G+ VS   +  V G ++   LA   +++       G +I+ 
Sbjct: 370  -----GQVVEGKITSVQSYGITVSLSNY--VRGVVSKIHLADIILKNPAKKFNEGDMIKC 422

Query: 923  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
             +L+VA A R + L+ K   +       ++ QA K                 +  V  V+
Sbjct: 423  RVLNVATAGRQLALTHKRTLLTSKLPIMASYQAAKPG------------TWAHGFVLSVQ 470

Query: 983  ENYLVLSLPEYNHSIGYASVSDYN--TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL 1040
            +   ++    YN+  G     +     Q+ P+K F  GQ V   VM+   +    +L + 
Sbjct: 471  DFGCIVMF--YNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMS--CNPALEKLTVS 526

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDD 1099
            LK     E S +  A   + ++VG +V  E+TE+KP  L +K  G    G + +  ++D 
Sbjct: 527  LKP----EKSGTPVA---ADFEVGKMVNVEVTEVKPDSLGVKVQGSDTPGFLPMMHLSDH 579

Query: 1100 KSNVVENLFSNFKIGQTVTARIIAKSN--------KPDMKKS 1133
            + N    L S + +G  +   +   S         KP +KK+
Sbjct: 580  QEN-CSLLLSRYSVGDVIQDAMYCCSRATGSMVTLKPSLKKA 620



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 22/175 (12%)

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL-DGMSSTNSSDLSTDVDTPGKHLEKIED 1375
            Y +GQ VK  +L I  T +    V LS +S L DG +  +  +L          +  +  
Sbjct: 238  YRKGQRVKACILYIHPTTKT---VGLSFQSRLWDGRTLVDVQELPA--------IGTVYK 286

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
             +P + V   +      G  + LS +      +S LSD  VES E  F  G   + RV++
Sbjct: 287  KAPVVHVWSGI------GVTMKLSAETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVIN 340

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              PL  +  V+LK    ++  +     L +L  G +V G+I  V+SYG+ +++ N
Sbjct: 341  CSPLDGQAIVSLK----KSVIEQPFLRLQDLKPGQVVEGKITSVQSYGITVSLSN 391



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 7/122 (5%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            +++DL P  +V+G + +V S G  + LS  +   V   +L+D  +++P K+F  G ++  
Sbjct: 363  RLQDLKPGQVVEGKITSVQSYGITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDMIKC 422

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITI 1488
            RVL+V    +++ +T K    RT   S++  +++      G    G +  V+ +G  +  
Sbjct: 423  RVLNVATAGRQLALTHK----RTLLTSKLPIMASYQAAKPGTWAHGFVLSVQDFGCIVMF 478

Query: 1489 EN 1490
             N
Sbjct: 479  YN 480


>gi|405973238|gb|EKC37962.1| RRP5-like protein [Crassostrea gigas]
          Length = 1589

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 213/819 (26%), Positives = 373/819 (45%), Gaps = 101/819 (12%)

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI 175
           LP  A+ +T + ++ GM + G V EV+E  L I LP  L G   L + + A    L    
Sbjct: 105 LPE-AHLLTRQILAPGMLILGCVKEVHEYSLSISLPNNLTGTVALTQISPAYTEQLQRLS 163

Query: 176 EANEDNL---------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS 226
           + +E++L         LPT+F +G +V+C +L + + K+     K+ LSL    + K L+
Sbjct: 164 QMSEEDLMSEDTEVADLPTLFKIGMIVTCKILSVQNSKQ--SGVKVKLSLNPQDINKDLT 221

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQ 281
            E +  GM +   + S+ED GY++  G+     F+   +  +     N G  ++ G  + 
Sbjct: 222 PEGLHNGMAVFGSISSVEDRGYVVDLGIKGVKAFMKSLDAEKYVQLHNEGFPLRVGQPVT 281

Query: 282 GVV--------RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
             +        R++  TR  + ++ DP  V+    KD   +  + L PGM V+TRV  + 
Sbjct: 282 CALKVGEDRMERAVGETR-TINVTIDPSEVATAQIKDAMEVKFNCLAPGMKVATRVMKVC 340

Query: 334 ENG-VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
           ENG V++ FL+ F G+V + HL    P        ++  ++ ARIL++ PT+++V LT  
Sbjct: 341 ENGGVVVKFLS-FKGSVPVTHLSIKTP--------HKGNQMMARILYIQPTTKSVVLTTL 391

Query: 393 PYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           P+++     P     +    GDI + ++V+  D   G  L I        A  ++  +++
Sbjct: 392 PHIVDYSGAPVKTSLTQYDKGDIIEDARVLYTDHKRGAYLKIQD---GVTALASLKSLSD 448

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E+V  L+ ++K  S  R R+LG   ++ +    +K S F     +   + PG + + +V+
Sbjct: 449 EKVTDLKAQFKRDSIHRCRVLGVDLMDNVVHVGMKKSLFSKSFVSLKSLHPGDLFECEVV 508

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTH 565
            +   G IV+  G +  + P  H+++  +  P K+F  G ++  RVL   +  K + +T 
Sbjct: 509 ELKDKGVIVK-SGHISGIIPKMHLADIPLKMPEKRFIPGKKVKCRVLKNDLSKKSLVLTA 567

Query: 566 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625
           K++LV ++L +L+  ++    L T G++ K    G  V FY  V+GF P+ EL  +    
Sbjct: 568 KRSLVNTQLPLLTDLSQLEAGLQTEGYVIKTYSKGVLVGFYANVKGFVPKKELSTEEIAH 627

Query: 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFM--------MKPTRVSEDDLVKLGSLVSGVV 677
           P  +++ GQVVKCR++S       + LSF          K   V ED   ++G  V   V
Sbjct: 628 PEKVFYTGQVVKCRVLSWNLDKGTVTLSFKSDDWKQHGSKLANVPED--FQIGKSVDCKV 685

Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
                  + V +   G S   +P  HL+D L    +M            L V D  S  +
Sbjct: 686 TEKRKTGLDVVLKPSGVS-AFLPRIHLSDSLATCDLM------------LEVTDVGSDGM 732

Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           L             +P     IH               G FV     L G AP     D 
Sbjct: 733 L-------------IPGTVKSIHSR------------FGIFVELPSGLVGLAPNRFVSDR 767

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC--SSTDASFMQEHFLLEEKIAM 855
           Q     + Y++GQ+V + IL  N +  +  +SL+   C   +T+   ++++ +  +KI  
Sbjct: 768 QWQKAKEQYHIGQAVIARILQSNRDDNKCLVSLRMQECYQGNTEVDLVEDYLMALDKIED 827

Query: 856 LQSSKHNGSELKWV-EGFIIGSVIEGKVHESNDFGVVVS 893
            +S    G ++  V +  ++G   +  +++  D G+ VS
Sbjct: 828 QKSRFPPGIKIGGVYKASLVGRSDDKMIYKLADSGISVS 866



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 193/456 (42%), Gaps = 54/456 (11%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           PGM V  +V+ V   G +V      K   P+ H+S   I  P K    G +++ R+L ++
Sbjct: 328 PGMKVATRVMKVCENGGVVVKFLSFKGSVPVTHLS---IKTPHK----GNQMMARILYIQ 380

Query: 558 --SKRITVTHKKTLVKSKLAILSSYAEATDR--LITHGWITKIE-KHGCFVRFYNGVQGF 612
             +K + +T    +V    A + +     D+  +I    +   + K G +++  +GV   
Sbjct: 381 PTTKSVVLTTLPHIVDYSGAPVKTSLTQYDKGDIIEDARVLYTDHKRGAYLKIQDGVTAL 440

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
           A    L  +   +  + +    + +CR++        +++   MK +  S+   V L SL
Sbjct: 441 ASLKSLSDEKVTDLKAQFKRDSIHRCRVLGVDLMDNVVHVG--MKKSLFSKS-FVSLKSL 497

Query: 673 VSGVVDVVTPNAVVV----YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
             G  D+     V +     ++  G+  G IP  HLAD +      K  I PG +  +  
Sbjct: 498 HPG--DLFECEVVELKDKGVIVKSGHISGIIPKMHLAD-IPLKMPEKRFI-PGKKV-KCR 552

Query: 729 VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           VL N+ S  +L+L+AK SL+N+   L +D S +       GYV      G  V F   + 
Sbjct: 553 VLKNDLSKKSLVLTAKRSLVNTQLPLLTDLSQLEAGLQTEGYVIKTYSKGVLVGFYANVK 612

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           GF P+ +    + A   K +Y GQ V+  +L  N + G +TLS K               
Sbjct: 613 GFVPKKELSTEEIAHPEKVFYTGQVVKCRVLSWNLDKGTVTLSFKSD------------- 659

Query: 847 FLLEEKIAMLQSSKHNGSELKWV-EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
                        K +GS+L  V E F IG  ++ KV E    G+ V  +  S V  F+ 
Sbjct: 660 -----------DWKQHGSKLANVPEDFQIGKSVDCKVTEKRKTGLDVVLKP-SGVSAFLP 707

Query: 906 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
              L+ +      +++  + DV     L+  ++K++
Sbjct: 708 RIHLSDSLATCDLMLE--VTDVGSDGMLIPGTVKSI 741



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 16/88 (18%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G++V GR+ K+    G LV  +G    G V  T+L           YDE Q DPLS + +
Sbjct: 1014 GNVVEGRLQKLKKRSGILVNLVG-GAKGVVCLTDL-----------YDEYQNDPLSKFHQ 1061

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSS 1347
            GQ +KC V+++    + T+  +LSLR S
Sbjct: 1062 GQHLKCYVIDLGP--KQTY--QLSLRRS 1085


>gi|171686100|ref|XP_001907991.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943011|emb|CAP68664.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1779

 Score =  237 bits (605), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 336/1340 (25%), Positives = 583/1340 (43%), Gaps = 140/1340 (10%)

Query: 52   PVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            P+FPRGG   LT  E+ +I   A+ D  FE          K KKKK  +     V+ +  
Sbjct: 63   PLFPRGGASVLTPLEQKQIQIQAKNDVLFEEAASKKSGGEKSKKKKARKSKGGEVEPVKD 122

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP 169
               D I          +  K +  G  + G V  +N  D+ + LP  L G      A+  
Sbjct: 123  --EDAIK------VESLNFKRLVKGSLVLGTVCGINLTDVAVALPNNLVGHVPIT-AISD 173

Query: 170  ILDNEIEA-------------NEDNL-LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWL 214
            I    ++A             +++N+ L TIF +GQ V   V+   DD  +   KR I L
Sbjct: 174  IFTQRLQAIAEKDEEEDQADEDDENIDLQTIFRMGQYVRAYVVSTHDDSVDGKPKRHIEL 233

Query: 215  SLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI 272
            SL+ +L   G+S + + E   L A V S+EDHG+++   +      GFLPR  L  + GI
Sbjct: 234  SLQPALANSGMSEQDIVENTTLMASVVSVEDHGFVMDVNISDSKLKGFLPRKQL--DKGI 291

Query: 273  ---DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV 329
                V+PG +L  +  S   + KVV LS+  D +    +   +  +ID  +PG      V
Sbjct: 292  PEESVQPGSVLLCIATSKAASGKVVQLSTLEDRIGSIKSFPSEATTIDSFLPGTAADILV 351

Query: 330  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--V 387
              + E+G++   + +   T D+ H        +  ++Y    ++ ARI+   PT+R   +
Sbjct: 352  SEVTEHGLVGKVMGHLDVTADLVHSNAGPGAVDIVDEYKVGSRIKARIICNFPTARKPKL 411

Query: 388  GLTLNPYLLHNRAPPSHVKVG------DIYDQSKVV------RVDRGLGLLLDIPSTPVS 435
            G++L P++L  +   +  K G      DI   S ++      RV+  +GL +D+    V 
Sbjct: 412  GISLLPHVLSLKPKIAKTKNGIESLPVDILAHSTIIEKCTVQRVEPEIGLYVDVGVEGV- 470

Query: 436  TPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
             P +V IS V + +V  L      YK GS    R++G+   +G+    ++ S  E     
Sbjct: 471  -PGFVHISRVKDGKVDSLFETSGPYKVGSVHAARVVGYNPFDGMYNLSMEKSVLEQPFLR 529

Query: 493  HSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
              D+  G+VV G V  + V+  G    IV+   G+  L P  H+S+  +  P KKF+ G 
Sbjct: 530  IQDIPVGVVVPGVVEKLVVNEHGLGGLIVKVAEGISGLVPEMHLSDVHLQHPEKKFREGM 589

Query: 548  ELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            ++  RVL     R  + +T KKTLV S    + SY E    L T G I K+   G  V+F
Sbjct: 590  KVKTRVLSTNPARHQLRLTLKKTLVNSDAPPVKSYDELAVGLQTFGTIVKLLDRGAIVQF 649

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
            Y  ++GF P SE+      +P   +  GQ +   ++S  P  +R+ +S    P+    + 
Sbjct: 650  YGQLRGFLPVSEMSEAYIQDPKEHFREGQTISVYVLSFDPEEKRMIVS-CKDPSAFGLEK 708

Query: 666  LVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
             V L     G+LV+  V   T + + V ++ +G  K  +P  HL D  +  +  +S +K 
Sbjct: 709  QVALKKLQIGNLVTAKVTQKTEDDIFVELV-EGSLKAILPVRHLTD--KSVSKTQSALKK 765

Query: 721  ---GYEFDQLLVLD-NES-SNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNII 773
                    +L+VL+ NE+  +++LS K SL+ +A+  +L           VV G++ NI 
Sbjct: 766  IHVNQTLTELVVLEKNEARRSIILSHKPSLVEAAKKGKLLHTIDRARVGDVVPGFIRNIT 825

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             T  FV+F GRLT   P++K     +   S  +   QSV   I  V+ +  RI +++   
Sbjct: 826  ATAAFVQFAGRLTALLPKTKLPRDIQDKPSFGFQKLQSVTVKITSVDKDLNRIVVAIPSE 885

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                  A    +    ++ +  L  S      +  +E   IG + + +V  + D  + V 
Sbjct: 886  GGEDVQAKASSKS--ADKAMNALDLS------VLTMEDLPIGKITKARVKSAKDTQINVD 937

Query: 894  FEEHSDVYGFITHHQLAG------------ATVESGSVIQAAILDV--AKAERLVDLSLK 939
              ++  + G I   Q+                 ++G +I   +L +  A+  R + +S +
Sbjct: 938  LADN--IQGRIDVSQVFDKFEDIRSVKKPLGKFKTGDIIDVRVLGIHDARNHRFLPISHR 995

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIG 998
            +        A  +   +    +  +   L V QT  A V  V +N++ ++L P     I 
Sbjct: 996  SSHTVLELSAKPSDLQEGSTPEPLSYAKLEVGQTHLAFVNNVAQNHIWVNLSPNVRGRIS 1055

Query: 999  YASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
               +S D +  +   K F  G   +  V  +   +   RL L  +  +     +  + +K
Sbjct: 1056 AVELSDDLSKLQDVAKSFPIGS--VLQVRVIHVDAERNRLDLSARDPNAENPLTWDKIQK 1113

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
                  G ++  ++T+     + +K      G + + ++ DD         S  +I + V
Sbjct: 1114 ------GMVLPGKVTKTTDNVVFVKLSESVAGPVFLCDLADDYEEANPLKHSKHEIVR-V 1166

Query: 1118 TARIIAKSNKPDMKKSFLWELSIKPSMLTVS--EIGSKLLFEECDVSIGQRVTGYVYKVD 1175
                I KSNK          LS++PS +  S  E+  K + ++  +++G  + G+V  V 
Sbjct: 1167 AVLDIDKSNK-------RLRLSMRPSRVLSSRLEVTDKEITKDTKIAVGDVLRGFVKNVS 1219

Query: 1176 NEWALLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            ++   +T+   + A + I  L  +Y    L++++  F I + V G ++S++  +  L + 
Sbjct: 1220 DKGLFVTLGGDIVAMVQIKNLSDSY----LKDWKEHFQIDQLVKGRIISVSNGR--LEMS 1273

Query: 1234 LRPFQDGISDKTVDISNDNMQ--TF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            LRP           +S D +   TF  + EG IV G++ K+      + +     L G  
Sbjct: 1274 LRPSI---------LSKDYVPPITFSDLKEGQIVTGKVRKVEDFGAFIDIDGSDRLSGLC 1324

Query: 1290 HFTELKNICVSDPLSGYDEG 1309
            H +E+ +  + D  + Y EG
Sbjct: 1325 HRSEMADRAIKDAKALYSEG 1344



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 246/1086 (22%), Positives = 456/1086 (41%), Gaps = 175/1086 (16%)

Query: 473  LEGLATGILKASAFE----GLVFTHSDVKPGMVVK----GKVIAVDSF--GAIVQFPGGV 522
            L G A  IL +   E    G V  H DV   +V      G V  VD +  G+ ++     
Sbjct: 342  LPGTAADILVSEVTEHGLVGKVMGHLDVTADLVHSNAGPGAVDIVDEYKVGSRIK----A 397

Query: 523  KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 582
            + +C  P           +K K+G  L+  VL +K K         + K+K  I S   +
Sbjct: 398  RIICNFPT---------ARKPKLGISLLPHVLSLKPK---------IAKTKNGIESLPVD 439

Query: 583  --ATDRLITHGWITKIEKH-GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQV 635
              A   +I    + ++E   G +V     GV GF   S +    +D   E S  Y VG V
Sbjct: 440  ILAHSTIIEKCTVQRVEPEIGLYVDVGVEGVPGFVHISRVKDGKVDSLFETSGPYKVGSV 499

Query: 636  VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV-------- 687
               R++   P     NLS       V E   +++  +  GVV       +VV        
Sbjct: 500  HAARVVGYNPFDGMYNLSM---EKSVLEQPFLRIQDIPVGVVVPGVVEKLVVNEHGLGGL 556

Query: 688  -YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYS 744
               +A+G S G +P  HL+D HL+H    +   + G +    ++  N + + L L+ K +
Sbjct: 557  IVKVAEGIS-GLVPEMHLSDVHLQHP---EKKFREGMKVKTRVLSTNPARHQLRLTLKKT 612

Query: 745  LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            L+NS          +       G +  +++ G  V+F G+L GF P S+  +    D  +
Sbjct: 613  LVNSDAPPVKSYDELAVGLQTFGTIVKLLDRGAIVQFYGQLRGFLPVSEMSEAYIQDPKE 672

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
             +  GQ++   +L  + E  R+ +S K               F LE+++A+         
Sbjct: 673  HFREGQTISVYVLSFDPEEKRMIVSCKDPSA-----------FGLEKQVAL--------- 712

Query: 865  ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------- 915
                 +   IG+++  KV +  +  + V   E S +   +    L   +V          
Sbjct: 713  -----KKLQIGNLVTAKVTQKTEDDIFVELVEGS-LKAILPVRHLTDKSVSKTQSALKKI 766

Query: 916  --SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
              + ++ +  +L+  +A R + LS K   ++    A   +      R R      G  + 
Sbjct: 767  HVNQTLTELVVLEKNEARRSIILSHKPSLVE---AAKKGKLLHTIDRARVGDVVPGFIRN 823

Query: 974  VNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 1032
            + A    V+    L   LP+             + Q  P   F   QSV   + ++    
Sbjct: 824  ITATAAFVQFAGRLTALLPKTKLP--------RDIQDKPSFGFQKLQSVTVKITSV--DK 873

Query: 1033 TAGRLLLLLKAIS----ETETSSSKRAKKKSSYD----------VGSLVQAEITEIKPLE 1078
               R+++ + +      + + SS    K  ++ D          +G + +A +   K  +
Sbjct: 874  DLNRIVVAIPSEGGEDVQAKASSKSADKAMNALDLSVLTMEDLPIGKITKARVKSAKDTQ 933

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARII----AKSNK--PDM 1130
            + +       GRI +++V D   ++  V+     FK G  +  R++    A++++  P  
Sbjct: 934  INVDLADNIQGRIDVSQVFDKFEDIRSVKKPLGKFKTGDIIDVRVLGIHDARNHRFLPIS 993

Query: 1131 KKS--FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1188
             +S   + ELS KPS L        L + + +V  GQ    +V  V      + +S +++
Sbjct: 994  HRSSHTVLELSAKPSDLQEGSTPEPLSYAKLEV--GQTHLAFVNNVAQNHIWVNLSPNVR 1051

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
             ++  ++ + + S+LQ+  + F IG  +   V+ ++ E+  L L  R           D 
Sbjct: 1052 GRISAVELSDDLSKLQDVAKSFPIGSVLQVRVIHVDAERNRLDLSAR-----------DP 1100

Query: 1249 SNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            + +N  T+  I +G ++ G+++K    V  + V++   + G V   +L +         Y
Sbjct: 1101 NAENPLTWDKIQKGMVLPGKVTKTTDNV--VFVKLSESVAGPVFLCDLAD--------DY 1150

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
            +E   +PL  + + + V+  VL+I ++ +    + LS+R S           LS+ ++  
Sbjct: 1151 EEA--NPLK-HSKHEIVRVAVLDIDKSNK---RLRLSMRPS---------RVLSSRLEVT 1195

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             K + K   ++   +++G+VKNV+ KG F+ L   + A V + NLSD Y++  ++ F I 
Sbjct: 1196 DKEITKDTKIAVGDVLRGFVKNVSDKGLFVTLGGDIVAMVQIKNLSDSYLKDWKEHFQID 1255

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            +LV GR++SV   + R+E++L+ S         I   S+L  G IV G++++VE +G FI
Sbjct: 1256 QLVKGRIISVS--NGRLEMSLRPSILSKDYVPPI-TFSDLKEGQIVTGKVRKVEDFGAFI 1312

Query: 1487 TIENTN 1492
             I+ ++
Sbjct: 1313 DIDGSD 1318



 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 189/904 (20%), Positives = 337/904 (37%), Gaps = 143/904 (15%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G  V+   G+ G  P   L       P   +  G  VK R++S+ PA  ++ L+  +K T
Sbjct: 555  GLIVKVAEGISGLVPEMHLSDVHLQHPEKKFREGMKVKTRVLSTNPARHQLRLT--LKKT 612

Query: 660  RVSED-------DLVKLGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
             V+ D       D + +G    G +V ++   A+V +    G  +G +P   +++   + 
Sbjct: 613  LVNSDAPPVKSYDELAVGLQTFGTIVKLLDRGAIVQFY---GQLRGFLPVSEMSE--AYI 667

Query: 712  TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYV 769
               K   + G      +L  D E   +++S K  S     +Q+      I   ++V   V
Sbjct: 668  QDPKEHFREGQTISVYVLSFDPEEKRMIVSCKDPSAFGLEKQVALKKLQI--GNLVTAKV 725

Query: 770  CNIIETGCFVRFL-GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
                E   FV  + G L    P      K+V   ++ L K  +V Q++   ++   +E  
Sbjct: 726  TQKTEDDIFVELVEGSLKAILPVRHLTDKSVSKTQSALKK-IHVNQTLTELVVLEKNEAR 784

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            R                      +L  K ++++++K  G  L  ++   +G V+ G +  
Sbjct: 785  R--------------------SIILSHKPSLVEAAK-KGKLLHTIDRARVGDVVPGFIRN 823

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
                   V F     +   +   +L     +  S     +  V      VD  L  + + 
Sbjct: 824  ITATAAFVQFAGR--LTALLPKTKLPRDIQDKPSFGFQKLQSVTVKITSVDKDLNRIVVA 881

Query: 945  RFREANSNRQAQKKKRKREAS-----------KDLGVHQTVNAIVEIVKENYLVLSLPE- 992
               E   + QA+   +  + +           +DL + +   A V+  K+  + + L + 
Sbjct: 882  IPSEGGEDVQAKASSKSADKAMNALDLSVLTMEDLPIGKITKARVKSAKDTQINVDLADN 941

Query: 993  ----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTAGRLLL 1039
                 + S  +    D  + K P  +F  G  +   V+          LP S  +   +L
Sbjct: 942  IQGRIDVSQVFDKFEDIRSVKKPLGKFKTGDIIDVRVLGIHDARNHRFLPISHRSSHTVL 1001

Query: 1040 LLKA-ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
             L A  S+ +  S+      +  +VG    A +  +    + +       GRI   E++D
Sbjct: 1002 ELSAKPSDLQEGSTPEPLSYAKLEVGQTHLAFVNNVAQNHIWVNLSPNVRGRISAVELSD 1061

Query: 1099 DKSNVVENLFSNFKIGQTVTARII---AKSNK-------PDMKKSFLWELSIKPSMLTVS 1148
            D S + +++  +F IG  +  R+I   A+ N+       P+ +    W+           
Sbjct: 1062 DLSKL-QDVAKSFPIGSVLQVRVIHVDAERNRLDLSARDPNAENPLTWD----------- 1109

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
                        +  G  + G V K  +    + +S  +   +F+ D A +  E    + 
Sbjct: 1110 -----------KIQKGMVLPGKVTKTTDNVVFVKLSESVAGPVFLCDLADDYEEANPLKH 1158

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
              H  + V   VL I+K  K LRL +RP +   S   V        T I  GD++ G + 
Sbjct: 1159 SKH--EIVRVAVLDIDKSNKRLRLSMRPSRVLSSRLEVTDKEITKDTKIAVGDVLRGFVK 1216

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
             +     GL V +G  +   V    L +  + D    +   Q D        Q VK +++
Sbjct: 1217 NVSDK--GLFVTLGGDIVAMVQIKNLSDSYLKDWKEHF---QID--------QLVKGRII 1263

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
             +S        +E+SLR S+          LS D   P        DL    IV G V+ 
Sbjct: 1264 SVSNG-----RLEMSLRPSI----------LSKDYVPP----ITFSDLKEGQIVTGKVRK 1304

Query: 1389 VTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
            V   G FI +  S +L      S ++D  ++  +  +  G  V  RVL VE  +KR+ + 
Sbjct: 1305 VEDFGAFIDIDGSDRLSGLCHRSEMADRAIKDAKALYSEGDKVKARVLKVEEKTKRINLG 1364

Query: 1447 LKTS 1450
            LK S
Sbjct: 1365 LKPS 1368


>gi|345568479|gb|EGX51373.1| hypothetical protein AOL_s00054g443 [Arthrobotrys oligospora ATCC
           24927]
          Length = 1795

 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 245/896 (27%), Positives = 402/896 (44%), Gaps = 76/896 (8%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKN-------SKKQINDAVEAQDLALPPDDDVPV 53
           MA   + S  K + D PKF K  K   K        ++++  +A   Q      + D P 
Sbjct: 1   MANKRKDSPSKGAADIPKFTKRQKTGPKEPTASKTPAQQEPTEASTMQSSLRKSNKDEPS 60

Query: 54  FPRGGGHSLTQRERDEI--HAEVDAEFEA-VERGLHKKNKKKKKKTERKANETVDDLGSL 110
           FPRGG  +LT  E  E+   A  +A FE   E+     +K  KK+  R +          
Sbjct: 61  FPRGGASALTPLEYKEVVNEATREALFETKAEKAPTAADKSPKKR--RTSAAKGSSSKKH 118

Query: 111 FGDGISGKLPRYA-NKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADA 166
               +  + P     +++ K +  G  ++G ++++ +KD+ I LP  L G   L   ++ 
Sbjct: 119 KKGEVEDEEPEIKIEQLSYKKLVQGQLVFGFISKITKKDVAIALPNNLVGYAPLTSISEQ 178

Query: 167 LDPILDNEIEANEDNL----------------LPTIFHVGQLVSCIVLQLDDDKKEIGKR 210
               L   +E +ED +                L  +F V Q V   V+ +       G++
Sbjct: 179 YTNQLQASLEQDEDGMDIDKDNAEETEAEIPGLDMLFEVNQPVRAYVMNVSTGGTGSGEK 238

Query: 211 K----IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL 266
           K    I LSL  +L   G++   + +G+ L A VKSIED+G+I+  GL   +GF+ +++ 
Sbjct: 239 KQRKHIELSLLPTLTNPGITKTEIVKGITLQASVKSIEDNGFIMDLGLDFVSGFMGKSDC 298

Query: 267 AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTKDLK---GISIDLLVPG 322
                  +K G      V  +    KVV L+SD   ++     KD     G +ID  +PG
Sbjct: 299 GAPPNT-IKVGRTFLCHVLGLASGGKVVQLASDFHKSIKGKSGKDAAVGDGPTIDCFLPG 357

Query: 323 MMVSTR-VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
            M S   V  + +NG++ + +     TVD+FH    F +   +  Y     +  R+L   
Sbjct: 358 TMASKALVTDVQDNGLVCTVMGSIDVTVDLFH-SGCFSSEVLQTKYKAGNHLTVRLLASI 416

Query: 382 PTSRAVGLT---------LNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
           P S               + P     +   S + +G I   + V  +  G+GL+L+I   
Sbjct: 417 PGSDNKKFAGSLLTHVKEMGPQTQSGKLALSKLPIGAIKSDAAVKHIIPGVGLILNIGLG 476

Query: 433 PVSTPAYVTISDVAEEEVRKL--EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
             +T  +V IS ++++++  +     YK GS   +RIL +  ++GL    ++        
Sbjct: 477 --NTMVFVHISRISDKKIDSILTTGPYKVGSKHAIRILDYNSMDGLLLASMEPKILSQRY 534

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
               DVKPG VVKGK+      G +V+   G++A  P  HMS+  +  P KKF+ GA + 
Sbjct: 535 LRMEDVKPGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIVLQHPEKKFREGAAVK 594

Query: 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            R+L V   S+RI +T KK +V S+  + + Y +  +   T G I K+   G  + FY  
Sbjct: 595 GRILRVDTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFYGE 654

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 666
           V+GF P SE+      +P   + VGQ +   ++SS P  +++ LS        S++    
Sbjct: 655 VRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSSKEKAEA 714

Query: 667 ---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH---ATVMKSVIKP 720
              + LGS+V G + +   N  VV  +  G  KG I    L D  +    AT  K  ++ 
Sbjct: 715 LQNIALGSIVEGSI-IEKSNDDVVLSLQDGI-KGLIVLGQLTDGSKEKNLATFKK--LRA 770

Query: 721 GYEFDQLLVL-DNESSNLL-LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETG 776
           G +   L+VL  +E  N++ LS+K SL+ +++   L      +   S V G+V  I   G
Sbjct: 771 GQKLVDLVVLRKDEMRNIVYLSSKPSLVKASKSDTLIKSFLDVKIGSAVAGFVKEITHFG 830

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDVNSETGRITLSLK 831
            FV F+  +T   PR KA+  +  DL    Y+  QS+   + D+     + TLSL+
Sbjct: 831 VFVAFIDGITALLPR-KALPKEVEDLPDFGYHRLQSITCYVTDIIPSREQFTLSLR 885



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 197/441 (44%), Gaps = 52/441 (11%)

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN----LFSNFKIGQTVTARI 1121
            + +  IT IKP ++ +       GR+ ++E   D  ++       L     +GQ +  ++
Sbjct: 930  ITKGRITAIKPTQINIDLADNVKGRVDVSEFFKDWDSIKNKKHPLLRQGLAVGQEIDVKV 989

Query: 1122 IAKSNKPDMKKSFLWELSIKPS-MLTVSEIGSKL-------LFEECDVSIGQRVTGYVYK 1173
            I      D+K      +S + S  L   E+ +K        L +  D+   +    +V  
Sbjct: 990  IGIH---DVKSHKYLPISHRVSGKLPTFELSAKQVTGKANSLVKYSDLKKEETYLAFVNN 1046

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +   + +S  ++ ++ +L+ + + S L + ++ + +G A+   VL +N +   L L 
Sbjct: 1047 VQQDHLWVNLSPSVRGRVKLLEISEDVSALSDLEKHYPVGTALRVSVLDVNVDTGKLDLT 1106

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
             R       +K +D S+      I EG ++  +++KI  G   ++VQ+   + G      
Sbjct: 1107 ARYLG---GNKPLDWSS------IKEGMMIPAKVTKISEG--KVIVQLSETILG------ 1149

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353
              +I ++D    +D+     +  ++    V+  VL +  + +    + LS R S    SS
Sbjct: 1150 --SISLADMADDFDKAD---VKNFNTDSIVRVCVLSVDHSNK---KIRLSTRPSRILDSS 1201

Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
                D+          ++   DL      +G+V NV   G +I L     A+  +S+LSD
Sbjct: 1202 AKVRDV---------EVKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSD 1252

Query: 1414 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
             +V+  +K F + +LV G+++SV+  + ++ + LK S     ++  I +  +   G+ V 
Sbjct: 1253 EFVKDWKKGFTVHQLVKGKIMSVDLDTNQISINLKKSVLLGTAKKTIADYKD---GEFVD 1309

Query: 1474 GQIKRVESYGLFITIENTNLV 1494
            G +++V  YG FI I+ ++ V
Sbjct: 1310 GHVRKVTEYGCFIVIDGSDNV 1330



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 151/352 (42%), Gaps = 17/352 (4%)

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG +V  ++   +  G+++         V   H+ +     + +  + +   V  RIL V
Sbjct: 542 PGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIV-LQHPEKKFREGAAVKGRILRV 600

Query: 381 DPTSRAVGLTLNPYLLHNRAP--PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
           D  SR + +TL   ++++  P    ++ V +  +    +      G +L+          
Sbjct: 601 DTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFYG---EVRG 657

Query: 439 YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LATGILKASAFEGLVFTHSD 495
           ++ +S+++E  ++   + +K G  + V ++    +E    L+    +A + +       +
Sbjct: 658 FLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSSKEKAEALQN 717

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK---PGKKFKVGAELVFR 552
           +  G +V+G +I   +   ++    G+K L  L  +++    K     KK + G +LV  
Sbjct: 718 IALGSIVEGSIIEKSNDDVVLSLQDGIKGLIVLGQLTDGSKEKNLATFKKLRAGQKLVDL 777

Query: 553 VLGVKSKR---ITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           V+  K +    + ++ K +LVK+  +  ++ S+ +        G++ +I   G FV F +
Sbjct: 778 VVLRKDEMRNIVYLSSKPSLVKASKSDTLIKSFLDVKIGSAVAGFVKEITHFGVFVAFID 837

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G+    PR  L  +    P   YH  Q + C +   IP+  +  LS   +PT
Sbjct: 838 GITALLPRKALPKEVEDLPDFGYHRLQSITCYVTDIIPSREQFTLSLRPQPT 889



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 120/274 (43%), Gaps = 40/274 (14%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGY 722
           VK G +V G +       ++V V  +G  +  +P  H++D    H E      + +K   
Sbjct: 540 VKPGDVVKGKISRFVGGGMLVEV-EEGL-EAYVPEMHMSDIVLQHPEKKFREGAAVK--- 594

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              ++L +D +S  + ++ K +++NS   + +D   +  +    G +  ++ TG  + F 
Sbjct: 595 --GRILRVDTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFY 652

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
           G + GF P S+  +    D  + + VGQ++  +++  +    ++ LS + S   S+    
Sbjct: 653 GEVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSS---- 708

Query: 843 MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 902
                  +EK   LQ+               +GS++EG + E ++  VV+S ++   + G
Sbjct: 709 -------KEKAEALQN-------------IALGSIVEGSIIEKSNDDVVLSLQDG--IKG 746

Query: 903 FITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
            I   QL   + E      A    +   ++LVDL
Sbjct: 747 LIVLGQLTDGSKEKN---LATFKKLRAGQKLVDL 777



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 106/223 (47%), Gaps = 37/223 (16%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  GD+V G+IS+ + G  G++V++   L   V    + +I +  P     E +F     
Sbjct: 540  VKPGDVVKGKISRFVGG--GMLVEVEEGLEAYVPEMHMSDIVLQHP-----EKKFR---- 588

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL---DGMSSTNSSDLSTDVDTPGKHLEKI 1373
              EG  VK ++L +    R    ++++L+ ++   +G    +  D+  D +TPG     I
Sbjct: 589  --EGAAVKGRILRVDTDSR---RIKMTLKKAIVNSEGPVFADYIDVEEDEETPGT----I 639

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
              L P              G  +    ++   + +S +S+ +++ P + F +G+ +   V
Sbjct: 640  VKLMPT-------------GAILEFYGEVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHV 686

Query: 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
            +S +P+ K+V ++ ++S +  +S+ +   L N+ +G IV G I
Sbjct: 687  ISSDPMEKKVRLSCRSSQA-DSSKEKAEALQNIALGSIVEGSI 728



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            ++ED+ P  +V+G +      G  + +   L+A V   ++SD  ++ PEK+F  G  V G
Sbjct: 536  RMEDVKPGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIVLQHPEKKFREGAAVKG 595

Query: 1432 RVLSVEPLSKRVEVTLKTS 1450
            R+L V+  S+R+++TLK +
Sbjct: 596  RILRVDTDSRRIKMTLKKA 614



 Score = 48.5 bits (114), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 154/384 (40%), Gaps = 66/384 (17%)

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELSIKPSM 1144
             GR+ + E+++D S  + +L  ++ +G  +   ++     + K D               
Sbjct: 1061 RGRVKLLEISEDVS-ALSDLEKHYPVGTALRVSVLDVNVDTGKLD--------------- 1104

Query: 1145 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA--YEPSE 1202
            LT   +G     +   +  G  +   V K+     ++ +S  +   + + D A  ++ ++
Sbjct: 1105 LTARYLGGNKPLDWSSIKEGMMIPAKVTKISEGKVIVQLSETILGSISLADMADDFDKAD 1164

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1262
            +    + F+    V   VLS++   K +RL  RP +  I D +  + +  +++     D+
Sbjct: 1165 V----KNFNTDSIVRVCVLSVDHSNKKIRLSTRPSR--ILDSSAKVRDVEVKS---AADL 1215

Query: 1263 -VGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
             VGG+    ++ V   G+ + +G     R   ++L            DE   D   G+  
Sbjct: 1216 RVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLS-----------DEFVKDWKKGFTV 1264

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
             Q VK K++ +      T  + ++L+ S+                  G   + I D    
Sbjct: 1265 HQLVKGKIMSVDLD---TNQISINLKKSV----------------LLGTAKKTIADYKDG 1305

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVE-SPEKEFPIGKLVAGRVLSV 1436
              V G+V+ VT  GCFI++    +   L   S +S+   +  P K F  G LV  ++LSV
Sbjct: 1306 EFVDGHVRKVTEYGCFIVIDGSDNVSGLCHKSQMSNEKADVDPSKLFGEGDLVKAKILSV 1365

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEI 1460
            +    R+   LK S  R     E+
Sbjct: 1366 DRKKGRISFGLKASYFRNLPDEEL 1389



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 163/394 (41%), Gaps = 35/394 (8%)

Query: 115  ISGKLPRY---ANKITLK--------NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
            +SGKLP +   A ++T K        ++         V  V +  L + L   +RG  + 
Sbjct: 1007 VSGKLPTFELSAKQVTGKANSLVKYSDLKKEETYLAFVNNVQQDHLWVNLSPSVRGRVKL 1066

Query: 164  ADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
             +     +  ++ A  D  L   + VG  +   VL ++ D       K+ L+ R     K
Sbjct: 1067 LE-----ISEDVSALSD--LEKHYPVGTALRVSVLDVNVDTG-----KLDLTARYLGGNK 1114

Query: 224  GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVK---PGLL 279
             L   +++EGM++ A V  I +   I+     +  G +   ++A++    DVK      +
Sbjct: 1115 PLDWSSIKEGMMIPAKVTKISEGKVIVQLS-ETILGSISLADMADDFDKADVKNFNTDSI 1173

Query: 280  LQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            ++  V S+D + K + LS+ P  +  S    +D++  S   L  G      V ++ +NGV
Sbjct: 1174 VRVCVLSVDHSNKKIRLSTRPSRILDSSAKVRDVEVKSAADLRVGGKYRGFVTNVADNGV 1233

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
             +           I  L + F   +WK  +  H+ V  +I+ VD  +  + + L   +L 
Sbjct: 1234 YIHLGGTAVARARISDLSDEF-VKDWKKGFTVHQLVKGKIMSVDLDTNQISINLKKSVLL 1292

Query: 398  NRAPPS--HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
              A  +    K G+  D       + G  +++D  S  VS   + +     + +V    K
Sbjct: 1293 GTAKKTIADYKDGEFVDGHVRKVTEYGCFIVID-GSDNVSGLCHKSQMSNEKADVDP-SK 1350

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 489
             + EG  V+ +IL     +G  +  LKAS F  L
Sbjct: 1351 LFGEGDLVKAKILSVDRKKGRISFGLKASYFRNL 1384



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 93/498 (18%), Positives = 192/498 (38%), Gaps = 81/498 (16%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKK------ 542
            + T  D++   + KG++ A+      +     VK    +     +++ +K  K       
Sbjct: 919  ISTIEDLERADITKGRITAIKPTQINIDLADNVKGRVDVSEFFKDWDSIKNKKHPLLRQG 978

Query: 543  FKVGAELVFRVLG---VKS-KRITVTHKKT-----------LVKSKLAILSSYAEATDRL 587
              VG E+  +V+G   VKS K + ++H+ +            V  K   L  Y++     
Sbjct: 979  LAVGQEIDVKVIGIHDVKSHKYLPISHRVSGKLPTFELSAKQVTGKANSLVKYSDLKKEE 1038

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIP 645
                ++  +++   +V     V+G     E+  D     +    Y VG  ++  ++    
Sbjct: 1039 TYLAFVNNVQQDHLWVNLSPSVRGRVKLLEISEDVSALSDLEKHYPVGTALRVSVLDVNV 1098

Query: 646  ASRRINLSFMM----KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
             + +++L+       KP   S    +K G ++   V  ++   V+V +       G+I  
Sbjct: 1099 DTGKLDLTARYLGGNKPLDWSS---IKEGMMIPAKVTKISEGKVIVQLSETIL--GSISL 1153

Query: 702  EHLADHLEHATV----MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-- 755
              +AD  + A V      S+++       +L +D+ +  + LS + S I  +     D  
Sbjct: 1154 ADMADDFDKADVKNFNTDSIVRVC-----VLSVDHSNKKIRLSTRPSRILDSSAKVRDVE 1208

Query: 756  ---ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
               A+ +       G+V N+ + G ++   G     A  S   D    D  K + V Q V
Sbjct: 1209 VKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSDEFVKDWKKGFTVHQLV 1268

Query: 813  RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
            +  I+ V+ +T +I+++LK+S              LL             G+  K +  +
Sbjct: 1269 KGKIMSVDLDTNQISINLKKSV-------------LL-------------GTAKKTIADY 1302

Query: 873  IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAI 924
              G  ++G V +  ++G  +  +   +V G     Q++    +         G +++A I
Sbjct: 1303 KDGEFVDGHVRKVTEYGCFIVIDGSDNVSGLCHKSQMSNEKADVDPSKLFGEGDLVKAKI 1362

Query: 925  LDVAKAERLVDLSLKTVF 942
            L V + +  +   LK  +
Sbjct: 1363 LSVDRKKGRISFGLKASY 1380



 Score = 45.1 bits (105), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 103/500 (20%), Positives = 207/500 (41%), Gaps = 88/500 (17%)

Query: 1012 QKQFLNGQSVIATVMA-LPSSST---AGRLLLLLKAISETETSSSKRAKKKSSYDVGSL- 1066
            Q ++  G  +   ++A +P S     AG LL  +K +   +T S K A  K    +G++ 
Sbjct: 399  QTKYKAGNHLTVRLLASIPGSDNKKFAGSLLTHVKEMG-PQTQSGKLALSK--LPIGAIK 455

Query: 1067 VQAEITEIKP-LELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSN--FKIGQTVTARII 1122
              A +  I P + L L  G+G     +HI+ ++D K   ++++ +   +K+G     RI+
Sbjct: 456  SDAAVKHIIPGVGLILNIGLGNTMVFVHISRISDKK---IDSILTTGPYKVGSKHAIRIL 512

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
              ++        L   S++P +L      S+      DV  G  V G + +      L+ 
Sbjct: 513  DYNSM-----DGLLLASMEPKIL------SQRYLRMEDVKPGDVVKGKISRFVGGGMLVE 561

Query: 1183 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1242
            +   L+A  ++ +       LQ  +++F  G AV G +L ++ + + +++ L+     I 
Sbjct: 562  VEEGLEA--YVPEMHMSDIVLQHPEKKFREGAAVKGRILRVDTDSRRIKMTLKK---AIV 616

Query: 1243 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1302
            +    +  D +   + E +   G I K++    G +++    + G +  +E+    + DP
Sbjct: 617  NSEGPVFADYID--VEEDEETPGTIVKLMPT--GAILEFYGEVRGFLPVSEMSEAFIKDP 672

Query: 1303 LSGYDEGQF--------DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
            +  +  GQ         DP+                         V LS RSS       
Sbjct: 673  MEHFKVGQTLNVHVISSDPMEK----------------------KVRLSCRSS------- 703

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
                     D+  +  E +++++   IV+G +   ++    + L   +   ++L  L+DG
Sbjct: 704  -------QADSSKEKAEALQNIALGSIVEGSIIEKSNDDVVLSLQDGIKGLIVLGQLTDG 756

Query: 1415 YVESPEKEFPIGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTA-SQSEINNLSNLH 1467
              E     F   KL AG+      VL  + +   V ++ K S  + + S + I +  ++ 
Sbjct: 757  SKEKNLATFK--KLRAGQKLVDLVVLRKDEMRNIVYLSSKPSLVKASKSDTLIKSFLDVK 814

Query: 1468 VGDIVIGQIKRVESYGLFIT 1487
            +G  V G +K +  +G+F+ 
Sbjct: 815  IGSAVAGFVKEITHFGVFVA 834


>gi|400596283|gb|EJP64059.1| S1 RNA binding domain-containing protein [Beauveria bassiana ARSEF
            2860]
          Length = 1796

 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 346/1424 (24%), Positives = 602/1424 (42%), Gaps = 131/1424 (9%)

Query: 11   KSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEI 70
            KS+K   + N    ++ K  K +  DA +   +++  D++ P+FPRGG   LT  E+ +I
Sbjct: 17   KSAKQSKEANPTKTDKPKTGKPKDADAPKKAVVSVLKDEE-PLFPRGGASVLTPLEQKQI 75

Query: 71   HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKN 130
              E  A+  A E       K +KKK    A +  D       +  S K+      +  K 
Sbjct: 76   QLEAKAD-AAQEDEFSTAGKPQKKKKRAAALQKSDKKSESKSEDDSVKI----ESLNFKK 130

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLL------- 183
            +  G  + G +  ++   L + LP  L G      A+   L N ++ +  +         
Sbjct: 131  LVKGSIVLGQITRISNLALEVALPNNLTGHVSIV-AVSEQLTNRLQGDVKDDDSDDEEKE 189

Query: 184  ----------PTIFHVGQLVSCIVLQLDDDK-KEIGKRKIWLSLRLSLLYKGLSLETVQE 232
                       TIF +GQ V   V+   +      GKRKI LSLR +    GL+ + V  
Sbjct: 190  DDDEGEDVDPKTIFEIGQFVRAYVVSTTEGAVAGKGKRKIELSLRPTEANTGLTKDDVVP 249

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTR 291
               + A V S+EDHG I+  G+   +GFLP   +  N     ++ G +    V +   + 
Sbjct: 250  QCTVVAAVASVEDHGCIMDLGIDGLSGFLPNAEVDTNMKRQRLQEGAVFLCQVTAKKGSG 309

Query: 292  KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 351
            KV  L+   D +        +  +I+  +PG  VS  V     +G+    + +   T D+
Sbjct: 310  KVAQLTLKQDKIGNVKNYPAEATTINTFLPGTAVSVLVTGNSNSGLSGKIMGHVDATADL 369

Query: 352  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL-----HNRAP--- 401
             H       T+ ++ Y    K+ ARI+   PT+++  +G+TL P+L      H   P   
Sbjct: 370  IHSGIGPFGTDVESKYKIGSKIKARIICNFPTAKSPKLGITLLPHLTALTKKHPEGPKRS 429

Query: 402  --PSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-- 456
              P  V  +  I +Q  V   +  +GL +D+    +    +V IS V + +V  L K   
Sbjct: 430  SLPLQVLPIASIVEQCTVRHAEADMGLFVDVGVPGLC--GFVHISRVKDGKVDSLYKSSG 487

Query: 457  -YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDS 511
             Y+ GS  + RI+G+  ++G+     + S        H DV  G V+  ++    I  D 
Sbjct: 488  PYQVGSTHKGRIVGYSEIDGVFHLSFQKSILSQTYIRHEDVPVGTVLTCEIEKLLINEDG 547

Query: 512  F-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKT 568
              G ++    G+    P  H+S+ ++  P KKF+ G ++  RVL   +  K I +T KKT
Sbjct: 548  VNGLVLNIAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKSIRLTLKKT 607

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV S+  I+++Y +        G I K+E+ G  ++FY  ++GF P SE+      +PS 
Sbjct: 608  LVNSETPIITNYDDVKVGSQALGTIIKLERSGARIQFYGELRGFLPISEMSEAYIRDPSE 667

Query: 629  MYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTP 682
             + VGQVV   ++   P SRR+ +S      F ++     +   + LG +VS  V   T 
Sbjct: 668  HFRVGQVVSVHVLDVDPESRRLVVSCKDPGAFGLEKQNALKK--LSLGDVVSAKVTQKTE 725

Query: 683  NAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESS--NLL 738
            + V V  +     K  +P  HL D    ++   +K V   G     L+VLD      +++
Sbjct: 726  DQVFVE-LEGSLLKAILPVGHLTDKSASKNQFALKKV-SAGQTLPNLVVLDKHEGRRSVI 783

Query: 739  LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            LS K SL+ +A++  L          SV  G+V NI  T  FV+F G L    P+++   
Sbjct: 784  LSQKPSLVEAAKEGKLLKSFEQAKQGSVFAGFVRNITLTAVFVQFAGSLHALLPKARLAP 843

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC-SSTDASFMQEHFLLEEKIAM 855
              +A      +   S+   ++    +  RI ++   +           +      + +A 
Sbjct: 844  EAQAKPDFGLHKNDSIEVRVVSTIPDLSRIMVAPSSAPVDQDVAGKSKKAKAAPADDLAF 903

Query: 856  LQSSKHNGSELKWVE--GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
               +K   + +K  +    I+   ++G++  SN F          D +  I   +   AT
Sbjct: 904  GSITKAKVTSIKETQLNVQIVDYNVQGRIDISNVF----------DKWDDIADPKHPLAT 953

Query: 914  VESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGV 970
               G  ++  ++ V  AK  R + +S ++       E  + +   +  R +E + D L V
Sbjct: 954  FHKGQELRVRVVGVHDAKDHRFLPISHRSAH--SILELTARQTDLETDRLKELTVDSLKV 1011

Query: 971  HQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMAL 1028
             Q+  A V  + + YL ++L P     I     SD  +Q    +  F  G ++   V ++
Sbjct: 1012 GQSHIAFVNNLTQQYLWVNLSPSVRGRISALEASDDLSQLNDLEGNFPAGSALRVRVTSV 1071

Query: 1029 -PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
             P +S      L L A     +SSSK      S     ++  +IT++   ++ +KF    
Sbjct: 1072 NPENSH-----LDLSA----RSSSSKDTVTWDSIKANMVLPGKITKVNERQILVKFSESV 1122

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFLWELSIKPS-- 1143
             G +H+ ++ D   N  E   + ++ G  +   +  + KSNK          LSI+PS  
Sbjct: 1123 SGPVHLPDMAD---NFDEVNTTQYRKGGIIRVSVVDVDKSNK-------RLRLSIRPSRI 1172

Query: 1144 MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
            M +   I  + +     +S G  V G+V  V ++   + +   + A + I  S      L
Sbjct: 1173 MSSTLPIKDQEISSFAQLSSGDIVRGFVKNVTDKGLFVLLGGPVSALVKI--SNLSDRYL 1230

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
            +E++ +F I + V G +++I+   K L + L+     + D+  D +       +  G +V
Sbjct: 1231 KEWKDQFQIDQMVKGRIIAIDNATKQLEMSLK---SSVVDE--DYTPPVTYKDLAVGQVV 1285

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G++ K+      ++V    ++ G  H +++    V            D    Y EG  V
Sbjct: 1286 TGKVRKVEEFGAFILVDNSANVSGLCHRSQIAEKPVQ-----------DATKLYKEGDAV 1334

Query: 1324 KCKVLEISRTVRG-TFHVELSLRSSLD-GMSSTNSSDLSTDVDT 1365
            K  VLE+    R  +F ++ SL    D  M S N + L    D+
Sbjct: 1335 KAMVLEVDVQKRKISFGLKPSLFEDEDTDMESDNGAALDGQDDS 1378



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 208/905 (22%), Positives = 410/905 (45%), Gaps = 126/905 (13%)

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVT 681
            S  Y VG   K RI+         +LSF   ++  T +  +D V +G++++  ++  ++ 
Sbjct: 486  SGPYQVGSTHKGRIVGYSEIDGVFHLSFQKSILSQTYIRHED-VPVGTVLTCEIEKLLIN 544

Query: 682  PNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLL-----VLDNE 733
             + V  +V  IA+G + G +P  HL+D  L+H         P  +F Q +     VL N+
Sbjct: 545  EDGVNGLVLNIAEGIT-GFVPERHLSDVKLQH---------PEKKFRQGMKIKARVLSND 594

Query: 734  --SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
                ++ L+ K +L+NS   + ++   +   S   G +  +  +G  ++F G L GF P 
Sbjct: 595  LIKKSIRLTLKKTLVNSETPIITNYDDVKVGSQALGTIIKLERSGARIQFYGELRGFLPI 654

Query: 792  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 851
            S+  +    D S+ + VGQ V  ++LDV+ E+ R+ +S K               F LE+
Sbjct: 655  SEMSEAYIRDPSEHFRVGQVVSVHVLDVDPESRRLVVSCKDPGA-----------FGLEK 703

Query: 852  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE----EHSDVYGFIT-- 905
            + A+ + S              +G V+  KV +  +  V V  E    +     G +T  
Sbjct: 704  QNALKKLS--------------LGDVVSAKVTQKTEDQVFVELEGSLLKAILPVGHLTDK 749

Query: 906  ---HHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRK 961
                +Q A   V +G  +    +LD  +  R V LS K   ++  +E    +  ++ K  
Sbjct: 750  SASKNQFALKKVSAGQTLPNLVVLDKHEGRRSVILSQKPSLVEAAKEGKLLKSFEQAK-- 807

Query: 962  REASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 1020
             + S   G  + +      V+    L   LP+   +    +  D+   K    +     +
Sbjct: 808  -QGSVFAGFVRNITLTAVFVQFAGSLHALLPKARLAPEAQAKPDFGLHKNDSIEVRVVST 866

Query: 1021 V--IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 1078
            +  ++ +M  PSS+   + +           S   +A        GS+ +A++T IK  +
Sbjct: 867  IPDLSRIMVAPSSAPVDQDV--------AGKSKKAKAAPADDLAFGSITKAKVTSIKETQ 918

Query: 1079 LRLKF-GIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            L ++       GRI I+ V D   ++ +  +  + F  GQ +  R++   +  D +  FL
Sbjct: 919  LNVQIVDYNVQGRIDISNVFDKWDDIADPKHPLATFHKGQELRVRVVGVHDAKDHR--FL 976

Query: 1136 WELSIKPSMLTVSEIGSKLLFEECD---------VSIGQRVTGYVYKVDNEWALLTISRH 1186
              +S + S  ++ E+ ++    E D         + +GQ    +V  +  ++  + +S  
Sbjct: 977  -PISHR-SAHSILELTARQTDLETDRLKELTVDSLKVGQSHIAFVNNLTQQYLWVNLSPS 1034

Query: 1187 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            ++ ++  L+++ + S+L + +  F  G A+   V S+N E   L L  R      S    
Sbjct: 1035 VRGRISALEASDDLSQLNDLEGNFPAGSALRVRVTSVNPENSHLDLSARS-----SSSKD 1089

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
             ++ D+++  +    ++ G+I+K+      ++V+    + G VH  ++ +         +
Sbjct: 1090 TVTWDSIKANM----VLPGKITKV--NERQILVKFSESVSGPVHLPDMAD--------NF 1135

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
            DE      + Y +G  ++  V+++ ++ +    + LS+R S   MSST        +   
Sbjct: 1136 DEVN---TTQYRKGGIIRVSVVDVDKSNK---RLRLSIRPSRI-MSST--------LPIK 1180

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             + +     LS   IV+G+VKNVT KG F++L   + A V +SNLSD Y++  + +F I 
Sbjct: 1181 DQEISSFAQLSSGDIVRGFVKNVTDKGLFVLLGGPVSALVKISNLSDRYLKEWKDQFQID 1240

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            ++V GR+++++  +K++E++LK+S         +    +L VG +V G++++VE +G FI
Sbjct: 1241 QMVKGRIIAIDNATKQLEMSLKSSVVDEDYTPPV-TYKDLAVGQVVTGKVRKVEEFGAFI 1299

Query: 1487 TIENT 1491
             ++N+
Sbjct: 1300 LVDNS 1304



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 234/1075 (21%), Positives = 398/1075 (37%), Gaps = 177/1075 (16%)

Query: 453  LEKKYKEGSCVRVRIL-GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
            +E KYK GS ++ RI+  F   +    GI        L   H +      +  +V+ + S
Sbjct: 381  VESKYKIGSKIKARIICNFPTAKSPKLGITLLPHLTALTKKHPEGPKRSSLPLQVLPIAS 440

Query: 512  -------------FGAIVQFPGGVKALCPLPHMSEFE------IVKPGKKFKVGAELVFR 552
                          G  V    GV  LC   H+S  +      + K    ++VG+    R
Sbjct: 441  IVEQCTVRHAEADMGLFVDV--GVPGLCGFVHISRVKDGKVDSLYKSSGPYQVGSTHKGR 498

Query: 553  VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK--------HGCFVR 604
            ++G  S+   V H   L   K  +  +Y    D  +      +IEK        +G  + 
Sbjct: 499  IVGY-SEIDGVFH---LSFQKSILSQTYIRHEDVPVGTVLTCEIEKLLINEDGVNGLVLN 554

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
               G+ GF P   L       P   +  G  +K R++S+    + I L+  +K T V+ +
Sbjct: 555  IAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKSIRLT--LKKTLVNSE 612

Query: 665  -------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-----DHLEHAT 712
                   D VK+GS   G +  +  +   +     G  +G +P   ++     D  EH  
Sbjct: 613  TPIITNYDDVKVGSQALGTIIKLERSGARIQFY--GELRGFLPISEMSEAYIRDPSEHFR 670

Query: 713  VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772
            V + V         +L +D ES  L++S K       ++  +    +    VV   V   
Sbjct: 671  VGQVVSV------HVLDVDPESRRLVVSCKDPGAFGLEK-QNALKKLSLGDVVSAKVTQK 723

Query: 773  IETGCFVRFLGRL------TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
             E   FV   G L       G      A   Q A   K    GQ++  N++ ++   GR 
Sbjct: 724  TEDQVFVELEGSLLKAILPVGHLTDKSASKNQFA--LKKVSAGQTL-PNLVVLDKHEGRR 780

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
            ++                   +L +K ++++++K  G  LK  E    GSV  G V    
Sbjct: 781  SV-------------------ILSQKPSLVEAAKE-GKLLKSFEQAKQGSVFAGFVRNIT 820

Query: 887  DFGVVVSFEEHSDVYGFITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
               V V F     ++  +   +LA          + +   ++V     + DLS + +   
Sbjct: 821  LTAVFVQFA--GSLHALLPKARLAPEAQAKPDFGLHKNDSIEVRVVSTIPDLS-RIMVAP 877

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN--HSIGYASV 1002
                 + +   + KK K   + DL       A V  +KE  L + + +YN    I  ++V
Sbjct: 878  SSAPVDQDVAGKSKKAKAAPADDLAFGSITKAKVTSIKETQLNVQIVDYNVQGRIDISNV 937

Query: 1003 ----SDYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTAGRLLLLLKAISETET 1049
                 D    K P   F  GQ +   V+          LP S  +   +L L A      
Sbjct: 938  FDKWDDIADPKHPLATFHKGQELRVRVVGVHDAKDHRFLPISHRSAHSILELTARQTDLE 997

Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
            +   +     S  VG    A +  +    L +       GRI   E +DD S +  +L  
Sbjct: 998  TDRLKELTVDSLKVGQSHIAFVNNLTQQYLWVNLSPSVRGRISALEASDDLSQL-NDLEG 1056

Query: 1110 NFKIGQTVTARIIA----------KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC 1159
            NF  G  +  R+ +           +     K +  W+ SIK +M+              
Sbjct: 1057 NFPAGSALRVRVTSVNPENSHLDLSARSSSSKDTVTWD-SIKANMV-------------- 1101

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
                   + G + KV+    L+  S  +   + + D A    E+   Q R   G  +   
Sbjct: 1102 -------LPGKITKVNERQILVKFSESVSGPVHLPDMADNFDEVNTTQYR--KGGIIRVS 1152

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1277
            V+ ++K  K LRL +RP +  I   T+ I +  + +F  +  GDIV G +  +     GL
Sbjct: 1153 VVDVDKSNKRLRLSIRPSR--IMSSTLPIKDQEISSFAQLSSGDIVRGFVKNVTDK--GL 1208

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
             V +G  +   V  + L +  + +     D+ Q D        Q VK +++ I      T
Sbjct: 1209 FVLLGGPVSALVKISNLSDRYLKE---WKDQFQID--------QMVKGRIIAIDN---AT 1254

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
              +E+SL+SS+          +  D   P  +    +DL+   +V G V+ V   G FI+
Sbjct: 1255 KQLEMSLKSSV----------VDEDYTPPVTY----KDLAVGQVVTGKVRKVEEFGAFIL 1300

Query: 1398 LSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            +    +   L   S +++  V+   K +  G  V   VL V+   +++   LK S
Sbjct: 1301 VDNSANVSGLCHRSQIAEKPVQDATKLYKEGDAVKAMVLEVDVQKRKISFGLKPS 1355


>gi|367027696|ref|XP_003663132.1| hypothetical protein MYCTH_2304622 [Myceliophthora thermophila ATCC
            42464]
 gi|347010401|gb|AEO57887.1| hypothetical protein MYCTH_2304622 [Myceliophthora thermophila ATCC
            42464]
          Length = 1818

 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 341/1436 (23%), Positives = 594/1436 (41%), Gaps = 222/1436 (15%)

Query: 8    SQKKSSKDGPKFNKASKNQFKNSKKQIND----AVEAQDLALPP--------DDDVPVFP 55
            S  KS++  P+   + + +   S K  +D    A E++  A PP         ++ P+FP
Sbjct: 14   SASKSNRAAPESRPSKRAKASESAKAKDDSNKGAKESKPPAKPPATTVISKPKEEEPLFP 73

Query: 56   RGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            RGGG  LT  E+ +I   A  D  FE            KKK+ + + + TV        D
Sbjct: 74   RGGGSVLTPLEQKQISIQARKDVLFEEQSESKKGDKAAKKKRRKSQVDATV---AKATKD 130

Query: 114  GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPI 170
              + K+      +  K +  G  + G V  +N  D+ + LP  L G   +   +++L   
Sbjct: 131  EDAVKV----ESLNFKRLVKGSLVLGTVCAINPLDIAVALPNNLVGHVPITSISESLTQR 186

Query: 171  LDNEI----------------------EANEDNLLPTIFHVGQLVSCIVLQ-LDDDKKEI 207
            L                             +D  L  +F++GQ V   V   LD+     
Sbjct: 187  LQESAEKEEAEEEEEEEEEEEGGGSGERGADDVDLNGLFYIGQYVRAYVTSTLDESTPGK 246

Query: 208  GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNN 265
             KR I LSL  +    G+S + + E   L A V SIEDHG++++ G+      GFLPR  
Sbjct: 247  SKRHIGLSLEPAHANTGMSEQDLVENSTLMASVASIEDHGFVMNIGIADSDVKGFLPRKQ 306

Query: 266  LAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMM 324
            L ++    +++PG +L  +V     + KVV LS+  D +        +  +I   +PG  
Sbjct: 307  LDKSIPPENLQPGSVLLCIVTGRAASGKVVQLSTLSDRLGNPKHNPAEATTIGSFLPGAA 366

Query: 325  VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
                V  + ++GV+   + +   T D+ H        +  N Y    ++ ARI+   P +
Sbjct: 367  ADVLVSEVSQHGVIGKVMGHLDVTADLVHSGAGPDGVDIVNQYKVGSRLKARIICTFPNA 426

Query: 385  R--AVGLTLNPYLLHNRA-----------PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            +   +G++L P+++  +            P + +    I ++  V +V+ G+GL +D+  
Sbjct: 427  KLPKLGISLLPHVVSLKPKIANKDGQELLPTAILAHSAIVNECTVRKVEPGIGLYVDVGV 486

Query: 432  TPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
              V  P +V IS V + +V  L      YK GS    R++G+ + +G+     +    E 
Sbjct: 487  EGV--PGFVHISRVKDGKVDTLFENSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKKVLEQ 544

Query: 489  LVFTHSDVKPGMVVKGKV----IAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
                  D+  G VV G V    I  D  G  IV    G+  L P  H+++  +  P KKF
Sbjct: 545  PFLRIEDIPIGAVVPGVVEKLVINQDGLGGLIVNIAQGISGLVPEMHLADVHLQHPEKKF 604

Query: 544  KVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
            + G ++  RVL       ++ +T KKTLV S+   + SY E    L   G I  + +HG 
Sbjct: 605  REGMKVKARVLSTNPAMHQLRLTLKKTLVNSEAPAIKSYDELAVGLQAPGTIVNVLQHGA 664

Query: 602  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
             V+FY  ++GF P SE+      +P   + VGQ V   ++S  P +RR+ +S        
Sbjct: 665  IVQFYGQLRGFLPVSEMSEAYISDPKEHFRVGQTVSIYVLSFDPETRRLIVSCKDPSAFG 724

Query: 662  SEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
             E  L    +++G LVS  V   T + V V +      K  +P  HL D  +  +  +S 
Sbjct: 725  LEKQLALKKLQIGDLVSAKVTQKTEDDVFVELTDSSL-KAILPVGHLTD--KSVSKTQSA 781

Query: 718  IKP---GYEFDQLLVLD-NES-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVC 770
            +K          L+VL+ NE+  +++LS K SL+ ++++  L            V G+V 
Sbjct: 782  LKKIHVNQTLSDLVVLEKNEARRSIILSHKPSLVQASKEGKLLRSVDDARLGDTVAGFVR 841

Query: 771  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            NI  T  FV+F G LT   P++K     +  L+   +  QS+   I  ++ + GR+ +++
Sbjct: 842  NITATAAFVQFAGNLTALLPKTKLPKDAQDKLNFGLFKSQSLAVKITSIDRDLGRLLVAI 901

Query: 831  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
                 S +D    +     +  +  L  S  +  +LK      IG + + +V    +  +
Sbjct: 902  P----SVSDEEARKSSKPADRAVNALDDSVSSMDDLK------IGKITKARVKSVKETQL 951

Query: 891  VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V   +  +V G I   Q+                                  D++ +  
Sbjct: 952  NVQIAD--NVQGRIDVSQI---------------------------------FDKWEDIP 976

Query: 951  SNRQAQKKKRKRE--ASKDLGVHQTVN-AIVEIV-KENYLVLSLPEYNHSIGYASVSDYN 1006
             +R+  K+ ++ +   ++ LG+H   N   + I  + ++ VL L         A  SD  
Sbjct: 977  DSRRPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLEL--------SAKPSDLK 1028

Query: 1007 TQKFPQKQFLN----GQSVIATVMALPSSSTAGRLLLLLKA-ISETETSS--SKRAKKKS 1059
                P+   L+    G S IA V  + SS     L   ++  IS  E S   SK A  + 
Sbjct: 1029 PDTLPEPLSLDKIEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEK 1088

Query: 1060 SYDVGSLVQAEI--------------------------------------TEIKPLELRL 1081
            S+ VGS +Q  +                                      T+I   ++ +
Sbjct: 1089 SFPVGSALQVRVLSVDKEKQRVDLSARAPGEAAQLSWDKIQQGLVLPAKVTKINDRQVVV 1148

Query: 1082 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI-IAKSNKPDMKKSFLWELSI 1140
            K      G +H+ ++ DD      N  S+ K      A + + KSNK          LS+
Sbjct: 1149 KLSELVAGPVHLADLADDYDEA--NPLSHSKNEIVRVAVVEVDKSNK-------RLRLSM 1199

Query: 1141 KPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI--LDS 1196
            +PS +  S   +  K + +   + +G  + G+V  V ++   +++   + A + I  L  
Sbjct: 1200 RPSRVLNSSLPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVSLGGDVVAHVKIKNLSD 1259

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF---QDGISDKTVDISNDNM 1253
            AY    L++++  F + + V G ++S+   +  + + L+P    QD +   T+       
Sbjct: 1260 AY----LKDWKEHFQVDQLVKGRIISVADGR--IEMDLKPSVVEQDYVPPITI------- 1306

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
               + EG IV G++ K+      + +    +L G  H +E+ +  V D  + Y+EG
Sbjct: 1307 -ADLREGQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNEG 1361



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 244/1054 (23%), Positives = 456/1054 (43%), Gaps = 150/1054 (14%)

Query: 488  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG----VKALCPLPHMSEFEIVKPGKKF 543
            G V  H DV   +V  G     D    + Q+  G     + +C  P+          K  
Sbjct: 381  GKVMGHLDVTADLVHSG--AGPDGVDIVNQYKVGSRLKARIICTFPN---------AKLP 429

Query: 544  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
            K+G  L+  V+ +K K      ++ L  + LA  +   E T R +  G        G +V
Sbjct: 430  KLGISLLPHVVSLKPKIANKDGQELLPTAILAHSAIVNECTVRKVEPGI-------GLYV 482

Query: 604  RF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----M 655
                 GV GF   S +    +D   E S  Y VG V   R++          LSF    +
Sbjct: 483  DVGVEGVPGFVHISRVKDGKVDTLFENSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKKVL 542

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPN----AVVVYVIAKGYSKGTIPTEHLAD-HLEH 710
             +P    ED  + +G++V GVV+ +  N      ++  IA+G S G +P  HLAD HL+H
Sbjct: 543  EQPFLRIED--IPIGAVVPGVVEKLVINQDGLGGLIVNIAQGIS-GLVPEMHLADVHLQH 599

Query: 711  ATVMKSVIKPGYEFDQLLVLDNES-SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
                +   + G +    ++  N +   L L+ K +L+NS          +       G +
Sbjct: 600  P---EKKFREGMKVKARVLSTNPAMHQLRLTLKKTLVNSEAPAIKSYDELAVGLQAPGTI 656

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             N+++ G  V+F G+L GF P S+  +   +D  + + VGQ+V   +L  + ET R+ +S
Sbjct: 657  VNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEHFRVGQTVSIYVLSFDPETRRLIVS 716

Query: 830  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
             K               F LE+++A+              +   IG ++  KV +  +  
Sbjct: 717  CKDPSA-----------FGLEKQLAL--------------KKLQIGDLVSAKVTQKTEDD 751

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLK 939
            V V   + S        H    +  ++ S ++            +L+  +A R + LS K
Sbjct: 752  VFVELTDSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSIILSHK 811

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
               +          QA K+ +   +  D  +  TV   V  +      +       ++  
Sbjct: 812  PSLV----------QASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTALLP 861

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK- 1058
             +    + Q          QS+   + ++      GRLL+ + ++S+ E   S +   + 
Sbjct: 862  KTKLPKDAQDKLNFGLFKSQSLAVKITSI--DRDLGRLLVAIPSVSDEEARKSSKPADRA 919

Query: 1059 --------SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
                    SS D   +G + +A +  +K  +L ++      GRI ++++ D   ++ ++ 
Sbjct: 920  VNALDDSVSSMDDLKIGKITKARVKSVKETQLNVQIADNVQGRIDVSQIFDKWEDIPDSR 979

Query: 1108 --FSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFE 1157
                 FK    + AR++    A++++  P   +S   + ELS KPS L    +   L  +
Sbjct: 980  RPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLELSAKPSDLKPDTLPEPLSLD 1039

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
            +  +  G     +V  V + +  + +S +++ ++  ++++ + S+L   ++ F +G A+ 
Sbjct: 1040 K--IEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEKSFPVGSALQ 1097

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              VLS++KEK+ + L  R        +   +S D +Q    +G ++  +++KI      +
Sbjct: 1098 VRVLSVDKEKQRVDLSAR-----APGEAAQLSWDKIQ----QGLVLPAKVTKI--NDRQV 1146

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
            VV++   + G VH  +L +         YDE   +PLS + + + V+  V+E+ ++ +  
Sbjct: 1147 VVKLSELVAGPVHLADLAD--------DYDEA--NPLS-HSKNEIVRVAVVEVDKSNK-- 1193

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
              + LS+R S           L++ +    K + K   L    I++G+VKNV+ KG F+ 
Sbjct: 1194 -RLRLSMRPS---------RVLNSSLPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVS 1243

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
            L   + A V + NLSD Y++  ++ F + +LV GR++SV     R+E+ LK S       
Sbjct: 1244 LGGDVVAHVKIKNLSDAYLKDWKEHFQVDQLVKGRIISVA--DGRIEMDLKPSVVEQDYV 1301

Query: 1458 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
              I  +++L  G IV G++++VE +G F+ I+ +
Sbjct: 1302 PPI-TIADLREGQIVTGKVRKVEEFGAFVDIDGS 1334



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 181/867 (20%), Positives = 325/867 (37%), Gaps = 179/867 (20%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 190
            ++ G++  G +  V +   ++   G LRG    ++  +  + +  E          F VG
Sbjct: 646  LAVGLQAPGTIVNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEH---------FRVG 696

Query: 191  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSL---LYKGLSLETVQEGMVLTAYVKSIEDHG 247
            Q VS  VL  D +      R++ +S +      L K L+L+ +Q G +++A V    +  
Sbjct: 697  QTVSIYVLSFDPET-----RRLIVSCKDPSAFGLEKQLALKKLQIGDLVSAKVTQKTEDD 751

Query: 248  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSD 299
              +     S    LP  +L + S    +  L        L   VV   +  R+ + LS  
Sbjct: 752  VFVELTDSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSIILSHK 811

Query: 300  PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
            P  V    +K+ K + S+D    G  V+  V++I      + F    T            
Sbjct: 812  PSLVQ--ASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTAL---------L 860

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 418
            P T    D     K+N  +      S+++ +                         K+  
Sbjct: 861  PKTKLPKD--AQDKLNFGLF----KSQSLAV-------------------------KITS 889

Query: 419  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
            +DR LG LL            V I  V++EE RK  K                       
Sbjct: 890  IDRDLGRLL------------VAIPSVSDEEARKSSKPADRA------------------ 919

Query: 479  GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIV 537
                 +A +  V +  D+K G + K +V +V      VQ    V+    +  +  ++E +
Sbjct: 920  ----VNALDDSVSSMDDLKIGKITKARVKSVKETQLNVQIADNVQGRIDVSQIFDKWEDI 975

Query: 538  ----KPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLIT 589
                +P K+FK    L  RVLG+   R    + +TH+ +    +L+   S  +  D L  
Sbjct: 976  PDSRRPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLELSAKPSDLKP-DTLPE 1034

Query: 590  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---------------YHVGQ 634
               + KIE    ++ F N V        L  +     S+M               + VG 
Sbjct: 1035 PLSLDKIEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEKSFPVGS 1094

Query: 635  VVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
             ++ R++S     +R++LS    P   ++   D ++ G ++   V  +    VVV +   
Sbjct: 1095 ALQVRVLSVDKEKQRVDLS-ARAPGEAAQLSWDKIQQGLVLPAKVTKINDRQVVVKL--- 1150

Query: 693  GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LINSA 749
              S+      HLAD  +       +     E  ++ V++ + SN  L LS + S ++NS+
Sbjct: 1151 --SELVAGPVHLADLADDYDEANPLSHSKNEIVRVAVVEVDKSNKRLRLSMRPSRVLNSS 1208

Query: 750  QQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
              LP      + ++ +    ++ G+V N+ + G FV   G +          D    D  
Sbjct: 1209 --LPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVSLGGDVVAHVKIKNLSDAYLKDWK 1266

Query: 804  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
            + + V Q V+  I+ V    GRI + LK S         +++ ++    IA L+      
Sbjct: 1267 EHFQVDQLVKGRIISVAD--GRIEMDLKPSV--------VEQDYVPPITIADLRE----- 1311

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------S 916
                       G ++ GKV +  +FG  V  +   ++ G     ++A   V+        
Sbjct: 1312 -----------GQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNE 1360

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFI 943
            G  ++A +L V   ++ V+L LK  + 
Sbjct: 1361 GDRVKARVLKVDLEKKRVNLGLKPSYF 1387



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 183/893 (20%), Positives = 329/893 (36%), Gaps = 123/893 (13%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G  V    G+ G  P   L       P   +  G  VK R++S+ PA  ++ L+  +K T
Sbjct: 574  GLIVNIAQGISGLVPEMHLADVHLQHPEKKFREGMKVKARVLSTNPAMHQLRLT--LKKT 631

Query: 660  RVSED-------DLVKLGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTE-----HLAD 706
             V+ +       D + +G    G +V+V+   A+V +    G  +G +P       +++D
Sbjct: 632  LVNSEAPAIKSYDELAVGLQAPGTIVNVLQHGAIVQFY---GQLRGFLPVSEMSEAYISD 688

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVV 765
              EH  V ++V         +L  D E+  L++S K  S     +QL      I    +V
Sbjct: 689  PKEHFRVGQTVSI------YVLSFDPETRRLIVSCKDPSAFGLEKQLALKKLQI--GDLV 740

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
               V    E   FV                    + L     VG     ++    S   +
Sbjct: 741  SAKVTQKTEDDVFVELTD----------------SSLKAILPVGHLTDKSVSKTQSALKK 784

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            I ++   S     + +  +   +L  K +++Q+SK  G  L+ V+   +G  + G V   
Sbjct: 785  IHVNQTLSDLVVLEKNEARRSIILSHKPSLVQASKE-GKLLRSVDDARLGDTVAGFVRNI 843

Query: 886  NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV----IQAAILDVAKAERLVDLSLKTV 941
                  V F    ++   +   +L     +  +      Q+  + +   +R  DL    V
Sbjct: 844  TATAAFVQFA--GNLTALLPKTKLPKDAQDKLNFGLFKSQSLAVKITSIDR--DLGRLLV 899

Query: 942  FIDRFREANSNRQAQKKKRKREA-------SKDLGVHQTVNAIVEIVKENYLVLSLPE-- 992
             I    +  + + ++   R   A         DL + +   A V+ VKE  L + + +  
Sbjct: 900  AIPSVSDEEARKSSKPADRAVNALDDSVSSMDDLKIGKITKARVKSVKETQLNVQIADNV 959

Query: 993  ---YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTAGRLLLL 1040
                + S  +    D    + P K+F     + A V+          LP +  +   +L 
Sbjct: 960  QGRIDVSQIFDKWEDIPDSRRPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLE 1019

Query: 1041 LKA-ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 1099
            L A  S+ +  +          + GS   A +  +    L +       GRI   E +DD
Sbjct: 1020 LSAKPSDLKPDTLPEPLSLDKIEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDD 1079

Query: 1100 KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC 1159
             S +  NL  +F +G  +  R+++     D +K  +         L+    G        
Sbjct: 1080 LSKLA-NLEKSFPVGSALQVRVLSV----DKEKQRV--------DLSARAPGEAAQLSWD 1126

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
             +  G  +   V K+++   ++ +S  +   + + D A +  E        +  + V   
Sbjct: 1127 KIQQGLVLPAKVTKINDRQVVVKLSELVAGPVHLADLADDYDEANPLSHSKN--EIVRVA 1184

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V+ ++K  K LRL +RP +   S   V        T +  GDI+ G +  +     GL V
Sbjct: 1185 VVEVDKSNKRLRLSMRPSRVLNSSLPVKDKEITKSTKLEVGDIIRGFVKNVSDK--GLFV 1242

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
             +G  +   V    L +  + D    +   Q D        Q VK +++ ++        
Sbjct: 1243 SLGGDVVAHVKIKNLSDAYLKDWKEHF---QVD--------QLVKGRIISVADG-----R 1286

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            +E+ L+ S+          +  D   P      I DL    IV G V+ V   G F+ + 
Sbjct: 1287 IEMDLKPSV----------VEQDYVPP----ITIADLREGQIVTGKVRKVEEFGAFVDID 1332

Query: 1400 RKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
              ++   L   S ++D  V+     +  G  V  RVL V+   KRV + LK S
Sbjct: 1333 GSMNLSGLCHRSEMADRNVKDARTLYNEGDRVKARVLKVDLEKKRVNLGLKPS 1385



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 171/379 (45%), Gaps = 40/379 (10%)

Query: 216  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL----PRNNLAENSG 271
            L+   L + LSL+ ++ G    A+V ++    Y+     P+  G +      ++L++ + 
Sbjct: 1027 LKPDTLPEPLSLDKIEPGSSYIAFVNNVA-SSYLWVNLSPNVRGRISAMEASDDLSKLAN 1085

Query: 272  ID--VKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
            ++     G  LQ  V S+D+ ++ V LS+  P   ++        +S D +  G+++  +
Sbjct: 1086 LEKSFPVGSALQVRVLSVDKEKQRVDLSARAPGEAAQ--------LSWDKIQQGLVLPAK 1137

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
            V  I +  V++       G V +  L + +   N  + +++++ V   ++ VD +++ + 
Sbjct: 1138 VTKINDRQVVVKLSELVAGPVHLADLADDYDEANPLS-HSKNEIVRVAVVEVDKSNKRLR 1196

Query: 389  LTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            L++ P  + N + P         + ++VGDI      V+     GL + +    V   A+
Sbjct: 1197 LSMRPSRVLNSSLPVKDKEITKSTKLEVGDII--RGFVKNVSDKGLFVSLGGDVV---AH 1251

Query: 440  VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDV 496
            V I ++++  ++  ++ ++    V+ RI+     +G     LK S  E       T +D+
Sbjct: 1252 VKIKNLSDAYLKDWKEHFQVDQLVKGRIISV--ADGRIEMDLKPSVVEQDYVPPITIADL 1309

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPGGVK--ALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            + G +V GKV  V+ FGA V   G +    LC    M++  +      +  G  +  RVL
Sbjct: 1310 REGQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNEGDRVKARVL 1369

Query: 555  GV--KSKRITVTHKKTLVK 571
             V  + KR+ +  K +  K
Sbjct: 1370 KVDLEKKRVNLGLKPSYFK 1388


>gi|367050128|ref|XP_003655443.1| hypothetical protein THITE_2119136 [Thielavia terrestris NRRL 8126]
 gi|347002707|gb|AEO69107.1| hypothetical protein THITE_2119136 [Thielavia terrestris NRRL 8126]
          Length = 1818

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 256/902 (28%), Positives = 412/902 (45%), Gaps = 78/902 (8%)

Query: 3   ASSRKSQKKSSKDGP----KFNKASKNQFKNSKKQINDAVEAQDLALPP----DDDVPVF 54
           A++ KS + +++  P    K ++++K+  K   KQ   A  A+ LA P      ++ P+F
Sbjct: 13  AAASKSVRTATEARPAKRAKQSESTKDDGKKGAKQSKPA--AKPLAAPLVTALKEEEPLF 70

Query: 55  PRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
           PRGGG  LT  E+ +I   A+ D  FE    G       KKK+ + +A+ET     +   
Sbjct: 71  PRGGGSVLTPLEQKQISIQAKRDVLFEEESAGKKADKAAKKKRRKSRADETATK-PTKDE 129

Query: 113 DGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL--------------R 158
           D +          +  K +  G  + G V  +N  D+ + LP  L              R
Sbjct: 130 DAVK------VESLNFKRLVKGSLVLGTVCAINPLDIALALPNNLVGHVPITAISETLTR 183

Query: 159 GLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLR 217
            L  +A+  D   ++E E  +D  L ++FH+GQ V   V   LD+      +R I LSL 
Sbjct: 184 RLQASAEKEDDAGESEDENADDVDLKSLFHMGQYVRAYVASTLDESTPGKSRRHIELSLE 243

Query: 218 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID-V 274
            S    G+S + + E   L A V S+EDHG+++  G+   S  GFLPR  L ++   D +
Sbjct: 244 PSHANTGISEQDLVEHCTLMASVVSVEDHGFVMDIGISESSVKGFLPRKQLDKSIPEDSI 303

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
           +PG +L  VV       KVV LS+ PD +        +  +I   +PG      +  + +
Sbjct: 304 QPGSVLLCVVTGKAANGKVVQLSTLPDRLGNPKHTPSEATTIGSFLPGTAADVLISEVSQ 363

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLN 392
           +GV+   + +   T D+ H        +  + Y    +V ARI+   PT++   +G++L 
Sbjct: 364 HGVIGKVMGHLDVTADLVHSGAGPDGVDIVDKYKVGSRVKARIICTFPTAKMPKLGISLL 423

Query: 393 PYLLHNRAPPSHVKVGD------------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
           P++L  R P + ++ G             I DQ  V RV+ G+GL +D+    V  P +V
Sbjct: 424 PHVLSLR-PKTTIQDGQEALPTQILAHSAIVDQCTVQRVEPGIGLYVDVGVQGV--PGFV 480

Query: 441 TISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
            IS V + +V  L      YK GS    R++G+   +G+    L+    E       DV 
Sbjct: 481 HISRVKDGKVDSLFENSGPYKIGSVHPGRVVGYNSFDGMFLLSLEKHVLEQPFLRIEDVP 540

Query: 498 PGMVVKGK----VIAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            G VV G     VI  D  G  IV+   G+  L P  H+++  +  P KKF+ G ++  R
Sbjct: 541 VGAVVPGVVEKLVINQDGLGGLIVRIADGISGLVPEAHLADVHLQHPEKKFREGMKVKAR 600

Query: 553 VLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL       +I +T KKTLV S+   + SY E    L   G I  + +HG  V+FY  ++
Sbjct: 601 VLSTNPAMHQIRLTLKKTLVNSEAPPIKSYDELAVGLQAPGTIVSVLQHGAIVQFYGQLR 660

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 666
           GF P SE+      +P   + VGQ V   ++S  P + R+ +S         E  L    
Sbjct: 661 GFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPDASRLIVSCKDPSAFGLEKQLALKK 720

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYE 723
           +++G LVS  V   T + + V  +A    K  +P  HL D  +  +  +S +K       
Sbjct: 721 LQVGQLVSAKVTQKTEDDIFVE-LADSSLKAILPVGHLTD--KSVSKTQSALKKIHVNQT 777

Query: 724 FDQLLVLD-NES-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFV 779
             +L+VL+ NE   ++ LS K SL+ ++++  L +          V G+V NI  T  FV
Sbjct: 778 LSELVVLEKNEGRRSITLSHKPSLVQASKEGKLLAHIDDARLGDQVPGFVRNITATAAFV 837

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
           +F G+LT   P+S      R   S   +  QS+   I  ++ + GR+ +++  +   +  
Sbjct: 838 QFAGKLTALLPKSMMPSDVRDKPSFGMHKSQSLVVKITSIDKDLGRLVVAIPSAAGEAAK 897

Query: 840 AS 841
            S
Sbjct: 898 TS 899



 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 180/841 (21%), Positives = 369/841 (43%), Gaps = 115/841 (13%)

Query: 686  VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNES-SNLLLSAKY 743
            ++  IA G S G +P  HLAD HL+H    +   + G +    ++  N +   + L+ K 
Sbjct: 562  LIVRIADGIS-GLVPEAHLADVHLQHP---EKKFREGMKVKARVLSTNPAMHQIRLTLKK 617

Query: 744  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
            +L+NS          +       G + ++++ G  V+F G+L GF P S+  +    D  
Sbjct: 618  TLVNSEAPPIKSYDELAVGLQAPGTIVSVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPK 677

Query: 804  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
            + + VGQ+V   +L  + +  R+ +S K               F LE+++A+        
Sbjct: 678  EHFRVGQTVSIYVLSFDPDASRLIVSCKDPSA-----------FGLEKQLAL-------- 718

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI--- 920
                  +   +G ++  KV +  +  + V   + S        H    +  ++ S +   
Sbjct: 719  ------KKLQVGQLVSAKVTQKTEDDIFVELADSSLKAILPVGHLTDKSVSKTQSALKKI 772

Query: 921  -------QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
                   +  +L+  +  R + LS K   +          QA K+ +      D  +   
Sbjct: 773  HVNQTLSELVVLEKNEGRRSITLSHKPSLV----------QASKEGKLLAHIDDARLGDQ 822

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            V   V  +      +       ++   S+   + +  P       QS++  + ++     
Sbjct: 823  VPGFVRNITATAAFVQFAGKLTALLPKSMMPSDVRDKPSFGMHKSQSLVVKITSI--DKD 880

Query: 1034 AGRLLLLL-KAISETETSSSKRAKKK-SSYD----------VGSLVQAEITEIKPLELRL 1081
             GRL++ +  A  E   +S K A+K  +S D          VG L +A +  +K  +L +
Sbjct: 881  LGRLVVAIPSAAGEAAKTSQKNAEKAVNSVDDSIGSIDDLAVGKLTKARVKSVKETQLNV 940

Query: 1082 KFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKS 1133
            +      GRI ++++ D   ++ +       FK G  +  R++    A++++  P   +S
Sbjct: 941  QIADNIQGRIDVSQIFDKWEDIPDPKRPLKRFKAGDILPVRVLGVHDARNHRFLPISHRS 1000

Query: 1134 F--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
               + ELS KPS L    +   L  E+ +         +V  V +    + +S +++ ++
Sbjct: 1001 SHSVLELSTKPSDLKGDAMPEPLTLEKIEPQSTH--LAFVNNVTSSHLWVNLSPNVRGRI 1058

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
               +++ + S++   ++ F +G A+   VL+++ +K+ + L  R      +    ++S D
Sbjct: 1059 KATEASDDLSKVASLEKSFPVGCALQVRVLAVDADKERVDLSAR------TGAAPELSWD 1112

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             +Q    +G ++ G+++K+      + VQ+   + G VH  +L +         YDE   
Sbjct: 1113 KVQ----QGMVLPGKVTKV--NDRQVFVQLSELVAGPVHLVDLAD--------DYDEA-- 1156

Query: 1312 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1371
            +PL+ + + + V+  ++EI ++ +    + LS+R S           L++ +    K + 
Sbjct: 1157 NPLA-HSKNEIVRVAIVEIDKSNK---KLRLSMRPS---------RVLNSSLPVKDKEIT 1203

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            K   L    +V+G+V+NV+ KG F+ L     A V + +LSD Y++  ++ F + +LV G
Sbjct: 1204 KGTKLEVGDVVRGFVRNVSDKGLFVSLGGDAVALVQIKDLSDSYLKDWKEHFQVDQLVKG 1263

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            R++SV     R+ ++LK S        ++  +S+L  G IV G++++VE +G FI I+ +
Sbjct: 1264 RIVSVA--DGRLRMSLKES-VVEKDFVKLTTISDLKEGQIVTGRVRKVEEFGAFIAIDRS 1320

Query: 1492 N 1492
            +
Sbjct: 1321 D 1321



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 177/862 (20%), Positives = 327/862 (37%), Gaps = 170/862 (19%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 190
            ++ G++  G +  V +   ++   G LRG    ++  +  + +  E          F VG
Sbjct: 633  LAVGLQAPGTIVSVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEH---------FRVG 683

Query: 191  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSL---LYKGLSLETVQEGMVLTAYVKSIEDHG 247
            Q VS  VL  D D       ++ +S +      L K L+L+ +Q G +++A V    +  
Sbjct: 684  QTVSIYVLSFDPDAS-----RLIVSCKDPSAFGLEKQLALKKLQVGQLVSAKVTQKTEDD 738

Query: 248  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSD 299
              +     S    LP  +L + S    +  L        L + VV   +  R+ + LS  
Sbjct: 739  IFVELADSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSELVVLEKNEGRRSITLSHK 798

Query: 300  PDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
            P  V    +K+ K ++ ID    G  V   V++I      + F    T  +     ++  
Sbjct: 799  PSLVQ--ASKEGKLLAHIDDARLGDQVPGFVRNITATAAFVQFAGKLTALLP----KSMM 852

Query: 359  PT-TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVV 417
            P+    K  +  HK   ++ L V                                  K+ 
Sbjct: 853  PSDVRDKPSFGMHK---SQSLVV----------------------------------KIT 875

Query: 418  RVDRGLG-LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
             +D+ LG L++ IPS   +  A  T    AE+ V  ++     GS           ++ L
Sbjct: 876  SIDKDLGRLVVAIPSA--AGEAAKTSQKNAEKAVNSVDDSI--GS-----------IDDL 920

Query: 477  ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
            A G L  +  + +  T  +V+    ++G++     F      P               + 
Sbjct: 921  AVGKLTKARVKSVKETQLNVQIADNIQGRIDVSQIFDKWEDIP---------------DP 965

Query: 537  VKPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
             +P K+FK G  L  RVLGV   R    + ++H+ +    +L+   S  +  D +     
Sbjct: 966  KRPLKRFKAGDILPVRVLGVHDARNHRFLPISHRSSHSVLELSTKPSDLKG-DAMPEPLT 1024

Query: 593  ITKIEKHGCFVRFYNGVQ------GFAP------RSELGLDPGCEPSSM---YHVGQVVK 637
            + KIE     + F N V         +P      ++    D   + +S+   + VG  ++
Sbjct: 1025 LEKIEPQSTHLAFVNNVTSSHLWVNLSPNVRGRIKATEASDDLSKVASLEKSFPVGCALQ 1084

Query: 638  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
             R+++      R++LS           D V+ G ++ G V  V  N   V+V       G
Sbjct: 1085 VRVLAVDADKERVDLSARTGAAPELSWDKVQQGMVLPGKVTKV--NDRQVFVQLSELVAG 1142

Query: 698  TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LINSAQQLP- 753
             +    LAD  + A  +        E  ++ +++ + SN  L LS + S ++NS+  LP 
Sbjct: 1143 PVHLVDLADDYDEANPL---AHSKNEIVRVAIVEIDKSNKKLRLSMRPSRVLNSS--LPV 1197

Query: 754  -----SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
                 +  + +    VV G+V N+ + G FV   G            D    D  + + V
Sbjct: 1198 KDKEITKGTKLEVGDVVRGFVRNVSDKGLFVSLGGDAVALVQIKDLSDSYLKDWKEHFQV 1257

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
             Q V+  I+ V    GR+ +SLK+S         +++ F+    I+ L+           
Sbjct: 1258 DQLVKGRIVSVAD--GRLRMSLKESV--------VEKDFVKLTTISDLKE---------- 1297

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQ 921
                  G ++ G+V +  +FG  ++ +   ++ G     ++A   V+        G  ++
Sbjct: 1298 ------GQIVTGRVRKVEEFGAFIAIDRSDNLSGLCHRSEMADRAVKDAKTLYNEGDRVK 1351

Query: 922  AAILDVAKAERLVDLSLKTVFI 943
            A +L V   ++ + L LK  + 
Sbjct: 1352 ARVLKVDLEQKRISLGLKPSYF 1373



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 146/364 (40%), Gaps = 50/364 (13%)

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            GRI  TE +DD S V  +L  +F +G  +  R++A     D  K  + +LS +       
Sbjct: 1056 GRIKATEASDDLSKVA-SLEKSFPVGCALQVRVLAV----DADKERV-DLSAR------- 1102

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
              G+        V  G  + G V KV++    + +S  +   + ++D A +  E      
Sbjct: 1103 -TGAAPELSWDKVQQGMVLPGKVTKVNDRQVFVQLSELVAGPVHLVDLADDYDEANPLAH 1161

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
              +  + V   ++ I+K  K LRL +RP +   S   V        T +  GD+V G + 
Sbjct: 1162 SKN--EIVRVAIVEIDKSNKKLRLSMRPSRVLNSSLPVKDKEITKGTKLEVGDVVRGFVR 1219

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
             +     GL V +G      V   +L +  + D    +   Q D        Q VK +++
Sbjct: 1220 NVSDK--GLFVSLGGDAVALVQIKDLSDSYLKDWKEHF---QVD--------QLVKGRIV 1266

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
             ++        + +SL+ S+              V+     L  I DL    IV G V+ 
Sbjct: 1267 SVADG-----RLRMSLKESV--------------VEKDFVKLTTISDLKEGQIVTGRVRK 1307

Query: 1389 VTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
            V   G FI + R   L      S ++D  V+  +  +  G  V  RVL V+   KR+ + 
Sbjct: 1308 VEEFGAFIAIDRSDNLSGLCHRSEMADRAVKDAKTLYNEGDRVKARVLKVDLEQKRISLG 1367

Query: 1447 LKTS 1450
            LK S
Sbjct: 1368 LKPS 1371



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 30/221 (13%)

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            G+GGL+V+I   + G V    L ++ +  P     E +F       EG  VK +VL    
Sbjct: 558  GLGGLIVRIADGISGLVPEAHLADVHLQHP-----EKKF------REGMKVKARVLS--- 603

Query: 1333 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1392
            T      + L+L+ +L              V++    ++  ++L+  +   G + +V   
Sbjct: 604  TNPAMHQIRLTLKKTL--------------VNSEAPPIKSYDELAVGLQAPGTIVSVLQH 649

Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            G  +    +L   + +S +S+ Y+  P++ F +G+ V+  VLS +P + R+ V+ K  D 
Sbjct: 650  GAIVQFYGQLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPDASRLIVSCK--DP 707

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
                  +   L  L VG +V  ++ +     +F+ + +++L
Sbjct: 708  SAFGLEKQLALKKLQVGQLVSAKVTQKTEDDIFVELADSSL 748



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 138/315 (43%), Gaps = 40/315 (12%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  LQ  V ++D  ++ V LS+      +        +S D +  GM++  +V  + +  
Sbjct: 1080 GCALQVRVLAVDADKERVDLSARTGAAPE--------LSWDKVQQGMVLPGKVTKVNDRQ 1131

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            V +       G V +  L + +   N    +++++ V   I+ +D +++ + L++ P  +
Sbjct: 1132 VFVQLSELVAGPVHLVDLADDYDEAN-PLAHSKNEIVRVAIVEIDKSNKKLRLSMRPSRV 1190

Query: 397  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
             N + P         + ++VGD+      VR     GL + +    V   A V I D+++
Sbjct: 1191 LNSSLPVKDKEITKGTKLEVGDVV--RGFVRNVSDKGLFVSLGGDAV---ALVQIKDLSD 1245

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 500
              ++  ++ ++    V+ RI+       +A G L+ S  E +V        T SD+K G 
Sbjct: 1246 SYLKDWKEHFQVDQLVKGRIVS------VADGRLRMSLKESVVEKDFVKLTTISDLKEGQ 1299

Query: 501  VVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
            +V G+V  V+ FGA +       +  LC    M++  +      +  G  +  RVL V  
Sbjct: 1300 IVTGRVRKVEEFGAFIAIDRSDNLSGLCHRSEMADRAVKDAKTLYNEGDRVKARVLKVDL 1359

Query: 557  KSKRITVTHKKTLVK 571
            + KRI++  K +  K
Sbjct: 1360 EQKRISLGLKPSYFK 1374



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 112/248 (45%), Gaps = 19/248 (7%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G ++  ++T++   ++ ++      G +H+ ++ DD         S  +I +     I  
Sbjct: 1117 GMVLPGKVTKVNDRQVFVQLSELVAGPVHLVDLADDYDEANPLAHSKNEIVRVAIVEI-D 1175

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
            KSNK          LS++PS +  S   +  K + +   + +G  V G+V  V ++   +
Sbjct: 1176 KSNKK-------LRLSMRPSRVLNSSLPVKDKEITKGTKLEVGDVVRGFVRNVSDKGLFV 1228

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
            ++     A + I D     S L++++  F + + V G ++S+   +  LR+ L+   + +
Sbjct: 1229 SLGGDAVALVQIKD--LSDSYLKDWKEHFQVDQLVKGRIVSVADGR--LRMSLK---ESV 1281

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
             +K  D       + + EG IV GR+ K+      + +    +L G  H +E+ +  V D
Sbjct: 1282 VEK--DFVKLTTISDLKEGQIVTGRVRKVEEFGAFIAIDRSDNLSGLCHRSEMADRAVKD 1339

Query: 1302 PLSGYDEG 1309
              + Y+EG
Sbjct: 1340 AKTLYNEG 1347


>gi|389751237|gb|EIM92310.1| nucleic acid-binding protein [Stereum hirsutum FP-91666 SS1]
          Length = 1486

 Score =  230 bits (587), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 240/863 (27%), Positives = 389/863 (45%), Gaps = 125/863 (14%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG S T  E   I AE   E       L KK KK++ K + K        G   G+
Sbjct: 51  FPRGGGSSFTPLEVKTIRAEAVKE---ANDELFKKLKKQRSKVDVKGK------GKATGE 101

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-------LARAADA 166
           GI+G   R  + +  K I+ GMK+ G V  V    L++ LP  L G        +    A
Sbjct: 102 GINGDALRIEH-LNYKRIAVGMKILGQVVSVQPLALIVSLPNQLLGHIPITQISSELTTA 160

Query: 167 LDPILDNEIE----ANEDNL---------LPTIFHVGQLVSCIVLQLDD----------- 202
           L+ +  NE E    A ED+          L  IF  GQ V C+V  + +           
Sbjct: 161 LETMDTNEDEGMSSAGEDDDEKKTSAVPDLHEIFEPGQYVRCVVTAVHEAGSTEGMAGVG 220

Query: 203 ---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG 259
                 E   R++ LSL    + +G+    ++ G  ++A VKS+EDHGYIL+ GL + +G
Sbjct: 221 RGKSAVEKSSRRVELSLLPEQVNEGVVKSDLKPGFTMSAAVKSVEDHGYILNLGLTNISG 280

Query: 260 FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG------ 313
           FL    +A++      PG     V R +D +  VV LSS+  T +  V+ D  G      
Sbjct: 281 FLSSKEVAKSI-----PGKAKLHVGRILDVS--VVKLSSNGRTCT--VSADSAGRASASL 331

Query: 314 ---ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
               S+  ++PG +V   + ++L  G+    L +F G VD FHL    PTT +K      
Sbjct: 332 TEVTSVTSILPGELVQCLITAVLPTGLNFQVLGFFDGIVDSFHLPPGDPTTLFKIG---- 387

Query: 371 KKVNARILFVDP--TSRAVGLTLNPYLL---------HNRAPPS---HVKVGDIYDQSKV 416
           +KV AR+L+  P  +     L+L+P++L          + A P+      +G I +  +V
Sbjct: 388 QKVKARVLYEIPGHSPPRFSLSLSPHILALDVKHSETEDEAAPTIKEAYPIGTILEAVRV 447

Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHL 473
           +RV+   GL++++         ++ IS V+++ V  L      +K  S  R R+ G+  L
Sbjct: 448 IRVETERGLVVEVRP---GIQGFIHISHVSDDHVPSLSPSSGAWKLNSTHRARVTGYHPL 504

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
           +GL    LK S  E      SDV+ G VVKG V  +      V   G V  +    H ++
Sbjct: 505 DGLLQLSLKTSILEQKFLQVSDVQVGEVVKGTVKILTDTALFVSISGAVDGVVFPNHYAD 564

Query: 534 FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
             + +P K+FK GA +  RV  V  + +RI++T KKTLV+S+L I++ + EA   ++TH 
Sbjct: 565 ILLKQPQKRFKPGANIKCRVFTVDPERRRISLTAKKTLVESELPIITKFEEAKVGMLTHA 624

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            I +I +    + F+N ++G  P+ E   D     ++ + VG+ VK RI++  P    I 
Sbjct: 625 VIFRISERRLQIEFFNNIKGSVPQKEAS-DSATPLATAFSVGKPVKVRIIAVNPEDGHIT 683

Query: 652 LSFMMKPTR----VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            S           V++   V++G  V G V  +  +  ++ + + G  +  +  ++LA+ 
Sbjct: 684 ASIRQATAGSEPIVADISGVEIGHTVDGDVAEIHSDNALIILKSTGI-RALLSLKNLANA 742

Query: 708 LEHATV-MKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHIHP---- 761
            +     ++  +  G   D L+V+  N    +++ A     N  +  P+   H HP    
Sbjct: 743 RKVPVAQLRGALSVGEHLDDLVVVSRNPEKGIVIVA-----NRPKTKPA-LEHSHPLTID 796

Query: 762 ----NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ------- 810
                 VV G V      G  ++    +TG             D+S  Y VG        
Sbjct: 797 TVEIRQVVGGRVLRHHRNGTLLKLSSSVTGTL--------HPTDVSDNYDVGNIFPQIDS 848

Query: 811 SVRSNILDVNSETGRITLSLKQS 833
            V++++L ++ E  ++ LS +QS
Sbjct: 849 IVKASVLSIDKEKKQLVLSSRQS 871



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 178/755 (23%), Positives = 313/755 (41%), Gaps = 103/755 (13%)

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + I P  +V   +  ++ TG   + LG   G         G   D +  + +GQ V++ +
Sbjct: 338  TSILPGELVQCLITAVLPTGLNFQVLGFFDGIVDSFHLPPG---DPTTLFKIGQKVKARV 394

Query: 817  L-DVNSETG-RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874
            L ++   +  R +LSL               H L    + +  S   + +     E + I
Sbjct: 395  LYEIPGHSPPRFSLSL-------------SPHIL---ALDVKHSETEDEAAPTIKEAYPI 438

Query: 875  GSVIEGK--VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQA 922
            G+++E    +    + G+VV  E    + GFI    ++   V S           S  +A
Sbjct: 439  GTILEAVRVIRVETERGLVV--EVRPGIQGFIHISHVSDDHVPSLSPSSGAWKLNSTHRA 496

Query: 923  AILDVAKAERLVDLSLKTVFID-RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV 981
             +      + L+ LSLKT  ++ +F + +                D+ V + V   V+I+
Sbjct: 497  RVTGYHPLDGLLQLSLKTSILEQKFLQVS----------------DVQVGEVVKGTVKIL 540

Query: 982  KENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL 1041
             +  L +S+      + + +       K PQK+F  G ++   V  +       R  + L
Sbjct: 541  TDTALFVSISGAVDGVVFPNHYADILLKQPQKRFKPGANIKCRVFTVDPE----RRRISL 596

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
             A      S      K     VG L  A I  I    L+++F     G +   E +D  +
Sbjct: 597  TAKKTLVESELPIITKFEEAKVGMLTHAVIFRISERRLQIEFFNNIKGSVPQKEASDSAT 656

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
                 L + F +G+ V  RIIA  N  D          I  S+   +     ++ +   V
Sbjct: 657  P----LATAFSVGKPVKVRIIA-VNPEDGH--------ITASIRQATAGSEPIVADISGV 703

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAVTGH 1219
             IG  V G V ++ ++ AL+ +       L  L +     ++   Q R    +G+ +   
Sbjct: 704  EIGHTVDGDVAEIHSDNALIILKSTGIRALLSLKNLANARKVPVAQLRGALSVGEHLDDL 763

Query: 1220 VL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
            V+ S N EK ++ +  RP      + +  ++ D ++       +VGGR+  +     G +
Sbjct: 764  VVVSRNPEKGIVIVANRPKTKPALEHSHPLTIDTVEI----RQVVGGRV--LRHHRNGTL 817

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            +++   + G +H T+     VSD    YD G   P         VK  VL I +  +   
Sbjct: 818  LKLSSSVTGTLHPTD-----VSD---NYDVGNIFP----QIDSIVKASVLSIDKEKK--- 862

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
              +L L S    +   N  D+   VD   + ++ + DL     ++G++K+V   G F+ L
Sbjct: 863  --QLVLSSRQSRLHPDNHPDV---VD---REIKSVSDLKVGETIRGFIKSVAEHGLFVTL 914

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
             R +DA+V +  L D YV+  +  F + +LV GRVL ++   K+VE+T ++ D   +  S
Sbjct: 915  GRDVDARVQIKELFDEYVKDWKPRFQVNQLVKGRVLRIDAEKKQVELTFRSGDLSRSKPS 974

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
                LS+L  G  + G++KRVE YGLFI I+ + L
Sbjct: 975  --ITLSDLEEGQKIEGRVKRVEEYGLFIEIDGSKL 1007


>gi|340518409|gb|EGR48650.1| hypothetical protein TRIREDRAFT_78062 [Trichoderma reesei QM6a]
          Length = 1799

 Score =  229 bits (584), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 344/1378 (24%), Positives = 565/1378 (41%), Gaps = 175/1378 (12%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIHAEVDAEF---EAVERGLHKKNKKKKKK-------TER 98
            D+ PVFPRGGG  LT  E+ +I  E  A+    E  E G   + KK KK        TE+
Sbjct: 65   DEEPVFPRGGGSVLTPLEQKKIQMEAKADAIREEEFETGAKSQKKKAKKAAVKSDKKTEK 124

Query: 99   KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
            KA E    + SL                  K +  G  + G V  +N+  + + LP  L 
Sbjct: 125  KAEEDSIRIESL----------------NFKRLVRGSLVLGQVMRINKLSVEVSLPNNLM 168

Query: 159  GLARAADALDPILDNEIEANE---------------DNLLPTIFHVGQLVSCIVLQLDDD 203
            G A    A+   L + +E                  D  L ++F VGQ V   VL   D 
Sbjct: 169  GHASIV-AISSQLTSRLEGGATEEGDSEEDESSDETDVNLKSMFKVGQYVRAYVLSTKDT 227

Query: 204  KKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
                 GKR+I LSLR +    GL  + V     + A V S+E+ G ++  G+P   GFLP
Sbjct: 228  ATGGKGKRRIELSLRPNEANSGLETDDVVPNSTVMASVVSVEERGCVMDLGMPGLNGFLP 287

Query: 263  RNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL 319
               +  +  ID   ++PG +    V     + K+  L+   D V           +I+  
Sbjct: 288  NGEI--DPLIDQERLQPGAVFLCQVTG-KGSNKIAQLTLKQDKVGSTKAFPADATTINTF 344

Query: 320  VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
            +PG +VS  V      G+    +     T D+ H        + K+ Y    KV ARI+ 
Sbjct: 345  LPGTLVSVLVSDNEGRGLAGKIMGTLDATADLIHSGIGPNNVDLKSKYKVGSKVKARIIC 404

Query: 380  VDPTSR--AVGLTLNPYLLH------------NRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
              PT++   VG++L P++L              + P   + +    ++  V  V+  +GL
Sbjct: 405  NFPTAKDPKVGVSLLPHILSLTQKRQDADTEVTKRPLEVLPISSFVEKCTVRHVEADIGL 464

Query: 426  LLD--IPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGI 480
             +D  IP        +V IS V + +V  L +    YK G+  R R++G+  ++GL +  
Sbjct: 465  FVDTGIP----GLGGFVHISRVKDGKVDALYESSGPYKVGTVHRGRVVGYNEMDGLFSIS 520

Query: 481  LKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFE 535
             + S  E       DV  G VV G++  +        G I++   G+       HMS+  
Sbjct: 521  FEKSLLEQQYIRLEDVPIGSVVNGEIEKLVIKEQGVTGLIIKIADGMSGFVSENHMSDIR 580

Query: 536  IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            +  P KKF+ G ++  RVL +   R  + +T KKTLV S+  ++ SY + +  + T G I
Sbjct: 581  LQHPEKKFREGMKVKARVLSLNFSRRQLRLTLKKTLVNSEAPVIKSYDDVSIGMKTLGTI 640

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
             K++ +G  ++FY  ++GF P SE+      +P+  + VGQVV    +   P ++R  +S
Sbjct: 641  VKVQPNGAHIQFYGRLRGFLPVSEMSEAYIRDPTEHFRVGQVVSVHALEVDPEAKRFIVS 700

Query: 654  F-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
                    + K T +     + +G +VS  V   T + + V ++     K  +P  HL D
Sbjct: 701  CKDPGAFGLEKQTALKN---LNVGDIVSAKVTQKTEDQIFVELVDSQL-KAILPVGHLTD 756

Query: 707  HLEHATVMK-SVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQ--LPSDASHIHP 761
                        I  G     L+VL+   +   ++LS K SL+ +AQ   L         
Sbjct: 757  KSSSKNQYAWKRISAGQTLSNLMVLEKYENRRAIILSQKPSLVKAAQDKTLLKSFEDAKV 816

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQ-RADLSKTYYVGQSVRSNILDV 819
             +VV G+V NI  T  FV+F   L    P+ +   D Q + D     Y  +S+   I+  
Sbjct: 817  GAVVQGFVRNITVTAVFVQFAANLHALLPKGRLPADAQSQPDFGLRKY--ESIEVRIIST 874

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
              E  RI         +  DA  ++      +      +           +G   GS  +
Sbjct: 875  IPEMKRI-------LVAPADAPVVEPENKKSKSSTKTSAPAPE-------DGLAFGSTAQ 920

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA------------TVESGSVIQAAILDV 927
             K+    D  + V   + SDV G I   Q+                     V++  +L V
Sbjct: 921  AKITSIKDTQLNVQLVD-SDVQGRIDVSQIYDKWEDIPDPKDPLDKFNKKQVLRVKVLGV 979

Query: 928  --AKAERLVDLSLK---TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
              AK  R +  S +   +V     + ++ +  A K     E    L V  T  A V  V 
Sbjct: 980  HDAKDHRFLPFSHRSAHSVLELTCKPSHLSSDAPKPISLEE----LKVGDTHIAFVNNVT 1035

Query: 983  ENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL 1040
              YL ++L P     I     S D +     +  F  G ++ A V A+   +   RL L 
Sbjct: 1036 SQYLWVNLSPNVRGRISIMDASDDLSLLNDLEANFPVGSALKARVTAVDPQNN--RLDLS 1093

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
             ++ + +E  +    K+  +      +  +IT++   ++ +K      G +H+ ++ DD 
Sbjct: 1094 ARSANASEAITWTSLKQNMT------LPGKITKVNERQVLVKLSESVSGPVHLPDMADDY 1147

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS--MLTVSEIGSKLLFEE 1158
            S V     S +K G  V   I+     P  K+     LS++PS  M + S +  K + + 
Sbjct: 1148 STVDT---SKYKKGDIVRVSIV--DVDPSNKR---IRLSMRPSRIMSSTSPVVDKEITKI 1199

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
              ++ G  V G+V  V ++   + +   + A  F+  S      L+E++  F I + V G
Sbjct: 1200 TQLATGDIVRGFVKNVADKGLFVLLGGQVTA--FVKISNLSDRFLKEWKDGFQIDQLVKG 1257

Query: 1219 HVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
             V++++     L L L+    D   D T  +S ++    I EG IV G + K+      +
Sbjct: 1258 RVIALDAATNQLELSLKSSVVD--EDYTPPLSYND----IKEGQIVTGVVRKVEEFGAFI 1311

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
            +V    ++ G  H +++ +  V            D    Y EG  VK +VLE+  T R
Sbjct: 1312 LVDNSANVSGLCHRSQMADNPVK-----------DATKLYKEGDKVKARVLEVDATKR 1358



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 221/443 (49%), Gaps = 57/443 (12%)

Query: 1064 GSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTAR 1120
            GS  QA+IT IK  +L ++       GRI ++++ D   ++ +  +    F   Q +  +
Sbjct: 916  GSTAQAKITSIKDTQLNVQLVDSDVQGRIDVSQIYDKWEDIPDPKDPLDKFNKKQVLRVK 975

Query: 1121 IIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            ++   +  D +  FL           EL+ KPS L+ S+    +  EE  + +G     +
Sbjct: 976  VLGVHDAKDHR--FLPFSHRSAHSVLELTCKPSHLS-SDAPKPISLEE--LKVGDTHIAF 1030

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            V  V +++  + +S +++ ++ I+D++ + S L + +  F +G A+   V +++ +   L
Sbjct: 1031 VNNVTSQYLWVNLSPNVRGRISIMDASDDLSLLNDLEANFPVGSALKARVTAVDPQNNRL 1090

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L         S ++ + S     T + +   + G+I+K+      ++V++   + G VH
Sbjct: 1091 DL---------SARSANASEAITWTSLKQNMTLPGKITKV--NERQVLVKLSESVSGPVH 1139

Query: 1291 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
              ++     +D  S  D       S Y +G  V+  ++++  + +    + LS+R S   
Sbjct: 1140 LPDM-----ADDYSTVD------TSKYKKGDIVRVSIVDVDPSNK---RIRLSMRPSRI- 1184

Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
            MSST     S  VD   K + KI  L+   IV+G+VKNV  KG F++L  ++ A V +SN
Sbjct: 1185 MSST-----SPVVD---KEITKITQLATGDIVRGFVKNVADKGLFVLLGGQVTAFVKISN 1236

Query: 1411 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHV 1468
            LSD +++  +  F I +LV GRV++++  + ++E++LK+S  D         N++     
Sbjct: 1237 LSDRFLKEWKDGFQIDQLVKGRVIALDAATNQLELSLKSSVVDEDYTPPLSYNDIKE--- 1293

Query: 1469 GDIVIGQIKRVESYGLFITIENT 1491
            G IV G +++VE +G FI ++N+
Sbjct: 1294 GQIVTGVVRKVEEFGAFILVDNS 1316



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 179/422 (42%), Gaps = 97/422 (22%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1165
            +L S +K+G  V ARII   N P  K   +  +S+ P +L++++       ++ D  + +
Sbjct: 387  DLKSKYKVGSKVKARIIC--NFPTAKDPKVG-VSLLPHILSLTQ-----KRQDADTEVTK 438

Query: 1166 R------VTGYVYKVDNEWALLTISRHLKAQ--LFI--------------------LDSA 1197
            R      ++ +V K           RH++A   LF+                    +D+ 
Sbjct: 439  RPLEVLPISSFVEKC--------TVRHVEADIGLFVDTGIPGLGGFVHISRVKDGKVDAL 490

Query: 1198 YE---PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
            YE   P ++    R   +G      + SI+ EK LL       Q  I  + V I      
Sbjct: 491  YESSGPYKVGTVHRGRVVGYNEMDGLFSISFEKSLLE------QQYIRLEDVPI------ 538

Query: 1255 TFIHEGDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                 G +V G I K++    GV GL+++I   + G V    + +I +  P     E +F
Sbjct: 539  -----GSVVNGEIEKLVIKEQGVTGLIIKIADGMSGFVSENHMSDIRLQHP-----EKKF 588

Query: 1312 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1371
                   EG  VK +VL ++ + R    + L+L+ +L              V++    ++
Sbjct: 589  R------EGMKVKARVLSLNFSRR---QLRLTLKKTL--------------VNSEAPVIK 625

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
              +D+S  M   G +  V   G  I    +L   + +S +S+ Y+  P + F +G++V+ 
Sbjct: 626  SYDDVSIGMKTLGTIVKVQPNGAHIQFYGRLRGFLPVSEMSEAYIRDPTEHFRVGQVVSV 685

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
              L V+P +KR  V+ K  D       +   L NL+VGDIV  ++ +     +F+ + ++
Sbjct: 686  HALEVDPEAKRFIVSCK--DPGAFGLEKQTALKNLNVGDIVSAKVTQKTEDQIFVELVDS 743

Query: 1492 NL 1493
             L
Sbjct: 744  QL 745



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 16/247 (6%)

Query: 431  STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR------HLEGLATGILKAS 484
            S  VS P  V + D+A++       KYK+G  VRV I+          L    + I+ ++
Sbjct: 1131 SESVSGP--VHLPDMADDYSTVDTSKYKKGDIVRVSIVDVDPSNKRIRLSMRPSRIMSST 1188

Query: 485  A--FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            +   +  +   + +  G +V+G V  V   G  V   G V A   + ++S+  + +    
Sbjct: 1189 SPVVDKEITKITQLATGDIVRGFVKNVADKGLFVLLGGQVTAFVKISNLSDRFLKEWKDG 1248

Query: 543  FKVGAELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            F++   +  RV  L   + ++ ++ K ++V        SY +  +  I  G + K+E+ G
Sbjct: 1249 FQIDQLVKGRVIALDAATNQLELSLKSSVVDEDYTPPLSYNDIKEGQIVTGVVRKVEEFG 1308

Query: 601  CFVRFYN--GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
             F+   N   V G   RS++  +P  + + +Y  G  VK R++      RRIN  F +KP
Sbjct: 1309 AFILVDNSANVSGLCHRSQMADNPVKDATKLYKEGDKVKARVLEVDATKRRIN--FGLKP 1366

Query: 659  TRVSEDD 665
            +   ++D
Sbjct: 1367 SFFEDED 1373



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 123/299 (41%), Gaps = 34/299 (11%)

Query: 115  ISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE 174
            +S +    +  IT  ++   M L G + +VNE+ +++ L   + G     D  D      
Sbjct: 1092 LSARSANASEAITWTSLKQNMTLPGKITKVNERQVLVKLSESVSGPVHLPDMAD------ 1145

Query: 175  IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS-------- 226
               +   +  + +  G +V   ++ +D   K     +I LS+R S +    S        
Sbjct: 1146 ---DYSTVDTSKYKKGDIVRVSIVDVDPSNK-----RIRLSMRPSRIMSSTSPVVDKEIT 1197

Query: 227  -LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQ 281
             +  +  G ++  +VK++ D G  +  G    T F+  +NL++    + K G     L++
Sbjct: 1198 KITQLATGDIVRGFVKNVADKGLFVLLG-GQVTAFVKISNLSDRFLKEWKDGFQIDQLVK 1256

Query: 282  GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG--VML 339
            G V ++D     + LS     V +  T  L   S + +  G +V+  V+ + E G  +++
Sbjct: 1257 GRVIALDAATNQLELSLKSSVVDEDYTPPL---SYNDIKEGQIVTGVVRKVEEFGAFILV 1313

Query: 340  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
                  +G      + +  P  +    Y +  KV AR+L VD T R +   L P    +
Sbjct: 1314 DNSANVSGLCHRSQMADN-PVKDATKLYKEGDKVKARVLEVDATKRRINFGLKPSFFED 1371


>gi|395742011|ref|XP_002821182.2| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Pongo abelii]
          Length = 1839

 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 252/1004 (25%), Positives = 447/1004 (44%), Gaps = 132/1004 (13%)

Query: 513  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV----KSKRITVTHKKT 568
            GA  +   GV A   L H+S+ + V   + FK G     R++      ++ ++ +T KKT
Sbjct: 433  GATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDXLCDPEAXKLMMTLKKT 492

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            L++SKL +++ YA+A   L  HG+I +++ +GC V+FYN VQG  P+ EL  +   +P  
Sbjct: 493  LIESKLPVITCYADAKPGLQIHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPER 552

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVD 678
            +++ GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V 
Sbjct: 553  VFYTGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINVGQLVDVKVL 612

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
              T + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++L
Sbjct: 613  EKTKDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVL 671

Query: 739  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L  K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D
Sbjct: 672  LCRKPALVSTVEGGQDPKNFSEIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSD 731

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIA 854
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      L +  E++ 
Sbjct: 732  KFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQ 791

Query: 855  MLQS--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAG 911
             ++S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG
Sbjct: 792  GVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAG 851

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       H
Sbjct: 852  QEVESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------H 896

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
            Q   AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 897  Q---AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEP 953

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 954  GVTG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTV 1011

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD         +  K+G+ VTAR+I      DM 
Sbjct: 1012 KSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKMVTARVIGGR---DM- 1066

Query: 1132 KSFLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV-- 1171
            K+F +             ELS++PS L    T     S    E+      GQ VT ++  
Sbjct: 1067 KTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKK 1126

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
            Y V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L 
Sbjct: 1127 YNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLC 1186

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L L             I    ++    EG++  GR+ K+     GL V           F
Sbjct: 1187 LSL-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP--------F 1220

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
             ++  + +      Y E    PL  +   + V+C +L  +  V     + LSLR      
Sbjct: 1221 GKIGTVSIFHMSDSYSEM---PLEDFVPQKVVRCYILSTADNV-----LTLSLR------ 1266

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
            SS  + +  + V+ P   +  I+D+    +++GY+ ++   G F  L   +      S++
Sbjct: 1267 SSRTNPETKSKVEDP--EINSIQDIKEGQLLRGYIGSIQPHGVFFRLGPSVVGLARYSHV 1324

Query: 1412 SDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            S   +       K  P GKL+  RVL +      VE++    D+
Sbjct: 1325 SQHSLSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1368



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 244/518 (47%), Gaps = 45/518 (8%)

Query: 54  FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERG--LHKKNKKKKKKTERKANETVDDLGS 109
           FPRGG   + + E+  +   E D  F+ + E G    KKN+K   KT++   E  +    
Sbjct: 60  FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKNQKGPAKTKKLKIEKRE---- 115

Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                 S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 116 ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 169

Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                 NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 170 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 227

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
            + LS E ++ GM+LT  + S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 228 NRVLSAEALKPGMLLTGTISSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 287

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 288 GQYLNCIVEKVKGNGGVVSLSIGHSEVSTAIATEEQSWNLNNLLPGLVVKAQVQKVTPFG 347

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
           + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 348 LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 402

Query: 397 HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               P + +   K+G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 403 QPGRPLTRLSCQKLGAVLDDIPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 459

Query: 454 EKKYKEGSCVRVRILG-FRHLEGLATGI-LKASAFEG---LVFTHSDVKPGMVVKGKVIA 508
            + +K G+  + RI+      E     + LK +  E    ++  ++D KPG+ + G +I 
Sbjct: 460 PEAFKPGNTHKCRIIDXLCDPEAXKLMMTLKKTLIESKLPVITCYADAKPGLQIHGFIIR 519

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
           V  +G IV+F   V+ L P   +S   I  P + F  G
Sbjct: 520 VKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTG 557



 Score = 41.6 bits (96), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S++ PGM++ G V ++  +G  +QFP G+  L P   MS+  +      F  G  +V +V
Sbjct: 692 SEIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKV 751

Query: 554 LGVKSKR 560
             V  ++
Sbjct: 752 TNVDEEK 758


>gi|4454542|gb|AAD20941.1| apoptosis-linked gene 4, deltaC form [Mus musculus]
          Length = 768

 Score =  228 bits (580), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 208/745 (27%), Positives = 350/745 (46%), Gaps = 77/745 (10%)

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
            +K GS  +  I+ +  ++ LA   L+ S        + D+K G VVKG V+A+  FG +V
Sbjct: 18   FKPGSTHKCXIIDYSQMDELALLFLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILV 77

Query: 517  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
            +    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL
Sbjct: 78   KVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 137

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
              ++ Y  A   L THG I +++ +GC V+FYN +QG  P+ EL      +P ++++ GQ
Sbjct: 138  PFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYNDLQGLVPKHELSNPAIPDPETVFYTGQ 197

Query: 635  VVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDVVTPNA 684
            VVK  ++S  P+  R+ LSF +      +D            V++G LV   V   T   
Sbjct: 198  VVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTG 257

Query: 685  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
            + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL  K +
Sbjct: 258  LEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPA 316

Query: 745  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D      
Sbjct: 317  LVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTP 376

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-S 858
            S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   +    
Sbjct: 377  SEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLM 436

Query: 859  SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
            S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG  VE G
Sbjct: 437  SNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPG 496

Query: 918  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
               +  +L V   +  V +SL    ++R           K ++ R++S+    HQ    I
Sbjct: 497  QKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KPRKLRKSSR----HQ---GI 538

Query: 978  VEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
            V+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+       T G 
Sbjct: 539  VQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVT-GL 597

Query: 1037 LLLL---------LKAISETETSSSK------------------RAKKKSSYDVGSLVQA 1069
            +L +         +    ++ET   K                  ++KK+ S  +G  V  
Sbjct: 598  ILAVEGPVFKRTRMPVQRDSETVDDKGEEKEEEEEEKEEENLTVKSKKRHSLAIGDKVTG 657

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KS 1125
             I  +K   + +    GF G  H + + DD   V  +  +  K G+ VTAR+I     K+
Sbjct: 658  TIKAVKATHVVVTLADGFVGCFHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKT 716

Query: 1126 NK--PDMKKSF---LWELSIKPSML 1145
            +K  P     F   + ELS++PS L
Sbjct: 717  SKFLPISHPRFVLTILELSVRPSEL 741



 Score = 48.5 bits (114), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 148/359 (41%), Gaps = 36/359 (10%)

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
           G +V   V +I   G+++       G V   HL +     N +  Y+   +V  R+L  D
Sbjct: 60  GTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIM-MKNPEKKYSPGDEVKCRVLLCD 118

Query: 382 PTSRAVGLTLNPYLLHNRAP------------PSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
           P ++ + +TL   L+ ++ P             +H  +  + D   +V+    L  L  +
Sbjct: 119 PEAKKLIMTLKKTLVTSKLPFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYNDLQGL--V 176

Query: 430 PSTPVSTPAYVTISDV-AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           P   +S PA      V    +V K+     E S  R+ +L FR    L+    K    E 
Sbjct: 177 PKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERM-LLSFRL---LSDSRPKDPGVES 232

Query: 489 LVFTHSDVKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKP-GKKFKVG 546
                  V+ G +V  KV+     G  +   P    A  P PH+S+     P    +   
Sbjct: 233 SQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQT 292

Query: 547 AELVFRVLGVKSKRITVTHKKTLVKSKLAILS---------SYAEATDRLITHGWITKIE 597
            + + RVL      ++ + +  L+  K A++S         S +E    ++  G++  I+
Sbjct: 293 GDTLHRVLC-----LSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIK 347

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           ++G FV+F +G+ G +P++ +       PS  +  GQ V  ++ +   + +R+ LS  +
Sbjct: 348 EYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRL 406



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 161/392 (41%), Gaps = 45/392 (11%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +G++V+  +  IKP  + +K G    G +    + D    +++N    +  G  V  R++
Sbjct: 59   IGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD---IMMKNPEKKYSPGDEVKCRVL 115

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWAL 1180
                 P+ KK  +   ++K +++T     SKL F        +G +  G + +V +   +
Sbjct: 116  L--CDPEAKKLIM---TLKKTLVT-----SKLPFITWYEGAKLGLQTHGVIIRVKDYGCI 165

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            +     L  Q  +         + + +  F+ G+ V   VLS    K+ + L  R   D 
Sbjct: 166  VKFYNDL--QGLVPKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLLSDS 223

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKNICV 1299
                    S+      +  G +V  ++  +     GL V I PH     +    L +   
Sbjct: 224  RPKDPGVESSQKKTGAVRIGQLVDVKV--LEKTKTGLEVAILPHNTPAFLPTPHLSDHAA 281

Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1359
            + PL  +     D L           +VL +S++ R   H+ L  + +L  +S+      
Sbjct: 282  NGPLLHHWLQTGDTLH----------RVLCLSQSER---HILLCRKPAL--VSTVEG--- 323

Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1419
                   G+  + + ++ P M++ G+VK +   G F+     L      + +SD +V +P
Sbjct: 324  -------GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTP 376

Query: 1420 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
             + F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 377  SEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 408



 Score = 40.4 bits (93), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            +  D+    +V+G V  +   G  + +  ++   V   +L+D  +++PEK++  G  V  
Sbjct: 53   RYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKC 112

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            RVL  +P +K++ +TLK +   T+    I       +G    G I RV+ YG  +   N
Sbjct: 113  RVLLCDPEAKKLIMTLKKT-LVTSKLPFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYN 170


>gi|327305835|ref|XP_003237609.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
 gi|326460607|gb|EGD86060.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
          Length = 1823

 Score =  227 bits (579), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 338/1431 (23%), Positives = 603/1431 (42%), Gaps = 154/1431 (10%)

Query: 3    ASSRKSQKKSSKDGPKFNKAS---------------KNQFKNSKKQINDAVEAQDLALPP 47
            +SS   +KK+  D  + N AS               K   K SKK  N   +A  +++  
Sbjct: 14   SSSSAPKKKAKVDAEELNGASKLKKKSKEPKEQKEQKETVKASKKDTNTVSKAAPISMLR 73

Query: 48   DDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERG------LHKKNKKKKKKTERKAN 101
            D+  P FPRGG + LT  ER +I  +   +    ++G       + +++      E K +
Sbjct: 74   DEQ-PAFPRGGNNVLTPLERKQIQIQATKDVLFEQKGKNGAEFANSEDEGSLGAAEDKKD 132

Query: 102  ETVDDLGSLFGDGISGKLPRYANK------ITLKNISAGMKLWGVVAEVNEKDLVICLPG 155
             +            + + P  A +      +T K I+ G ++ G V+ +   D+ + LP 
Sbjct: 133  ASTKSKKRKAKASKTKEAPAAAKQGVKVESLTYKRIAVGSRILGQVSSIGLHDISLALPN 192

Query: 156  GLRGLARAADALDPILDNEIEA--------------NEDNLLPTIFHVGQLVSCIV---L 198
             L G     +A+   L  ++EA              ++D  L +   VGQ +   V   +
Sbjct: 193  NLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEEDEDDDDLDLKSYVKVGQYLRAAVTATI 251

Query: 199  QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-- 256
            + +DD+K   K+ I LS+       GL+   +     + A V S+EDHG ++  GL    
Sbjct: 252  RNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVISVEDHGLVMDLGLEENE 311

Query: 257  FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSD---PDTVSKCVTKD 310
              GF+    L   +G+D   VK G +   +V   + +  V+ LS+D   P +V K    +
Sbjct: 312  AKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVIKLSADLASPGSVKKAHFLN 369

Query: 311  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
                +I+  +PG      +  +   G++   +      VD+ H   +    +    Y+  
Sbjct: 370  T-APTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGASDGKKDLTTKYHAG 428

Query: 371  KKVNARILFVDPTSRAVGL---TLNPYL-------LHNRAPPSHVKVGDIYDQSKVVRVD 420
             K+  R++   P+S  V L    L+  L       L N A      + DI  + KV  VD
Sbjct: 429  AKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGAGDDLPSISDIIPEVKVTYVD 488

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
              LGL + + ST      +V +S +A+   + +  +E  YK GS    RI+GF  ++ L 
Sbjct: 489  SSLGLYVQLGST--KHQGFVHLSRIADGRVDSISSIEGPYKVGSTHEGRIIGFSAMDNLF 546

Query: 478  TGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMS 532
               L+    E   F   DV  G VVKGK+    I  +   G IV     +  L P  HM+
Sbjct: 547  LVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMA 606

Query: 533  EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
            + ++  P KKF+ G ++  RVL V  + +++ +T KK+L+ S  A    Y   +    + 
Sbjct: 607  DTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGNRSP 666

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV    ++    + R+
Sbjct: 667  GTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERL 726

Query: 651  NLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
             +S    P+ V+ D     + V  G +VSG V   + + +++ +   G     I ++H++
Sbjct: 727  IVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVFEKSSDDLLIKLQDSGLI-ARITSDHIS 784

Query: 706  D-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIH 760
            D      T   + I+ G + D LLV   + S+ L+  + K +L  +A +  LP++   I 
Sbjct: 785  DGSSAKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATLKEAAAEGRLPANFEDIK 844

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
                V G V NII  G FV FL  LTG  P+    D   +     Y   Q + + +  V 
Sbjct: 845  HGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASRPDFGYSRFQVISATVCAVQ 904

Query: 821  SETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 875
             ++ R  LSL+     +    S  AS        E+K   +  +     ELK +E  ++G
Sbjct: 905  EDSDRFLLSLRPVSKPKQQSDSNSAS--------EKKAPAVVLNNPVDEELKAMEDIVVG 956

Query: 876  SVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 925
             + + K+    D    VV        +   E  D +  I   +    +  S  ++   +L
Sbjct: 957  RITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKSFHSKEILPVRVL 1016

Query: 926  DV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKE 983
             +  A+  + + +S ++  +  +  +      Q  + K    + L         V  + E
Sbjct: 1017 GIHDARNHKFLPISHRSGKVSVYELSTKRSCLQAGEFKPLHLEQLKAGDQYIGFVNNIAE 1076

Query: 984  NYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL 1041
            + L L++ P     +    +S D + +   QK F  G ++   V  + +     RL L  
Sbjct: 1077 DCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVTGIDAEKN--RLDLSA 1134

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            +  S  +T +     K      G ++   +T+I   ++ ++      G I + ++ DD +
Sbjct: 1135 RIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDNVVGAISLIDMADDYT 1188

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG--SKLLFEEC 1159
             V     +NF   + +   ++   + P+ K SF    S++PS +  S +      +    
Sbjct: 1189 KVNP---TNFHKNEALRVCVV-DVDIPNKKISF----SVRPSKVLSSSLPVVDPEITSID 1240

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ IGQ V G++ +VDN    +T+   + A  +I  S    S L+E++  F + + V G 
Sbjct: 1241 NLKIGQIVRGFIRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLKEWKDEFQVDQLVQGR 1298

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            +  ++K+   +++ L+      + K      D     +  G IV G++ K+      + +
Sbjct: 1299 LTVVDKDNNKIQMTLKKSALDPNYKPPFTLKD-----LKVGQIVTGKVRKVEEYGAFIAI 1353

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
                +L G  H +E+    V D        Q      Y++   VK KVL++
Sbjct: 1354 DGSANLSGLCHRSEMAEKRVEDAT------QL-----YEKDDIVKAKVLKV 1393



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 204/871 (23%), Positives = 382/871 (43%), Gaps = 125/871 (14%)

Query: 667  VKLGSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGY 722
            V +GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +   + G 
Sbjct: 565  VTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKKFREGL 621

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            +   ++L +D +   L L+ K SL+NS      D   I   +   G +  I   G  V+F
Sbjct: 622  KVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGNRSPGTLIKIQNNGAIVQF 681

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     + D  
Sbjct: 682  YGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLIVSCKDPSTVTAD-- 739

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
              Q  F   EK+                     G V+ G V E +   +++  ++   + 
Sbjct: 740  -YQSAF---EKVHP-------------------GLVVSGTVFEKSSDDLLIKLQDSGLIA 776

Query: 902  GFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRFREANS 951
               + H   G++ +  S +             +  V K+ RL++++ K            
Sbjct: 777  RITSDHISDGSSAKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL--------- 827

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKF 1010
             ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D +  + 
Sbjct: 828  -KEAAAEGRLPANFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASR- 885

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA--------- 1055
            P   +   Q + ATV A+   S   R LL L+ +S      ++ ++S K+A         
Sbjct: 886  PDFGYSRFQVISATVCAVQEDSD--RFLLSLRPVSKPKQQSDSNSASEKKAPAVVLNNPV 943

Query: 1056 ----KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FS 1109
                K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ +      
Sbjct: 944  DEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLK 1003

Query: 1110 NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            +F   + +  R++   +  + K         K  ++ELS K S L   E    L  E+  
Sbjct: 1004 SFHSKEILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQAGEF-KPLHLEQ-- 1060

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +  G +  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A+   V
Sbjct: 1061 LKAGDQYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAV 1120

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
              I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI      ++VQ
Sbjct: 1121 TGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR--QVLVQ 1169

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            I  ++ G +   ++ +          D  + +P + + + + ++  V+++    +    +
Sbjct: 1170 INDNVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK---KI 1215

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
              S+R S           LS+ +      +  I++L    IV+G+++ V + G F+ L  
Sbjct: 1216 SFSVRPS---------KVLSSSLPVVDPEITSIDNLKIGQIVRGFIRRVDNIGVFVTLGH 1266

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1460
             + A + +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S +   +    
Sbjct: 1267 DVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMTLKKS-ALDPNYKPP 1325

Query: 1461 NNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
              L +L VG IV G++++VE YG FI I+ +
Sbjct: 1326 FTLKDLKVGQIVTGKVRKVEEYGAFIAIDGS 1356



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 138/313 (44%), Gaps = 33/313 (10%)

Query: 541  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            K F +G+ L   V G+ +++  +     +  S   +  + A+ +  +I  G +TKI    
Sbjct: 1108 KNFPIGSALQVAVTGIDAEKNRLDLSARIGSSAKTL--TVADLSKGMILVGRVTKITDRQ 1165

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK-CRIMSSIPASRRINLSFMMKPT 659
              V+  + V G     ++  D      + +H  + ++ C +   IP  +   +SF ++P+
Sbjct: 1166 VLVQINDNVVGAISLIDMADDYTKVNPTNFHKNEALRVCVVDVDIPNKK---ISFSVRPS 1222

Query: 660  RV------------SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            +V            +  D +K+G +V G +  V  + + V+V         I    L+D 
Sbjct: 1223 KVLSSSLPVVDPEITSIDNLKIGQIVRGFIRRV--DNIGVFVTLGHDVTAYIRVSDLSD- 1279

Query: 708  LEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 762
                + +K   K  ++ DQL+     V+D +++ + ++ K S ++   + P     +   
Sbjct: 1280 ----SFLKE-WKDEFQVDQLVQGRLTVVDKDNNKIQMTLKKSALDPNYKPPFTLKDLKVG 1334

Query: 763  SVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
             +V G V  + E G F+   G   L+G   RS+  + +  D ++ Y     V++ +L V+
Sbjct: 1335 QIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVD 1394

Query: 821  SETGRITLSLKQS 833
             E G+I L LK S
Sbjct: 1395 LEKGQIALGLKAS 1407


>gi|393218210|gb|EJD03698.1| hypothetical protein FOMMEDRAFT_139869 [Fomitiporia mediterranea
           MF3/22]
          Length = 1462

 Score =  227 bits (579), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 239/887 (26%), Positives = 392/887 (44%), Gaps = 86/887 (9%)

Query: 12  SSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALP----PDDDVPVFPRGGGHSLTQRER 67
           S K G + N +S  Q +  + + +D  E      P    P++    FPRGGG S T  E 
Sbjct: 3   SKKRGSEPNSSSSVQRQRKRIKTSDPTEDVKTQTPSVLRPEE--VDFPRGGGTSFTPVEY 60

Query: 68  DEIHAEVDAEF-------EAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
             I AE   E        ++  +    K  K+ K   R A +   ++      G+     
Sbjct: 61  KAIRAEAIKELNDEDVFGDSAAQNKPSKKAKRVKSASRSAKKLSTEVHKPKSSGV----- 115

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------------LARAA 164
                +  K I  GMKL G +  V    L++ LP  L G                 A A 
Sbjct: 116 -RVEHLNYKRIVPGMKLLGQIVAVYPFSLIVSLPDQLLGHVPITHISSELTSALEAADAD 174

Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL-------------DDDKKEIGKRK 211
           D  +   ++E  A +   L  +F  GQ V  +V  +               D  E   R+
Sbjct: 175 DVSEEGSESEGHAKDPPDLTDLFQTGQYVRAVVSSVKPPGSTDGQIFSHSKDGVEKASRR 234

Query: 212 IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG 271
           + LSL    +  GL+   +++G  L A VKS+EDHGY+L+ GLP  +GFL      + S 
Sbjct: 235 VELSLIPEQVNSGLNKSDLKKGHTLCAAVKSVEDHGYVLNIGLPDVSGFLRFKAQKDGSS 294

Query: 272 IDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 331
              + G L+  +V  +    +   L+         + K++  +S   ++PG +V   V S
Sbjct: 295 DRRRTGSLMNTIVEKMGDDGRTCILTDSESDFKNAIQKEVTNVSS--VLPGTLVQALVTS 352

Query: 332 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRA-VGL 389
           ++ +G+ +  L  F GT+D++HL    P++   +++   KK+ ARIL+ V  TS     L
Sbjct: 353 VVPSGLAVQILGSFEGTIDLYHL----PSSTSASEFKVGKKLKARILYDVAGTSPPRFAL 408

Query: 390 TLNPYLL----HNRAPPS------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           +L  ++L      R+  S         VG +    KV RV+   GL++ +         +
Sbjct: 409 SLKEHVLTLDAKKRSAESGQSVQESFPVGTMLKSVKVKRVEPERGLVVGVEE---DLEGF 465

Query: 440 VTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDV 496
           V IS V+++ V  L      +K G+  + R++GF  L+G+     + S          DV
Sbjct: 466 VHISHVSDDHVPSLSSNSGPWKIGTSRQARVVGFHALDGILQLSFRPSVLSQKFLRVDDV 525

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
             G +VKG V  +      V   G V A+    H ++  +  P K+FK G  L  RVL V
Sbjct: 526 TVGELVKGTVKKLTESCLFVSINGNVDAMIWPNHYADIMLKHPQKRFKPGGTLKCRVLVV 585

Query: 557 KS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +   KRI +T KKTLV+S L ILS   +A   ++ HG I K+ +    V FYN ++   P
Sbjct: 586 EPDRKRIMLTAKKTLVESDLPILSKIEDAEAGMVIHGTICKVLEKSLVVEFYNHLRAVVP 645

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSL 672
             E+   P    +  Y VG+ +K  I+S    + RI  S    +  + +     V++G  
Sbjct: 646 AREVSETPVTNLAESYAVGKSLKVCIVSVDREAGRIVASIRQALGESTIGNIKSVEVGQT 705

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVL 730
           VSG V  V  + VV+ ++    ++  I   ++A+     TV  ++S I  G + + L+V+
Sbjct: 706 VSGTVQEVHGDNVVL-ILEPSRARALISLHNIANR-RRKTVEQLRSSITSGEKMEDLVVV 763

Query: 731 D-NESSNLLLSAKY--SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
             N    +++ A       +S++Q P D S +   S V G V  + + G  V+F GR+TG
Sbjct: 764 SRNLDKGIVIVANRPSPKASSSKQEPIDLSALSEGSTVVGRVVKLGKQGAVVKFAGRVTG 823

Query: 788 -FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
              P     D +R  L     +  ++ + I+ ++ +  R+TLS + S
Sbjct: 824 TLHPLDTTDDFER--LIAMPAMDSTITAAIIVIDQKAKRLTLSTRPS 868



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 191/800 (23%), Positives = 345/800 (43%), Gaps = 120/800 (15%)

Query: 484  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM------SEFEIV 537
            +A +  V   S V PG +V+  V +V   G  VQ  G  +    L H+      SEF++ 
Sbjct: 328  NAIQKEVTNVSSVLPGTLVQALVTSVVPSGLAVQILGSFEGTIDLYHLPSSTSASEFKV- 386

Query: 538  KPGKKFKVGAELVFRVLGVKSKR---------ITVTHKKTLVKSKLAILSSYAEATDRLI 588
              GKK K  A +++ V G    R         +T+  KK   +S  ++  S+   T  ++
Sbjct: 387  --GKKLK--ARILYDVAGTSPPRFALSLKEHVLTLDAKKRSAESGQSVQESFPVGT--ML 440

Query: 589  THGWITKIE-KHGCFVRFYNGVQGFAPRSELGLD--PGCEPSS-MYHVGQVVKCRIMSSI 644
                + ++E + G  V     ++GF   S +  D  P    +S  + +G   + R++   
Sbjct: 441  KSVKVKRVEPERGLVVGVEEDLEGFVHISHVSDDHVPSLSSNSGPWKIGTSRQARVVGFH 500

Query: 645  PASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                 + LSF  +P+ +S+     D V +G LV G V  +T + + V +   G     I 
Sbjct: 501  ALDGILQLSF--RPSVLSQKFLRVDDVTVGELVKGTVKKLTESCLFVSI--NGNVDAMIW 556

Query: 701  TEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
              H AD  L+H    +   KPG     ++LV++ +   ++L+AK +L+ S   + S    
Sbjct: 557  PNHYADIMLKHP---QKRFKPGGTLKCRVLVVEPDRKRIMLTAKKTLVESDLPILSKIED 613

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
                 V+HG +C ++E    V F   L    P  +  +    +L+++Y VG+S++  I+ 
Sbjct: 614  AEAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSETPVTNLAESYAVGKSLKVCIVS 673

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
            V+ E GRI  S++Q+   ST  +                        +K VE   +G  +
Sbjct: 674  VDREAGRIVASIRQALGESTIGN------------------------IKSVE---VGQTV 706

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938
             G V E +   VV+  E  S     I+ H +A    ++   ++++I      E++ DL +
Sbjct: 707  SGTVQEVHGDNVVLILEP-SRARALISLHNIANRRRKTVEQLRSSI---TSGEKMEDLVV 762

Query: 939  KTVFIDRFREANSNRQAQKKKRKREASKDLGV----HQTVNAIVEIVKENYLVLSLPEYN 994
             +  +D+     +NR + K    ++   DL         V  +V++ K+  +V       
Sbjct: 763  VSRNLDKGIVIVANRPSPKASSSKQEPIDLSALSEGSTVVGRVVKLGKQGAVVKFAGRVT 822

Query: 995  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR 1054
             ++     +D            + + +IA + A+ S+ TA  +++  KA   T ++   R
Sbjct: 823  GTLHPLDTTD------------DFERLIA-MPAMDSTITAAIIVIDQKAKRLTLSTRPSR 869

Query: 1055 ----AKKK---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
                AK+K             VG  ++  +  +    + +  G G   R+ I E+ D+  
Sbjct: 870  LDQNAKEKVVDLEVPGIEDLKVGQRLRGFVKNVAEHGVFVTIGRGIDARVQIKELYDE-- 927

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
              V++  S FK  Q V+ RI+  + +   KK    E++ + S  T+ E   KLL    D+
Sbjct: 928  -YVKDWKSGFKENQLVSGRILGINRE---KKQV--EMTFR-STKTLPEKPEKLL---SDL 977

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ-----RRFHIGKAV 1216
            + GQ+V G V KV++    ++I     A+L  L    E ++ ++       R F  G  V
Sbjct: 978  TEGQKVDGKVKKVEDYGIFISID---GAKLSGLCHKSEITDNKDADVTLALRHFREGDPV 1034

Query: 1217 TGHVLSINKEKKLLRLVLRP 1236
               VLS++ EK+ + L L+P
Sbjct: 1035 KAIVLSVDTEKRHISLGLKP 1054



 Score =  107 bits (266), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 210/921 (22%), Positives = 386/921 (41%), Gaps = 164/921 (17%)

Query: 627  SSMYHVGQVVKCRIMSSIP------------------ASRRINLSFMMKPTRVS----ED 664
            + ++  GQ V+  + S  P                  ASRR+ LS +  P +V+    + 
Sbjct: 194  TDLFQTGQYVRAVVSSVKPPGSTDGQIFSHSKDGVEKASRRVELSLI--PEQVNSGLNKS 251

Query: 665  DLVKLGSLVSGVVDVVTPNAVVVYVI--AKGYSKGTIPTEHLADHLEHATVMKSVI-KPG 721
            DL K  +L + V  V     V+   +    G+ +     +  +D     ++M +++ K G
Sbjct: 252  DLKKGHTLCAAVKSVEDHGYVLNIGLPDVSGFLRFKAQKDGSSDRRRTGSLMNTIVEKMG 311

Query: 722  YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
             +    ++ D+ES            N+ Q+  ++ S + P ++V   V +++ +G  V+ 
Sbjct: 312  DDGRTCILTDSESD---------FKNAIQKEVTNVSSVLPGTLVQALVTSVVPSGLAVQI 362

Query: 782  LGRLTG-----FAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV-NSETGRITLSLKQSC 834
            LG   G       P S +        +  + VG+ +++ IL DV  +   R  LSLK   
Sbjct: 363  LGSFEGTIDLYHLPSSTS--------ASEFKVGKKLKARILYDVAGTSPPRFALSLK--- 411

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG-KVHE-SNDFGVVV 892
                      EH L    +   + S  +G  ++  E F +G++++  KV     + G+VV
Sbjct: 412  ----------EHVLT---LDAKKRSAESGQSVQ--ESFPVGTMLKSVKVKRVEPERGLVV 456

Query: 893  SFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLK-TV 941
              EE  D+ GF+    ++   V S          G+  QA ++     + ++ LS + +V
Sbjct: 457  GVEE--DLEGFVHISHVSDDHVPSLSSNSGPWKIGTSRQARVVGFHALDGILQLSFRPSV 514

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
               +F   +                D+ V + V   V+ + E+ L +S+     ++ + +
Sbjct: 515  LSQKFLRVD----------------DVTVGELVKGTVKKLTESCLFVSINGNVDAMIWPN 558

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 1061
                   K PQK+F  G ++   V+ +       R  ++L A      S      K    
Sbjct: 559  HYADIMLKHPQKRFKPGGTLKCRVLVV----EPDRKRIMLTAKKTLVESDLPILSKIEDA 614

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            + G ++   I ++    L ++F       +   EV++     V NL  ++ +G+++   I
Sbjct: 615  EAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSE---TPVTNLAESYAVGKSLKVCI 671

Query: 1122 IAKSNKPDMKKSFLWELSIKPSM--LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
            ++       +++     SI+ ++   T+  I S        V +GQ V+G V +V  +  
Sbjct: 672  VSVD-----REAGRIVASIRQALGESTIGNIKS--------VEVGQTVSGTVQEVHGDNV 718

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH---VLSINKEKKLLRLVLRP 1236
            +L +       L  L +          Q R  I          V+S N +K ++ +  RP
Sbjct: 719  VLILEPSRARALISLHNIANRRRKTVEQLRSSITSGEKMEDLVVVSRNLDKGIVIVANRP 778

Query: 1237 FQDGISDKT--VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                 S K   +D+S       + EG  V GR+ K+  G  G VV+    + G +H    
Sbjct: 779  SPKASSSKQEPIDLSA------LSEGSTVVGRVVKL--GKQGAVVKFAGRVTGTLH---- 826

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDE-GQFVKCKVLEISRTVRGTFHVELSLRSS-LDGMS 1352
                   PL   D+  F+ L         +   ++ I +  +    + LS R S LD   
Sbjct: 827  -------PLDTTDD--FERLIAMPAMDSTITAAIIVIDQKAK---RLTLSTRPSRLD--- 871

Query: 1353 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1412
              N+ +   D++ PG     IEDL     ++G+VKNV   G F+ + R +DA+V +  L 
Sbjct: 872  -QNAKEKVVDLEVPG-----IEDLKVGQRLRGFVKNVAEHGVFVTIGRGIDARVQIKELY 925

Query: 1413 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1472
            D YV+  +  F   +LV+GR+L +    K+VE+T ++  ++T  +     LS+L  G  V
Sbjct: 926  DEYVKDWKSGFKENQLVSGRILGINREKKQVEMTFRS--TKTLPEKPEKLLSDLTEGQKV 983

Query: 1473 IGQIKRVESYGLFITIENTNL 1493
             G++K+VE YG+FI+I+   L
Sbjct: 984  DGKVKKVEDYGIFISIDGAKL 1004



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 94/448 (20%), Positives = 178/448 (39%), Gaps = 86/448 (19%)

Query: 128  LKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIF 187
            +++  AGM + G + +V EK LV+     LR +  A +  +  + N  E+         +
Sbjct: 611  IEDAEAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSETPVTNLAES---------Y 661

Query: 188  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL-SLETVQEGMVLTAYVKSIEDH 246
             VG+ +   ++ +D   +E G+  I  S+R +L    + ++++V+ G  ++  V+ +   
Sbjct: 662  AVGKSLKVCIVSVD---REAGR--IVASIRQALGESTIGNIKSVEVGQTVSGTVQEVHGD 716

Query: 247  GYILHFGLPSFTGFLPRNNLA-------ENSGIDVKPGLLLQGVV---RSIDRTRKVVYL 296
              +L          +  +N+A       E     +  G  ++ +V   R++D+   +V +
Sbjct: 717  NVVLILEPSRARALISLHNIANRRRKTVEQLRSSITSGEKMEDLVVVSRNLDKG--IVIV 774

Query: 297  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV------D 350
            ++ P    K  +   + I +  L  G  V  RV  + + G ++ F    TGT+      D
Sbjct: 775  ANRPS--PKASSSKQEPIDLSALSEGSTVVGRVVKLGKQGAVVKFAGRVTGTLHPLDTTD 832

Query: 351  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV----- 405
             F      P  +          + A I+ +D  ++ + L+  P  L   A    V     
Sbjct: 833  DFERLIAMPAMD--------STITAAIIVIDQKAKRLTLSTRPSRLDQNAKEKVVDLEVP 884

Query: 406  -----KVG--------DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                 KVG        ++ +    V + RG+              A V I ++ +E V+ 
Sbjct: 885  GIEDLKVGQRLRGFVKNVAEHGVFVTIGRGID-------------ARVQIKELYDEYVKD 931

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAF-----EGLVFTHSDVKPGMVVKGKVI 507
             +  +KE   V  RILG    +       +++       E L+   SD+  G  V GKV 
Sbjct: 932  WKSGFKENQLVSGRILGINREKKQVEMTFRSTKTLPEKPEKLL---SDLTEGQKVDGKVK 988

Query: 508  AVDSFGAIVQFPGG-VKALCPLPHMSEF 534
             V+ +G  +   G  +  LC   H SE 
Sbjct: 989  KVEDYGIFISIDGAKLSGLC---HKSEI 1013


>gi|19075390|ref|NP_587890.1| U3 snoRNP-associated protein Rrp5 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74582568|sp|O74835.1|RRP5_SCHPO RecName: Full=rRNA biogenesis protein rrp5; AltName: Full=Ribosomal
           RNA-processing protein 5; AltName: Full=U3 small
           nucleolar RNA-associated protein rrp5; Short=U3
           snoRNA-associated protein rrp5
 gi|3650378|emb|CAA21087.1| U3 snoRNP-associated protein Rrp5 (predicted) [Schizosaccharomyces
           pombe]
          Length = 1690

 Score =  227 bits (578), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 227/818 (27%), Positives = 373/818 (45%), Gaps = 62/818 (7%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG  SLT  E  E   E   +F     G  + +KK + K +     +  +L +    
Sbjct: 35  FPRGGASSLTPLEYKEAVLEAKKDFMESASGTAELSKKTRPKKKGSKKSSKSELDN---- 90

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADA 166
                L  +   +  KNI+ G  + G +A++N  DL + LP  L G         + +D 
Sbjct: 91  --EENLKVHIQSLRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDR 148

Query: 167 LDPILDNEIEAN-----EDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLS 215
           LD I DN  E N     ED L     L  ++ VGQ V   V  L  ++  + GKR I LS
Sbjct: 149 LDSI-DNHAEDNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELS 207

Query: 216 LRLSLLYKGLSLETVQ--EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
           L+      G + E      G ++ A V SIEDHG +   G+ ++TGFL + ++  N    
Sbjct: 208 LKPQDA-NGSAPEAADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPF 264

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSI 332
           V+   LL  V+   DR   + +LS     ++   TK L+ + S+  ++PG  ++  V  I
Sbjct: 265 VEGQSLLCSVISKEDR---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDI 316

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG- 388
            E+GV+  ++     T DI+H  +     + ++ +   K V AR+LFV   DP   AV  
Sbjct: 317 KESGVIAKYMGVVDVTSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSF 375

Query: 389 ----LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-IS 443
               LT N +   N   P  + +G I + +KV  V   LG+  D+    +S  A+++ +S
Sbjct: 376 LPHVLTFN-FATPNTPHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLS 434

Query: 444 DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           D     +      YK  S    RI+ + +++ L     + S          D++ G  V 
Sbjct: 435 DKKVAGISPNSGPYKVDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVD 494

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRI 561
           G +  +   G +V    G+  L P  HM++  +  P ++FKVG+ +  RVL   V  KR+
Sbjct: 495 GTIAKLIPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRV 554

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
            +T KK+L+ + L ++  Y +AT    T G + +I + G  V FYN V+ F P SE+   
Sbjct: 555 LLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEA 614

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVD 678
              +    + VGQ +   I+S  P +R++ +    +     R+   + +K GS++SG+V 
Sbjct: 615 YIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVL 674

Query: 679 VVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
             T ++V+V +  K    G I    L D  L   + + + ++   +  ++LVL  ++S  
Sbjct: 675 QKTEDSVIVDLGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKK 732

Query: 738 L--LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
           L  LS K SL+ +A++  +P + + +       G+V N    G FV F   L    P++ 
Sbjct: 733 LISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAY 792

Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S  Y   QSV    L V     +  +S K
Sbjct: 793 ISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFK 830



 Score =  167 bits (422), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 211/937 (22%), Positives = 381/937 (40%), Gaps = 154/937 (16%)

Query: 609  VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 657
            + GFA  S L      G+ P   P   Y V    + RI++         LSF       +
Sbjct: 424  ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480

Query: 658  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 713
              R+ +   +++G  V G +  + P  +VV  I++G + G +P+ H+AD      E    
Sbjct: 481  FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
            + S +K      ++L  +     +LL+ K SL+N+   L  D     P +   G +  I 
Sbjct: 536  VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            E G  V F   +  F P S+  +    D  + + VGQ++   I+  + E  ++ +  ++ 
Sbjct: 591  EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
               S DA                         L+  E    GSV+ G V +  +  V+V 
Sbjct: 651  ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 942
              +   V G IT  QL    +   S +           +  +L    +++L+ LSLK   
Sbjct: 685  LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742

Query: 943  IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
            ++  +E   NR        +E  K  G      T    VE    + LV  +P+   S  Y
Sbjct: 743  VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 1047
              V        P   +   QSV    +++            P +    + +  +++  + 
Sbjct: 798  VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 1105
            +    +  KK   Y  G +  A +T  K  +L +      HGR+ ++EV D+   +V+  
Sbjct: 850  DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1155
                 F  G  +  R++   +  + K          K FL ELS++PS+L +     K  
Sbjct: 910  KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
              E     G  VTG+V  V  E   ++++  +  ++ ILD   +  EL   Q+ F +GKA
Sbjct: 967  --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +  +V  +N E  +    + P Q G  + T              G  + G+++ +     
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
            G ++Q+  H+ GRV   ++           +D+    P + +     V   VL +    R
Sbjct: 1067 GAILQLPGHMSGRVSRIDM-----------FDDYDILPETKFTRNNLVGVCVLSVDVPNR 1115

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                           +S+ NS   S  V+   K +  ++DL    I +G+V NV ++G F
Sbjct: 1116 KV------------ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLF 1163

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            + +   L A+V +  L D +++  +  F + +LV G ++ ++  SKR+E++LK S  + +
Sbjct: 1164 VTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQSKIKDS 1223

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            S+      +++ VG  + G + +V  YG+ I I+ T+
Sbjct: 1224 SEI-TKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTD 1259



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 194/911 (21%), Positives = 349/911 (38%), Gaps = 174/911 (19%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + +++I  G  + G +A++  + +V+ +  G+ GL  +    D  L              
Sbjct: 482  LRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL---------QFPER 532

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSL----ETVQEGMVLTAYVK 241
             F VG  V C VL  +     + ++++ L+L+ SLL   L L    E    G      + 
Sbjct: 533  RFKVGSSVKCRVLSTN-----VLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLA 587

Query: 242  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
             I + G I+ F   S   FLP + ++E    D +           + +T  V  +S DP+
Sbjct: 588  RIFEDGAIVEF-YNSVRAFLPVSEMSEAYIRDAREHF-------KVGQTLSVTIVSCDPE 639

Query: 302  TVSKCV-----TKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
                 V     + D K +   + +  G ++S  V    E+ V++      TG + +  L 
Sbjct: 640  NRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLC 699

Query: 356  NTFPTTNWKNDYNQHKKVNAR-----------ILFVDPTSRAVGLTLNPYLLH----NRA 400
            +         D N+  KV  +           +L  D + + + L+L   L+     NR 
Sbjct: 700  D--------GDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRM 751

Query: 401  PPSHVKVGDIYDQSK---VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
            P   + + D+ +  K    VR     G+ ++     V   A V  + ++EE V      Y
Sbjct: 752  P---INITDLKEGIKYFGFVRNATTFGVFVEFCDGLV---ALVPKAYISEEYVPVPSAVY 805

Query: 458  KEGSCVRVRIL--------GFRHLEGLATGILKASAF------------EGLVFTHSDVK 497
            K    V    L         F   + LA    KA  F            E +  T+ D  
Sbjct: 806  KPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTY-DYV 864

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIV---KPGKKFKVGAELVFR 552
             G +    V +  +    V     V     +  + +   EIV   KP K+F  G ++  R
Sbjct: 865  AGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIRVR 924

Query: 553  VLGVKSKR----ITVTHK-------KTLVKSKLAILSSYAEATDRLI----THGWITKIE 597
            VLG+   R    + ++H+       +  V+  +  +  ++    +        G++  + 
Sbjct: 925  VLGIHDSRNHKFLPISHRVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFVNNVS 984

Query: 598  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSF 654
            K   +V     V G  P  +L  D   E +S+   + +G+ +KC +++   A   I LS 
Sbjct: 985  KECVWVSLTPSVNGRIPILDLTTDVK-ELNSLQKHFFLGKAIKCYVVN---AEDSITLS- 1039

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             + P +  E+ L     LV  V +V    A++      G+  G +    + D  +     
Sbjct: 1040 AIGPLQGFEN-LTPGSRLVGKVTNVNEAGAILQL---PGHMSGRVSRIDMFDDYD----- 1090

Query: 715  KSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV--- 764
               I P  +F +       +L +D  +  + LSA+ S     Q  P +      NSV   
Sbjct: 1091 ---ILPETKFTRNNLVGVCVLSVDVPNRKVALSARNS---RTQSQPVEIKDKEINSVDDL 1144

Query: 765  -----VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
                   G+VCN+   G FV     L       +  D    D    ++V Q V+ +I+ +
Sbjct: 1145 KIGDICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGI 1204

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
            ++++ RI +SLKQS     D+S + + F                          +GS ++
Sbjct: 1205 DNDSKRIEMSLKQSKIK--DSSEITKTF----------------------ADIAVGSNLD 1240

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAER 932
            G V +  D+GV++  +   ++ G     ++A A V        SG  ++A +LDV   +R
Sbjct: 1241 GTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKR 1300

Query: 933  LVDLSLKTVFI 943
             + L LK+ + 
Sbjct: 1301 RIALGLKSSYF 1311



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            L+  E+L+P   + G V NV   G  + L   +  +V   ++ D Y   PE +F    LV
Sbjct: 1044 LQGFENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLV 1103

Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQ------SEINNLSNLHVGDIVIGQIKRVESYG 1483
               VLSV+  +++V   L   +SRT SQ       EIN++ +L +GDI  G +  V + G
Sbjct: 1104 GVCVLSVDVPNRKV--ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQG 1161

Query: 1484 LFITIENTNLVRNK 1497
            LF+TI +  + R K
Sbjct: 1162 LFVTIGHNLIARVK 1175



 Score = 48.5 bits (114), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 122/523 (23%), Positives = 198/523 (37%), Gaps = 113/523 (21%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP----------RSKAVDG---------- 797
            +I P S++ G +  I      V     LTG+ P          R  ++D           
Sbjct: 105  NITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEE 164

Query: 798  -----QRADLSKTYYVGQSVRSNILDVNSE----TGR--ITLSLKQSCCSSTDASFMQEH 846
                 Q  DL   Y VGQ VR ++  + SE    TG+  I LSLK       DA      
Sbjct: 165  EDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQ-----DA------ 213

Query: 847  FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY-GFIT 905
                           NGS  +  + F+ GS+I+  V    D G+V  F+   + Y GF++
Sbjct: 214  ---------------NGSAPEAAD-FVAGSMIQAVVSSIEDHGIV--FDIGINNYTGFLS 255

Query: 906  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
               +       G  +  ++  ++K +R+  LSL                         ++
Sbjct: 256  KKHINDFPFVEGQSLLCSV--ISKEDRIFHLSLTAT----------------------ST 291

Query: 966  KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF---PQK------QFL 1016
            K L V  +V AI+     N LV  + E      Y  V D  +  +   P K      +F 
Sbjct: 292  KALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYHSSPVKGEDLEDKFQ 351

Query: 1017 NGQSVIATVM-ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 1075
              +SV A V+  +P       +  L   +  T   ++         D+G +V A      
Sbjct: 352  LAKSVPARVLFVIPGDPPKIAVSFLPHVL--TFNFATPNTPHPDQLDIGFIVNAAKVTYV 409

Query: 1076 PLELRLKFGIG---FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
               L +   +G     G  HI+ ++D K   +      +K+  T  ARII  S   +   
Sbjct: 410  SSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEARIINYSYVDN--- 466

Query: 1133 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
              L+ LS + S+L      ++      D+ +GQ V G + K+  +  ++TIS  +     
Sbjct: 467  --LYILSFQQSVL------NQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGING--L 516

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            +  +      LQ  +RRF +G +V   VLS N  +K + L L+
Sbjct: 517  VPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLK 559


>gi|242817707|ref|XP_002487008.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218713473|gb|EED12897.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1810

 Score =  226 bits (577), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 332/1398 (23%), Positives = 603/1398 (43%), Gaps = 136/1398 (9%)

Query: 54   FPRGGGHSLTQRERDEIH--AEVDAEFE---------AVERGLHKKNKKKKKKTERKANE 102
            FPRGGG  LT  ER +I   A  D  FE          ++ G+  ++   + + ++ A  
Sbjct: 65   FPRGGGSVLTPLERKQIQIQATRDVLFEQKRSGKSTEGLDDGISDEDIDMQDEGKKPATT 124

Query: 103  TVDDLGSLFGDGISGKLPRYANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
                         S K  +   ++   + K ++ G  + G V  +N  D+ + LP  L G
Sbjct: 125  KKSRKSKNKKSRDSEKKTKEGVRVEGLSFKRLTIGTMVLGQVTSINSHDIGLALPNNLTG 184

Query: 160  ---LARAADALDPILDNEIEANEDN---------LLPT-IFHVGQLVSCIVLQLDDDKKE 206
               L   ++  D  ++N + A ++N         L P+  F+VGQ +   V        E
Sbjct: 185  YVPLTAISEVFDKKIENVLNAEDENEDDDSEEDSLDPSDYFYVGQYLRAYVTSTGSSAVE 244

Query: 207  IG----KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGF 260
             G    K+KI LSL       GLS   + EG ++ A V SIEDHG ++  GL      GF
Sbjct: 245  AGTAKIKKKIELSLDPRQANTGLSESDLVEGAMVQASVASIEDHGCVMDIGLGKKGAKGF 304

Query: 261  LPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLV 320
            +   + A  S I  K G +L  +V  ++ +R +  LSS   T +   +      +I   +
Sbjct: 305  MASTDEAIQSNI--KEGAVLLCIVTGVNASRTIFQLSSKLQTAASPKSVLKSAPTIQTFL 362

Query: 321  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
            PG      + S+ E G++   +     TVD  H      + N    Y    K+ ARI   
Sbjct: 363  PGTAAEILLTSVTETGLVGKIMGLLDATVDFVHSGANSGSFNLTTKYQLGAKIKARITCT 422

Query: 381  DPTSRA--VGLTLNPYLLHNRAPPSHVKV-----GDIYDQSKVVRVDRGLGLLLDIPSTP 433
             P +    VG ++   +L  R  PS  +V     G I D ++V  V+ GLGL ++  S  
Sbjct: 423  FPAAEPFKVGASVLENILEWRRTPSTQEVSSPSIGTILD-ARVTTVEPGLGLYVEFGS-- 479

Query: 434  VSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
            +    +V IS VA+   E +   +  +K GS  + RI+G   ++ L     +    +   
Sbjct: 480  LKHLGFVHISRVADGTVESISAEQGAFKTGSTHKARIIGHNSVDNLYLLSFEKKVIDQPY 539

Query: 491  FTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 545
                DV  G VVKGK+    I  +   G I+    G+  L P  H ++  +  P KKF+ 
Sbjct: 540  IRLEDVPLGEVVKGKIEKLLIGPEGIDGLILSIADGITGLVPSMHFADTVLQHPEKKFRE 599

Query: 546  GAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
            G  +  RVL V  + +++ +T KK+L+ S  AI   Y +      + G +  I+ +G  V
Sbjct: 600  GLAISARVLSVNLEKRQMRLTLKKSLLNSDSAIWKDYNDIVPGQQSPGTLINIQPNGATV 659

Query: 604  RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
            +FY  V+GF P SE+      +PS  +  GQVV    +S   +S ++ +S    P+  SE
Sbjct: 660  QFYGTVRGFLPVSEMSEAYIKDPSQHFRKGQVVNVHAISVDISSDKLVVS-CKDPSTSSE 718

Query: 664  D-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSV 717
                    ++ G  V+G V   + + +++ +   G +   +   HL D     A    + 
Sbjct: 719  AYREAFSEIRPGVSVTGTVFEKSSDDLLLKLDKYGVT-ARLSAVHLVDGDASKAASAFAK 777

Query: 718  IKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNII 773
            I+ G +   LLVL+ +  + L+  + K SL  + ++  LPS    +   + V G+V    
Sbjct: 778  IRVGQKLSDLLVLEAKRVHRLIKVTHKPSLRKALKKNSLPSTFEELEVGTEVTGFVRGTT 837

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDVNSETGRITLSLKQ 832
              G FV FLG L G  PR + VD + +++    +Y  Q++ + I  ++ +  R TL+++ 
Sbjct: 838  SHGVFVEFLGGLNGLLPR-RLVDDEHSNMPDFGFYPSQALTATIHQIDEDHRRFTLTMRP 896

Query: 833  -SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE------- 884
                +++  +  +E  L E++    +        ++ V  + +G V + ++         
Sbjct: 897  VELPTASRQAQSKERPLPEDE----KPVNPVDESIQTVAEYTVGKVTKARILSIKETQIN 952

Query: 885  ---SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLK 939
               +++    +   E  D +  I   +          ++   IL +  A++ R + +S +
Sbjct: 953  VVLADNLQGRIDVSEVFDKWEDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFLPISHR 1012

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIG 998
            T     +  +         +RK  + + + V  ++   V  + ++YL +SL P     + 
Sbjct: 1013 TSKHPVYELSAKPSFITAGERKPLSLEQVKVGSSMIGFVNNINDDYLWISLSPNVRGRVR 1072

Query: 999  YASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
               +S D +T    +  +  G ++   V  +   S  G L L +K+ S  E S  K +K 
Sbjct: 1073 AIDLSDDLSTLTDLESNYPMGSALKVRVTGV--DSDKGHLDLSVKSGSTRELSFDKLSK- 1129

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
                  G ++   +T++   ++ ++      G + IT++ DD S +  ++   +K  + +
Sbjct: 1130 ------GMILPGRVTKVTEKQIIMQLSDSLVGAVTITDMADDYSKIDTSI---YKKNEIL 1180

Query: 1118 TARII--AKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYK 1173
             A II   KSN    KK F   LS++PS +  S   +  + +     + +   V G+V K
Sbjct: 1181 RACIIDVDKSN----KKIF---LSLRPSKVLSSTLPVRDREITSIDQLKVNDIVRGFVRK 1233

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V +    +T+   + A + I D     S L+E++  F   + V G ++ +++E K L++ 
Sbjct: 1234 VADNGLFVTLGHSVSAYVRISD--LSDSYLKEWKDEFQADQLVKGRIIFVDQENKRLQMS 1291

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
            L+        ++V  SN      I +   G IV G++ K+      +V+    ++ G  H
Sbjct: 1292 LK--------ESVLDSNYKTPITIRDLKPGQIVTGKVRKVEDFGAFIVIDRSANVSGLCH 1343

Query: 1291 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS-RTVRGTFHVELSLRSSLD 1349
             +++    +            D    ++ G  VK K+L+I  +  + +F ++ S     +
Sbjct: 1344 RSQMAEQNID-----------DARKLFEAGDIVKAKILKIDPKQEKISFGLKASYFKDEE 1392

Query: 1350 GMSSTNSSDLSTDVDTPG 1367
            G+ S   SD    +D  G
Sbjct: 1393 GLDSEEGSDEDLSMDEAG 1410



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 210/907 (23%), Positives = 400/907 (44%), Gaps = 122/907 (13%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPN 683
            +  G   K RI+          LSF  K    P    ED  V LG +V G ++  ++ P 
Sbjct: 506  FKTGSTHKARIIGHNSVDNLYLLSFEKKVIDQPYIRLED--VPLGEVVKGKIEKLLIGPE 563

Query: 684  AV--VVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
             +  ++  IA G + G +P+ H AD  L+H    +   + G     ++L ++ E   + L
Sbjct: 564  GIDGLILSIADGIT-GLVPSMHFADTVLQHP---EKKFREGLAISARVLSVNLEKRQMRL 619

Query: 740  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            + K SL+NS   +  D + I P     G + NI   G  V+F G + GF P S+  +   
Sbjct: 620  TLKKSLLNSDSAIWKDYNDIVPGQQSPGTLINIQPNGATVQFYGTVRGFLPVSEMSEAYI 679

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 859
             D S+ +  GQ V  + + V+  + ++ +S K    SS                   ++ 
Sbjct: 680  KDPSQHFRKGQVVNVHAISVDISSDKLVVSCKDPSTSS-------------------EAY 720

Query: 860  KHNGSELK---WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
            +   SE++    V G +     +  + + + +GV         V G  +    A A +  
Sbjct: 721  REAFSEIRPGVSVTGTVFEKSSDDLLLKLDKYGVTARLSAVHLVDGDASKAASAFAKIRV 780

Query: 917  GSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 975
            G  +    +L+  +  RL+ ++ K           S R+A KK       ++L V   V 
Sbjct: 781  GQKLSDLLVLEAKRVHRLIKVTHKP----------SLRKALKKNSLPSTFEELEVGTEVT 830

Query: 976  AIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 1034
              V         V  L   N  +    V D ++   P   F   Q++ AT+  +      
Sbjct: 831  GFVRGTTSHGVFVEFLGGLNGLLPRRLVDDEHSN-MPDFGFYPSQALTATIHQIDEDHR- 888

Query: 1035 GRLLLLLKAISETETSSSKRAKKK-------------------SSYDVGSLVQAEITEIK 1075
             R  L ++ +     S   ++K++                   + Y VG + +A I  IK
Sbjct: 889  -RFTLTMRPVELPTASRQAQSKERPLPEDEKPVNPVDESIQTVAEYTVGKVTKARILSIK 947

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK-- 1127
              ++ +       GRI ++EV D   ++ +       F++ + +  RI+    A+S++  
Sbjct: 948  ETQINVVLADNLQGRIDVSEVFDKWEDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFL 1007

Query: 1128 ---PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                   K  ++ELS KPS +T  E    L  E+  V +G  + G+V  +++++  +++S
Sbjct: 1008 PISHRTSKHPVYELSAKPSFITAGE-RKPLSLEQ--VKVGSSMIGFVNNINDDYLWISLS 1064

Query: 1185 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             +++ ++  +D + + S L + +  + +G A+   V  ++ +K  L L ++      S  
Sbjct: 1065 PNVRGRVRAIDLSDDLSTLTDLESNYPMGSALKVRVTGVDSDKGHLDLSVK------SGS 1118

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T ++S D +     +G I+ GR++K+      +++Q+   L G V  T++     +D  S
Sbjct: 1119 TRELSFDKLS----KGMILPGRVTKVTEK--QIIMQLSDSLVGAVTITDM-----ADDYS 1167

Query: 1305 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1364
              D       S Y + + ++  ++++ ++ +  F   LSLR S           LS+ + 
Sbjct: 1168 KID------TSIYKKNEILRACIIDVDKSNKKIF---LSLRPS---------KVLSSTLP 1209

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1424
               + +  I+ L  N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF 
Sbjct: 1210 VRDREITSIDQLKVNDIVRGFVRKVADNGLFVTLGHSVSAYVRISDLSDSYLKEWKDEFQ 1269

Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1484
              +LV GR++ V+  +KR++++LK S   +  ++ I  + +L  G IV G++++VE +G 
Sbjct: 1270 ADQLVKGRIIFVDQENKRLQMSLKESVLDSNYKTPI-TIRDLKPGQIVTGKVRKVEDFGA 1328

Query: 1485 FITIENT 1491
            FI I+ +
Sbjct: 1329 FIVIDRS 1335



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 54/393 (13%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VGS +   +  I    L +       GR+   +++DD S +  +L SN+ +G  +  R+ 
Sbjct: 1043 VGSSMIGFVNNINDDYLWISLSPNVRGRVRAIDLSDDLSTLT-DLESNYPMGSALKVRVT 1101

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
                  D  K  L +LS+K      S    +L F++  +S G  + G V KV  +  ++ 
Sbjct: 1102 G----VDSDKGHL-DLSVK------SGSTRELSFDK--LSKGMILPGRVTKVTEKQIIMQ 1148

Query: 1183 ISRHLKAQLFILDSAYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
            +S  L   + I D A + S++     ++  I +A    ++ ++K  K + L LRP +  +
Sbjct: 1149 LSDSLVGAVTITDMADDYSKIDTSIYKKNEILRAC---IIDVDKSNKKIFLSLRPSK--V 1203

Query: 1242 SDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
               T+ + +  + +   +   DIV G + K+     GL V +G  +   V  ++L +  +
Sbjct: 1204 LSSTLPVRDREITSIDQLKVNDIVRGFVRKVADN--GLFVTLGHSVSAYVRISDLSDSYL 1261

Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1359
             +     DE Q D        Q VK +++ + +  +    +++SL+ S+          L
Sbjct: 1262 KE---WKDEFQAD--------QLVKGRIIFVDQENK---RLQMSLKESV----------L 1297

Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVE 1417
             ++  TP      I DL P  IV G V+ V   G FI++ R  +   L   S +++  ++
Sbjct: 1298 DSNYKTP----ITIRDLKPGQIVTGKVRKVEDFGAFIVIDRSANVSGLCHRSQMAEQNID 1353

Query: 1418 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
               K F  G +V  ++L ++P  +++   LK S
Sbjct: 1354 DARKLFEAGDIVKAKILKIDPKQEKISFGLKAS 1386


>gi|302698227|ref|XP_003038792.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
 gi|300112489|gb|EFJ03890.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
          Length = 1461

 Score =  226 bits (576), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 221/854 (25%), Positives = 374/854 (43%), Gaps = 100/854 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGGG S T  E   I AE   +A       G  +  K+K+K++E K  +   D     
Sbjct: 47  FPRGGGSSFTPLEVKAIRAEAVKEANDALFNEGQQESKKRKRKQSESKKPKA--DKAEK- 103

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LA 161
               SGK+      +  K +  G K+ G +  V    L++ LP  L G          L 
Sbjct: 104 ----SGKI--RIEHLNYKRMIPGQKILGQIISVQPLALIVSLPNQLLGHVPITNISTQLT 157

Query: 162 RAADALDPILDNEIEANEDNLLPT---IFHVGQLVSCIVLQL----DDDKKEIGK----- 209
            A DA+D    ++ +A     +P    IFH GQ V  +V  +      D   IG+     
Sbjct: 158 AALDAMDVDESDDEDAPAQTAVPDLDDIFHPGQYVRAVVATVHAPGTTDLSGIGRSRDEV 217

Query: 210 ----RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNN 265
               R++ LSL    +  G+    ++EG  LTA V+S+EDHGYI+  G+P  +GFL   +
Sbjct: 218 VRASRRVELSLVPGKVNAGVQKGDLKEGFTLTAAVQSVEDHGYIVDLGIPDVSGFLSFKD 277

Query: 266 LAENSGID----VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP 321
               S  D    +  G L+   V  + +  +   +++DP   +     ++  ++   ++P
Sbjct: 278 APTTSTDDEDAKLPVGSLVNATVLKLSKNGRTCNVTADPAKFTSSFATEVTNVAA--VLP 335

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-V 380
           G +V + + +    G+ L  + +F GT+D  HL+         ND+N  KK+ AR+L+  
Sbjct: 336 GTLVQSLITAASPTGLNLQVIGFFDGTIDEVHLRQ-----GSSNDWNVGKKIKARVLYNY 390

Query: 381 DPTSRAVGLTLNPYLL-----------------HNRAPPSHVKVGDIYDQSKVVRVDRGL 423
             +   + L LN +++                   R P     +G   + +K+VRV+   
Sbjct: 391 SDSPPKLALALNEHIIALDSRKIKNPDNTMTDFRERYP-----IGRTVENAKIVRVEPER 445

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGIL 481
           GL++ +         +V IS  ++E V  L     +K GS  R R+ G+  L+GL    +
Sbjct: 446 GLIVQLEP---GVEGFVHISHTSDEHVPSLSAAGAHKIGSTHRARVTGYFPLDGLLQLSM 502

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           K S  E      SDV+PG +VKG +  +      V   G +  +    H ++  + +PGK
Sbjct: 503 KPSILEQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLSGNMDGVVWPNHYADIALKQPGK 562

Query: 542 KFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           +FK GA +  RVL V    KRI++T KKTL+ S L +L+ Y +A   ++TH  + K+   
Sbjct: 563 RFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLPVLARYEDAQVGMVTHAVVFKVFDK 622

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--- 656
              V FYN ++   P  +    P    +  + VG+ VK R+ S  P  RRI  S      
Sbjct: 623 HLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIVASIRQAAG 682

Query: 657 --KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE--HAT 712
             +P  ++    V++G ++ G V  V     ++ +   G  +  +   ++A  L    A 
Sbjct: 683 ASQPVPLT---AVEIGDILPGKVTEVHKEHALLTLQPSGV-RALVSLANVA-MLRGVSAA 737

Query: 713 VMKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQQLPSDA-------SHIHPNS 763
            +++ ++PG     L+V++   E   +++S K S   + +   + A              
Sbjct: 738 QVRTALQPGEVLPDLVVVERSPEKGFVIVSGKPSKPKATKGADASAKPAAITLDTAEVGQ 797

Query: 764 VVHGYVCNIIETGCFVRFLGRLTG-FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           VV G V   ++ G  V+   ++ G   P   A D           V   V++ I+ ++ E
Sbjct: 798 VVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFNHVKGQPLPAVDAVVKAAIVGIDRE 857

Query: 823 TGRITLSLKQSCCS 836
             ++ LS + S  S
Sbjct: 858 NKQLILSTRPSRVS 871



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 30/236 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G +V GR+++ +    G +V++   + G +H         SD    ++  +  PL   D 
Sbjct: 796  GQVVTGRVTRHVQK--GALVKVTAKVRGILH--------PSDVADDFNHVKGQPLPAVD- 844

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLS 1377
               VK  ++ I R  +     +L L        ST  S +S   D     K + +I DL 
Sbjct: 845  -AVVKAAIVGIDRENK-----QLIL--------STRPSRVSPQPDRSVRDKEIGEISDLH 890

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
                V+G++K+V   G F+ + R LDA+V +  L D YV+  +  F + ++V GR+L V+
Sbjct: 891  VGQTVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVD 950

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
              SK++E+T +   S  A +S    +++L  G +V G + R+E YGL I I+ + L
Sbjct: 951  AESKKIEMTFR---SEEALKSSTLTIADLKEGQVVDGTVNRIEPYGLLIQIQRSKL 1003



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 26/266 (9%)

Query: 586 RLITHGWITKIE-KHGCFVRFYNGVQGFAPRSELGLD--PGCEPSSMYHVGQVVKCRIMS 642
           R + +  I ++E + G  V+   GV+GF   S    +  P    +  + +G   + R+  
Sbjct: 431 RTVENAKIVRVEPERGLIVQLEPGVEGFVHISHTSDEHVPSLSAAGAHKIGSTHRARVTG 490

Query: 643 SIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
             P    + LS  MKP+ + +  L    V+ G +V G +  +T +A+  +V   G   G 
Sbjct: 491 YFPLDGLLQLS--MKPSILEQKYLQVSDVQPGQIVKGTIKKLTDSAL--FVSLSGNMDGV 546

Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQ 751
           +   H AD         ++ +PG  F        ++LV+D     + L+AK +LI+S   
Sbjct: 547 VWPNHYADI--------ALKQPGKRFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLP 598

Query: 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811
           + +         V H  V  + +    V F   L    P   AV+     L+ ++ VG+ 
Sbjct: 599 VLARYEDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKP 658

Query: 812 VRSNILDVNSETGRITLSLKQSCCSS 837
           V+  +  +  E  RI  S++Q+  +S
Sbjct: 659 VKVRLTSLEPEQRRIVASIRQAAGAS 684



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 133/298 (44%), Gaps = 38/298 (12%)

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            KA    + S+   A    + +VG +V   +T        +K      G +H ++V DD +
Sbjct: 774  KATKGADASAKPAAITLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFN 833

Query: 1102 NVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVS---EIGSKLLF 1156
            +V         +   V A I+   + NK  +       LS +PS ++      +  K + 
Sbjct: 834  HVKGQPLP--AVDAVVKAAIVGIDRENKQLI-------LSTRPSRVSPQPDRSVRDKEIG 884

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGK 1214
            E  D+ +GQ V G++  V +    +T+ R L A++ I  L   Y    ++E++ RF + +
Sbjct: 885  EISDLHVGQTVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDY----VKEWKPRFKVNQ 940

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
             V G +L ++ E K + +  R  ++ +   T+ I++      + EG +V G +++I    
Sbjct: 941  VVEGRILQVDAESKKIEMTFRS-EEALKSSTLTIAD------LKEGQVVDGTVNRIEP-- 991

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD-PLSGYDEGQFVKCKVLEIS 1331
             GL++QI          ++LK +C     +   +   D  L G+  G  VK  +L+++
Sbjct: 992  YGLLIQI--------QRSKLKGLCRKTEFTDNKDADVDAALEGFRAGDKVKACILKLA 1041



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 116/540 (21%), Positives = 216/540 (40%), Gaps = 74/540 (13%)

Query: 967  DLGVHQTVNAIVEIVKEN-YLV-LSLPEYNHSIGY----ASVSDYNTQKFPQKQFLNGQS 1020
            DL    T+ A V+ V+++ Y+V L +P+ +  + +     + +D    K P    +N   
Sbjct: 241  DLKEGFTLTAAVQSVEDHGYIVDLGIPDVSGFLSFKDAPTTSTDDEDAKLPVGSLVN--- 297

Query: 1021 VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR 1080
              ATV+ L   S  GR   +    ++  +S +      ++   G+LVQ+ IT   P  L 
Sbjct: 298  --ATVLKL---SKNGRTCNVTADPAKFTSSFATEVTNVAAVLPGTLVQSLITAASPTGLN 352

Query: 1081 LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-SNKPDMKKSFLWELS 1139
            L+    F G I    +    SN       ++ +G+ + AR++   S+ P      L E  
Sbjct: 353  LQVIGFFDGTIDEVHLRQGSSN-------DWNVGKKIKARVLYNYSDSPPKLALALNEHI 405

Query: 1140 IKPSMLTVSEIGSKLLFEECDVSIGQRV-TGYVYKVDNEWALLT-ISRHLKAQLFILDSA 1197
            I      +    + +        IG+ V    + +V+ E  L+  +   ++  + I  ++
Sbjct: 406  IALDSRKIKNPDNTMTDFRERYPIGRTVENAKIVRVEPERGLIVQLEPGVEGFVHISHTS 465

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
             E            IG      V        LL+L ++P    +  K + +S+      +
Sbjct: 466  DEHVPSLSAAGAHKIGSTHRARVTGYFPLDGLLQLSMKP--SILEQKYLQVSD------V 517

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
              G IV G I K+      L V +  ++ G V      +I +  P      G+      +
Sbjct: 518  QPGQIVKGTIKKLTDS--ALFVSLSGNMDGVVWPNHYADIALKQP------GKR-----F 564

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
              G  +KC+VL +     G   + L+ + +L              +D+    L + ED  
Sbjct: 565  KAGASIKCRVLVVDE---GRKRISLTAKKTL--------------IDSTLPVLARYEDAQ 607

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE----FPIGKLVAGRV 1433
              M+    V  V  K   +     L A V   +     VESP++     FP+GK V  R+
Sbjct: 608  VGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKD----AVESPDQRLADSFPVGKPVKVRL 663

Query: 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             S+EP  +R+  +++    + A  S+   L+ + +GDI+ G++  V      +T++ + +
Sbjct: 664  TSLEPEQRRIVASIR----QAAGASQPVPLTAVEIGDILPGKVTEVHKEHALLTLQPSGV 719



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 115/530 (21%), Positives = 210/530 (39%), Gaps = 86/530 (16%)

Query: 455  KKYKEGSCVRVRIL----GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
            K++K G+ ++ R+L    G + +   A   L  S    L   + D + GMV    V  V 
Sbjct: 562  KRFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLPVLA-RYEDAQVGMVTHAVVFKVF 620

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTHKKT 568
                +V+F   +KA+ P     E    +    F VG  +  R+  L  + +RI  + ++ 
Sbjct: 621  DKHLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIVASIRQA 680

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
               S+   L++  E  D  I  G +T++ K H       +GV+     + + +  G   +
Sbjct: 681  AGASQPVPLTA-VEIGD--ILPGKVTEVHKEHALLTLQPSGVRALVSLANVAMLRGVSAA 737

Query: 628  SMYHVGQ--------VVKCR-------IMSSIPASRRIN--LSFMMKPTRVSEDDLVKLG 670
             +    Q        VV  R       I+S  P+  +         KP  ++ D   ++G
Sbjct: 738  QVRTALQPGEVLPDLVVVERSPEKGFVIVSGKPSKPKATKGADASAKPAAITLD-TAEVG 796

Query: 671  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-----VMKSVIKPGYEFD 725
             +V+G V        +V V AK   +G +    +AD   H        + +V+K      
Sbjct: 797  QVVTGRVTRHVQKGALVKVTAK--VRGILHPSDVADDFNHVKGQPLPAVDAVVKAA---- 850

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFV 779
             ++ +D E+  L+LS + S ++             + S +H    V G++ ++ + G FV
Sbjct: 851  -IVGIDRENKQLILSTRPSRVSPQPDRSVRDKEIGEISDLHVGQTVRGFIKSVADHGLFV 909

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                 L       +  D    +    + V Q V   IL V++E+ +I ++          
Sbjct: 910  TVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVDAESKKIEMT---------- 959

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                   F  EE    L+SS    ++LK       G V++G V+    +G+++   + S 
Sbjct: 960  -------FRSEE---ALKSSTLTIADLKE------GQVVDGTVNRIEPYGLLIQI-QRSK 1002

Query: 900  VYGFITHHQLA-------GATVE---SGSVIQAAILDVAKAERLVDLSLK 939
            + G     +          A +E   +G  ++A IL +  A+R + LSLK
Sbjct: 1003 LKGLCRKTEFTDNKDADVDAALEGFRAGDKVKACILKL--ADRRIALSLK 1050



 Score = 47.0 bits (110), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 114/526 (21%), Positives = 204/526 (38%), Gaps = 73/526 (13%)

Query: 212 IWLSLRLSLL-YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-- 268
           + LS++ S+L  K L +  VQ G ++   +K + D    +     +  G +  N+ A+  
Sbjct: 498 LQLSMKPSILEQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLS-GNMDGVVWPNHYADIA 556

Query: 269 --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP----- 321
               G   K G  ++  V  +D  RK + L++             K   ID  +P     
Sbjct: 557 LKQPGKRFKAGASIKCRVLVVDEGRKRISLTA-------------KKTLIDSTLPVLARY 603

Query: 322 -----GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
                GM+    V  + +  +M+ F       V       + P     + +   K V  R
Sbjct: 604 EDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVES-PDQRLADSFPVGKPVKVR 662

Query: 377 ILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPS---T 432
           +  ++P  R +  ++      ++  P + V++GDI    KV  V +   LL   PS    
Sbjct: 663 LTSLEPEQRRIVASIRQAAGASQPVPLTAVEIGDIL-PGKVTEVHKEHALLTLQPSGVRA 721

Query: 433 PVSTPAYVTISDVAEEEVRK-------------LEKKYKEGSCVRVRILGFRHLEGLATG 479
            VS      +  V+  +VR              +E+  ++G      I+  +  +  AT 
Sbjct: 722 LVSLANVAMLRGVSAAQVRTALQPGEVLPDLVVVERSPEKGFV----IVSGKPSKPKATK 777

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVK 538
              ASA    + T    + G VV G+V      GA+V+    V+  L P     +F  VK
Sbjct: 778 GADASAKPAAI-TLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFNHVK 836

Query: 539 ----PGKKFKVGAELV-------FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
               P     V A +V         +L  +  R++    +++   ++  +S         
Sbjct: 837 GQPLPAVDAVVKAAIVGIDRENKQLILSTRPSRVSPQPDRSVRDKEIGEISDLHVGQ--- 893

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
              G+I  +  HG FV    G+       EL  D   E    + V QVV+ RI+     S
Sbjct: 894 TVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVDAES 953

Query: 648 RRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
           ++I ++F     +K + ++  DL K G +V G V+ + P  +++ +
Sbjct: 954 KKIEMTFRSEEALKSSTLTIADL-KEGQVVDGTVNRIEPYGLLIQI 998


>gi|255953027|ref|XP_002567266.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588977|emb|CAP95098.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1806

 Score =  226 bits (575), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 342/1444 (23%), Positives = 605/1444 (41%), Gaps = 211/1444 (14%)

Query: 1    MAASSRKS---QKKSSKDGPKFNKASKNQFKNSKKQINDAV-----EAQDLALPPDDDVP 52
            MA + RK    ++ +++   K  K    + K   K+ NDA      +A +L++  DD+ P
Sbjct: 1    MAPTKRKGNAPEENTARQPQKRAKVGAEESKKDHKKSNDATTSTAGKASELSVLRDDE-P 59

Query: 53   VFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTE------------- 97
             FPRGG   LT  ER +I   A  D  FE  E G +KK  +K    E             
Sbjct: 60   SFPRGGASVLTPLERKQIQIQANRDVLFEQKESG-NKKPAQKAPSNEFAEESDDDVEMED 118

Query: 98   ------------------RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWG 139
                              + A +  DD   +  +G+S            K I  G  + G
Sbjct: 119  EETTTTSKKPRKKKSKSKKTAGKETDDKQDVRIEGLS-----------FKRIVPGAMILG 167

Query: 140  VVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL------------LP 184
             V+ +N  D+ + LP  L G   L   +  L+  L+  +    ++             L 
Sbjct: 168  QVSSINAHDIGLSLPNNLTGYVPLTSVSKGLEDRLEKLLNDEGEDDDAEDSSDDESFDLK 227

Query: 185  TIFHVGQLVSCIVLQLD---DDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
              F++GQ +   V+      DD K   K++I LS+       G S   +     + A V 
Sbjct: 228  DHFYLGQYLRAFVVSTGSNPDDPKAKSKKRIELSVDPRQTNTGFSKSDLVVNSAVQASVV 287

Query: 242  SIEDHGYILHFGL--PSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYL 296
            S+EDHG ++  G+      GF+  ++   +  +D   +K G +   +V   + +  V+ L
Sbjct: 288  SVEDHGVVMDLGIEGSELKGFM--SSKETDPSVDYSSIKEGSVFLCMVTGQNPSGNVIKL 345

Query: 297  SSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            SS+  T +     +      +I+  +PG      +  +  NG++   +     TVD+   
Sbjct: 346  SSNFQTSASIKKSNYLSSAPTINTFLPGTAAEVLLTEVTSNGMIGKIMGMLDATVDLVQ- 404

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH---V 405
             +     + +  Y    K+  RI+   P +    VG ++  ++L      R P S     
Sbjct: 405  SSINGKVDLEKKYKIGAKIKGRIISTFPAAEPLKVGFSMLDHVLKLSSEARGPGSSDDAP 464

Query: 406  KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSC 462
             +  I  + KVV+VD+GLG+   I  T      +V +S +++ +V  +++    ++  + 
Sbjct: 465  AISAIIPEVKVVKVDQGLGVYARIGET--KHMGFVHMSRLSDGKVETIDESSGAFQLDAV 522

Query: 463  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQ 517
               R++G+  ++ L     + S  E       DV  G +VKGKV    I  +   G IV 
Sbjct: 523  HEARVIGYNSIDNLYILSFEKSVIEQPFLRVEDVNVGAIVKGKVEKLLIGAEGMNGLIVN 582

Query: 518  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 575
               G+  L P  H ++  +  P KKF+ G +L  R+L V  + ++I +T KK+L+ S+ +
Sbjct: 583  LADGITGLVPSMHFADTMLQFPEKKFREGQKLSLRILSVNLEKRQIRLTLKKSLLNSESS 642

Query: 576  ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
            I   Y + T    + G I  ++ HG  V+FY  V+GF P SE+      +P+  + +GQV
Sbjct: 643  IWKDYKDITPSAQSPGTIVSLQSHGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRLGQV 702

Query: 636  VKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVI 690
            V    +S   +  R+ +S    P+  +E      + +  G LVSG V   + + V++ + 
Sbjct: 703  VNVHALSVDVSLGRLAVS-CKDPSTFTEKYREAFENLHPGHLVSGTVFEKSNDDVLLKLD 761

Query: 691  AKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLIN 747
              G     +  E L D      + M S ++ G + + LLVLD + ++ L+  S++ SL  
Sbjct: 762  ESGLV-ARLDAEQLIDGSASKQSSMLSKLRVGQKLNDLLVLDIQRAHRLIKVSSRASLKK 820

Query: 748  SAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            +A+Q  +P     +   S+V G+V NI   G FV FLG LTG  P+    D   A+L + 
Sbjct: 821  AAKQKNIPGQFEEVQEGSLVTGFVRNITPDGVFVEFLGGLTGLLPKRLIED---ANLKQP 877

Query: 806  YY---VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
            +Y     Q++  N+  V+ E  R  LS+K     ++ A+  +     +E IA        
Sbjct: 878  HYGLTKAQTIVVNVQSVDQEFKRFILSMK--PVQASQAAPKKAAKQTDETIA-----NPV 930

Query: 863  GSELKWVEGFIIGSVIEGK----------VHESNDFGVVVSFEEHSDVYGFITHHQLAGA 912
               +K +  F  G V+E K          V  +++    +   E  D +  I   +    
Sbjct: 931  DDNIKSMSDFTFGRVVECKVVSIKATQVNVQLADNIQGRIDVSEVFDDWKDIKDRKQPLR 990

Query: 913  TVESGSVIQAAILDVAKAER--------------LVDLSLKTVFIDRFREANSNRQAQKK 958
              ++  ++ A IL V  A                + +LSLK  +I     A  N +    
Sbjct: 991  FFKAKQILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYIKAANPAPLNME---- 1046

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFL 1016
                     + V  +    V  V ++ L ++L P     + +   S D +     +K F 
Sbjct: 1047 --------QVQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTDMEKNFP 1098

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY---DVGSLVQAEITE 1073
             G ++   V A+   +  G L L           S+K+   K ++    VG ++   +T+
Sbjct: 1099 IGSALKVQVTAV--DAEKGHLNL-----------SAKQGYDKLAFGDISVGMILPGRVTK 1145

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            +   +L ++ G    G +++T++ DD S     + +     + + A +IA       K S
Sbjct: 1146 VTERQLIMQLGESLVGAVNLTDLADDYSKANPTVHNK---NEVLRACVIAVD-----KSS 1197

Query: 1134 FLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
                LS++PS +  S   +  + +    +V     + G+V +V +    + IS  + A +
Sbjct: 1198 KKIALSLRPSKVMSSSLPVHDREISSLKEVKPNDIIRGFVRRVTDSGLFVAISHDITAYV 1257

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-----VLRP-FQDGISDKT 1245
             + D     S L+E++  F   + V G V  ++ E+  L+L     VL P F+  I+ K 
Sbjct: 1258 RVSD--LSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPITLKD 1315

Query: 1246 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1305
                       + EG IV G++ K+      +V+    ++ G  H +E+ +  V D    
Sbjct: 1316 -----------LKEGQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMADKRVEDARKL 1364

Query: 1306 YDEG 1309
            YDEG
Sbjct: 1365 YDEG 1368



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 232/1054 (22%), Positives = 461/1054 (43%), Gaps = 142/1054 (13%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            PG   +  +  V S G I +  G + A   L   S    V   KK+K+GA++  R++   
Sbjct: 372  PGTAAEVLLTEVTSNGMIGKIMGMLDATVDLVQSSINGKVDLEKKYKIGAKIKGRIISTF 431

Query: 558  SKRITVTHKKTLVKSKLAILSSY--------AEATDRLITHGWITKIEKH-GCFVRFYNG 608
                 +    +++   L + S          A A   +I    + K+++  G + R    
Sbjct: 432  PAAEPLKVGFSMLDHVLKLSSEARGPGSSDDAPAISAIIPEVKVVKVDQGLGVYARIGET 491

Query: 609  VQ-GFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----MMKPTR 660
               GF   S L    ++   E S  + +  V + R++          LSF    + +P  
Sbjct: 492  KHMGFVHMSRLSDGKVETIDESSGAFQLDAVHEARVIGYNSIDNLYILSFEKSVIEQPFL 551

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
              ED  V +G++V G V+ +   A     ++  +A G + G +P+ H AD +      K 
Sbjct: 552  RVED--VNVGAIVKGKVEKLLIGAEGMNGLIVNLADGIT-GLVPSMHFADTMLQFPEKK- 607

Query: 717  VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
              + G +   ++L ++ E   + L+ K SL+NS   +  D   I P++   G + ++   
Sbjct: 608  -FREGQKLSLRILSVNLEKRQIRLTLKKSLLNSESSIWKDYKDITPSAQSPGTIVSLQSH 666

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            G  V+F G + GF P S+  +    D ++ + +GQ V  + L V+   GR+ +S K    
Sbjct: 667  GAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRLGQVVNVHALSVDVSLGRLAVSCK---- 722

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
               D S   E +                   +  E    G ++ G V E ++  V++  +
Sbjct: 723  ---DPSTFTEKYR------------------EAFENLHPGHLVSGTVFEKSNDDVLLKLD 761

Query: 896  EHSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDR 945
            E   V        + G+  +  S++             +LD+ +A RL+ +S +      
Sbjct: 762  ESGLVARLDAEQLIDGSASKQSSMLSKLRVGQKLNDLLVLDIQRAHRLIKVSSRA----- 816

Query: 946  FREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSD 1004
                 S ++A K+K      +++     V   V  I  +   V  L      +    + D
Sbjct: 817  -----SLKKAAKQKNIPGQFEEVQEGSLVTGFVRNITPDGVFVEFLGGLTGLLPKRLIED 871

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK------ 1058
             N ++ P       Q+++  V ++       R +L +K +  ++ +  K AK+       
Sbjct: 872  ANLKQ-PHYGLTKAQTIVVNVQSV--DQEFKRFILSMKPVQASQAAPKKAAKQTDETIAN 928

Query: 1059 ---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NL 1107
                     S +  G +V+ ++  IK  ++ ++      GRI ++EV DD  ++ +    
Sbjct: 929  PVDDNIKSMSDFTFGRVVECKVVSIKATQVNVQLADNIQGRIDVSEVFDDWKDIKDRKQP 988

Query: 1108 FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEE 1158
               FK  Q ++ARI+   +  + K         K  ++ELS+KPS +  +   + L  E+
Sbjct: 989  LRFFKAKQILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYIKAAN-PAPLNMEQ 1047

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
              V +G    G+V  V ++   + +S +++ +L  +D++ + S L + ++ F IG A+  
Sbjct: 1048 --VQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTDMEKNFPIGSALKV 1105

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             V +++ EK  L L  +   D ++   + +           G I+ GR++K+      L+
Sbjct: 1106 QVTAVDAEKGHLNLSAKQGYDKLAFGDISV-----------GMILPGRVTKVTER--QLI 1152

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            +Q+G  L G V+ T+L +          D  + +P + +++ + ++  V+ + ++ +   
Sbjct: 1153 MQLGESLVGAVNLTDLAD----------DYSKANP-TVHNKNEVLRACVIAVDKSSK--- 1198

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             + LSLR S           +S+ +    + +  ++++ PN I++G+V+ VT  G F+ +
Sbjct: 1199 KIALSLRPS---------KVMSSSLPVHDREISSLKEVKPNDIIRGFVRRVTDSGLFVAI 1249

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
            S  + A V +S+LSD Y++  +  F   +LV G+V  V+    +++++LK S      ++
Sbjct: 1250 SHDITAYVRVSDLSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKA 1309

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
             I  L +L  G IV G++++VE +G FI I+ ++
Sbjct: 1310 PI-TLKDLKEGQIVTGKVRKVEEFGAFIVIDGSS 1342



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 102/499 (20%), Positives = 200/499 (40%), Gaps = 93/499 (18%)

Query: 492  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVG 546
            + SD   G VV+ KV+++ +    VQ    ++    +  +  +++ +K    P + FK  
Sbjct: 936  SMSDFTFGRVVECKVVSIKATQVNVQLADNIQGRIDVSEVFDDWKDIKDRKQPLRFFKAK 995

Query: 547  AELVFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEKHGC 601
              L  R+LGV   R    + ++H+       +L++  SY +A +    +  + +++    
Sbjct: 996  QILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYIKAANPAPLN--MEQVQVGSS 1053

Query: 602  FVRFYNGVQ------GFAP--RSELGLDPGCEPSSM-------YHVGQVVKCRIMSSIPA 646
            +V F N V         +P  R  L      +  S+       + +G  +K ++ +    
Sbjct: 1054 WVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTDMEKNFPIGSALKVQVTAVDAE 1113

Query: 647  SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV------------IAKGY 694
               +NLS      +++  D + +G ++ G V  VT   +++ +            +A  Y
Sbjct: 1114 KGHLNLSAKQGYDKLAFGD-ISVGMILPGRVTKVTERQLIMQLGESLVGAVNLTDLADDY 1172

Query: 695  SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP- 753
            SK   PT H  + +  A V              + +D  S  + LS + S + S+  LP 
Sbjct: 1173 SKAN-PTVHNKNEVLRACV--------------IAVDKSSKKIALSLRPSKVMSSS-LPV 1216

Query: 754  -----SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
                 S    + PN ++ G+V  + ++G FV     +T +   S   D    +   ++  
Sbjct: 1217 HDREISSLKEVKPNDIIRGFVRRVTDSGLFVAISHDITAYVRVSDLSDSYLKEWKDSFQP 1276

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
             Q V+  +  V++E G++ LSLK+S     D +F     L + K                
Sbjct: 1277 DQLVKGKVTFVDAEQGKLQLSLKESVL---DPNFKAPITLKDLKE--------------- 1318

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQ 921
                  G ++ GKV +  +FG  +  +  S++ G     ++A   VE        G  ++
Sbjct: 1319 ------GQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMADKRVEDARKLYDEGDAVK 1372

Query: 922  AAILDVAKAERLVDLSLKT 940
            A I+ +    + +  SLK 
Sbjct: 1373 AKIIKIDLDSKKISFSLKA 1391



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 184/419 (43%), Gaps = 53/419 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LSL+ S +       L++E VQ 
Sbjct: 991  FFKAKQILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYIKAANPAPLNMEQVQV 1050

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +      +   G  L+  V +
Sbjct: 1051 GSSWVGFVNNVADDCLWVNLS-PNVRGRLRFMDASDDLSLLTDMEKNFPIGSALKVQVTA 1109

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+      K    D   IS+ +++PG     RV  + E  +++       
Sbjct: 1110 VDAEKGHLNLSAK-QGYDKLAFGD---ISVGMILPG-----RVTKVTERQLIMQLGESLV 1160

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-- 404
            G V++  L + +   N    +N+++ + A ++ VD +S+ + L+L P  + + + P H  
Sbjct: 1161 GAVNLTDLADDYSKAN-PTVHNKNEVLRACVIAVDKSSKKIALSLRPSKVMSSSLPVHDR 1219

Query: 405  -------VKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
                   VK  DI  +  V RV D GL + +    T     AYV +SD+++  +++ +  
Sbjct: 1220 EISSLKEVKPNDII-RGFVRRVTDSGLFVAISHDIT-----AYVRVSDLSDSYLKEWKDS 1273

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFG 513
            ++    V+ ++      +G     LK S  +       T  D+K G +V GKV  V+ FG
Sbjct: 1274 FQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPITLKDLKEGQIVTGKVRKVEEFG 1333

Query: 514  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
            A +   G   +  LC    M++  +    K +  G  +  +++ +   SK+I+ + K +
Sbjct: 1334 AFIVIDGSSNISGLCHRSEMADKRVEDARKLYDEGDAVKAKIIKIDLDSKKISFSLKAS 1392



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 140/315 (44%), Gaps = 39/315 (12%)

Query: 541  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            K F +G+ L  +V  V +++  +         KLA    + + +  +I  G +TK+ +  
Sbjct: 1095 KNFPIGSALKVQVTAVDAEKGHLNLSAKQGYDKLA----FGDISVGMILPGRVTKVTERQ 1150

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
              ++    + G    ++L  D      ++++  +V++  +++   +S++I LS  ++P++
Sbjct: 1151 LIMQLGESLVGAVNLTDLADDYSKANPTVHNKNEVLRACVIAVDKSSKKIALS--LRPSK 1208

Query: 661  VSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
            V    L            VK   ++ G V  VT + + V +           +  +  ++
Sbjct: 1209 VMSSSLPVHDREISSLKEVKPNDIIRGFVRRVTDSGLFVAI-----------SHDITAYV 1257

Query: 709  EHATVMKSVIKP---GYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
              + +  S +K     ++ DQL+      +D E   L LS K S+++   + P     + 
Sbjct: 1258 RVSDLSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPITLKDLK 1317

Query: 761  PNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
               +V G V  + E G F+   G   ++G   RS+  D +  D  K Y  G +V++ I+ 
Sbjct: 1318 EGQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMADKRVEDARKLYDEGDAVKAKIIK 1377

Query: 819  VNSETGRITLSLKQS 833
            ++ ++ +I+ SLK S
Sbjct: 1378 IDLDSKKISFSLKAS 1392


>gi|296804114|ref|XP_002842909.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
 gi|238845511|gb|EEQ35173.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
          Length = 1819

 Score =  223 bits (568), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 337/1429 (23%), Positives = 593/1429 (41%), Gaps = 167/1429 (11%)

Query: 9    QKKSSKDGPKFNKASKNQF-----------KNSKKQINDAVEAQDLALPPDDDVPVFPRG 57
            +KK+  D  + N ASK++            K SK   + A +A  +++  D+  P FPRG
Sbjct: 20   KKKTKVDAKELNGASKSKKPKEHKEPKEASKASKSDTSTAPKAAPISILRDEQ-PAFPRG 78

Query: 58   GGHSLTQRERDEIHAEVD------------AEF-----EAVERGLHKKNKKKKKKTERKA 100
            G   LT  ER +I  +              AEF     E   + L  K     K  +RKA
Sbjct: 79   GNSVLTPLERKQIQIQATKDVLFEQNGKNGAEFANSDDEGSMKELEDKKDTYTKPKKRKA 138

Query: 101  NET-VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
              T   D  +    G+          +T K I+ G K+ G V+ +   D+ + LP  L G
Sbjct: 139  KSTKAKDEPAAAKQGVK------VESLTYKRIAVGSKILGQVSSIGIHDISLALPNNLTG 192

Query: 160  LARAADALDPILDNEIEA--NEDNL-----------LPTIFHVGQLVSCIVLQL---DDD 203
                  A+   L  ++EA    DN            L     VGQ +   V      D+D
Sbjct: 193  FVPLT-AISKTLTQKVEALLGNDNSEDEDDEDDDFELKDFVKVGQYLRASVTSTTRDDED 251

Query: 204  KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFL 261
            KK   K++I LS+       GL+   +     + A V S+EDHG I+  GL      GF+
Sbjct: 252  KKVKNKKRIELSIEPHAANSGLTKADMVVNATVQASVASVEDHGLIMDLGLDDSETKGFV 311

Query: 262  PRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISI 316
                L   +G+D   VK G +   +V   + +  VV LS+D  + +            +I
Sbjct: 312  SSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVVKLSADLASAASVKKAHFLNTAPTI 369

Query: 317  DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
            +  +PG      +  +   G++   +      VDI H   +    +    Y+   K+  R
Sbjct: 370  NAFLPGTAAEVLITEVTPRGLVGKIMGMLNAVVDIVHSGASDGKKDLTTKYHVGAKIKGR 429

Query: 377  ILFVDPTSRAV--GLTLNPYLLH------------NRAPPSHVKVGDIYDQSKVVRVDRG 422
            ++   P+S  +  G ++   +L             N AP     + DI  + KV  VD  
Sbjct: 430  LITTYPSSDPIKLGFSILDSVLKFSPTATLTSGDDNDAP----SISDIIPEVKVTYVDSS 485

Query: 423  LGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATG 479
            LGL + + ST      +V +S +A+E V  +   E  YK GS    RI+GF  ++ L   
Sbjct: 486  LGLYVQLGSTKYQ--GFVHLSRLADERVDSIYSSEGPYKVGSTHEGRIIGFSAMDNLFLV 543

Query: 480  ILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEF 534
             L+    E       DV  G  VKGK+    I  +   G IV     +  L P  HM++ 
Sbjct: 544  SLEPKIIEQPFLRLEDVTVGSTVKGKIEKLHIGPEGIDGLIVSLTDKISGLVPGMHMADT 603

Query: 535  EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
            ++  P KKF+ G ++  RVL V  +  ++ +T KK+L+ S+ A    Y   +    + G 
Sbjct: 604  KLQHPEKKFREGLKVSVRVLSVDLQKHQLRLTMKKSLLNSESAPWKDYENISAGNRSPGT 663

Query: 593  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
            + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV    +S  P + ++ +
Sbjct: 664  LIKIQNNGAVVQFYGPVRGFLPVSEMSEAYISDPSQHFTVGQVVNVHALSVDPENGKLVV 723

Query: 653  SFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD- 706
            S    P  V+ D     + ++ G +VSG V   + + +++ +   G     + ++H++D 
Sbjct: 724  S-CKDPATVTADYQTAFEKIRPGLVVSGTVFEKSSDDLLIKLQDSGLV-ARLNSDHISDG 781

Query: 707  -HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHP 761
               + A+ +   I+ G + D LLV   + ++ L+  + + +L  +A +  LP+    I  
Sbjct: 782  SASKRASALNR-IRVGQKMDGLLVYKVKKTHRLIQVTNRVTLKEAAAEGRLPAKFEDIKH 840

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
               V G + NII  G FV FL  LTG  P+    D   +     Y   Q + S +  V  
Sbjct: 841  GLKVTGLIRNIIPEGIFVEFLDNLTGLIPKRLVDDDHISRPDFGYSRSQVLSSTVCAVQE 900

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            ++ R  LSLK    S   +   +     E+K      +     ELK +E   +G V + K
Sbjct: 901  DSERFLLSLKPVGKSKETS---EAGSAPEKKTTARPLTNPVDEELKSMEDITLGKVTKAK 957

Query: 882  VHESNDFGVVVSFEEHS----------DVYGFITHHQLAGATVESGSVIQAAILDV--AK 929
            +    D  + V   E+           D +  I   +       S  ++   +L +  A+
Sbjct: 958  ITSVKDTQLNVIIAENVQGRIDVSEIFDSWEDIKDRKHPLQIFHSKQILPVRVLGIHDAR 1017

Query: 930  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 989
              + + +S ++  +  +  +      +    +    + L V       V  + E+ L L+
Sbjct: 1018 NHKFLPISHRSGKVSVYELSAKPSCLEAPTFEPLHLERLKVGDIHIGYVNNIAEDCLWLN 1077

Query: 990  L-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET 1047
            + P     +    +S D + +   QK F  G ++   V  + +     RL L  K     
Sbjct: 1078 ISPNVRGRLRITDISDDMSVRGNIQKHFPVGSAIKVAVAGVDTEKN--RLDLSAKIGDTA 1135

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
            +T +     K      G ++   +T++   ++ ++      G + + ++ DD + V    
Sbjct: 1136 KTLTVANLSK------GMILLGRVTKVTDHQVLVQINDNVVGVVSLIDMADDYTKVNP-- 1187

Query: 1108 FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS----- 1162
             +NF   + +   ++   + P+ K  F    S++PS +    + S L  E+ +++     
Sbjct: 1188 -TNFHKNEALRVCVV-DVDIPNKKIYF----SVRPSKI----LSSSLPVEDPEITSINQL 1237

Query: 1163 -IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
             +GQ V G++ +VDN    +T+  ++ A  +I  S    S L+E++  F + + V G + 
Sbjct: 1238 RVGQIVRGFIRRVDNIGVFVTLGHNVSA--YIRVSDLSDSYLKEWKDEFQVDQLVQGRIT 1295

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
             ++KE   +++ L+      + K      D     +  G IV G++ K+      + +  
Sbjct: 1296 LVDKESNKIQMTLKKSALDPNYKPPFTLKD-----LKVGQIVTGKVRKVEEYGAFIAIDG 1350

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
              +L G  H +E+    V D        Q      Y++   VK K+L++
Sbjct: 1351 SANLSGLCHRSEMAEKRVEDAT------QL-----YEKDDIVKAKILKV 1388



 Score =  153 bits (386), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 220/936 (23%), Positives = 395/936 (42%), Gaps = 136/936 (14%)

Query: 610  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 498  QGFVHLSRLADERVDSIYSSEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 554

Query: 667  VKL-----GSLVSGVVDV--VTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 717
            ++L     GS V G ++   + P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 555  LRLEDVTVGSTVKGKIEKLHIGPEGIDGLIVSLTDKISGLVPGMHMADTKLQHP---EKK 611

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D  +I   +   G +  I   G
Sbjct: 612  FREGLKVSVRVLSVDLQKHQLRLTMKKSLLNSESAPWKDYENISAGNRSPGTLIKIQNNG 671

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +   +D S+ + VGQ V  + L V+ E G++ +S K     
Sbjct: 672  AVVQFYGPVRGFLPVSEMSEAYISDPSQHFTVGQVVNVHALSVDPENGKLVVSCKDPATV 731

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F   EKI                     G V+ G V E +   +++  ++
Sbjct: 732  TAD---YQTAF---EKIRP-------------------GLVVSGTVFEKSSDDLLIKLQD 766

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 946
               V    + H   G+  +  S +             +  V K  RL+ ++ +       
Sbjct: 767  SGLVARLNSDHISDGSASKRASALNRIRVGQKMDGLLVYKVKKTHRLIQVTNRVTL---- 822

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 1005
                  ++A  + R     +D+     V  ++  I+ E   V  L      I    V D 
Sbjct: 823  ------KEAAAEGRLPAKFEDIKHGLKVTGLIRNIIPEGIFVEFLDNLTGLIPKRLVDDD 876

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS---ETETSSSKRAKK----- 1057
            +  + P   +   Q + +TV A+   S   R LL LK +    ET  + S   KK     
Sbjct: 877  HISR-PDFGYSRSQVLSSTVCAVQEDSE--RFLLSLKPVGKSKETSEAGSAPEKKTTARP 933

Query: 1058 ---------KSSYDV--GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE- 1105
                     KS  D+  G + +A+IT +K  +L +       GRI ++E+ D   ++ + 
Sbjct: 934  LTNPVDEELKSMEDITLGKVTKAKITSVKDTQLNVIIAENVQGRIDVSEIFDSWEDIKDR 993

Query: 1106 -NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1155
             +    F   Q +  R++   +  + K         K  ++ELS KPS L        L 
Sbjct: 994  KHPLQIFHSKQILPVRVLGIHDARNHKFLPISHRSGKVSVYELSAKPSCLEAPTF-EPLH 1052

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E   + +G    GYV  +  +   L IS +++ +L I D + + S     Q+ F +G A
Sbjct: 1053 LER--LKVGDIHIGYVNNIAEDCLWLNISPNVRGRLRITDISDDMSVRGNIQKHFPVGSA 1110

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V  ++ EK  L L  +    G + KT+ ++N      + +G I+ GR++K+     
Sbjct: 1111 IKVAVAGVDTEKNRLDLSAKI---GDTAKTLTVAN------LSKGMILLGRVTKVTDH-- 1159

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
             ++VQI  ++ G V   ++ +          D  + +P + + + + ++  V+++    +
Sbjct: 1160 QVLVQINDNVVGVVSLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK 1208

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
              +    S+R S           LS+ +      +  I  L    IV+G+++ V + G F
Sbjct: 1209 KIY---FSVRPS---------KILSSSLPVEDPEITSINQLRVGQIVRGFIRRVDNIGVF 1256

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            + L   + A + +S+LSD Y++  + EF + +LV GR+  V+  S ++++TLK S +   
Sbjct: 1257 VTLGHNVSAYIRVSDLSDSYLKEWKDEFQVDQLVQGRITLVDKESNKIQMTLKKS-ALDP 1315

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +      L +L VG IV G++++VE YG FI I+ +
Sbjct: 1316 NYKPPFTLKDLKVGQIVTGKVRKVEEYGAFIAIDGS 1351



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 154/362 (42%), Gaps = 29/362 (8%)

Query: 139  GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 198
            G V  + E  L + +   +RG  R  D  D   D  +  N    +   F VG  +   V 
Sbjct: 1064 GYVNNIAEDCLWLNISPNVRGRLRITDISD---DMSVRGN----IQKHFPVGSAIKVAVA 1116

Query: 199  QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
             +D +K      ++ LS ++    K L++  + +GM+L   V  + DH  ++     +  
Sbjct: 1117 GVDTEK-----NRLDLSAKIGDTAKTLTVANLSKGMILLGRVTKVTDHQVLVQIN-DNVV 1170

Query: 259  GFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLK 312
            G +   ++A++    +  +      L+  V  +D   K +Y S  P  +  S    +D +
Sbjct: 1171 GVVSLIDMADDYTKVNPTNFHKNEALRVCVVDVDIPNKKIYFSVRPSKILSSSLPVEDPE 1230

Query: 313  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
              SI+ L  G +V   ++ +   GV ++     +  + +  L +++    WK+++   + 
Sbjct: 1231 ITSINQLRVGQIVRGFIRRVDNIGVFVTLGHNVSAYIRVSDLSDSY-LKEWKDEFQVDQL 1289

Query: 373  VNARILFVDPTSRAVGLTLNPYLLH-NRAPP---SHVKVGDIYDQSKVVRVDRGLGLLLD 428
            V  RI  VD  S  + +TL    L  N  PP     +KVG I    KV +V+   G  + 
Sbjct: 1290 VQGRITLVDKESNKIQMTLKKSALDPNYKPPFTLKDLKVGQIV-TGKVRKVEE-YGAFIA 1347

Query: 429  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI-LKASAFE 487
            I  +  +       S++AE+ V    + Y++   V+ +IL    LE     + LKAS F 
Sbjct: 1348 IDGS-ANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKILKV-DLEKCQIALGLKASYFN 1405

Query: 488  GL 489
             L
Sbjct: 1406 DL 1407



 Score = 40.0 bits (92), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 31/188 (16%)

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            +V G++  +   G FV     ++ +   S   D    +    + V Q V+  I  V+ E+
Sbjct: 1242 IVRGFIRRVDNIGVFVTLGHNVSAYIRVSDLSDSYLKEWKDEFQVDQLVQGRITLVDKES 1301

Query: 824  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
             +I ++LK+S     D ++     L + K+                     G ++ GKV 
Sbjct: 1302 NKIQMTLKKSAL---DPNYKPPFTLKDLKV---------------------GQIVTGKVR 1337

Query: 884  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGS-------VIQAAILDVAKAERLVDL 936
            +  ++G  ++ +  +++ G     ++A   VE  +       +++A IL V   +  + L
Sbjct: 1338 KVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKILKVDLEKCQIAL 1397

Query: 937  SLKTVFID 944
             LK  + +
Sbjct: 1398 GLKASYFN 1405


>gi|389630328|ref|XP_003712817.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
 gi|351645149|gb|EHA53010.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
          Length = 1781

 Score =  223 bits (568), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 328/1377 (23%), Positives = 582/1377 (42%), Gaps = 153/1377 (11%)

Query: 17   PKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEI--HAEV 74
            P+ + ASK++ K  K     +  A  +     +D P+FPRGGG  LT  E  +I   A  
Sbjct: 28   PRSDSASKSKDKADKPA---SAPAAPVVSKLKEDEPLFPRGGGSVLTPLEHKQIKVQASK 84

Query: 75   DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAG 134
            D  FE  E G   K K+ +   + K  ++   L  L  +  S K+      +  K +  G
Sbjct: 85   DVLFEQ-ESG-KSKGKEDRAPKKLKGKKSKTQLKELAKNADSVKI----ESLNFKRLVKG 138

Query: 135  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-----------ANEDNLL 183
              + G ++ ++  ++ I LP  + G  +A  ++   L  +++            + +  L
Sbjct: 139  SLVLGQISAISALEVEISLPNNVTGHVKAT-SISTQLTKKLQDAMDVDQEEEDDDSEIDL 197

Query: 184  PTIFHVGQLVSCIVLQLDDDKKEIG---KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
             +I  VGQ V   V+   ++    G   KR+I LSL+  L   GLS   V E   +   +
Sbjct: 198  TSILSVGQYVRAYVVSTMEEPSTAGAKGKRRIELSLQPELANTGLSSADVVENSTVAGSI 257

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPG----LLLQGVVRSIDR----TR 291
             S+EDHGY++  G+ + TGFL +  + +  S   ++PG    LL+ GV   I +    T+
Sbjct: 258  SSVEDHGYVVDLGIQNLTGFLSKKEVDKGISAAQLEPGCVHLLLVTGVKGKIAQVSTLTK 317

Query: 292  KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 351
            K+  +   P T            +I+  +PG  V   V  I   G+    +     T DI
Sbjct: 318  KLSNVQLFPGTAK----------TINTFLPGTAVDVLVSDISGRGLAGKVMGSLDVTADI 367

Query: 352  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYL--LHNR-------- 399
             H        N +  Y    KV AR++   PTS    +G++L  +L  L  R        
Sbjct: 368  IHSGLGPNGVNLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKE 427

Query: 400  APP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-- 456
             PP + +    I +Q  V +V+  +GL +D     V  P +V IS V + +V  L +   
Sbjct: 428  VPPLTALPHSSIVEQCTVTKVEPDIGLFVDTGIEGV--PGFVHISRVKDGKVDALYEASG 485

Query: 457  -YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV----KGKVIAVDS 511
             YK GS  R RI+G+  ++G+     + S  E       DV    VV    +  ++  D 
Sbjct: 486  PYKTGSVHRGRIVGYNSMDGMYHLSFEKSILERQYLRIEDVPIAEVVNVTIEKMIVKEDG 545

Query: 512  F-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKT 568
              G IV+   G+    P  H+++  +  P KKF+ G ++  RVL V   +  + +T KKT
Sbjct: 546  LSGVIVKLADGITGFVPEMHLADIRLQHPEKKFREGLKVKARVLSVDPAKNQLRLTFKKT 605

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV S+ A +  + EA+      G I KI+  G FV+FY  ++GF P  E+      +P+ 
Sbjct: 606  LVNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPNE 665

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNA 684
             +  GQVV   ++S  P  RR+ +S         E  +    +K+G LVSG V   + + 
Sbjct: 666  HFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQMALQKLKVGDLVSGSVTEKSEDN 725

Query: 685  VVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS--NLLLSA 741
            V +  +     K  +   HL D          S I+ G   + L+VL+ +    +++LS 
Sbjct: 726  VFLE-LKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVGQTLEDLVVLEKDEGRRSIVLSL 784

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K SL+ ++Q  Q  +  +      +V G+V NI  T  FV+F G LT   P+S      +
Sbjct: 785  KPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTAVFVQFGGNLTALLPKSMISTQNQ 844

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--------------CCSSTDASFMQE 845
            A       + Q++   +  V  E  R+ +S+  +                ++ DAS    
Sbjct: 845  ALEDFGLRLHQAIEVKVHSV--EDKRLVVSMPDAEAPKDTKPRHEAKPVSNAVDASITST 902

Query: 846  H-----FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                   + + +IA ++ ++ N           +   ++G+V  S  F          D 
Sbjct: 903  DDISVGTVTKARIASIKKTQLN---------VALADNVQGRVDISEVF----------DS 943

Query: 901  YGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            +  IT+ +   +      +I   ++ V  A+  R +  S +T        A  +    K 
Sbjct: 944  WDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFLPFSHRTANSVLELTAKPSSVRAKG 1003

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFL 1016
            + K  A  D+    +    V   ++ +L ++L P     I  + VSD ++  K  ++ F 
Sbjct: 1004 QYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAVRGRIRSSEVSDDSSHGKDLRQNFP 1063

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             G ++ A V+A+ + +  G+L L  ++    E    +  +K       +++ A +T++  
Sbjct: 1064 VGTALRARVLAVDADN--GKLDLSARSARPNEHMKWEELEKD------TVMHARVTKVND 1115

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             ++  +        + I ++NDD  +      +  K  +    R+   S   + KK    
Sbjct: 1116 RQVFFQISDSVAAPVQIIDLNDDYDHA-----NPLKYSKNDIVRVSVVSIDKNHKK---L 1167

Query: 1137 ELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
             LS + S +  SE  +  K +     +  G  + G+V  V ++   +T+   + A + I 
Sbjct: 1168 RLSARESRVLSSELPVKDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVTALVRIS 1227

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
            D     + L++++  F + + V G V S++K        L   Q  +    VD     + 
Sbjct: 1228 D--LSDAFLKDWKEHFQVDQLVKGRVTSVDK-------TLGHVQMSLKASAVDEDYKPLP 1278

Query: 1255 TF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             +  + EG ++ G++ K+      +++    ++ G  H TE+ +  V D    Y EG
Sbjct: 1279 GYGDLKEGQVITGKVRKVADFGAFILIDKSANVSGLCHRTEMADKPVKDATKLYREG 1335



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 213/973 (21%), Positives = 399/973 (41%), Gaps = 183/973 (18%)

Query: 593  ITKIEKH-GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            +TK+E   G FV     GV GF   S +    +D   E S  Y  G V + RI+      
Sbjct: 445  VTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRIVGYNSMD 504

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSL-VSGVVDVVTPNAVV--------VYVIAKGYSKGT 698
               +LSF      + E   +++  + ++ VV+V     +V        +  +A G + G 
Sbjct: 505  GMYHLSF---EKSILERQYLRIEDVPIAEVVNVTIEKMIVKEDGLSGVIVKLADGIT-GF 560

Query: 699  IPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
            +P  HLAD  L+H    +   + G +   ++L +D   + L L+ K +L+NS      D 
Sbjct: 561  VPEMHLADIRLQHP---EKKFREGLKVKARVLSVDPAKNQLRLTFKKTLVNSEAAPIKDF 617

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
                    V G +  I   G FV+F G L GF P  +  +    D ++ +  GQ V  ++
Sbjct: 618  GEASVGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHV 677

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            + V+ E  R+ +S K               F +E+++A+              +   +G 
Sbjct: 678  ISVDPERRRLVVSCKDPAA-----------FGVEKQMAL--------------QKLKVGD 712

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHH---------QLAGATVESGSVIQ-AAILD 926
            ++ G V E ++  V +  ++ S       HH         Q A + +  G  ++   +L+
Sbjct: 713  LVSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVGQTLEDLVVLE 772

Query: 927  VAKAERLVDLSLKTV---------FIDRFREANSNRQAQKKKR----------------- 960
              +  R + LSLK           F+    +A   +  Q   R                 
Sbjct: 773  KDEGRRSIVLSLKPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTAVFVQFGGNLTA 832

Query: 961  ---------KREASKDLGV--HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                     + +A +D G+  HQ +   V  V++  LV+S+P+          ++     
Sbjct: 833  LLPKSMISTQNQALEDFGLRLHQAIEVKVHSVEDKRLVVSMPD----------AEAPKDT 882

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQA 1069
             P+ +            A P S+          A+  + TS+           VG++ +A
Sbjct: 883  KPRHE------------AKPVSN----------AVDASITSTD-------DISVGTVTKA 913

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
             I  IK  +L +       GR+ I+EV D  D+    ++  S F   Q +  R+I   + 
Sbjct: 914  RIASIKKTQLNVALADNVQGRVDISEVFDSWDEITNAKDPLSKFTQNQIIDVRVIGVHDA 973

Query: 1128 PDMK--------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
             + +         + + EL+ KPS  +V   G        DV  G     +V   +++W 
Sbjct: 974  RNYRFLPFSHRTANSVLELTAKPS--SVRAKGQYKPLAMADVKAGSSWLTFVNNNEDKWL 1031

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
             + +S  ++ ++   + + + S  ++ ++ F +G A+   VL+++ +   L L  R  + 
Sbjct: 1032 WVNLSPAVRGRIRSSEVSDDSSHGKDLRQNFPVGTALRARVLAVDADNGKLDLSARSAR- 1090

Query: 1240 GISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
                      N++M+    E D ++  R++K+      +  QI   +   V   +L +  
Sbjct: 1091 ---------PNEHMKWEELEKDTVMHARVTKV--NDRQVFFQISDSVAAPVQIIDLND-- 1137

Query: 1299 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1358
                   YD    +PL  Y +   V+  V+ I +      H +L L       S+  S  
Sbjct: 1138 ------DYDHA--NPLK-YSKNDIVRVSVVSIDKN-----HKKLRL-------SARESRV 1176

Query: 1359 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1418
            LS+++    K +  +  +    I++G+VKNV+ KG F+ L   + A V +S+LSD +++ 
Sbjct: 1177 LSSELPVKDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVTALVRISDLSDAFLKD 1236

Query: 1419 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1478
             ++ F + +LV GRV SV+     V+++LK S +       +    +L  G ++ G++++
Sbjct: 1237 WKEHFQVDQLVKGRVTSVDKTLGHVQMSLKAS-AVDEDYKPLPGYGDLKEGQVITGKVRK 1295

Query: 1479 VESYGLFITIENT 1491
            V  +G FI I+ +
Sbjct: 1296 VADFGAFILIDKS 1308



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 197/909 (21%), Positives = 346/909 (38%), Gaps = 155/909 (17%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G  V+  +G+ GF P   L       P   +  G  VK R++S  PA  ++ L+F  K T
Sbjct: 548  GVIVKLADGITGFVPEMHLADIRLQHPEKKFREGLKVKARVLSVDPAKNQLRLTF--KKT 605

Query: 660  RV-SEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
             V SE   +K      +G  V G +  + P  +  +V   G  +G +P   +++      
Sbjct: 606  LVNSEAAPIKDFGEASVGQQVQGTIVKIKP--IGAFVQFYGTLRGFLPIGEMSESF---- 659

Query: 713  VMKSVIKPGYEFD-------QLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSV 764
                +  P   F         ++ +D E   L++S K  +     +Q+      +    +
Sbjct: 660  ----IRDPNEHFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQMA--LQKLKVGDL 713

Query: 765  VHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSNILDV 819
            V G V    E   F+           R+     K+    ++ LSK   VGQ++  +++ +
Sbjct: 714  VSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSKNQSALSK-IRVGQTLE-DLVVL 771

Query: 820  NSETGR--ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
              + GR  I LSLK S   ++                       NG  L  +    +G +
Sbjct: 772  EKDEGRRSIVLSLKPSLVKAS----------------------QNGQFLTTLADAKVGKL 809

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA-KAERLVDL 936
            ++G V       V V F    ++   +    +        S    A+ D   +  + +++
Sbjct: 810  VQGFVRNITPTAVFVQF--GGNLTALLPKSMI--------STQNQALEDFGLRLHQAIEV 859

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASK--------------DLGVHQTVNAIVEIVK 982
             + +V   R   +  + +A K  + R  +K              D+ V     A +  +K
Sbjct: 860  KVHSVEDKRLVVSMPDAEAPKDTKPRHEAKPVSNAVDASITSTDDISVGTVTKARIASIK 919

Query: 983  ENYLVLSLPE-----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA---------L 1028
            +  L ++L +      + S  + S  +    K P  +F   Q +   V+          L
Sbjct: 920  KTQLNVALADNVQGRVDISEVFDSWDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFL 979

Query: 1029 P-SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
            P S  TA  +L L    S        +    +    GS     +   +   L +      
Sbjct: 980  PFSHRTANSVLELTAKPSSVRAKGQYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAV 1039

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
             GRI  +EV+DD S+  ++L  NF +G  + AR++A     D  K  L   S +P+    
Sbjct: 1040 RGRIRSSEVSDDSSHG-KDLRQNFPVGTALRARVLAVD--ADNGKLDLSARSARPN---- 1092

Query: 1148 SEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWALLTISRHLKA--QLFILDSAYEPSEL 1203
                  + +EE   D  +  RVT    KV++      IS  + A  Q+  L+  Y+ +  
Sbjct: 1093 ----EHMKWEELEKDTVMHARVT----KVNDRQVFFQISDSVAAPVQIIDLNDDYDHANP 1144

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
             ++ +       V   V+SI+K  K LRL  R  +   S+  V        + I +G I+
Sbjct: 1145 LKYSK----NDIVRVSVVSIDKNHKKLRLSARESRVLSSELPVKDKEITSVSQIEQGTIL 1200

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G +  +     GL V +G  +   V  ++L +  + D    +   Q D        Q V
Sbjct: 1201 RGFVKNVSDK--GLFVTLGGDVTALVRISDLSDAFLKDWKEHF---QVD--------QLV 1247

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            K +V  + +T+    HV++SL++S               VD   K L    DL    ++ 
Sbjct: 1248 KGRVTSVDKTLG---HVQMSLKASA--------------VDEDYKPLPGYGDLKEGQVIT 1290

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            G V+ V   G FI++ +  +   L   + ++D  V+   K +  G  V   +LSV+   K
Sbjct: 1291 GKVRKVADFGAFILIDKSANVSGLCHRTEMADKPVKDATKLYREGDSVKAIILSVDAAKK 1350

Query: 1442 RVEVTLKTS 1450
            +V   LK S
Sbjct: 1351 KVSFGLKPS 1359



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 162/404 (40%), Gaps = 62/404 (15%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMKK---SFLWEL-SIKPSMLTV--------SEIGSK 1153
            NL   +KIG  V AR+I      D  K   S L  L S++P    V        + +   
Sbjct: 378  NLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKEVPPLTALPHS 437

Query: 1154 LLFEECDVSIGQRVTGYVYKVDNEW--ALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
             + E+C V+  +   G       E     + ISR    ++  L  A  P +     R   
Sbjct: 438  SIVEQCTVTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRI 497

Query: 1212 IGKAVTGHVLSINKEKKLL-RLVLRPFQDGISDKTV-DISNDNMQTFIHEGDIVGGRISK 1269
            +G      +  ++ EK +L R  LR     I D  + ++ N  ++  I + D + G I K
Sbjct: 498  VGYNSMDGMYHLSFEKSILERQYLR-----IEDVPIAEVVNVTIEKMIVKEDGLSGVIVK 552

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
            +  G+ G V    P ++       L +I +  P     E +F       EG  VK +VL 
Sbjct: 553  LADGITGFV----PEMH-------LADIRLQHP-----EKKFR------EGLKVKARVLS 590

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
            +         + L+ + +L              V++    ++   + S    VQG +  +
Sbjct: 591  VDPAKN---QLRLTFKKTL--------------VNSEAAPIKDFGEASVGQQVQGTIVKI 633

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
               G F+     L   + +  +S+ ++  P + F  G++V   V+SV+P  +R+ V+ K 
Sbjct: 634  KPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCK- 692

Query: 1450 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             D       +   L  L VGD+V G +       +F+ +++++L
Sbjct: 693  -DPAAFGVEKQMALQKLKVGDLVSGSVTEKSEDNVFLELKDSSL 735



 Score = 40.0 bits (92), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 154/370 (41%), Gaps = 34/370 (9%)

Query: 215  SLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS--GI 272
            S+R    YK L++  V+ G     +V + ED    ++   P+  G +  + ++++S  G 
Sbjct: 998  SVRAKGQYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLS-PAVRGRIRSSEVSDDSSHGK 1056

Query: 273  DVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
            D++     G  L+  V ++D     + LS+          +  + +  + L    ++  R
Sbjct: 1057 DLRQNFPVGTALRARVLAVDADNGKLDLSARS-------ARPNEHMKWEELEKDTVMHAR 1109

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
            V  + +  V           V I  L + +   N    Y+++  V   ++ +D   + + 
Sbjct: 1110 VTKVNDRQVFFQISDSVAAPVQIIDLNDDYDHAN-PLKYSKNDIVRVSVVSIDKNHKKLR 1168

Query: 389  LTL-NPYLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAY 439
            L+     +L +  P    ++  +   +Q  ++R       D+GL + L    T     A 
Sbjct: 1169 LSARESRVLSSELPVKDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVT-----AL 1223

Query: 440  VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDV 496
            V ISD+++  ++  ++ ++    V+ R+       G     LKASA +     +  + D+
Sbjct: 1224 VRISDLSDAFLKDWKEHFQVDQLVKGRVTSVDKTLGHVQMSLKASAVDEDYKPLPGYGDL 1283

Query: 497  KPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            K G V+ GKV  V  FGA  ++     V  LC    M++  +    K ++ G  +   +L
Sbjct: 1284 KEGQVITGKVRKVADFGAFILIDKSANVSGLCHRTEMADKPVKDATKLYREGDSVKAIIL 1343

Query: 555  GVKSKRITVT 564
             V + +  V+
Sbjct: 1344 SVDAAKKKVS 1353


>gi|326471469|gb|EGD95478.1| rRNA biogenesis protein RRP5 [Trichophyton tonsurans CBS 112818]
          Length = 1827

 Score =  223 bits (567), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 342/1449 (23%), Positives = 597/1449 (41%), Gaps = 185/1449 (12%)

Query: 3    ASSRKSQKKSSKDGPKFNKAS---------------KNQFKNSKKQINDAVEAQDLALPP 47
            +SS   +KK+  D  + N AS               K   K SKK  +   +A  +++  
Sbjct: 14   SSSSAPKKKAKVDAEELNGASKLKKKSKEPKEQKEQKEAVKASKKDTSTVSKAAPISMLR 73

Query: 48   DDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE-------------------AVE--RG 84
            D+  P FPRGG + LT  ER +I   A  D  FE                   A E  + 
Sbjct: 74   DEQ-PAFPRGGNNVLTPLERKQIQIQATKDVLFEQKGKNGAEFANSDDEGSLGAAEDKKD 132

Query: 85   LHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEV 144
               K+KK+K KT +                 + K       +T K ++ G ++ G V+ +
Sbjct: 133  AGTKSKKRKAKTSKTKEAPA-----------AAKQGVKVESLTYKRLAVGSRILGQVSSI 181

Query: 145  NEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL-------------------LPT 185
               D+ + LP  L G     +A+   L  ++EA   +                    L  
Sbjct: 182  GLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEDDDDDDDDDDDDLELKN 240

Query: 186  IFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
               VGQ +   V      +DDKK   K+ I LS+       GL+   +     + A V S
Sbjct: 241  YVKVGQYLRAAVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVIS 300

Query: 243  IEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLS 297
            +EDHG ++  GL      GF+    L   +GID   VK G +   +V   + +  V+ LS
Sbjct: 301  VEDHGLVMDLGLEENEAKGFISSRELP--AGIDISTVKEGSVFLCIVTGQNASGTVIKLS 358

Query: 298  SDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
            +D  + +            +I+  +PG      +  +   G++   +      VD+ H  
Sbjct: 359  ADLSSAASVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSG 418

Query: 356  NTFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLHNRAPPSHVKVGD---- 409
             +    +    Y+   K+  R++   P+S  V  G ++   +L      + V  GD    
Sbjct: 419  ASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGGDDDLP 478

Query: 410  ----IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSC 462
                I  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS 
Sbjct: 479  LISDIIPEVKVTYVDTSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSMEGPYKVGST 536

Query: 463  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQ 517
               RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV 
Sbjct: 537  HEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVS 596

Query: 518  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 575
                +  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S  A
Sbjct: 597  LTDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSA 656

Query: 576  ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
                Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQV
Sbjct: 657  PWKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQV 716

Query: 636  VKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVI 690
            V    ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ + 
Sbjct: 717  VNVHALTVDAENERLVVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVFEKSSDDLLIKLQ 775

Query: 691  AKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLIN 747
              G     + + H++D      T   + I+ G + D LLV   + S+ L+  + K +L  
Sbjct: 776  DSGLI-ARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKVKKSHRLIEVTNKATLKK 834

Query: 748  SAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            +A +  LP+    I     V G V NII  G FV FL  LTG  P+    D   +     
Sbjct: 835  AAAEGRLPAKFEDIKHGLKVTGVVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASRPDFG 894

Query: 806  YYVGQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
            Y   Q + + +  V  ++ R  LSLK     +    S  AS        E+K   +  + 
Sbjct: 895  YSRFQVISATVCAVQEDSDRFLLSLKPVSKPKEQSDSNPAS--------EKKAPAVVLNN 946

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLA 910
                ELK +E  ++G + + K+    D    VV        +   E  D +  I   +  
Sbjct: 947  PIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRP 1006

Query: 911  GATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
              +  S  ++   +L +  A+  + + +S ++  +  +  +      Q  + K    + L
Sbjct: 1007 LKSFHSKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEFKPLHLEQL 1066

Query: 969  GVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVM 1026
             V       V  + E+ L L++ P     +    +S D + +   QK F  G ++   V+
Sbjct: 1067 KVGDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVI 1126

Query: 1027 ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 1086
             + +     RL L  +  S  +T +     K      G ++   +T+I   ++ ++    
Sbjct: 1127 GIDAEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDN 1178

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
              G I + ++ DD + V     +NF   + +   ++   + P+ K SF    S++PS + 
Sbjct: 1179 VVGAISLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKISF----SVRPSKVL 1230

Query: 1147 VSEIG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1204
             S +      +    ++ +GQ V G++ +VDN    +T+   + A  +I  S    S L+
Sbjct: 1231 SSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLK 1288

Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GD 1261
            E++  F + + V G +  ++KE   +++ L+        K+V   N      + E   G 
Sbjct: 1289 EWKDEFQVDQLVQGRLTVVDKENNKIQMTLK--------KSVLDPNYKPPFTLKELKVGQ 1340

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1321
            IV G++ K+      + +    +L G  H +E+    V D        Q      Y++  
Sbjct: 1341 IVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL-----YEKDD 1389

Query: 1322 FVKCKVLEI 1330
             VK KVL++
Sbjct: 1390 IVKAKVLKV 1398



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 225/936 (24%), Positives = 402/936 (42%), Gaps = 136/936 (14%)

Query: 610  QGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L        SSM   Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 508  QGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 564

Query: 667  VKL-----GSLVSGVVD--VVTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 717
             +L     GS+V G ++  ++ P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 565  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHP---EKK 621

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 622  FREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 681

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 682  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 741

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F   EK+                     G V+ G V E +   +++  ++
Sbjct: 742  TAD---YQSAF---EKVHP-------------------GLVVSGTVFEKSSDDLLIKLQD 776

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 946
               +    ++H   G++ +  S               +  V K+ RL++++ K       
Sbjct: 777  SGLIARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKVKKSHRLIEVTNKATL---- 832

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 1005
                  ++A  + R     +D+     V  +V+ I+ E   V  L      I    V D 
Sbjct: 833  ------KKAAAEGRLPAKFEDIKHGLKVTGVVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 886

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDV- 1063
            +  + P   +   Q + ATV A+   S   R LL LK +S+  E S S  A +K +  V 
Sbjct: 887  HASR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKPKEQSDSNPASEKKAPAVV 943

Query: 1064 -----------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 1106
                             G + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 944  LNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 1003

Query: 1107 L--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1155
                 +F     +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 1004 KRPLKSFHSKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLH 1062

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E+  + +G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1063 LEQ--LKVGDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1120

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V+ I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1121 LQVAVIGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1169

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
             ++VQI  ++ G +   ++ +          D  + +P + + + + ++  V+++    +
Sbjct: 1170 QVLVQINDNVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK 1218

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                +  S+R S           LS+ +      +  I++L    IV+G+++ V + G F
Sbjct: 1219 ---KISFSVRPS---------KVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVF 1266

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            + L   + A + +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S     
Sbjct: 1267 VTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLDPN 1326

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
             +     L  L VG IV G++++VE YG FI I+ +
Sbjct: 1327 YKPPF-TLKELKVGQIVTGKVRKVEEYGAFIAIDGS 1361



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 140/313 (44%), Gaps = 33/313 (10%)

Query: 541  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            K F +G+ L   V+G+ +++  +     +  S   +  + A+ +  +I  G +TKI    
Sbjct: 1113 KNFPIGSALQVAVIGIDAEKNRLDLSARIGSSAKTL--TVADLSKGMILVGRVTKITDRQ 1170

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK-CRIMSSIPASRRINLSFMMKPT 659
              V+  + V G     ++  D      + +H  + ++ C +   IP  +   +SF ++P+
Sbjct: 1171 VLVQINDNVVGAISLIDMADDYTKVNPTNFHKNEALRVCVVDVDIPNKK---ISFSVRPS 1227

Query: 660  RV------------SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            +V            +  D +K+G +V G +  V  + + V+V         I    L+D 
Sbjct: 1228 KVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRV--DNIGVFVTLGHDVTAYIRVSDLSD- 1284

Query: 708  LEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 762
                + +K   K  ++ DQL+     V+D E++ + ++ K S+++   + P     +   
Sbjct: 1285 ----SFLKE-WKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLDPNYKPPFTLKELKVG 1339

Query: 763  SVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
             +V G V  + E G F+   G   L+G   RS+  + +  D ++ Y     V++ +L V+
Sbjct: 1340 QIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVD 1399

Query: 821  SETGRITLSLKQS 833
             E G+I L LK S
Sbjct: 1400 LEKGQIALGLKAS 1412


>gi|330794746|ref|XP_003285438.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
 gi|325084613|gb|EGC38037.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
          Length = 812

 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 160/575 (27%), Positives = 280/575 (48%), Gaps = 46/575 (8%)

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPILDNEI 175
           +P+ A ++  K+I  GM + G    V+E D+ I LP GL+G  +    +D+    +   +
Sbjct: 143 IPKSACRLFKKDIHKGMVVLGSFESVSEIDITISLPFGLKGYIKFNEISDSFTEWMKKTL 202

Query: 176 EANEDNLLPT--------------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
           E  E+N+  T              +F+ GQ++   +    D     G   +  S+R  ++
Sbjct: 203 EREEENVKSTNFRKMKIISDQVRKMFYKGQIIKVAIAGFTDHHTIEG---LHCSMRPEVV 259

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-------AENSGIDV 274
             G S+ET  E M +   V+SIED GYI+ FG   +TGF+  +N         +    D+
Sbjct: 260 NSGSSMETFTENMTIHGAVQSIEDKGYIVSFGSKDYTGFIEFSNTNYYYPGQTDEKQNDL 319

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
             G  ++ ++ SID+  K   L+     VS+   KD   I++D +  GM+V T+V +++ 
Sbjct: 320 FVGQPIEALIDSIDKDTKTFKLTLSHSLVSRATVKDSSVITMDSIKAGMLVETKVIAVIG 379

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
            G+ L FL +F G V++ HL N  P  N+K++ N    V ARI+FVD  ++ +GL+  P+
Sbjct: 380 GGLHLGFLDFFAGDVELLHLNN--PLDNYKDNQN----VKARIIFVDQVNKRIGLSTLPH 433

Query: 395 LL-HNRAPPSHVKVGDIYD-QSKVVRVDRGLGLLLDIPSTPVST-----PAYVTISDVAE 447
           ++ +   P    K G I+D  S  V     L ++L  PST VS+       YV I ++  
Sbjct: 434 IMGYKPYPFGTFKKGQIFDFNSLTVERIEPLEMILACPSTVVSSKPQTIKGYVHIEELES 493

Query: 448 EEV--RKLEKKYKEGSCV--RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
             V   K   ++K+G     + RI    +L+G+ T   +    E   F+++D++ GM+  
Sbjct: 494 GVVNLNKASNQFKKGEAFNKKCRIKHLDYLDGMVTFTARTRELEKKFFSYNDIECGMITT 553

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
           G +  +      ++    +  + P  H+++  I      FK+G+ +  RV+ V    KR+
Sbjct: 554 GIIKYIREESVEIELAPSIHGVVPKTHLADVAITNTSTFFKLGSTVKVRVISVDPDKKRL 613

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
            +T KK+L++S+  I++        LI+HG ITK  ++  FV FYN   G      L L 
Sbjct: 614 QLTLKKSLIQSEYPIITDKNTTPAGLISHGIITKTTRYLVFVSFYNNSFGVVESQNLSLT 673

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           P       + +G+ V  + +SS  +   ++L+ ++
Sbjct: 674 PIQSVQKQFPIGRTVLVKSLSSDNSKPGLSLTMII 708



 Score = 43.5 bits (101), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 137/370 (37%), Gaps = 88/370 (23%)

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
            Y P +  E Q    +G+ +   + SI+K+ K  +L L      +S  TV  S+      I
Sbjct: 307  YYPGQTDEKQNDLFVGQPIEALIDSIDKDTKTFKLTLS--HSLVSRATVKDSSVITMDSI 364

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ------- 1310
              G +V  ++  ++ G  GL +       G V    L N     PL  Y + Q       
Sbjct: 365  KAGMLVETKVIAVIGG--GLHLGFLDFFAGDVELLHLNN-----PLDNYKDNQNVKARII 417

Query: 1311 -FD--------------------PLSGYDEGQFVKCKVLEISR----------------- 1332
              D                    P   + +GQ      L + R                 
Sbjct: 418  FVDQVNKRIGLSTLPHIMGYKPYPFGTFKKGQIFDFNSLTVERIEPLEMILACPSTVVSS 477

Query: 1333 ---TVRGTFHVELSLRS---SLDGMSSTNSSDLSTDVDTPGKHLEKIE------------ 1374
               T++G  H+E  L S   +L+  S+      + +     KHL+ ++            
Sbjct: 478  KPQTIKGYVHIE-ELESGVVNLNKASNQFKKGEAFNKKCRIKHLDYLDGMVTFTARTREL 536

Query: 1375 --------DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
                    D+   MI  G +K +  +   I L+  +   V  ++L+D  + +    F +G
Sbjct: 537  EKKFFSYNDIECGMITTGIIKYIREESVEIELAPSIHGVVPKTHLADVAITNTSTFFKLG 596

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYG 1483
              V  RV+SV+P  KR+++TLK    ++  QSE   I + +    G I  G I +   Y 
Sbjct: 597  STVKVRVISVDPDKKRLQLTLK----KSLIQSEYPIITDKNTTPAGLISHGIITKTTRYL 652

Query: 1484 LFITIENTNL 1493
            +F++  N + 
Sbjct: 653  VFVSFYNNSF 662


>gi|440640711|gb|ELR10630.1| hypothetical protein GMDG_04899 [Geomyces destructans 20631-21]
          Length = 1792

 Score =  222 bits (565), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 228/849 (26%), Positives = 377/849 (44%), Gaps = 86/849 (10%)

Query: 54  FPRGGGHSLTQRERDEIH----------------AEVDAEFEAVERGLHKKNKKKKKKTE 97
           FPRGG   LT  E  +I+                A+ D + EA      KK K+K K T 
Sbjct: 70  FPRGGASVLTPLEHKQINIDATRDVLFEHETASRAKADGDSEAATSHGGKKRKQKSKGT- 128

Query: 98  RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
           + AN   D+   +  +G+S            K +  G  + G V+++N  D+ + LP  L
Sbjct: 129 KDANVKGDEGDDIRIEGLS-----------YKRLVPGSLVLGQVSKINIHDIALALPNNL 177

Query: 158 RG---LARAADALDPILDNEIEANE------------DNLLPTIFHVGQLVSCIVLQLDD 202
            G   L   +  L   ++  + A +            D  L  +F VGQ +   V+  ++
Sbjct: 178 TGYVPLTSISGKLTERVEMLVAAYDGASDDDSSSIADDIDLNDLFSVGQYLRAFVVSTNE 237

Query: 203 DKK---EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSF 257
           +     E+GKR+I LSL+      G++ + +    ++ A V S+EDHG I+  GL   + 
Sbjct: 238 NNASGAEVGKRRIELSLQPQKANSGITAKELAPNSMIMASVVSVEDHGIIMDIGLQKSAI 297

Query: 258 TGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGI 314
            GF+    +     ++ ++ G ++  ++  +    K+V LS+D   +  SK  T      
Sbjct: 298 GGFMSSKEIGYAIEMNTIQEGAVMLCMITGLSSNGKIVKLSADLQKIANSKKPTYLSDAP 357

Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
           ++D  +PG  V   +  I   GV    +     T D+ H   +    + +  Y    KV 
Sbjct: 358 TVDAFLPGTAVEFLLADITPRGVAGKVMGSIDVTADLIHSGLSNAGKDLEKKYKVGSKVK 417

Query: 375 ARILFVDPT--SRAVGLTLNPYLL-----------HNRAPPSHVKVGDIYDQSKVVRVDR 421
            RI+   P    R +G++L  +++               P   + +  I +++ V +V  
Sbjct: 418 GRIICTFPNVEPRKLGISLLDHVMSLSTQQAQKNAQKHDPLQILPLSSIIEEATVKKVQP 477

Query: 422 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLAT 478
           G+GL +DI    V+   +V IS VA+ +V  L +    YK  S  R R++G+  L+G+  
Sbjct: 478 GIGLFVDIGVKGVN--GFVHISRVADSKVETLSESVGPYKVDSTHRGRVVGYNSLDGIYL 535

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSFGAI-VQFPGGVKALCPLPHMSE 533
             L+    E       D+  G VVKGKV    I     G + V+   G+  L P  HM++
Sbjct: 536 VSLEQRVLEQPFLQIEDLTIGEVVKGKVDKLFINEAGIGGLFVKLADGITGLVPEMHMAD 595

Query: 534 FEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
            +   P KKFK G  +  RVL   +  ++  +T KK LV S+  +  SY +      + G
Sbjct: 596 VKFHHPEKKFKQGLSVTARVLSTDLSKRQFRLTLKKALVNSENPVFKSYEDIEPGSQSPG 655

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            I  I   G  V+FY  V+GF P SE+      +PS  +HVGQVV   +++  PA+ R+ 
Sbjct: 656 TIISILPGGAVVQFYGTVRGFLPVSEMSESYIQDPSQHFHVGQVVNVHVLNVDPAAARLT 715

Query: 652 LSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
           +S         ++ S    +++G +VS  V   + + + V +   G  +  +P  HL D 
Sbjct: 716 VSCKDPAAFGLSQQSSLKKLRIGEIVSATVTEKSNDDISVELELSGL-RAILPVGHLTDG 774

Query: 708 LEHATVMK-SVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LPSDASHIHPN 762
            E         I+ G     L V+D    N L  L+ K +L+ +A +  L  + + +  N
Sbjct: 775 SEAKNFSAFKKIRVGQTLQNLAVIDKVEKNRLITLTNKSNLVKAANERTLLREFADVKEN 834

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            +VHG+V NI  T  FV+F G +TG  P+SK  D  +          QS+ + +L V+  
Sbjct: 835 KIVHGFVKNITPTAVFVQFGGGVTGLLPKSKLQDEAQTLPDFGLRRLQSLTAKVLSVDQS 894

Query: 823 TGRITLSLK 831
             R  LS+K
Sbjct: 895 EKRFLLSVK 903



 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 188/866 (21%), Positives = 363/866 (41%), Gaps = 120/866 (13%)

Query: 669  LGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
            +G +V G VD +  N      +   +A G + G +P  H+AD   H    K   K G   
Sbjct: 555  IGEVVKGKVDKLFINEAGIGGLFVKLADGIT-GLVPEMHMADVKFHHPEKK--FKQGLSV 611

Query: 725  D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
              ++L  D       L+ K +L+NS   +      I P S   G + +I+  G  V+F G
Sbjct: 612  TARVLSTDLSKRQFRLTLKKALVNSENPVFKSYEDIEPGSQSPGTIISILPGGAVVQFYG 671

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
             + GF P S+  +    D S+ ++VGQ V  ++L+V+    R+T+S K            
Sbjct: 672  TVRGFLPVSEMSESYIQDPSQHFHVGQVVNVHVLNVDPAAARLTVSCKDPAAFGLSQQSS 731

Query: 844  QEHFLLEEKIAMLQSSKHNGS-----ELKWVEGFI-IGSVIEGKVHESNDFGVVVSFEEH 897
             +   + E ++   + K N       EL  +   + +G + +G   E+ +F         
Sbjct: 732  LKKLRIGEIVSATVTEKSNDDISVELELSGLRAILPVGHLTDGS--EAKNFS-------- 781

Query: 898  SDVYGFITHHQLAGATVESGSVIQA-AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
                        A   +  G  +Q  A++D  +  RL+ L+ K+  +         + A 
Sbjct: 782  ------------AFKKIRVGQTLQNLAVIDKVEKNRLITLTNKSNLV---------KAAN 820

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
            ++   RE + D+  ++ V+  V+ +    + +        +   S      Q  P     
Sbjct: 821  ERTLLREFA-DVKENKIVHGFVKNITPTAVFVQFGGGVTGLLPKSKLQDEAQTLPDFGLR 879

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETS---------SSKRA--------KKKS 1059
              QS+ A V+++  S    R LL +K I+ +  S          S++A            
Sbjct: 880  RLQSLTAKVLSVDQSEK--RFLLSVKDINISVPSVDGELVYHGESQKAINPVDESITAAE 937

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTV 1117
             + +G +  A I  +K  ++ ++      GRI ++EV +    + +  +    F   QT+
Sbjct: 938  DFTLGRVTMARIASVKETQINVQLANNIQGRIDVSEVFESWEEIKDRKHPLKQFSAKQTI 997

Query: 1118 TARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1168
              R++   +  + +         K+ ++ELS K +  T+      L   +  V +G    
Sbjct: 998  PVRVLGIHDAKNHRFLPITHTAGKTAVFELSAKLTK-TIESAPEALTLNK--VKVGSSWI 1054

Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
             +V  V ++   + IS +++ ++  LD + + S L   + +F +G A+   V  I+    
Sbjct: 1055 AFVNNVRDDCLWVNISPNVRGRIGALDISDDVSLLNNLESKFPVGSAIKVSVTGIDVANN 1114

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGR 1288
             L L  R  +   S  +      +M        +V  R++K+      ++VQ+   + G 
Sbjct: 1115 RLDLSGRSARGSSSALSFQDLKKDM--------VVPARVTKVTER--QIMVQLSDKVSGP 1164

Query: 1289 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI---SRTVRGTFHVELSLR 1345
            V+ T+L +          D    +P + Y +   V+  + ++   ++ +R T      L 
Sbjct: 1165 VNLTDLTD----------DFSDANP-TIYSKNDIVRVCITDVDVPNKRIRLTTRPSRVLN 1213

Query: 1346 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1405
            SSL    +  SS               +  L  N +V+G+V NV   G F+ L   + A 
Sbjct: 1214 SSLPVKDAEVSS---------------VAQLKVNDVVRGFVNNVAENGIFVSLGGNVTAY 1258

Query: 1406 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1465
              +S+LSD Y++  +  F + +LV G+V++ +P    V+++LK+S       + I +L++
Sbjct: 1259 TRVSDLSDAYIKEWKPSFQVDQLVKGKVIAADPALNHVQLSLKSSVVDNDYVAPI-SLND 1317

Query: 1466 LHVGDIVIGQIKRVESYGLFITIENT 1491
            L VG  + G+I++VE +G+FI ++ +
Sbjct: 1318 LEVGQTITGKIRKVEDFGVFIVVDGS 1343



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 110/501 (21%), Positives = 192/501 (38%), Gaps = 80/501 (15%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIVK----PGKKFKVGAEL 549
            D   G V   ++ +V      VQ    ++    +  + E +E +K    P K+F     +
Sbjct: 938  DFTLGRVTMARIASVKETQINVQLANNIQGRIDVSEVFESWEEIKDRKHPLKQFSAKQTI 997

Query: 550  VFRVLGVKSKR------ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
              RVLG+   +      IT T  KT V    A L+   E+    +T   + K++    ++
Sbjct: 998  PVRVLGIHDAKNHRFLPITHTAGKTAVFELSAKLTKTIESAPEALT---LNKVKVGSSWI 1054

Query: 604  RFYNGVQ------GFAP--RSELG-LDPGCEPS------SMYHVGQVVKCRIMSSIPASR 648
             F N V+        +P  R  +G LD   + S      S + VG  +K  +     A+ 
Sbjct: 1055 AFVNNVRDDCLWVNISPNVRGRIGALDISDDVSLLNNLESKFPVGSAIKVSVTGIDVANN 1114

Query: 649  RINLSFMMKPTR---VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
            R++LS          +S  DL K   +V   V  VT   ++V +  K    G +    L 
Sbjct: 1115 RLDLSGRSARGSSSALSFQDLKK-DMVVPARVTKVTERQIMVQLSDK--VSGPVNLTDLT 1171

Query: 706  DHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LINSAQQLP------SDA 756
            D    A      I    +  ++ + D +  N  + L+ + S ++NS+  LP      S  
Sbjct: 1172 DDFSDAN---PTIYSKNDIVRVCITDVDVPNKRIRLTTRPSRVLNSS--LPVKDAEVSSV 1226

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + +  N VV G+V N+ E G FV   G +T +   S   D    +   ++ V Q V+  +
Sbjct: 1227 AQLKVNDVVRGFVNNVAENGIFVSLGGNVTAYTRVSDLSDAYIKEWKPSFQVDQLVKGKV 1286

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            +  +     + LSLK S   +             + +A +            +    +G 
Sbjct: 1287 IAADPALNHVQLSLKSSVVDN-------------DYVAPIS-----------LNDLEVGQ 1322

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAK 929
             I GK+ +  DFGV +  +   +V G     ++    V         G  ++A +L V  
Sbjct: 1323 TITGKIRKVEDFGVFIVVDGSMNVSGLCHRSEMTENRVTDVKKLYSEGDAVKAKVLKVEL 1382

Query: 930  AERLVDLSLKTVFIDRFREAN 950
              R V   L+  +     E++
Sbjct: 1383 DNRRVSFGLRASYFKDQSESD 1403



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 18/257 (7%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            +S   L   M+V  RV  + E  +M+      +G V++  L + F   N    Y+++  V
Sbjct: 1130 LSFQDLKKDMVVPARVTKVTERQIMVQLSDKVSGPVNLTDLTDDFSDAN-PTIYSKNDIV 1188

Query: 374  NARILFVDPTSRAVGLTLNP-YLLHNRAPPSHVKVGDIYDQSKVVRVDRGL-------GL 425
               I  VD  ++ + LT  P  +L++  P    +V  +  Q KV  V RG        G+
Sbjct: 1189 RVCITDVDVPNKRIRLTTRPSRVLNSSLPVKDAEVSSVA-QLKVNDVVRGFVNNVAENGI 1247

Query: 426  LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 485
             + +     +  AY  +SD+++  +++ +  ++    V+ +++            LK+S 
Sbjct: 1248 FVSLGG---NVTAYTRVSDLSDAYIKEWKPSFQVDQLVKGKVIAADPALNHVQLSLKSSV 1304

Query: 486  FEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPG 540
             +       + +D++ G  + GK+  V+ FG  +   G   V  LC    M+E  +    
Sbjct: 1305 VDNDYVAPISLNDLEVGQTITGKIRKVEDFGVFIVVDGSMNVSGLCHRSEMTENRVTDVK 1364

Query: 541  KKFKVGAELVFRVLGVK 557
            K +  G  +  +VL V+
Sbjct: 1365 KLYSEGDAVKAKVLKVE 1381


>gi|302505220|ref|XP_003014831.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
 gi|291178137|gb|EFE33928.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
          Length = 1820

 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 330/1388 (23%), Positives = 580/1388 (41%), Gaps = 175/1388 (12%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            D+ P FPRGG + LT  ER +I   A  D  FE          +K K   E   +E    
Sbjct: 74   DEQPAFPRGGNNVLTPLERKQIQIQATKDVLFE----------QKGKNGAEFANSEDEGS 123

Query: 107  LGSLFGDGISG--------------KLPRYANK------ITLKNISAGMKLWGVVAEVNE 146
            LG++     +G              + P  A +      +T K I+ G ++ G V+ +  
Sbjct: 124  LGAVEDKKDAGTKSKKRKAKASKTKEAPAAAKQGVKVESLTYKRIAVGSRILGQVSSIGL 183

Query: 147  KDLVICLPGGLRGLARAADALDPILDNEIEA-------------NEDNLLPTIFHVGQLV 193
             D+ + LP  L G     +A+   L  ++EA             ++D  L     VGQ +
Sbjct: 184  HDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEEDEDDDLELKNYVRVGQYL 242

Query: 194  SCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
               V   ++ +DD+K   K+ I LS+       GL+   +     + A V S+EDHG ++
Sbjct: 243  RAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVISVEDHGLVM 302

Query: 251  HFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
              GL      GF+    L   +G+D   VK G +   +V   + +  V+ LS+D  +   
Sbjct: 303  DLGLEDNEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVIKLSADLPSAGS 360

Query: 306  CVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
                       +I+  +PG      +  +   G++   +      VD+ H   +    + 
Sbjct: 361  VKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGASDGKKDL 420

Query: 364  KNDYNQHKKVNARILFVDPTSRAVGL---TLNPYL-------LHNRAPPSHVKVGDIYDQ 413
               Y+   K+  R++   P+S  V L    L+  L       L N A      + DI  +
Sbjct: 421  TTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGADDDLPSISDIIPE 480

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRVRILGF 470
             KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS    RI+GF
Sbjct: 481  VKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRIIGF 538

Query: 471  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKAL 525
              ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV     +  L
Sbjct: 539  SAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGL 598

Query: 526  CPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEA 583
             P  HM++ ++  P KKF+ G ++  RVL V  + +++ +T KK+L+ S  A    Y   
Sbjct: 599  VPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESI 658

Query: 584  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV    ++ 
Sbjct: 659  SAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNIHALTV 718

Query: 644  IPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
               + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ +   G     
Sbjct: 719  DAENERLVVS-CKDPSTVTADYQSAFENVHPGLVVSGTVFEKSSDDLLIKLQDSGLI-AR 776

Query: 699  IPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LP 753
            + ++H++D      T   + I+ G + D LLV   + S+ L+  + K +L  +A +  LP
Sbjct: 777  LTSDHISDGSSTKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATLKEAAAEGRLP 836

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            +    I     V G V NII  G FV FL  LTG  P+    D   +     Y   Q + 
Sbjct: 837  AKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASRPDFGYSRFQVIS 896

Query: 814  SNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
            + +  V  ++ R  LSLK     +    S+ AS        E+K   +  +     ELK 
Sbjct: 897  ATVCAVQEDSDRFLLSLKPVSKLKQQSDSSSAS--------EKKAPAVVLNNPIDEELKA 948

Query: 869  VEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLAGATVESGS 918
            +E  ++G + + K+    D    VV        +   E  D +  I   +    +  S +
Sbjct: 949  MEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKSFHSKA 1008

Query: 919  VIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            ++   +L +  A+  + + +S ++  +  +  +      Q  + K    + L V      
Sbjct: 1009 ILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEFKPLHLEQLKVGDRYIG 1068

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTA 1034
             V  + E+ L L++ P     +    +S D + +   QK F  G ++   V  +      
Sbjct: 1069 FVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVTGIDVEKN- 1127

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             RL L  +  S  +T +     K      G ++   +T+I   ++ ++      G I + 
Sbjct: 1128 -RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDNVVGAISLI 1180

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG--S 1152
            ++ DD + V     +NF   + +   ++   + P+ K SF    S++PS +  S +    
Sbjct: 1181 DMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKISF----SVRPSKVLSSSLAVVD 1232

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
              +    ++ +GQ V G+V +VDN    +T+   + A  +I  S    S L+E++  F +
Sbjct: 1233 PEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLKEWKDEFQV 1290

Query: 1213 GKAVTGHVLSINKEKKLLRLVLR----------PFQDGISDKTVDISNDNMQTFIHEGDI 1262
             + V G +  ++K+   +++ L+          PF              N++  +  G I
Sbjct: 1291 DQLVQGRLTVVDKDNNKIQMSLKKSALDPNYKPPF--------------NLKD-LKIGQI 1335

Query: 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
            V G++ K+      + +    +L G  H +E+    V D        Q      Y++   
Sbjct: 1336 VTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL-----YEKDDI 1384

Query: 1323 VKCKVLEI 1330
            VK KVL++
Sbjct: 1385 VKAKVLKV 1392



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 223/936 (23%), Positives = 403/936 (43%), Gaps = 136/936 (14%)

Query: 610  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 502  QGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 558

Query: 667  VKL-----GSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSV 717
             +L     GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +  
Sbjct: 559  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKK 615

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 616  FREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 675

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 676  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNIHALTVDAENERLVVSCKDPSTV 735

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F                      E    G V+ G V E +   +++  ++
Sbjct: 736  TAD---YQSAF----------------------ENVHPGLVVSGTVFEKSSDDLLIKLQD 770

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 946
               +    + H   G++ +  S +             +  V K+ RL++++ K       
Sbjct: 771  SGLIARLTSDHISDGSSTKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL---- 826

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 1005
                  ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D 
Sbjct: 827  ------KEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 880

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA---- 1055
            +  + P   +   Q + ATV A+   S   R LL LK +S      ++ ++S K+A    
Sbjct: 881  HASR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKLKQQSDSSSASEKKAPAVV 937

Query: 1056 ---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 1106
                     K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 938  LNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 997

Query: 1107 L--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1155
                 +F     +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 998  KRPLKSFHSKAILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLH 1056

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E+  + +G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1057 LEQ--LKVGDRYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1114

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V  I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1115 LQVAVTGIDVEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1163

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
             ++VQI  ++ G +   ++ +          D  + +P + + + + ++  V+++    +
Sbjct: 1164 QVLVQINDNVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK 1212

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                +  S+R S           LS+ +      +  I++L    IV+G+V+ V + G F
Sbjct: 1213 ---KISFSVRPS---------KVLSSSLAVVDPEITSIDNLKVGQIVRGFVRRVDNIGVF 1260

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            + L   + A + +S+LSD +++  + EF + +LV GR+  V+  + +++++LK S +   
Sbjct: 1261 VTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMSLKKS-ALDP 1319

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +     NL +L +G IV G++++VE YG FI I+ +
Sbjct: 1320 NYKPPFNLKDLKIGQIVTGKVRKVEEYGAFIAIDGS 1355


>gi|296423848|ref|XP_002841464.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637704|emb|CAZ85655.1| unnamed protein product [Tuber melanosporum]
          Length = 1787

 Score =  221 bits (563), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 343/1488 (23%), Positives = 631/1488 (42%), Gaps = 198/1488 (13%)

Query: 3    ASSRKSQKKSSKDGPKFNKAS--KNQFKNSKKQINDAVEAQDLALPPD--------DDVP 52
             S +K ++    D  + NK+   KN    +K+   +A  A     PP         D+  
Sbjct: 2    GSEKKRKRPQDADPRRANKSETKKNPATANKRLKPEASTAASKFEPPKLSTFCSSKDEET 61

Query: 53   VFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL 110
             FPRGGG  LT  E  +I   A  D  FEA E    K  KKK  + E K ++      S 
Sbjct: 62   SFPRGGGSVLTPLEFKQISNDAAKDVLFEA-ENAKAKSTKKKPMREELKKDKKSKRDESK 120

Query: 111  FGD--GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAAD 165
             G+  GI       A  ++ K +  G  + G ++++N+ DL + LP  L G   L   ++
Sbjct: 121  KGEQKGIK------AEGLSYKRLVPGTLVLGCISQINQTDLALSLPNNLTGFVPLTSISE 174

Query: 166  ALDPILDNEI--------------------EANEDNL-LPTIFHVGQLVSCIVL---QLD 201
            +L+  ++  +                    E++ED++ L  +F +GQ +   V+   +L 
Sbjct: 175  SLNKRVEALVRDSDDDEDEDVEEKIGTAKSESSEDDVDLKAMFQIGQYLRAYVVSSSELA 234

Query: 202  DDKKEIG----KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS- 256
            + K   G    K++I LSL   +   GL+   +  G  + A V S+EDHG +++ G+ + 
Sbjct: 235  NSKSPSGSKKIKKRIELSLDPVMANNGLTTTELVVGCTVQASVTSVEDHGLVMNLGIGND 294

Query: 257  FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPD---------TVSKC 306
              GFL    L +   + D K G ++      +    K+V LS D +         +  K 
Sbjct: 295  LKGFLSSKELGKGRSVTDAKEGQVMLCTTIGLSSNGKIVKLSGDLEQKPSKKGKYSGGKA 354

Query: 307  VTKDLKGISIDLLVPGMMVSTRVQSILEN----GVMLSFLTYFTGTVDIFHLQNTFPTTN 362
                    ++D  +PG  V   +  I +     G++   +     T+D FH    +   +
Sbjct: 355  AWWLSSAPTVDTFLPGTGVEVLITDIAKGSKAVGIVGKVMGLVDATMDFFHASG-WREKD 413

Query: 363  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVV 417
             ++ +   +K+ AR++        + L++ P++L         P + +    I + +K++
Sbjct: 414  IESKFKVGEKIKARVIATYAEPHKLALSILPHVLSFTRPIENEPTTILPTSTIINSAKIL 473

Query: 418  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEE-EVRKLEKK---YKEGSCVRVRILGFRHL 473
             ++   GL LD+    V  P +V IS V+ +  +  L K    ++ GS    RI+G+  +
Sbjct: 474  NIEPKTGLSLDVGVPGV--PGFVHISRVSSDSRIEVLSKDSGLHQTGSVHMARIIGYNSM 531

Query: 474  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMS 532
            +GL    ++    +       D+K G VVKG +  V DS   IV    G+  +    H+S
Sbjct: 532  DGLYLVSMEQKVLDQPFLRVEDIKIGEVVKGTINRVLDSGRVIVSLAEGITGIVDELHLS 591

Query: 533  EFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
            + ++  P KKF+ G E+  RVL      +++ +T KK +V S   I+SSY + +    + 
Sbjct: 592  DIKLKHPEKKFREGIEVKARVLLTDPSKRKVMLTLKKAIVNSDAPIISSYEDTSSGTRSV 651

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            G + KI   G  V+F++ V GF P SE+      +P   + VGQ V   ++S  P ++++
Sbjct: 652  GTLVKILPSGAVVKFFSDVCGFLPISEMSEAYIQDPHEHFTVGQSVNVHVLSVDPTNQKL 711

Query: 651  NLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYS--KGTIPTEH 703
             +S    P    E   V L     G +VSG V   + + ++V +   G    +G +    
Sbjct: 712  RVS-CRDPNLFGEVHKVALAKLPPGDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVIGQ 770

Query: 704  LAD-HLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQ--QLPSDASH 758
            L D   E +  +   ++ G + D LLVL+   E  ++ LS K SL+ +A+  ++ S    
Sbjct: 771  LTDGSREKSLGVFKKLRAGQKLDGLLVLEKHEERRSITLSMKPSLVKAAKRGRMISKFED 830

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNIL 817
            ++    V G+V N    G FV F G + G   + + +  +   L    +V  QS+   ++
Sbjct: 831  VNEGERVKGWVRNTTLHGLFVGFAGGIVGVVYK-RDLPAEVQSLPNFGFVKNQSITGRVV 889

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL---------KW 868
             ++    R  LSL  +                EEK++ + ++  N   L         K 
Sbjct: 890  YIDPSERRFRLSLNSAKS--------------EEKVSAVANTAGNSERLTVNPVDARFKL 935

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHS----------DVYGFITHHQLAGATVESGS 918
            ++ +  G + + KV    +  + V   ++           + +  I   +   A  + G 
Sbjct: 936  IDDYTPGKLTKAKVVSIQETQLNVKLADNVQGRIDVSLVFETWDAIKDKKSPLALFKKGD 995

Query: 919  VIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            V+ A ++ +  A+  R + ++         +++N+     +   K    K+ G+   +  
Sbjct: 996  VLDAKVIGIHDARNHRFLAIT--------HQKSNTKTPIFELSAKPSHIKEEGIEGCITK 1047

Query: 977  IVEIVKENYLVLSLPEYNHSIGYASV-------------SDYNTQ-KFPQKQFLNGQSVI 1022
            + +I   +  V  L   +    +A++             SD   Q K  QK F  G ++ 
Sbjct: 1048 LEDITPNSTWVTFLNNISEECAWANIMPDIRGRIRILDLSDNVAQLKTLQKSFPVGCALK 1107

Query: 1023 ATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLK 1082
              V+ + S  +  +L L  ++ S +  +  K AK       G +V   +T++   ++ ++
Sbjct: 1108 CQVLRVDSEHS--KLDLSARSPSSSALTFDKLAK-------GMVVPGRVTKVTDRQVLVQ 1158

Query: 1083 FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
                  G I +T++ DD S    N +S  ++ +     I    + P+ + +    LS +P
Sbjct: 1159 ISESVSGPISLTDLADDFSQANTNGYSKNEVIRVCIIDI----DSPNKRVT----LSARP 1210

Query: 1143 SMLTVSEIGSK--LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP 1200
            S + +S++  K   +    +V +G    G+V +V  +   +TI  ++ A   I D     
Sbjct: 1211 SRVMISDLPVKDPEIQAIVNVKVGDIRRGFVKQVSPKGLFVTIGGNVTAWTKISD--LSD 1268

Query: 1201 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1260
              L+E++  F +G+ V G +++++     +++ LR  +  IS K      D   + + EG
Sbjct: 1269 GFLKEWEGLFTVGQLVKGKIMAVDSTLGHVQMSLR--ESDISGKEKPKPAD--YSSLKEG 1324

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
             IV G++  I      + V    ++ G  H +++ +  + D    Y  G  DP       
Sbjct: 1325 QIVKGKVKNIAEYGVFISVDGSQNISGLCHKSQIADSAIDDISKLYATG--DP------- 1375

Query: 1321 QFVKCKV----LEISRTVRGT----FHVELSLRSSLDGMSSTNSSDLS 1360
              VK K+    LE  R   G     F  E+S   S DG  S   +DLS
Sbjct: 1376 --VKAKIISIDLEKKRISFGLKSSYFKDEVSEDESEDGSESEGGADLS 1421



 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 208/936 (22%), Positives = 404/936 (43%), Gaps = 128/936 (13%)

Query: 608  GVQGFAPRSELGLDPGCE----PSSMYHVGQVVKCRIM--SSIPASRRINLS--FMMKPT 659
            GV GF   S +  D   E     S ++  G V   RI+  +S+     +++    + +P 
Sbjct: 489  GVPGFVHISRVSSDSRIEVLSKDSGLHQTGSVHMARIIGYNSMDGLYLVSMEQKVLDQPF 548

Query: 660  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
               ED  +K+G +V G ++ V  +  V+  +A+G + G +   HL+D  L+H    +   
Sbjct: 549  LRVED--IKIGEVVKGTINRVLDSGRVIVSLAEGIT-GIVDELHLSDIKLKHP---EKKF 602

Query: 719  KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            + G E   ++L+ D     ++L+ K +++NS   + S        +   G +  I+ +G 
Sbjct: 603  REGIEVKARVLLTDPSKRKVMLTLKKAIVNSDAPIISSYEDTSSGTRSVGTLVKILPSGA 662

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
             V+F   + GF P S+  +    D  + + VGQSV  ++L V+    ++ +S +      
Sbjct: 663  VVKFFSDVCGFLPISEMSEAYIQDPHEHFTVGQSVNVHVLSVDPTNQKLRVSCRDPNL-- 720

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE--SNDFGVVVSFE 895
                F + H     K+A+ +                 G V+ G V E  ++D  V ++  
Sbjct: 721  ----FGEVH-----KVALAK--------------LPPGDVVSGTVVEKSADDLIVEINGL 757

Query: 896  EHSDVYGFITHHQLAGATVE----------SGSVIQAA-ILDVAKAERLVDLSLKTVFID 944
                + G +   QL   + E          +G  +    +L+  +  R + LS+K   + 
Sbjct: 758  GAEGIRGVLVIGQLTDGSREKSLGVFKKLRAGQKLDGLLVLEKHEERRSITLSMKPSLV- 816

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 1004
                     +A K+ R     +D+   + V   V     + L +        + Y     
Sbjct: 817  ---------KAAKRGRMISKFEDVNEGERVKGWVRNTTLHGLFVGFAGGIVGVVYKRDLP 867

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL-------LLKAISETETSSSK---- 1053
               Q  P   F+  QS+   V+ +  S    RL L        + A++ T  +S +    
Sbjct: 868  AEVQSLPNFGFVKNQSITGRVVYIDPSERRFRLSLNSAKSEEKVSAVANTAGNSERLTVN 927

Query: 1054 ----RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENL 1107
                R K    Y  G L +A++  I+  +L +K      GRI ++ V +  D     ++ 
Sbjct: 928  PVDARFKLIDDYTPGKLTKAKVVSIQETQLNVKLADNVQGRIDVSLVFETWDAIKDKKSP 987

Query: 1108 FSNFKIGQTVTARII-----------AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLF 1156
             + FK G  + A++I           A +++    K+ ++ELS KPS +    I   +  
Sbjct: 988  LALFKKGDVLDAKVIGIHDARNHRFLAITHQKSNTKTPIFELSAKPSHIKEEGIEGCITK 1047

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
             E D++       ++  +  E A   I   ++ ++ ILD +   ++L+  Q+ F +G A+
Sbjct: 1048 LE-DITPNSTWVTFLNNISEECAWANIMPDIRGRIRILDLSDNVAQLKTLQKSFPVGCAL 1106

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               VL ++ E   L L  R      S  +  ++ D +     +G +V GR++K+      
Sbjct: 1107 KCQVLRVDSEHSKLDLSAR------SPSSSALTFDKLA----KGMVVPGRVTKVTDR--Q 1154

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            ++VQI   + G +  T+L     +D  S  +       +GY + + ++  +++I    + 
Sbjct: 1155 VLVQISESVSGPISLTDL-----ADDFSQAN------TNGYSKNEVIRVCIIDIDSPNK- 1202

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
               V LS R S   +S         D+      ++ I ++    I +G+VK V+ KG F+
Sbjct: 1203 --RVTLSARPSRVMIS---------DLPVKDPEIQAIVNVKVGDIRRGFVKQVSPKGLFV 1251

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
             +   + A   +S+LSDG+++  E  F +G+LV G++++V+     V+++L+ SD     
Sbjct: 1252 TIGGNVTAWTKISDLSDGFLKEWEGLFTVGQLVKGKIMAVDSTLGHVQMSLRESDISGKE 1311

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            + +  + S+L  G IV G++K +  YG+FI+++ + 
Sbjct: 1312 KPKPADYSSLKEGQIVKGKVKNIAEYGVFISVDGSQ 1347


>gi|426201105|gb|EKV51028.1| hypothetical protein AGABI2DRAFT_196672 [Agaricus bisporus var.
           bisporus H97]
          Length = 1470

 Score =  220 bits (561), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 266/1049 (25%), Positives = 455/1049 (43%), Gaps = 128/1049 (12%)

Query: 1   MAASSRK-SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGG 59
           MAA  R  ++  SS+   K     K++ K  + + + A+  ++ A         FPRGGG
Sbjct: 1   MAAQKRPLNETTSSRKSKKLKTDEKSKPKEKEVEKSTALTLEEAA---------FPRGGG 51

Query: 60  HSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKL 119
            S T  E   I AE   E +       K +KK  +KT +K N +V + G    D +  + 
Sbjct: 52  TSFTPLEVKTIRAEAVKEADEALFKEEKGSKKNARKT-KKQNISVSEKG----DSVRIEH 106

Query: 120 PRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---DN 173
             Y      K    GMK+ G V  +    L+I LP  L G   + + +     +L   DN
Sbjct: 107 LNY------KRAFVGMKILGQVVSIIPLGLIISLPNQLYGHVPITQISSQFTTVLERFDN 160

Query: 174 EIEANEDNL-------------LPTIFHVGQLVSCIVLQLD----DDKKEIGK------- 209
             E +++++             L  +FHVGQ V  IV  +      D   +GK       
Sbjct: 161 RDEGSDEDIAMEDEDEDTQTPDLYGMFHVGQYVRAIVTNVHAAGVSDIMGVGKLRDDLAK 220

Query: 210 --RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
             R++ LSL    +  G+    ++ G  ++A VKS+EDHGY L  G+   +GFL   ++ 
Sbjct: 221 ASRRMELSLVPEKVNAGVQKTDLKSGFTISAAVKSLEDHGYNLDLGVQDVSGFLSFEDVG 280

Query: 268 ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVST 327
            +S   +  G ++   V  I    +V  ++ D +  +K +  ++   S++ ++PG +V  
Sbjct: 281 RDSP-KLHVGHVINVSVSKISANNRVCNVTMDCEKQAKSLLYEIS--SVNSVLPGTLVQC 337

Query: 328 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTS 384
            + SI   G+ L  L +F GTVD FHL    P       +    KV ARIL+     P  
Sbjct: 338 LITSINPEGINLQVLGFFDGTVDQFHLPKNPPKP-----FKVGTKVKARILYNYSASPPK 392

Query: 385 RAVGLT-----LNPYLLHNRAPPSHVK----VGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
            ++ L+     L PY++      S ++    VG + D  KV RV++  GL++++      
Sbjct: 393 FSLALSEHVIRLRPYMVSMGEDSSLLEEAYPVGTVLDAVKVSRVEKERGLIVEVDG---Q 449

Query: 436 TPAYVTISDVAEEEVRKLEK--KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
              +V IS ++++ V  L     +K G+  R R+ G    +GL    LK S  E      
Sbjct: 450 LEGFVHISHLSDDHVPSLTSIGPWKPGTIHRARVTGHFTFDGLLQLSLKRSVLEQKYIQV 509

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +DV  G  V G +  +      V     +  +    H ++  +  P K+FKVG  +  RV
Sbjct: 510 TDVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRV 569

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V ++  RI++T KKTL+ S+L ILS+  +     + H  + K+      V FYN ++ 
Sbjct: 570 LVVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPEDLAHAVVFKVHDKHLLVEFYNNLKA 629

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL--VK 668
             P  E+   P    S  + VG+VVK RI+S     RRI  S      T  +  D+  V+
Sbjct: 630 VIPLKEVSETPVNSLSEAFSVGKVVKVRIISVQQNQRRIVASIRRATATGSATPDISKVE 689

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKPGYEFDQL 727
           +G++V GVV  +  +  +++ +     K     ++LA+H       +KS +K G    +L
Sbjct: 690 VGNIVEGVVAEIHKDNAILF-LQPSNVKALHSLKNLANHRAIGLPQLKSELKVGERLSEL 748

Query: 728 LVLDNESSN---LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +V+         ++ +A  S +    ++     ++H   +V G V      G  V+    
Sbjct: 749 VVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDNVHIGQIVSGRVIRHTRLGALVKVTSH 808

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    +   D     LS    V   V++ I+ V+ E  R+TLS +QS           
Sbjct: 809 IGGIIHPTDVSDNFDNGLSYP-AVDSLVKAAIVKVDEEKRRVTLSTRQS----------- 856

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY--- 901
                  ++   Q+++    E+  +   I+G+ + G V    D G+ V+   + D     
Sbjct: 857 -------RLRPDQTTQVVDKEINDISDLILGASVRGFVKSIADHGLFVTVGRYIDARVQI 909

Query: 902 -----GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
                 FI   +      +   +++  IL V    + V+L+        FR  + + + +
Sbjct: 910 RELFDDFIKDWK---PKFQVNQLVKGRILSVDIENQKVELT--------FRSGDLSARQR 958

Query: 957 KKKRKREASKDLGVHQTVNAIVEIVKENY 985
           + + KR  S DL   + V+ I++ + ENY
Sbjct: 959 EGQTKRSPS-DLHEGEKVDGIIKRI-ENY 985



 Score =  107 bits (267), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 138/539 (25%), Positives = 244/539 (45%), Gaps = 65/539 (12%)

Query: 967  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
            D+GV QTV   ++ + ++ + ++L E    + + +       K P K+F  G S+   V+
Sbjct: 511  DVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVL 570

Query: 1027 ALPS-----SSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 1079
             + +     S TA + LL   L  +S  E    +            L  A + ++    L
Sbjct: 571  VVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPE-----------DLAHAVVFKVHDKHL 619

Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139
             ++F       I + EV++   N +   FS   +G+ V  RII+             +  
Sbjct: 620  LVEFYNNLKAVIPLKEVSETPVNSLSEAFS---VGKVVKVRIISVQQN---------QRR 667

Query: 1140 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA- 1197
            I  S+   +  GS    +   V +G  V G V ++  + A+L +   ++KA   + + A 
Sbjct: 668  IVASIRRATATGSATP-DISKVEVGNIVEGVVAEIHKDNAILFLQPSNVKALHSLKNLAN 726

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            +    L + +    +G+ ++  V+ + N EK  + +   P         + +S DN    
Sbjct: 727  HRAIGLPQLKSELKVGERLSELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDN---- 782

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +H G IV GR+  I     G +V++  H+ G +H T+     VSD    +D G    LS 
Sbjct: 783  VHIGQIVSGRV--IRHTRLGALVKVTSHIGGIIHPTD-----VSD---NFDNG----LSY 828

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
                  VK  ++++    R         R +L    S    D +T V    K +  I DL
Sbjct: 829  PAVDSLVKAAIVKVDEEKR---------RVTLSTRQSRLRPDQTTQV--VDKEINDISDL 877

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
                 V+G+VK++   G F+ + R +DA+V +  L D +++  + +F + +LV GR+LSV
Sbjct: 878  ILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKDWKPKFQVNQLVKGRILSV 937

Query: 1437 EPLSKRVEVTLKTSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            +  +++VE+T ++ D  +R        + S+LH G+ V G IKR+E+YGLFI IE T +
Sbjct: 938  DIENQKVELTFRSGDLSARQREGQTKRSPSDLHEGEKVDGIIKRIENYGLFIQIEGTKM 996


>gi|443696428|gb|ELT97129.1| hypothetical protein CAPTEDRAFT_227890 [Capitella teleta]
          Length = 1324

 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 287/1205 (23%), Positives = 514/1205 (42%), Gaps = 166/1205 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKK--------------NKKKKKKTERK 99
            FPRGG   L +    +   +    F+A +   HK+              +  KKKKT  +
Sbjct: 9    FPRGGKEKLDEATLKQTRKKGKDLFQATDDDEHKRKKKAAKRKASKDKTDPAKKKKTAER 68

Query: 100  ANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
                  + G             +   +T K++  G  + G +  V + +L +  P  L G
Sbjct: 69   VEYWAPNAG-------------FVKVLTHKDLVEGSLVMGCIKNVLDYELKVQFPNNLSG 115

Query: 160  LARA---ADALDPILDNEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEI--GK 209
            +        A   +L+   + +   +     L  +FH GQ V C+V    + ++ I  G+
Sbjct: 116  IVPITGLCSAYQELLELAAKGDTSRMEELVTLQDLFHPGQFVVCLV----ERERSILEGE 171

Query: 210  RKIW---LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL 266
             KI    L+L    + + +S   ++ GM L  +V S EDHGY++  G+     FLP+ + 
Sbjct: 172  SKITPAKLTLDPRQVNREISSTGLKSGMTLHGFVSSCEDHGYLIDIGVAKVKAFLPKADA 231

Query: 267  AENSGIDVKPGLLLQGVVRSIDRTR------KVVYLSSDPDTVSKCVTKDLKGISIDLLV 320
              +    +  G  L  +V +++         ++V +  DP   SK   +    I++  L+
Sbjct: 232  NRHFKDGLHIGSYLHCLVTNVNAEAMTSGDVRMVTIDIDPKKTSKSSIRADMEINLRTLL 291

Query: 321  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
            PGM ++  VQ + +NGV++ FL  F G+V   HL N        +DY++ ++  AR+L++
Sbjct: 292  PGMSMNVSVQKVADNGVVVKFLE-FQGSVHEKHLMNKL------SDYSEKQEFRARVLYL 344

Query: 381  DPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
             P ++ V LT   + +   A       S +KVG     + V ++++         S   +
Sbjct: 345  QPVTKVVVLTQLKHFVEVDALAASQLFSQMKVGTDIADAAVTKLNKWGAYF----SFGEN 400

Query: 436  TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
               +   + + +E    +E K+  GS    R++GF +++ +     K S  +   F   +
Sbjct: 401  VQGFARKALLTDENKTPVESKFTVGSKHLCRVIGFNYVDNMVLLTAKESDVKRPYFHLEN 460

Query: 496  VKPGMVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            + PG  V   V    S   + VQ   G++      H ++       KKF +G+ +  R+L
Sbjct: 461  LNPGDKVDAVVTKHLSKDTVQVQVGVGLRGFIHRLHNADVPTSHIDKKFPIGSSIKCRIL 520

Query: 555  GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
             V  + K + +T K   +K  L +++S+ ++T   I  G I  I+  GC V F+NGV+GF
Sbjct: 521  SVDYEKKALNLTCKGRQLKPSLPLITSFEQSTRGTIAEGCIVDIQSKGCLVVFFNGVKGF 580

Query: 613  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---------------- 656
            AP   L LD     + ++ +GQ++KCR+         + +SF +                
Sbjct: 581  APAGHLNLDEDTLVTDVFFLGQMIKCRVFRPKDDINGMLVSFKLDGDDENNQKKTASNKK 640

Query: 657  ---KPTRVSEDDLVKLGSLVSG----VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
               K T   E  +V+      G     VDV +P A +           ++  EHL DH+ 
Sbjct: 641  EQKKRTGKVECKIVECRVKTVGEESLEVDVASPKATL-----------SLCHEHLTDHV- 688

Query: 710  HATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVH 766
              ++ + +++  +  DQ+ VL   +   L +SAK SLI+S ++   P     I   ++++
Sbjct: 689  --SLGRPLLRSYHAGDQIKVLMWKDDYGLHISAKPSLIHSLEKPSYPKTYQDIEDGNILN 746

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV----RSNILDVNSE 822
            G+V  + +    V+    LT    +  A D   + L     +GQ++    R ++L    +
Sbjct: 747  GFVQALQDDRILVKLFNGLTVGVHKKFASDEPVSSLPDLLTLGQTLSVCFRGDVL----K 802

Query: 823  TGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
             G++  SL+ S     +      + E FL + +  M    K   +  K +  + IG V+ 
Sbjct: 803  NGQLARSLRFSHLYKEERPTGDDILESFLSDYQRVMSAMKKSKDAVEKKLAKYHIGQVVT 862

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFIT------HHQLAGATVESGSVIQAAILDVAKAERL 933
              +  S D GV    E+   V GF T      H          G  +QA +L V    + 
Sbjct: 863  VTIEASRDIGVTCVTED--GVKGFATLQSINEHDDDEDRKFTVGESVQAVVLYVDPLTKC 920

Query: 934  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 993
            ++LSLK         A S++ A+K       S  +  +Q + A V ++KE+++++ L E 
Sbjct: 921  LELSLKK----STYHAVSSKNAEK-------SLKVLPNQVIRAEVLLIKEDFVLVLLHE- 968

Query: 994  NHSIGYASV--SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 1051
             H++G  +   +  N   F +K   N  ++     A+  S T   +L  L+   E    +
Sbjct: 969  -HALGRMAFLPAMRNFNDFLEK---NLYTIGQVNQAVIKSVTPNGILANLQLHQEKRLQT 1024

Query: 1052 SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFS 1109
            +      S   +G   +A +T  K  ++ +K G    GRIH+T + D  D   ++ N FS
Sbjct: 1025 A-----PSLITLGKKCKAIVTGFKAQQVNVKVG-KHEGRIHVTNIADSVDDGTLLRNRFS 1078

Query: 1110 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169
                 Q V  R I     P   K    E + K S+L+  +  + ++      S+  R+ G
Sbjct: 1079 E---KQVVEVREITNQKSPVGMK----EYTTKESLLSTDDTSASVVH-----SVNDRIVG 1126

Query: 1170 YVYKV 1174
            +V KV
Sbjct: 1127 FVNKV 1131


>gi|395334532|gb|EJF66908.1| U3 snoRNP-associated protein Rrp5 [Dichomitus squalens LYAD-421
           SS1]
          Length = 1492

 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 227/846 (26%), Positives = 379/846 (44%), Gaps = 87/846 (10%)

Query: 21  KASKNQFKNSKKQINDAVE--AQDLALPPDDDVPVFPRGGGHSLTQRE----RDEIHAEV 74
           KA K + +   K+  D  E   Q ++    DD+  FPRGGG +LT  E    R E   EV
Sbjct: 17  KAKKTKTEEQSKKSKDKAEKPTQPVSFLVSDDID-FPRGGGTTLTPLEVKTLRAEAAKEV 75

Query: 75  DAEFEAVERGLHKKNKKKKKKTERK--ANETVDDLGSLFGDGISGKLPRYANKITLKNIS 132
           D E  A      +K+ K+K+K+E +  +N    D     G  I     +  +   L+ + 
Sbjct: 76  DKELFA---ATTEKSVKRKRKSEARGSSNSAAKDGKEKAGIRIEHLNYKTLHLTRLQRVV 132

Query: 133 AGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPI----LDNEIEAN 178
            GMK+ G V  V    L++ LP  L            L    ++++ +     D+E E +
Sbjct: 133 VGMKILGQVVAVEPLALIVSLPNQLFAHVPITHISTQLTHTLESMEDVEMGNSDDEDEDS 192

Query: 179 EDNLLPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKIWLSLRLSLLY 222
             + +P +F +   GQ V  +V             L    D+ +   R++ L+L    + 
Sbjct: 193 SPSGVPDLFEIFRPGQYVRAVVTAVHPPGTTDVSGLGRARDEVQKASRRVELNLVPEKVN 252

Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS-GIDVK--PGLL 279
           +G+    ++ G  ++A VKSIEDHGYIL  G+   +GFL   +  + S G + K   G L
Sbjct: 253 EGVVKSDLRTGFTMSAAVKSIEDHGYILDLGMSDVSGFLSFKDAQKGSWGTEKKLHIGQL 312

Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
           L   V  +    +   +S DP T+S     ++  +S   +VPG +V + V ++  +G++L
Sbjct: 313 LDVAVVKMSGNGRTCNVSVDPKTISTASITEVSNVSS--IVPGALVQSLVTAVQSDGLVL 370

Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSRAVGLTLNPYLLH 397
             L YF GT+D FHL    P  +    Y   +KV ARIL+ ++P T     L+L  +++ 
Sbjct: 371 QVLGYFDGTIDQFHLVPGQPEVH----YQVGQKVKARILYDINPSTPPRFALSLADHVVR 426

Query: 398 --NRAPPSHVK---------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA 446
              ++P +            +G I +  KV RV+   GL++++ S       ++ IS  +
Sbjct: 427 FTTKSPSADAATTDLRNAYPIGTILEAVKVARVESERGLVVNVGS---GIEGFIHISQTS 483

Query: 447 EEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           +E V  L      +K G   R R+ G+  L+G+    L+AS         +DV+ G V+K
Sbjct: 484 DEHVPTLSASSGAWKLGMVHRARVTGYYPLDGILQLSLRASVLGQKFLQVADVQVGEVIK 543

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
           G V  +      V   G V  +    H ++  +  P K+FK G+ L  RVL V  + KR+
Sbjct: 544 GTVKKLTDSALFVSISGNVDGVIWPNHYADIALKHPQKRFKPGSSLKCRVLVVDPERKRV 603

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
            +T KKTLV+S L  ++ +++A   ++TH  + K+      V  YN ++   P  E    
Sbjct: 604 ALTAKKTLVESTLPTITQFSDAQVGVLTHAVVFKVSDKSLQVELYNNLKATVPAREASET 663

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP----TRVSEDDLVKLGSLVSGVV 677
                SS + +G+ V+ RI +  P + RI  S         + +++   V +G +V GV+
Sbjct: 664 TVPSLSSAFPIGKPVQVRITAVDPETSRITASIRQASPNYKSAITDISGVDIGDIVEGVI 723

Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLD-NESS 735
             V  +  VV  +        +   +LA+  E +   ++S +K G +   L+V   N   
Sbjct: 724 SDVRKDKAVV-ALQPTQVTALLSLNNLANRREVSVAQLRSTLKTGDKLQDLVVTSRNPEK 782

Query: 736 NLLLSA-----KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
             +L A     K  L+    QL  D   + P  +V G V      G  V+    ++G   
Sbjct: 783 GFVLVAMKPKEKEQLVQK-NQLSIDT--VQPGQLVGGRVLRHARHGALVKITKAISGILH 839

Query: 791 RSKAVD 796
            + A D
Sbjct: 840 PTDACD 845



 Score =  120 bits (300), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 188/761 (24%), Positives = 319/761 (41%), Gaps = 108/761 (14%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            S+ S I P ++V   V  +   G  ++ LG   G   +   V GQ       Y VGQ V+
Sbjct: 345  SNVSSIVPGALVQSLVTAVQSDGLVLQVLGYFDGTIDQFHLVPGQP---EVHYQVGQKVK 401

Query: 814  SNIL-DVNSETG-RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
            + IL D+N  T  R  LSL       T  S                S+    ++L+    
Sbjct: 402  ARILYDINPSTPPRFALSLADHVVRFTTKS---------------PSADAATTDLR--NA 444

Query: 872  FIIGSVIEG-KVHE-SNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSV 919
            + IG+++E  KV    ++ G+VV+    S + GFI   Q +   V +          G V
Sbjct: 445  YPIGTILEAVKVARVESERGLVVNV--GSGIEGFIHISQTSDEHVPTLSASSGAWKLGMV 502

Query: 920  IQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
             +A +      + ++ LSL+ +V   +F +                  D+ V + +   V
Sbjct: 503  HRARVTGYYPLDGILQLSLRASVLGQKFLQV----------------ADVQVGEVIKGTV 546

Query: 979  EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 1038
            + + ++ L +S+      + + +       K PQK+F  G S+   V+ +       R  
Sbjct: 547  KKLTDSALFVSISGNVDGVIWPNHYADIALKHPQKRFKPGSSLKCRVLVVDPE----RKR 602

Query: 1039 LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
            + L A      S+     + S   VG L  A + ++    L+++        +   E ++
Sbjct: 603  VALTAKKTLVESTLPTITQFSDAQVGVLTHAVVFKVSDKSLQVELYNNLKATVPAREASE 662

Query: 1099 DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1158
                 V +L S F IG+ V  RI A    P+  +       I  S+   S      + + 
Sbjct: 663  ---TTVPSLSSAFPIGKPVQVRITAVD--PETSR-------ITASIRQASPNYKSAITDI 710

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAV 1216
              V IG  V G +  V  + A++ +       L  L++     E+   Q R     G  +
Sbjct: 711  SGVDIGDIVEGVISDVRKDKAVVALQPTQVTALLSLNNLANRREVSVAQLRSTLKTGDKL 770

Query: 1217 TGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
               V+ S N EK  + + ++P +     +   +S D +Q     G +VGGR+  +     
Sbjct: 771  QDLVVTSRNPEKGFVLVAMKPKEKEQLVQKNQLSIDTVQP----GQLVGGRV--LRHARH 824

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ-FDPLSGYDEGQFVKCKVLEISRTV 1334
            G +V+I   + G +H T        D    Y+ G+ F P+        +K  V+ I +  
Sbjct: 825  GALVKITKAISGILHPT--------DACDDYENGKPFPPVDS-----VLKAVVISIDKER 871

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNVTSK 1392
            R     +LSL        +T  S L    D P   + +  I DL     ++G++K+V   
Sbjct: 872  R-----QLSL--------TTRMSRLFPGQDKPIVDREITNISDLKVGETIRGFIKSVAEH 918

Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            G F+ L R +DA+V +  L D YV+  +  F   +LV GRVLSV    K+VE++ ++ D 
Sbjct: 919  GLFVTLGRDIDARVQIRELFDDYVKDWKSRFSANQLVKGRVLSVNIEKKQVELSFRSGDL 978

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            +  +Q ++  LS+L  G  V G++K+VE YG+FI IE + L
Sbjct: 979  KRDNQPQL-TLSDLSEGQKVDGRVKKVEDYGIFIAIEGSKL 1018


>gi|326532510|dbj|BAK05184.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 301

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 142/187 (75%), Gaps = 2/187 (1%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           V +G++VSGVV+ VTP AVVV V   G+SKG+I  EHLAD+      +K+++KPG+EF+Q
Sbjct: 102 VPVGTIVSGVVERVTPEAVVVSV--NGFSKGSILNEHLADYHGQTVRLKNLLKPGHEFNQ 159

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           LLVLD +  NL+LSAK+SLIN+   +PS+ S I    +VHGY+CNII+ GCFVRFLG LT
Sbjct: 160 LLVLDAKGQNLILSAKHSLINTRNDIPSELSQIQAGVIVHGYICNIIDGGCFVRFLGHLT 219

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           GF+P+ KAVD     LS  ++VGQSVRS++L+VN E+ R+ LSL+ S CSS D SF+Q +
Sbjct: 220 GFSPKDKAVDRPIEKLSDAFFVGQSVRSHVLNVNEESSRVKLSLQHSKCSSADCSFIQGY 279

Query: 847 FLLEEKI 853
           FLL++K+
Sbjct: 280 FLLDQKV 286



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE--------IVKPGKKF 543
           T++ V  G +V G V  V     +V   G  K      H++++         ++KPG +F
Sbjct: 98  TNTSVPVGTIVSGVVERVTPEAVVVSVNGFSKGSILNEHLADYHGQTVRLKNLLKPGHEF 157

Query: 544 KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
               +L+  VL  K + + ++ K +L+ ++  I S  ++    +I HG+I  I   GCFV
Sbjct: 158 N---QLL--VLDAKGQNLILSAKHSLINTRNDIPSELSQIQAGVIVHGYICNIIDGGCFV 212

Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           RF   + GF+P+ +    P  + S  + VGQ V+  +++    S R+ LS  
Sbjct: 213 RFLGHLTGFSPKDKAVDRPIEKLSDAFFVGQSVRSHVLNVNEESSRVKLSLQ 264


>gi|440466088|gb|ELQ35374.1| rRNA biogenesis protein RRP5 [Magnaporthe oryzae Y34]
 gi|440482704|gb|ELQ63171.1| rRNA biogenesis protein RRP5 [Magnaporthe oryzae P131]
          Length = 1808

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 328/1400 (23%), Positives = 585/1400 (41%), Gaps = 172/1400 (12%)

Query: 17   PKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEI--HAEV 74
            P+ + ASK++ K  K     +  A  +     +D P+FPRGGG  LT  E  +I   A  
Sbjct: 28   PRSDSASKSKDKADKPA---SAPAAPVVSKLKEDEPLFPRGGGSVLTPLEHKQIKVQASK 84

Query: 75   DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKIT------- 127
            D  FE  E G   K K+ +   + K  ++   L  L  +  S K+     K++       
Sbjct: 85   DVLFEQ-ESG-KSKGKEDRAPKKLKGKKSKTQLKELAKNADSVKIESLNFKVSERPQCAL 142

Query: 128  ----------------LKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL 171
                            ++ +  G  + G ++ ++  ++ I LP  + G  +A  ++   L
Sbjct: 143  VADLPFVGEHTDAATIIQRLVKGSLVLGQISAISALEVEISLPNNVTGHVKAT-SISTQL 201

Query: 172  DNEIE-----------ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIG---KRKIWLSLR 217
              +++            + +  L +I  VGQ V   V+   ++    G   KR+I LSL+
Sbjct: 202  TKKLQDAMEVDQEEEDDDSEIDLTSILSVGQYVRAYVVSTMEEPSTAGAKGKRRIELSLQ 261

Query: 218  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKP 276
              L   GLS   V E   +   + S+EDHGY++  G+ + TGFL +  + +  S   ++P
Sbjct: 262  PELANTGLSSADVVENSTVAGSISSVEDHGYVVDLGIQNLTGFLSKKEVDKGISAAQLEP 321

Query: 277  G----LLLQGVVRSIDR----TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
            G    LL+ GV   I +    T+K+  +   P T            +I+  +PG  V   
Sbjct: 322  GCVHLLLVTGVKGKIAQVSTLTKKLSNVQLFPGTAK----------TINTFLPGTAVDVL 371

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--A 386
            V  I   G+    +     T DI H        N +  Y    KV AR++   PTS    
Sbjct: 372  VSDISGRGLAGKVMGSLDVTADIIHSGLGPNGVNLEKKYKIGSKVKARVICNFPTSDNLK 431

Query: 387  VGLTLNPYL--LHNR--------APP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
            +G++L  +L  L  R         PP + +    I +Q  V +V+  +GL +D     V 
Sbjct: 432  LGISLLSHLTSLQPRNAKVDGKEVPPLTALPHSSIVEQCTVTKVEPDIGLFVDTGIEGV- 490

Query: 436  TPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
             P +V IS V + +V  L +    YK GS  R RI+G+  ++G+     + S  E     
Sbjct: 491  -PGFVHISRVKDGKVDALYEASGPYKTGSVHRGRIVGYNSMDGMYHLSFEKSILERQYLR 549

Query: 493  HSDVKPGMVV----KGKVIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
              DV    VV    +  ++  D   G IV+   G+    P  H+++  +  P KKF+ G 
Sbjct: 550  IEDVPIAEVVNVTIEKMIVKEDGLSGVIVKLADGITGFVPEMHLADIRLQHPEKKFREGL 609

Query: 548  ELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            ++  RVL V   +  + +T KKTLV S+ A +  + EA+      G I KI+  G FV+F
Sbjct: 610  KVKARVLSVDPAKNQLRLTFKKTLVNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQF 669

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
            Y  ++GF P  E+      +P+  +  GQVV   ++S  P  RR+ +S         E  
Sbjct: 670  YGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQ 729

Query: 666  L----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKP 720
            +    +K+G LVSG V   + + V +  +     K  +   HL D          S I+ 
Sbjct: 730  MALQKLKVGDLVSGSVTEKSEDNVFLE-LKDSSLKAVLRAHHLTDKSPSKNQSALSKIRV 788

Query: 721  GYEFDQLLVLDNESS--NLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETG 776
            G   + L+VL+ +    +++LS K SL+ ++Q  Q  +  +      +V G+V NI  T 
Sbjct: 789  GQTLEDLVVLEKDEGRRSIVLSLKPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTA 848

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--- 833
             FV+F G LT   P+S      +A       + Q++   +  V  E  R+ +S+  +   
Sbjct: 849  VFVQFGGNLTALLPKSMISTQNQALEDFGLRLHQAIEVKVHSV--EDKRLVVSMPDAEAP 906

Query: 834  -----------CCSSTDASFMQEH-----FLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
                         ++ DAS           + + +IA ++ ++ N           +   
Sbjct: 907  KDTKPRHEAKPVSNAVDASITSTDDISVGTVTKARIASIKKTQLN---------VALADN 957

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVD 935
            ++G+V  S  F          D +  IT+ +   +      +I   ++ V  A+  R + 
Sbjct: 958  VQGRVDISEVF----------DSWDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFLP 1007

Query: 936  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 994
             S +T        A  +    K + K  A  D+    +    V   ++ +L ++L P   
Sbjct: 1008 FSHRTANSVLELTAKPSSVRAKGQYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAVR 1067

Query: 995  HSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 1053
              I  + VSD ++  K  ++ F  G ++ A V+A+ + +  G+L L  ++    E    +
Sbjct: 1068 GRIRSSEVSDDSSHGKDLRQNFPVGTALRARVLAVDADN--GKLDLSARSARPNEHMKWE 1125

Query: 1054 RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 1113
              +K       +++ A +T++   ++  +        + I ++NDD  +      +  K 
Sbjct: 1126 ELEKD------TVMHARVTKVNDRQVFFQISDSVAAPVQIIDLNDDYDHA-----NPLKY 1174

Query: 1114 GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYV 1171
             +    R+   S   + KK     LS + S +  SE  +  K +     +  G  + G+V
Sbjct: 1175 SKNDIVRVSVVSIDKNHKK---LRLSARESRVLSSELPVKDKEITSVSQIEQGTILRGFV 1231

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              V ++   +T+   + A + I D     + L++++  F + + V G V S++K      
Sbjct: 1232 KNVSDKGLFVTLGGDVTALVRISD--LSDAFLKDWKEHFQVDQLVKGRVTSVDK------ 1283

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
              L   Q  +    VD     +  +  + EG ++ G++ K+      +++    ++ G  
Sbjct: 1284 -TLGHVQMSLKASAVDEDYKPLPGYGDLKEGQVITGKVRKVADFGAFILIDKSANVSGLC 1342

Query: 1290 HFTELKNICVSDPLSGYDEG 1309
            H TE+ +  V D    Y EG
Sbjct: 1343 HRTEMADKPVKDATKLYREG 1362



 Score =  140 bits (354), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 213/973 (21%), Positives = 399/973 (41%), Gaps = 183/973 (18%)

Query: 593  ITKIEKH-GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            +TK+E   G FV     GV GF   S +    +D   E S  Y  G V + RI+      
Sbjct: 472  VTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRIVGYNSMD 531

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSL-VSGVVDVVTPNAVV--------VYVIAKGYSKGT 698
               +LSF      + E   +++  + ++ VV+V     +V        +  +A G + G 
Sbjct: 532  GMYHLSF---EKSILERQYLRIEDVPIAEVVNVTIEKMIVKEDGLSGVIVKLADGIT-GF 587

Query: 699  IPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
            +P  HLAD  L+H    +   + G +   ++L +D   + L L+ K +L+NS      D 
Sbjct: 588  VPEMHLADIRLQHP---EKKFREGLKVKARVLSVDPAKNQLRLTFKKTLVNSEAAPIKDF 644

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
                    V G +  I   G FV+F G L GF P  +  +    D ++ +  GQ V  ++
Sbjct: 645  GEASVGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHV 704

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            + V+ E  R+ +S K               F +E+++A+              +   +G 
Sbjct: 705  ISVDPERRRLVVSCKDPAA-----------FGVEKQMAL--------------QKLKVGD 739

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHH---------QLAGATVESGSVIQ-AAILD 926
            ++ G V E ++  V +  ++ S       HH         Q A + +  G  ++   +L+
Sbjct: 740  LVSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVGQTLEDLVVLE 799

Query: 927  VAKAERLVDLSLKTV---------FIDRFREANSNRQAQKKKR----------------- 960
              +  R + LSLK           F+    +A   +  Q   R                 
Sbjct: 800  KDEGRRSIVLSLKPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTAVFVQFGGNLTA 859

Query: 961  ---------KREASKDLGV--HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                     + +A +D G+  HQ +   V  V++  LV+S+P+          ++     
Sbjct: 860  LLPKSMISTQNQALEDFGLRLHQAIEVKVHSVEDKRLVVSMPD----------AEAPKDT 909

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQA 1069
             P+ +            A P S+          A+  + TS+           VG++ +A
Sbjct: 910  KPRHE------------AKPVSN----------AVDASITSTD-------DISVGTVTKA 940

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
             I  IK  +L +       GR+ I+EV D  D+    ++  S F   Q +  R+I   + 
Sbjct: 941  RIASIKKTQLNVALADNVQGRVDISEVFDSWDEITNAKDPLSKFTQNQIIDVRVIGVHDA 1000

Query: 1128 PDMK--------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
             + +         + + EL+ KPS  +V   G        DV  G     +V   +++W 
Sbjct: 1001 RNYRFLPFSHRTANSVLELTAKPS--SVRAKGQYKPLAMADVKAGSSWLTFVNNNEDKWL 1058

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
             + +S  ++ ++   + + + S  ++ ++ F +G A+   VL+++ +   L L  R  + 
Sbjct: 1059 WVNLSPAVRGRIRSSEVSDDSSHGKDLRQNFPVGTALRARVLAVDADNGKLDLSARSAR- 1117

Query: 1240 GISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
                      N++M+    E D ++  R++K+      +  QI   +   V   +L +  
Sbjct: 1118 ---------PNEHMKWEELEKDTVMHARVTKV--NDRQVFFQISDSVAAPVQIIDLND-- 1164

Query: 1299 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1358
                   YD    +PL  Y +   V+  V+ I +      H +L L       S+  S  
Sbjct: 1165 ------DYDHA--NPLK-YSKNDIVRVSVVSIDKN-----HKKLRL-------SARESRV 1203

Query: 1359 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1418
            LS+++    K +  +  +    I++G+VKNV+ KG F+ L   + A V +S+LSD +++ 
Sbjct: 1204 LSSELPVKDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVTALVRISDLSDAFLKD 1263

Query: 1419 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1478
             ++ F + +LV GRV SV+     V+++LK S +       +    +L  G ++ G++++
Sbjct: 1264 WKEHFQVDQLVKGRVTSVDKTLGHVQMSLKAS-AVDEDYKPLPGYGDLKEGQVITGKVRK 1322

Query: 1479 VESYGLFITIENT 1491
            V  +G FI I+ +
Sbjct: 1323 VADFGAFILIDKS 1335



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 197/909 (21%), Positives = 346/909 (38%), Gaps = 155/909 (17%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G  V+  +G+ GF P   L       P   +  G  VK R++S  PA  ++ L+F  K T
Sbjct: 575  GVIVKLADGITGFVPEMHLADIRLQHPEKKFREGLKVKARVLSVDPAKNQLRLTF--KKT 632

Query: 660  RV-SEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
             V SE   +K      +G  V G +  + P  +  +V   G  +G +P   +++      
Sbjct: 633  LVNSEAAPIKDFGEASVGQQVQGTIVKIKP--IGAFVQFYGTLRGFLPIGEMSESF---- 686

Query: 713  VMKSVIKPGYEFD-------QLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSV 764
                +  P   F         ++ +D E   L++S K  +     +Q+      +    +
Sbjct: 687  ----IRDPNEHFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQMA--LQKLKVGDL 740

Query: 765  VHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSNILDV 819
            V G V    E   F+           R+     K+    ++ LSK   VGQ++  +++ +
Sbjct: 741  VSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSKNQSALSK-IRVGQTLE-DLVVL 798

Query: 820  NSETGR--ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
              + GR  I LSLK S   ++                       NG  L  +    +G +
Sbjct: 799  EKDEGRRSIVLSLKPSLVKAS----------------------QNGQFLTTLADAKVGKL 836

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA-KAERLVDL 936
            ++G V       V V F    ++   +    +        S    A+ D   +  + +++
Sbjct: 837  VQGFVRNITPTAVFVQF--GGNLTALLPKSMI--------STQNQALEDFGLRLHQAIEV 886

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASK--------------DLGVHQTVNAIVEIVK 982
             + +V   R   +  + +A K  + R  +K              D+ V     A +  +K
Sbjct: 887  KVHSVEDKRLVVSMPDAEAPKDTKPRHEAKPVSNAVDASITSTDDISVGTVTKARIASIK 946

Query: 983  ENYLVLSLPE-----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA---------L 1028
            +  L ++L +      + S  + S  +    K P  +F   Q +   V+          L
Sbjct: 947  KTQLNVALADNVQGRVDISEVFDSWDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFL 1006

Query: 1029 P-SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
            P S  TA  +L L    S        +    +    GS     +   +   L +      
Sbjct: 1007 PFSHRTANSVLELTAKPSSVRAKGQYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAV 1066

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
             GRI  +EV+DD S+  ++L  NF +G  + AR++A     D  K  L   S +P+    
Sbjct: 1067 RGRIRSSEVSDDSSHG-KDLRQNFPVGTALRARVLAVD--ADNGKLDLSARSARPN---- 1119

Query: 1148 SEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWALLTISRHLKA--QLFILDSAYEPSEL 1203
                  + +EE   D  +  RVT    KV++      IS  + A  Q+  L+  Y+ +  
Sbjct: 1120 ----EHMKWEELEKDTVMHARVT----KVNDRQVFFQISDSVAAPVQIIDLNDDYDHANP 1171

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
             ++ +       V   V+SI+K  K LRL  R  +   S+  V        + I +G I+
Sbjct: 1172 LKYSK----NDIVRVSVVSIDKNHKKLRLSARESRVLSSELPVKDKEITSVSQIEQGTIL 1227

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G +  +     GL V +G  +   V  ++L +  + D    +   Q D        Q V
Sbjct: 1228 RGFVKNVSDK--GLFVTLGGDVTALVRISDLSDAFLKDWKEHF---QVD--------QLV 1274

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            K +V  + +T+    HV++SL++S               VD   K L    DL    ++ 
Sbjct: 1275 KGRVTSVDKTLG---HVQMSLKASA--------------VDEDYKPLPGYGDLKEGQVIT 1317

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            G V+ V   G FI++ +  +   L   + ++D  V+   K +  G  V   +LSV+   K
Sbjct: 1318 GKVRKVADFGAFILIDKSANVSGLCHRTEMADKPVKDATKLYREGDSVKAIILSVDAAKK 1377

Query: 1442 RVEVTLKTS 1450
            +V   LK S
Sbjct: 1378 KVSFGLKPS 1386



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 162/404 (40%), Gaps = 62/404 (15%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMKK---SFLWEL-SIKPSMLTV--------SEIGSK 1153
            NL   +KIG  V AR+I      D  K   S L  L S++P    V        + +   
Sbjct: 405  NLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKEVPPLTALPHS 464

Query: 1154 LLFEECDVSIGQRVTGYVYKVDNEW--ALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
             + E+C V+  +   G       E     + ISR    ++  L  A  P +     R   
Sbjct: 465  SIVEQCTVTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRI 524

Query: 1212 IGKAVTGHVLSINKEKKLL-RLVLRPFQDGISDKTV-DISNDNMQTFIHEGDIVGGRISK 1269
            +G      +  ++ EK +L R  LR     I D  + ++ N  ++  I + D + G I K
Sbjct: 525  VGYNSMDGMYHLSFEKSILERQYLR-----IEDVPIAEVVNVTIEKMIVKEDGLSGVIVK 579

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
            +  G+ G V    P ++       L +I +  P     E +F       EG  VK +VL 
Sbjct: 580  LADGITGFV----PEMH-------LADIRLQHP-----EKKFR------EGLKVKARVLS 617

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
            +         + L+ + +L              V++    ++   + S    VQG +  +
Sbjct: 618  VDPAKN---QLRLTFKKTL--------------VNSEAAPIKDFGEASVGQQVQGTIVKI 660

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
               G F+     L   + +  +S+ ++  P + F  G++V   V+SV+P  +R+ V+ K 
Sbjct: 661  KPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCK- 719

Query: 1450 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             D       +   L  L VGD+V G +       +F+ +++++L
Sbjct: 720  -DPAAFGVEKQMALQKLKVGDLVSGSVTEKSEDNVFLELKDSSL 762


>gi|358399275|gb|EHK48618.1| hypothetical protein TRIATDRAFT_145463 [Trichoderma atroviride IMI
           206040]
          Length = 1793

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 232/816 (28%), Positives = 355/816 (43%), Gaps = 102/816 (12%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEVDA------EFEAVERGLHKKNKKKK----KKTER 98
           DD PVFPRGGG  LT  E+ +I  E  A      EFE   +   KK KK      KKTE+
Sbjct: 65  DDEPVFPRGGGSVLTPLEQKKIQMEAKADAIREEEFETSAKPQKKKVKKSAAKGDKKTEK 124

Query: 99  KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
           KA+E    + SL                  K +  G  + G V ++N+ +L I LP  L 
Sbjct: 125 KADEDTIKIESL----------------NFKRLVKGSLVLGQVTKINKLNLEISLPNNLT 168

Query: 159 GLARAADALDPILDNEIEANEDNL---------------LPTIFHVGQLVSCIVLQLDDD 203
           G A     +   L + +E   D                 L +IF VGQ V   V+   D 
Sbjct: 169 GHASIV-TISEQLTSRLEGGADKESDSDEEESSDESDINLQSIFKVGQYVRAYVVSTSDS 227

Query: 204 KKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
                GK+KI LSLR S    GL  + V     + A V S+ED G ++  G+P+  GFLP
Sbjct: 228 TASGKGKKKIELSLRPSETNTGLEKDDVVPNSTVMASVVSVEDRGCVMDLGIPNLNGFLP 287

Query: 263 RNNLAENSGID-------VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG-- 313
                 NS ID       ++PG +    V       K V LS   D +    TK L G  
Sbjct: 288 ------NSEIDPLIDHERLQPGAVFLCQVTG-KGAAKTVQLSLMQDKLGS--TKALPGDA 338

Query: 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            +I+  +PG +V+  V      G+    +     T D+ H        + K  Y    KV
Sbjct: 339 TTINTFLPGTLVNILVSENEGRGLGGKIMGAVDATADLIHSGVGPNDADLKAKYKVGSKV 398

Query: 374 NARILFVDPTSR--AVGLTLNPYLL-------------HNRAPPSHVKVGDIYDQSKVVR 418
            ARI+   PT++   +G++L P+++                 P   + +    ++  V  
Sbjct: 399 KARIICNFPTAKDPKLGISLLPHIMSLTRKRQDTKSKTEQPLPIEVMPISSFVEKCTVRH 458

Query: 419 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEG 475
           V+  +GL +D     +    +V IS V + +V  L +    YK G+  R RI+G+  ++G
Sbjct: 459 VEDNIGLFVDTGVAGLG--GFVHISRVKDGKVDALYETSGPYKVGTVHRGRIVGYNEMDG 516

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPH 530
           L +     S  +       DV  G V+ G++  +        G I++   G+    P  H
Sbjct: 517 LFSISFAKSILDQQYIRVEDVPIGSVINGEIEKLVIKEQGVTGLIIKVAEGITGFVPENH 576

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
           +S+  +  P KKF+VG ++  RVL      +++ +T KKTLV S+   + SY E +  + 
Sbjct: 577 LSDIRLQNPEKKFRVGMKVKARVLSTNPLKRQMRLTLKKTLVNSEAPTIKSYDEVSIGMQ 636

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
           T G I K++K+G  V+FY  ++GF P SE+      +P   +  GQV+    +   P +R
Sbjct: 637 TLGTIVKVQKNGAHVQFYGHLKGFLPVSEMSEAYIRDPMEHFRAGQVLSVHALEVDPEAR 696

Query: 649 RINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R  +S      F +      +D  +KLG +VS  V   T + + V ++     K  +P  
Sbjct: 697 RFIVSCKDPSAFGLDKQTALKD--LKLGDVVSAKVTQKTEDQIFVELVDSQL-KAILPVG 753

Query: 703 HLADHLEHATVMK-SVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSAQQ--LPSDAS 757
           HL D            I  G     L+VL+ NE+   + L+ K SL+ ++Q+  L     
Sbjct: 754 HLTDKSSSKNQYAWKRISTGQTLSDLVVLEKNENRRAITLTQKPSLVKASQENKLLKSFH 813

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
                ++V G+V NI  T  FV+F G L    PR +
Sbjct: 814 DAKVGAIVQGFVRNITVTAVFVQFAGNLNALLPRGR 849



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 205/912 (22%), Positives = 402/912 (44%), Gaps = 124/912 (13%)

Query: 620  LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGV 676
            +D   E S  Y VG V + RI+         ++SF   ++    +  +D V +GS+++G 
Sbjct: 488  VDALYETSGPYKVGTVHRGRIVGYNEMDGLFSISFAKSILDQQYIRVED-VPIGSVINGE 546

Query: 677  VD--VVTPNAVVVYVI--AKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLD 731
            ++  V+    V   +I  A+G + G +P  HL+D  L++    +   + G +    ++  
Sbjct: 547  IEKLVIKEQGVTGLIIKVAEGIT-GFVPENHLSDIRLQNP---EKKFRVGMKVKARVLST 602

Query: 732  NE-SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
            N     + L+ K +L+NS          +       G +  + + G  V+F G L GF P
Sbjct: 603  NPLKRQMRLTLKKTLVNSEAPTIKSYDEVSIGMQTLGTIVKVQKNGAHVQFYGHLKGFLP 662

Query: 791  RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
             S+  +    D  + +  GQ +  + L+V+ E  R  +S K               F L+
Sbjct: 663  VSEMSEAYIRDPMEHFRAGQVLSVHALEVDPEARRFIVSCKDPSA-----------FGLD 711

Query: 851  EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 910
            ++ A+         +LK      +G V+  KV +  +  + V   + S +   +    L 
Sbjct: 712  KQTAL--------KDLK------LGDVVSAKVTQKTEDQIFVELVD-SQLKAILPVGHL- 755

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASKD 967
              T +S S  Q A   ++  + L DL +         E N NR+A    +K    +AS++
Sbjct: 756  --TDKSSSKNQYAWKRISTGQTLSDLVV--------LEKNENRRAITLTQKPSLVKASQE 805

Query: 968  LGVHQT-----VNAIVEIVKENYLVLS------------LPEYNHSIGYASVSDYNTQKF 1010
              + ++     V AIV+    N  V +            LP         +  D+  +KF
Sbjct: 806  NKLLKSFHDAKVGAIVQGFVRNITVTAVFVQFAGNLNALLPRGRLPADVQAQPDFGMRKF 865

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
               +      ++AT+  L     A     L+      +  SSK    +     GS  + +
Sbjct: 866  ESIEV----KIVATIPELKRILVAPADAPLVIESEGNKGKSSKAPAPEDGLSFGSTTKVK 921

Query: 1071 ITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIAKSNK 1127
            +T +K  +L ++       GR+ ++++ D   ++++  +    F   Q +  +I+   + 
Sbjct: 922  VTSVKDTQLNVQLVDSETQGRLDVSQIFDKWEDILDPKDPLGKFSKTQVLRVKIMGVHDA 981

Query: 1128 PDMK--------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
             D +           + EL+ KPS L   E    + FE  D+ +G     +V  V +++ 
Sbjct: 982  KDHRYLPFSHRSAHSVLELTSKPSDLGDEE-PKPITFE--DLKVGDNRIAFVNNVTSQYL 1038

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
             + +S +++ ++ I+D++ + S L + +  F +G A+   V S++ + K L L       
Sbjct: 1039 WVNLSPNVRGRISIMDASDDLSLLNDLEANFPVGSAIKVRVTSVDAKNKRLDL------- 1091

Query: 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
              S ++ + S       + +  ++ G+I+K+      ++V++   + G VH  ++ +   
Sbjct: 1092 --SARSPNASETITWASLKQNMVLPGKITKV--NERQVLVKLSEAVSGPVHLPDMVD--- 1144

Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1359
                   D G  D L  Y +G  V+  ++++  + +    + LS+R S   MSST     
Sbjct: 1145 -------DYGTVDTLK-YKKGDIVRVSIVDVDASNK---RIRLSMRPSRI-MSST----- 1187

Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1419
               +    K + KI  LS   IV+G+VKNV  KG F++L  ++   V +SNLSD +++  
Sbjct: 1188 ---LPVADKEISKIAQLSTGDIVRGFVKNVADKGVFVLLGGQVTGFVKISNLSDRFLKEW 1244

Query: 1420 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479
            +  F + +LV GRV++++  + ++E++LK+S      +  +   +++  G IV G +++V
Sbjct: 1245 KDSFQVDQLVKGRVIALDAATSQLELSLKSSVVDEDYKPPV-GYNDIKEGQIVTGVVRKV 1303

Query: 1480 ESYGLFITIENT 1491
            E +G FI I+N+
Sbjct: 1304 EEFGAFIVIDNS 1315



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 154/377 (40%), Gaps = 71/377 (18%)

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK----------PDMKKSFLWE 1137
             GRI I + +DD S ++ +L +NF +G  +  R+ +   K          P+  ++  W 
Sbjct: 1047 RGRISIMDASDDLS-LLNDLEANFPVGSAIKVRVTSVDAKNKRLDLSARSPNASETITWA 1105

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
             S+K +M+                     + G + KV+    L+ +S  +   + + D  
Sbjct: 1106 -SLKQNMV---------------------LPGKITKVNERQVLVKLSEAVSGPVHLPDMV 1143

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF- 1256
             +   +     ++  G  V   ++ ++   K +RL +RP +  I   T+ +++  +    
Sbjct: 1144 DDYGTVDTL--KYKKGDIVRVSIVDVDASNKRIRLSMRPSR--IMSSTLPVADKEISKIA 1199

Query: 1257 -IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
             +  GDIV G +  +     G+ V +G  + G V  + L +  + +     D  Q D   
Sbjct: 1200 QLSTGDIVRGFVKNVADK--GVFVLLGGQVTGFVKISNLSDRFLKE---WKDSFQVD--- 1251

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
                 Q VK +V+ +      T  +ELSL+SS+              VD   K      D
Sbjct: 1252 -----QLVKGRVIALDA---ATSQLELSLKSSV--------------VDEDYKPPVGYND 1289

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRV 1433
            +    IV G V+ V   G FI++    +   L   + ++D  V+   K +  G  V  RV
Sbjct: 1290 IKEGQIVTGVVRKVEEFGAFIVIDNSANVSGLCHRTQMADNAVKDATKLYKEGDKVKARV 1349

Query: 1434 LSVEPLSKRVEVTLKTS 1450
            L V+P  +R+   LK S
Sbjct: 1350 LEVDPTKRRISFGLKPS 1366



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 143/339 (42%), Gaps = 39/339 (11%)

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
           G+++      TG V   HL +     N +  +    KV AR+L  +P  R + LTL   L
Sbjct: 559 GLIIKVAEGITGFVPENHLSD-IRLQNPEKKFRVGMKVKARVLSTNPLKRQMRLTLKKTL 617

Query: 396 LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY------VTISDVAEEE 449
           +++ AP         YD+  +    + LG ++ +         Y      + +S+++E  
Sbjct: 618 VNSEAPTIKS-----YDEVSIGM--QTLGTIVKVQKNGAHVQFYGHLKGFLPVSEMSEAY 670

Query: 450 VRKLEKKYKEGSCVRVRIL-----GFRHL----EGLATGILKASAFEGLVFTHSDVKPGM 500
           +R   + ++ G  + V  L       R +    +  A G+ K +A +       D+K G 
Sbjct: 671 IRDPMEHFRAGQVLSVHALEVDPEARRFIVSCKDPSAFGLDKQTALK-------DLKLGD 723

Query: 501 VVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVK---PGKKFKVG---AELVFRV 553
           VV  KV         V+     +KA+ P+ H+++    K     K+   G   ++LV   
Sbjct: 724 VVSAKVTQKTEDQIFVELVDSQLKAILPVGHLTDKSSSKNQYAWKRISTGQTLSDLVVLE 783

Query: 554 LGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
                + IT+T K +LVK+     +L S+ +A    I  G++  I     FV+F   +  
Sbjct: 784 KNENRRAITLTQKPSLVKASQENKLLKSFHDAKVGAIVQGFVRNITVTAVFVQFAGNLNA 843

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
             PR  L  D   +P       + ++ +I+++IP  +RI
Sbjct: 844 LLPRGRLPADVQAQPDFGMRKFESIEVKIVATIPELKRI 882



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 17/269 (6%)

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
            LE  +  GS ++VR+      +     +   S       T + +K  MV+ GK+  V+  
Sbjct: 1065 LEANFPVGSAIKVRVTSV-DAKNKRLDLSARSPNASETITWASLKQNMVLPGKITKVNER 1123

Query: 513  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT-L 569
              +V+    V     LP M +        K+K G  +   ++ V +  KRI ++ + + +
Sbjct: 1124 QVLVKLSEAVSGPVHLPDMVDDYGTVDTLKYKKGDIVRVSIVDVDASNKRIRLSMRPSRI 1183

Query: 570  VKSKLAI----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625
            + S L +    +S  A+ +   I  G++  +   G FV     V GF   S L      E
Sbjct: 1184 MSSTLPVADKEISKIAQLSTGDIVRGFVKNVADKGVFVLLGGQVTGFVKISNLSDRFLKE 1243

Query: 626  PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-------DLVKLGSLVSGVVD 678
                + V Q+VK R+++   A+ ++ LS  +K + V ED       + +K G +V+GVV 
Sbjct: 1244 WKDSFQVDQLVKGRVIALDAATSQLELS--LKSSVVDEDYKPPVGYNDIKEGQIVTGVVR 1301

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
             V      + +       G      +AD+
Sbjct: 1302 KVEEFGAFIVIDNSANVSGLCHRTQMADN 1330



 Score = 48.5 bits (114), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 139/321 (43%), Gaps = 37/321 (11%)

Query: 284  VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
            V S+D   K + LS+     S+ +T     +  ++++PG     ++  + E  V++    
Sbjct: 1079 VTSVDAKNKRLDLSARSPNASETIT--WASLKQNMVLPG-----KITKVNERQVLVKLSE 1131

Query: 344  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP- 402
              +G V +  + + + T +    Y +   V   I+ VD +++ + L++ P  + +   P 
Sbjct: 1132 AVSGPVHLPDMVDDYGTVDTLK-YKKGDIVRVSIVDVDASNKRIRLSMRPSRIMSSTLPV 1190

Query: 403  --------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 454
                    + +  GDI         D+G+ +LL    T      +V IS++++  +++ +
Sbjct: 1191 ADKEISKIAQLSTGDIVRGFVKNVADKGVFVLLGGQVT-----GFVKISNLSDRFLKEWK 1245

Query: 455  KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGMVVKGKVI 507
              ++    V+ R++        AT  L+ S    +V         ++D+K G +V G V 
Sbjct: 1246 DSFQVDQLVKGRVIAL----DAATSQLELSLKSSVVDEDYKPPVGYNDIKEGQIVTGVVR 1301

Query: 508  AVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITV 563
             V+ FGA  ++     V  LC    M++  +    K +K G ++  RVL V    +RI+ 
Sbjct: 1302 KVEEFGAFIVIDNSANVSGLCHRTQMADNAVKDATKLYKEGDKVKARVLEVDPTKRRISF 1361

Query: 564  THKKTLVKSKLAILSSYAEAT 584
              K +  + +   + S A A 
Sbjct: 1362 GLKPSFFEDEDTDMESDAGAA 1382



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 124/303 (40%), Gaps = 42/303 (13%)

Query: 115  ISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE 174
            +S + P  +  IT  ++   M L G + +VNE+ +++ L   + G     D +D      
Sbjct: 1091 LSARSPNASETITWASLKQNMVLPGKITKVNERQVLVKLSEAVSGPVHLPDMVDDY---- 1146

Query: 175  IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL--------- 225
                 D L    +  G +V   ++ +D   K     +I LS+R S +             
Sbjct: 1147 --GTVDTLK---YKKGDIVRVSIVDVDASNK-----RIRLSMRPSRIMSSTLPVADKEIS 1196

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQ 281
             +  +  G ++  +VK++ D G  +  G    TGF+  +NL++    + K       L++
Sbjct: 1197 KIAQLSTGDIVRGFVKNVADKGVFVLLG-GQVTGFVKISNLSDRFLKEWKDSFQVDQLVK 1255

Query: 282  GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG-ISIDLLVPGMMVSTRVQSILENGVMLS 340
            G V ++D     + LS      S  V +D K  +  + +  G +V+  V+ + E G  + 
Sbjct: 1256 GRVIALDAATSQLELS----LKSSVVDEDYKPPVGYNDIKEGQIVTGVVRKVEEFGAFI- 1310

Query: 341  FLTYFTGTVDIFHL-QNTFPTTNWKND----YNQHKKVNARILFVDPTSRAVGLTLNPYL 395
                   + ++  L   T    N   D    Y +  KV AR+L VDPT R +   L P  
Sbjct: 1311 ---VIDNSANVSGLCHRTQMADNAVKDATKLYKEGDKVKARVLEVDPTKRRISFGLKPSF 1367

Query: 396  LHN 398
              +
Sbjct: 1368 FED 1370


>gi|340959662|gb|EGS20843.1| hypothetical protein CTHT_0026810 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 1796

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 236/893 (26%), Positives = 399/893 (44%), Gaps = 74/893 (8%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPP----DDDVPVFPRG 57
            +S+ KS++  S +  K  K   N+     KQ+     A+ +  P      D+ P+FPRG
Sbjct: 12  GSSASKSKRAKSGETTKDTKIDSNK---DAKQLKTPAVAKPITTPVVTVLKDEEPLFPRG 68

Query: 58  GGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGI 115
           GG  LT  E+ +I   A+ D  FE  ++G     +    ++++K    +++  +   D  
Sbjct: 69  GGSVLTPLEQKQISIQAKKDVLFEEAKKG---GKEDTAARSKKKRKSKIEEPATKSKDED 125

Query: 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL- 171
           S K+      +  K +  G  + G +  ++  ++ + LP  L G   +   +++L   L 
Sbjct: 126 SVKI----ESLNFKRLVKGSLVLGTICGISPLEIAVALPNNLIGHVPITAISESLTQRLQ 181

Query: 172 ---------DNEIEANEDNL----LPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLR 217
                    D E   +E+NL    +    H+GQ V   V+  +D+      +R I LSL 
Sbjct: 182 ALQANGEKGDGEESGDENNLDDIDINLFVHLGQYVRAYVVSTIDESVAGKTRRHIELSLY 241

Query: 218 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID-V 274
            +    GLS + +     L A V S+EDHG+++  G+      GFLPR  L  +   + V
Sbjct: 242 PAHANSGLSEQDIVLNSTLMASVVSVEDHGFVMDIGISDSQLKGFLPRKQLDPSIPEETV 301

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
           +PG +L  +V     + KVV LS+  D +        +  +ID  +PG      V  +  
Sbjct: 302 QPGSVLLCIVTGKAASGKVVQLSTLVDRLGNPKHFPAEATTIDTFLPGTAAEVLVSEVHT 361

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLN 392
           +G++   + +   T DI H  +     +  N Y    +V AR++   PT+    +G++L 
Sbjct: 362 HGLVGKVMGHLDVTADIVHSGSGPDGADLVNQYKVGSRVKARVICNFPTANKPKLGISLL 421

Query: 393 PYLLHNRAPPSHVKVGD------------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
           P++L  + P +  K G             I  + +V RV+ G+GL +++    VS   +V
Sbjct: 422 PHVLSLK-PKTTTKDGQEVLPTDVLAHSAIIQECRVERVEPGIGLYVNVGVEGVS--GFV 478

Query: 441 TISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
            IS V + ++  L +    YK GS    R++G+   +G+    L+ S  E       D+ 
Sbjct: 479 HISRVKDGKIDTLFENSGPYKIGSVHPGRVVGYNSFDGVYLLSLEKSVLEQPFLRIEDIP 538

Query: 498 PGMVVKGKV----IAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            G VV G+V    +    FG  IV+   G+  L P  H+S+  +  P KKF+ G ++  R
Sbjct: 539 IGAVVSGQVEKLVVNTQGFGGLIVKIAEGISGLVPEMHVSDVHLQHPEKKFREGMKVKAR 598

Query: 553 VLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL     R  + +T KKTLV S    + SY E    +   G I  + +HG  V+FY  ++
Sbjct: 599 VLSTNPARHQVRLTLKKTLVNSDAPAIKSYDELAVGMQAFGTIVAVLQHGAIVQFYGQLR 658

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 666
           GF P SE+      +P   + VGQ V   ++S  P   R+ +S         E  L    
Sbjct: 659 GFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPEVARLIVSCKDPSAFGLEKQLALKK 718

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFD 725
           +++G +VS  V   T + V V +I     K  +P  HL D   + T      I       
Sbjct: 719 LQVGDVVSAKVTQKTEDDVFVELIDSSL-KAILPVGHLTDKSVNKTQAALKRIHVNQTLT 777

Query: 726 QLLVLD-NES-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           +L+VL+ NE   +++LS K SL+ + ++  L S          V G+V NI  +  FV+F
Sbjct: 778 ELVVLEKNEGRRSIILSHKPSLVQAGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQF 837

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             +LT   P+S          +   +  QS+   I  ++ E GR+ +++  + 
Sbjct: 838 GSKLTALLPKSLMPQDWHDKPNFGLHKYQSLLVKITSIDKELGRLVVAIPSAA 890



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 235/1057 (22%), Positives = 459/1057 (43%), Gaps = 154/1057 (14%)

Query: 488  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKA--LCPLPHMSEFEIVKPGKKF 543
            G V  H DV   +V  G     D    + Q+  G  VKA  +C  P  +         K 
Sbjct: 366  GKVMGHLDVTADIVHSGS--GPDGADLVNQYKVGSRVKARVICNFPTAN---------KP 414

Query: 544  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCF 602
            K+G  L+  VL +K K        T  K    +L +   A   +I    + ++E   G +
Sbjct: 415  KLGISLLPHVLSLKPK--------TTTKDGQEVLPTDVLAHSAIIQECRVERVEPGIGLY 466

Query: 603  VRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SF 654
            V     GV GF   S +    +D   E S  Y +G V   R++  +S      ++L  S 
Sbjct: 467  VNVGVEGVSGFVHISRVKDGKIDTLFENSGPYKIGSVHPGRVVGYNSFDGVYLLSLEKSV 526

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLE 709
            + +P    ED  + +G++VSG V+ +  N      ++  IA+G S G +P  H++D HL+
Sbjct: 527  LEQPFLRIED--IPIGAVVSGQVEKLVVNTQGFGGLIVKIAEGIS-GLVPEMHVSDVHLQ 583

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
            H    +   + G +    ++  N + + + L+ K +L+NS          +       G 
Sbjct: 584  HP---EKKFREGMKVKARVLSTNPARHQVRLTLKKTLVNSDAPAIKSYDELAVGMQAFGT 640

Query: 769  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
            +  +++ G  V+F G+L GF P S+  +    D  + + VGQ+V   +L  + E  R+ +
Sbjct: 641  IVAVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPEVARLIV 700

Query: 829  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
            S K               F LE+++A+              +   +G V+  KV +  + 
Sbjct: 701  SCKDPSA-----------FGLEKQLAL--------------KKLQVGDVVSAKVTQKTED 735

Query: 889  GVVVSFEEHSDVYGFITHHQLAGATVE-----------SGSVIQAAILDVAKAERLVDLS 937
             V V   + S +   +    L   +V            + ++ +  +L+  +  R + LS
Sbjct: 736  DVFVELID-SSLKAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNEGRRSIILS 794

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
             K   +          QA K+ +      D  + + V   V  +  +   +       ++
Sbjct: 795  HKPSLV----------QAGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTAL 844

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
               S+   +    P       QS++  + ++      GRL++ + + ++ E+   ++   
Sbjct: 845  LPKSLMPQDWHDKPNFGLHKYQSLLVKITSI--DKELGRLVVAIPSAADQESKKPEKPAD 902

Query: 1058 KS------------SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE 1105
            ++               +G L +A +  +K  +L ++      GRI ++++ D   ++ +
Sbjct: 903  QAVNPLDETVTTMADLTIGKLTKARVRAVKETQLNVEIADNIQGRIDVSQIFDKWEDIPD 962

Query: 1106 --NLFSNFKIGQTVTARII----AKSNK--PDMKKS--FLWELSIKPSMLTVSEIGSKLL 1155
                   FK    +  R++    A++++  P   +S   + ELS KPS +    +   L 
Sbjct: 963  PRRPLKRFKPKDIIDVRVLGIHDARNHRFLPITHRSSHAVLELSAKPSDVQAPSLPEPLS 1022

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E+ +V  G     +V  V + +  + +S +++ ++  ++++ + S+L   +R F IG A
Sbjct: 1023 LEKIEV--GSTHLAFVNNVASNYLWVNLSPNVRGRISAMEASNDLSKLANLERSFPIGCA 1080

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   VLS++KEK  + L         S +T   S++     I +G ++  +++KI     
Sbjct: 1081 LKVRVLSVDKEKSRVDL---------SARTPGASHELTWDMIEQGMVLPAKVTKI--NDR 1129

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
             ++V++   + G VH  +L +         YDE   +PLS + + + V+  V+E+ ++ +
Sbjct: 1130 QVIVKLSESVAGPVHLPDLAD--------DYDEA--NPLS-HSKFEIVRVAVVEVDKSNK 1178

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                + LS+R S           L++ +    + + K   L    I++G+VKNV+ KG F
Sbjct: 1179 ---KLRLSMRPS---------RVLNSSLPIKDREITKNTKLQVGDIIRGFVKNVSDKGLF 1226

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            + L   + A V + NLSD Y++  ++ F + +LV GR++S+     R+E++LK S     
Sbjct: 1227 VNLGGDVVALVKIKNLSDSYLKDWKEHFQVDQLVKGRIISLA--DGRIEMSLKQSVVEKD 1284

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
                I  +S+L  G  V G++++VE +G FI I+ ++
Sbjct: 1285 YVPPI-TISDLKEGQTVTGKVRKVEEFGAFIDIDGSD 1320



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 182/868 (20%), Positives = 322/868 (37%), Gaps = 183/868 (21%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 190
            ++ GM+ +G +  V +   ++   G LRG    ++  +  + +  E          F VG
Sbjct: 631  LAVGMQAFGTIVAVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEH---------FRVG 681

Query: 191  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSL-LYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
            Q VS  VL  D    E+ +  +      +  L K L+L+ +Q G V++A V    +    
Sbjct: 682  QTVSIYVLSFD---PEVARLIVSCKDPSAFGLEKQLALKKLQVGDVVSAKVTQKTEDDVF 738

Query: 250  LHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSDPD 301
            +     S    LP  +L + S    +  L        L + VV   +  R+ + LS  P 
Sbjct: 739  VELIDSSLKAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNEGRRSIILSHKPS 798

Query: 302  TVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
             V     K+ K IS +D    G  V   V++I  +   + F +  T       L  +   
Sbjct: 799  LVQ--AGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTAL-----LPKSLMP 851

Query: 361  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
             +W      H K N             GL     LL                  K+  +D
Sbjct: 852  QDW------HDKPN------------FGLHKYQSLL-----------------VKITSID 876

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
            + LG L+            V I   A++E +K EK   +                     
Sbjct: 877  KELGRLV------------VAIPSAADQESKKPEKPADQA-------------------- 904

Query: 481  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIV-- 537
               +  +  V T +D+  G + K +V AV      V+    ++    +  +  ++E +  
Sbjct: 905  --VNPLDETVTTMADLTIGKLTKARVRAVKETQLNVEIADNIQGRIDVSQIFDKWEDIPD 962

Query: 538  --KPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATD----RL 587
              +P K+FK    +  RVLG+   R    + +TH+     S  A+L   A+ +D     L
Sbjct: 963  PRRPLKRFKPKDIIDVRVLGIHDARNHRFLPITHR-----SSHAVLELSAKPSDVQAPSL 1017

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---------------YHV 632
                 + KIE     + F N V        L  +     S+M               + +
Sbjct: 1018 PEPLSLEKIEVGSTHLAFVNNVASNYLWVNLSPNVRGRISAMEASNDLSKLANLERSFPI 1077

Query: 633  GQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVI 690
            G  +K R++S      R++LS    P    E   D+++ G ++   V  +    V+V + 
Sbjct: 1078 GCALKVRVLSVDKEKSRVDLS-ARTPGASHELTWDMIEQGMVLPAKVTKINDRQVIVKLS 1136

Query: 691  AKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LIN 747
                  G +    LAD  + A  +       +E  ++ V++ + SN  L LS + S ++N
Sbjct: 1137 ES--VAGPVHLPDLADDYDEANPLS---HSKFEIVRVAVVEVDKSNKKLRLSMRPSRVLN 1191

Query: 748  SAQQLPSDASHIHPNS------VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            S+  LP     I  N+      ++ G+V N+ + G FV   G +          D    D
Sbjct: 1192 SS--LPIKDREITKNTKLQVGDIIRGFVKNVSDKGLFVNLGGDVVALVKIKNLSDSYLKD 1249

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
              + + V Q V+  I+ +    GRI +SLKQS         +++ ++    I+ L+    
Sbjct: 1250 WKEHFQVDQLVKGRIISLAD--GRIEMSLKQSV--------VEKDYVPPITISDLKE--- 1296

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------ 915
                         G  + GKV +  +FG  +  +    + G     ++A   V+      
Sbjct: 1297 -------------GQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLY 1343

Query: 916  -SGSVIQAAILDVAKAERLVDLSLKTVF 942
              G  ++A +L V    + ++L LK  +
Sbjct: 1344 NEGDRVKARVLKVDVENKRINLGLKPSY 1371



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 194/916 (21%), Positives = 342/916 (37%), Gaps = 169/916 (18%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G  V+   G+ G  P   +       P   +  G  VK R++S+ PA  ++ L+  +K T
Sbjct: 559  GLIVKIAEGISGLVPEMHVSDVHLQHPEKKFREGMKVKARVLSTNPARHQVRLT--LKKT 616

Query: 660  RVSED-------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-----DH 707
             V+ D       D + +G    G +  V  +  +V     G  +G +P   ++     D 
Sbjct: 617  LVNSDAPAIKSYDELAVGMQAFGTIVAVLQHGAIVQFY--GQLRGFLPVSEMSEAYIHDP 674

Query: 708  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVH 766
             EH  V ++V         +L  D E + L++S K  S     +QL      +    VV 
Sbjct: 675  KEHFRVGQTVSI------YVLSFDPEVARLIVSCKDPSAFGLEKQLA--LKKLQVGDVVS 726

Query: 767  GYVCNIIETGCFVRFL-GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              V    E   FV  +   L    P      K+V+  +A L K  +V Q++ + ++ +  
Sbjct: 727  AKVTQKTEDDVFVELIDSSLKAILPVGHLTDKSVNKTQAAL-KRIHVNQTL-TELVVLEK 784

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
              GR ++                   +L  K +++Q+ K         EG +I +V + +
Sbjct: 785  NEGRRSI-------------------ILSHKPSLVQAGK---------EGKLISTVDDAR 816

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD------ 935
            + E               V GF+ +   + A V+ GS + A +      +   D      
Sbjct: 817  LGEQ--------------VPGFVRNITASAAFVQFGSKLTALLPKSLMPQDWHDKPNFGL 862

Query: 936  -----LSLKTVFIDR-----FREANSNRQAQKKKRKREASK-------------DLGVHQ 972
                 L +K   ID+          S    + KK ++ A +             DL + +
Sbjct: 863  HKYQSLLVKITSIDKELGRLVVAIPSAADQESKKPEKPADQAVNPLDETVTTMADLTIGK 922

Query: 973  TVNAIVEIVKENYLVLSLPE-----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 1027
               A V  VKE  L + + +      + S  +    D    + P K+F     +   V+ 
Sbjct: 923  LTKARVRAVKETQLNVEIADNIQGRIDVSQIFDKWEDIPDPRRPLKRFKPKDIIDVRVLG 982

Query: 1028 ---------LPSSSTAGRLLLLLKA-ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 1077
                     LP +  +   +L L A  S+ +  S          +VGS   A +  +   
Sbjct: 983  IHDARNHRFLPITHRSSHAVLELSAKPSDVQAPSLPEPLSLEKIEVGSTHLAFVNNVASN 1042

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1137
             L +       GRI   E ++D S +  NL  +F IG  +  R+++     D +KS +  
Sbjct: 1043 YLWVNLSPNVRGRISAMEASNDLSKLA-NLERSFPIGCALKVRVLSV----DKEKSRV-- 1095

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
                   L+    G+        +  G  +   V K+++   ++ +S  +   + + D A
Sbjct: 1096 ------DLSARTPGASHELTWDMIEQGMVLPAKVTKINDRQVIVKLSESVAGPVHLPDLA 1149

Query: 1198 YEPSELQEFQR-RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
             +  E       +F I +     V+ ++K  K LRL +RP +   S   +        T 
Sbjct: 1150 DDYDEANPLSHSKFEIVRVA---VVEVDKSNKKLRLSMRPSRVLNSSLPIKDREITKNTK 1206

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  GDI+ G +  +     GL V +G  +   V   ++KN+  S      +  Q D    
Sbjct: 1207 LQVGDIIRGFVKNVSDK--GLFVNLGGDV---VALVKIKNLSDSYLKDWKEHFQVD---- 1257

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
                Q VK +++ ++        +E+SL+ S+          +  D   P      I DL
Sbjct: 1258 ----QLVKGRIISLADG-----RIEMSLKQSV----------VEKDYVPP----ITISDL 1294

Query: 1377 SPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
                 V G V+ V   G FI +  S +L      S ++D  V+     +  G  V  RVL
Sbjct: 1295 KEGQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLYNEGDRVKARVL 1354

Query: 1435 SVEPLSKRVEVTLKTS 1450
             V+  +KR+ + LK S
Sbjct: 1355 KVDVENKRINLGLKPS 1370



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 169/377 (44%), Gaps = 46/377 (12%)

Query: 221  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL----PRNNLAENSGID--V 274
            L + LSLE ++ G    A+V ++  +   ++   P+  G +      N+L++ + ++   
Sbjct: 1017 LPEPLSLEKIEVGSTHLAFVNNVASNYLWVNLS-PNVRGRISAMEASNDLSKLANLERSF 1075

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
              G  L+  V S+D+ +  V LS+     S  +T        D++  GM++  +V  I +
Sbjct: 1076 PIGCALKVRVLSVDKEKSRVDLSARTPGASHELT-------WDMIEQGMVLPAKVTKIND 1128

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
              V++       G V +  L + +   N    +++ + V   ++ VD +++ + L++ P 
Sbjct: 1129 RQVIVKLSESVAGPVHLPDLADDYDEAN-PLSHSKFEIVRVAVVEVDKSNKKLRLSMRPS 1187

Query: 395  LLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
             + N + P         + ++VGDI      V+     GL +++    V   A V I ++
Sbjct: 1188 RVLNSSLPIKDREITKNTKLQVGDII--RGFVKNVSDKGLFVNLGGDVV---ALVKIKNL 1242

Query: 446  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKP 498
            ++  ++  ++ ++    V+ RI+       LA G ++ S  + +V        T SD+K 
Sbjct: 1243 SDSYLKDWKEHFQVDQLVKGRIIS------LADGRIEMSLKQSVVEKDYVPPITISDLKE 1296

Query: 499  GMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL-- 554
            G  V GKV  V+ FGA +   G   +  LC    M++  +      +  G  +  RVL  
Sbjct: 1297 GQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLYNEGDRVKARVLKV 1356

Query: 555  GVKSKRITVTHKKTLVK 571
             V++KRI +  K +  K
Sbjct: 1357 DVENKRINLGLKPSYFK 1373


>gi|378726693|gb|EHY53152.1| 30S ribosomal protein S1 [Exophiala dermatitidis NIH/UT8656]
          Length = 1811

 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 252/1000 (25%), Positives = 431/1000 (43%), Gaps = 139/1000 (13%)

Query: 3   ASSRKSQKKSSKDG-PKFNKASKNQFKNSKKQIND-AVEAQDLALPPDDDVPVFPRGGGH 60
           AS++ + K+S  D  PK   AS +  ++ K + N  +V A++         P FPRGG  
Sbjct: 13  ASTKPATKRSKSDSKPKAEAASTSSAQDKKAKPNSVSVLAKEQ--------PAFPRGGAG 64

Query: 61  SLTQRERDEIH--AEVDAE---------FEAVERGLH-------------------KKNK 90
            LT  ER +I   A  DAE         F+   + LH                   K+ +
Sbjct: 65  VLTPLERKQIQKKATRDAEREQKQGRDLFDEGSKSLHDTSDEEAPSDVDTEVKKPTKRQR 124

Query: 91  KKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLV 150
           KKK +++  A+ T  ++       I G        ++ K ++ G  + G +  V+ + L 
Sbjct: 125 KKKARSKDAADTTEPEVR------IEG--------LSYKRLTTGSLILGQITAVSSRTLT 170

Query: 151 ICLPGGLRGL-------ARAADALDPILDNEIEANEDNL-----------LPTIFHVGQL 192
           + LP  L G        A+ ++ +  +L NE +  ED+            L   FHVGQ 
Sbjct: 171 VALPNNLVGYVPLTSISAQLSEKIQALL-NEKDEEEDSNDSGDEDDDDIALTNYFHVGQY 229

Query: 193 VSCIVLQLDDDK---KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
           +   V   + D    K   KR+I LS++ SL   G+    +  G  +   V SIEDHG +
Sbjct: 230 LRVAVTSTEQDNTAGKAPTKRRIELSVQPSLTNVGIGRANLALGATVQVAVSSIEDHGLV 289

Query: 250 LHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
               L   +  GF+P++ L  +  +  +K G +    V  +  + +VV LS+DP      
Sbjct: 290 ADLALEDQNVRGFIPKSQLPASLPLSSIKTGSVFLCSVIELGSSGRVVKLSADPSKWIPL 349

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
            T      S+D  +PG      V++  E G+    +     T D+ H  +      +   
Sbjct: 350 AT----APSVDTFLPGTKAEILVENKTEVGLSGKSMGLVDATADLVHSGSFRDKEAFLAK 405

Query: 367 YNQHKKVNARILFVDPTS--RAVG-------LTLNPYLLHNRAPPSHVKVGDIYDQSKVV 417
           Y   KK++ R++   P S  + +G       L + P    +  P     +  I D + V+
Sbjct: 406 YEAGKKIHGRLICTFPLSETKKLGFSVLQHVLDMEPTANMDGRPEGTPALSSIVDAAPVI 465

Query: 418 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
           RV+ GLG+ L +    V       +SD   E + +    +K GS  + RI+ +  ++ L 
Sbjct: 466 RVEPGLGIYLQLSPNTVGFAHVSRLSDDKVEMLSETSGPFKLGSEHKARIIEYNPVDDLY 525

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMS 532
              L+    E     + DV  G +VK  +    +  D   G +V    G+  L P  H+S
Sbjct: 526 LVSLQKKVLEQSFLRYEDVPLGAIVKATIEKLLVGPDGVRGLVVNLAEGISGLVPQIHLS 585

Query: 533 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           + E+  P +KF+ G  +  RV+    + KRI +T KKTLV S       Y +      T 
Sbjct: 586 DVELKHPERKFREGQTVTARVITTDPQKKRIRLTLKKTLVNSDQKPWLRYEDIESGDSTL 645

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G +TK++  G  VRFY  V+GF P SE+      + +  + VGQVV    +S  PA RR+
Sbjct: 646 GTLTKVDPLGAVVRFYGPVRGFLPVSEMSEAYIKDATEHFRVGQVVTVTAISVNPAERRL 705

Query: 651 NLSFM----MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA- 705
            +S        P+  S    ++ G++V G V   + + +++ +       G+     L  
Sbjct: 706 TVSCRDINKSNPSIESSLSSLEPGTIVKGTVFEKSQDDILLRL------DGSDAIARLTK 759

Query: 706 DHLEHATVMK-----SVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQ--LPSDA 756
           DH+   +  K     + I+ G + + ++VL    +   +++S K SLI +AQ+  L    
Sbjct: 760 DHVSDGSSKKRESAFNKIRVGQKLEDVVVLQVLPKRRLVMVSNKQSLIKAAQEGTLLKSY 819

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK----AVDGQRADLSKTYYVGQSV 812
             + PN++V G+V NI   G FV F G ++G   +++    A D +   ++K   V   V
Sbjct: 820 EQLQPNALVTGFVSNITSDGVFVSFAGGISGLITKAQVPVEATDERDFGMTKFQPVTAKV 879

Query: 813 RSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            S  +D    T R  L+++++  ++     A+ +Q+   L   +          +ELK +
Sbjct: 880 LS--IDYKGATPRFWLTMRENPANTRPEPAAAAVQDVPALVNPV---------DTELKTI 928

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL 909
               +G V + ++    D    ++ E   DV G I   ++
Sbjct: 929 NDLSVGRVTKARIISVKD--TQINVELAKDVQGRIDASEI 966



 Score =  154 bits (389), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 208/949 (21%), Positives = 408/949 (42%), Gaps = 135/949 (14%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            G +++      GFA  S L  D      E S  + +G   K RI+   P      +S   
Sbjct: 472  GIYLQLSPNTVGFAHVSRLSDDKVEMLSETSGPFKLGSEHKARIIEYNPVDDLYLVSLQK 531

Query: 657  KPTRVS----EDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-H 707
            K    S    ED  V LG++V   ++  +V P+ V  +V  +A+G S G +P  HL+D  
Sbjct: 532  KVLEQSFLRYED--VPLGAIVKATIEKLLVGPDGVRGLVVNLAEGIS-GLVPQIHLSDVE 588

Query: 708  LEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
            L+H         P  +F +       ++  D +   + L+ K +L+NS Q+       I 
Sbjct: 589  LKH---------PERKFREGQTVTARVITTDPQKKRIRLTLKKTLVNSDQKPWLRYEDIE 639

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
                  G +  +   G  VRF G + GF P S+  +    D ++ + VGQ V    + VN
Sbjct: 640  SGDSTLGTLTKVDPLGAVVRFYGPVRGFLPVSEMSEAYIKDATEHFRVGQVVTVTAISVN 699

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
                R+T+S     C   +                    K N S    +     G++++G
Sbjct: 700  PAERRLTVS-----CRDIN--------------------KSNPSIESSLSSLEPGTIVKG 734

Query: 881  KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             V E +   +++  +    +      H   G++ +     ++A   +   ++L D+ +  
Sbjct: 735  TVFEKSQDDILLRLDGSDAIARLTKDHVSDGSSKKR----ESAFNKIRVGQKLEDVVVLQ 790

Query: 941  VFIDRFREANSNRQAQKKKRKR----EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
            V   R     SN+Q+  K  +     ++ + L  +  V   V  +  + + +S       
Sbjct: 791  VLPKRRLVMVSNKQSLIKAAQEGTLLKSYEQLQPNALVTGFVSNITSDGVFVSFAGGISG 850

Query: 997  I---GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK---AISETETS 1050
            +       V   + + F   +F   Q V A V+++       R  L ++   A +  E +
Sbjct: 851  LITKAQVPVEATDERDFGMTKF---QPVTAKVLSIDYKGATPRFWLTMRENPANTRPEPA 907

Query: 1051 SSK-------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 1097
            ++                K  +   VG + +A I  +K  ++ ++      GRI  +E+ 
Sbjct: 908  AAAVQDVPALVNPVDTELKTINDLSVGRVTKARIISVKDTQINVELAKDVQGRIDASEIF 967

Query: 1098 DDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLT 1146
            D+  ++ +       F   Q +T +I+   +  + +         K+ ++ELS KPS  T
Sbjct: 968  DEWKDIKDRKRPLKQFSPKQELTVKILGAHDTRNHRFLPLTHRNGKNTVFELSCKPS--T 1025

Query: 1147 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
            V+   + +L +  D+S+G     +V  +      + IS  ++ ++   D + + S     
Sbjct: 1026 VAAPNNSIL-KLTDLSVGSSWLAFVNNISENGLWVNISPSVRGRIRATDVSDDLSLAANL 1084

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            ++ F IG A+  HVL+++ EK  L L  R   DG++  ++ I +      + +G ++ GR
Sbjct: 1085 EKAFPIGSALKVHVLAVDPEKNRLDLTAR--SDGLA-SSLTIKD------VSKGLVLPGR 1135

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1326
            ++++      ++VQ+     G V   ++ +          D  + +P + + +   ++  
Sbjct: 1136 VTRVTDR--NILVQLSDQAVGAVDLIDMAD----------DYNEANP-AKFQKNDILRVC 1182

Query: 1327 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1386
            VL++    +    ++LS R S           LS+ +      +  I  LS N +V+G++
Sbjct: 1183 VLKVDVPNK---KIQLSTRPS---------KVLSSSMKVTDPEITSISQLSVNDVVRGFI 1230

Query: 1387 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
             NV+ KG F+ L   + A V +++LSD +++  +  F   +LV G+++ ++  S  V+++
Sbjct: 1231 SNVSDKGVFVTLGHGVTAFVRVTHLSDSFLKEWKDHFQRDQLVKGKIIMIDQASGHVQMS 1290

Query: 1447 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVR 1495
            LK S      ++ +   ++LHVGDIV G++ +VE +G+FI ++N+  VR
Sbjct: 1291 LKESALDPNYKAPL-TFNDLHVGDIVTGKVVKVEPFGVFIAVDNSENVR 1338



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 164/371 (44%), Gaps = 27/371 (7%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + L ++S G      V  ++E  L + +   +RG  RA D  D   D  + AN    L  
Sbjct: 1034 LKLTDLSVGSSWLAFVNNISENGLWVNISPSVRGRIRATDVSD---DLSLAAN----LEK 1086

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
             F +G  +   VL +D +K  +      L+ R   L   L+++ V +G+VL   V  + D
Sbjct: 1087 AFPIGSALKVHVLAVDPEKNRLD-----LTARSDGLASSLTIKDVSKGLVLPGRVTRVTD 1141

Query: 246  HGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
               ++        G +   ++A    E +    +   +L+  V  +D   K + LS+ P 
Sbjct: 1142 RNILVQLS-DQAVGAVDLIDMADDYNEANPAKFQKNDILRVCVLKVDVPNKKIQLSTRPS 1200

Query: 302  TV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
             V  S     D +  SI  L    +V   + ++ + GV ++     T  V + HL ++F 
Sbjct: 1201 KVLSSSMKVTDPEITSISQLSVNDVVRGFISNVSDKGVFVTLGHGVTAFVRVTHLSDSF- 1259

Query: 360  TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSK 415
               WK+ + + + V  +I+ +D  S  V ++L    L  + +AP +   + VGDI    K
Sbjct: 1260 LKEWKDHFQRDQLVKGKIIMIDQASGHVQMSLKESALDPNYKAPLTFNDLHVGDIV-TGK 1318

Query: 416  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
            VV+V+   G+ + + ++  +       S++AE+ V    K +KEG  V+ ++L     + 
Sbjct: 1319 VVKVE-PFGVFIAVDNSE-NVRGLCHRSEIAEKRVEDATKLFKEGDAVKAKVLKLDPAQR 1376

Query: 476  LATGILKASAF 486
                 +KAS F
Sbjct: 1377 KVNFGMKASYF 1387



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/496 (20%), Positives = 205/496 (41%), Gaps = 76/496 (15%)

Query: 492  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVG 546
            T +D+  G V K ++I+V      V+    V+       +  E++ +K    P K+F   
Sbjct: 927  TINDLSVGRVTKARIISVKDTQINVELAKDVQGRIDASEIFDEWKDIKDRKRPLKQFSPK 986

Query: 547  AELVFRVLGVKSKR----ITVTH---KKTLVK------SKLAILSSYAEATDRLITHGW- 592
             EL  ++LG    R    + +TH   K T+ +      +  A  +S  + TD  +   W 
Sbjct: 987  QELTVKILGAHDTRNHRFLPLTHRNGKNTVFELSCKPSTVAAPNNSILKLTDLSVGSSWL 1046

Query: 593  --ITKIEKHGCFVRFYNGVQGFAPRSELG--LDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
              +  I ++G +V     V+G    +++   L         + +G  +K  +++  P   
Sbjct: 1047 AFVNNISENGLWVNISPSVRGRIRATDVSDDLSLAANLEKAFPIGSALKVHVLAVDPEKN 1106

Query: 649  RINLSFMMK--PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            R++L+       + ++  D+ K G ++ G V  VT   ++V +  +    G +    +AD
Sbjct: 1107 RLDLTARSDGLASSLTIKDVSK-GLVLPGRVTRVTDRNILVQLSDQAV--GAVDLIDMAD 1163

Query: 707  HLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDA----- 756
                A   K      ++ + +L      +D  +  + LS + S + S+    +D      
Sbjct: 1164 DYNEANPAK------FQKNDILRVCVLKVDVPNKKIQLSTRPSKVLSSSMKVTDPEITSI 1217

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            S +  N VV G++ N+ + G FV     +T F   +   D    +    +   Q V+  I
Sbjct: 1218 SQLSVNDVVRGFISNVSDKGVFVTLGHGVTAFVRVTHLSDSFLKEWKDHFQRDQLVKGKI 1277

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            + ++  +G + +SLK+S     D ++         K  +  +  H            +G 
Sbjct: 1278 IMIDQASGHVQMSLKESAL---DPNY---------KAPLTFNDLH------------VGD 1313

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAK 929
            ++ GKV +   FGV ++ +   +V G     ++A   VE        G  ++A +L +  
Sbjct: 1314 IVTGKVVKVEPFGVFIAVDNSENVRGLCHRSEIAEKRVEDATKLFKEGDAVKAKVLKLDP 1373

Query: 930  AERLVDLSLK-TVFID 944
            A+R V+  +K + FID
Sbjct: 1374 AQRKVNFGMKASYFID 1389



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 102/468 (21%), Positives = 196/468 (41%), Gaps = 81/468 (17%)

Query: 874  IGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAGA----TVESGSVIQAAILDVA 928
            +G+ ++  V    D G+V     E  +V GFI   QL  +    ++++GSV   +++++ 
Sbjct: 272  LGATVQVAVSSIEDHGLVADLALEDQNVRGFIPKSQLPASLPLSSIKTGSVFLCSVIELG 331

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 988
             + R+V LS           A+ ++              L    +V+  +   K   LV 
Sbjct: 332  SSGRVVKLS-----------ADPSKWIP-----------LATAPSVDTFLPGTKAEILVE 369

Query: 989  SLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIAT-----------VMALPSSSTAGRL 1037
            +  E   S     + D          F + ++ +A            +   P S T    
Sbjct: 370  NKTEVGLSGKSMGLVDATADLVHSGSFRDKEAFLAKYEAGKKIHGRLICTFPLSETKKLG 429

Query: 1038 LLLLKAISETETSSSKRAKKKSSYDVGSLVQAE-ITEIKP-LELRLKFGIGFHGRIHITE 1095
              +L+ + + E +++   + + +  + S+V A  +  ++P L + L+      G  H++ 
Sbjct: 430  FSVLQHVLDMEPTANMDGRPEGTPALSSIVDAAPVIRVEPGLGIYLQLSPNTVGFAHVSR 489

Query: 1096 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1155
            ++DDK  ++      FK+G    ARII  +   D     L+ +S++  +L      S L 
Sbjct: 490  LSDDKVEMLSETSGPFKLGSEHKARIIEYNPVDD-----LYLVSLQKKVLE----QSFLR 540

Query: 1156 FEECDVSIGQRVTGYVYKV----DNEWALLT-----ISRHLKAQLFILDSAYEPSELQEF 1206
            +E  DV +G  V   + K+    D    L+      IS  L  Q+ + D      EL+  
Sbjct: 541  YE--DVPLGAIVKATIEKLLVGPDGVRGLVVNLAEGIS-GLVPQIHLSDV-----ELKHP 592

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE----GDI 1262
            +R+F  G+ VT  V++ + +KK +RL L+        KT+ +++D      +E    GD 
Sbjct: 593  ERKFREGQTVTARVITTDPQKKRIRLTLK--------KTL-VNSDQKPWLRYEDIESGDS 643

Query: 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
              G ++K+   +G +V   GP + G +  +E+    + D    +  GQ
Sbjct: 644  TLGTLTKV-DPLGAVVRFYGP-VRGFLPVSEMSEAYIKDATEHFRVGQ 689


>gi|409083836|gb|EKM84193.1| hypothetical protein AGABI1DRAFT_117625 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1480

 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 267/1055 (25%), Positives = 449/1055 (42%), Gaps = 130/1055 (12%)

Query: 1   MAASSRK-SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGG 59
           MAA  R  ++  SS+   K     K++ K  + + + A+  ++ A         FPRGGG
Sbjct: 1   MAAQKRPLNETTSSRKSKKLKTDEKSKPKEKEVEKSTALTLEEAA---------FPRGGG 51

Query: 60  HSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKK--KKTERKANETVDDLGSLFGDGISG 117
            S T  E   I AE   E    +  L K+++++K  KK  RK  +      S  GD    
Sbjct: 52  TSFTPFEVKTIRAEAVKE---ADEALFKESREEKGSKKNARKIKKQNISNVSEKGD---- 104

Query: 118 KLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL--- 171
             P     +  K    GMK+ G V  +    L+I LP  L G   + + +     +L   
Sbjct: 105 --PVRIEHLNYKRAFVGMKILGQVVSIIPLGLIISLPNQLYGHVPITQISSQFTTVLERF 162

Query: 172 DNEIEANEDNL-------------LPTIFHVGQLVSCIVLQLD----DDKKEIGK----- 209
           DN  E +++++             L  +FHVGQ V  IV  +      D   +GK     
Sbjct: 163 DNRDEGSDEDIAMEDEDEDTQTPDLYGMFHVGQYVRAIVTNVHAAGVSDIMGVGKLRDDL 222

Query: 210 ----RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNN 265
               R++ LSL    +  G+    ++ G  ++A VKS+EDHGY L  G+   +GFL   +
Sbjct: 223 AKASRRMELSLVPEKVNAGVQKTDLKSGFTISAAVKSLEDHGYNLDLGVQDVSGFLSFED 282

Query: 266 LAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS----IDLLVP 321
           +  +S   +  G ++   V  I    +V  ++ D          D+  +S    ++ ++P
Sbjct: 283 VGRDSP-KLHVGHVINVSVSKISANNRVCNVTMDFSLSFSSNHTDIFQLSEISSVNSVLP 341

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-- 379
           G +V   + SI   G+ L  L +F GTVD FHL    P       +    KV ARIL+  
Sbjct: 342 GTLVQCLITSINPEGINLQVLGFFDGTVDQFHLPKNPPKP-----FKVGTKVKARILYNY 396

Query: 380 -VDPTSRAVGLT-----LNPYLLHNRAPPSHVK----VGDIYDQSKVVRVDRGLGLLLDI 429
              P   ++ L+     L PY++      S ++    VG + D  KV RV++  GL++ +
Sbjct: 397 SASPPKFSLALSEHVIRLRPYMVSIGEDSSLLEEAYPVGTVLDAVKVSRVEKERGLIVGL 456

Query: 430 PSTPVSTPAYVTISDVAEEEVRKLEK--KYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
                    +V IS ++++ V  L     +K G+  R R+ G    +GL    LK S  E
Sbjct: 457 DG---QLEGFVHISHLSDDHVPSLTSIGPWKPGTIHRARVTGHFTFDGLLQLSLKRSVLE 513

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
                 +DV  G  V G +  +      V     +  +    H ++  +  P K+FKVG 
Sbjct: 514 QKYIQVTDVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGT 573

Query: 548 ELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            +  RVL V ++  RI++T KKTL+ S+L ILS+  +     + H  + K+      V F
Sbjct: 574 SIKCRVLVVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPEDLAHAVVFKVHDKHLLVEF 633

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED- 664
           YN ++   P  E+   P    S  + VG+VVK RI+S     RRI  S        S   
Sbjct: 634 YNNLKAVIPLKEVSETPVNSLSEAFSVGKVVKVRIISVQQNQRRIVASIRRATASGSATP 693

Query: 665 DL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKPG 721
           D+  V++G++V GVV  +  +  +++ +     K     ++LA+H       +KS +K G
Sbjct: 694 DISKVEVGNIVEGVVAEIHKDNAILF-LQPSNVKALHSLKNLANHRAIGLPQLKSELKVG 752

Query: 722 YEFDQLLVLDNESSN---LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
               +L+V+         ++ +A  S +    ++      IH   +V G V      G  
Sbjct: 753 ERLYELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDTIHIGQIVSGRVIRHTRLGAL 812

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V+    + G    +   D     LS    V   V++ I+ V+ E  R+TLS +QS     
Sbjct: 813 VKVTSHIGGIIHPTDVSDNFDNGLSYP-AVDSLVKAAIVKVDEEKRRVTLSTRQS----- 866

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
                        ++   Q+++    E+  +   I+G+ + G V    D G+ V+   + 
Sbjct: 867 -------------RLRPDQTTQVVDKEINDISDLILGASVRGFVKSIADHGLFVTVGRYI 913

Query: 899 DVY--------GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
           D           FI   +      +   +++  IL V    + V+L+        FR  +
Sbjct: 914 DARVQIRELFDDFIKDWK---PRFQVNQLVKGRILSVDIENQKVELT--------FRSGD 962

Query: 951 SNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENY 985
            + + ++ + KR  S DL   + V+ I++ + ENY
Sbjct: 963 LSARQREAQTKRSPS-DLHEGEKVDGIIKRI-ENY 995



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 138/539 (25%), Positives = 241/539 (44%), Gaps = 65/539 (12%)

Query: 967  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
            D+GV QTV   ++ + ++ + ++L E    + + +       K P K+F  G S+   V+
Sbjct: 521  DVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVL 580

Query: 1027 ALPS-----SSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 1079
             + +     S TA + LL   L  +S  E    +            L  A + ++    L
Sbjct: 581  VVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPE-----------DLAHAVVFKVHDKHL 629

Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139
             ++F       I + EV++   N +   FS   +G+ V  RII+             +  
Sbjct: 630  LVEFYNNLKAVIPLKEVSETPVNSLSEAFS---VGKVVKVRIISVQQN---------QRR 677

Query: 1140 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA- 1197
            I  S+   +  GS    +   V +G  V G V ++  + A+L +   ++KA   + + A 
Sbjct: 678  IVASIRRATASGSATP-DISKVEVGNIVEGVVAEIHKDNAILFLQPSNVKALHSLKNLAN 736

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            +    L + +    +G+ +   V+ + N EK  + +   P         + +S D     
Sbjct: 737  HRAIGLPQLKSELKVGERLYELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDT---- 792

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            IH G IV GR+  I     G +V++  H+ G +H T+     VSD    +D G    LS 
Sbjct: 793  IHIGQIVSGRV--IRHTRLGALVKVTSHIGGIIHPTD-----VSD---NFDNG----LSY 838

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
                  VK  ++++    R         R +L    S    D +T V    K +  I DL
Sbjct: 839  PAVDSLVKAAIVKVDEEKR---------RVTLSTRQSRLRPDQTTQV--VDKEINDISDL 887

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
                 V+G+VK++   G F+ + R +DA+V +  L D +++  +  F + +LV GR+LSV
Sbjct: 888  ILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKDWKPRFQVNQLVKGRILSV 947

Query: 1437 EPLSKRVEVTLKTSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            +  +++VE+T ++ D  +R        + S+LH G+ V G IKR+E+YGLFI IE T +
Sbjct: 948  DIENQKVELTFRSGDLSARQREAQTKRSPSDLHEGEKVDGIIKRIENYGLFIQIEGTKM 1006


>gi|347837370|emb|CCD51942.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 1792

 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 214/804 (26%), Positives = 353/804 (43%), Gaps = 71/804 (8%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG   LT  E  +I  ++DA  + +      K+ K   + +  A+ T     S    
Sbjct: 65  FPRGGASVLTPLEHKQI--QIDATRDVLFEQYGAKSSKPDGEDQEGADATKVKKKSKGKG 122

Query: 114 GI-----SGKLPRYANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                    ++     KI   + K + +G  + G V+++N  D+ + LP  L G      
Sbjct: 123 KSKKAAHDSEVEEETVKIEGLSYKRLVSGSLVLGQVSQINATDIALSLPNNLTGYVPITA 182

Query: 166 ALDPILDNEIEANEDNL-------------LPTIFHVGQLVSCIVLQLDDDKKEI----G 208
             D + +                       L  IF +GQ +   V+   DD        G
Sbjct: 183 ISDKVTERVEAIAAAEEDDADDEVEVEDIDLKKIFSLGQYLRAYVVSTSDDTNTATLGKG 242

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL 266
           KR+I LSLR      G++ + +     L A V S+EDHG I++ GL      GF+   ++
Sbjct: 243 KRRIELSLRPQHANNGVTPQNLINNTTLMASVTSVEDHGLIMNIGLEDTGIRGFMGAKDI 302

Query: 267 A-ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGM 323
             E    DV+ G +   +V  +    K V L +D   +      +      ++D  +PG 
Sbjct: 303 GYEVVLADVQEGAVFLCMVTGLSSNGKTVKLCADTQKIGNVKKSNYLTDAPTVDAFLPGT 362

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 383
            V T +  +   G+    +     T D+ H   +      +  +    KV  R++   P 
Sbjct: 363 AVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELEKKFKIGAKVRGRVICTFPN 422

Query: 384 S--RAVGLTLNPY---LLHNRA--------PPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430
           S  + +G++L  +   L   +A        P   + +  I ++  + +V+ G+GL +D+ 
Sbjct: 423 SDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESGVGLFVDVG 482

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 487
              +  P +V IS V + ++  LE+    YK GS  R R+LG+  L+G+    L+ S  E
Sbjct: 483 IKGI--PGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISLEKSVLE 540

Query: 488 GLVFTHSDVKPGMVVKGKV---IAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
                  D+K G VVKGKV   I  D    G +V     +  L P  H+++ +++ P KK
Sbjct: 541 QPYLRIEDLKIGEVVKGKVEKLIVNDKGVGGLLVNLAENISGLVPETHLADIQLLHPEKK 600

Query: 543 FKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           FK G  +  RVL      ++I +T KKTLV S+   L SY + T  + + G I  I   G
Sbjct: 601 FKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQSPGTIVNILNTG 660

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------F 654
             V+FY  V+GF P SE+      +P+  + +GQVV   ++   P ++++ +S      F
Sbjct: 661 AVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAKKLTVSCKDPSVF 720

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
            +      ++  +K+G +VS +V   + + + V +   G  K  +P  HL D  E+ +  
Sbjct: 721 GLAQQNALKN--LKIGEIVSALVIEKSNDDISVEIQGLGL-KAILPVGHLTDGSENKSRS 777

Query: 715 K-SVIKPGYEFDQLLVLDN-ESSNLL-LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
               I+ G     L VLD  E   L+ L+ K +L+ +AQ   L      +     VHG+V
Sbjct: 778 SFKNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKTVHGFV 837

Query: 770 CNIIETGCFVRFLGRLTGFAPRSK 793
            NI  T  FV+F G LTG  P++K
Sbjct: 838 KNITLTAVFVQFGGGLTGLLPKNK 861



 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 247/1056 (23%), Positives = 440/1056 (41%), Gaps = 141/1056 (13%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM------SEFEIVKPGKKFKVGAELVF 551
            PG  V+  ++ V S G   +  G V     L H        E E     KKFK+GA++  
Sbjct: 360  PGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELE-----KKFKIGAKVRG 414

Query: 552  RVLGV----KSKRITVT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH 599
            RV+        +++ ++   H  +L + +     +     D L     +    I K+E  
Sbjct: 415  RVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESG 474

Query: 600  -GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL 652
             G FV     G+ GF   S +    ++   E +  Y VG V + R++  +S+     I+L
Sbjct: 475  VGLFVDVGIKGIPGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISL 534

Query: 653  --SFMMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD 706
              S + +P    ED  +K+G +V G V+  +V    V  ++  +A+  S G +P  HLAD
Sbjct: 535  EKSVLEQPYLRIED--LKIGEVVKGKVEKLIVNDKGVGGLLVNLAENIS-GLVPETHLAD 591

Query: 707  -HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
              L H    +   K G     ++L  D     + L+ K +L+NS          I     
Sbjct: 592  IQLLHP---EKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQ 648

Query: 765  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
              G + NI+ TG  V+F G + GF P S+  +    D ++ + +GQ V  ++L V+ E  
Sbjct: 649  SPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAK 708

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            ++T+S K             ++  + E ++ L   K N      ++G  + +++      
Sbjct: 709  KLTVSCKDPSVFGLAQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILP----- 763

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFI 943
                G +    E+     F          +  G V+   A+LD  + +RL+ L+ K   +
Sbjct: 764  ---VGHLTDGSENKSRSSF--------KNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALV 812

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS-------------L 990
                     + AQ K   R    D+   +TV+  V+ +    + +              +
Sbjct: 813  ---------KAAQNKTLLR-MFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNKI 862

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
            PE N  +       Y T +       +GQ      MA  +S       L   A  E    
Sbjct: 863  PEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNP 922

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLF 1108
              +  K      +G L +A ++ +K  ++ ++      GRI +++  D  S++   +   
Sbjct: 923  IDETIKSIEDITLGRLTKARVSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPL 982

Query: 1109 SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1159
              F   Q V  R++   +  + +         K+ ++ELS KPS  T S      L +  
Sbjct: 983  KTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTESAQDPVSLDK-- 1040

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
             + +G     +V  V  +   + IS +++ ++  LD + + S L++    F IG A+  H
Sbjct: 1041 -IKVGSSWLAFVNNVGVDCLWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVH 1099

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1277
            V  ++ E   L L  R  QD               TF  + +G IV G+++++      +
Sbjct: 1100 VKGVDVETNRLDLSARSSQDS-----------EALTFDKLSQGMIVPGKVTRV--NERQV 1146

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
            +VQ+   +   ++ T+L +          D  + DP S Y +   V+  V +I    +  
Sbjct: 1147 MVQLTDSISAPINLTDLCD----------DYSEADP-SKYSKNDIVRVCVTDIDVPNK-- 1193

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
              V LS R+S    SS    D           +  I  L  N IV+G+VK+V  KG F+ 
Sbjct: 1194 -RVRLSTRASRVMNSSAAVQD---------PEISSISQLKVNDIVRGFVKHVADKGLFVN 1243

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTA 1455
            L   + A V +S+LSD Y++  + EF + +LV G+V  V+ +   V+++LK S  D    
Sbjct: 1244 LGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYV 1303

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +    N   ++ V  +V G+I++VE +G+FI ++ +
Sbjct: 1304 APLTFN---DIQVNQVVTGKIRKVEDFGVFIVVDGS 1336



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 138/310 (44%), Gaps = 31/310 (10%)

Query: 543  FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            F +G+ +   V GV  ++ R+ ++ + +     L    ++ + +  +I  G +T++ +  
Sbjct: 1090 FPIGSAIRVHVKGVDVETNRLDLSARSSQDSEAL----TFDKLSQGMIVPGKVTRVNERQ 1145

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRI 650
              V+  + +      ++L  D      S Y    +V+           R+  S  ASR +
Sbjct: 1146 VMVQLTDSISAPINLTDLCDDYSEADPSKYSKNDIVRVCVTDIDVPNKRVRLSTRASRVM 1205

Query: 651  NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
            N S  ++   +S    +K+  +V G V  V    +  +V   G     +    L+D    
Sbjct: 1206 NSSAAVQDPEISSISQLKVNDIVRGFVKHVADKGL--FVNLGGNVTAYVRISDLSD---- 1259

Query: 711  ATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
             + +K   K  ++ DQL+     V+D   +++ LS K S+I+     P   + I  N VV
Sbjct: 1260 -SYIKD-WKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYVAPLTFNDIQVNQVV 1317

Query: 766  HGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
             G +  + + G F+   G   ++G   +S+  + +  D+ K Y  G +V++ +L +++E 
Sbjct: 1318 TGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSEGDAVKAIVLKMDTEK 1377

Query: 824  GRITLSLKQS 833
             RI+ S+K S
Sbjct: 1378 KRISFSMKAS 1387



 Score = 47.0 bits (110), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 136/654 (20%), Positives = 257/654 (39%), Gaps = 88/654 (13%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICLPG-GLRGLARAADALDPILDNEIEANEDN 181
            A +  LKN+  G  +  +V E +  D+ + + G GL+ +       D   +N+  ++  N
Sbjct: 723  AQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILPVGHLTDGS-ENKSRSSFKN 781

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS------LETVQEGMV 235
            +      VGQ++S + +    DK E  KR I L+ + +L+    +       + V+E   
Sbjct: 782  I-----RVGQVLSDLAVL---DKLE-PKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKT 832

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTR 291
            +  +VK+I      + FG    TG LP+N + E +        K    ++  V +ID  +
Sbjct: 833  VHGFVKNITLTAVFVQFG-GGLTGLLPKNKIPEKNLRLPDFGFKKYQTIEVKVLTIDHGQ 891

Query: 292  KVVYLSSDPDTVSKCVTKDLKG--------------ISIDLLVPGMMVSTRVQSILENGV 337
            +   LS    T  K   + L                 SI+ +  G +   RV S+ +  V
Sbjct: 892  RRFLLSMADATSDKKSNEPLAPGANQEAVNPIDETIKSIEDITLGRLTKARVSSVKDTQV 951

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVD--------PTSR 385
             +       G +D+    +++     K      ++  + V+ R+L +         P S 
Sbjct: 952  NVQLADNIQGRIDVSQAFDSWSDIKSKKQPLKTFSPKQIVDVRVLGIHDARNHRFLPISH 1011

Query: 386  AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS-- 443
              G TL   +    A PS  +     D   + ++  G   L  + +  V    +V IS  
Sbjct: 1012 RSGKTL---VFELSAKPSD-QTESAQDPVSLDKIKVGSSWLAFVNNVGVDC-LWVNISPN 1066

Query: 444  --------DVAEEE--VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
                    DV+++   ++ L   +  GS +RV + G   +E     +   S+ +    T 
Sbjct: 1067 VRGRISALDVSDDVSLLKDLAANFPIGSAIRVHVKGV-DVETNRLDLSARSSQDSEALTF 1125

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKKFKVGAELVFR 552
              +  GM+V GKV  V+    +VQ    + A   L  +  ++    P K  K     + R
Sbjct: 1126 DKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEADPSKYSK---NDIVR 1182

Query: 553  V----LGVKSKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFV 603
            V    + V +KR+ ++ + + V +  A      +SS ++     I  G++  +   G FV
Sbjct: 1183 VCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHVADKGLFV 1242

Query: 604  RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
                 V  +   S+L      +  S + V Q+VK ++         + LS  +KP+ + +
Sbjct: 1243 NLGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLS--LKPSVIDK 1300

Query: 664  D-------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
            D       + +++  +V+G +  V    V + V       G      +A+   H
Sbjct: 1301 DYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVH 1354



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 22/277 (7%)

Query: 308  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + +   +  + Y
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEAD-PSKY 1175

Query: 368  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVR 418
            +++  V   +  +D  ++ V L+     + N +           S +KV DI        
Sbjct: 1176 SKNDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHV 1235

Query: 419  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
             D+GL + L    T     AYV ISD+++  ++  + +++    V+ ++     +     
Sbjct: 1236 ADKGLFVNLGGNVT-----AYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQ 1290

Query: 479  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 533
              LK S  +       T +D++   VV GK+  V+ FG  +   G   V  LC    M+E
Sbjct: 1291 LSLKPSVIDKDYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAE 1350

Query: 534  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
              +    K +  G  +   VL + +  KRI+ + K +
Sbjct: 1351 KRVHDVKKLYSEGDAVKAIVLKMDTEKKRISFSMKAS 1387


>gi|315046956|ref|XP_003172853.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
 gi|311343239|gb|EFR02442.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
          Length = 1821

 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 342/1452 (23%), Positives = 600/1452 (41%), Gaps = 182/1452 (12%)

Query: 28   KNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGL 85
            K SKK  +   +A  +++  D+  P FPRGG + LT  ER +I   A  D  FE      
Sbjct: 54   KASKKDTSAVSKAAPISMLRDEQ-PAFPRGGNNVLTPLERKQIQIQATKDVLFE------ 106

Query: 86   HKKNKKKKKKTERKANETVDDLGSLFGD--------------GISGKLPRYANK------ 125
                +K K   E   N+    LG    D              G   K      K      
Sbjct: 107  ----QKGKNGAEFANNDDEGSLGEEAEDKEGARAKPKKRKAKGTKTKEAPAVTKQGVKVE 162

Query: 126  -ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA------- 177
             +T K I+ G ++ G V+ +   D+ + LP  L G     +A+   L  ++EA       
Sbjct: 163  SLTYKRIAVGSRILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKS 221

Query: 178  ------NEDNLLPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
                  ++D  L     +GQ +   V      +DDKK   K+ I LS+       GL+  
Sbjct: 222  EDEEDEDDDFELKDYVKIGQYLRASVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKA 281

Query: 229  TVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGV 283
             +     + A V S+EDHG I+  GL      GF+    L   +G+D   VK G +   +
Sbjct: 282  DMVVNATVQASVISVEDHGLIMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCI 339

Query: 284  VRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSF 341
            V   + +  VV LS+D  +              +I+  +PG      +  +   G++   
Sbjct: 340  VTGHNASGTVVKLSADLASAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKI 399

Query: 342  LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP 401
            +      +DI H   +    +    Y+   K+  R++   P+S  V L  +      +  
Sbjct: 400  MGMLDAVIDIIHSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFS 459

Query: 402  PSHV----------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
            P+             + DI  + KV  VD  LGL + + ST      +V +S +A+  V 
Sbjct: 460  PTATLASGDDNDMPSISDIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVD 517

Query: 452  KL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-- 506
             +   E +YK GS    RI+GF  ++ L +  L+    E       DV  G VVKGK+  
Sbjct: 518  SISSDEGRYKVGSTHEGRIIGFSAMDNLFSVSLEPKIIEQPFLRLEDVTVGSVVKGKIEK 577

Query: 507  --IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--I 561
              +  +   G IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  +R  +
Sbjct: 578  LLVKPEGIEGLIVSLTDNISGLVPGMHMADTKLQHPEKKFREGLKVSVRVLSVDLQRRQL 637

Query: 562  TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
             +T KK+L+ S  A   +Y   +    + G + KI+ +G  V+FY  V+GF P SE+   
Sbjct: 638  RLTLKKSLLNSDSAPWKNYESVSAGNRSPGTLIKIQNNGAIVQFYGSVKGFLPVSEMSEA 697

Query: 622  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGV 676
               +PS  + VGQVV    ++    S R+ +S    P+  + D     + +  G +VSG 
Sbjct: 698  YIKDPSQHFTVGQVVNVHALTVDAESERLVVS-CKDPSTATADYQSAFEKIHPGLVVSGT 756

Query: 677  VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESS 735
            V   + + +++ +   G     + ++H++D      T   + I+ G + + LLV   + S
Sbjct: 757  VFEKSSDDLLIKLQDSGLI-ARLNSDHISDGSAAKRTSALNRIRVGQKMEGLLVYRVKKS 815

Query: 736  NLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            + L+  + K +L  +  +  LP+    I     V G + NII  G FV FL  LTG  P+
Sbjct: 816  HRLIQVTNKATLKEAVAEGRLPAKFEDIKHGLKVTGLIKNIIPEGIFVEFLDNLTGLIPK 875

Query: 792  SKAVDGQRADLSK-TYYVGQSVRSNILDVNSETGRITLSLK--QSCCSSTDASFMQEHFL 848
             + VD  RA      Y   Q + + +  V  ++ R  LSLK       S+D S       
Sbjct: 876  -RLVDDDRASRPDFGYSRFQVISATVCAVQEDSDRFLLSLKPVAKLKQSSDVSSAP---- 930

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHS 898
             E+K +    +     +LK +E  ++G + + K+    D    VV        +   E  
Sbjct: 931  -EKKASATALTNPVDGDLKTMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEVF 989

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQ 956
            D +  I   +    +  S  ++   +L +  A+  + + +S ++  +  +  +      Q
Sbjct: 990  DSWEDIKDRKHPLKSCHSKEILPVRVLGIHDARNHKFLPISHRSGKVPVYELSTKPSCLQ 1049

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQ 1014
              + K    + L V  T    V  + E+ L L+L P     +    +S D + +   QK 
Sbjct: 1050 ASEFKPLHLEHLKVGDTHVGYVNNIAEDCLWLNLSPNVRGRLRITDISDDISIRGNIQKN 1109

Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEI 1074
            F  G ++   V  + +     RL L  +     +T +     K      G ++   +T++
Sbjct: 1110 FPVGSAIQVVVTGVDAEKN--RLDLSARIGESAKTLTVADLSK------GMILVGRVTKV 1161

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDD--KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
               ++ ++      G + + ++ DD  K+N      +NF   + +   ++   + P+ K 
Sbjct: 1162 TDRQVLVQINDNVVGAVSLIDMADDYTKANP-----TNFHKNEALRVCVV-DVDIPNKKI 1215

Query: 1133 SFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQ 1190
            SF    S++PS +  S   +    +     + +GQ V G++ +VDN    +T+  ++ A 
Sbjct: 1216 SF----SVRPSKVLSSSLPVADPEITSINQLKVGQIVRGFIRRVDNIGIFVTLGHNVTA- 1270

Query: 1191 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----------PFQDG 1240
             +I  S    S L+E++  F + + + G +  ++K+   +++ L+          PF   
Sbjct: 1271 -YIRVSDLSDSFLKEWKDEFQVDQLIQGRLTVVDKDNNKIQMTLKKSALDPNYKPPF--A 1327

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            + D  V             G IV G++ K+      + +    +L G  H +E+    V 
Sbjct: 1328 LKDLKV-------------GQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVE 1374

Query: 1301 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL--DGMSSTNSSD 1358
            D        Q      Y++   VK KVL++    +G   + L L++S   D      S D
Sbjct: 1375 DAT------QL-----YEKDDIVKAKVLKVDLE-KG--QIALGLKASYFKDLPEEQQSED 1420

Query: 1359 LSTDVDTPGKHL 1370
             S+D ++ G  L
Sbjct: 1421 NSSDDESGGIEL 1432



 Score =  154 bits (388), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 219/934 (23%), Positives = 400/934 (42%), Gaps = 132/934 (14%)

Query: 610  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----MMKPTRVS 662
            QGF   S L    +D        Y VG   + RI+         ++S     + +P    
Sbjct: 503  QGFVHLSRLADGRVDSISSDEGRYKVGSTHEGRIIGFSAMDNLFSVSLEPKIIEQPFLRL 562

Query: 663  EDDLVKLGSLVSGVVD--VVTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSVI 718
            ED  V +GS+V G ++  +V P  +   +++      G +P  H+AD  L+H    +   
Sbjct: 563  ED--VTVGSVVKGKIEKLLVKPEGIEGLIVSLTDNISGLVPGMHMADTKLQHP---EKKF 617

Query: 719  KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            + G +   ++L +D +   L L+ K SL+NS      +   +   +   G +  I   G 
Sbjct: 618  REGLKVSVRVLSVDLQRRQLRLTLKKSLLNSDSAPWKNYESVSAGNRSPGTLIKIQNNGA 677

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
             V+F G + GF P S+  +    D S+ + VGQ V  + L V++E+ R+ +S K    ++
Sbjct: 678  IVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAESERLVVSCKDPSTAT 737

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
             D    Q  F   EKI                     G V+ G V E +   +++  ++ 
Sbjct: 738  AD---YQSAF---EKIHP-------------------GLVVSGTVFEKSSDDLLIKLQDS 772

Query: 898  SDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRFR 947
              +    + H   G+  +  S +             +  V K+ RL+ ++ K    +   
Sbjct: 773  GLIARLNSDHISDGSAAKRTSALNRIRVGQKMEGLLVYRVKKSHRLIQVTNKATLKEAVA 832

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
            E    R   K +  +   K  G+      I  I+ E   V  L      I    V D   
Sbjct: 833  EG---RLPAKFEDIKHGLKVTGL------IKNIIPEGIFVEFLDNLTGLIPKRLVDDDRA 883

Query: 1008 QKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS--SKRAKKKSSYD--- 1062
             + P   +   Q + ATV A+   S   R LL LK +++ + SS  S   +KK+S     
Sbjct: 884  SR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVAKLKQSSDVSSAPEKKASATALT 940

Query: 1063 --------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--N 1106
                          VG + +A+IT +K  +L +       GRI I+EV D   ++ +  +
Sbjct: 941  NPVDGDLKTMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEVFDSWEDIKDRKH 1000

Query: 1107 LFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFE 1157
               +    + +  R++   +  + K         K  ++ELS KPS L  SE    L  E
Sbjct: 1001 PLKSCHSKEILPVRVLGIHDARNHKFLPISHRSGKVPVYELSTKPSCLQASEF-KPLHLE 1059

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
               + +G    GYV  +  +   L +S +++ +L I D + + S     Q+ F +G A+ 
Sbjct: 1060 H--LKVGDTHVGYVNNIAEDCLWLNLSPNVRGRLRITDISDDISIRGNIQKNFPVGSAIQ 1117

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              V  ++ EK  L L  R    G S KT+ +++      + +G I+ GR++K+      +
Sbjct: 1118 VVVTGVDAEKNRLDLSARI---GESAKTLTVAD------LSKGMILVGRVTKVTDR--QV 1166

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
            +VQI  ++ G V   ++ +          D  + +P + + + + ++  V+++    +  
Sbjct: 1167 LVQINDNVVGAVSLIDMAD----------DYTKANP-TNFHKNEALRVCVVDVDIPNK-- 1213

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
              +  S+R S           LS+ +      +  I  L    IV+G+++ V + G F+ 
Sbjct: 1214 -KISFSVRPS---------KVLSSSLPVADPEITSINQLKVGQIVRGFIRRVDNIGIFVT 1263

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
            L   + A + +S+LSD +++  + EF + +L+ GR+  V+  + ++++TLK S +   + 
Sbjct: 1264 LGHNVTAYIRVSDLSDSFLKEWKDEFQVDQLIQGRLTVVDKDNNKIQMTLKKS-ALDPNY 1322

Query: 1458 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                 L +L VG IV G++++VE YG FI I+ +
Sbjct: 1323 KPPFALKDLKVGQIVTGKVRKVEEYGAFIAIDGS 1356


>gi|310789617|gb|EFQ25150.1| S1 RNA binding domain-containing protein [Glomerella graminicola
            M1.001]
          Length = 1772

 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 330/1428 (23%), Positives = 600/1428 (42%), Gaps = 166/1428 (11%)

Query: 2    AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPP--DDDVPVFPRGGG 59
            AA + K  + S +D P          K  K    DA   +  A+     D+ P+FPRGGG
Sbjct: 18   AAKASKVSRPSKRDAP---------IKEKKTATEDAPAPRPPAVSALLKDEEPLFPRGGG 68

Query: 60   HSLTQRERDEI--------HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
              LT  E+ +I          E    F+   +G  KK K++K K  +      D+     
Sbjct: 69   SVLTPLEQKKITIEAKADAAKEEAEAFDTNVKGKAKKEKRRKAKETKDLKPARDE----- 123

Query: 112  GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
             D +          +  K +  G  + G +  ++   L + LP  L G   +A  +D ++
Sbjct: 124  -DAVK------IEGLNFKRLVKGSLVLGQITHIDSVQLTVALPNNLTGHVSIASISDTIN 176

Query: 169  PILDNEIEANEDNL------------LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLS 215
              L+ +++A ++              L T+F VGQ V   VL   ++      KR+I LS
Sbjct: 177  SKLEKDVDAADEESDDDDGDDDEEIDLQTMFKVGQYVRAHVLSTAEESGSGKAKRRIELS 236

Query: 216  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAEN-SGID 273
            LR +    G++ + +     L A + S++DHGY +  G+     GFL +  +  +     
Sbjct: 237  LRPADANSGITGDDIVAYTTLMASIASVQDHGYEMDLGIDGDLKGFLAKKEVGPDMDEAS 296

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            ++PG +   VV+S+  T  VV LS+DP  +           +I+  +PG +    +  + 
Sbjct: 297  LRPGAVCLCVVKSV--TGIVVQLSTDPLKLGNTSLVASTAPTINSFLPGSLADVLLTEVT 354

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTL 391
              G+    L +   T D+ H        + +  Y    +V ARI+   P +R   +G++L
Sbjct: 355  SRGLQGKLLGHLPVTADLIHSGVGPDGVDLEAKYTVGSRVKARIICNFPAAREPKLGISL 414

Query: 392  NPYLLH-----------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
             P++++            +AP   + +    ++  V +V+  +GL +D     +S   +V
Sbjct: 415  LPHIVNLQPKSSGKGSRAKAPLDLLPIASFVEKCTVRKVEPEIGLYVDAGVPGIS--GFV 472

Query: 441  TISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             IS V + +V  L +    YK GS  R R++G+  L+G+     +    +       DV 
Sbjct: 473  HISRVKDGKVDALYETSGPYKVGSEHRGRVVGYNSLDGMFLLSFQQQVLDQPFIRLEDVP 532

Query: 498  PGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
             G VV GKV  V        G IV+   G+       H+++ ++  P KKF+ G  +  R
Sbjct: 533  VGEVVSGKVEKVIIGENGVSGLIVKLAEGISGYVHDSHLADVKLQHPEKKFREGITVKAR 592

Query: 553  VLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            VL V+ ++  + +T KKTLV S   I+ +Y E    + T G IT     G  + F+ G++
Sbjct: 593  VLSVRPRKRQLRLTLKKTLVNSDAPIVKNYDEVEVGMQTPGTITSFTAGGAQLEFFGGIR 652

Query: 611  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----D 665
            GF P S++      +P   + +GQ V   ++   P  RR+ +S    P+    D      
Sbjct: 653  GFLPVSQMSEAYIKDPREHFRIGQAVSVHVLDVNPEERRMVVS-CKDPSAFGLDKQAALK 711

Query: 666  LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEF 724
             +K+G +VS  V   T + V V +   G  K  I T HL+D     T      I  G   
Sbjct: 712  ALKVGDIVSAKVSQKTEDEVFVDLEESGL-KAIIRTGHLSDKSASKTQAAWKRINVGNTL 770

Query: 725  DQLLVLD-NESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +L+VLD NE    ++LS K S + + +  +L S+A      +V   YV  I     +V+
Sbjct: 771  SELVVLDKNERRRAVILSQKPSFVEAGKNGKLLSNAEDATVGTVAPAYVREIGPYAVYVQ 830

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G LT   P++K     +   +      QS+   I+    E  RI ++      +S D 
Sbjct: 831  FGGSLTAILPKTKLPKDAQEKEAFGMRKHQSIEVKIVSSKPEQNRIIVA-----PASADE 885

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH--- 897
                      E +A   +       +K +    +G+++  KV    D  + V   ++   
Sbjct: 886  P---------EPVAAESAVNSVDDSIKTINDVALGTILNAKVTSVKDTQLNVKVADNIQG 936

Query: 898  -------SDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVF-IDRFR 947
                    D +  IT+ +     V++  +I+   + +  +K  R +  S ++   +  F 
Sbjct: 937  RIDVSQFYDKWDDITNRKNPLQKVKANEIIRVRAIGIHDSKNYRFLPFSHRSSHSLIEFT 996

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DY 1005
               S+ +A++ +       ++G      A V    +N L ++L P     I    VS D 
Sbjct: 997  AKKSDLEAKEVELLSYDKIEVGSSHV--AFVNNHGKNCLWVNLSPSVRGRISIMDVSDDL 1054

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
            +     +K F  G ++   V+++   +  G L L  ++ + +   +    KK  +     
Sbjct: 1055 SLAGNLEKHFPVGSALKVRVLSV--DAEKGHLDLSSRSSTGSTEVTWDSLKKNVA----- 1107

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIA 1123
             +   +T++    + +K G    G +H+ +++D  D++N ++     +  G+ +   ++ 
Sbjct: 1108 -LPGRVTKVTDRSVMVKLGDSVSGPVHLVDLSDNYDEANTLK-----YNKGEIIRVSVVE 1161

Query: 1124 --KSNKPDMKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
              KSNK          LS +PS +  + S +  + + +   +S G  + G+V  V ++  
Sbjct: 1162 VDKSNK-------RLRLSTRPSRILSSTSPVVDREITKLSQISSGDIIRGFVKNVTDKGV 1214

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
             + +   + A + I  S      +++++  F + + V G V++++     + L L+    
Sbjct: 1215 FVQLGGTVSALVKI--SNLSDRYIKDWKGNFQVDQLVKGRVINVDAAINQVELSLKASVV 1272

Query: 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
              +D T  ++  +M+    EG IV G++ K+      +VV    ++ G  H +E+    V
Sbjct: 1273 E-NDYTPPVTYKDMK----EGQIVTGKVRKVEEFGAFIVVDNSLNVSGLCHRSEMAEKPV 1327

Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
                        D    Y EG  VK KVL +    R    +  SLR S
Sbjct: 1328 E-----------DARRLYSEGDVVKAKVLSVDDEKR---RITFSLRPS 1361



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 211/925 (22%), Positives = 397/925 (42%), Gaps = 122/925 (13%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK----PTR 660
            G+ GF   S +    +D   E S  Y VG   + R++          LSF  +    P  
Sbjct: 467  GISGFVHISRVKDGKVDALYETSGPYKVGSEHRGRVVGYNSLDGMFLLSFQQQVLDQPFI 526

Query: 661  VSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
              ED  V +G +VSG V+  ++  N V  ++  +A+G S G +   HLAD  L+H    +
Sbjct: 527  RLED--VPVGEVVSGKVEKVIIGENGVSGLIVKLAEGIS-GYVHDSHLADVKLQHP---E 580

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
               + G     ++L +      L L+ K +L+NS   +  +   +       G + +   
Sbjct: 581  KKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVKNYDEVEVGMQTPGTITSFTA 640

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G  + F G + GF P S+  +    D  + + +GQ+V  ++LDVN E  R+ +S K   
Sbjct: 641  GGAQLEFFGGIRGFLPVSQMSEAYIKDPREHFRIGQAVSVHVLDVNPEERRMVVSCKDPS 700

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
                        F L+++ A+              +   +G ++  KV +  +  V V  
Sbjct: 701  A-----------FGLDKQAAL--------------KALKVGDIVSAKVSQKTEDEVFVDL 735

Query: 895  EEHSDVYGFITHH---------QLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFID 944
            EE        T H         Q A   +  G+ + +  +LD  +  R V LS K  F+ 
Sbjct: 736  EESGLKAIIRTGHLSDKSASKTQAAWKRINVGNTLSELVVLDKNERRRAVILSQKPSFV- 794

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 1004
                     +A K  +    ++D  V     A V  +    + +       +I   +   
Sbjct: 795  ---------EAGKNGKLLSNAEDATVGTVAPAYVREIGPYAVYVQFGGSLTAILPKTKLP 845

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA--------K 1056
             + Q+         QS+   +++  S     R+++   +  E E  +++ A        K
Sbjct: 846  KDAQEKEAFGMRKHQSIEVKIVS--SKPEQNRIIVAPASADEPEPVAAESAVNSVDDSIK 903

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLFSNFKIG 1114
              +   +G+++ A++T +K  +L +K      GRI +++  D   ++   +N     K  
Sbjct: 904  TINDVALGTILNAKVTSVKDTQLNVKVADNIQGRIDVSQFYDKWDDITNRKNPLQKVKAN 963

Query: 1115 QTVTARIIAKSNKPDMK--------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1166
            + +  R I   +  + +           L E + K S L   E+    L     + +G  
Sbjct: 964  EIIRVRAIGIHDSKNYRFLPFSHRSSHSLIEFTAKKSDLEAKEVE---LLSYDKIEVGSS 1020

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
               +V         + +S  ++ ++ I+D + + S     ++ F +G A+   VLS++ E
Sbjct: 1021 HVAFVNNHGKNCLWVNLSPSVRGRISIMDVSDDLSLAGNLEKHFPVGSALKVRVLSVDAE 1080

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K  L L  R      S  + +++ D+++  +     + GR++K+      ++V++G  + 
Sbjct: 1081 KGHLDLSSRS-----STGSTEVTWDSLKKNV----ALPGRVTKVTDR--SVMVKLGDSVS 1129

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
            G VH  +L +         YDE        Y++G+ ++  V+E+ ++ +    + LS R 
Sbjct: 1130 GPVHLVDLSD--------NYDEAN---TLKYNKGEIIRVSVVEVDKSNK---RLRLSTRP 1175

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
            S   +SST     S  VD   + + K+  +S   I++G+VKNVT KG F+ L   + A V
Sbjct: 1176 SRI-LSST-----SPVVD---REITKLSQISSGDIIRGFVKNVTDKGVFVQLGGTVSALV 1226

Query: 1407 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1466
             +SNLSD Y++  +  F + +LV GRV++V+    +VE++LK S         +    ++
Sbjct: 1227 KISNLSDRYIKDWKGNFQVDQLVKGRVINVDAAINQVELSLKASVVENDYTPPV-TYKDM 1285

Query: 1467 HVGDIVIGQIKRVESYGLFITIENT 1491
              G IV G++++VE +G FI ++N+
Sbjct: 1286 KEGQIVTGKVRKVEEFGAFIVVDNS 1310



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 173/408 (42%), Gaps = 70/408 (17%)

Query: 1106 NLFSNFKIGQTVTARIIAK---SNKPDMKKSFLWEL-SIKP-------------SMLTVS 1148
            +L + + +G  V ARII     + +P +  S L  + +++P              +L ++
Sbjct: 383  DLEAKYTVGSRVKARIICNFPAAREPKLGISLLPHIVNLQPKSSGKGSRAKAPLDLLPIA 442

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
                K    + +  IG  V   V  +      + ISR    ++   D+ YE S       
Sbjct: 443  SFVEKCTVRKVEPEIGLYVDAGVPGIS---GFVHISRVKDGKV---DALYETSG------ 490

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
             + +G    G V+  N    L  + L  FQ  + D+      D     +  G++V G++ 
Sbjct: 491  PYKVGSEHRGRVVGYNS---LDGMFLLSFQQQVLDQPFIRLED-----VPVGEVVSGKVE 542

Query: 1269 KIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
            K++   +GV GL+V++   + G VH + L ++ +  P     E +F       EG  VK 
Sbjct: 543  KVIIGENGVSGLIVKLAEGISGYVHDSHLADVKLQHP-----EKKFR------EGITVKA 591

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
            +VL +    R    + L+L+ +L              V++    ++  +++   M   G 
Sbjct: 592  RVLSVRPRKR---QLRLTLKKTL--------------VNSDAPIVKNYDEVEVGMQTPGT 634

Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
            + + T+ G  +     +   + +S +S+ Y++ P + F IG+ V+  VL V P  +R+ V
Sbjct: 635  ITSFTAGGAQLEFFGGIRGFLPVSQMSEAYIKDPREHFRIGQAVSVHVLDVNPEERRMVV 694

Query: 1446 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            + K  D       +   L  L VGDIV  ++ +     +F+ +E + L
Sbjct: 695  SCK--DPSAFGLDKQAALKALKVGDIVSAKVSQKTEDEVFVDLEESGL 740


>gi|154309384|ref|XP_001554026.1| hypothetical protein BC1G_07586 [Botryotinia fuckeliana B05.10]
          Length = 1678

 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 213/804 (26%), Positives = 353/804 (43%), Gaps = 71/804 (8%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG   LT  E  +I  ++DA  + +      K+ K   + +  A+ T     S    
Sbjct: 65  FPRGGASVLTPLEHKQI--QIDATRDVLFEQYGAKSSKPDGEDQEGADATKVKKKSKGKG 122

Query: 114 GI-----SGKLPRYANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                    ++     KI   + K + +G  + G V+++N  D+ + LP  L G      
Sbjct: 123 KSKKAAHDSEVEEETVKIEGLSYKRLVSGSLVLGQVSQINATDIALSLPNNLTGYVPITA 182

Query: 166 ALDPILDNEIEANEDNL-------------LPTIFHVGQLVSCIVLQLDDDKKEI----G 208
             D + +                       L  +F +GQ +   V+   DD        G
Sbjct: 183 ISDKVTERVEAIAAAEEDDADDEVEVEDIDLKKMFSLGQYLRAYVVSTSDDTNTATLGKG 242

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL 266
           KR+I LSLR      G++ + +     L A V S+EDHG I++ GL      GF+   ++
Sbjct: 243 KRRIELSLRPQHANNGVTPQNLINNTTLMASVTSVEDHGLIMNIGLEDTGIRGFMGAKDI 302

Query: 267 A-ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGM 323
             E    DV+ G +   +V  +    K V L +D   +      +      ++D  +PG 
Sbjct: 303 GYEVVLADVQEGAVFLCMVTGLSSNGKTVKLCADTQKIGNVKKSNYLTDAPTVDAFLPGT 362

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 383
            V T +  +   G+    +     T D+ H   +      +  +    KV  R++   P 
Sbjct: 363 AVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELEKKFKIGAKVRGRVICTFPN 422

Query: 384 S--RAVGLTLNPY---LLHNRA--------PPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430
           S  + +G++L  +   L   +A        P   + +  I ++  + +V+ G+GL +D+ 
Sbjct: 423 SDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESGVGLFVDVG 482

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 487
              +  P +V IS V + ++  LE+    YK GS  R R+LG+  L+G+    L+ S  E
Sbjct: 483 IKGI--PGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISLEKSVLE 540

Query: 488 GLVFTHSDVKPGMVVKGKV---IAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
                  D+K G VVKGKV   I  D    G +V     +  L P  H+++ +++ P KK
Sbjct: 541 QPYLRIEDLKIGEVVKGKVEKLIVNDKGVGGLLVNLAENISGLVPETHLADIQLLHPEKK 600

Query: 543 FKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           FK G  +  RVL      ++I +T KKTLV S+   L SY + T  + + G I  I   G
Sbjct: 601 FKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQSPGTIVNILNTG 660

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------F 654
             V+FY  V+GF P SE+      +P+  + +GQVV   ++   P ++++ +S      F
Sbjct: 661 AVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAKKLTVSCKDPSVF 720

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
            +      ++  +K+G +VS +V   + + + V +   G  K  +P  HL D  E+ +  
Sbjct: 721 GLAQQNALKN--LKIGEIVSALVIEKSNDDISVEIQGLGL-KAILPVGHLTDGSENKSRS 777

Query: 715 K-SVIKPGYEFDQLLVLDN-ESSNLL-LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
               I+ G     L VLD  E   L+ L+ K +L+ +AQ   L      +     VHG+V
Sbjct: 778 SFKNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKTVHGFV 837

Query: 770 CNIIETGCFVRFLGRLTGFAPRSK 793
            NI  T  FV+F G LTG  P++K
Sbjct: 838 KNITLTAVFVQFGGGLTGLLPKNK 861



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 247/1056 (23%), Positives = 440/1056 (41%), Gaps = 141/1056 (13%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM------SEFEIVKPGKKFKVGAELVF 551
            PG  V+  ++ V S G   +  G V     L H        E E     KKFK+GA++  
Sbjct: 360  PGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELE-----KKFKIGAKVRG 414

Query: 552  RVLGV----KSKRITVT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH 599
            RV+        +++ ++   H  +L + +     +     D L     +    I K+E  
Sbjct: 415  RVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESG 474

Query: 600  -GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL 652
             G FV     G+ GF   S +    ++   E +  Y VG V + R++  +S+     I+L
Sbjct: 475  VGLFVDVGIKGIPGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISL 534

Query: 653  --SFMMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD 706
              S + +P    ED  +K+G +V G V+  +V    V  ++  +A+  S G +P  HLAD
Sbjct: 535  EKSVLEQPYLRIED--LKIGEVVKGKVEKLIVNDKGVGGLLVNLAENIS-GLVPETHLAD 591

Query: 707  -HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
              L H    +   K G     ++L  D     + L+ K +L+NS          I     
Sbjct: 592  IQLLHP---EKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQ 648

Query: 765  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
              G + NI+ TG  V+F G + GF P S+  +    D ++ + +GQ V  ++L V+ E  
Sbjct: 649  SPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAK 708

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            ++T+S K             ++  + E ++ L   K N      ++G  + +++      
Sbjct: 709  KLTVSCKDPSVFGLAQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILP----- 763

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFI 943
                G +    E+     F          +  G V+   A+LD  + +RL+ L+ K   +
Sbjct: 764  ---VGHLTDGSENKSRSSF--------KNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALV 812

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS-------------L 990
                     + AQ K   R    D+   +TV+  V+ +    + +              +
Sbjct: 813  ---------KAAQNKTLLR-MFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNKI 862

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
            PE N  +       Y T +       +GQ      MA  +S       L   A  E    
Sbjct: 863  PEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNP 922

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLF 1108
              +  K      +G L +A ++ +K  ++ ++      GRI +++  D  S++   +   
Sbjct: 923  IDETIKSIEDITLGRLTKARVSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPL 982

Query: 1109 SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1159
              F   Q V  R++   +  + +         K+ ++ELS KPS  T S      L +  
Sbjct: 983  KTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTESAQDPVSLDK-- 1040

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
             + +G     +V  V  +   + IS +++ ++  LD + + S L++    F IG A+  H
Sbjct: 1041 -IKVGSSWLAFVNNVGVDCLWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVH 1099

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1277
            V  ++ E   L L  R  QD               TF  + +G IV G+++++      +
Sbjct: 1100 VKGVDVETNRLDLSARSSQDS-----------EALTFDKLSQGMIVPGKVTRV--NERQV 1146

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
            +VQ+   +   ++ T+L +          D  + DP S Y +   V+  V +I    +  
Sbjct: 1147 MVQLTDSISAPINLTDLCD----------DYSEADP-SKYSKNDIVRVCVTDIDVPNK-- 1193

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
              V LS R+S    SS    D           +  I  L  N IV+G+VK+V  KG F+ 
Sbjct: 1194 -RVRLSTRASRVMNSSAAVQD---------PEISSISQLKVNDIVRGFVKHVADKGLFVN 1243

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTA 1455
            L   + A V +S+LSD Y++  + EF + +LV G+V  V+ +   V+++LK S  D    
Sbjct: 1244 LGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYV 1303

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +    N   ++ V  +V G+I++VE +G+FI ++ +
Sbjct: 1304 APLTFN---DIQVNQVVTGKIRKVEDFGVFIVVDGS 1336



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 138/310 (44%), Gaps = 31/310 (10%)

Query: 543  FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            F +G+ +   V GV  ++ R+ ++ + +     L    ++ + +  +I  G +T++ +  
Sbjct: 1090 FPIGSAIRVHVKGVDVETNRLDLSARSSQDSEAL----TFDKLSQGMIVPGKVTRVNERQ 1145

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRI 650
              V+  + +      ++L  D      S Y    +V+           R+  S  ASR +
Sbjct: 1146 VMVQLTDSISAPINLTDLCDDYSEADPSKYSKNDIVRVCVTDIDVPNKRVRLSTRASRVM 1205

Query: 651  NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
            N S  ++   +S    +K+  +V G V  V    +  +V   G     +    L+D    
Sbjct: 1206 NSSAAVQDPEISSISQLKVNDIVRGFVKHVADKGL--FVNLGGNVTAYVRISDLSD---- 1259

Query: 711  ATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
             + +K   K  ++ DQL+     V+D   +++ LS K S+I+     P   + I  N VV
Sbjct: 1260 -SYIKD-WKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYVAPLTFNDIQVNQVV 1317

Query: 766  HGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
             G +  + + G F+   G   ++G   +S+  + +  D+ K Y  G +V++ +L +++E 
Sbjct: 1318 TGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSEGDAVKAIVLKMDTEK 1377

Query: 824  GRITLSLKQS 833
             RI+ S+K S
Sbjct: 1378 KRISFSMKAS 1387



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 128/601 (21%), Positives = 239/601 (39%), Gaps = 81/601 (13%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICLPG-GLRGLARAADALDPILDNEIEANEDN 181
            A +  LKN+  G  +  +V E +  D+ + + G GL+ +       D   +N+  ++  N
Sbjct: 723  AQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILPVGHLTDGS-ENKSRSSFKN 781

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS------LETVQEGMV 235
            +      VGQ++S + +    DK E  KR I L+ + +L+    +       + V+E   
Sbjct: 782  I-----RVGQVLSDLAVL---DKLE-PKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKT 832

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTR 291
            +  +VK+I      + FG    TG LP+N + E +        K    ++  V +ID  +
Sbjct: 833  VHGFVKNITLTAVFVQFG-GGLTGLLPKNKIPEKNLRLPDFGFKKYQTIEVKVLTIDHGQ 891

Query: 292  KVVYLSSDPDTVSKCVTKDLKG--------------ISIDLLVPGMMVSTRVQSILENGV 337
            +   LS    T  K   + L                 SI+ +  G +   RV S+ +  V
Sbjct: 892  RRFLLSMADATSDKKSNEPLAPGANQEAVNPIDETIKSIEDITLGRLTKARVSSVKDTQV 951

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVD--------PTSR 385
             +       G +D+    +++     K      ++  + V+ R+L +         P S 
Sbjct: 952  NVQLADNIQGRIDVSQAFDSWSDIKSKKQPLKTFSPKQIVDVRVLGIHDARNHRFLPISH 1011

Query: 386  AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS-- 443
              G TL   +    A PS  +     D   + ++  G   L  + +  V    +V IS  
Sbjct: 1012 RSGKTL---VFELSAKPSD-QTESAQDPVSLDKIKVGSSWLAFVNNVGVDC-LWVNISPN 1066

Query: 444  --------DVAEEE--VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
                    DV+++   ++ L   +  GS +RV + G   +E     +   S+ +    T 
Sbjct: 1067 VRGRISALDVSDDVSLLKDLAANFPIGSAIRVHVKGV-DVETNRLDLSARSSQDSEALTF 1125

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKKFKVGAELVFR 552
              +  GM+V GKV  V+    +VQ    + A   L  +  ++    P K  K     + R
Sbjct: 1126 DKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEADPSKYSK---NDIVR 1182

Query: 553  V----LGVKSKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFV 603
            V    + V +KR+ ++ + + V +  A      +SS ++     I  G++  +   G FV
Sbjct: 1183 VCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHVADKGLFV 1242

Query: 604  RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
                 V  +   S+L      +  S + V Q+VK ++         + LS  +KP+ + +
Sbjct: 1243 NLGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLS--LKPSVIDK 1300

Query: 664  D 664
            D
Sbjct: 1301 D 1301



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 22/277 (7%)

Query: 308  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + +   +  + Y
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEAD-PSKY 1175

Query: 368  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVR 418
            +++  V   +  +D  ++ V L+     + N +           S +KV DI        
Sbjct: 1176 SKNDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHV 1235

Query: 419  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
             D+GL + L    T     AYV ISD+++  ++  + +++    V+ ++     +     
Sbjct: 1236 ADKGLFVNLGGNVT-----AYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQ 1290

Query: 479  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 533
              LK S  +       T +D++   VV GK+  V+ FG  +   G   V  LC    M+E
Sbjct: 1291 LSLKPSVIDKDYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAE 1350

Query: 534  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
              +    K +  G  +   VL + +  KRI+ + K +
Sbjct: 1351 KRVHDVKKLYSEGDAVKAIVLKMDTEKKRISFSMKAS 1387


>gi|156058222|ref|XP_001595034.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980]
 gi|154700910|gb|EDO00649.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1789

 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 314/1370 (22%), Positives = 569/1370 (41%), Gaps = 158/1370 (11%)

Query: 40   AQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERK 99
            A  ++ P +++V  FPRGG   LT  E  +I      + +A    L ++   K  K + +
Sbjct: 52   ATKISRPKEEEV-AFPRGGASVLTPLEHKQI------QIDATRDVLFEQYGAKPSKPDGE 104

Query: 100  ANETVDDLGSLFGDGISGKLPRYANK------------ITLKNISAGMKLWGVVAEVNEK 147
              E  D           GK  + A              ++ K +  G  + G V+++N  
Sbjct: 105  VQEGEDTSKVKKKGKGKGKGKKAAQDTDVEEEAVKIEGLSYKRLVPGSLVLGQVSQINAT 164

Query: 148  DLVICLPGGLRGLARAADALDPILDNEIEA--------------NEDNLLPTIFHVGQLV 193
            D+ + LP  L G        D   +  IEA               +D  L  +F +GQ +
Sbjct: 165  DIALSLPNNLTGYVPITSISDKATE-RIEAIAAAEEDDVEDELEVQDIDLKKMFSMGQYL 223

Query: 194  SCIVLQLDDDKKEI----GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
               V+   DD        GKR+I LSLR       ++ + +     L A V S+EDHG I
Sbjct: 224  RAYVVSTSDDTNTATLGKGKRRIELSLRPQHANNAVTSQNLIANTTLMASVTSVEDHGLI 283

Query: 250  LHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
            ++ GL      GF+   ++     + DV+ G +   +V  +    K V L +D   +   
Sbjct: 284  MNIGLEDSGIRGFMGAKDIGHEVVLADVQEGAVFLCMVTGLSSNGKTVKLCADTQKIGNL 343

Query: 307  VTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
               +      ++D  +PG  V   +  +   GV    +     T D+ H          +
Sbjct: 344  KKSNYLTDAPTVDAFLPGTAVEILIVDVSSRGVTGKVMGMVDVTADLMHSGTGVMNQELE 403

Query: 365  NDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLH----------NRAPP-SHVKVGDIY 411
              +    KV  R++   P S  + +G++L  ++            N+  P   + +  I 
Sbjct: 404  KKFKIGAKVRGRVICTFPNSDPQKLGVSLLDHVASLSPQQAGKPGNKVDPLDALPLSAII 463

Query: 412  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRIL 468
            ++  + +V+ G+GL +D+    +  P +V IS V + ++  LE+    YK GS  R R+L
Sbjct: 464  EEVTIKKVESGVGLFVDVGVKGI--PGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVL 521

Query: 469  GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSFGA-IVQFPGGVK 523
             +  L+G+    L+ S  E       D+K G VVKGKV    +  + FG  +V     + 
Sbjct: 522  AYNSLDGVYLVSLEKSVLEQAYLRIEDLKVGEVVKGKVEKLIVNANGFGGLLVNLAENIS 581

Query: 524  ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYA 581
             L P  H+++ +++ P KKFK G  +  RVL      ++I +T KKTLV S+    +SY 
Sbjct: 582  GLVPETHLADVQLLHPEKKFKEGMSVTARVLSTDPGKRQIRLTLKKTLVNSESPAFTSYD 641

Query: 582  EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                 + + G I  I   G  V+FY  ++GF P SE+      +PS  + VGQVV   ++
Sbjct: 642  GIIVGMQSPGTIVNIMNTGAVVQFYGNIRGFLPVSEMSEAYIQDPSQHFKVGQVVNVHVL 701

Query: 642  SSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
               P S+++ +S      F +      ++  +K+G ++S +V   + + + V +   G  
Sbjct: 702  KVDPESQKLTVSCKDPSVFGLAQQNALKN--LKIGEILSALVIEKSNDDISVEIQGLGL- 758

Query: 696  KGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQ- 751
            K T+P  HL D  E+ +      I+ G     L VLD       ++L+ K +L+ +AQ  
Sbjct: 759  KATLPVGHLTDGSENKSRSSFKNIRVGQVLTDLAVLDKHEQRRLIVLTNKPALVKAAQSK 818

Query: 752  -LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
             L      +  +  VHG+V NI  T  FV+F G LTG  P++   +         +   Q
Sbjct: 819  TLLRLFDDVKKDRTVHGFVKNITLTAVFVQFGGGLTGLLPKNMIPEKNLRLPDFGFKKWQ 878

Query: 811  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            +V   ++ +++   R  LSL      +T     QE          +         +K ++
Sbjct: 879  TVEVKVIKIDNGLRRFLLSL----ADATSDKKPQESLAPGTNQDAVNPVDET---IKSID 931

Query: 871  GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA-------A 923
               +G + + ++    D  V V   ++  + G I   Q   +  E  S  Q         
Sbjct: 932  DITLGRLTKARISSVKDTQVNVQLADN--IQGRIDVSQAFDSWSEIKSKKQPLKSFSPKQ 989

Query: 924  ILDV-------AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVN 975
            I+DV       A+  R + +S ++     F E ++    Q +  +   S D + +  +  
Sbjct: 990  IIDVRVLGIHDARNHRFLPISHRSGKTLVF-ELSAKPSDQTEAAQDPVSLDKIKLGSSWL 1048

Query: 976  AIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            A V  V  + L ++L P     I    VS D +  K  +  F  G ++   V  +   + 
Sbjct: 1049 AFVNNVGADCLWVNLSPNVRGRISALDVSDDVSLLKDLEANFPIGSAIRVHVKGVDVETN 1108

Query: 1034 AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
              RL L  ++  ++E  +  R  K      G +V  ++T +   ++ ++        I++
Sbjct: 1109 --RLDLSARSSQDSEALTFDRLSK------GMIVPGKVTRVNERQVMVQITDSISAPINL 1160

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
            T++ DD S    + +S                 K D+ +  + +L I    + +S   S+
Sbjct: 1161 TDLCDDFSEADPSKYS-----------------KNDIVRVCVTDLDIPNKRVRLSTRASR 1203

Query: 1154 LL-----FEECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1202
            ++      ++ ++S      +   V G+V  V ++   + +  ++ A + I D     S 
Sbjct: 1204 VMNSSAAVQDAEISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVTAYVRISD--LSDSY 1261

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF---QDGISDKTVDISNDNMQTFIHE 1259
            +++++  F + + V G V  +++    ++L L+P    +D I+  T    ND     IH 
Sbjct: 1262 IKDWKSEFQVDQLVKGKVTVVDEVLNHIQLSLKPSVIDKDYIAPLTF---ND-----IHV 1313

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
            G ++ G+I K+      +VV    ++ G  H +E+    V D    Y +G
Sbjct: 1314 GQVITGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSDG 1363



 Score =  152 bits (384), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 287/1283 (22%), Positives = 515/1283 (40%), Gaps = 188/1283 (14%)

Query: 311  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI------------------- 351
            ++G+S   LVPG +V  +V  I    + LS     TG V I                   
Sbjct: 140  IEGLSYKRLVPGSLVLGQVSQINATDIALSLPNNLTGYVPITSISDKATERIEAIAAAEE 199

Query: 352  -----------FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA 400
                         L+  F    +   Y      +     +    R + L+L P   +N A
Sbjct: 200  DDVEDELEVQDIDLKKMFSMGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANN-A 258

Query: 401  PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
              S   + +    + V  V+   GL+++I         ++   D+  E V       +EG
Sbjct: 259  VTSQNLIANTTLMASVTSVEDH-GLIMNIGLEDSGIRGFMGAKDIGHEVVLA---DVQEG 314

Query: 461  SCVRVRILGFRH--------LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
            +     + G            +    G LK S +     T     PG  V+  ++ V S 
Sbjct: 315  AVFLCMVTGLSSNGKTVKLCADTQKIGNLKKSNYLTDAPTVDAFLPGTAVEILIVDVSSR 374

Query: 513  GAIVQFPGGVKALCPLPHM------SEFEIVKPGKKFKVGAELVFRVLGV----KSKRIT 562
            G   +  G V     L H        E E     KKFK+GA++  RV+        +++ 
Sbjct: 375  GVTGKVMGMVDVTADLMHSGTGVMNQELE-----KKFKIGAKVRGRVICTFPNSDPQKLG 429

Query: 563  VT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH-GCFVRF-YNGVQGF 612
            V+   H  +L   +     +  +  D L     I    I K+E   G FV     G+ GF
Sbjct: 430  VSLLDHVASLSPQQAGKPGNKVDPLDALPLSAIIEEVTIKKVESGVGLFVDVGVKGIPGF 489

Query: 613  APRSELG---LDPGCEPSSMYHVGQVVKCRIMS--SIPASRRINLS-FMMKPTRVSEDDL 666
               S +    ++   E +  Y VG V + R+++  S+     ++L   +++   +  +DL
Sbjct: 490  VHISRVKDGKIETLEETTGPYKVGSVHRGRVLAYNSLDGVYLVSLEKSVLEQAYLRIEDL 549

Query: 667  VKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
             K+G +V G V+ +  NA     ++  +A+  S G +P  HLAD  L H    +   K G
Sbjct: 550  -KVGEVVKGKVEKLIVNANGFGGLLVNLAENIS-GLVPETHLADVQLLHP---EKKFKEG 604

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                 ++L  D     + L+ K +L+NS     +    I       G + NI+ TG  V+
Sbjct: 605  MSVTARVLSTDPGKRQIRLTLKKTLVNSESPAFTSYDGIIVGMQSPGTIVNIMNTGAVVQ 664

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + VGQ V  ++L V+ E+ ++T+S K         
Sbjct: 665  FYGNIRGFLPVSEMSEAYIQDPSQHFKVGQVVNVHVLKVDPESQKLTVSCKDPSVFGLAQ 724

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                ++  + E ++ L   K N      ++G  + + +          G +    E+   
Sbjct: 725  QNALKNLKIGEILSALVIEKSNDDISVEIQGLGLKATLP--------VGHLTDGSENKSR 776

Query: 901  YGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 959
              F          +  G V+   A+LD  +  RL+ L+ K   +         + AQ K 
Sbjct: 777  SSF--------KNIRVGQVLTDLAVLDKHEQRRLIVLTNKPALV---------KAAQSKT 819

Query: 960  RKR---EASKDLGVHQTVNAIV-------------EIVKENYLVLSLPEYNHSIGYASVS 1003
              R   +  KD  VH  V  I               ++ +N +    PE N  +      
Sbjct: 820  LLRLFDDVKKDRTVHGFVKNITLTAVFVQFGGGLTGLLPKNMI----PEKNLRLPDFGFK 875

Query: 1004 DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV 1063
             + T +    +  NG       +A  +S    +  L      +      +  K      +
Sbjct: 876  KWQTVEVKVIKIDNGLRRFLLSLADATSDKKPQESLAPGTNQDAVNPVDETIKSIDDITL 935

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLFSNFKIGQTVTARI 1121
            G L +A I+ +K  ++ ++      GRI +++  D  S +   +    +F   Q +  R+
Sbjct: 936  GRLTKARISSVKDTQVNVQLADNIQGRIDVSQAFDSWSEIKSKKQPLKSFSPKQIIDVRV 995

Query: 1122 IAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            +   +  + +         K+ ++ELS KPS  T +      L +   + +G     +V 
Sbjct: 996  LGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTEAAQDPVSLDK---IKLGSSWLAFVN 1052

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             V  +   + +S +++ ++  LD + + S L++ +  F IG A+  HV  ++ E   L L
Sbjct: 1053 NVGADCLWVNLSPNVRGRISALDVSDDVSLLKDLEANFPIGSAIRVHVKGVDVETNRLDL 1112

Query: 1233 VLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
              R  QD               TF  + +G IV G+++++      ++VQI   +   ++
Sbjct: 1113 SARSSQDS-----------EALTFDRLSKGMIVPGKVTRV--NERQVMVQITDSISAPIN 1159

Query: 1291 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
             T+L +          D  + DP S Y +   V+  V ++    +    V LS R+S   
Sbjct: 1160 LTDLCD----------DFSEADP-SKYSKNDIVRVCVTDLDIPNK---RVRLSTRAS--- 1202

Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
                NSS    D +     +  I  L  N IV+G+VK+V  KG F+ L   + A V +S+
Sbjct: 1203 -RVMNSSAAVQDAE-----ISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVTAYVRISD 1256

Query: 1411 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS--NLHV 1468
            LSD Y++  + EF + +LV G+V  V+ +   ++++LK S      +  I  L+  ++HV
Sbjct: 1257 LSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHIQLSLKPS---VIDKDYIAPLTFNDIHV 1313

Query: 1469 GDIVIGQIKRVESYGLFITIENT 1491
            G ++ G+I++VE +G+FI ++ +
Sbjct: 1314 GQVITGKIRKVEDFGVFIVVDGS 1336



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 135/310 (43%), Gaps = 31/310 (10%)

Query: 543  FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            F +G+ +   V GV  ++ R+ ++ + +     L    ++   +  +I  G +T++ +  
Sbjct: 1090 FPIGSAIRVHVKGVDVETNRLDLSARSSQDSEAL----TFDRLSKGMIVPGKVTRVNERQ 1145

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRI 650
              V+  + +      ++L  D      S Y    +V+           R+  S  ASR +
Sbjct: 1146 VMVQITDSISAPINLTDLCDDFSEADPSKYSKNDIVRVCVTDLDIPNKRVRLSTRASRVM 1205

Query: 651  NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
            N S  ++   +S    +K+  +V G V  V    +  +V   G     +    L+D    
Sbjct: 1206 NSSAAVQDAEISSISQLKVNDIVRGFVKHVADKGL--FVNLGGNVTAYVRISDLSD---- 1259

Query: 711  ATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
             + +K   K  ++ DQL+     V+D   +++ LS K S+I+     P   + IH   V+
Sbjct: 1260 -SYIKD-WKSEFQVDQLVKGKVTVVDEVLNHIQLSLKPSVIDKDYIAPLTFNDIHVGQVI 1317

Query: 766  HGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
             G +  + + G F+   G   ++G   +S+  + +  D+ K Y  G  V++ +L ++ E 
Sbjct: 1318 TGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSDGDEVKAIVLKMDPEK 1377

Query: 824  GRITLSLKQS 833
             RI+ S+K S
Sbjct: 1378 KRISFSMKAS 1387



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 36/284 (12%)

Query: 308  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF----PTTNW 363
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + F    P+   
Sbjct: 1117 SQDSEALTFDRLSKGMIVPGKVTRVNERQVMVQITDSISAPINLTDLCDDFSEADPSKYS 1176

Query: 364  KNDYNQHKKVNARILFVD---PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
            KND         R+   D   P  R    T    ++++ A     ++  I  Q KV  + 
Sbjct: 1177 KNDI-------VRVCVTDLDIPNKRVRLSTRASRVMNSSAAVQDAEISSI-SQLKVNDIV 1228

Query: 421  RGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG---- 469
            RG        GL +++     +  AYV ISD+++  ++  + +++    V+ ++      
Sbjct: 1229 RGFVKHVADKGLFVNLGG---NVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEV 1285

Query: 470  FRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALC 526
              H++  L   ++       L F  +D+  G V+ GK+  V+ FG  +   G   V  LC
Sbjct: 1286 LNHIQLSLKPSVIDKDYIAPLTF--NDIHVGQVITGKIRKVEDFGVFIVVDGSANVSGLC 1343

Query: 527  PLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
                M+E  +    K +  G E+   VL +  + KRI+ + K +
Sbjct: 1344 HQSEMAEKRVHDVKKLYSDGDEVKAIVLKMDPEKKRISFSMKAS 1387



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 148/689 (21%), Positives = 271/689 (39%), Gaps = 91/689 (13%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICLPG-GLRGLARAADALDPILDNEIEANEDN 181
            A +  LKN+  G  L  +V E +  D+ + + G GL+         D   +N+  ++  N
Sbjct: 723  AQQNALKNLKIGEILSALVIEKSNDDISVEIQGLGLKATLPVGHLTDGS-ENKSRSSFKN 781

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS------LETVQEGMV 235
            +      VGQ+++ + +    DK E  +R I L+ + +L+    S       + V++   
Sbjct: 782  I-----RVGQVLTDLAVL---DKHE-QRRLIVLTNKPALVKAAQSKTLLRLFDDVKKDRT 832

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTR 291
            +  +VK+I      + FG    TG LP+N + E +        K    ++  V  ID   
Sbjct: 833  VHGFVKNITLTAVFVQFG-GGLTGLLPKNMIPEKNLRLPDFGFKKWQTVEVKVIKIDNGL 891

Query: 292  KVVYLS-----SD--------PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGV 337
            +   LS     SD        P T    V    + I SID +  G +   R+ S+ +  V
Sbjct: 892  RRFLLSLADATSDKKPQESLAPGTNQDAVNPVDETIKSIDDITLGRLTKARISSVKDTQV 951

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVD--------PTSR 385
             +       G +D+    +++     K      ++  + ++ R+L +         P S 
Sbjct: 952  NVQLADNIQGRIDVSQAFDSWSEIKSKKQPLKSFSPKQIIDVRVLGIHDARNHRFLPISH 1011

Query: 386  AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL----------LDIPSTPVS 435
              G TL   +    A PS  +     D   + ++  G   L          L +  +P +
Sbjct: 1012 RSGKTL---VFELSAKPSD-QTEAAQDPVSLDKIKLGSSWLAFVNNVGADCLWVNLSP-N 1066

Query: 436  TPAYVTISDVAEEE--VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
                ++  DV+++   ++ LE  +  GS +RV + G   +E     +   S+ +    T 
Sbjct: 1067 VRGRISALDVSDDVSLLKDLEANFPIGSAIRVHVKGV-DVETNRLDLSARSSQDSEALTF 1125

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKKFKVGAELVFR 552
              +  GM+V GKV  V+    +VQ    + A   L  +  +F    P K  K     + R
Sbjct: 1126 DRLSKGMIVPGKVTRVNERQVMVQITDSISAPINLTDLCDDFSEADPSKYSK---NDIVR 1182

Query: 553  V----LGVKSKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFV 603
            V    L + +KR+ ++ + + V +  A      +SS ++     I  G++  +   G FV
Sbjct: 1183 VCVTDLDIPNKRVRLSTRASRVMNSSAAVQDAEISSISQLKVNDIVRGFVKHVADKGLFV 1242

Query: 604  RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
                 V  +   S+L      +  S + V Q+VK ++         I LS  +KP+ + +
Sbjct: 1243 NLGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHIQLS--LKPSVIDK 1300

Query: 664  DDLVKL-------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
            D +  L       G +++G +  V    V + V       G      +A+   H   +K 
Sbjct: 1301 DYIAPLTFNDIHVGQVITGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHD--VKK 1358

Query: 717  VIKPGYEFDQL-LVLDNESSNLLLSAKYS 744
            +   G E   + L +D E   +  S K S
Sbjct: 1359 LYSDGDEVKAIVLKMDPEKKRISFSMKAS 1387


>gi|358379965|gb|EHK17644.1| hypothetical protein TRIVIDRAFT_76054 [Trichoderma virens Gv29-8]
          Length = 1796

 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 217/808 (26%), Positives = 351/808 (43%), Gaps = 89/808 (11%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEVDAEF---EAVERGLHKKNKKKK-------KKTER 98
           DD PVFPRGGG  LT  E+ +I  E  A+    E  E G   + KK K       KKT++
Sbjct: 65  DDEPVFPRGGGSVLTPLEQKKIQMEAKADAIREEEFETGAKSQKKKAKKSTAKSDKKTDK 124

Query: 99  KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
           KA E    + SL                  K +  G  + G V  ++   L + LP  L 
Sbjct: 125 KAEEDTIKIESL----------------NFKRLVKGSLVLGQVTRISNLSLEVSLPNNLI 168

Query: 159 GLARAADALDPILDNEIEANEDNL---------------LPTIFHVGQLVSCIVLQ-LDD 202
           G A    A+   L + ++ + +                 L T+F VGQ V   V+  +D 
Sbjct: 169 GHASIV-AISAQLTSRLQGDAEKEGESDEEESSDESDVNLKTMFKVGQYVRAYVVSTMDG 227

Query: 203 DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
                G+RKI LSLR S    GL  + V     + A V S+E+ G ++  G+P+  GFLP
Sbjct: 228 AAGGKGRRKIELSLRPSEANTGLEKDDVVPNSTVMASVVSVEERGCVMDLGIPNLNGFLP 287

Query: 263 RNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL 319
              +  +  ID   ++PG +    V   + + K+  LS   D +           +I+  
Sbjct: 288 NGEI--DPLIDQERLQPGAVFLCQVTGKN-SNKIAQLSLKQDKLGSTKAFPADATTINTF 344

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           +PG +V+  V      G+    +     T D+ H        + K  Y    KV ARI+ 
Sbjct: 345 LPGTIVNILVSDNEGRGLAGKIMGAVDATADLIHSGIGPNDDDLKAKYKIGSKVKARIIC 404

Query: 380 VDPTSR--AVGLTLNPYLL----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 427
             PT++   +G++L P+++            R P   + +    ++  V  V+  +GL +
Sbjct: 405 NFPTAKDPKLGISLLPHIMSLTQKQQDDDEKRRPIEVMPISSFVEKCTVRHVEPDIGLFV 464

Query: 428 DIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKAS 484
           D     +    +V IS V + +V  L +    +K G+  R R++G+  ++GL +     S
Sbjct: 465 DTGIAGLG--GFVHISRVKDGKVDALYESSGPFKIGTVHRGRVVGYNEMDGLFSISFAKS 522

Query: 485 AFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
             E       D+  G V+ G++  +        G I++   G+       HMS+  +  P
Sbjct: 523 LLEQQYIRLEDIPLGSVINGEIEKLVIKEQGVTGLIIKIADGISGFVTETHMSDIRLQHP 582

Query: 540 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            KKF+ G ++  RVL V    +++ +T KKTLV S+   + SY + +  + T G I K++
Sbjct: 583 EKKFREGMKVKARVLSVNFAKRQMRLTLKKTLVNSEAPTIKSYDDVSIGMQTLGTIVKVQ 642

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--- 654
           ++G  ++FY  ++GF P SE+      +P   +  GQVV    +   P +RR  +S    
Sbjct: 643 QNGAHIQFYGKLRGFLPVSEMSEAYIRDPMEHFRAGQVVSVHALEVDPEARRFIVSCKDP 702

Query: 655 ----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LE 709
               + K T +     +KLG +VS  V   T + + V ++     K  +P  HL D    
Sbjct: 703 GAFGLEKQTALKN---LKLGDIVSAKVTQKTEDQIFVELVDSQL-KAILPVGHLTDKSTS 758

Query: 710 HATVMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVV 765
                   I  G     L+VL+ NE+   + L+ K SL+ ++Q   L          +VV
Sbjct: 759 KNQYAWKRISAGQTLSNLMVLEKNENRRAITLTQKPSLVKASQDNNLLKSFHDAKVGAVV 818

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSK 793
            G+V NI  T  FV+F G L    PR +
Sbjct: 819 QGFVRNITVTAVFVQFAGSLNALLPRGR 846



 Score =  150 bits (380), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 206/916 (22%), Positives = 408/916 (44%), Gaps = 132/916 (14%)

Query: 620  LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGV 676
            +D   E S  + +G V + R++         ++SF   +++   +  +D + LGS+++G 
Sbjct: 485  VDALYESSGPFKIGTVHRGRVVGYNEMDGLFSISFAKSLLEQQYIRLED-IPLGSVINGE 543

Query: 677  VD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVL 730
            ++  V+    V  ++  IA G S G +   H++D  L+H    +   + G +   ++L +
Sbjct: 544  IEKLVIKEQGVTGLIIKIADGIS-GFVTETHMSDIRLQHP---EKKFREGMKVKARVLSV 599

Query: 731  DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
            +     + L+ K +L+NS          +       G +  + + G  ++F G+L GF P
Sbjct: 600  NFAKRQMRLTLKKTLVNSEAPTIKSYDDVSIGMQTLGTIVKVQQNGAHIQFYGKLRGFLP 659

Query: 791  RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
             S+  +    D  + +  GQ V  + L+V+ E  R  +S K               F LE
Sbjct: 660  VSEMSEAYIRDPMEHFRAGQVVSVHALEVDPEARRFIVSCKDPGA-----------FGLE 708

Query: 851  EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 910
            ++ A+              +   +G ++  KV +  +  + V   + S +   +    L 
Sbjct: 709  KQTAL--------------KNLKLGDIVSAKVTQKTEDQIFVELVD-SQLKAILPVGHL- 752

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASKD 967
              T +S S  Q A   ++  + L +L +         E N NR+A    +K    +AS+D
Sbjct: 753  --TDKSTSKNQYAWKRISAGQTLSNLMV--------LEKNENRRAITLTQKPSLVKASQD 802

Query: 968  LGVHQT-----VNAIVEIVKENYLVLS------------LPEYNHSIGYASVSDYNTQKF 1010
              + ++     V A+V+    N  V +            LP    S    S  D+  +KF
Sbjct: 803  NNLLKSFHDAKVGAVVQGFVRNITVTAVFVQFAGSLNALLPRGRLSAEAQSQPDFGLRKF 862

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
               +      +I+T+  L     A     + + +S    +S+K    +     GS  QA 
Sbjct: 863  ESIEV----RIISTIPDLKRILVAPADSPVAEPVSSKPKTSTKAPAPEDGLAFGSTAQAR 918

Query: 1071 ITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIAKSNK 1127
            IT IK  +L ++       GRI ++++ D   ++V+  +    F   Q +  +I+   + 
Sbjct: 919  ITSIKDTQLNVQLVDSEIQGRIDVSQIFDKWEDIVDPKDPLDKFNKKQILRVKILGVHDA 978

Query: 1128 PDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1177
             D +  FL           EL+ KPS L+ ++  + +  +  D+ +G     +V  V ++
Sbjct: 979  KDHR--FLPFSHRSAHSVMELTTKPSDLS-NDAPNPISLD--DLKVGDNHIAFVNNVTSQ 1033

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            +  + +S +++ ++ I++++ + S L + +  F +G A+   V S++ +   L L     
Sbjct: 1034 YLWVNLSPNVRGRISIMEASDDLSLLNDLEANFPVGSALKARVTSVDAKNNRLDL----- 1088

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
                S ++ + S       + +  I+ G+I+K+      ++V++   + G VH  ++ + 
Sbjct: 1089 ----SARSPNASEAITWASLKQNMILPGKITKV--NERQVLVKLSETVSGPVHLPDMVD- 1141

Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
                     D G  D L  Y +G  V+  ++++  + +    + LS+R S   MSST   
Sbjct: 1142 ---------DYGSVDTLK-YKKGDIVRVSIVDVDPSNK---RIRLSMRPSRI-MSST--- 1184

Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1417
                 +    K + KI  L+   IV+G+VKNV  KG F++L  ++ A V +SNLSD +++
Sbjct: 1185 -----LPVADKEISKITQLATGDIVRGFVKNVADKGLFVLLGGQVTAFVKISNLSDRFLK 1239

Query: 1418 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQ 1475
              +  F I +LV GR++S++  + ++E++LK+S  D         N++     G IV G 
Sbjct: 1240 EWKDSFQIDQLVKGRIISLDAATSQLELSLKSSVVDEDYTPPLGYNDIKE---GQIVTGV 1296

Query: 1476 IKRVESYGLFITIENT 1491
            +++VE +G FI ++N+
Sbjct: 1297 VRKVEEFGAFILVDNS 1312



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 33/237 (13%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            G ++ G I K++    GV GL+++I   + G V  T + +I +  P     E +F     
Sbjct: 537  GSVINGEIEKLVIKEQGVTGLIIKIADGISGFVTETHMSDIRLQHP-----EKKFR---- 587

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
              EG  VK +VL ++   R    + L+L+ +L              V++    ++  +D+
Sbjct: 588  --EGMKVKARVLSVNFAKR---QMRLTLKKTL--------------VNSEAPTIKSYDDV 628

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            S  M   G +  V   G  I    KL   + +S +S+ Y+  P + F  G++V+   L V
Sbjct: 629  SIGMQTLGTIVKVQQNGAHIQFYGKLRGFLPVSEMSEAYIRDPMEHFRAGQVVSVHALEV 688

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            +P ++R  V+ K  D       +   L NL +GDIV  ++ +     +F+ + ++ L
Sbjct: 689  DPEARRFIVSCK--DPGAFGLEKQTALKNLKLGDIVSAKVTQKTEDQIFVELVDSQL 743



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 117/546 (21%), Positives = 213/546 (39%), Gaps = 85/546 (15%)

Query: 367  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 426
            + +  KV AR+L V+   R + LTL   L+++ AP         YD   +    + LG +
Sbjct: 586  FREGMKVKARVLSVNFAKRQMRLTLKKTLVNSEAPTIKS-----YDDVSIGM--QTLGTI 638

Query: 427  LDIPSTPVSTPAY------VTISDVAEEEVRKLEKKYKEGSCVRVRIL-----GFRHL-- 473
            + +         Y      + +S+++E  +R   + ++ G  V V  L       R +  
Sbjct: 639  VKVQQNGAHIQFYGKLRGFLPVSEMSEAYIRDPMEHFRAGQVVSVHALEVDPEARRFIVS 698

Query: 474  --EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPH 530
              +  A G+ K +A + L       K G +V  KV         V+     +KA+ P+ H
Sbjct: 699  CKDPGAFGLEKQTALKNL-------KLGDIVSAKVTQKTEDQIFVELVDSQLKAILPVGH 751

Query: 531  MSEFEIVK---PGKKFKVGAELV-FRVLGVKSKR--ITVTHKKTLVKSKL--AILSSYAE 582
            +++    K     K+   G  L    VL     R  IT+T K +LVK+     +L S+ +
Sbjct: 752  LTDKSTSKNQYAWKRISAGQTLSNLMVLEKNENRRAITLTQKPSLVKASQDNNLLKSFHD 811

Query: 583  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
            A    +  G++  I     FV+F   +    PR  L  +   +P       + ++ RI+S
Sbjct: 812  AKVGAVVQGFVRNITVTAVFVQFAGSLNALLPRGRLSAEAQSQPDFGLRKFESIEVRIIS 871

Query: 643  SIPASRRINLSFMMKP------------TRV-SEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
            +IP  +RI ++    P            T+  + +D +  GS     +  +    + V +
Sbjct: 872  TIPDLKRILVAPADSPVAEPVSSKPKTSTKAPAPEDGLAFGSTAQARITSIKDTQLNVQL 931

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD----------QLLVLDNESSNLLL 739
            +     +G I    + D  E       ++ P    D          ++L + +   +  L
Sbjct: 932  VDSEI-QGRIDVSQIFDKWE------DIVDPKDPLDKFNKKQILRVKILGVHDAKDHRFL 984

Query: 740  SAKYSLINSAQQL---PSDASHIHPNSVV---------H-GYVCNIIETGCFVRFLGRLT 786
               +   +S  +L   PSD S+  PN +          H  +V N+     +V     + 
Sbjct: 985  PFSHRSAHSVMELTTKPSDLSNDAPNPISLDDLKVGDNHIAFVNNVTSQYLWVNLSPNVR 1044

Query: 787  GFAPRSKAVDGQR--ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS--TDASF 842
            G     +A D      DL   + VG ++++ +  V+++  R+ LS +    S   T AS 
Sbjct: 1045 GRISIMEASDDLSLLNDLEANFPVGSALKARVTSVDAKNNRLDLSARSPNASEAITWASL 1104

Query: 843  MQEHFL 848
             Q   L
Sbjct: 1105 KQNMIL 1110



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L+  V S+D     + LS+     S+ +T     +  ++++PG     ++  + E  
Sbjct: 1069 GSALKARVTSVDAKNNRLDLSARSPNASEAIT--WASLKQNMILPG-----KITKVNERQ 1121

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            V++      +G V +  + + + + +    Y +   V   I+ VDP+++ + L++ P  +
Sbjct: 1122 VLVKLSETVSGPVHLPDMVDDYGSVDTLK-YKKGDIVRVSIVDVDPSNKRIRLSMRPSRI 1180

Query: 397  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
             +   P         + +  GDI         D+GL +LL    T     A+V IS++++
Sbjct: 1181 MSSTLPVADKEISKITQLATGDIVRGFVKNVADKGLFVLLGGQVT-----AFVKISNLSD 1235

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 500
              +++ +  ++    V+ RI+        AT  L+ S    +V         ++D+K G 
Sbjct: 1236 RFLKEWKDSFQIDQLVKGRIISL----DAATSQLELSLKSSVVDEDYTPPLGYNDIKEGQ 1291

Query: 501  VVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GV 556
            +V G V  V+ FGA  +V     V  LC    M++  +    K +K G ++  RVL   V
Sbjct: 1292 IVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNAVKDATKLYKEGDKVKARVLEVDV 1351

Query: 557  KSKRITVTHKKTLVKSKLAILSSYAEA 583
              +RI+   K +  + +   ++S +EA
Sbjct: 1352 SKRRISFGLKPSFFEDEDTDMASDSEA 1378



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 136/351 (38%), Gaps = 86/351 (24%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF-----------------MMKP---TRVSEDD-LVK 668
            + VG  +K R+ S    + R++LS                  M+ P   T+V+E   LVK
Sbjct: 1066 FPVGSALKARVTSVDAKNNRLDLSARSPNASEAITWASLKQNMILPGKITKVNERQVLVK 1125

Query: 669  LGSLVSGVVDVVTPNAVVVY--VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            L   VSG V +  P+ V  Y  V    Y KG I    + D                    
Sbjct: 1126 LSETVSGPVHL--PDMVDDYGSVDTLKYKKGDIVRVSIVD-------------------- 1163

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 780
               +D  +  + LS + S I S+  LP      S  + +    +V G+V N+ + G FV 
Sbjct: 1164 ---VDPSNKRIRLSMRPSRIMSST-LPVADKEISKITQLATGDIVRGFVKNVADKGLFVL 1219

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              G++T F   S   D    +   ++ + Q V+  I+ +++ T ++ LSLK S       
Sbjct: 1220 LGGQVTAFVKISNLSDRFLKEWKDSFQIDQLVKGRIISLDAATSQLELSLKSSVVDEDYT 1279

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
              +  + + E                        G ++ G V +  +FG  +  +  ++V
Sbjct: 1280 PPLGYNDIKE------------------------GQIVTGVVRKVEEFGAFILVDNSANV 1315

Query: 901  YGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVFID 944
             G     Q+A   V       + G  ++A +L+V  ++R +   LK  F +
Sbjct: 1316 SGLCHRSQMADNAVKDATKLYKEGDKVKARVLEVDVSKRRISFGLKPSFFE 1366



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 14/222 (6%)

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD--------VKPGMVVKGKVI 507
            KYK+G  VRV I+            ++ S         +D        +  G +V+G V 
Sbjct: 1150 KYKKGDIVRVSIVDVDPSNKRIRLSMRPSRIMSSTLPVADKEISKITQLATGDIVRGFVK 1209

Query: 508  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTH 565
             V   G  V   G V A   + ++S+  + +    F++   +  R+  L   + ++ ++ 
Sbjct: 1210 NVADKGLFVLLGGQVTAFVKISNLSDRFLKEWKDSFQIDQLVKGRIISLDAATSQLELSL 1269

Query: 566  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAPRSELGLDPG 623
            K ++V         Y +  +  I  G + K+E+ G F+   N   V G   RS++  +  
Sbjct: 1270 KSSVVDEDYTPPLGYNDIKEGQIVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNAV 1329

Query: 624  CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
             + + +Y  G  VK R++    + RRI  SF +KP+   ++D
Sbjct: 1330 KDATKLYKEGDKVKARVLEVDVSKRRI--SFGLKPSFFEDED 1369



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 28/272 (10%)

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            ++  +IT++   ++ +K      G +H+ ++ DD  +V + L   +K G  V   I+   
Sbjct: 1109 ILPGKITKVNERQVLVKLSETVSGPVHLPDMVDDYGSV-DTL--KYKKGDIVRVSIV--D 1163

Query: 1126 NKPDMKKSFLWELSIKPSMLTVS--EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
              P  K+     LS++PS +  S   +  K + +   ++ G  V G+V  V ++   + +
Sbjct: 1164 VDPSNKR---IRLSMRPSRIMSSTLPVADKEISKITQLATGDIVRGFVKNVADKGLFVLL 1220

Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
               + A  F+  S      L+E++  F I + V G ++S++     L L L+     + D
Sbjct: 1221 GGQVTA--FVKISNLSDRFLKEWKDSFQIDQLVKGRIISLDAATSQLELSLK---SSVVD 1275

Query: 1244 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
            +  D +       I EG IV G + K+      ++V    ++ G  H +++ +  V D  
Sbjct: 1276 E--DYTPPLGYNDIKEGQIVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNAVKDAT 1333

Query: 1304 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
              Y EG             VK +VLE+  + R
Sbjct: 1334 KLYKEGDK-----------VKARVLEVDVSKR 1354


>gi|409051813|gb|EKM61289.1| hypothetical protein PHACADRAFT_168722 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 1480

 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 238/918 (25%), Positives = 401/918 (43%), Gaps = 116/918 (12%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           MAA ++++   S+   PK  K +K   ++ K+Q      AQ  +    ++V  FPRGGG 
Sbjct: 1   MAAGTKRANDDST--APKAKK-TKVDHRSRKRQSLAEKSAQPASNTLAEEVD-FPRGGGT 56

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
           S T  E   I AE  A  EA E  L K+N  K    E++ +E    +  +  DG    L 
Sbjct: 57  SFTPIEVKAIRAE--AVKEANEE-LFKENAVKASHREKRKSEPKKKVKKITADGKPDTLV 113

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-------LARAADALDPILDN 173
           R  + +  K I  GMK++G V  V    L++ LP  L          ++    L+ + D 
Sbjct: 114 RVEH-LNYKRIIVGMKIFGQVMSVEPLALIVSLPNQLLAHIPITNITSQLTSLLESMDDE 172

Query: 174 EIEANEDNL-------------LPTIFHVGQLVSCIVLQLDD-------------DKKEI 207
           E E   D               L  IF  GQ V  +V  +               D+ + 
Sbjct: 173 EPEDVSDESDEEGPSMRRQVPELSEIFRPGQYVRAVVTAVHTAGSTDTVGFSRTRDESQK 232

Query: 208 GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP----- 262
             R++ LSL    + +G++   V+ G   +A VKS+EDHGYIL  G+    GFL      
Sbjct: 233 ASRRVELSLFPDKVNEGVAKADVKAGFACSAAVKSVEDHGYILDMGISDILGFLTFKDAQ 292

Query: 263 RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPG 322
           R+ + E   + +  G LL   V  +    +   +S  P+ V      ++   +   +VPG
Sbjct: 293 RSRVGE---MRLSIGHLLDVCVTKLSSNGRTCNVSISPEFVRSTSLTEVSNTT--SVVPG 347

Query: 323 MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VD 381
            +VS  + S+   G+ L  L ++ GT+D FHL    P  + + ++   +KV ARIL+ + 
Sbjct: 348 SLVSALITSVQPTGLNLQVLGFYNGTIDQFHL----PPGDVEENFKVGQKVKARILYDIA 403

Query: 382 P-TSRAVGLTLNPYLLHNRAPPSHVK-------------VGDIYDQSKVVRVDRGLGLLL 427
           P T     L+L  +++        V              +G   D  KV+RV+   GL++
Sbjct: 404 PSTPSRFALSLADHVVSMTDKSVDVSEDAKQTSLHEAFTIGVPVDPMKVIRVEPERGLIV 463

Query: 428 DIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKAS 484
           ++  TP +   +V IS V++E V  L      +K G+  R R+ G+   +GL    +K S
Sbjct: 464 EV--TP-TVEGFVHISQVSDEHVPMLSASSGPWKVGTMHRARVTGYHPFDGLLQLSMKPS 520

Query: 485 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 544
             E       +VK G V+KG V  +      V   G V  +    H ++  +  P K+FK
Sbjct: 521 VLEQKFLQVGEVKVGEVIKGTVKKLTDSALFVSISGNVDGVIWPNHYADIHLKHPQKRFK 580

Query: 545 VGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
            G  +  R+L V  + KR+ +T KKTL+ S L I++S  +  + L+TH  + K+ +    
Sbjct: 581 PGGSIKCRILVVDPERKRVVLTAKKTLIDSSLPIVASLDDVKEGLVTHAVVFKVSEKSLQ 640

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS-------IPASRRINLSFM 655
           V FYN ++   P  E         S+ + +G+VV+ RI+S        + + R+ + +F 
Sbjct: 641 VEFYNNLKAIVPIREASETTISSLSAAFPLGKVVQVRIISCNAETGRIVSSIRQASANFK 700

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-M 714
              T + +   V++G  V GVV  +     +V  +     +  +   +LA+    A   +
Sbjct: 701 AAITAIQD---VEIGHSVEGVVSEIQKEKAIV-TLKPTQVRALLSLNNLANRRGIAVAQL 756

Query: 715 KSVIKPGYEFDQLLVL--DNESSNLLLSAKYS-----LINSAQQLPSDASHIHPNSVVHG 767
           +S +K G +   L+V   + E   +L++ K       L  SA  L S    +    +V G
Sbjct: 757 RSSLKVGDKLMDLVVTSRNPEKGFVLVATKPKEKEEVLQKSALILES----VQIGQIVGG 812

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS-------VRSNILDVN 820
            V   I  G  V+   R++G             D+S  Y  G          ++ ++ ++
Sbjct: 813 RVIRHIRAGALVKLTSRISGIL--------HPTDVSDDYESGTPFPPVDTVFKAAVIGID 864

Query: 821 SETGRITLSLKQSCCSST 838
           ++   +TLS ++S  + +
Sbjct: 865 TDKRTLTLSTRRSVMNPS 882



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 175/762 (22%), Positives = 322/762 (42%), Gaps = 108/762 (14%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            S+ + + P S+V   + ++  TG  ++ LG   G   +     G   D+ + + VGQ V+
Sbjct: 339  SNTTSVVPGSLVSALITSVQPTGLNLQVLGFYNGTIDQFHLPPG---DVEENFKVGQKVK 395

Query: 814  SNIL-DVNSET-GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
            + IL D+   T  R  LSL     S TD S       ++      Q+S H        E 
Sbjct: 396  ARILYDIAPSTPSRFALSLADHVVSMTDKS-------VDVSEDAKQTSLH--------EA 440

Query: 872  FIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITHHQLAGATV----------ESGSV 919
            F IG  ++    +    + G++V  E    V GF+   Q++   V          + G++
Sbjct: 441  FTIGVPVDPMKVIRVEPERGLIV--EVTPTVEGFVHISQVSDEHVPMLSASSGPWKVGTM 498

Query: 920  IQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
             +A +      + L+ LS+K +V   +F +                  ++ V + +   V
Sbjct: 499  HRARVTGYHPFDGLLQLSMKPSVLEQKFLQVG----------------EVKVGEVIKGTV 542

Query: 979  EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 1038
            + + ++ L +S+      + + +       K PQK+F  G S+   ++ +       R  
Sbjct: 543  KKLTDSALFVSISGNVDGVIWPNHYADIHLKHPQKRFKPGGSIKCRILVVDPE----RKR 598

Query: 1039 LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
            ++L A      SS            G +  A + ++    L+++F       + I E ++
Sbjct: 599  VVLTAKKTLIDSSLPIVASLDDVKEGLVTHAVVFKVSEKSLQVEFYNNLKAIVPIREASE 658

Query: 1099 DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLLF 1156
                 + +L + F +G+ V  RII+ + +     S + + S   K ++  +         
Sbjct: 659  ---TTISSLSAAFPLGKVVQVRIISCNAETGRIVSSIRQASANFKAAITAIQ-------- 707

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGK 1214
               DV IG  V G V ++  E A++T+       L  L++      +   Q R    +G 
Sbjct: 708  ---DVEIGHSVEGVVSEIQKEKAIVTLKPTQVRALLSLNNLANRRGIAVAQLRSSLKVGD 764

Query: 1215 AVTGHVL-SINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             +   V+ S N EK  + +  +P + + +  K+  I        +  G IVGGR+ + + 
Sbjct: 765  KLMDLVVTSRNPEKGFVLVATKPKEKEEVLQKSALILES-----VQIGQIVGGRVIRHIR 819

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ-FDPLSGYDEGQFVKCKVLEIS 1331
               G +V++   + G +H T+     VSD    Y+ G  F P+         K  V+ I 
Sbjct: 820  A--GALVKLTSRISGILHPTD-----VSD---DYESGTPFPPVD-----TVFKAAVIGID 864

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1391
               R    + LS R S+         + S  V      +  + D+     V+G++K+V  
Sbjct: 865  TDKRT---LTLSTRRSV--------MNPSVHVPVADPVINDVSDMKAGSTVRGFIKSVAE 913

Query: 1392 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
             G F+ L R +DA+V +  L D +V+  +  F   +LV GR+LSV    K+VE++ ++SD
Sbjct: 914  HGLFVTLGRNIDARVQIKELFDDFVKDWKSRFQANQLVKGRILSVNVEKKQVEMSFRSSD 973

Query: 1452 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            S  ++Q  I  LS+L  G  V   +K++  YGLF+ +E + +
Sbjct: 974  SSRSAQLTI-KLSDLSEGQKVDAVVKKIADYGLFLEVEGSKV 1014


>gi|169844731|ref|XP_001829086.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea
           okayama7#130]
 gi|116509826|gb|EAU92721.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea
           okayama7#130]
          Length = 1462

 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 229/888 (25%), Positives = 388/888 (43%), Gaps = 91/888 (10%)

Query: 8   SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRER 67
           SQK++ +D    +KA K + ++S K   +   AQ  +   + D   FPRGGG SLT  E 
Sbjct: 3   SQKRALEDSSTSHKAKKRKNEDSVKPKENLQPAQPTSSLLNADEIDFPRGGGSSLTALEV 62

Query: 68  DEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKIT 127
             I AE   E +A       K  KK+KKT  K+            +G   K+      + 
Sbjct: 63  KTIRAEAAKEADAELFKESAKPSKKRKKTTEKSTSK---------EGKKDKI--RIEHLN 111

Query: 128 LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG--------------LARAADALDPIL-- 171
            K ++ GMK+ G +  +    L++ LP  L G              L R  +  D     
Sbjct: 112 YKRLNPGMKIMGQIVGILPLTLLVSLPNQLLGHIPITNISREYTQQLERMDEDEDMEDSD 171

Query: 172 -----DNEIEANEDNLLPTIFHVGQLVSCIVLQ-----------LDDDKKEIGK--RKIW 213
                D   +   D  L  +F +GQ V  +V             L   + E+ K  +++ 
Sbjct: 172 SDGEEDRPRQTTPD--LGQMFAIGQYVRAVVTATFQGGASDPSGLYRSRDELAKLCKRVE 229

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
           LSL   L+ +G+ ++ ++ G  LTA VKS+EDHGYIL  G+P+  GFL   +  E  G  
Sbjct: 230 LSLSPDLVNEGVRVDDLKSGFTLTAAVKSVEDHGYILDLGIPNADGFLSFKDAKEVEGSS 289

Query: 274 -VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
            +  G L    V  +   ++   +++ P T +     ++   S+  ++PG +V   V  +
Sbjct: 290 KLAVGQLCNVTVSKLAANKRTCTVTASPSTFTSSAITEVS--SVTSIIPGSLVQALVTDV 347

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTSRAVGL 389
             +GV+L  L +F G+VD  HL+ + P           +KV  R+L+    +P   AV L
Sbjct: 348 GADGVILQILGFFEGSVDRIHLRRSGPP-------KIGQKVKGRVLYQYSTEPPRLAVAL 400

Query: 390 T-----LNPYLLHNRAPPSHVKV------GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
                 L    L +  P S  ++      G I D  KVV+V+   GL L++         
Sbjct: 401 AEHIVGLANVQLSDENPASTQRLEEAYPFGHILDSVKVVKVEPERGLFLEVAP---GQEG 457

Query: 439 YVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDV 496
           +  IS ++++ +  +     +K  +  R R+ G+   +GL    LK S FE       D 
Sbjct: 458 FAHISHISDDHLPSVSPTGPWKVNTLHRARVTGYHSFDGLLQLSLKPSIFEQKFLQLEDF 517

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           KPG +VKG + +V      V   G +  +    H ++  +  P ++FK G  +  +VL V
Sbjct: 518 KPGEIVKGTIKSVSDSAIFVSLSGNIDGVIWPNHFADIRLKHPTRRFKPGNPIKCKVLVV 577

Query: 557 KS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            S  KRI++T KKTL++S L I+S+  +     +THG I K+ +    V F+N ++    
Sbjct: 578 DSDRKRISLTAKKTLLESDLPIVSNVGDVKVGTVTHGVIFKVLEKHLMVEFFNNLKASVS 637

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGS 671
             E       + +  + VG+ V+ RI S      RI  S     +  T V + ++V+ G 
Sbjct: 638 AKEASESHTVKLADAFSVGRAVRVRIQSVDREQGRITASIRQAAVSQTPVVDVNVVEEGE 697

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLV 729
            V G +  V    +V+  +     +  +  + LA H  +  A V K ++KPG   + L+V
Sbjct: 698 AVGGTIAEVHAEHIVI-TLQPTKVRALLTVKSLASHRNISPAQVHK-LVKPGDSIEDLIV 755

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
              N    +++        +A  L    S   +     V G V    + G  V+   +++
Sbjct: 756 ATKNPEKGIVIVTTKPKPKAAAPLKGQVSLETVAVGQQVGGRVLRHTKQGALVKITSKIS 815

Query: 787 GFAPRSKAVDGQRADLSKTY-YVGQSVRSNILDVNSETGRITLSLKQS 833
           G    +   D    D+ K +  V   + ++++ V+ +  ++TLS ++S
Sbjct: 816 GILHPTDTADD--YDVDKAFPPVDSLITASVVRVDKDKQQLTLSTRES 861



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 157/361 (43%), Gaps = 31/361 (8%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           PG +V+  V  V + G I+Q  G  +      H+      K G+K K     V      +
Sbjct: 336 PGSLVQALVTDVGADGVILQILGFFEGSVDRIHLRRSGPPKIGQKVK---GRVLYQYSTE 392

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW----------ITKIE-KHGCFVRFY 606
             R+ V   + +V      LS    A+ + +   +          + K+E + G F+   
Sbjct: 393 PPRLAVALAEHIVGLANVQLSDENPASTQRLEEAYPFGHILDSVKVVKVEPERGLFLEVA 452

Query: 607 NGVQGFAPRSELGLD--PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
            G +GFA  S +  D  P   P+  + V  + + R+         + LS  +KP+ + E 
Sbjct: 453 PGQEGFAHISHISDDHLPSVSPTGPWKVNTLHRARVTGYHSFDGLLQLS--LKPS-IFEQ 509

Query: 665 DLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
             ++L     G +V G +  V+ +A+  +V   G   G I   H AD  L+H T      
Sbjct: 510 KFLQLEDFKPGEIVKGTIKSVSDSAI--FVSLSGNIDGVIWPNHFADIRLKHPTRR---F 564

Query: 719 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
           KPG     ++LV+D++   + L+AK +L+ S   + S+   +   +V HG +  ++E   
Sbjct: 565 KPGNPIKCKVLVVDSDRKRISLTAKKTLLESDLPIVSNVGDVKVGTVTHGVIFKVLEKHL 624

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V F   L       +A +     L+  + VG++VR  I  V+ E GRIT S++Q+  S 
Sbjct: 625 MVEFFNNLKASVSAKEASESHTVKLADAFSVGRAVRVRIQSVDREQGRITASIRQAAVSQ 684

Query: 838 T 838
           T
Sbjct: 685 T 685



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 3/131 (2%)

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
            D   + + ++ DL     V+G+VKN+ ++G F+ + R +DA+V +  L D YV+  +  F
Sbjct: 870  DVTDREISELSDLQVGDTVRGFVKNIANQGLFVTIGRGIDARVQIRELFDEYVKDWKPRF 929

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
               +LV GRVLS++  + +VE+T K+ D     +S  + +     G  + G IKR+E YG
Sbjct: 930  KERQLVKGRVLSIDVDNNQVELTFKSGDLSREKKSLKDTVKE---GQKISGVIKRIEHYG 986

Query: 1484 LFITIENTNLV 1494
            LFI I+ T L 
Sbjct: 987  LFIEIKGTKLT 997



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 122/560 (21%), Positives = 225/560 (40%), Gaps = 62/560 (11%)

Query: 312  KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
            K + ++   PG +V   ++S+ ++ + +S     +G +D     N F     K+   + K
Sbjct: 510  KFLQLEDFKPGEIVKGTIKSVSDSAIFVSL----SGNIDGVIWPNHFADIRLKHPTRRFK 565

Query: 372  KVN---ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL----- 423
              N    ++L VD   + + LT    LL +  P     VGD+    KV  V  G+     
Sbjct: 566  PGNPIKCKVLVVDSDRKRISLTAKKTLLESDLPIVS-NVGDV----KVGTVTHGVIFKVL 620

Query: 424  --GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG-I 480
               L+++  +   +  A V+  + +E    KL   +  G  VRVRI      +G  T  I
Sbjct: 621  EKHLMVEFFN---NLKASVSAKEASESHTVKLADAFSVGRAVRVRIQSVDREQGRITASI 677

Query: 481  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKP 539
             +A+  +  V   + V+ G  V G +  V +   ++   P  V+AL  +  ++    + P
Sbjct: 678  RQAAVSQTPVVDVNVVEEGEAVGGTIAEVHAEHIVITLQPTKVRALLTVKSLASHRNISP 737

Query: 540  G---KKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
                K  K G  +   ++  K+      I  T  K    + L    S           G 
Sbjct: 738  AQVHKLVKPGDSIEDLIVATKNPEKGIVIVTTKPKPKAAAPLKGQVSLETVAVGQQVGGR 797

Query: 593  ITKIEKHGCFVRFYNGVQGFAPRSELG----LDPGCEPSSMYHVGQVV-----KCRIMSS 643
            + +  K G  V+  + + G    ++      +D    P        VV     K ++  S
Sbjct: 798  VLRHTKQGALVKITSKISGILHPTDTADDYDVDKAFPPVDSLITASVVRVDKDKQQLTLS 857

Query: 644  IPASRRI-NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
               SR + N S  +    +SE   +++G  V G V  +    + V  I +G        E
Sbjct: 858  TRESRLLPNKSHDVTDREISELSDLQVGDTVRGFVKNIANQGLFV-TIGRGIDARVQIRE 916

Query: 703  HLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
               ++++         KP ++  QL     L +D +++ + L+ K   ++  ++   D  
Sbjct: 917  LFDEYVKD-------WKPRFKERQLVKGRVLSIDVDNNQVELTFKSGDLSREKKSLKDT- 968

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLS---KTYYVGQSVR 813
             +     + G +  I   G F+   G +LTG   +++  D   AD++   + + VG  V+
Sbjct: 969  -VKEGQKISGVIKRIEHYGLFIEIKGTKLTGLCHKTQLSDNPDADVAEALRQFRVGDLVK 1027

Query: 814  SNILDVNSETGRITLSLKQS 833
            + +  + SE GRI+LSLK S
Sbjct: 1028 AAV--IASEKGRISLSLKPS 1045


>gi|392571061|gb|EIW64233.1| hypothetical protein TRAVEDRAFT_138819 [Trametes versicolor
           FP-101664 SS1]
          Length = 1486

 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 233/857 (27%), Positives = 380/857 (44%), Gaps = 103/857 (12%)

Query: 49  DDVPVFPRGGGHSLTQRE----RDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETV 104
           DD+  FPRGGG SLT  E    R E   E D+E  A E       K+++K      ++T 
Sbjct: 47  DDID-FPRGGGTSLTPLEVKTLRAEAAKEADSELFA-ESAKEATTKRRRKSEAGTKSKTT 104

Query: 105 DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LA 161
           D  G         K       +  K ++ GMK+ G V  V    L++ LP  L     + 
Sbjct: 105 DKDGK--------KNVIRIEHLNYKRVAVGMKILGQVVSVEPLALIVSLPNQLFAHVPIT 156

Query: 162 RAADALDPILDNEIEA-NEDN--------LLPTIFHV---GQLVSCIV------------ 197
           + +  L  IL++E +A N D+         +P +F +   GQ V  +V            
Sbjct: 157 QISSQLTHILESEDDAENSDDEEEEASASRVPDLFEIFQPGQYVRAVVSAVHQPGSTDAT 216

Query: 198 -LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
            L    D+ +   R++ LSL    + +G++   +  G  L+A VKS+EDHGYIL  G+P 
Sbjct: 217 GLGRARDEVQKASRRVELSLVPEKVNEGVAKADLLAGFALSASVKSVEDHGYILDLGIPE 276

Query: 257 FTGFLPRNNLAEN--SGIDVK--PGLLLQGVVRSID---RTRKVVYLSSDPDTVSKCVTK 309
            +GFL     A+   SG + K   G LL  +V  +    RT  V   S  P T       
Sbjct: 277 VSGFLSFKAAAQKGPSGAEKKFHVGRLLDVIVTKLSDNGRTCNVSVDSYAPKTAPLTEVT 336

Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
            +K +     VPG +V + V ++  +G++L  L +F GTVD FHL+    + + +++Y  
Sbjct: 337 SVKSV-----VPGALVQSLVTAVQPDGLILQVLGFFDGTVDQFHLR----SGDTEDNYKI 387

Query: 370 HKKVNARILF-VDP-TSRAVGLTLNPYLLH---------------NRAPPSHVKVGDIYD 412
            +KV AR+L+ + P T     L+L  +++                  A P    VG   D
Sbjct: 388 GQKVKARVLYDISPSTPPRFALSLADHVVKYSAKSAASGSAATDLREAYP----VGTTLD 443

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILG 469
             KV R++   GL +++ S       +V IS V++E V  L      +K G+  R R+ G
Sbjct: 444 AVKVTRIESERGLTVEVGS---GVAGFVHISQVSDEHVPTLSTTSGAWKVGTVHRARVTG 500

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
           +  L+GL    LK S         +DV+ G ++KG V  +      V   G V  +    
Sbjct: 501 YFPLDGLLQLSLKPSILAQKFLQVADVQVGELIKGTVKKLTDTALFVSISGNVDGVIWPN 560

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRL 587
           H ++  +  P K+FK G  +  RVL V S  KRI +T KKTLV+S L I+S  ++    +
Sbjct: 561 HYADIVLKHPQKRFKPGGSIKCRVLVVDSERKRIALTAKKTLVESTLPIVSQLSDVRVGV 620

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +TH  I KI +    V FYN ++   P  E         S+ + +G+ V+ R+++    +
Sbjct: 621 VTHAVIFKISEKSLQVEFYNNLKASVPAREASETTLSSLSAAFAIGKPVQVRLIAVDAET 680

Query: 648 RRINLSFMMKP----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            RI  S         + +++   V +G +V GVV  +  +  VV  +        +   +
Sbjct: 681 GRITASIRQAAPNFKSAITDISGVDIGDIVEGVVSDIRKDKAVV-TLQPTQVTALLSLNN 739

Query: 704 LADHLEHATV-MKSVIKPGYEFDQLLVL--DNESSNLLLSAK---YSLINSAQQLPSDAS 757
           LA+  E +   ++S +K G +   L+V   + E   +L+++K      I     L  D  
Sbjct: 740 LANRREVSVAQLRSALKVGEKLQDLVVTSRNPEKGFVLVASKPKEKEAILQKNHLSLDT- 798

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNI 816
            +    +V G V      G  ++    + G    + AVD   +   K +  V   +++ +
Sbjct: 799 -VQAGQLVGGRVLRHNRYGALIKLTNSIMGVLHPTDAVDDYES--GKPFPGVDSVLKAVV 855

Query: 817 LDVNSETGRITLSLKQS 833
           L V+ E  ++ LS + S
Sbjct: 856 LSVDKERRQLMLSTRMS 872



 Score =  110 bits (275), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 174/753 (23%), Positives = 316/753 (41%), Gaps = 106/753 (14%)

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV 819
            P ++V   V  +   G  ++ LG   G   +     G   D    Y +GQ V++ +L D+
Sbjct: 343  PGALVQSLVTAVQPDGLILQVLGFFDGTVDQFHLRSG---DTEDNYKIGQKVKARVLYDI 399

Query: 820  NSETG-RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
            +  T  R  LSL                    +  A   +S    ++L+  E + +G+ +
Sbjct: 400  SPSTPPRFALSLADHVV---------------KYSAKSAASGSAATDLR--EAYPVGTTL 442

Query: 879  EG-KVHE-SNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILD 926
            +  KV    ++ G+ V  E  S V GF+   Q++   V +          G+V +A +  
Sbjct: 443  DAVKVTRIESERGLTV--EVGSGVAGFVHISQVSDEHVPTLSTTSGAWKVGTVHRARVTG 500

Query: 927  VAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENY 985
                + L+ LSLK ++   +F +                  D+ V + +   V+ + +  
Sbjct: 501  YFPLDGLLQLSLKPSILAQKFLQV----------------ADVQVGELIKGTVKKLTDTA 544

Query: 986  LVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045
            L +S+      + + +       K PQK+F  G S+   V+ + S     R  + L A  
Sbjct: 545  LFVSISGNVDGVIWPNHYADIVLKHPQKRFKPGGSIKCRVLVVDSE----RKRIALTAKK 600

Query: 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE 1105
                S+     + S   VG +  A I +I    L+++F       +   E ++     + 
Sbjct: 601  TLVESTLPIVSQLSDVRVGVVTHAVIFKISEKSLQVEFYNNLKASVPAREASE---TTLS 657

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1165
            +L + F IG+ V  R+IA   +            I  S+   +      + +   V IG 
Sbjct: 658  SLSAAFAIGKPVQVRLIAVDAETG---------RITASIRQAAPNFKSAITDISGVDIGD 708

Query: 1166 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAVTGHVL-S 1222
             V G V  +  + A++T+       L  L++     E+   Q R    +G+ +   V+ S
Sbjct: 709  IVEGVVSDIRKDKAVVTLQPTQVTALLSLNNLANRREVSVAQLRSALKVGEKLQDLVVTS 768

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
             N EK  + +  +P +     +   +S D +Q     G +VGGR+  +     G ++++ 
Sbjct: 769  RNPEKGFVLVASKPKEKEAILQKNHLSLDTVQA----GQLVGGRV--LRHNRYGALIKLT 822

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
              + G +H T        D +  Y+ G+  P  G D    +K  VL + +  R       
Sbjct: 823  NSIMGVLHPT--------DAVDDYESGK--PFPGVD--SVLKAVVLSVDKERRQL----- 865

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
                    M ST  S L    D P   + +  +  L     V+G++K++   G F+ L R
Sbjct: 866  --------MLSTRMSRLFPSQDKPIVDREITSLSQLKVGDKVRGFIKSIAEHGLFVTLGR 917

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1460
             +DA+V +  L D +V+  +  F + +LV GR+LSV    K++E++ ++ D +   QS++
Sbjct: 918  DIDARVQIKELFDDFVKDWKSRFTVNQLVNGRILSVNVEKKQLELSFRSGDLKRDGQSQL 977

Query: 1461 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             +LS+L  G  + G++K+VE YGLFI IE + L
Sbjct: 978  -SLSDLSEGQKIDGRVKKVEDYGLFIEIEGSKL 1009



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 124/300 (41%), Gaps = 48/300 (16%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V  GQ V G V + +   AL+ ++  +   L   D+  +    + F     + KAV   V
Sbjct: 799  VQAGQLVGGRVLRHNRYGALIKLTNSIMGVLHPTDAVDDYESGKPFPGVDSVLKAV---V 855

Query: 1221 LSINKEKKLLRLVLR-----PFQDG-ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
            LS++KE++ L L  R     P QD  I D+ +        + +  GD V G I  I    
Sbjct: 856  LSVDKERRQLMLSTRMSRLFPSQDKPIVDREI-----TSLSQLKVGDKVRGFIKSIAEH- 909

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
             GL V +G  +  RV   EL           +D+   D  S +   Q V  ++L ++   
Sbjct: 910  -GLFVTLGRDIDARVQIKEL-----------FDDFVKDWKSRFTVNQLVNGRILSVNVEK 957

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
            +    +ELS RS           DL  D    G+    + DLS    + G VK V   G 
Sbjct: 958  K---QLELSFRSG----------DLKRD----GQSQLSLSDLSEGQKIDGRVKKVEDYGL 1000

Query: 1395 FIMLS-RKLDA---KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            FI +   KL     K  LS+  DG V    + F +G  V   +LSV+   +RV   LK S
Sbjct: 1001 FIEIEGSKLSGLCHKSELSDNKDGDVTLALRSFRVGDKVKAVILSVDLEKRRVSFGLKPS 1060



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 100/472 (21%), Positives = 190/472 (40%), Gaps = 44/472 (9%)

Query: 212 IWLSLRLSLL-YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-- 268
           + LSL+ S+L  K L +  VQ G ++   VK + D    +     +  G +  N+ A+  
Sbjct: 508 LQLSLKPSILAQKFLQVADVQVGELIKGTVKKLTDTALFVSIS-GNVDGVIWPNHYADIV 566

Query: 269 --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC--VTKDLKGISIDLLVPGMM 324
             +     KPG  ++  V  +D  RK + L++    V     +   L  + +     G++
Sbjct: 567 LKHPQKRFKPGGSIKCRVLVVDSERKRIALTAKKTLVESTLPIVSQLSDVRV-----GVV 621

Query: 325 VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
               +  I E  + + F      +V       T   ++    +   K V  R++ VD  +
Sbjct: 622 THAVIFKISEKSLQVEFYNNLKASVPAREASET-TLSSLSAAFAIGKPVQVRLIAVDAET 680

Query: 385 RAVGLTLN---PYLLHNRAPPSHVKVGDIYDQS-KVVRVDRGLGLLLDIPSTPVSTPAYV 440
             +  ++    P         S V +GDI +     +R D+ +  L      P    A +
Sbjct: 681 GRITASIRQAAPNFKSAITDISGVDIGDIVEGVVSDIRKDKAVVTL-----QPTQVTALL 735

Query: 441 TISDVA---EEEVRKLEKKYKEGSCVRVRILGFRHLE-GLATGILKASAFEGLV----FT 492
           +++++A   E  V +L    K G  ++  ++  R+ E G      K    E ++     +
Sbjct: 736 SLNNLANRREVSVAQLRSALKVGEKLQDLVVTSRNPEKGFVLVASKPKEKEAILQKNHLS 795

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVKP---------GKK 542
              V+ G +V G+V+  + +GA+++    +   L P   + ++E  KP            
Sbjct: 796 LDTVQAGQLVGGRVLRHNRYGALIKLTNSIMGVLHPTDAVDDYESGKPFPGVDSVLKAVV 855

Query: 543 FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
             V  E    +L  +  R+  +  K +V  ++  LS   +  D++   G+I  I +HG F
Sbjct: 856 LSVDKERRQLMLSTRMSRLFPSQDKPIVDREITSLSQL-KVGDKV--RGFIKSIAEHGLF 912

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           V     +       EL  D   +  S + V Q+V  RI+S     +++ LSF
Sbjct: 913 VTLGRDIDARVQIKELFDDFVKDWKSRFTVNQLVNGRILSVNVEKKQLELSF 964


>gi|298708904|emb|CBJ30860.1| rRNA biogenesis protein rrp5 [Ectocarpus siliculosus]
          Length = 2344

 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 156/482 (32%), Positives = 226/482 (46%), Gaps = 71/482 (14%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
           AYV IS +++E V  +EK YK G  VR R+ G   +EG A   L+ S     V  + D+K
Sbjct: 511 AYVHISRISDERVEHVEKSYKPGQKVRCRVTGSSLVEGWAAASLRPSVLSAAVLRYQDLK 570

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           PG +V+G+V AV++FG +V+   GV+AL P  H+ +  +  P  +FKVGA +  RVL V 
Sbjct: 571 PGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVLTVD 630

Query: 558 --SKRITVTHKKTLVKSKLAILSSYAEATDRLITH--GWITKIEKHGCFVRFYNGVQGFA 613
             S + T+T K+++VK K  ++S+Y EA +R  T   G++TK+   G  V FY  V G  
Sbjct: 631 AGSSKSTLTLKRSMVKDKREVISTYTEAKEREGTACTGFVTKVAPFGLHVSFYGNVFGLL 690

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFM-----MKPTRVSED 664
           P   L      +PS  + VGQVV C + S    + P    ++L        M  T  +E+
Sbjct: 691 PSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVTTYPPKLALSLDVAGKTEEMGGTGAAEE 750

Query: 665 D-----------LVKLGSLVSGVVDV-----------------VTPN------------- 683
           D               G  VSGVV                    TP              
Sbjct: 751 DESDGEGGAASCPFSPGDTVSGVVSANQDKEGKVVVDLNLPADTTPEDTSTKKKKKKSQA 810

Query: 684 -AVVVYVIAKGYSKGTIPTEHLADHLE-HATVMKSVIKPGYEFDQLLVLDNESSN----- 736
               V   A G+    +P  HL DH       + + + PG   DQLLVL+ +        
Sbjct: 811 KQAAVATTAPGF----LPHPHLGDHASVCGQTLAAQLTPGTVIDQLLVLEVDKMGVPMVT 866

Query: 737 ---LLLSA-KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
              LLLSA   S  +    +P  AS++ P  ++ GYVC +   G FVRFLGR T   PRS
Sbjct: 867 LKPLLLSAVARSGEDKEAFVPGAASNVSPGDLIAGYVCRVESFGVFVRFLGRFTALCPRS 926

Query: 793 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
            A D    D S  +  G S R  +  V+ +TGR+ ++L ++   ++ A +++   LL E 
Sbjct: 927 MAADRMVEDPSGMFEEGDSARCVVQRVDEDTGRVVVTLDRTTVPTSPALYLRS--LLSET 984

Query: 853 IA 854
            A
Sbjct: 985 FA 986



 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 184/366 (50%), Gaps = 46/366 (12%)

Query: 98  RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
           +K   T  ++GS      SG+ PR    ++ K ++ G    GVV ++NE D+V+ LP  L
Sbjct: 103 KKRGSTASEVGSGMLVEHSGRAPRL-EMVSFKKLNKGTLAMGVVFKINEHDMVVSLPSSL 161

Query: 158 RGLARAADALDPILDNEIEANE-------------------DNLLPTIFHVGQLVSCIVL 198
            G+ R  +  D        A                     +  L  +F  GQ+V C ++
Sbjct: 162 TGVVRRQEVSDYFHQKAASAKNTGSNRAGGRGRYFDESHAGEKPLTHLFREGQVVRCAII 221

Query: 199 QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
            L    KE   R I LSLR S++ KGLSL  + +G  +   V S EDHGY++  GL   T
Sbjct: 222 SL---AKEAKGRHIELSLRASVVNKGLSLSQLTKGSGVYGSVASAEDHGYVVTLGLDGVT 278

Query: 259 GFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL 318
            FLP+ +  ++    ++PG  ++ V++++    + V L++DP  VS  VT   +G S DL
Sbjct: 279 AFLPKKDGPKDG---LEPGQPVEAVIQTVKAAARTVTLTADPSLVSSAVT---QGTSFDL 332

Query: 319 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN---------WKNDY 367
             L PGM+V   V S+L NG+++SFL YF G VD     N  P  +         W+  +
Sbjct: 333 RSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVD----HNNMPLVSGDGKDEPKGWRPLF 388

Query: 368 NQH-KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 426
               + V AR+L VD  ++A+ LTL P+L+  R P      G +  + +VVRVD  LGLL
Sbjct: 389 RPGPEPVRARVLLVDYVNKAIRLTLRPHLMEMRTPSGLPPTGALL-EGEVVRVDPALGLL 447

Query: 427 LDIPST 432
           L +PST
Sbjct: 448 LTVPST 453



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 184/453 (40%), Gaps = 88/453 (19%)

Query: 1108 FSNFKIGQTVTARII--AKSNKPDMKKSFLWE------------LSIKPSMLTVS----- 1148
               F +GQ +TAR++      + D K  F++             ++I  S L  +     
Sbjct: 1427 LEKFHVGQVLTARVLHFEDMTQKDPKSDFVFRLLELGLLDGDGTVTIDQSGLGEAEGEGE 1486

Query: 1149 ---EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL----DSAYEPS 1201
                + +   + EC    G+   G + +V     L+++S  ++  + +     D+     
Sbjct: 1487 EAVSVPAVPWWGECPPKAGEVHRGVITEVAEHGLLVSLSNSVRGLVPLAKLSSDATVTAK 1546

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV---------DISNDN 1252
               EF  R  +G  V    +   + + +L LV  P +D + D  +         D+ +  
Sbjct: 1547 NFGEFFER-GMGLRVLVRRVEEERRRLILSLVGVPDRDTLPDSALPAMSPGFQADVKSKA 1605

Query: 1253 MQTFIHE----GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
             +    E    GD+V GR+   +       V +      R+    +  +CV++ LS  + 
Sbjct: 1606 ARNLTSESPDAGDVVEGRVDLTVKAWSPPCVMV------RLDGGCIGRVCVTE-LSEEEA 1658

Query: 1309 GQFDPLSGYDEGQFVKCKVL-----------EISRTVRGTFH-------------VELSL 1344
             + +P+    +G  VKC+VL             SR  R                 VELSL
Sbjct: 1659 WKDNPVGRIKDGARVKCRVLPPLPKRSTEAQSKSRRRRSGDGDEDDEEGDGYMGPVELSL 1718

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIE-DLSPNM--IVQGYVKNVTSKGCFIMLSRK 1401
            R      S               K  E I+ D +P +    + YV   +  GCF++L+  
Sbjct: 1719 RPCRVEASKN-------------KRKEAIKRDAAPKVGSTAKCYVVATSKSGCFVILNGG 1765

Query: 1402 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1461
            +  +VLL +LSD +V  P +EFP GKLVAG+VL+ E  + RV ++LK SD        + 
Sbjct: 1766 VSGRVLLKHLSDRFVSDPAQEFPAGKLVAGKVLAQEKETGRVSLSLKPSDVVGGEGGALT 1825

Query: 1462 NLSN-LHVGDIVIGQIKRVESYGLFITIENTNL 1493
              S  L  G  V G +  V+ +G+FI I ++ +
Sbjct: 1826 WSSEILKPGLKVKGTVDTVKDFGVFIQIHDSKV 1858



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 25/175 (14%)

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
            Y  GQ V+C+V   S  V G      SLR S+          LS  V        + +DL
Sbjct: 530  YKPGQKVRCRVTG-SSLVEG--WAAASLRPSV----------LSAAV-------LRYQDL 569

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
             P  +V+G V  V + G  + L   + A V  ++L D  V++P+  F +G  V GRVL+V
Sbjct: 570  KPGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVLTV 629

Query: 1437 EPLSKRVEVTLKTS---DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +  S +  +TLK S   D R    +     +    G    G + +V  +GL ++ 
Sbjct: 630  DAGSSKSTLTLKRSMVKDKREVISTYTE--AKEREGTACTGFVTKVAPFGLHVSF 682


>gi|336469521|gb|EGO57683.1| hypothetical protein NEUTE1DRAFT_122065 [Neurospora tetrasperma
           FGSC 2508]
 gi|350290834|gb|EGZ72048.1| nucleic acid-binding protein [Neurospora tetrasperma FGSC 2509]
          Length = 1774

 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 231/876 (26%), Positives = 384/876 (43%), Gaps = 81/876 (9%)

Query: 7   KSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRE 66
           KS    SK G K  K        S K    A  A   +    ++ P+FPRGG   LT  E
Sbjct: 32  KSNDAGSKAGAKTGKQGNKPAPKSDKPAPPAPTAPAKSTLLKEEEPMFPRGGASVLTPLE 91

Query: 67  RDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYAN 124
             +I   A+ DA FE          ++  K T +KA E             S   P   +
Sbjct: 92  YKQIQVQAKNDALFE----------EQSSKATAKKAGEKEGKQKKSKKRSKSDDTPAKPD 141

Query: 125 -------KITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------------RAA 164
                   +  K +  G  + G V  +N  D+ + LP  + G                A+
Sbjct: 142 ADAVKVESLNFKRLVKGSLVLGSVCAINSLDIAVALPNNIIGHVPITAISAPLTKRLEAS 201

Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSL 220
              D   ++E E + D  L ++F +GQ V   V+   D+         KR I LSL+ SL
Sbjct: 202 AGNDDAEESEDENDNDVDLESLFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSL 261

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPG 277
              G++ + V     + A + S+EDHGY++   +      GFL R  + ++   + ++PG
Sbjct: 262 ANTGMAEQDVVVNSTVMAAIASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPG 321

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            +L  +V + +   KVV LS+  +T+           +ID  +PG      V  +  +G+
Sbjct: 322 AVLLCIV-TKNAKGKVVQLSTLGETMGNVENVPSTATTIDTFLPGTAADVLVSEVSSHGI 380

Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
           +   +     T D+ H        + ++ Y    ++ AR++   PT++      +P L  
Sbjct: 381 VGKIMGSLDVTADLVHSGAGPDGIDLEDTYKVGSRLKARVICNFPTAK------HPKLGI 434

Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 456
           +  P S      I ++  V +V+  +GL +D+    VS   +V IS V + +V  L +  
Sbjct: 435 SALPHST-----IVEKCTVKQVEPEIGLYVDVGVEGVS--GFVHISRVKDGKVDALFENS 487

Query: 457 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSF 512
             YK GS    R++G+   +G+    L+ S  E       D+  G VV G V  + V++ 
Sbjct: 488 GPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVVNAA 547

Query: 513 GA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKK 567
           G    IV+   G+  L P  H ++  +  P KKF+ G ++  RVL     S++I +T KK
Sbjct: 548 GVGGLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKK 607

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           TLV S L  + SY +        G I  + +HG  V+FY  ++GF P SE+      +P 
Sbjct: 608 TLVNSDLPAIQSYEQIAVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPK 667

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPN 683
             + VGQ V   ++S  P + ++ +S         E  L    +++G +VS  V   T +
Sbjct: 668 EHFRVGQTVSIYVISFDPDAAKLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQKTDD 727

Query: 684 AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLL 738
            V V  +A    K  +P  HL D  +  +  +S +K         +L++L+ NE+  +++
Sbjct: 728 DVFVE-LADSSLKAILPVAHLTD--KSVSKTQSALKKIHVNQTLAELVILEKNEARRSII 784

Query: 739 LSAKYSLINSAQQ----LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
           LS K SL+ ++++       D + +     V GYV NI  T  FV+F G+LT   P+S  
Sbjct: 785 LSQKPSLVKASKEGKFLTTLDGARV--GDEVSGYVRNITATAVFVQFGGKLTALLPKSMI 842

Query: 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
              ++       +  QSV   I  VN+E  R+ +++
Sbjct: 843 PREEQDKPDFGMFKSQSVTVKITSVNTELNRLVVAI 878



 Score =  159 bits (401), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 224/932 (24%), Positives = 416/932 (44%), Gaps = 134/932 (14%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTR 660
            GV GF   S +    +D   E S  Y VG V   R++  ++      I+L  S + +P  
Sbjct: 465  GVSGFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFL 524

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
              ED  + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +
Sbjct: 525  RIED--IPVGAVVSGVVEKMVVNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---E 578

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNI 772
               + G +   ++L  D  S  + L+ K +L+NS   LP+  S+  I       G + N+
Sbjct: 579  KKFREGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQSYEQIAVGQQALGTIINV 636

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            ++ G  V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K 
Sbjct: 637  LQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKD 696

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                          F LE+++A+              +   IG V+  KV +  D  V V
Sbjct: 697  PSA-----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFV 731

Query: 893  SFEEHSDVYGFITHHQLAGATVE-----------SGSVIQAAILDVAKAERLVDLSLKTV 941
               + S +   +    L   +V            + ++ +  IL+  +A R + LS K  
Sbjct: 732  ELADSS-LKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPS 790

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYA 1000
             +   +E          +   E S   G  + + A    V+    L   LP+        
Sbjct: 791  LVKASKEGKFLTTLDGARVGDEVS---GYVRNITATAVFVQFGGKLTALLPK-------- 839

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA- 1055
            S+     Q  P       QSV   + ++  ++   RL++ +   +E     ET   K A 
Sbjct: 840  SMIPREEQDKPDFGMFKSQSVTVKITSV--NTELNRLVVAIPGAAEQVKKVETKGEKVAN 897

Query: 1056 ---KKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENL 1107
               +  ++ D   +G L +A I  +K  +L ++      GRI +++V D    +   +  
Sbjct: 898  PVDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDTKKP 957

Query: 1108 FSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEEC 1159
               F+  Q V  R++    A++++  P   +S   + ELS KPS +        L F+  
Sbjct: 958  LKKFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEPLSFD-- 1015

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G    G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   
Sbjct: 1016 NLKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVR 1075

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V+S++ E K L L  R    G  D   +++ D     I +  I+ G+++K+      ++V
Sbjct: 1076 VVSVDAESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKVTKVDER--QVIV 1124

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   L G VH  +L        +  Y+E   +P + + + + V+  V+E+ ++ +    
Sbjct: 1125 KLSESLAGPVHKIDL--------VDDYEEA--NP-AKFAKNEIVRVAVVEVDKSNK---R 1170

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + LS R S           L++ +    K + +   L    I++G+VKNV+ KG F+ L 
Sbjct: 1171 IRLSTRPS---------RILNSSLPVKDKEITQNTKLEVGDIIRGFVKNVSDKGLFVTLG 1221

Query: 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
              + A V + NLSD Y++  +++F + +LV GR++SV   + R+E++LK S         
Sbjct: 1222 GNVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISV--ANGRIEMSLKPS-VVDKDYVP 1278

Query: 1460 INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +  +S+L  G  + G++++VE +G FI I+ +
Sbjct: 1279 LTTISDLKEGQTITGRVRKVEEFGAFIDIDGS 1310



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 201/904 (22%), Positives = 340/904 (37%), Gaps = 146/904 (16%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G  V+  +G+ G  P           P   +  G  VK R++S+  ASR+I L+  +K T
Sbjct: 551  GLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLT--LKKT 608

Query: 660  RVSED-------DLVKLGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-----D 706
             V+ D       + + +G    G +++V+   A+V +    G  +G +P   ++     D
Sbjct: 609  LVNSDLPAIQSYEQIAVGQQALGTIINVLQHGAIVQFY---GRLRGFLPVSEMSEAYIQD 665

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVV 765
              EH  V ++V         ++  D +++ L++S K  S     +QL      I    VV
Sbjct: 666  PKEHFRVGQTVSI------YVISFDPDAAKLIVSCKDPSAFGLEKQLALKKLQI--GDVV 717

Query: 766  HGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
               V    +   FV      L    P +   D     +SKT    QS    I  VN    
Sbjct: 718  SAKVTQKTDDDVFVELADSSLKAILPVAHLTD---KSVSKT----QSALKKI-HVNQTLA 769

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
             + +  K     S          +L +K +++++SK  G  L  ++G  +G  + G V  
Sbjct: 770  ELVILEKNEARRS---------IILSQKPSLVKASKE-GKFLTTLDGARVGDEVSGYVRN 819

Query: 885  SNDFGVVVSF----------------EEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
                 V V F                E+    +G      +        + +   ++ + 
Sbjct: 820  ITATAVFVQFGGKLTALLPKSMIPREEQDKPDFGMFKSQSVTVKITSVNTELNRLVVAIP 879

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 988
             A   V    K V      E    + A           D+ + +   A +  VK+  L +
Sbjct: 880  GAAEQV----KKV------ETKGEKVANPVDESITTLDDISIGKLTKARIVSVKDTQLNV 929

Query: 989  SLPE-----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTA 1034
             L +      + S  Y S       K P K+F   Q V   V+          LP S  +
Sbjct: 930  QLADNIQGRIDVSQVYDSWEQIKDTKKPLKKFQPNQVVPVRVLGVHDARNHRFLPISHRS 989

Query: 1035 GRLLLLLKA-ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
               +L L A  S+ +  +S       +  VGS     +  +    L +       GR++ 
Sbjct: 990  SHSVLELSAKPSDVKEGASSEPLSFDNLKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNA 1049

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELSIKPSMLTVSEI 1150
             E +DD S ++ NL  NF IG  +  R++   A+S + D               L+    
Sbjct: 1050 MEASDDVS-LLTNLAKNFPIGSALRVRVVSVDAESKRLD---------------LSARSP 1093

Query: 1151 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILD--SAYEPSELQEFQR 1208
            GS+       ++    + G V KVD    ++ +S  L   +  +D    YE +   +F +
Sbjct: 1094 GSEDELTWDKIAQDVILVGKVTKVDERQVIVKLSESLAGPVHKIDLVDDYEEANPAKFAK 1153

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
                 + V   V+ ++K  K +RL  RP +   S   V        T +  GDI+ G + 
Sbjct: 1154 ----NEIVRVAVVEVDKSNKRIRLSTRPSRILNSSLPVKDKEITQNTKLEVGDIIRGFVK 1209

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
             +     GL V +G ++     F ++KN+  SD    Y + QF         Q VK +++
Sbjct: 1210 NVSDK--GLFVTLGGNVTA---FVQIKNL--SDAYLKYWKEQFQV------DQLVKGRII 1256

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
             ++        +E+SL+ S+              VD     L  I DL     + G V+ 
Sbjct: 1257 SVANG-----RIEMSLKPSV--------------VDKDYVPLTTISDLKEGQTITGRVRK 1297

Query: 1389 VTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
            V   G FI +  S  L      S +SD  V+   K +  G  V  +VL V+  +KR+ ++
Sbjct: 1298 VEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVKAKVLKVDVTAKRINLS 1357

Query: 1447 LKTS 1450
            LK S
Sbjct: 1358 LKPS 1361



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 160/782 (20%), Positives = 303/782 (38%), Gaps = 114/782 (14%)

Query: 127  TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTI 186
            + + I+ G +  G +  V +   ++   G LRG    ++  +  + +  E          
Sbjct: 619  SYEQIAVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEH--------- 669

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL---LYKGLSLETVQEGMVLTAYVKSI 243
            F VGQ VS  V+  D D       K+ +S +      L K L+L+ +Q G V++A V   
Sbjct: 670  FRVGQTVSIYVISFDPDAA-----KLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQK 724

Query: 244  EDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVY 295
             D    +     S    LP  +L + S    +  L        L + V+   +  R+ + 
Sbjct: 725  TDDDVFVELADSSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSII 784

Query: 296  LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
            LS  P  V    +K+ K ++    + G  V   V   + N    +    F G +     +
Sbjct: 785  LSQKPSLVK--ASKEGKFLTT---LDGARVGDEVSGYVRNITATAVFVQFGGKLTALLPK 839

Query: 356  NTFPTTNW-KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
            +  P     K D+   K  +  +        +V   LN  ++        VK  +   + 
Sbjct: 840  SMIPREEQDKPDFGMFKSQSVTVKIT-----SVNTELNRLVVAIPGAAEQVKKVETKGEK 894

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISD----------------VAE--------EEV 450
                VD  +  L DI    ++    V++ D                V++        ++ 
Sbjct: 895  VANPVDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDT 954

Query: 451  RKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
            +K  KK++    V VR+LG    R+   L      + +   L    SDVK G     + +
Sbjct: 955  KKPLKKFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEG--ASSEPL 1012

Query: 508  AVDSFGAIVQFPGGVKA---------LCPL--PHMSEFE-------IVKPGKKFKVGAEL 549
            + D+      + G V           L P     ++  E       +    K F +G+ L
Sbjct: 1013 SFDNLKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSAL 1072

Query: 550  VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
              RV+ V  +SKR+ ++ +    + +L    ++ +    +I  G +TK+++    V+   
Sbjct: 1073 RVRVVSVDAESKRLDLSARSPGSEDEL----TWDKIAQDVILVGKVTKVDERQVIVKLSE 1128

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRINLSFMMK 657
             + G   + +L  D      + +   ++V+           RI  S   SR +N S  +K
Sbjct: 1129 SLAGPVHKIDLVDDYEEANPAKFAKNEIVRVAVVEVDKSNKRIRLSTRPSRILNSSLPVK 1188

Query: 658  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKS 716
               ++++  +++G ++ G V  V+   +  +V   G     +  ++L+D +L++      
Sbjct: 1189 DKEITQNTKLEVGDIIRGFVKNVSDKGL--FVTLGGNVTAFVQIKNLSDAYLKY------ 1240

Query: 717  VIKPGYEFDQLL---VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
              K  ++ DQL+   ++   +  + +S K S+++      +  S +     + G V  + 
Sbjct: 1241 -WKEQFQVDQLVKGRIISVANGRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVE 1299

Query: 774  ETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            E G F+   G   L+G   RS+  D    D  K Y  G  V++ +L V+    RI LSLK
Sbjct: 1300 EFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVKAKVLKVDVTAKRINLSLK 1359

Query: 832  QS 833
             S
Sbjct: 1360 PS 1361



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 180/835 (21%), Positives = 319/835 (38%), Gaps = 132/835 (15%)

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL----SLETVQEGMVLTAYVKS 242
            F  G  V   VL  D        R+I L+L+ +L+   L    S E +  G      + +
Sbjct: 581  FREGLKVKARVLSTD-----AASRQIRLTLKKTLVNSDLPAIQSYEQIAVGQQALGTIIN 635

Query: 243  IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 302
            +  HG I+ F      GFLP + ++E    D K           + +T  +  +S DPD 
Sbjct: 636  VLQHGAIVQF-YGRLRGFLPVSEMSEAYIQDPKEHF-------RVGQTVSIYVISFDPDA 687

Query: 303  VSKCVT-KDL------KGISIDLLVPGMMVSTRVQSILENGVMLSFL-TYFTGTVDIFHL 354
                V+ KD       K +++  L  G +VS +V    ++ V +    +     + + HL
Sbjct: 688  AKLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQKTDDDVFVELADSSLKAILPVAHL 747

Query: 355  QN---TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIY 411
             +   +   +  K  +         IL  +   R++ L+  P L+         K G   
Sbjct: 748  TDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSLVKAS------KEGKFL 801

Query: 412  DQSKVVRV-DRGLGLLLDIPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
                  RV D   G + +I +T V         A +  S +  EE  K +    +   V 
Sbjct: 802  TTLDGARVGDEVSGYVRNITATAVFVQFGGKLTALLPKSMIPREEQDKPDFGMFKSQSVT 861

Query: 465  VRILGFR--------HLEGLATGILK--------ASAFEGLVFTHSDVKPGMVVKGKVIA 508
            V+I             + G A  + K        A+  +  + T  D+  G + K ++++
Sbjct: 862  VKITSVNTELNRLVVAIPGAAEQVKKVETKGEKVANPVDESITTLDDISIGKLTKARIVS 921

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSE-FEIVK----PGKKFKVGAELVFRVLGVKSKR--- 560
            V      VQ    ++    +  + + +E +K    P KKF+    +  RVLGV   R   
Sbjct: 922  VKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDTKKPLKKFQPNQVVPVRVLGVHDARNHR 981

Query: 561  -ITVTHKKTLVKSKLAI--------LSSYAEATDRLITH----GWITKIEKHGCFVRFYN 607
             + ++H+ +    +L+          SS   + D L       G++  + +   +V    
Sbjct: 982  FLPISHRSSHSVLELSAKPSDVKEGASSEPLSFDNLKVGSSYVGFVNNVGQGHLWVNLSP 1041

Query: 608  GVQGFAPRSELGLDPG--CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
             V+G     E   D       +  + +G  ++ R++S    S+R++LS     +  SED+
Sbjct: 1042 TVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRVVSVDAESKRLDLSAR---SPGSEDE 1098

Query: 666  LV--KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            L   K+   V  V  V   +   V V       G +    L D  E A   K       E
Sbjct: 1099 LTWDKIAQDVILVGKVTKVDERQVIVKLSESLAGPVHKIDLVDDYEEANPAKFA---KNE 1155

Query: 724  FDQLLVLDNESSN--LLLSAKYS-LINSAQQLPSDASHIHPNS------VVHGYVCNIIE 774
              ++ V++ + SN  + LS + S ++NS+  LP     I  N+      ++ G+V N+ +
Sbjct: 1156 IVRVAVVEVDKSNKRIRLSTRPSRILNSS--LPVKDKEITQNTKLEVGDIIRGFVKNVSD 1213

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G FV   G +T F       D       + + V Q V+  I+ V +  GRI +SLK S 
Sbjct: 1214 KGLFVTLGGNVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVAN--GRIEMSLKPSV 1271

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
                D  ++                      L  +     G  I G+V +  +FG  +  
Sbjct: 1272 V---DKDYV---------------------PLTTISDLKEGQTITGRVRKVEEFGAFIDI 1307

Query: 895  EEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVF 942
            +  +++ G     +++  TV       E G  ++A +L V    + ++LSLK  +
Sbjct: 1308 DGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVKAKVLKVDVTAKRINLSLKPSY 1362


>gi|116207588|ref|XP_001229603.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
 gi|88183684|gb|EAQ91152.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
          Length = 1766

 Score =  204 bits (519), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 231/890 (25%), Positives = 386/890 (43%), Gaps = 104/890 (11%)

Query: 2   AASSRKSQKKSSKDGP-KFNKASKNQFKNSKKQINDAVEAQDLALPP-----DDDVPVFP 55
            AS+ K  + +++  P K  KAS++   + KK   +       A  P      ++ P+FP
Sbjct: 12  GASASKPPRTATESRPSKRAKASESTKDDGKKGAKEQKSPAKPAAAPVVSKLKEEEPLFP 71

Query: 56  RGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKT-----ERKANETVDDLG 108
           RGGG  LT  E+ +I   A+ D  FE    G    N  ++K+      E    E+ D+  
Sbjct: 72  RGGGSVLTPLEQKQISIQAKKDVLFEEQSEGKKGDNSARRKRRKSRAAEAGTGESKDE-- 129

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
               D +          +  K +  G  + G V  +N  D+VI LP  L G        +
Sbjct: 130 ----DAVK------VEGLNFKRLVQGSLVLGTVCAINALDIVIALPNNLVGHVPITSISE 179

Query: 169 PILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIW 213
           P+     E+ E                 L ++F +GQ V   V   LD+      KR I 
Sbjct: 180 PLTQRLEESAEKEEDDDEPEDEGVDDVDLKSLFQIGQYVRAYVTSTLDESAPGKSKRHIG 239

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSG 271
           L+L  +    G+S + V E   L A V S+EDHG+++   +      GFLPR  L ++  
Sbjct: 240 LALDPAHSNTGISEQDVVENCTLMAAVASVEDHGFVMDISIAESKLRGFLPRKQLDKSIP 299

Query: 272 ID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQ 330
            + ++PG +L  +V +   + KVV LS+  D +    +   +  +I   +PG      V 
Sbjct: 300 EESLQPGSVLLCIVANKVASGKVVQLSTLSDRIGNPKSSPSEATTIGSFLPGTAADVLVS 359

Query: 331 SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVG 388
            + ++GV+   + +   T D+ H        +    Y    ++ ARI+   P ++   +G
Sbjct: 360 EVSQHGVVGKVMGHLDVTADLVHSGAGPDGVDIVAQYKVGSRIKARIICTFPNAKLPKLG 419

Query: 389 LTLNPYLLHNRAPPSHVKVGDIY-----------DQSKVVRVDRGLGLLLDIPSTPVSTP 437
           +++ P++L  +   ++    +I            D+  V RV+ G+GL +D+    +  P
Sbjct: 420 ISVLPHILSLKPKTANKDSQEILPTRILAHSATVDECTVQRVEPGIGLYVDVGVEGI--P 477

Query: 438 AYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
            +V IS V + +V  L      YK GS    R++G+ + +G+     +    E       
Sbjct: 478 GFVHISRVKDGKVDSLFESSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKKVLEQPFLRIE 537

Query: 495 DVKPGMVVKGK----VIAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           D+  G VV G     VI  D  G  IV    G+  L P  H+S+  +  P KKF+ G ++
Sbjct: 538 DIPVGAVVPGVVEKLVINQDGLGGLIVNIADGISGLVPEMHLSDVHLQHPEKKFREGMKV 597

Query: 550 VFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
             RVL     R  + +T KKTLV S+   + SY E    L   G I  + +HG  V+FY 
Sbjct: 598 KARVLSTNPARHQLRLTLKKTLVNSEALPIKSYDELAVGLQAPGTIVNVLQHGAIVQFYG 657

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            ++GF P SE+      +P   + VGQ +  + +                          
Sbjct: 658 QLRGFLPVSEMSEAYISDPKEHFRVGQTLALKKL-------------------------- 691

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEF 724
           ++G LVS  V   T + + V +      K  +P  HL D  +  +  +S +K        
Sbjct: 692 QIGDLVSAKVTQKTEDDIFVELTDNSL-KAVLPVAHLTD--KSVSKTQSALKKIHVNQTL 748

Query: 725 DQLLVLD-NES-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            +L+VL+ NE+  ++ LS K SL+ ++++  L + A      + V G+V NI  T  FV+
Sbjct: 749 SELVVLEKNEARRSITLSHKPSLVQASKEGKLLASADDARLGNEVAGFVRNITATAAFVQ 808

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           F G+LT   P+SK     +   S   Y  QS+   I  ++ + GR+ +++
Sbjct: 809 FAGKLTALLPKSKLPRDAQDKPSFGMYKSQSLTVKITSIDKDLGRLVVAI 858



 Score =  127 bits (318), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 226/1057 (21%), Positives = 438/1057 (41%), Gaps = 186/1057 (17%)

Query: 488  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKA--LCPLPHMSEFEIVKPGKKF 543
            G V  H DV   +V  G     D    + Q+  G  +KA  +C  P+          K  
Sbjct: 368  GKVMGHLDVTADLVHSG--AGPDGVDIVAQYKVGSRIKARIICTFPN---------AKLP 416

Query: 544  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
            K+G  ++  +L +K K      ++ L    LA  ++  E T + +  G        G +V
Sbjct: 417  KLGISVLPHILSLKPKTANKDSQEILPTRILAHSATVDECTVQRVEPGI-------GLYV 469

Query: 604  RF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
                 G+ GF   S +    +D   E S  Y VG V   R++          LSF  K  
Sbjct: 470  DVGVEGIPGFVHISRVKDGKVDSLFESSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKK-- 527

Query: 660  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV---------IAKGYSKGTIPTEHLAD-HLE 709
             V E   +++  +  G V       +V+           IA G S G +P  HL+D HL+
Sbjct: 528  -VLEQPFLRIEDIPVGAVVPGVVEKLVINQDGLGGLIVNIADGIS-GLVPEMHLSDVHLQ 585

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSN-LLLSAKYSLINSAQQLPSDA-SHIHPNSVVHG 767
            H    +   + G +    ++  N + + L L+ K +L+NS + LP  +   +       G
Sbjct: 586  HP---EKKFREGMKVKARVLSTNPARHQLRLTLKKTLVNS-EALPIKSYDELAVGLQAPG 641

Query: 768  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
             + N+++ G  V+F G+L GF P S        ++S+ Y                     
Sbjct: 642  TIVNVLQHGAIVQFYGQLRGFLPVS--------EMSEAYI-------------------- 673

Query: 828  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 887
                         S  +EHF + + +A+              +   IG ++  KV +  +
Sbjct: 674  -------------SDPKEHFRVGQTLAL--------------KKLQIGDLVSAKVTQKTE 706

Query: 888  FGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLS 937
              + V   ++S        H    +  ++ S ++            +L+  +A R + LS
Sbjct: 707  DDIFVELTDNSLKAVLPVAHLTDKSVSKTQSALKKIHVNQTLSELVVLEKNEARRSITLS 766

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHS 996
             K   +   +E      A   +   E +   G  + + A    V+    L   LP+    
Sbjct: 767  HKPSLVQASKEGKLLASADDARLGNEVA---GFVRNITATAAFVQFAGKLTALLPK---- 819

Query: 997  IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 1056
                S    + Q  P       QS+   + ++      GRL++ + ++++ E     +  
Sbjct: 820  ----SKLPRDAQDKPSFGMYKSQSLTVKITSI--DKDLGRLVVAIPSVADDEAKKVVKPT 873

Query: 1057 KKS--SYD----------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV- 1103
            +K+  S D          +G L +A +   K  +L ++      GRI +++V D   ++ 
Sbjct: 874  EKAINSLDDSITSADDLAIGKLTKARVKSAKETQLNVQIADNIQGRIDVSQVFDKWEDIP 933

Query: 1104 -VENLFSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKL 1154
              +     FK  + +  R++    A++++  P   +S   + ELS KPS L    +   L
Sbjct: 934  DAKRPLKRFKPNEILEVRVLGVHDARNHRFLPITHRSSHSVLELSTKPSDLKADTLPESL 993

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
              ++  + +G     +V  V + +  + +S +++ ++  ++++ + ++L   ++ F +G 
Sbjct: 994  SLDK--IEVGSTHVAFVNNVASNYLWVNLSPNVRGRINAMEASDDLAKLANLEKSFPVGS 1051

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
            A+   VL+++KEK+ + L  R      S +   +S D +Q    +G ++  +++K+    
Sbjct: 1052 ALQVRVLAVDKEKERVDLSAR-----TSGEAAQLSWDKIQ----QGLVLPAKVTKV--ND 1100

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
              ++V++   + G VH  +L +               +PLS +   + V+  V+E+ ++ 
Sbjct: 1101 RQVIVKLSELVAGPVHLADLADDYDD----------ANPLS-HSRNEIVRVAVVEVDKSN 1149

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
            +    V LS+R S           L++ +    K + K   L    I++G+V+NV+ KG 
Sbjct: 1150 K---RVRLSMRPS---------KVLNSSLPVKDKEVTKNTKLEVGDIIRGFVRNVSDKGL 1197

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ L   L A V + NLSD Y++  ++ + + +LV GR++SV     R+E+ LK S    
Sbjct: 1198 FVSLGGDLVALVKIKNLSDSYLKDWKEHYQVDQLVKGRIISVA--EGRIELNLKPS-VVD 1254

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                 +  +++L  G  + G++++VE +G FI I  +
Sbjct: 1255 KDYVPLTTIADLKEGQTITGKVRKVEEFGAFIEISGS 1291



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 156/391 (39%), Gaps = 49/391 (12%)

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            +VGS   A +  +    L +       GRI+  E +DD + +  NL  +F +G  +  R+
Sbjct: 999  EVGSTHVAFVNNVASNYLWVNLSPNVRGRINAMEASDDLAKLA-NLEKSFPVGSALQVRV 1057

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
            +A     D +K  + +LS + S       G         +  G  +   V KV++   ++
Sbjct: 1058 LAV----DKEKERV-DLSARTS-------GEAAQLSWDKIQQGLVLPAKVTKVNDRQVIV 1105

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
             +S  +   + + D A +  +        +  + V   V+ ++K  K +RL +RP +   
Sbjct: 1106 KLSELVAGPVHLADLADDYDDANPLSHSRN--EIVRVAVVEVDKSNKRVRLSMRPSKVLN 1163

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
            S   V        T +  GDI+ G +  +     GL V +G  L   V    L +  + D
Sbjct: 1164 SSLPVKDKEVTKNTKLEVGDIIRGFVRNVSDK--GLFVSLGGDLVALVKIKNLSDSYLKD 1221

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
                Y   Q D        Q VK +++ ++        +EL+L+ S+             
Sbjct: 1222 WKEHY---QVD--------QLVKGRIISVAEG-----RIELNLKPSV------------- 1252

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESP 1419
             VD     L  I DL     + G V+ V   G FI +S  ++   L   S ++D  V+  
Sbjct: 1253 -VDKDYVPLTTIADLKEGQTITGKVRKVEEFGAFIEISGSMNLSGLCHRSEMADRNVKDA 1311

Query: 1420 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
               +  G  V  RVL V+   KR+ + LK S
Sbjct: 1312 RTLYNEGDRVKARVLKVDLEKKRINLGLKPS 1342



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            V  ++ ++ G +++G V  V   G  V   G + AL  + ++S+  +    + ++V   +
Sbjct: 1173 VTKNTKLEVGDIIRGFVRNVSDKGLFVSLGGDLVALVKIKNLSDSYLKDWKEHYQVDQLV 1232

Query: 550  VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
              R++ V   RI +  K ++V      L++ A+  +     G + K+E+ G F+     +
Sbjct: 1233 KGRIISVAEGRIELNLKPSVVDKDYVPLTTIADLKEGQTITGKVRKVEEFGAFIEISGSM 1292

Query: 610  Q--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
               G   RSE+      +  ++Y+ G  VK R++      +RINL   +KP+
Sbjct: 1293 NLSGLCHRSEMADRNVKDARTLYNEGDRVKARVLKVDLEKKRINLG--LKPS 1342



 Score = 47.0 bits (110), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 121/571 (21%), Positives = 214/571 (37%), Gaps = 113/571 (19%)

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            K+  +D+ LG L+            V I  VA++E +K+ K  ++   +          +
Sbjct: 843  KITSIDKDLGRLV------------VAIPSVADDEAKKVVKPTEK--AINSLDDSITSAD 888

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
             LA G L  +  +    T  +V+    ++G++     F      P               
Sbjct: 889  DLAIGKLTKARVKSAKETQLNVQIADNIQGRIDVSQVFDKWEDIP--------------- 933

Query: 535  EIVKPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITH 590
            +  +P K+FK    L  RVLGV   R    + +TH+ +    +L+   S  +A D L   
Sbjct: 934  DAKRPLKRFKPNEILEVRVLGVHDARNHRFLPITHRSSHSVLELSTKPSDLKA-DTLPES 992

Query: 591  GWITKIEKHGCFVRFYNGV-----------------QGFAPRSELGLDPGCEPSSMYHVG 633
              + KIE     V F N V                        +L      E S  + VG
Sbjct: 993  LSLDKIEVGSTHVAFVNNVASNYLWVNLSPNVRGRINAMEASDDLAKLANLEKS--FPVG 1050

Query: 634  QVVKCRIMSSIPASRRINLSFMM--KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV---- 687
              ++ R+++      R++LS     +  ++S D  ++ G ++   V  V    V+V    
Sbjct: 1051 SALQVRVLAVDKEKERVDLSARTSGEAAQLSWDK-IQQGLVLPAKVTKVNDRQVIVKLSE 1109

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS- 744
             V    +          A+ L H+           E  ++ V++ + SN  + LS + S 
Sbjct: 1110 LVAGPVHLADLADDYDDANPLSHSR---------NEIVRVAVVEVDKSNKRVRLSMRPSK 1160

Query: 745  LINSAQQLPSDASHIHPNS------VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            ++NS+  LP     +  N+      ++ G+V N+ + G FV   G L          D  
Sbjct: 1161 VLNSS--LPVKDKEVTKNTKLEVGDIIRGFVRNVSDKGLFVSLGGDLVALVKIKNLSDSY 1218

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 858
              D  + Y V Q V+  I+ V    GRI L+LK         S + + ++    IA L+ 
Sbjct: 1219 LKDWKEHYQVDQLVKGRIISVAE--GRIELNLK--------PSVVDKDYVPLTTIADLKE 1268

Query: 859  SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--- 915
                            G  I GKV +  +FG  +      ++ G     ++A   V+   
Sbjct: 1269 ----------------GQTITGKVRKVEEFGAFIEISGSMNLSGLCHRSEMADRNVKDAR 1312

Query: 916  ----SGSVIQAAILDVAKAERLVDLSLKTVF 942
                 G  ++A +L V   ++ ++L LK  +
Sbjct: 1313 TLYNEGDRVKARVLKVDLEKKRINLGLKPSY 1343



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 15/193 (7%)

Query: 1053 KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 1112
            K   K +  +VG +++  +  +    L +  G      + I  ++D   + +++   +++
Sbjct: 1171 KEVTKNTKLEVGDIIRGFVRNVSDKGLFVSLGGDLVALVKIKNLSD---SYLKDWKEHYQ 1227

Query: 1113 IGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            + Q V  RII+ +           EL++KPS++    +    L    D+  GQ +TG V 
Sbjct: 1228 VDQLVKGRIISVAEG-------RIELNLKPSVVDKDYVP---LTTIADLKEGQTITGKVR 1277

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            KV+   A + IS  +        S      +++ +  ++ G  V   VL ++ EKK + L
Sbjct: 1278 KVEEFGAFIEISGSMNLSGLCHRSEMADRNVKDARTLYNEGDRVKARVLKVDLEKKRINL 1337

Query: 1233 VLRP--FQDGISD 1243
             L+P  F+DG +D
Sbjct: 1338 GLKPSYFKDGEAD 1350


>gi|164425200|ref|XP_962876.2| hypothetical protein NCU06272 [Neurospora crassa OR74A]
 gi|157070830|gb|EAA33640.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1774

 Score =  204 bits (518), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 232/878 (26%), Positives = 385/878 (43%), Gaps = 85/878 (9%)

Query: 7   KSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRE 66
           KS    SK G K  K        S K    A  A   +    ++ P+FPRGG   LT  E
Sbjct: 32  KSNDAGSKAGAKTGKQGNKPAPKSDKPAPPAPTAPATSTLLKEEEPMFPRGGASILTPLE 91

Query: 67  RDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYAN 124
             +I   A+ DA FE          ++  K T +KA E             S   P   +
Sbjct: 92  YKQIQVQAKNDALFE----------EQSSKATAKKAGEKEGKQKKSKKRSKSDDTPAKPD 141

Query: 125 -------KITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------------RAA 164
                   +  K +  G  + G V  +N  D+ + LP  + G                A+
Sbjct: 142 ADAVKVESLNFKRLVKGSLVLGSVCAINSLDIAVALPNNIIGHVPITAISAPLTKRLEAS 201

Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSL 220
              D   ++E E + D  L ++F +GQ V   V+   D+         KR I LSL+ SL
Sbjct: 202 AGNDNAEESEDENDNDVDLESLFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSL 261

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPG 277
              G++ + V     + A + S+EDHGY++   +      GFL R  + ++   + ++PG
Sbjct: 262 ANTGMAEQDVVVNSTVMAAIASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPG 321

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            +L  +V + +   KVV LS+  +T+           +ID  +PG      V  +  +G+
Sbjct: 322 AVLLCIV-TKNAKGKVVQLSTLGETMGNVENVPSTATTIDTFLPGTAADVLVSEVSSHGI 380

Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
           +   +     T D+ H        + ++ Y    ++ AR++   PT++      +P L  
Sbjct: 381 VGKIMGSLDVTADLVHSGAGPDGIDLEDTYKVGSRLKARVICNFPTAK------HPKLGI 434

Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 456
           +  P S      I ++  V +V+  +GL +D+    VS   +V IS V + +V  L +  
Sbjct: 435 SALPHST-----IVEKCTVKQVEPEIGLYVDVGVEGVS--GFVHISRVKDGKVDALFENS 487

Query: 457 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSF 512
             YK GS    R++G+   +G+    L+ S  E       D+  G VV G V  + V++ 
Sbjct: 488 GPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVVNAA 547

Query: 513 GA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKK 567
           G    IV+   G+  L P  H ++  +  P KKF+ G ++  RVL     S++I +T KK
Sbjct: 548 GVGGLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKK 607

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           TLV S L  + SY +        G I  + +HG  V+FY  ++GF P SE+      +P 
Sbjct: 608 TLVNSDLPAIQSYEQIAVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPK 667

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPN 683
             + VGQ V   ++S  P + ++ +S         E  L    +++G +VS  V   T +
Sbjct: 668 EHFRVGQTVSIYVISFDPDAAKLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQKTDD 727

Query: 684 AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLL 738
            V V  +A    K  +P  HL D  +  +  +S +K         +L++L+ NE+  +++
Sbjct: 728 DVFVE-LADSSLKAILPVAHLTD--KSVSKTQSALKKIHVNQTLAELVILEKNEARRSII 784

Query: 739 LSAKYSLINSAQQ----LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-- 792
           LS K SL+ ++++       D + +     V GY+ NI  T  FV+F G+LT   P+S  
Sbjct: 785 LSQKPSLVKASKEGKFLTTLDGARV--GDEVSGYIRNITATAVFVQFGGKLTALLPKSMI 842

Query: 793 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
              D  + D     +  QSV   I  VN+E  R+ +++
Sbjct: 843 PREDQDKPDFG--MFKSQSVTVKITSVNTELNRLVVAI 878



 Score =  160 bits (404), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 226/932 (24%), Positives = 416/932 (44%), Gaps = 134/932 (14%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTR 660
            GV GF   S +    +D   E S  Y VG V   R++  ++      I+L  S + +P  
Sbjct: 465  GVSGFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFL 524

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
              ED  + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +
Sbjct: 525  RIED--IPVGAVVSGVVEKMVVNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---E 578

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNI 772
               + G +   ++L  D  S  + L+ K +L+NS   LP+  S+  I       G + N+
Sbjct: 579  KKFREGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQSYEQIAVGQQALGTIINV 636

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            ++ G  V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K 
Sbjct: 637  LQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKD 696

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                          F LE+++A+              +   IG V+  KV +  D  V V
Sbjct: 697  PSA-----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFV 731

Query: 893  SFEEHSDVYGFITHHQLAGATVE-----------SGSVIQAAILDVAKAERLVDLSLKTV 941
               + S +   +    L   +V            + ++ +  IL+  +A R + LS K  
Sbjct: 732  ELADSS-LKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPS 790

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYA 1000
             +   +E          +   E S   G  + + A    V+    L   LP+        
Sbjct: 791  LVKASKEGKFLTTLDGARVGDEVS---GYIRNITATAVFVQFGGKLTALLPK-------- 839

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA- 1055
            S+     Q  P       QSV   + ++  ++   RL++ +   +E     ET   K A 
Sbjct: 840  SMIPREDQDKPDFGMFKSQSVTVKITSV--NTELNRLVVAIPGAAEQVKKVETKGEKVAN 897

Query: 1056 ---KKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENL 1107
               +  ++ D   +G L +A I  +K  +L ++      GRI +++V D    +   +  
Sbjct: 898  PVDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDTKKP 957

Query: 1108 FSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEEC 1159
               F+  Q V  R++    A++++  P   +S   + ELS KPS +        L F+  
Sbjct: 958  LKRFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEPLSFD-- 1015

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G    G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   
Sbjct: 1016 NLKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVR 1075

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V+S++ E K L L  R    G  D   +++ D     I +  I+ G+I+K+      ++V
Sbjct: 1076 VVSVDAESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKITKVDER--QVIV 1124

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   L G VH  +L        +  Y+E   +P + + + + V+  V+E+ ++ +    
Sbjct: 1125 KLSESLAGPVHKVDL--------VDDYEEA--NP-AKFAKNEIVRVAVVEVDKSNK---R 1170

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + LS R S           L++ +    K + +   L    IV+G+VKNV+ KG F+ L 
Sbjct: 1171 IRLSTRPS---------RILNSSLPVKDKEITQNTKLEVGEIVRGFVKNVSDKGLFVTLG 1221

Query: 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
              + A V + NLSD Y++  +++F + +LV GR++SV   + R+E++LK S         
Sbjct: 1222 GTVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISV--ANGRIEMSLKPS-VVDKDYVP 1278

Query: 1460 INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +  +S+L  G  + G++++VE +G FI I+ +
Sbjct: 1279 LTTISDLKEGQTITGRVRKVEEFGAFIDIDGS 1310



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 198/909 (21%), Positives = 339/909 (37%), Gaps = 156/909 (17%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G  V+  +G+ G  P           P   +  G  VK R++S+  ASR+I L+  +K T
Sbjct: 551  GLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLT--LKKT 608

Query: 660  RVSED-------DLVKLGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-----D 706
             V+ D       + + +G    G +++V+   A+V +    G  +G +P   ++     D
Sbjct: 609  LVNSDLPAIQSYEQIAVGQQALGTIINVLQHGAIVQFY---GRLRGFLPVSEMSEAYIQD 665

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVV 765
              EH  V ++V         ++  D +++ L++S K  S     +QL      I    VV
Sbjct: 666  PKEHFRVGQTVSI------YVISFDPDAAKLIVSCKDPSAFGLEKQLALKKLQI--GDVV 717

Query: 766  HGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
               V    +   FV      L    P +   D     +SKT    QS    I  VN    
Sbjct: 718  SAKVTQKTDDDVFVELADSSLKAILPVAHLTD---KSVSKT----QSALKKI-HVNQTLA 769

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
             + +  K     S          +L +K +++++SK  G  L  ++G  +G  + G +  
Sbjct: 770  ELVILEKNEARRS---------IILSQKPSLVKASKE-GKFLTTLDGARVGDEVSGYIRN 819

Query: 885  SNDFGVVVSF----------------EEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
                 V V F                ++    +G      +        + +   ++ + 
Sbjct: 820  ITATAVFVQFGGKLTALLPKSMIPREDQDKPDFGMFKSQSVTVKITSVNTELNRLVVAIP 879

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 988
             A   V    K V      E    + A           D+ + +   A +  VK+  L +
Sbjct: 880  GAAEQV----KKV------ETKGEKVANPVDESITTLDDISIGKLTKARIVSVKDTQLNV 929

Query: 989  SLPE-----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTA 1034
             L +      + S  Y S       K P K+F   Q V   V+          LP S  +
Sbjct: 930  QLADNIQGRIDVSQVYDSWEQIKDTKKPLKRFQPNQVVPVRVLGVHDARNHRFLPISHRS 989

Query: 1035 GRLLLLLKA-ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
               +L L A  S+ +  +S       +  VGS     +  +    L +       GR++ 
Sbjct: 990  SHSVLELSAKPSDVKEGASSEPLSFDNLKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNA 1049

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIA----------KSNKPDMKKSFLWELSIKPS 1143
             E +DD S ++ NL  NF IG  +  R+++           +  P  +    W+  I   
Sbjct: 1050 MEASDDVS-LLTNLAKNFPIGSALRVRVVSVDAESKRLDLSARSPGSEDELTWD-KIAQD 1107

Query: 1144 MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
            ++ V +I +K+   +  V + + + G V+KVD                  L   YE +  
Sbjct: 1108 VILVGKI-TKVDERQVIVKLSESLAGPVHKVD------------------LVDDYEEANP 1148

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
             +F +     + V   V+ ++K  K +RL  RP +   S   V        T +  G+IV
Sbjct: 1149 AKFAK----NEIVRVAVVEVDKSNKRIRLSTRPSRILNSSLPVKDKEITQNTKLEVGEIV 1204

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G +  +     GL V +G  +     F ++KN+  SD    Y + QF         Q V
Sbjct: 1205 RGFVKNVSDK--GLFVTLGGTVTA---FVQIKNL--SDAYLKYWKEQFQV------DQLV 1251

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            K +++ ++        +E+SL+ S+              VD     L  I DL     + 
Sbjct: 1252 KGRIISVANG-----RIEMSLKPSV--------------VDKDYVPLTTISDLKEGQTIT 1292

Query: 1384 GYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            G V+ V   G FI +  S  L      S +SD  V+   K +  G  V  +VL V+  +K
Sbjct: 1293 GRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVKAKVLKVDITAK 1352

Query: 1442 RVEVTLKTS 1450
            R+ + LK S
Sbjct: 1353 RINLGLKPS 1361



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 160/782 (20%), Positives = 303/782 (38%), Gaps = 114/782 (14%)

Query: 127  TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTI 186
            + + I+ G +  G +  V +   ++   G LRG    ++  +  + +  E          
Sbjct: 619  SYEQIAVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEH--------- 669

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL---LYKGLSLETVQEGMVLTAYVKSI 243
            F VGQ VS  V+  D D       K+ +S +      L K L+L+ +Q G V++A V   
Sbjct: 670  FRVGQTVSIYVISFDPDAA-----KLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQK 724

Query: 244  EDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVY 295
             D    +     S    LP  +L + S    +  L        L + V+   +  R+ + 
Sbjct: 725  TDDDVFVELADSSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSII 784

Query: 296  LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
            LS  P  V    +K+ K ++    + G  V   V   + N    +    F G +     +
Sbjct: 785  LSQKPSLVK--ASKEGKFLTT---LDGARVGDEVSGYIRNITATAVFVQFGGKLTALLPK 839

Query: 356  NTFPTTNW-KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
            +  P  +  K D+   K  +  +        +V   LN  ++        VK  +   + 
Sbjct: 840  SMIPREDQDKPDFGMFKSQSVTVKIT-----SVNTELNRLVVAIPGAAEQVKKVETKGEK 894

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISD----------------VAE--------EEV 450
                VD  +  L DI    ++    V++ D                V++        ++ 
Sbjct: 895  VANPVDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDT 954

Query: 451  RKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
            +K  K+++    V VR+LG    R+   L      + +   L    SDVK G     + +
Sbjct: 955  KKPLKRFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEG--ASSEPL 1012

Query: 508  AVDSFGAIVQFPGGVKA---------LCPL--PHMSEFE-------IVKPGKKFKVGAEL 549
            + D+      + G V           L P     ++  E       +    K F +G+ L
Sbjct: 1013 SFDNLKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSAL 1072

Query: 550  VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
              RV+ V  +SKR+ ++ +    + +L    ++ +    +I  G ITK+++    V+   
Sbjct: 1073 RVRVVSVDAESKRLDLSARSPGSEDEL----TWDKIAQDVILVGKITKVDERQVIVKLSE 1128

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRINLSFMMK 657
             + G   + +L  D      + +   ++V+           RI  S   SR +N S  +K
Sbjct: 1129 SLAGPVHKVDLVDDYEEANPAKFAKNEIVRVAVVEVDKSNKRIRLSTRPSRILNSSLPVK 1188

Query: 658  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKS 716
               ++++  +++G +V G V  V+   +  +V   G     +  ++L+D +L++      
Sbjct: 1189 DKEITQNTKLEVGEIVRGFVKNVSDKGL--FVTLGGTVTAFVQIKNLSDAYLKY------ 1240

Query: 717  VIKPGYEFDQLL---VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
              K  ++ DQL+   ++   +  + +S K S+++      +  S +     + G V  + 
Sbjct: 1241 -WKEQFQVDQLVKGRIISVANGRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVE 1299

Query: 774  ETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            E G F+   G   L+G   RS+  D    D  K Y  G  V++ +L V+    RI L LK
Sbjct: 1300 EFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVKAKVLKVDITAKRINLGLK 1359

Query: 832  QS 833
             S
Sbjct: 1360 PS 1361


>gi|320589974|gb|EFX02430.1| rRNA biogenesis protein [Grosmannia clavigera kw1407]
          Length = 1753

 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 211/836 (25%), Positives = 370/836 (44%), Gaps = 74/836 (8%)

Query: 52  PVFPRGGGHSLTQRERDEIH--AEVDAEFEA----VERGLHKKNKKKKKKTERKANETVD 105
           P+FPRGGG  LT  E  +I   A+ DA FE      ERG  K+ K  +K +E +   +  
Sbjct: 67  PLFPRGGGGVLTPLEYKQIQVQAKSDALFETSNGTTERGSEKRLKPNRKSSEGRPKPST- 125

Query: 106 DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LAR 162
                       +       +  K +  G  + G ++E+   ++ + LP  L G   +  
Sbjct: 126 --------AAPAEESVRIESLNYKRLVKGSLVLGQISEITPLEIAVSLPNNLVGHLSVTS 177

Query: 163 AADALDPILDNEIE--------ANEDNLLPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIW 213
            + AL   ++ E E        A+E+  + T+F +GQ +   V+   DDD ++  KR+I 
Sbjct: 178 ISQALTERIEAEAENANDDEDAAHEEVDVQTLFGLGQYIRVSVVSTEDDDAEKKKKRRIE 237

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSG 271
           LS R  L   GL+ + V     + A V S+ED G+++  G+      GFL +  L  +  
Sbjct: 238 LSTRPELANAGLTDQDVVRNSTVMASVISVEDRGFVMDLGIQDSDLRGFLAKKELDPSIP 297

Query: 272 ID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQ 330
            + ++PG ++  +V       KV  LS++   +           +I+  +PG  V   V 
Sbjct: 298 EERLQPGAVILCLVTGKATNGKVAQLSANKTQLGSIKNVASDATTINTFLPGTAVDVLVS 357

Query: 331 SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVG 388
            +   G+    L +   T D+ H        +    Y    K+ AR++   PT+    V 
Sbjct: 358 EVTARGLAGKVLGHLDATADMTHSGAGGSIGDLDEKYKVASKIKARVICTFPTADNPKVA 417

Query: 389 LTLNPYLL------------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
           ++L P++L            H++AP   + +  I +   V + +  +GL +D+    V  
Sbjct: 418 ISLLPHILSLQQQTAGGKNVHDKAPTQALPLSTIVESCVVRKAELNVGLWVDVGVEGV-- 475

Query: 437 PAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
           P +V IS V + +V  L +    +K GS  R R++G+  ++G+     +    E      
Sbjct: 476 PGFVHISRVKDGKVDALYESSGPFKVGSTHRGRVIGYNAVDGIFLVSFEQKVLEQSFIRI 535

Query: 494 SDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
            DV  G VV G +  +        G IV+   G+  L P  H S+ ++  P KKF+ G +
Sbjct: 536 EDVPVGDVVTGHIKKLLLNQNGISGLIVEIADGIAGLVPEIHFSDIKLQHPEKKFREGMK 595

Query: 549 LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +  RVL +   + +  +T KKTLV S +  + S+ + +      G +  +   G +V+FY
Sbjct: 596 VTARVLSIDPANHQFRLTLKKTLVNSDIPPVKSFDDLSVGQQCLGTVVNVVPIGAYVQFY 655

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTR 660
             ++GF P +E+      +P   +  GQ V  R++   P   ++ +S      F +   +
Sbjct: 656 GDLRGFLPVAEMSEAFIRDPKEHFRQGQAVNVRVLRFDPDLNKLVVSCKDPSAFGVDKRQ 715

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVI 718
             +D  +++ S+VS        ++V V ++  G  K T+P  HL+D    ++   +K  I
Sbjct: 716 ALQD--LQICSIVSAKAIAKHDDSVEVEIVENGL-KATLPIGHLSDRSPAKNQAALKR-I 771

Query: 719 KPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIE 774
             G    +LLVLD       + +S K SLI ++++  L  +       S+V G+V NI  
Sbjct: 772 HIGQVLPELLVLDKHEGRRVITVSQKPSLIAASKEGKLLVNMEDARTGSLVTGFVRNITP 831

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           T  FV+F   +    P+       +A+     +  Q++   I+ V  E GR+  SL
Sbjct: 832 TAAFVQFAANIVALLPKPLMPRTAQAEPDFGLHKSQTLALKIISV--ENGRLVASL 885



 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 197/922 (21%), Positives = 400/922 (43%), Gaps = 109/922 (11%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-- 662
            GV GF   S +    +D   E S  + VG   + R++          +SF  K    S  
Sbjct: 474  GVPGFVHISRVKDGKVDALYESSGPFKVGSTHRGRVIGYNAVDGIFLVSFEQKVLEQSFI 533

Query: 663  --EDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
              ED  V +G +V+G +   ++  N +  ++  IA G + G +P  H +D  L+H    +
Sbjct: 534  RIED--VPVGDVVTGHIKKLLLNQNGISGLIVEIADGIA-GLVPEIHFSDIKLQHP---E 587

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
               + G +   ++L +D  +    L+ K +L+NS          +       G V N++ 
Sbjct: 588  KKFREGMKVTARVLSIDPANHQFRLTLKKTLVNSDIPPVKSFDDLSVGQQCLGTVVNVVP 647

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G +V+F G L GF P ++  +    D  + +  GQ+V   +L  + +  ++ +S K   
Sbjct: 648  IGAYVQFYGDLRGFLPVAEMSEAFIRDPKEHFRQGQAVNVRVLRFDPDLNKLVVSCKDPS 707

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGS-ELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                D     +   +   ++    +KH+ S E++ VE  +  ++  G + + +       
Sbjct: 708  AFGVDKRQALQDLQICSIVSAKAIAKHDDSVEVEIVENGLKATLPIGHLSDRSP------ 761

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
                         +Q A   +  G V+ +  +LD  +  R++ +S K   I   +E    
Sbjct: 762  -----------AKNQAALKRIHIGQVLPELLVLDKHEGRRVITVSQKPSLIAASKEG--- 807

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
            +     +  R  S   G  + +      V+    +V  LP+        +  D+   K  
Sbjct: 808  KLLVNMEDARTGSLVTGFVRNITPTAAFVQFAANIVALLPKPLMPRTAQAEPDFGLHK-- 865

Query: 1012 QKQFL--------NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD- 1062
              Q L        NG+     V +LPS   A       KA + + T  +      +++D 
Sbjct: 866  -SQTLALKIISVENGR----LVASLPSDVPAEEKDTGEKAGAGSRTLLNPVDSSLATFDD 920

Query: 1063 --VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVT 1118
              +G + +A IT +K  +L ++      GR+ ++E+ D   +V   ++   NF+ GQ + 
Sbjct: 921  LHLGQITKARITSVKNTQLNVRLADNVSGRVDMSEIFDSWDDVPDAKSPLQNFEEGQILD 980

Query: 1119 ARIIAKSNK--------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
             RI+   +            K+  + ELSIKPS L   +    L  ++  V +G     +
Sbjct: 981  VRILGVHDAKRRVYLPITQQKRRSVLELSIKPSSLQGGKTPDILSIDK--VQVGSSWVAF 1038

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            V         L+++ H++ +L+ ++++ + S +++ +  F +G A+   V+ ++ EK  +
Sbjct: 1039 VNNHGANCLWLSLTPHVRGRLYGMEASDDMSLVKDLEANFPVGMAIHVRVVQVDVEKGRI 1098

Query: 1231 RLVLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
             L  R P  +G          D   + I +  ++  +++K+  G   ++VQ+   + G +
Sbjct: 1099 DLSARSPGGEG----------DLAWSSIEKNLVLPAKVTKVSDG--QVLVQLSKTVSGPL 1146

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
            H  ++ +         +D+      + Y +   ++  V+ +  + +    + LS R S  
Sbjct: 1147 HLVDIAD--------DFDQAT---TTAYFKHDIIRVSVVSVDASNK---RMRLSTRPSRV 1192

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
              SS    D         + +    D+ P  +++G+V+ ++ KG F+ L   + A V ++
Sbjct: 1193 LNSSFPVED---------REILDFSDVKPGSVIRGFVRGISDKGVFVNLGGDVVAFVRVT 1243

Query: 1410 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1469
            +LSD +++  +  F I +LV GRV +V+   K+++++LK S +   + + +  L +LH G
Sbjct: 1244 DLSDSFLKDWKAHFRIDQLVKGRVTAVKAEVKQIQMSLKAS-AIDENYAPLLTLDDLHEG 1302

Query: 1470 DIVIGQIKRVESYGLFITIENT 1491
             IV G++++V  +G FI ++N+
Sbjct: 1303 QIVSGRVRKVADFGAFIVVDNS 1324



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 102/488 (20%), Positives = 181/488 (37%), Gaps = 114/488 (23%)

Query: 492  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF--------EIVKPGKKF 543
            T  D+  G + K ++ +V +    V+    V        MSE         +   P + F
Sbjct: 917  TFDDLHLGQITKARITSVKNTQLNVRLADNVSGRV---DMSEIFDSWDDVPDAKSPLQNF 973

Query: 544  KVGAELVFRVLGV-KSKR---ITVTHKKTLVKSKLAILSSYAE--------ATDRL-ITH 590
            + G  L  R+LGV  +KR   + +T +K     +L+I  S  +        + D++ +  
Sbjct: 974  EEGQILDVRILGVHDAKRRVYLPITQQKRRSVLELSIKPSSLQGGKTPDILSIDKVQVGS 1033

Query: 591  GWITKIEKHG--CFV---------RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 639
             W+  +  HG  C           R Y    G     ++ L    E +  + VG  +  R
Sbjct: 1034 SWVAFVNNHGANCLWLSLTPHVRGRLY----GMEASDDMSLVKDLEAN--FPVGMAIHVR 1087

Query: 640  IMSSIPASRRINLS--------------------FMMKPTRVSEDD-LVKLGSLVSGVVD 678
            ++       RI+LS                       K T+VS+   LV+L   VSG + 
Sbjct: 1088 VVQVDVEKGRIDLSARSPGGEGDLAWSSIEKNLVLPAKVTKVSDGQVLVQLSKTVSGPLH 1147

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
            +V         IA  + + T        + +H  +  SV+           +D  +  + 
Sbjct: 1148 LVD--------IADDFDQATTTA-----YFKHDIIRVSVVS----------VDASNKRMR 1184

Query: 739  LSAKYS-LINSAQQLPS----DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
            LS + S ++NS+  +      D S + P SV+ G+V  I + G FV   G +  F   + 
Sbjct: 1185 LSTRPSRVLNSSFPVEDREILDFSDVKPGSVIRGFVRGISDKGVFVNLGGDVVAFVRVTD 1244

Query: 794  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
              D    D    + + Q V+  +  V +E  +I +SLK S      A  +    L E   
Sbjct: 1245 LSDSFLKDWKAHFRIDQLVKGRVTAVKAEVKQIQMSLKASAIDENYAPLLTLDDLHE--- 1301

Query: 854  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                                 G ++ G+V +  DFG  +  +  ++V G     ++A  +
Sbjct: 1302 ---------------------GQIVSGRVRKVADFGAFIVVDNSANVSGLCHRTEMADKS 1340

Query: 914  VESGSVIQ 921
            V   + ++
Sbjct: 1341 VRDATKLR 1348



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 109/247 (44%), Gaps = 21/247 (8%)

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
            SS +   ++ A++T++   ++ ++      G +H+ ++ DD        +    I +   
Sbjct: 1114 SSIEKNLVLPAKVTKVSDGQVLVQLSKTVSGPLHLVDIADDFDQATTTAYFKHDIIRVSV 1173

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDN 1176
              + A SNK          LS +PS +  S   +  + + +  DV  G  + G+V  + +
Sbjct: 1174 VSVDA-SNK-------RMRLSTRPSRVLNSSFPVEDREILDFSDVKPGSVIRGFVRGISD 1225

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
            +   + +   + A  F+  +    S L++++  F I + V G V ++  E K +++ L+ 
Sbjct: 1226 KGVFVNLGGDVVA--FVRVTDLSDSFLKDWKAHFRIDQLVKGRVTAVKAEVKQIQMSLKA 1283

Query: 1237 FQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                     +D +   + T   +HEG IV GR+ K+      +VV    ++ G  H TE+
Sbjct: 1284 -------SAIDENYAPLLTLDDLHEGQIVSGRVRKVADFGAFIVVDNSANVSGLCHRTEM 1336

Query: 1295 KNICVSD 1301
             +  V D
Sbjct: 1337 ADKSVRD 1343



 Score = 44.3 bits (103), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            +   SDVKPG V++G V  +   G  V   G V A   +  +S+  +      F++   +
Sbjct: 1204 ILDFSDVKPGSVIRGFVRGISDKGVFVNLGGDVVAFVRVTDLSDSFLKDWKAHFRIDQLV 1263

Query: 550  VFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
              RV  VK+  K+I ++ K + +    A L +  +  +  I  G + K+   G F+   N
Sbjct: 1264 KGRVTAVKAEVKQIQMSLKASAIDENYAPLLTLDDLHEGQIVSGRVRKVADFGAFIVVDN 1323

Query: 608  --GVQGFAPRSELG 619
               V G   R+E+ 
Sbjct: 1324 SANVSGLCHRTEMA 1337


>gi|403417509|emb|CCM04209.1| predicted protein [Fibroporia radiculosa]
          Length = 1465

 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 215/847 (25%), Positives = 369/847 (43%), Gaps = 93/847 (10%)

Query: 8   SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRER 67
           S+K+   D P   ++ K + +++ K+     +    A+P + D   FPRGGG S T  E 
Sbjct: 4   SKKRVLDDAPGNPRSKKTRTESTDKKGKSKADVSLPAIPEEVD---FPRGGGTSFTPLEV 60

Query: 68  DEIHAEV--DAEFEAVERGLHKKNKKKKK--KTERKANETVDDLGSLFGDGISGKLPRYA 123
             I AE   +A+ E  E    K+ ++K    K E +A++          D  S K+    
Sbjct: 61  KAIRAEAVKEADKELFEDKPTKRKRRKSDIDKAEHRASK----------DEKSEKI--RV 108

Query: 124 NKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE- 179
             +  K ++ GMK+ G V  V    L+I LP  L     +   +  L  +L+   E ++ 
Sbjct: 109 EHLNYKRVTVGMKILGQVVSVESLALIISLPNQLFAHVPITEISTQLTALLEEMGEVDDA 168

Query: 180 -------------DNLLPTIF-------HVGQLVSCIVLQLDDDKKEIGK---------R 210
                         + +P +F       +V  +VS I L    D   +G+         R
Sbjct: 169 SSSDEEEGSGTGASSSIPELFQMFRPGSYVRAIVSAIHLPGATDTTPLGRIRDEAHKASR 228

Query: 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS 270
           +I LSL    +  G+S   ++ G  ++A VKS EDHGYIL  G+    GFL   +  +  
Sbjct: 229 RIELSLVPEKVNAGVSKADLRAGFTMSAAVKSKEDHGYILDLGVSDINGFLSFKDAKQGP 288

Query: 271 GID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVST 327
             +   ++ G LL   +       +    S +  ++      ++   S   ++PG  V +
Sbjct: 289 FENPERIRVGHLLDISISKTTANGRTCTCSVNASSLMTASLSEVTNASS--ILPGTQVQS 346

Query: 328 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRA 386
            V ++L +G+ L  + YF GT+D FHL    P  N    Y   +K+ AR+L+ +  T   
Sbjct: 347 LVTAVLPDGLNLQIMGYFGGTIDQFHLLPGHPERN----YKMGQKLKARVLYAITATPPK 402

Query: 387 VGLTLNPYLLH-------------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
             L+L  ++L              N         G I D  KV+RV+   GL++++ S  
Sbjct: 403 FALSLASHVLKLVPKDTAGMDDGLNHNLDEIYPTGSILDAVKVIRVESERGLVVEVAS-- 460

Query: 434 VSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
                +V IS  ++E V  L      +K G+  R R+ G  H +GL    L+ S  E   
Sbjct: 461 -GVEGFVHISHTSDEHVPTLSSSSGPWKVGTVHRARVTGHFHFDGLLQLSLRPSVLEQKF 519

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
               +V+ G V+KG V  +      V   G V  +    H ++ ++ +P ++FK G  + 
Sbjct: 520 LQVGEVQVGEVLKGAVKRLTDSAMFVSISGSVDGVIWPNHYADIQLKQPQRRFKPGGSIK 579

Query: 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            RVL V  + +RI +T KKTL++S L I+S + +A   L+TH  + +       V FYN 
Sbjct: 580 CRVLVVDTQRQRIVLTAKKTLLESALPIISKFEDARVGLVTHAVVFRASDKSLQVEFYNN 639

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLV 667
           V+   P  E   +     S+ + +G+ V+ RIMS  P + RI  S     P  ++  + +
Sbjct: 640 VKAVVPAGEAS-ETAVGLSTAFPIGKPVQVRIMSIDPETSRIVASIRQTAPNYLASIENI 698

Query: 668 K---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYE 723
               +G  V G +  V  N   +  +     +  I   +LA+    +   +++ ++ G +
Sbjct: 699 ASIGIGDTVEGDITEVQ-NEKAIVTLRPSQVRTVISLNNLANRRGVSVAQLRASLQVGEK 757

Query: 724 FDQLLVL--DNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
              L+V+  + E   + ++ K    I  AQ++P D + I    +V G V +    G  V+
Sbjct: 758 LQDLVVVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQIGQIVQGRVLHHGRRGALVK 817

Query: 781 FLGRLTG 787
               ++G
Sbjct: 818 LTNTVSG 824



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 216/492 (43%), Gaps = 59/492 (11%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
            K PQ++F  G S+   V+ + +     R  ++L A      S+     K     VG +  
Sbjct: 566  KQPQRRFKPGGSIKCRVLVVDTQ----RQRIVLTAKKTLLESALPIISKFEDARVGLVTH 621

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
            A +       L+++F    +  +       + S     L + F IG+ V  RI+  S  P
Sbjct: 622  AVVFRASDKSLQVEF----YNNVKAVVPAGEASETAVGLSTAFPIGKPVQVRIM--SIDP 675

Query: 1129 DMKKSFLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1187
            +  +         P+ L ++  I S        + IG  V G + +V NE A++T+    
Sbjct: 676  ETSRIVASIRQTAPNYLASIENIAS--------IGIGDTVEGDITEVQNEKAIVTLRPSQ 727

Query: 1188 KAQLFILDSAYEPSELQEFQRR--FHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDK 1244
               +  L++      +   Q R    +G+ +   V+ S N E+  +R+  +P +     +
Sbjct: 728  VRTVISLNNLANRRGVSVAQLRASLQVGEKLQDLVVVSRNPERGFVRIATKPKEKITLAQ 787

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             + +    +Q     G IV GR+  +  G  G +V++   + G +H T++ +        
Sbjct: 788  KIPLDLATIQI----GQIVQGRV--LHHGRRGALVKLTNTVSGTLHPTDVDD-------- 833

Query: 1305 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1364
             ++ G+  P + Y     +K  V+ + +  R     +L+L        ST  S L    D
Sbjct: 834  DFESGKAFPPADY----ILKAVVIAVDKDRR-----QLTL--------STRPSRLQPRRD 876

Query: 1365 TP--GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1422
             P     +  I DL     ++G++K V   G F+ L R++DA+V +  L D YV+  +  
Sbjct: 877  EPVIDPEIASIGDLKEGETIRGFIKQVAEHGIFVTLGREIDARVQIKELFDEYVKDWKSR 936

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
            F   +LV GR+L V+   K+VE+T ++ D +T S +    L++L  G  V G IKR E Y
Sbjct: 937  FVAHQLVRGRILRVDIAKKQVEMTFRSGDLKTNSLT----LADLSEGQKVDGCIKRTEEY 992

Query: 1483 GLFITIENTNLV 1494
            GLFI IE + L 
Sbjct: 993  GLFIQIEGSKLT 1004



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 185/814 (22%), Positives = 319/814 (39%), Gaps = 135/814 (16%)

Query: 477  ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ----FPGGVKALCPLPHMS 532
            A+ ++ AS  E  V   S + PG  V+  V AV   G  +Q    F G +     LP   
Sbjct: 321  ASSLMTASLSE--VTNASSILPGTQVQSLVTAVLPDGLNLQIMGYFGGTIDQFHLLPG-- 376

Query: 533  EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLIT 589
                  P + +K+G +L  RVL      IT T  K   +L    L ++       D  + 
Sbjct: 377  -----HPERNYKMGQKLKARVLYA----ITATPPKFALSLASHVLKLVPKDTAGMDDGLN 427

Query: 590  HGW--------------ITKIE-KHGCFVRFYNGVQGFAPRSELGLD--PGCEPSS-MYH 631
            H                + ++E + G  V   +GV+GF   S    +  P    SS  + 
Sbjct: 428  HNLDEIYPTGSILDAVKVIRVESERGLVVEVASGVEGFVHISHTSDEHVPTLSSSSGPWK 487

Query: 632  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVV 687
            VG V + R+         + LS  ++P+ + +  L    V++G ++ G V  +T +A+ V
Sbjct: 488  VGTVHRARVTGHFHFDGLLQLS--LRPSVLEQKFLQVGEVQVGEVLKGAVKRLTDSAMFV 545

Query: 688  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 745
             +   G   G I   H AD  L+     +   KPG     ++LV+D +   ++L+AK +L
Sbjct: 546  SI--SGSVDGVIWPNHYADIQLKQP---QRRFKPGGSIKCRVLVVDTQRQRIVLTAKKTL 600

Query: 746  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            + SA  + S         V H  V    +    V F   +    P  +A +     LS  
Sbjct: 601  LESALPIISKFEDARVGLVTHAVVFRASDKSLQVEFYNNVKAVVPAGEASETA-VGLSTA 659

Query: 806  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
            + +G+ V+  I+ ++ ET RI  S++Q+  +         +    E IA +         
Sbjct: 660  FPIGKPVQVRIMSIDPETSRIVASIRQTAPN---------YLASIENIASIG-------- 702

Query: 866  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 925
                    IG  +EG + E  +   +V+    S V   I+ + LA     S + ++A++ 
Sbjct: 703  --------IGDTVEGDITEVQNEKAIVTLRP-SQVRTVISLNNLANRRGVSVAQLRASL- 752

Query: 926  DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV---- 981
                 E+L DL    V + R  E    R A K K K   ++ + +      I +IV    
Sbjct: 753  --QVGEKLQDL----VVVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQIGQIVQGRV 806

Query: 982  ----KENYLVLSLPEYNHSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAG 1035
                +   LV      + ++    V D   + + FP   ++    VIA            
Sbjct: 807  LHHGRRGALVKLTNTVSGTLHPTDVDDDFESGKAFPPADYILKAVVIAV-------DKDR 859

Query: 1036 RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE-----ITEIKPLELRLKFGIGFHGR 1090
            R L L    S  +    +         +G L + E     I ++    + +  G     R
Sbjct: 860  RQLTLSTRPSRLQPRRDEPVIDPEIASIGDLKEGETIRGFIKQVAEHGIFVTLGREIDAR 919

Query: 1091 IHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEI 1150
            + I E+ D+    V++  S F   Q V  RI+    + D+ K  + E++ +   L  + +
Sbjct: 920  VQIKELFDE---YVKDWKSRFVAHQLVRGRIL----RVDIAKKQV-EMTFRSGDLKTNSL 971

Query: 1151 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ--- 1207
                     D+S GQ+V G + + + E+ L      ++ +   L      SEL + +   
Sbjct: 972  TL------ADLSEGQKVDGCIKRTE-EYGLF-----IQIEGSKLTGLCHKSELSDNKDAN 1019

Query: 1208 -----RRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
                 R F  G  V   +LSI++EK+ + L L+P
Sbjct: 1020 VTLALRSFREGDQVKAIILSIDEEKRRISLGLKP 1053



 Score = 44.3 bits (103), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 121/278 (43%), Gaps = 37/278 (13%)

Query: 209  KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG--------LPSFTGF 260
            K KI L+ ++ L      L T+Q G ++          G +LH G          + +G 
Sbjct: 780  KEKITLAQKIPL-----DLATIQIGQIV---------QGRVLHHGRRGALVKLTNTVSGT 825

Query: 261  LPRNNLAEN--SGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK---DLKGI 314
            L   ++ ++  SG    P   +L+ VV ++D+ R+ + LS+ P  +     +   D +  
Sbjct: 826  LHPTDVDDDFESGKAFPPADYILKAVVIAVDKDRRQLTLSTRPSRLQPRRDEPVIDPEIA 885

Query: 315  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
            SI  L  G  +   ++ + E+G+ ++        V I  L + +   +WK+ +  H+ V 
Sbjct: 886  SIGDLKEGETIRGFIKQVAEHGIFVTLGREIDARVQIKELFDEY-VKDWKSRFVAHQLVR 944

Query: 375  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKV---VRVDRGLGLLLDIPS 431
             RIL VD   + V +T     L   +    + + D+ +  KV   ++     GL + I  
Sbjct: 945  GRILRVDIAKKQVEMTFRSGDLKTNS----LTLADLSEGQKVDGCIKRTEEYGLFIQIEG 1000

Query: 432  TPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRIL 468
            + ++   + + +SD  +  V    + ++EG  V+  IL
Sbjct: 1001 SKLTGLCHKSELSDNKDANVTLALRSFREGDQVKAIIL 1038


>gi|402220022|gb|EJU00095.1| U3 snoRNP-associated protein Rrp5 [Dacryopinax sp. DJM-731 SS1]
          Length = 1492

 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 177/642 (27%), Positives = 287/642 (44%), Gaps = 85/642 (13%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEF-EAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
           FPRGGG +LT  E  E   E   E  EA E+ L +K K   K  E KA            
Sbjct: 66  FPRGGGTTLTAHEVKEAREEAKREIKEAEEKTLKRKRKSSMKGGEVKAES---------- 115

Query: 113 DGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD 172
              +G    + N    K ++ G +L G +  +    L++ LP  L G       +   L 
Sbjct: 116 ---AGTRVEHMN---YKRLNPGTRLLGQITTIYPLHLILSLPNQLVGYV-PITGISAQLT 168

Query: 173 NEIEANEDNL----------------------LPTIFHVGQLV-SCIV------------ 197
            E+E  +                         L +IFHVGQ V +C+V            
Sbjct: 169 TELEKEDARFTSAAEGEDEDMEEREEEEGAPELASIFHVGQYVQACVVNVRSAGTRAAPE 228

Query: 198 LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
           L+   ++ E   R++ L+L   ++ +G+ ++ + +G +L   +KS+EDHGY +  G+P  
Sbjct: 229 LEKPKNEMEAMARRVELTLVPEVVNEGVVIKDLVKGFMLPGAIKSVEDHGYSVELGIPHL 288

Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-I 316
           +GFLP  N   +S   + PG LL   V  +  ++++  L+  P    +     L  +S +
Sbjct: 289 SGFLPFTNTPPSSS-RLSPGHLLTCTVSEVPASKRICTLTIQPSQKEEV----LDQVSNV 343

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
             L+PG +V   + + + +G+ L  L +F GT+D+ HL    P       Y    K+ AR
Sbjct: 344 TSLLPGTLVRGLITASVTSGLNLQILGFFEGTIDLTHLPKD-PAL-----YKVGTKLKAR 397

Query: 377 ILFVDPTSRAVGLTLN--PYLLHNRAPP-------SHVKVGDIYDQSKVVRVDR--GLGL 425
           +L+  P S      L+  P+++   AP             G+I    KVVRV+   GL +
Sbjct: 398 VLWHLPGSSPPKFALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVVRVEAEWGLSV 457

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILK 482
           +LD       T  +V I+++++E +  L      +K G+    R+LGF  L+GL    LK
Sbjct: 458 VLD----DEETRGFVHIANISDEHIPALSATSGAWKVGTKHDARVLGFYALDGLLRLSLK 513

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            S  E       D  PG +VKG +  +   G  V   G +     L  +++ E+  P K+
Sbjct: 514 PSQLERRFVQTGDFTPGEIVKGAIENLTDVGMFVDVGGDISGRVALDQLADIELKHPEKR 573

Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           FK GA +  R+L V  +  R+T+T KK+L+ S L I++   +A   ++    ++K+   G
Sbjct: 574 FKAGASVKCRILAVDPEHGRLTLTCKKSLLSSDLPIIAKLDDAKQGMVADAVVSKVLPSG 633

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
             V  Y GV+GF P  E           +   GQ VK +++S
Sbjct: 634 ALVMLYGGVKGFVPIREASEGYIKSVDEILKPGQAVKVKVLS 675



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 102/445 (22%), Positives = 173/445 (38%), Gaps = 83/445 (18%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+  IT      L L+    F G I +T +  D +         +K+G  + AR+  
Sbjct: 349  GTLVRGLITASVTSGLNLQILGFFEGTIDLTHLPKDPAL--------YKVGTKLKARV-- 398

Query: 1124 KSNKPDMKKSFLWEL-SIKPSMLTVSEIGS--KLLFEECDVSIGQRVTGY--------VY 1172
                       LW L    P    +S +     L   E D    Q    Y        V 
Sbjct: 399  -----------LWHLPGSSPPKFALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVV 447

Query: 1173 KVDNEWALLTISRHLKAQLFI----LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
            +V+ EW L  +    + + F+    +   + P+ L      + +G      VL       
Sbjct: 448  RVEAEWGLSVVLDDEETRGFVHIANISDEHIPA-LSATSGAWKVGTKHDARVLGFYALDG 506

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK----ILSGVGGLVVQIGPH 1284
            LLRL L+P Q               + F+  GD   G I K     L+ VG + V +G  
Sbjct: 507  LLRLSLKPSQ-------------LERRFVQTGDFTPGEIVKGAIENLTDVG-MFVDVGGD 552

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            + GRV   +L +I +  P     E +F        G  VKC++L +        H  L+L
Sbjct: 553  ISGRVALDQLADIELKHP-----EKRFK------AGASVKCRILAVDPE-----HGRLTL 596

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
                    +   S LS+D+      + K++D    M+    V  V   G  +ML   +  
Sbjct: 597  --------TCKKSLLSSDLPI----IAKLDDAKQGMVADAVVSKVLPSGALVMLYGGVKG 644

Query: 1405 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1464
             V +   S+GY++S ++    G+ V  +VLSV      +  +L+ +       +   ++ 
Sbjct: 645  FVPIREASEGYIKSVDEILKPGQAVKVKVLSVNTEEGNILASLRQAQPSYQPAAPGVDVE 704

Query: 1465 NLHVGDIVIGQIKRVESYGLFITIE 1489
            ++ VG  V  +IK V++  + ++I+
Sbjct: 705  DIAVGSNVEAEIKDVQAINVVLSIQ 729



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 130/281 (46%), Gaps = 38/281 (13%)

Query: 1220 VLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
            V+S N EK+++ L V  P  +     +  IS   +    H G I+ G++  I    G   
Sbjct: 768  VVSKNPEKRIVILAVTLPGSNAGPSSSTAISWKTL----HVGQILLGQV--IGEKNGSTS 821

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V++  +L GR+H  +L +          + G   P +G      +K  V+ +    R   
Sbjct: 822  VRLSQYLIGRLHPLDLTD--------NLENGIVFPRAG----SALKVAVVGVDPHAR--- 866

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
                    +LD   ST  S L+ +   P     +  +++L  +  V G VKN++  G F+
Sbjct: 867  --------TLD--LSTRPSRLNPESHPPIVDPEITSLDNLQVDDKVGGVVKNISDSGLFV 916

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR--- 1453
             L R + A+V +  L D +V+  +  F + ++V G++  V+    RV++++++   +   
Sbjct: 917  SLGRNITARVQIKELFDEFVKDWQTRFSVNQVVKGKITHVDHEKNRVDMSMRSGVRKHHK 976

Query: 1454 -TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             +  + ++ ++ +      V G++  +  YGLFI I+++++
Sbjct: 977  SSGKEDKLRHMKDFEKRQKVTGKVTSITKYGLFILIDDSDV 1017



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 154/364 (42%), Gaps = 33/364 (9%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 554
           PG +V+G + A  + G  +Q  G  +    L H+      K    +KVG +L  RVL   
Sbjct: 348 PGTLVRGLITASVTSGLNLQILGFFEGTIDLTHLP-----KDPALYKVGTKLKARVLWHL 402

Query: 555 -GVKSKRITVT---HKKTLVKSKLAILSSYAEATDRLITHGW-ITKIEKHGCFVRFYNG- 608
            G    +  ++   H   L   ++  +S+  +     I HG  + ++E         +  
Sbjct: 403 PGSSPPKFALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVVRVEAEWGLSVVLDDE 462

Query: 609 -VQGF---APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
             +GF   A  S+  +      S  + VG     R++        + LS  +KP+++ E 
Sbjct: 463 ETRGFVHIANISDEHIPALSATSGAWKVGTKHDARVLGFYALDGLLRLS--LKPSQL-ER 519

Query: 665 DLVKLG-----SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
             V+ G      +V G ++ +T   V ++V   G   G +  + LAD  L+H    +   
Sbjct: 520 RFVQTGDFTPGEIVKGAIENLT--DVGMFVDVGGDISGRVALDQLADIELKHP---EKRF 574

Query: 719 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
           K G     ++L +D E   L L+ K SL++S   + +         V    V  ++ +G 
Sbjct: 575 KAGASVKCRILAVDPEHGRLTLTCKKSLLSSDLPIIAKLDDAKQGMVADAVVSKVLPSGA 634

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V   G + GF P  +A +G    + +    GQ+V+  +L VN+E G I  SL+Q+  S 
Sbjct: 635 LVMLYGGVKGFVPIREASEGYIKSVDEILKPGQAVKVKVLSVNTEEGNILASLRQAQPSY 694

Query: 838 TDAS 841
             A+
Sbjct: 695 QPAA 698



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 165/399 (41%), Gaps = 63/399 (15%)

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            G +HI  ++D+    +      +K+G    AR++            L  LS+KPS L   
Sbjct: 466  GFVHIANISDEHIPALSATSGAWKVGTKHDARVLGF-----YALDGLLRLSLKPSQL--- 517

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
                +   +  D + G+ V G +  + +    + +   +  ++  LD   +  EL+  ++
Sbjct: 518  ---ERRFVQTGDFTPGEIVKGAIENLTDVGMFVDVGGDISGRV-ALDQLAD-IELKHPEK 572

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
            RF  G +V   +L+++ E   L L  +      SD  +    D+ +    +G +    +S
Sbjct: 573  RFKAGASVKCRILAVDPEHGRLTLTCKKSLLS-SDLPIIAKLDDAK----QGMVADAVVS 627

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE----GQFVK 1324
            K+L   G LV+     LYG V       + + +   GY       +   DE    GQ VK
Sbjct: 628  KVLPS-GALVM-----LYGGVK----GFVPIREASEGY-------IKSVDEILKPGQAVK 670

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
             KVL ++ T  G              ++S   +  S     PG     +ED++    V+ 
Sbjct: 671  VKVLSVN-TEEGNI------------LASLRQAQPSYQPAAPGV---DVEDIAVGSNVEA 714

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVL----LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
             +K+V +    + +       +L    L+N  +  VE+       G +++  V+  +   
Sbjct: 715  EIKDVQAINVVLSIQPGGQTALLSLANLANRRNTTVEALRLSLVPGTVLSDLVVVSKNPE 774

Query: 1441 KRV---EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
            KR+    VTL  S++  +S + I+    LHVG I++GQ+
Sbjct: 775  KRIVILAVTLPGSNAGPSSSTAIS-WKTLHVGQILLGQV 812


>gi|212530734|ref|XP_002145524.1| rRNA biogenesis protein RRP5, putative [Talaromyces marneffei ATCC
            18224]
 gi|210074922|gb|EEA29009.1| rRNA biogenesis protein RRP5, putative [Talaromyces marneffei ATCC
            18224]
          Length = 1807

 Score =  200 bits (508), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 322/1418 (22%), Positives = 587/1418 (41%), Gaps = 181/1418 (12%)

Query: 54   FPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKK----------------------- 88
            FPRGGG  LT  ER +I   A  D  FE    G   +                       
Sbjct: 64   FPRGGGSVLTPLERKQIQIQATRDVLFEQKRSGKSAEALDDDVSDADVDMQDEGKKTTAT 123

Query: 89   -------NKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVV 141
                     KK + TE+K  E V   G                 ++ K ++ G  + G V
Sbjct: 124  TKKSRKSKNKKSRDTEKKTKEGVRVEG-----------------LSFKRLTIGTMVLGQV 166

Query: 142  AEVNEKDLVICLPGGLRG---LARAADALDPILD---------NEIEANEDNLLPT-IFH 188
              +N  D+ + LP  L G   L   ++  D  ++         +++E+ ED+L P+  F+
Sbjct: 167  TSINSHDIGLALPNNLTGYVPLTAISETFDKKIEKVLNAEDDGDDVESEEDSLDPSDYFY 226

Query: 189  VGQLVSCIVLQLDDDKKEIG--KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
            +GQ +   V    +   + G  K+KI L+L       GL+   + EG+++ A V S+EDH
Sbjct: 227  IGQYLRAYVTSTGNSSADPGANKKKIELTLDPRQTNSGLAESDLVEGVMVQASVTSVEDH 286

Query: 247  GYILHFGL-PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
            G ++  GL     GF+     A     +VK G +L  VV  ++ +R +  LSS     + 
Sbjct: 287  GCVMDIGLGKKLKGFM-----ASTDDSNVKEGAVLLCVVTGVNASRTIFQLSSKLQAAAS 341

Query: 306  CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
              +      +I   +PG      + S+ E G++   +     T+D  H      + +   
Sbjct: 342  PKSVLKSAPTIQAFLPGTAAEMLLTSVTETGLVGKIMGLLDATIDFVHSGANSGSFDLTT 401

Query: 366  DYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAPPSHVK-----VGDIYDQSKVVR 418
             Y    K+ ARI    P +    VG ++   +L  +   S  +     +G I D  KV  
Sbjct: 402  KYQLGAKIKARITCTFPAAEPFKVGASILENVLDWKRTLSTQEEDSPSIGTILD-VKVAT 460

Query: 419  VDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
            V+ GLGL  +  S       +++ +SD   E +   +  +K GS  + RI+G+  ++ L 
Sbjct: 461  VEPGLGLYAEFGSPKHIGFVHISRVSDGTVETISAEQGPFKTGSKHKARIIGYNSVDNLY 520

Query: 478  TGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMS 532
                +    +       DV  G VVKGK+    I  +   G I+    G+  L P  H +
Sbjct: 521  LLSFEKKVIDQPYIRLEDVPLGEVVKGKIEKLLIGPEGIDGLILSIADGITGLVPSMHFA 580

Query: 533  EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
            +  +  P KKF+ G  +  RVL V    +++ +T KK+L+ S  AI   Y +      + 
Sbjct: 581  DTVLQHPEKKFREGLTVSARVLSVNLDKRQMRLTLKKSLLNSDSAIWKDYNDIVPGKQSP 640

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            G +  I+ +G  V+FY  V+ F P SE+      +PS  +  GQVV    +S   A+ ++
Sbjct: 641  GTLINIQPNGATVQFYGTVRAFLPVSEMSEAYIKDPSQHFRKGQVVNVHAISVDTAAEKL 700

Query: 651  NLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
             +S    P+  SE        ++ G LV+G V   + + +++ +   G +   +   HL 
Sbjct: 701  VVS-CKDPSTSSEAYREAFGEIRPGVLVTGTVFEKSSDDLLLKLDKYGVT-ARLSAIHLV 758

Query: 706  D-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIH 760
            D     A    + ++ G +   LLVL+ +  + L+  + K SL  + ++  LP+    + 
Sbjct: 759  DGDAAKAASAFAKVRVGQKLSDLLVLEAKRVHRLIKVTHKSSLRKALKKNSLPATFEELE 818

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDV 819
              + + G+V  I   G FV FLG L G  PR + VD + A+      Y  QS+ + +  +
Sbjct: 819  VGTEITGFVRGITSHGIFVEFLGGLNGLLPR-RLVDDEHANKPDFGLYRSQSLTATVHQI 877

Query: 820  NSETGRITLSLK--QSCCSSTDASFMQEHFLLEEKIAM-LQSSKHNGSELKWVEGFIIGS 876
            + +  R TL+++  +    S      ++    +EK+A  +  S H  ++      F IG 
Sbjct: 878  DEDNRRFTLTMRPLELPTGSRPEQSKEKPLPEDEKLANPVDESIHTAAD------FTIGK 931

Query: 877  VIEGKVHE----------SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILD 926
            V + ++            +++    +   E  D +  I   +          ++   IL 
Sbjct: 932  VTKARIASIKETQINVVLADNLQGRIDVSEVFDKWDDIKDRKQPLQKFRVKEILPVRILG 991

Query: 927  V--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN 984
            +  A++ R + +S +T     +  +         + K    + + V  ++   V  V  +
Sbjct: 992  LHDARSHRFLPISHRTSKHPVYELSAKPSFISSAEPKPLTLEQVKVGSSMIGFVNNVAND 1051

Query: 985  YLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
            YL +SL P     +    +S D +T    +  +  G ++   V  +      G L L +K
Sbjct: 1052 YLWVSLSPNVRGRVRAIDLSDDLSTLADLESNYPVGSALKVRVTGI--DLDKGHLDLSVK 1109

Query: 1043 AISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
            + S  + S  K ++       G ++   +T++   ++ ++      G +++T++ DD S 
Sbjct: 1110 SGSARDLSFDKLSR-------GMILPGRVTKVTEKQIIMQLSDTLVGAVNLTDMADDYSK 1162

Query: 1103 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS-------EIGSKLL 1155
            +   +   +K  + + A II        KK F   LS++PS +  S       EI S   
Sbjct: 1163 IDTTI---YKKNEILRACIIDLDKS--KKKIF---LSLRPSKVLSSTLPVRDREITSMDQ 1214

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             +  DV     V G+V +V +    +T+  ++ A + I D     S L+E++  F   + 
Sbjct: 1215 LKPNDV-----VRGFVRRVADNGLFVTLGHNVSAYIRISD--LSDSFLKEWKDEFQTDQL 1267

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-----HEGDIVGGRISKI 1270
            V G ++ ++ E   L++ L+            + + N +T I       G +V G++ K+
Sbjct: 1268 VKGRIILVDSENNRLQMSLKE----------SVLDPNFKTPITIRDLKVGQVVTGKVRKV 1317

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
                  +V+    ++ G  H +++    V            D    ++ G  VK K+L+I
Sbjct: 1318 EDFGAFIVIDGSANVSGLCHRSQMAEQNVQ-----------DARKLFEAGDIVKAKILKI 1366

Query: 1331 -SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1367
             +   + +F ++ S     +G  S   SD    +D  G
Sbjct: 1367 DANQGKVSFGLKASYFGDEEGSDSEGGSDGDLSMDEAG 1404



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 209/904 (23%), Positives = 401/904 (44%), Gaps = 116/904 (12%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPN 683
            +  G   K RI+          LSF  K    P    ED  V LG +V G ++  ++ P 
Sbjct: 500  FKTGSKHKARIIGYNSVDNLYLLSFEKKVIDQPYIRLED--VPLGEVVKGKIEKLLIGPE 557

Query: 684  AV--VVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
             +  ++  IA G + G +P+ H AD  L+H    +   + G     ++L ++ +   + L
Sbjct: 558  GIDGLILSIADGIT-GLVPSMHFADTVLQHP---EKKFREGLTVSARVLSVNLDKRQMRL 613

Query: 740  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            + K SL+NS   +  D + I P     G + NI   G  V+F G +  F P S+  +   
Sbjct: 614  TLKKSLLNSDSAIWKDYNDIVPGKQSPGTLINIQPNGATVQFYGTVRAFLPVSEMSEAYI 673

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 859
             D S+ +  GQ V  + + V++   ++ +S K     ST +   +E F  E +  +L   
Sbjct: 674  KDPSQHFRKGQVVNVHAISVDTAAEKLVVSCKDP---STSSEAYREAFG-EIRPGVL--- 726

Query: 860  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV 919
                     V G +     +  + + + +GV         V G       A A V  G  
Sbjct: 727  ---------VTGTVFEKSSDDLLLKLDKYGVTARLSAIHLVDGDAAKAASAFAKVRVGQK 777

Query: 920  I-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
            +    +L+  +  RL+ ++ K+          S R+A KK       ++L V   +   V
Sbjct: 778  LSDLLVLEAKRVHRLIKVTHKS----------SLRKALKKNSLPATFEELEVGTEITGFV 827

Query: 979  E-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
              I      V  L   N  +    V D +  K P       QS+ ATV  +   +   R 
Sbjct: 828  RGITSHGIFVEFLGGLNGLLPRRLVDDEHANK-PDFGLYRSQSLTATVHQIDEDNR--RF 884

Query: 1038 LLLLKAISETETSSSKRAKKK-------------------SSYDVGSLVQAEITEIKPLE 1078
             L ++ +     S  +++K+K                   + + +G + +A I  IK  +
Sbjct: 885  TLTMRPLELPTGSRPEQSKEKPLPEDEKLANPVDESIHTAADFTIGKVTKARIASIKETQ 944

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK----- 1127
            + +       GRI ++EV D   ++ +       F++ + +  RI+    A+S++     
Sbjct: 945  INVVLADNLQGRIDVSEVFDKWDDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFLPIS 1004

Query: 1128 PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1187
                K  ++ELS KPS ++ +E    L  E+  V +G  + G+V  V N++  +++S ++
Sbjct: 1005 HRTSKHPVYELSAKPSFISSAE-PKPLTLEQ--VKVGSSMIGFVNNVANDYLWVSLSPNV 1061

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
            + ++  +D + + S L + +  + +G A+   V  I+ +K  L L ++      S    D
Sbjct: 1062 RGRVRAIDLSDDLSTLADLESNYPVGSALKVRVTGIDLDKGHLDLSVK------SGSARD 1115

Query: 1248 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
            +S D +      G I+ GR++K+      +++Q+   L G V+ T++     +D  S  D
Sbjct: 1116 LSFDKLS----RGMILPGRVTKVTEK--QIIMQLSDTLVGAVNLTDM-----ADDYSKID 1164

Query: 1308 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1367
                   + Y + + ++  ++++ ++ +  F   LSLR S           LS+ +    
Sbjct: 1165 ------TTIYKKNEILRACIIDLDKSKKKIF---LSLRPS---------KVLSSTLPVRD 1206

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            + +  ++ L PN +V+G+V+ V   G F+ L   + A + +S+LSD +++  + EF   +
Sbjct: 1207 REITSMDQLKPNDVVRGFVRRVADNGLFVTLGHNVSAYIRISDLSDSFLKEWKDEFQTDQ 1266

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
            LV GR++ V+  + R++++LK S      ++ I  + +L VG +V G++++VE +G FI 
Sbjct: 1267 LVKGRIILVDSENNRLQMSLKESVLDPNFKTPI-TIRDLKVGQVVTGKVRKVEDFGAFIV 1325

Query: 1488 IENT 1491
            I+ +
Sbjct: 1326 IDGS 1329


>gi|302667984|ref|XP_003025570.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
 gi|291189685|gb|EFE44959.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
          Length = 1799

 Score =  199 bits (507), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 284/1203 (23%), Positives = 510/1203 (42%), Gaps = 109/1203 (9%)

Query: 189  VGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
            VGQ +   V   ++ +DD+K   K+ I LS+       GL+   +     + A V S+ED
Sbjct: 217  VGQYLRAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVVSVED 276

Query: 246  HGYILHFGLP--SFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDP 300
            HG ++  GL      GF+    L   +G+D   VK G +   +V   + +  V+ LS+D 
Sbjct: 277  HGLVMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVIKLSADL 334

Query: 301  DTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
             +              +I+  +PG      +  +   G++   +      VD+ H   + 
Sbjct: 335  ASAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGASD 394

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGL---TLNPYL-------LHNRAPPSHVKVG 408
               +    Y+   K+  R++   P+S  + L    L+  L       L N A      + 
Sbjct: 395  GKKDLTTKYHAGAKIKGRLITTYPSSDPIKLGFSILDSVLKFSPTATLVNGADDDLPSIS 454

Query: 409  DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRV 465
            DI  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS    
Sbjct: 455  DIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSIEGPYKVGSTHEG 512

Query: 466  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPG 520
            RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV    
Sbjct: 513  RIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTD 572

Query: 521  GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILS 578
             +  L P  HM++ ++  P KKF+ G ++  RVL V  + +++ +T KK+L+ S  A   
Sbjct: 573  SISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWK 632

Query: 579  SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
             Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV  
Sbjct: 633  DYESISAGSRSPGTLIKIQNNGAIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNV 692

Query: 639  RIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
              ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ +   G
Sbjct: 693  HALTVDAENERLVVS-CKDPSTVTADYQSAFENVHPGLVVSGTVFEKSSDDLLIKLQDSG 751

Query: 694  YSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ 750
                 + + H++D      T   + I+ G + D LLV   + S+ L+  + K +L  +A 
Sbjct: 752  LI-ARLTSNHISDGSATKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATLKEAAA 810

Query: 751  Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
            +  LP+    I     V G V NII  G FV FL  LTG  P+    D   +     Y  
Sbjct: 811  EGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHTSRPDFGYSR 870

Query: 809  GQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
             Q + + +  V  ++ R  LSLK     +    S+ AS        E+K   +  +    
Sbjct: 871  FQVISATVCAVQEDSDRFLLSLKPVSKPKQQSDSSSAS--------EKKAPAVVLNNPID 922

Query: 864  SELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLAGAT 913
             ELK +E  ++G + + K+    D    VV        +   E  D +  I   +    +
Sbjct: 923  EELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKS 982

Query: 914  VESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              S  ++   +L +  A+  + + +S +   +  +  +      Q  + K    + L V 
Sbjct: 983  FHSKEILPVRVLGIHDARNHKFLPISHRAGKVSVYELSTKRSCLQASEFKPLHLEQLKVG 1042

Query: 972  QTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALP 1029
            +     V  + E+ L L++ P     +    +S D + +   QK F  G ++   V  + 
Sbjct: 1043 ERYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVTGID 1102

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
            +     RL L  +  S  +T +     K      G ++   +T+I   ++ ++      G
Sbjct: 1103 AEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDNVVG 1154

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1149
             + + ++ DD + V     +NF   + +   ++   + P+ K  F    S++PS +  S 
Sbjct: 1155 AVSLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKICF----SVRPSKVLSSS 1206

Query: 1150 IG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
            +      +    ++ +GQ V G+V +VDN    +T+   + A  +I  S    S L+E++
Sbjct: 1207 LPVVDPEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLKEWK 1264

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
              F + + V G +  ++K+   +++ L+      + K      D     +  G IV G++
Sbjct: 1265 DEFQVDQLVQGRLTVVDKDNNKVQMTLKKSALDPNYKPPFTLKD-----LKVGQIVTGKV 1319

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1327
             K+      + +    +L G  H +E+    V D        Q      Y++   VK KV
Sbjct: 1320 RKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL-----YEKDDIVKAKV 1368

Query: 1328 LEI 1330
            L++
Sbjct: 1369 LKV 1371



 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 229/936 (24%), Positives = 402/936 (42%), Gaps = 136/936 (14%)

Query: 610  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 481  QGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 537

Query: 667  VKL-----GSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSV 717
             +L     GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +  
Sbjct: 538  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKK 594

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 595  FREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 654

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 655  AIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 714

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F                      E    G V+ G V E +   +++  ++
Sbjct: 715  TAD---YQSAF----------------------ENVHPGLVVSGTVFEKSSDDLLIKLQD 749

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 946
               +    ++H   G+  +  S +             +  V K+ RL++++ K       
Sbjct: 750  SGLIARLTSNHISDGSATKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL---- 805

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 1005
                  ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D 
Sbjct: 806  ------KEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 859

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA---- 1055
            +T + P   +   Q + ATV A+   S   R LL LK +S      ++ ++S K+A    
Sbjct: 860  HTSR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKPKQQSDSSSASEKKAPAVV 916

Query: 1056 ---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 1106
                     K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 917  LNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 976

Query: 1107 L--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1155
                 +F   + +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 977  KRPLKSFHSKEILPVRVLGIHDARNHKFLPISHRAGKVSVYELSTKRSCLQASEF-KPLH 1035

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E+  + +G+R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1036 LEQ--LKVGERYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1093

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V  I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1094 LQVAVTGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1142

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
             ++VQI  ++ G V   ++ +          D  + +P +      F K + L +     
Sbjct: 1143 QVLVQINDNVVGAVSLIDMAD----------DYTKVNPTN------FHKNEALRVCV--- 1183

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                V++ + +     S   S  LS+ +      +  I++L    IV+G+V+ V + G F
Sbjct: 1184 ----VDVDIPNKKICFSVRPSKVLSSSLPVVDPEITSIDNLKVGQIVRGFVRRVDNIGVF 1239

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            + L   + A + +S+LSD +++  + EF + +LV GR+  V+  + +V++TLK S +   
Sbjct: 1240 VTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKVQMTLKKS-ALDP 1298

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +      L +L VG IV G++++VE YG FI I+ +
Sbjct: 1299 NYKPPFTLKDLKVGQIVTGKVRKVEEYGAFIAIDGS 1334


>gi|427793247|gb|JAA62075.1| Putative rrna processing protein rrp5, partial [Rhipicephalus
           pulchellus]
          Length = 1840

 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 220/913 (24%), Positives = 398/913 (43%), Gaps = 83/913 (9%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEIEANED-- 180
           +T++ ++ G+ + G V +V E  L + LPG + G     +   P   +L    +  +D  
Sbjct: 81  LTIRLLAEGLVVLGRVQQVQEFGLRVSLPGAITGRVSLTNISQPYSLLLRQFAQGVQDRT 140

Query: 181 -NLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
             +LP   +F  GQ V C V+     +    K  + LSL  + +   ++   +Q+GMVL 
Sbjct: 141 TEILPLQKLFQEGQTVVCKVIAAAPVEWGSSKVSVELSLDPAAVNASMTPSVLQKGMVLQ 200

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRK 292
           A V SIEDHGY +  G+   T FL +          N+G  +  G L+   V +     +
Sbjct: 201 AAVSSIEDHGYTMDCGVDGVTAFLSQAEATPFIKQCNAGHALAVGQLVPCAVLTNTGGGR 260

Query: 293 VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 352
            + L++ P TV+  +  +L+  S+D ++PG      V      G+++S+     G     
Sbjct: 261 ALQLTARPSTVNAPL--ELENFSLDYVLPGFRAEVTVIESQSEGLVVSW----NGIEACV 314

Query: 353 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD 412
           H  +     +   D    + +   +L+V P      L   PYL   + P S    G I  
Sbjct: 315 HRSHLPGPWDSPEDITVGQTLVGTLLYVQP------LVQRPYLSLQK-PSSRAMFGAIRP 367

Query: 413 ------QSKVVRVDRG-LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 465
                  +KVV ++ G + L L+    P    A      VA+E+V         G  +  
Sbjct: 368 GALLEGAAKVVAIEAGAVHLRLE----PSGLRALCPRPLVADEDVEDARDFVTAGERLSC 423

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
           R++   +++ +    LK S       T   + PG   +  V  +   G +V     +   
Sbjct: 424 RVMALSYMDKVVVVSLKKSMLSEKYVTPDALVPGAKFECTVRQMQRSGILVSLSPWMAGF 483

Query: 526 CPLPHMSEFEIVKPGK-KFKVGAELVFRVLGVKSK----RITVTHKKTLVKSKLAILSSY 580
             + H+S      PG+ +  +G+ +  R+L V       R+ +T ++ LV SK  I++SY
Sbjct: 484 IQMLHVS-----GPGEEQPTLGSRVRCRLLNVDRSFDPPRLLLTCRRALVTSKRPIITSY 538

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
            +A    +T G I ++   G  V FYNG++G+ P  E+    G   +  Y  G+VV CR+
Sbjct: 539 DDAIPGKLTEGLIVRVTPQGLLVTFYNGIKGWVPSREMP-HSGHGTNVNYTEGKVVTCRV 597

Query: 641 MSSIPASRRINLSFMMKPTRVSEDD--------------LVKLGSLVSGVVDVVTPNAVV 686
           +   P+  R+ LS  + P    E++               +++G+LVSG V+        
Sbjct: 598 VDCQPSEERLTLSLKLAPKGEQEEEKQSAQEVTMSMKSGAMEVGTLVSGCVEAKVKGGFT 657

Query: 687 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
           V +  +     ++P +HL+D   H   ++ ++  G     L++  N S +L++S + SL+
Sbjct: 658 VRL--RTGESASLPKQHLSDFEPHCVRLQQLLAEGTNLTNLVIF-NSSESLVVSRRTSLV 714

Query: 747 NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
           N+AQ+  L S    + P ++V G +   +  G  +   G + GF P     D    D SK
Sbjct: 715 NAAQRGLLVSHFEDMAPGTLVFGVLLAFVRHGMLLELPGGIRGFVPLKDVADEFITDASK 774

Query: 805 T-YYVGQSVRSNILDVNSETGRITLSLK-QSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
           + + +GQ +   +  V+SE  ++ LS   +SC      S M       E +A   + +  
Sbjct: 775 SGFSIGQCLVGRVTKVDSEKQQVWLSTSMRSCGEKNFGSTM-------ECLAAQLTDEEL 827

Query: 863 GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA 922
            S L+  +   +GS+I   V + ++   +V  +   +V    T   + G  + SGS  +A
Sbjct: 828 ISRLEQTQVPNVGSIIRVTVQDVDEENQLVHCKIAENVLSG-TAETIPGRNIASGSTHEA 886

Query: 923 AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
            +L  + A   V+L L    +   R  ++ ++ +   R+ ++ + L  H   N  V ++ 
Sbjct: 887 VVLHCSTAHSNVELCLDPQVV---RSVSAAKRTKPVLRRIQSGRVL--HLKPNHAVVLLH 941

Query: 983 ENYLVLSLPEYNH 995
             +L L +P  +H
Sbjct: 942 SGHLCL-VPTKSH 953



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 74/389 (19%), Positives = 149/389 (38%), Gaps = 70/389 (17%)

Query: 1067 VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1126
            V A +  ++ L+L++    G+ GR+H++ + D+     E+    F+ G  +   +I +  
Sbjct: 1123 VMAIVRSVEKLQLKITLENGYKGRVHVSFI-DENPKEGESPLKRFEPGDQLEVYVIER-- 1179

Query: 1127 KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV----------SIGQRVTGYVYKVDN 1176
                         + P       I  +  F EC +          + G  V GY      
Sbjct: 1180 -------------VIPLHSRALAITGRRNFCECSLFPAEKNEFAPAPGSEVIGYFSHFSE 1226

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
               +  ++ +   +L +L+    PS L         G+AV   VL  ++       V+  
Sbjct: 1227 GSLVFALTHNKMGRLPVLNMDLPPSRLGYIHTELKAGQAVKVTVLRADESS-----VVEL 1281

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
             Q G++  +VD              +V G +    +GVG  V          +       
Sbjct: 1282 SQLGVTTLSVD-------------SVVNGYVVSARAGVGACV---------SLPLGHRGT 1319

Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
            I ++D    + +     ++ Y + ++++C +++I      T+H+            ST  
Sbjct: 1320 ISITDICDDFSQAA-TLMANYIQERYLRCYIIDIDSET-NTYHL------------STRE 1365

Query: 1357 SDLSTDV--DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
            S L  +   D   K +  +  L+    ++G+VK V   GCF+ +   +   + LS L   
Sbjct: 1366 SRLHPESCKDVEDKEIVALSSLTVGTTLRGFVKTVNKHGCFVTVGCGVVGLIPLSKLP-A 1424

Query: 1415 YVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            +++   K   IG+LV+  V  ++   +R+
Sbjct: 1425 HLQRSHKAMKIGELVSVVVKKIQASERRL 1453


>gi|294659326|ref|XP_461694.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
 gi|199433877|emb|CAG90142.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
          Length = 1716

 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 183/690 (26%), Positives = 332/690 (48%), Gaps = 38/690 (5%)

Query: 182 LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
           +L  IF +GQ +   V++   D K   K++I LS+   ++   L  E +  G +L   +K
Sbjct: 181 VLKEIFKIGQWLRAKVVKPSSDSK---KKRIQLSIEPEVVNATLEDEDLTPGNLLQCSIK 237

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGI---DVKPGLLLQGVVRSIDRTRKVVYLSS 298
           SIEDHG IL+ G  +F+GF+    L  +  I   D+  G +L   + S   +R +     
Sbjct: 238 SIEDHGVILNVGRSNFSGFISNKELKNSKDIEAEDLNVGDVLLTSIVSKPSSRTITLRPV 297

Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
             ++ SK  +      S+D + PG++V   V  I +NG++         T+++ +L N F
Sbjct: 298 QSNSTSKKASVSTIS-SVDSIEPGILVDALVSDITKNGIVTKVFGLVDATINLPNL-NDF 355

Query: 359 PTTNWKNDYNQHKKVNARI--LFVDPTSRAVGLTLNPYLLHNRAPPSHVK-------VGD 409
                K+ Y     + AR+  + +   ++ + L+  P+++   + PS          +G 
Sbjct: 356 DLQTLKHKYTIGNNIKARVTGILLKSGTKRLMLSQLPHIISFSSSPSDDSSALDAFPIGH 415

Query: 410 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           I+++ +V   D    + +   S+ +    + +  D +    + LE  Y  GS  + R++G
Sbjct: 416 IFEEVEVKGSDPNY-VFVGFGSSTLHGQVHNSKIDPS----KNLEIDYSVGSKHKARVIG 470

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALC 526
           +  +E L    ++    +    T  D+  G  V G +++ V  DS G IV+   G +AL 
Sbjct: 471 YNSIENLLVLTMEPKVIDSKFLTTDDIPVGEFVNGAEIVKVLPDSGGIIVKILNGFEALV 530

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATD 585
           P  HMS+  +V P +KFKVG ++  RVL  + +++  T KK+LV      IL+ + +AT 
Sbjct: 531 PGNHMSDVRLVYPERKFKVGGKVKGRVLRKQGRKLFFTLKKSLVNIEDDEILTGFDKATV 590

Query: 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
              +   + K   +G  V F+  ++ + P++E+      + S    +GQ V  +I++   
Sbjct: 591 GFKSPATVEKFVHNGAIVSFFGNLRAYLPKNEISETFVNQASDHLKIGQTVNVKILNVNK 650

Query: 646 ASRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
             +R+ ++      +    + +  DL    S+ + +V      +V+V  +     +G I 
Sbjct: 651 DDQRLMVTLRQSIDLSDSQKATISDLYPGKSITTAIVVEKVKESVIVE-LENSNLRGVIF 709

Query: 701 TEHLAD-HLEHATVMKSVIKPGYEFDQL-LVLDNESSNLLLSAKYSLINSAQQ--LPSDA 756
           + HL+D + E    +   +  G + D L L  D +S ++ +SAK SLI +A+Q  +P+  
Sbjct: 710 SGHLSDGNYEQNRSIFKKLPIGDKIDVLVLEKDLKSRSVTVSAKASLIEAAKQDEVPAYF 769

Query: 757 SHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
             I   N ++HGY+ ++   G F+ F G+LTG      A D    DLSK +Y  QSV   
Sbjct: 770 KDIKVDNKMLHGYIKSVTNMGLFISFAGKLTGLVLAKYATDKPDEDLSKKFYKYQSVSCR 829

Query: 816 ILDVNSETGRITLSLKQSCCSSTDASFMQE 845
           ++ ++ E  R  LSLK+S  +S D+S  +E
Sbjct: 830 VIRIDEENKRFLLSLKKS-ENSKDSSNTEE 858



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 234/1068 (21%), Positives = 429/1068 (40%), Gaps = 188/1068 (17%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PG++V   V  +   G + +  G V A   LP++++F++     K+ +G  +  RV G
Sbjct: 317  IEPGILVDALVSDITKNGIVTKVFGLVDATINLPNLNDFDLQTLKHKYTIGNNIKARVTG 376

Query: 556  V----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG-----CFVRF- 605
            +     +KR+ ++    ++    +  S  + A D         ++E  G      FV F 
Sbjct: 377  ILLKSGTKRLMLSQLPHIISFSSS-PSDDSSALDAFPIGHIFEEVEVKGSDPNYVFVGFG 435

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINLSFMMKPTRVSE 663
             + + G    S++  DP       Y VG   K R++  +SI     + +   +  ++   
Sbjct: 436  SSTLHGQVHNSKI--DPSKNLEIDYSVGSKHKARVIGYNSIENLLVLTMEPKVIDSKFLT 493

Query: 664  DDLVKLGSLVSG--VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
             D + +G  V+G  +V V+  +  ++  I  G+ +  +P  H++D          ++ P 
Sbjct: 494  TDDIPVGEFVNGAEIVKVLPDSGGIIVKILNGF-EALVPGNHMSD--------VRLVYPE 544

Query: 722  YEFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY-------- 768
             +F      +  VL  +   L  + K SL+N           I  + ++ G+        
Sbjct: 545  RKFKVGGKVKGRVLRKQGRKLFFTLKKSLVN-----------IEDDEILTGFDKATVGFK 593

Query: 769  ----VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
                V   +  G  V F G L  + P+++  +      S    +GQ+V   IL+VN +  
Sbjct: 594  SPATVEKFVHNGAIVSFFGNLRAYLPKNEISETFVNQASDHLKIGQTVNVKILNVNKDDQ 653

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            R+ ++L+QS                   I +  S K   S+L   +      V+E KV E
Sbjct: 654  RLMVTLRQS-------------------IDLSDSQKATISDLYPGKSITTAIVVE-KVKE 693

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLV 934
            S    V+V  E +S++ G I    L+    E           G  I   +L+     R V
Sbjct: 694  S----VIVELE-NSNLRGVIFSGHLSDGNYEQNRSIFKKLPIGDKIDVLVLEKDLKSRSV 748

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEY 993
             +S K   I          +A K+       KD+ V ++ ++  ++ V    L +S    
Sbjct: 749  TVSAKASLI----------EAAKQDEVPAYFKDIKVDNKMLHGYIKSVTNMGLFISFAGK 798

Query: 994  NHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 1053
               +  A  +     +   K+F   QSV   V+ +   +   R LL LK    ++ SS+ 
Sbjct: 799  LTGLVLAKYATDKPDEDLSKKFYKYQSVSCRVIRIDEENK--RFLLSLKKSENSKDSSNT 856

Query: 1054 RA------KKKSS---YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND------ 1098
                     +KS+   Y  G +  A +  IK  +L ++      GR+ IT+  +      
Sbjct: 857  EEVINPIDSEKSTVGDYTPGVITSAVVKSIKGTQLNVQLADNLQGRVDITQCFNSWSEIK 916

Query: 1099 DKSNVVENLFSNFKIGQTVTARIIAKSNK------PDMKKSFLWELSIKPSMLTVSEIGS 1152
            DK   +     N KI   V     AK+++          K+ + ELSI    L   +   
Sbjct: 917  DKKQPLSQFHKNDKIKVKVIGFHDAKTHRFLPITHRKSNKNIVLELSILEKELKTPDEPY 976

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
             +L    + S G +   Y+  V   +  ++I+  +K ++  ++ + + S   + + +  I
Sbjct: 977  HML-NLSNTSEGSKWVAYINNVAKGFVWVSITPTIKGRISFMELSDDVSVFDDIENKLPI 1035

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKI 1270
            G A+   V  I+ +   + L  R              N  M T   +  GD +  R+ K+
Sbjct: 1036 GMAIEATVKDIDNDHNTVVLSAR--------------NSTMGTVKDVKVGDKLPARVLKV 1081

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
                  ++V++G +L      T        D L+ Y E   +     D   F    VL +
Sbjct: 1082 RDTF--VLVELGKNLVASSFIT--------DALNDYTEKLENVFHTND---FCTATVLAV 1128

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                +    + +SLR+                 D   K ++ IEDL+   I++G+VKNV 
Sbjct: 1129 DEESK---KIAVSLRND----------------DATDKVIDSIEDLNRGDIIRGFVKNVA 1169

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            + G +I L R + A V +++LSD +++  +K F   + + G++ S +    R+ +TLK  
Sbjct: 1170 NNGVYIALGRSIHALVRITDLSDSFLKDWKKYFKPHQPIIGKISSCKE-EGRILMTLK-- 1226

Query: 1451 DSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                  +SEIN          +L VG+I  G ++RV  +G FI ++ T
Sbjct: 1227 ------ESEINGELNVLKKFEDLEVGEIFEGSVRRVTDFGAFIKLDGT 1268



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 38/225 (16%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
            +L +D ES  + +S +    ++  ++      ++   ++ G+V N+   G ++     + 
Sbjct: 1125 VLAVDEESKKIAVSLRND--DATDKVIDSIEDLNRGDIIRGFVKNVANNGVYIALGRSIH 1182

Query: 787  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
                 +   D    D  K +   Q +   I     E GRI ++LK+S             
Sbjct: 1183 ALVRITDLSDSFLKDWKKYFKPHQPIIGKISSCKEE-GRILMTLKESEI----------- 1230

Query: 847  FLLEEKIAMLQSSKHNG--SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
                           NG  + LK  E   +G + EG V    DFG  +  +   ++ G  
Sbjct: 1231 ---------------NGELNVLKKFEDLEVGEIFEGSVRRVTDFGAFIKLDGTVNISGLC 1275

Query: 905  THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVF 942
             H Q++   VE+       G  ++  IL + + ++ + L +K  +
Sbjct: 1276 HHSQISDNDVENVSSLFGEGDRVKVKILAIDQEKKQLSLGMKASY 1320


>gi|322704015|gb|EFY95615.1| rRNA biogenesis protein RRP5, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 1795

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 231/893 (25%), Positives = 389/893 (43%), Gaps = 88/893 (9%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
           +A S K  + S  D P+  K+   + +  K   NDA     +     ++ P+FPRGGG  
Sbjct: 18  SAKSTKQGRPSKTDAPEIAKSKTAKTQPKKTSDNDARPKAPVVSLLKNEEPIFPRGGGSV 77

Query: 62  LTQRERDEIHAEVDAEFEAVER-----GLHKKNKKKKKKTERKANETVDDLGSLFGDGIS 116
           LT  E  +I  E  A+    E      G  +K  KK+K + +  N + ++  S   D + 
Sbjct: 78  LTPLEHKQIQLEAKADARREEEFDTRGGKAQKIPKKRKVSVKGGNRSAENKDS--EDFVK 135

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE 176
                    +  K +  G  + G +  +N  DL + LP  L G      A+   L N ++
Sbjct: 136 ------VESLNFKKLVKGSLVLGQITRINNLDLEVALPNNLTGHVSVV-AVSEQLTNRVQ 188

Query: 177 ANE--------------DNLLPTIFHVGQLVSCIVLQLDDDKKEIG----KRKIWLSLRL 218
                            D  L ++F VGQ +   V+   D+   IG    KRKI LSLR 
Sbjct: 189 EAAAEQDDEEDESSDETDVDLKSMFVVGQYLRVYVVSTMDESA-IGNGKNKRKIELSLRP 247

Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL 278
           +    GL  + +     + A V S+ED G ++  G+P    FLP   +  +S ID     
Sbjct: 248 TETNSGLGKDDIVANSTVMASVVSVEDRGCVMDVGIPDLRAFLPHGEI--DSTID--QSR 303

Query: 279 LLQGVVRSIDRTRKV-----VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
           L +G V     T KV       LS     +        +  +I+  +PG  V   + +  
Sbjct: 304 LQEGSVFLCQVTGKVSNGNVAQLSLQQKKLGSPKDIPTEATTINTFLPGTNVDVLITNTD 363

Query: 334 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTL 391
             G+    + +   T D+ H       T+ +  Y    KV AR++   PT++    G++L
Sbjct: 364 RRGLAGKVIGHLDVTADLVHSGAGPLGTDLEATYKVGSKVKARVICNFPTAKEPKFGISL 423

Query: 392 NPYLL----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 441
            P++           +   P   + +  + ++  V RV+  +GL +D     +    +V 
Sbjct: 424 LPHITSLTRKHPAKDNKNLPTEALPISSLVEKCTVRRVESEIGLFVDTGIAGLG--GFVH 481

Query: 442 ISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 498
           IS V + +V  L +    Y+ GS  + R++G+  L+G      + S  +       DV  
Sbjct: 482 ISRVKDGKVDALYESSGPYQVGSVHKGRVVGYSELDGQFHLSFEKSILDQQYIRMEDVPI 541

Query: 499 GMVVKGK----VIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           G V+  +    VI  +   G I+    G+       H+S+ ++  P KKF+ G ++  RV
Sbjct: 542 GAVITCEIEKLVIKEEGVRGLILNIADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARV 601

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L     +K I  T KKTLV S   ++ S+ +A   L   G I K++ +G  ++FY  ++G
Sbjct: 602 LSTNPFTKEIRFTLKKTLVNSDAPVIKSHEDAIVGLQVPGTIIKLQPNGAHIQFYGRLKG 661

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSED 664
           F P SE+      +P+  + +GQVV   I+   P  RR+ +S        + K T +   
Sbjct: 662 FLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRRLIVSCKDPGAFGLDKQTALKN- 720

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGY 722
             ++LG LV+  V   T + V V ++     K  +P  HL D    ++   +K  I  G 
Sbjct: 721 --LRLGELVAAKVTQKTEDQVFVELVDSQL-KAILPVGHLTDKSASKNQFALKR-ISAGQ 776

Query: 723 EFDQLLVLD-NESSN-LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCF 778
               L+VLD NE    ++L+ K SLI ++++  L S+       ++V  +V N+ +T  F
Sbjct: 777 TLSDLMVLDKNEKRRAIILTQKPSLIKASKEGKLISNFEDAKQGTIVPAFVRNVTQTAVF 836

Query: 779 VRFLGRLTGFAPRSK-AVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           V+F G L+   P+S+   D Q + D     Y  +S+   I+ V ++  RI ++
Sbjct: 837 VQFAGNLSALLPKSRLPADVQSKPDFGMHKY--ESIEVKIVSVINDLRRIMVA 887



 Score =  130 bits (326), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 204/920 (22%), Positives = 399/920 (43%), Gaps = 137/920 (14%)

Query: 620  LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGV 676
            +D   E S  Y VG V K R++       + +LSF   ++    +  +D V +G++++  
Sbjct: 490  VDALYESSGPYQVGSVHKGRVVGYSELDGQFHLSFEKSILDQQYIRMED-VPIGAVITCE 548

Query: 677  VD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLD 731
            ++  V+    V  ++  IA G + G +   HL+D  L+H    +   + G +    ++  
Sbjct: 549  IEKLVIKEEGVRGLILNIADGIT-GYVAERHLSDIKLQHP---EKKFRKGMKVKARVLST 604

Query: 732  NE-SSNLLLSAKYSLINSAQQLPSDASHI--HPNSVV----HGYVCNIIETGCFVRFLGR 784
            N  +  +  + K +L+NS      DA  I  H +++V     G +  +   G  ++F GR
Sbjct: 605  NPFTKEIRFTLKKTLVNS------DAPVIKSHEDAIVGLQVPGTIIKLQPNGAHIQFYGR 658

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            L GF P S+  +    D ++ + +GQ V  +IL V+ E  R+ +S K             
Sbjct: 659  LKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRRLIVSCKDPGA--------- 709

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
              F L+++ A+              +   +G ++  KV +  +  V V   + S +   +
Sbjct: 710  --FGLDKQTAL--------------KNLRLGELVAAKVTQKTEDQVFVELVD-SQLKAIL 752

Query: 905  ----------THHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREAN--S 951
                      + +Q A   + +G  +    +LD  +  R + L+ K   I   +E    S
Sbjct: 753  PVGHLTDKSASKNQFALKRISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKEGKLIS 812

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
            N +  K+     A     V       V +     L   LP+        S  D+   K+ 
Sbjct: 813  NFEDAKQGTIVPAF----VRNVTQTAVFVQFAGNLSALLPKSRLPADVQSKPDFGMHKYE 868

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKA----ISETETSSSKRAKKKSSYDVGSLV 1067
              +      +++ +  L       R +++  A    I  TE    K +      + G++V
Sbjct: 869  SIEV----KIVSVINDL-------RRIMVAHATAAPIEVTEKQKDKVSAPADGLEFGTVV 917

Query: 1068 QAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIAK 1124
             A IT +K  +L ++       GR+ +++V D   ++ +       F   Q +  ++I  
Sbjct: 918  TAVITSVKETQLNVQLTDTQVQGRVDVSQVFDQWEDITDPKKPLDKFHRKQQIEVKVIGV 977

Query: 1125 SNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
             +  D +  FL           ELS K S +   E  + L  E   + +G     YV  V
Sbjct: 978  HDAKDHR--FLPISHRSAHSVLELSAKNSDVE-GENPNTLSLES--LKVGDSHIAYVNNV 1032

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
              ++  + +S  ++ ++  ++++ + S L + +  F +G A+   V  I+ EK  L L  
Sbjct: 1033 TPQFLWVNLSPSVRGRVSAMEASDDLSLLNDLEANFPVGSALKVRVKFIDAEKNRLDLSA 1092

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
            R   D    + VD       T + +  ++ G+I+K+      L+V++   + G VH  ++
Sbjct: 1093 RSSTDS---QGVD------WTSLKQNMVLPGKITKV--NERQLMVKLSDIVSGPVHLPDM 1141

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
             +         YD+   + L+ Y + Q ++  ++E+     G   + LS+R S       
Sbjct: 1142 AD--------DYDD--INTLN-YKKNQIIRVAIVEVDA---GNKRLRLSMRPS------- 1180

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
                LS+ +    K +  +  ++   +V+G+VKNV+ KG F+ L   + A V ++NLSD 
Sbjct: 1181 --RILSSTLPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGGHVTALVKIANLSDR 1238

Query: 1415 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1474
            +++  +  F + +LV GRVLSV+   K+VE++LK S +     + +   +++  G +V G
Sbjct: 1239 FLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLKAS-AVDEDYTPLVTYNDIKKGSVVTG 1297

Query: 1475 QIKRVESYGLFITIENTNLV 1494
            ++++VE +G FI ++ ++ V
Sbjct: 1298 KVRKVEEFGAFILVDKSSNV 1317



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 191/908 (21%), Positives = 338/908 (37%), Gaps = 158/908 (17%)

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
             G  +   +G+ G+     L       P   +  G  VK R++S+ P ++ I   F +K 
Sbjct: 560  RGLILNIADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARVLSTNPFTKEIR--FTLKK 617

Query: 659  TRVSEDDLVK-------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-----D 706
            T V+ D  V        +G  V G +  + PN    ++   G  KG +P   ++     D
Sbjct: 618  TLVNSDAPVIKSHEDAIVGLQVPGTIIKLQPNGA--HIQFYGRLKGFLPVSEMSEAYIRD 675

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK----YSLINSAQQLPSDASHIHPN 762
              EH  + + V         +L +D E   L++S K    + L        +   ++   
Sbjct: 676  PNEHFRIGQVVSV------HILHVDPEQRRLIVSCKDPGAFGLDKQ-----TALKNLRLG 724

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNS 821
             +V   V    E   FV               VD Q +A L   +   +S   N   +  
Sbjct: 725  ELVAAKVTQKTEDQVFVEL-------------VDSQLKAILPVGHLTDKSASKNQFALK- 770

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
               RI+     S     D +  +   +L +K +++++SK  G  +   E    G+++   
Sbjct: 771  ---RISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKE-GKLISNFEDAKQGTIVPAF 826

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESG--------SVIQAAILDVAKAERL 933
            V       V V F    ++   +   +L  A V+S           I+  I+ V    R 
Sbjct: 827  VRNVTQTAVFVQFA--GNLSALLPKSRLP-ADVQSKPDFGMHKYESIEVKIVSVINDLRR 883

Query: 934  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIVKENYLVLSLPE 992
            + ++  T        A      +K+K K  A  D L     V A++  VKE  L + L +
Sbjct: 884  IMVAHAT--------AAPIEVTEKQKDKVSAPADGLEFGTVVTAVITSVKETQLNVQLTD 935

Query: 993  YNHSIGYASVS-------DYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTAGR 1036
                 G   VS       D    K P  +F   Q +   V+          LP S  +  
Sbjct: 936  -TQVQGRVDVSQVFDQWEDITDPKKPLDKFHRKQQIEVKVIGVHDAKDHRFLPISHRSAH 994

Query: 1037 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
             +L L A +      +       S  VG    A +  + P  L +       GR+   E 
Sbjct: 995  SVLELSAKNSDVEGENPNTLSLESLKVGDSHIAYVNNVTPQFLWVNLSPSVRGRVSAMEA 1054

Query: 1097 NDDKSNVVENLFSNFKIGQTVTAR---IIAKSNKPDM-------KKSFLWELSIKPSMLT 1146
            +DD S ++ +L +NF +G  +  R   I A+ N+ D+        +   W  S+K +M+ 
Sbjct: 1055 SDDLS-LLNDLEANFPVGSALKVRVKFIDAEKNRLDLSARSSTDSQGVDW-TSLKQNMV- 1111

Query: 1147 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
                                + G + KV+    ++ +S  +   + + D A +  ++   
Sbjct: 1112 --------------------LPGKITKVNERQLMVKLSDIVSGPVHLPDMADDYDDINTL 1151

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVG 1264
               +   + +   ++ ++   K LRL +RP +  I   T+ +++  +     +  GD+V 
Sbjct: 1152 N--YKKNQIIRVAIVEVDAGNKRLRLSMRPSR--ILSSTLPVADKEIANLSQVAAGDVVR 1207

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1324
            G +  +     GL V +G H+   V    L +  + D     D  Q D        Q VK
Sbjct: 1208 GFVKNVSD--KGLFVALGGHVTALVKIANLSDRFLKD---WKDLFQVD--------QLVK 1254

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
             +VL +   ++    VE+SL++S               VD     L    D+    +V G
Sbjct: 1255 GRVLSVDSALK---QVEMSLKASA--------------VDEDYTPLVTYNDIKKGSVVTG 1297

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
             V+ V   G FI++ +  +   L   S ++D  V+   K +  G  V   VL V+ + +R
Sbjct: 1298 KVRKVEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRR 1357

Query: 1443 VEVTLKTS 1450
            +   L+ S
Sbjct: 1358 ISFGLRPS 1365



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 38/236 (16%)

Query: 730  LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D  +  L LS + S I S+  LP      ++ S +    VV G+V N+ + G FV   G
Sbjct: 1166 VDAGNKRLRLSMRPSRILSST-LPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGG 1224

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
             +T     +   D    D    + V Q V+  +L V+S   ++ +SLK        AS +
Sbjct: 1225 HVTALVKIANLSDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLK--------ASAV 1276

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
             E +                + L        GSV+ GKV +  +FG  +  ++ S+V G 
Sbjct: 1277 DEDY----------------TPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKSSNVSGL 1320

Query: 904  ITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
                Q+A   V       + G  ++A +L+V   +R +   L+    D   +  SN
Sbjct: 1321 CHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLRPSLFDEDTDMESN 1376



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 168/386 (43%), Gaps = 46/386 (11%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGIDV 274
            LSLE+++ G    AYV ++      ++   PS  G +            N+L  N  +  
Sbjct: 1014 LSLESLKVGDSHIAYVNNVTPQFLWVNLS-PSVRGRVSAMEASDDLSLLNDLEANFPV-- 1070

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
              G  L+  V+ ID  +  + LS+   T S+ V  D   +  ++++PG     ++  + E
Sbjct: 1071 --GSALKVRVKFIDAEKNRLDLSARSSTDSQGV--DWTSLKQNMVLPG-----KITKVNE 1121

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
              +M+      +G V +  + + +   N  N Y +++ +   I+ VD  ++ + L++ P 
Sbjct: 1122 RQLMVKLSDIVSGPVHLPDMADDYDDINTLN-YKKNQIIRVAIVEVDAGNKRLRLSMRPS 1180

Query: 395  LLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
             + +   P         S V  GD+         D+GL + L    T     A V I+++
Sbjct: 1181 RILSSTLPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGGHVT-----ALVKIANL 1235

Query: 446  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVV 502
            ++  ++  +  ++    V+ R+L            LKASA +     + T++D+K G VV
Sbjct: 1236 SDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVV 1295

Query: 503  KGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG---AELVFRVLGVK 557
             GKV  V+ FGA  +V     V  LC    M++  +    K +K G     LV  V  VK
Sbjct: 1296 TGKVRKVEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVK 1355

Query: 558  SKRITVTHKKTLVKSKLAILSSYAEA 583
             +RI+   + +L      + S+ ++A
Sbjct: 1356 -RRISFGLRPSLFDEDTDMESNDSDA 1380



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 6/175 (3%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S V  G VV+G V  V   G  V   G V AL  + ++S+  +      F+V   +  RV
Sbjct: 1198 SQVAAGDVVRGFVKNVSDKGLFVALGGHVTALVKIANLSDRFLKDWKDLFQVDQLVKGRV 1257

Query: 554  LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGV 609
            L V S  K++ ++ K + V      L +Y +     +  G + K+E+ G F+     + V
Sbjct: 1258 LSVDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKSSNV 1317

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
             G   RS++  +   + + +Y  G  VK  ++      RRI  SF ++P+   ED
Sbjct: 1318 SGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRI--SFGLRPSLFDED 1370



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 169/420 (40%), Gaps = 76/420 (18%)

Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
            G  G +HI+ V D K + +      +++G     R++  S   ++   F   LS + S+L
Sbjct: 475  GLGGFVHISRVKDGKVDALYESSGPYQVGSVHKGRVVGYS---ELDGQF--HLSFEKSIL 529

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYK--VDNEWA---LLTISRHLKAQLFILDSAYEP 1200
                I  +      DV IG  +T  + K  +  E     +L I+  +    ++ +     
Sbjct: 530  DQQYIRME------DVPIGAVITCEIEKLVIKEEGVRGLILNIADGITG--YVAERHLSD 581

Query: 1201 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1260
             +LQ  +++F  G  V   VLS N   K +R  L+        KT+ +++D      HE 
Sbjct: 582  IKLQHPEKKFRKGMKVKARVLSTNPFTKEIRFTLK--------KTL-VNSDAPVIKSHED 632

Query: 1261 DIVGGRISKILSGVGGLVVQIGPH-----LYGRVHFTELKNICVSDPLSGYDEGQF-DPL 1314
             IVG ++        G ++++ P+      YGR     LK      P+S   E    DP 
Sbjct: 633  AIVGLQVP-------GTIIKLQPNGAHIQFYGR-----LKGFL---PVSEMSEAYIRDPN 677

Query: 1315 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1374
              +  GQ V   +L          HV+   R  +  +S  +      D  T  K+L   E
Sbjct: 678  EHFRIGQVVSVHIL----------HVDPEQRRLI--VSCKDPGAFGLDKQTALKNLRLGE 725

Query: 1375 DLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
                  +V   V   T    F+ ++  +L A + + +L+D    + + +F + ++ AG+ 
Sbjct: 726  ------LVAAKVTQKTEDQVFVELVDSQLKAILPVGHLTDK--SASKNQFALKRISAGQT 777

Query: 1434 LS----VEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFI 1486
            LS    ++   KR  + L    S   +  E   I+N  +   G IV   ++ V    +F+
Sbjct: 778  LSDLMVLDKNEKRRAIILTQKPSLIKASKEGKLISNFEDAKQGTIVPAFVRNVTQTAVFV 837


>gi|322698144|gb|EFY89917.1| rRNA biogenesis protein RRP5, putative [Metarhizium acridum CQMa
           102]
          Length = 1796

 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 225/892 (25%), Positives = 388/892 (43%), Gaps = 84/892 (9%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
           +A + K  + S  + P+  K+   + +  K   NDA     +     ++ P+FPRGGG  
Sbjct: 18  SAKNTKQGRPSKTNAPEIAKSKTAKTQPKKTSDNDARPKAPVVSLLKNEEPIFPRGGGSI 77

Query: 62  LTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPR 121
           LT  E  +I  E  A+    E    +  K +K   +RK         SL G   S +   
Sbjct: 78  LTPLEHKQIQLEAKADARREEEFDTRGGKAQKIPKKRKV--------SLKGGKTSAEEKD 129

Query: 122 YAN-----KITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE 176
             +      +  K +  G  + G +  +N  DL + LP  L G      A+   L N ++
Sbjct: 130 SEDFVKVESLNFKKLVKGSLVLGQITRINNLDLEVALPNNLTGHVSVV-AVSEQLTNRVQ 188

Query: 177 ANE--------------DNLLPTIFHVGQLVSCIVLQLDD-----DKKEIGKRKIWLSLR 217
                            D  L ++F VGQ +   V+   D     D K   KRKI LSLR
Sbjct: 189 EAAAEQDDEEDESSDETDVDLKSMFVVGQYLRVYVVSTMDESAIGDGKNKTKRKIELSLR 248

Query: 218 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---V 274
            +    GL  + +     + A V S+ED G ++  G+P    FLP   +  +S ID   +
Sbjct: 249 PTETNSGLGKDDIVANSTVMASVVSVEDRGCVMDVGIPHLRAFLPHGEV--DSTIDQSRL 306

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
           + G +    V        VV LS     +        +  +I+  +PG  V   + +I  
Sbjct: 307 QEGSVFLCQVTGKGSNGNVVQLSLQQKKLGSLKDVPTEATTINAFLPGTNVDVLITNIDR 366

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLN 392
            G+    + +   T D+ H       T+ +  Y    KV AR++   PT++   +G++L 
Sbjct: 367 RGLAGKVIGHLDVTADLVHSGAGPNGTDLEATYKVGSKVKARVVCNFPTAKEPKLGISLL 426

Query: 393 PYLL----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 442
           P++           +   P   + +  + ++  V RV+  +GL +DI    +    +V I
Sbjct: 427 PHITSLTRKHPAKDNKTLPTEALPISSLVEKCTVRRVESEIGLFVDIGIAGLG--GFVHI 484

Query: 443 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           S V + +V  L +    Y+ GS  + R++G+  L+G      + S  +       DV  G
Sbjct: 485 SRVKDGKVDALYESSGPYQLGSVHKGRVVGYSELDGQFHLSFEKSILDQQYIRMEDVPVG 544

Query: 500 MVVKGK----VIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            V+  +    VI  +   G I++   G+       H+S+ ++  P KKF+ G ++  RVL
Sbjct: 545 AVITCEIEKLVIKEEGVRGLILKIADGITGYVAERHLSDIKLQHPEKKFREGMKVKARVL 604

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
                 K+I  T KKTLV S   ++ S+ +A   L   G I K++ +G  ++FY  ++GF
Sbjct: 605 STNPFKKQIRFTLKKTLVNSDAPVIKSHEDAVVGLQVPGTIIKLQPNGAHIQFYGRLKGF 664

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDD 665
            P SE+      +P+  + +GQVV   I+   P  RR+ +S        + K T +    
Sbjct: 665 LPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRRLIVSCKDPGAFGLDKQTALKN-- 722

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYE 723
            +K+G +V+  V   T + + V ++     K  +P  HL D    ++   +K V   G  
Sbjct: 723 -LKVGEMVAAKVTQKTEDQIFVELVDSQL-KAILPVGHLTDKSPSKNQFALKRV-SAGQT 779

Query: 724 FDQLLVLD-NESSN-LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFV 779
              L+V+D NE    ++L+ K SLI ++++  L S+      +++V  +V N+ +T  FV
Sbjct: 780 LSDLMVIDKNEKRRAIILTQKPSLIKASKEGKLLSNFDDAKQDAIVPAFVRNVTQTAVFV 839

Query: 780 RFLGRLTGFAPRSK-AVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           +F   L    P+S+   D Q + D     Y  +S+   I+ V ++  RI ++
Sbjct: 840 QFAHNLYALLPKSRLPADAQSKPDFGMHKY--ESIEVKIISVINDLRRIMVA 889



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 237/1062 (22%), Positives = 447/1062 (42%), Gaps = 167/1062 (15%)

Query: 488  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA--LCPLPHMSEFEIVKPGKKFKV 545
            G V  H DV   +V  G         A  +    VKA  +C  P           K+ K+
Sbjct: 371  GKVIGHLDVTADLVHSGAGPNGTDLEATYKVGSKVKARVVCNFPT---------AKEPKL 421

Query: 546  GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCFVR 604
            G  L+  +  + +++      KTL    L I S        L+    + ++E   G FV 
Sbjct: 422  GISLLPHITSL-TRKHPAKDNKTLPTEALPISS--------LVEKCTVRRVESEIGLFVD 472

Query: 605  F-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMK 657
                G+ GF   S +    +D   E S  Y +G V K R++       + +LSF   ++ 
Sbjct: 473  IGIAGLGGFVHISRVKDGKVDALYESSGPYQLGSVHKGRVVGYSELDGQFHLSFEKSILD 532

Query: 658  PTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHAT 712
               +  +D V +G++++  ++  V+    V  ++  IA G + G +   HL+D  L+H  
Sbjct: 533  QQYIRMED-VPVGAVITCEIEKLVIKEEGVRGLILKIADGIT-GYVAERHLSDIKLQHP- 589

Query: 713  VMKSVIKPGYEFDQLLVLDNE-SSNLLLSAKYSLINSAQQLPSDASHI--HPNSVV---- 765
              +   + G +    ++  N     +  + K +L+NS      DA  I  H ++VV    
Sbjct: 590  --EKKFREGMKVKARVLSTNPFKKQIRFTLKKTLVNS------DAPVIKSHEDAVVGLQV 641

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
             G +  +   G  ++F GRL GF P S+  +    D ++ + +GQ V  +IL V+ E  R
Sbjct: 642  PGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRR 701

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            + +S K               F L+++ A+              +   +G ++  KV + 
Sbjct: 702  LIVSCKDPGA-----------FGLDKQTAL--------------KNLKVGEMVAAKVTQK 736

Query: 886  NDFGVVVSFEEHSDVYGFI----------THHQLAGATVESGSVI-QAAILDVAKAERLV 934
             +  + V   + S +   +          + +Q A   V +G  +    ++D  +  R +
Sbjct: 737  TEDQIFVELVD-SQLKAILPVGHLTDKSPSKNQFALKRVSAGQTLSDLMVIDKNEKRRAI 795

Query: 935  DLSLKTVFIDRFREAN--SNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 992
             L+ K   I   +E    SN        K++A     V       V +   + L   LP+
Sbjct: 796  ILTQKPSLIKASKEGKLLSNFD----DAKQDAIVPAFVRNVTQTAVFVQFAHNLYALLPK 851

Query: 993  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
                    S  D+   K+   +      +I+ +  L       R +++  A +      +
Sbjct: 852  SRLPADAQSKPDFGMHKYESIEV----KIISVINDL-------RRIMVAPATAAPTEEVT 900

Query: 1053 KRAKKK-----SSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVE- 1105
            K+ K K          G++V A IT IK  +L ++       GR+ +++V D   ++ + 
Sbjct: 901  KKQKDKVPAPADGLGFGTVVTATITSIKETQLNVQLIDNQVQGRVDVSQVFDKWEDITDP 960

Query: 1106 -NLFSNFKIGQTVTARIIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKL 1154
                  F   Q +  ++I   +  D +  FL           E+S K S +   E  + +
Sbjct: 961  KKPLDKFHRKQQIKLKVIGVHDAKDHR--FLPISHRSAHSVLEMSAKHSDV---EGENPI 1015

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
                  + +G     YV  V  ++  + +S  ++ ++  ++++ + S L + +  F +G 
Sbjct: 1016 TLSLDSLKVGDSHIAYVNNVTPQFLWVNLSPSVRGRVSAMEASDDLSLLNDLEANFPVGS 1075

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
            A+   V SI+ EK  L L  R   D    + VD       T + +  ++ G+I+K+    
Sbjct: 1076 ALKVKVKSIDAEKNRLDLSARSSTDS---QGVD------WTSLKQNMVLPGKITKV--NE 1124

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
              ++V++   + G VH  ++ +         YD+   + L+ Y + Q V+  ++E+    
Sbjct: 1125 RQVMVKLSDIVSGPVHLPDMAD--------NYDD--INTLN-YKKNQIVRVAIVEVDANN 1173

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
            +    + LS+R S           LS+ +    K +  +  ++   +V+G+VKNV+ KG 
Sbjct: 1174 K---RLRLSMRPS---------RILSSTLPVADKEIADLSQVAAGDVVRGFVKNVSDKGL 1221

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DS 1452
            F+ L   + A V ++NLSD +++  +  F + +LV GRVLSV+   K+VE++LK S  D 
Sbjct: 1222 FVALGGHITALVKIANLSDRFLKDWKDHFQVDQLVKGRVLSVDSALKQVEMSLKASAVDE 1281

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
                    N++     G +V G++++VE +G FI ++N+N V
Sbjct: 1282 DYTPPVSYNDIKE---GSVVTGKVRKVEEFGAFILVDNSNNV 1320



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 166/373 (44%), Gaps = 29/373 (7%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            ++L ++  G      V  V  + L + L   +RG   A +A D + L N++EAN      
Sbjct: 1017 LSLDSLKVGDSHIAYVNNVTPQFLWVNLSPSVRGRVSAMEASDDLSLLNDLEAN------ 1070

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F VG  +   V  +D +K  +      LS R S   +G+   ++++ MVL   +  + 
Sbjct: 1071 --FPVGSALKVKVKSIDAEKNRLD-----LSARSSTDSQGVDWTSLKQNMVLPGKITKVN 1123

Query: 245  DHGYILHFG-LPSFTGFLP--RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            +   ++    + S    LP   +N  + + ++ K   +++  +  +D   K + LS  P 
Sbjct: 1124 ERQVMVKLSDIVSGPVHLPDMADNYDDINTLNYKKNQIVRVAIVEVDANNKRLRLSMRPS 1183

Query: 302  TV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
             +  S     D +   +  +  G +V   V+++ + G+ ++   + T  V I +L + F 
Sbjct: 1184 RILSSTLPVADKEIADLSQVAAGDVVRGFVKNVSDKGLFVALGGHITALVKIANLSDRF- 1242

Query: 360  TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL-HNRAPPSHVKVGDIYDQS---- 414
              +WK+ +   + V  R+L VD   + V ++L    +  +  PP  V   DI + S    
Sbjct: 1243 LKDWKDHFQVDQLVKGRVLSVDSALKQVEMSLKASAVDEDYTPP--VSYNDIKEGSVVTG 1300

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            KV +V+     +L   S  VS   +   S++A+E V+   K YKEG  V+  +L    ++
Sbjct: 1301 KVRKVEEFGAFILVDNSNNVSGLCHR--SEMADEAVKDATKLYKEGDAVKALVLEVDAVK 1358

Query: 475  GLATGILKASAFE 487
               +  LK S F+
Sbjct: 1359 RRISFGLKPSLFD 1371



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 6/175 (3%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S V  G VV+G V  V   G  V   G + AL  + ++S+  +      F+V   +  RV
Sbjct: 1201 SQVAAGDVVRGFVKNVSDKGLFVALGGHITALVKIANLSDRFLKDWKDHFQVDQLVKGRV 1260

Query: 554  LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF--VRFYNGV 609
            L V S  K++ ++ K + V        SY +  +  +  G + K+E+ G F  V   N V
Sbjct: 1261 LSVDSALKQVEMSLKASAVDEDYTPPVSYNDIKEGSVVTGKVRKVEEFGAFILVDNSNNV 1320

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
             G   RSE+  +   + + +Y  G  VK  ++      RRI  SF +KP+   ED
Sbjct: 1321 SGLCHRSEMADEAVKDATKLYKEGDAVKALVLEVDAVKRRI--SFGLKPSLFDED 1373



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 36/299 (12%)

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII-AK 1124
            ++  +IT++   ++ +K      G +H+ ++ D+  ++  N   N+K  Q V   I+   
Sbjct: 1114 VLPGKITKVNERQVMVKLSDIVSGPVHLPDMADNYDDI--NTL-NYKKNQIVRVAIVEVD 1170

Query: 1125 SNKPDMKKSFLWELSIKPSMLTVS--EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
            +N   ++      LS++PS +  S   +  K + +   V+ G  V G+V  V ++   + 
Sbjct: 1171 ANNKRLR------LSMRPSRILSSTLPVADKEIADLSQVAAGDVVRGFVKNVSDKGLFVA 1224

Query: 1183 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1242
            +  H+ A + I +       L++++  F + + V G VLS++   K + + L+       
Sbjct: 1225 LGGHITALVKIAN--LSDRFLKDWKDHFQVDQLVKGRVLSVDSALKQVEMSLKASAVD-E 1281

Query: 1243 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1302
            D T  +S ++    I EG +V G++ K+      ++V    ++ G  H +E+        
Sbjct: 1282 DYTPPVSYND----IKEGSVVTGKVRKVEEFGAFILVDNSNNVSGLCHRSEM-------- 1329

Query: 1303 LSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL---DGMSSTNSSD 1358
                DE   D    Y EG  VK  VLE+    R    +   L+ SL   D    +N SD
Sbjct: 1330 ---ADEAVKDATKLYKEGDAVKALVLEVDAVKR---RISFGLKPSLFDEDTDMESNDSD 1382


>gi|346977319|gb|EGY20771.1| rRNA biogenesis protein RRP5 [Verticillium dahliae VdLs.17]
          Length = 1790

 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 328/1364 (24%), Positives = 575/1364 (42%), Gaps = 148/1364 (10%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
            D+ P+FPRGGG  LT  E+ +I  E  A+ +A+  G     +K K K E++    +    
Sbjct: 64   DEEPMFPRGGGSVLTPLEQKQIQLE--AKADALREGEFDTEEKTKHKKEKRRKSKLGAFE 121

Query: 109  SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                   S +       +  K ++ G  + G V+ ++  +L I LP  L G    A A+ 
Sbjct: 122  DTKKKSSSDEDGTKIEALNYKRLAKGSVVLGQVSAISHHNLTIALPNNLSGNVSIA-AIS 180

Query: 169  PILDNEIEANEDNL-----------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRK 211
             ++  +I+   +                   L ++F VGQ V   V+   + +    K  
Sbjct: 181  DVVTAKIQQAAEASDDDDDSADEGDDDDDIELNSLFEVGQYVRAYVISTKEGEGSGKKNH 240

Query: 212  IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AE 268
            I LSLR      G+S   V     + A V S++DHGY +  G+ +    GFLP+ ++ +E
Sbjct: 241  IELSLRPEDANSGMSKNDVVANATVMAAVTSVQDHGYEMELGVDNKKLKGFLPKKDVGSE 300

Query: 269  NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
               + ++PG +   +V+S+  + K+  L  D + + K      +  +++   PG +V   
Sbjct: 301  VDELRLQPGAVSLCLVKSV--SGKIAQLCLDSEKMGKVDNIATEATTVNTFQPGTVVDVL 358

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--A 386
            V S    G++   L +   T D+ H        +    Y    +V AR++   P ++   
Sbjct: 359  VTSTTGRGLLGKILGHLPVTADLIHSGAGPDAVDLDAKYKIGSRVKARVICTFPNAKNPK 418

Query: 387  VGLTLNPYLLHNRA----------PPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
            +G++L P+++  +A          PP +V  +    D+  V +V+  +GL +D+    +S
Sbjct: 419  LGISLLPHVVKLQAKKAGKGGQAKPPLNVLPIAARVDKCTVRKVEPEIGLYVDVGVAGLS 478

Query: 436  TPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
               +V IS V + +V  L +    +KEGS  R R++G+   +G+     + +  E     
Sbjct: 479  --GFVHISKVKDGKVEALYESSGPFKEGSVHRGRVIGYSTFDGMYLMTFEPTIIEQQFIR 536

Query: 493  HSDVKPG-----MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
              DV  G     M+ K  V      G +V+   G+       H ++  +  P KKF+ G 
Sbjct: 537  LEDVPAGEIVSCMIEKVVVGGQGVSGLVVKVAEGITGYVHETHFADVRLQHPEKKFREGM 596

Query: 548  ELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
             +  RVL V+ ++  + +T KKTLV S   I+ S+ E        G I+ I  HG  + F
Sbjct: 597  TVKARVLSVRPRKRQMRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEF 656

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
            Y GV+G+ P S++      +P   + VGQVV   I+   P ++++ +S    P+    D 
Sbjct: 657  YKGVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHILEVDPENQKLLVS-CKDPSAFGLDK 715

Query: 666  LVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIK 719
               L     GS+VSG   V+  +   V+V   G + K  +P   L D  + A   +S +K
Sbjct: 716  QAALKALSVGSIVSG--KVIQKSDDDVHVELDGSNLKAILPLGQLTD--KSANKSQSALK 771

Query: 720  P---GYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNI 772
                G     LLVLD NE    + LS+K SL+ + +  +L    +     + V G++ +I
Sbjct: 772  RIHMGQTLTDLLVLDKNERRRAITLSSKPSLVEAGKTGKLICTYADAKVGAEVPGFISSI 831

Query: 773  IETGCFVRFLGRLTG--FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
                  VRF G L G  F  R    D ++          QS+   I  ++ E  R+ +  
Sbjct: 832  RPGAVLVRFGGNLVGVMFKTRLPIEDQEKEAFG--LRKDQSITVRIRAIDLERTRLVVDP 889

Query: 831  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK--------- 881
              +   S +A   +     E++ A  Q+          V+    G ++E K         
Sbjct: 890  LTAELPSNEAKPKK-----EKESARPQAHGP-------VQDITFGQIVEAKIVGIHDTQL 937

Query: 882  -VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI--QAAILDVAKAERLVDLSL 938
             V  ++     V   +  D +  I   +   +  + G  I  +A  L  +K  R +  S 
Sbjct: 938  NVETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIRVRAIGLHDSKDHRFLAFSH 997

Query: 939  KTV-FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHS 996
            ++   +  F    S+ +A   + K  + +DL V  T  A V     N L  ++ P     
Sbjct: 998  RSYNSVLEFTAKASDIEAD--ELKPLSLEDLQVGSTHVAFVNNASRNGLWTNISPVVRGR 1055

Query: 997  IGYASVSDYNTQKFPQ--KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR 1054
            I    VSD +T K       F  G ++   V+A+     A R +L L A S++  + +  
Sbjct: 1056 INAMDVSD-DTSKMNDVINNFPIGTALKVRVIAV----DAKRGVLDLSARSDSSAAVTWD 1110

Query: 1055 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
            + K +    G +V+     +   ++ +K G    G +H+ +++DD  +V  N    +  G
Sbjct: 1111 SIKPNQVLAGCVVK-----VNERQIMVKLGSNVAGHVHLVDMSDDFGDV--NTL-KYDKG 1162

Query: 1115 QTVTARIIA--KSNKPDMKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGY 1170
              +   ++   KSNK          LS +PS +  + S I    +     V  G  + G+
Sbjct: 1163 DAIQVSVVEVDKSNK-------RVRLSTRPSRVLNSSSPITDPEITSVKQVVSGSTIRGF 1215

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            V  V ++   + +  ++ A + I  S      L+E++  F + + V G VLS+++    +
Sbjct: 1216 VKHVADKGVFVLLGGNVSALVKI--SNLSDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQV 1273

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGR 1288
             L L+          VD +   ++T+  I    IV G+I K+      +VV    ++ G 
Sbjct: 1274 ELSLK-------SSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGL 1326

Query: 1289 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
             H +E+ +  V            D    Y  G  VK KVL + R
Sbjct: 1327 CHRSEMADSPVE-----------DARKLYKAGDVVKAKVLTLDR 1359



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 178/795 (22%), Positives = 352/795 (44%), Gaps = 118/795 (14%)

Query: 736  NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
             + L+ K +L+NS   +      +       G + +I   G  + F   + G+ P S+  
Sbjct: 611  QMRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMS 670

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            +    D  + + VGQ V  +IL+V+ E  ++ +S K               F L+++ A+
Sbjct: 671  EAFIQDPKEHFKVGQVVNVHILEVDPENQKLLVSCKDPSA-----------FGLDKQAAL 719

Query: 856  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 915
                          +   +GS++ GKV + +D  V V  +  S++   +   QL   T +
Sbjct: 720  --------------KALSVGSIVSGKVIQKSDDDVHVELD-GSNLKAILPLGQL---TDK 761

Query: 916  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASK------ 966
            S +  Q+A+  +   + L DL    + +D+    N  R+A     K    EA K      
Sbjct: 762  SANKSQSALKRIHMGQTLTDL----LVLDK----NERRRAITLSSKPSLVEAGKTGKLIC 813

Query: 967  ---DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQKQFLNGQS 1020
               D  V   V   +  ++   +++        + + +   + D   + F  ++    QS
Sbjct: 814  TYADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPIEDQEKEAFGLRK---DQS 870

Query: 1021 VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------YDV--GSLVQA 1069
            +   + A+    T    L++    +E  ++ +K  K+K S          D+  G +V+A
Sbjct: 871  ITVRIRAIDLERTR---LVVDPLTAELPSNEAKPKKEKESARPQAHGPVQDITFGQIVEA 927

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARIIAKSNK 1127
            +I  I   +L ++      GR+ I+++ D   N+   E   S FK G+T+  R I   + 
Sbjct: 928  KIVGIHDTQLNVETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIRVRAIGLHDS 987

Query: 1128 PDMK------KSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
             D +      +S+  + E + K S +   E+   L  E  D+ +G     +V        
Sbjct: 988  KDHRFLAFSHRSYNSVLEFTAKASDIEADEL-KPLSLE--DLQVGSTHVAFVNNASRNGL 1044

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
               IS  ++ ++  +D + + S++ +    F IG A+   V++++ ++ +L L  R    
Sbjct: 1045 WTNISPVVRGRINAMDVSDDTSKMNDVINNFPIGTALKVRVIAVDAKRGVLDLSAR---- 1100

Query: 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
              SD +  ++ D+    I    ++ G + K+      ++V++G ++ G VH  ++ +   
Sbjct: 1101 --SDSSAAVTWDS----IKPNQVLAGCVVKV--NERQIMVKLGSNVAGHVHLVDMSD--- 1149

Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1359
                   D G  + L  YD+G  ++  V+E+ ++ +    V LS R S       NSS  
Sbjct: 1150 -------DFGDVNTLK-YDKGDAIQVSVVEVDKSNK---RVRLSTRPS----RVLNSSSP 1194

Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1419
             TD       +  ++ +     ++G+VK+V  KG F++L   + A V +SNLSD +++  
Sbjct: 1195 ITD-----PEITSVKQVVSGSTIRGFVKHVADKGVFVLLGGNVSALVKISNLSDRFLKEW 1249

Query: 1420 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479
            ++ F + +LV GRVLSV+  + +VE++LK+S     +   +    ++    IV G+I++V
Sbjct: 1250 KEHFQVDQLVKGRVLSVDEGAGQVELSLKSS-VVDDNYKPLKTYKDIKPNQIVTGKIRKV 1308

Query: 1480 ESYGLFITIENTNLV 1494
            E +G FI ++ ++ V
Sbjct: 1309 EDFGAFIVVDGSDNV 1323



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 163/364 (44%), Gaps = 41/364 (11%)

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG-----IDVKP- 276
            K LSLE +Q G    A+V +   +G   +   P   G +   ++++++      I+  P 
Sbjct: 1019 KPLSLEDLQVGSTHVAFVNNASRNGLWTNIS-PVVRGRINAMDVSDDTSKMNDVINNFPI 1077

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L+  V ++D  R V+ LS+  D+ +         ++ D + P  +++  V  + E  
Sbjct: 1078 GTALKVRVIAVDAKRGVLDLSARSDSSA--------AVTWDSIKPNQVLAGCVVKVNERQ 1129

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            +M+   +   G V +  + + F   N    Y++   +   ++ VD +++ V L+  P  +
Sbjct: 1130 IMVKLGSNVAGHVHLVDMSDDFGDVNTLK-YDKGDAIQVSVVEVDKSNKRVRLSTRPSRV 1188

Query: 397  HNRAPPSHVKVGDIYDQSKVVR-----------VDRGLGLLLDIPSTPVSTPAYVTISDV 445
             N + P  +   +I    +VV             D+G+ +LL       +  A V IS++
Sbjct: 1189 LNSSSP--ITDPEITSVKQVVSGSTIRGFVKHVADKGVFVLLG-----GNVSALVKISNL 1241

Query: 446  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVV 502
            ++  +++ ++ ++    V+ R+L      G     LK+S  +     + T+ D+KP  +V
Sbjct: 1242 SDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIV 1301

Query: 503  KGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558
             GK+  V+ FGA +   G   V  LC    M++  +    K +K G  +  +VL +    
Sbjct: 1302 TGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYKAGDVVKAKVLTLDRNK 1361

Query: 559  KRIT 562
            KRI+
Sbjct: 1362 KRIS 1365



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 6/170 (3%)

Query: 499  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
            G  ++G V  V   G  V   G V AL  + ++S+  + +  + F+V   +  RVL V  
Sbjct: 1209 GSTIRGFVKHVADKGVFVLLGGNVSALVKISNLSDRFLKEWKEHFQVDQLVKGRVLSVDE 1268

Query: 558  -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF--VRFYNGVQGFAP 614
             + ++ ++ K ++V      L +Y +     I  G I K+E  G F  V   + V G   
Sbjct: 1269 GAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGLCH 1328

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
            RSE+   P  +   +Y  G VVK ++++     +RI  SF +KP    +D
Sbjct: 1329 RSEMADSPVEDARKLYKAGDVVKAKVLTLDRNKKRI--SFGLKPAYFDDD 1376



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 31/189 (16%)

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            S + G+V ++ + G FV   G ++     S   D    +  + + V Q V+  +L V+  
Sbjct: 1210 STIRGFVKHVADKGVFVLLGGNVSALVKISNLSDRFLKEWKEHFQVDQLVKGRVLSVDEG 1269

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             G++ LSLK S                            N   LK  +      ++ GK+
Sbjct: 1270 AGQVELSLKSSVVDD------------------------NYKPLKTYKDIKPNQIVTGKI 1305

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
             +  DFG  +  +   +V G     ++A + VE       +G V++A +L + + ++ + 
Sbjct: 1306 RKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYKAGDVVKAKVLTLDRNKKRIS 1365

Query: 936  LSLKTVFID 944
              LK  + D
Sbjct: 1366 FGLKPAYFD 1374



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 113/533 (21%), Positives = 219/533 (41%), Gaps = 95/533 (17%)

Query: 993  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
            Y H   +A V      + P+K+F  G +V A V+++       RL L    ++    S +
Sbjct: 574  YVHETHFADVR----LQHPEKKFREGMTVKARVLSVRPRKRQMRLTLKKTLVN----SDT 625

Query: 1053 KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 1112
               K     +VG      I++I P   R++F  G  G + ++++++     +++   +FK
Sbjct: 626  PIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE---AFIQDPKEHFK 682

Query: 1113 IGQTVTARIIAKSNKPDMKKSFLWELSIK-PSMLTVSEIGS-KLLFEECDVSIGQRVTGY 1170
            +GQ V   I+     P+ +K     +S K PS   + +  + K L      S+G  V+G 
Sbjct: 683  VGQVVNVHILEVD--PENQKLL---VSCKDPSAFGLDKQAALKAL------SVGSIVSGK 731

Query: 1171 V-YKVDNEWALLTISRHLKAQL---FILDSAYEPSELQEFQRRFHIGKAVTG-HVLSINK 1225
            V  K D++  +     +LKA L    + D +   S  Q   +R H+G+ +T   VL  N+
Sbjct: 732  VIQKSDDDVHVELDGSNLKAILPLGQLTDKSANKS--QSALKRIHMGQTLTDLLVLDKNE 789

Query: 1226 EKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQI 1281
             ++ + L  +P   + G + K +    D           VG  +   +S +  G ++V+ 
Sbjct: 790  RRRAITLSSKPSLVEAGKTGKLICTYADAK---------VGAEVPGFISSIRPGAVLVRF 840

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1341
            G +L G +  T L       P+   ++  F      D+   V+ + +++ RT        
Sbjct: 841  GGNLVGVMFKTRL-------PIEDQEKEAFGLRK--DQSITVRIRAIDLERT-------- 883

Query: 1342 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK--------IEDLSPNMIVQGYVKNVTSKG 1393
               R  +D +    +++L ++   P K  E         ++D++   IV+  +  +    
Sbjct: 884  ---RLVVDPL----TAELPSNEAKPKKEKESARPQAHGPVQDITFGQIVEAKIVGIHDTQ 936

Query: 1394 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL-------------S 1440
              +  + K+  +V +S + D +    + E P+ +   G  + V  +             S
Sbjct: 937  LNVETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIRVRAIGLHDSKDHRFLAFS 996

Query: 1441 KR-----VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R     +E T K SD   A + +  +L +L VG   +  +      GL+  I
Sbjct: 997  HRSYNSVLEFTAKASDIE-ADELKPLSLEDLQVGSTHVAFVNNASRNGLWTNI 1048



 Score = 44.3 bits (103), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 33/237 (13%)

Query: 1260 GDIVGGRISK---ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            G+IV   I K      GV GLVV++   + G VH T   ++ +  P     E +F     
Sbjct: 543  GEIVSCMIEKVVVGGQGVSGLVVKVAEGITGYVHETHFADVRLQHP-----EKKF----- 592

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
              EG  VK +VL +    R    + L+L+ +L      NS       DTP   ++  +++
Sbjct: 593  -REGMTVKARVLSVRPRKR---QMRLTLKKTL-----VNS-------DTP--IIKSFDEV 634

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
                   G + +++  G  I   + +   + +S +S+ +++ P++ F +G++V   +L V
Sbjct: 635  EVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHILEV 694

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            +P ++++ V+ K  D       +   L  L VG IV G++ +     + + ++ +NL
Sbjct: 695  DPENQKLLVSCK--DPSAFGLDKQAALKALSVGSIVSGKVIQKSDDDVHVELDGSNL 749


>gi|425767647|gb|EKV06215.1| RRNA biogenesis protein RRP5, putative [Penicillium digitatum Pd1]
 gi|425769195|gb|EKV07695.1| RRNA biogenesis protein RRP5, putative [Penicillium digitatum
           PHI26]
          Length = 2158

 Score =  197 bits (501), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 237/923 (25%), Positives = 400/923 (43%), Gaps = 109/923 (11%)

Query: 1   MAASSRKS---QKKSSKDGPKFNKASKNQFKNSKKQIND-----AVEAQDLALPPDDDVP 52
           MA   RK    ++ +++   K  K    + K   K+ ND     A +  +L++  DD+ P
Sbjct: 1   MAPIKRKGNAPEENTARQPQKRAKVGAEEVKKDHKKSNDTTTSIAGKVSELSVLRDDE-P 59

Query: 53  VFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERK--ANETVDDL- 107
            FPRGG   LT  ER +I   A  D  FE  E G    NKK  +KT     A E+ +D+ 
Sbjct: 60  SFPRGGASVLTPLERKQIQIQANRDVLFEQKESG----NKKSSQKTPSNEFAEESDNDVE 115

Query: 108 ------------GSLFGDGISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEK 147
                                    + AN         ++ K I  G  + G V+ +N  
Sbjct: 116 MEDEETTTTTKKSRKKKSKSKKSADKEANDKQDVRIEGLSFKRIVPGAMILGQVSSINAH 175

Query: 148 DLVICLPGGLRG---LARAADALDPILDNEIEANEDNL------------LPTIFHVGQL 192
           D+ + LP  L G   L   +  L+  L+  +    ++             L   F++GQ 
Sbjct: 176 DIGLSLPNNLTGYVPLTSVSKGLEDRLEKMLNDEGEDDDAEDSSDDESFDLKDHFYLGQY 235

Query: 193 VSCIVLQLD---DDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
           +   V+      DD K   K++I LS+       G S   +     + A V S+EDHG +
Sbjct: 236 LRAFVVSTGSNPDDPKAKSKKRIELSVDPRQTNTGFSKSDLVVNSAVQASVVSVEDHGVV 295

Query: 250 LHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
           +  G+      GF+       N     +K G +   +V   + +  V+ LSS+  T +  
Sbjct: 296 MDLGIEGSELKGFMSSKETDPNVDYSSIKEGSVFLCMVTGQNASGNVIKLSSNFQTSASI 355

Query: 307 VTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
              +      +I+  +PG      +  +  NG++   +     TVD+        + N K
Sbjct: 356 KKSNYLSSAPTINTFLPGTAAEILLTEVTSNGMIGKIMGMLDATVDLVQ-----SSINGK 410

Query: 365 NDYNQHKKVNA----RILFVDPTSRA--VGLTLNPYLLH----NRAPPSH---VKVGDIY 411
            D  +  K+ A    RI+   P +    V  ++  ++L      R P S      +  I 
Sbjct: 411 IDLEKKYKIGAKIKGRIISTFPAAEPLKVSFSMLDHILKLSSDARGPGSSDDAPAISAII 470

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRIL 468
            + KVV+VD GLG+   I  T      +V +S +++ +V  +++    ++  +    R++
Sbjct: 471 PEVKVVKVDHGLGVYARIGET--KHMGFVHMSRLSDGKVETIDESSGAFQLDAVHEARVI 528

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVK 523
           G+  ++ L     + S  E       DV  G +VKGKV    I  D   G IV    G+ 
Sbjct: 529 GYNSIDNLYILSFEKSVIEQPFLRVEDVNVGAIVKGKVEKLLIGADGMNGLIVNLADGIT 588

Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYA 581
            L P  H ++  +  P KKF+ G +L  R+L V  + ++I +T KK+L+ S+  I   Y 
Sbjct: 589 GLVPSMHFADTMLQFPEKKFREGQKLSLRILSVNLEKRQIRLTLKKSLLNSESTIWKDYK 648

Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
           + T    + G I  ++ HG  V+FY  V+GF P SE+      +P+  + +GQVV    +
Sbjct: 649 DITPSAQSPGTIVNLQSHGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRLGQVVNVHAL 708

Query: 642 SSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
           S   +  R+ +S    P+  +E      + +  G LV+GVV   + + V++ +   G   
Sbjct: 709 SVDASLGRLAVS-CKDPSTFTEKYREAFENLHPGHLVTGVVFEKSNDDVLLKLDESGLV- 766

Query: 697 GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ-- 751
             +   HL D        M S ++ G + + LLVL+ + ++ L+  S++ SL  +A+Q  
Sbjct: 767 ARLDAAHLIDGPPSKQNSMLSKLRVGQKLNDLLVLNIQRAHRLIKVSSRASLKKAAKQKN 826

Query: 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY---V 808
           +P     +   S+V G++ NI   G FV FLG LTG  P+    D   A+L + +Y    
Sbjct: 827 IPGQFEEVQEGSLVTGFIRNITPDGVFVEFLGGLTGLLPKRLIED---ANLEQPHYGLSK 883

Query: 809 GQSVRSNILDVNSETGRITLSLK 831
            Q++  N+  V+ +  R  LS+K
Sbjct: 884 AQTIVVNVQSVDQDLKRFILSMK 906



 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 239/1055 (22%), Positives = 468/1055 (44%), Gaps = 143/1055 (13%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 554
            PG   +  +  V S G I +  G + A   L   S    +   KK+K+GA++  R++   
Sbjct: 372  PGTAAEILLTEVTSNGMIGKIMGMLDATVDLVQSSINGKIDLEKKYKIGAKIKGRIISTF 431

Query: 555  -GVKSKRITVTHKKTLVK----SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
               +  +++ +    ++K    ++    S  A A   +I    + K++ HG  V    G 
Sbjct: 432  PAAEPLKVSFSMLDHILKLSSDARGPGSSDDAPAISAIIPEVKVVKVD-HGLGVYARIGE 490

Query: 610  ---QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----MMKPT 659
                GF   S L    ++   E S  + +  V + R++          LSF    + +P 
Sbjct: 491  TKHMGFVHMSRLSDGKVETIDESSGAFQLDAVHEARVIGYNSIDNLYILSFEKSVIEQPF 550

Query: 660  RVSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
               ED  V +G++V G V+ +   A     ++  +A G + G +P+ H AD +      K
Sbjct: 551  LRVED--VNVGAIVKGKVEKLLIGADGMNGLIVNLADGIT-GLVPSMHFADTMLQFPEKK 607

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
               + G +   ++L ++ E   + L+ K SL+NS   +  D   I P++   G + N+  
Sbjct: 608  --FREGQKLSLRILSVNLEKRQIRLTLKKSLLNSESTIWKDYKDITPSAQSPGTIVNLQS 665

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G  V+F G + GF P S+  +    D ++ + +GQ V  + L V++  GR+ +S K   
Sbjct: 666  HGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRLGQVVNVHALSVDASLGRLAVSCKDP- 724

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              ST     +E F                      E    G ++ G V E ++  V++  
Sbjct: 725  --STFTEKYREAF----------------------ENLHPGHLVTGVVFEKSNDDVLLKL 760

Query: 895  EEHSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFID 944
            +E   V      H + G   +  S++             +L++ +A RL+ +S +     
Sbjct: 761  DESGLVARLDAAHLIDGPPSKQNSMLSKLRVGQKLNDLLVLNIQRAHRLIKVSSRASLKK 820

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 1004
              ++ N   Q ++ +   E S   G       I  I  +   V  L      +    + D
Sbjct: 821  AAKQKNIPGQFEEVQ---EGSLVTGF------IRNITPDGVFVEFLGGLTGLLPKRLIED 871

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK------ 1058
             N ++ P       Q+++  V ++       R +L +K +  T+ +  K AK+       
Sbjct: 872  ANLEQ-PHYGLSKAQTIVVNVQSV--DQDLKRFILSMKPVQATQAAPKKVAKQTDETVVN 928

Query: 1059 ---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NL 1107
                     S +  G +V+ ++  IK  ++ ++      GRI ++E+ DD  ++ +    
Sbjct: 929  PIDDSIESMSDFTFGRIVECKVVSIKATQINVQLADNVQGRIDVSEIFDDWKDIKDRKQP 988

Query: 1108 FSNFKIGQTVTARII-----AKSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1157
               FK  QT++ARI+     A+++K         K  ++ELS+KPS +  +   + L  E
Sbjct: 989  LRFFKAKQTLSARILLGVHDARNHKFLPISHRTGKYPVFELSLKPSYVKATN-PAPLNME 1047

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
            +  V +G    G+V  V ++   + +S +++ +L  +D++ + S L E ++ F IG A+ 
Sbjct: 1048 Q--VQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTEIEKNFPIGSALK 1105

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              V ++N EK  L L  +   D ++   + +           G ++ GRI+K+      L
Sbjct: 1106 VQVTAVNTEKGHLNLSAKQGYDKLTFGDISV-----------GMVLPGRITKVTER--QL 1152

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
            ++Q+G  L G V+ T++ +          D  + +P + +++ + ++  V+ + ++ +  
Sbjct: 1153 IMQLGESLVGAVNLTDIAD----------DYSKANP-TVHNKNEVLRACVIAVDKSNK-- 1199

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
              + LSLR S           +S+ +    + +  ++D+  N I++G+V+ VT  G F+ 
Sbjct: 1200 -KIALSLRPS---------KVMSSSLPVQDREISSLKDVKLNDIIRGFVRRVTDSGLFVA 1249

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
            +S  + A V +S+LSD Y++  +  F   +LV G+V  V+    +++++LK S      +
Sbjct: 1250 VSNDITAYVRVSDLSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFK 1309

Query: 1458 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            + I  L +L VG IV G++++VE +G FI I+ ++
Sbjct: 1310 API-ALKDLKVGQIVTGKVRKVEEFGAFIVIDGSS 1343



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 165/379 (43%), Gaps = 43/379 (11%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + ++ +  G    G V  V +  L + L   +RG  R  DA D + L  EIE N      
Sbjct: 1044 LNMEQVQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTEIEKN------ 1097

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  ++ +K         L+L     Y  L+   +  GMVL   +  + 
Sbjct: 1098 --FPIGSALKVQVTAVNTEKGH-------LNLSAKQGYDKLTFGDISVGMVLPGRITKVT 1148

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+  G  S  G +   ++A++      P +     +L+  V ++D++ K + LS  
Sbjct: 1149 ERQLIMQLG-ESLVGAVNLTDIADDYS-KANPTVHNKNEVLRACVIAVDKSNKKIALSLR 1206

Query: 300  PDTV--SKCVTKD-----LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 352
            P  V  S    +D     LK + ++ ++ G      V+ + ++G+ ++     T  V + 
Sbjct: 1207 PSKVMSSSLPVQDREISSLKDVKLNDIIRGF-----VRRVTDSGLFVAVSNDITAYVRVS 1261

Query: 353  HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVG 408
             L +++    WK+ +   + V  ++ FVD     + L+L   +L  + +AP +   +KVG
Sbjct: 1262 DLSDSY-LKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPIALKDLKVG 1320

Query: 409  DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 468
             I    KV +V+     ++   S+ +S   +   S++AE+ V    K Y EG  V+ +++
Sbjct: 1321 QIV-TGKVRKVEEFGAFIVIDGSSNISGLCHR--SEMAEKRVEDARKLYDEGDAVKAKVI 1377

Query: 469  GFRHLEGLATGILKASAFE 487
                     +  LKAS F+
Sbjct: 1378 KIDLESKKISFSLKASHFQ 1396



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 102/499 (20%), Positives = 203/499 (40%), Gaps = 92/499 (18%)

Query: 492  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVG 546
            + SD   G +V+ KV+++ +    VQ    V+    +  +  +++ +K    P + FK  
Sbjct: 936  SMSDFTFGRIVECKVVSIKATQINVQLADNVQGRIDVSEIFDDWKDIKDRKQPLRFFKAK 995

Query: 547  AELVFRVL-GVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDRLITH---------- 590
              L  R+L GV   R    + ++H+       +L++  SY +AT+    +          
Sbjct: 996  QTLSARILLGVHDARNHKFLPISHRTGKYPVFELSLKPSYVKATNPAPLNMEQVQVGSSW 1055

Query: 591  -GWITKIEKHGCFVRFYNGVQG---FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
             G++  +     +V     V+G   F   S+  L    E    + +G  +K ++ +    
Sbjct: 1056 VGFVNNVADDCLWVNLSPNVRGRLRFMDASD-DLSLLTEIEKNFPIGSALKVQVTAVNTE 1114

Query: 647  SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV------------IAKGY 694
               +NLS      +++  D + +G ++ G +  VT   +++ +            IA  Y
Sbjct: 1115 KGHLNLSAKQGYDKLTFGD-ISVGMVLPGRITKVTERQLIMQLGESLVGAVNLTDIADDY 1173

Query: 695  SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP- 753
            SK   PT H  + +  A V              + +D  +  + LS + S + S+  LP 
Sbjct: 1174 SKAN-PTVHNKNEVLRACV--------------IAVDKSNKKIALSLRPSKVMSSS-LPV 1217

Query: 754  -----SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
                 S    +  N ++ G+V  + ++G FV     +T +   S   D    +   ++  
Sbjct: 1218 QDREISSLKDVKLNDIIRGFVRRVTDSGLFVAVSNDITAYVRVSDLSDSYLKEWKDSFQP 1277

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
             Q V+  +  V++E G++ LSLK+S     D +F       +  IA+         +LK 
Sbjct: 1278 DQLVKGKVTFVDAEQGKLQLSLKESVL---DPNF-------KAPIAL--------KDLK- 1318

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQ 921
                 +G ++ GKV +  +FG  +  +  S++ G     ++A   VE        G  ++
Sbjct: 1319 -----VGQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMAEKRVEDARKLYDEGDAVK 1373

Query: 922  AAILDVAKAERLVDLSLKT 940
            A ++ +    + +  SLK 
Sbjct: 1374 AKVIKIDLESKKISFSLKA 1392



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 141/315 (44%), Gaps = 39/315 (12%)

Query: 541  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            K F +G+ L  +V  V +++  +         KL    ++ + +  ++  G ITK+ +  
Sbjct: 1096 KNFPIGSALKVQVTAVNTEKGHLNLSAKQGYDKL----TFGDISVGMVLPGRITKVTERQ 1151

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
              ++    + G    +++  D      ++++  +V++  +++   ++++I LS  ++P++
Sbjct: 1152 LIMQLGESLVGAVNLTDIADDYSKANPTVHNKNEVLRACVIAVDKSNKKIALS--LRPSK 1209

Query: 661  VSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
            V    L            VKL  ++ G V  VT + + V V           +  +  ++
Sbjct: 1210 VMSSSLPVQDREISSLKDVKLNDIIRGFVRRVTDSGLFVAV-----------SNDITAYV 1258

Query: 709  EHATVMKSVIKP---GYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
              + +  S +K     ++ DQL+      +D E   L LS K S+++   + P     + 
Sbjct: 1259 RVSDLSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPIALKDLK 1318

Query: 761  PNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
               +V G V  + E G F+   G   ++G   RS+  + +  D  K Y  G +V++ ++ 
Sbjct: 1319 VGQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMAEKRVEDARKLYDEGDAVKAKVIK 1378

Query: 819  VNSETGRITLSLKQS 833
            ++ E+ +I+ SLK S
Sbjct: 1379 IDLESKKISFSLKAS 1393



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 123/278 (44%), Gaps = 44/278 (15%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG ++   IT++   +L ++ G    G +++T++ DD S     + +     + + A +I
Sbjct: 1136 VGMVLPGRITKVTERQLIMQLGESLVGAVNLTDIADDYSKANPTVHNK---NEVLRACVI 1192

Query: 1123 A--KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
            A  KSNK          LS++PS +  S   +  + +    DV +   + G+V +V +  
Sbjct: 1193 AVDKSNKK-------IALSLRPSKVMSSSLPVQDREISSLKDVKLNDIIRGFVRRVTDSG 1245

Query: 1179 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-----V 1233
              + +S  + A + + D     S L+E++  F   + V G V  ++ E+  L+L     V
Sbjct: 1246 LFVAVSNDITAYVRVSD--LSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESV 1303

Query: 1234 LRP-FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
            L P F+  I+ K + +           G IV G++ K+      +V+    ++ G  H +
Sbjct: 1304 LDPNFKAPIALKDLKV-----------GQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRS 1352

Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            E+    V D    YDEG             VK KV++I
Sbjct: 1353 EMAEKRVEDARKLYDEGDA-----------VKAKVIKI 1379



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 50/291 (17%)

Query: 124  NKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLL 183
            +K+T  +IS GM L G + +V E+ L++ L   L G     D    I D+  +AN     
Sbjct: 1127 DKLTFGDISVGMVLPGRITKVTERQLIMQLGESLVGAVNLTD----IADDYSKAN----- 1177

Query: 184  PTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS-LLYKGL--------SLETVQEGM 234
            PT+ +  +++   V+ +D   K     KI LSLR S ++   L        SL+ V+   
Sbjct: 1178 PTVHNKNEVLRACVIAVDKSNK-----KIALSLRPSKVMSSSLPVQDREISSLKDVKLND 1232

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK----PGLLLQGVVRSIDRT 290
            ++  +V+ + D G  +       T ++  ++L+++   + K    P  L++G V  +D  
Sbjct: 1233 IIRGFVRRVTDSGLFVAVS-NDITAYVRVSDLSDSYLKEWKDSFQPDQLVKGKVTFVDAE 1291

Query: 291  RKVVYLS-----SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
            +  + LS      DP+  +    KDLK         G +V+ +V+ + E G  +      
Sbjct: 1292 QGKLQLSLKESVLDPNFKAPIALKDLK--------VGQIVTGKVRKVEEFGAFI----VI 1339

Query: 346  TGTVDIFHLQNTFPTTNWKND-----YNQHKKVNARILFVDPTSRAVGLTL 391
             G+ +I  L +       + +     Y++   V A+++ +D  S+ +  +L
Sbjct: 1340 DGSSNISGLCHRSEMAEKRVEDARKLYDEGDAVKAKVIKIDLESKKISFSL 1390


>gi|384487023|gb|EIE79203.1| hypothetical protein RO3G_03908 [Rhizopus delemar RA 99-880]
          Length = 861

 Score =  197 bits (500), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 156/555 (28%), Positives = 275/555 (49%), Gaps = 44/555 (7%)

Query: 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN----- 173
           +  ++T K ++ G  L G ++ +NE +L + LP  L G   +   +DAL  I+       
Sbjct: 100 HIEQLTFKKLTVGTCLLGCISRINELELFVSLPHQLVGVIPITEVSDALSDIIQRIADED 159

Query: 174 -EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE 232
            + E ++   L  +FHVGQ + C ++ L    +E  K+ I LSL+ + + + +    V  
Sbjct: 160 EDEEESKMPKLNDLFHVGQWIRCKIISLPA-VEEKSKKPIELSLKPNTVNEDMVKVDVTP 218

Query: 233 GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSI 287
           G+ L A VKS+EDHGY+L  G+   TGFLP+          N   ++  G  ++ +V   
Sbjct: 219 GVTLGASVKSVEDHGYVLDLGVKDLTGFLPKKEAKAYIEKYNRDEELAVGQYVECLVEK- 277

Query: 288 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
            +  + V+++ D   ++  V +D     I  ++PG  VS  V+++  NG+ L  +  ++ 
Sbjct: 278 -KNNRTVHVTIDRSKIASSVVEDPFS-RITSILPGQRVSGVVEAVQANGLALKMMGLYSS 335

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNRAPP--- 402
           T+D  H+ +     + ++ +   +KV  R LF  ++   +A+G ++  + L    P    
Sbjct: 336 TIDASHIPSNM---DIESSFKLGQKVVFRTLFTILNTEEKAIGGSILAHALDLDVPTLAN 392

Query: 403 ---SHVKVGDIY------DQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
              S   VGD++      + +KV RV +  + + LD      S   YV IS +A+E V  
Sbjct: 393 GVKSDKFVGDVFPAGSFLENTKVYRVSNSSVWVTLDGLD---SITGYVHISRLADERVPS 449

Query: 453 LEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
           L      Y+ G+  R R+L +  ++ +    L+ S         +D++ G +V+G V  +
Sbjct: 450 LSATAGDYRIGTTHRARVLSYNPVDAMLVLTLQPSVLAEKYLRVTDIEVGSMVEGVVEKI 509

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKK 567
              G I++    + AL P  H+++ ++  P  KFKVG +   RVL V  +R  I +T KK
Sbjct: 510 IPAGVILKLSKSISALVPAAHLADVKLSHPEYKFKVGKKFQCRVLKVDGERQKIILTLKK 569

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           +L+ S+  I  + A+     I+HG IT I+ +GC + +YNGV  F P  E+         
Sbjct: 570 SLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYNGVSAFVPGGEMTEAHVPNLG 629

Query: 628 SMYHVGQVVKCRIMS 642
           +++HVGQ VK  ++S
Sbjct: 630 TVFHVGQTVKTTVLS 644



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 108/212 (50%), Gaps = 25/212 (11%)

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAV 685
           Y +G   + R++S  P    + L+  ++P+ ++E  L    +++GS+V GVV+ + P  V
Sbjct: 457 YRIGTTHRARVLSYNPVDAMLVLT--LQPSVLAEKYLRVTDIEVGSMVEGVVEKIIPAGV 514

Query: 686 VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-------QLLVLDNESSNL 737
           ++  ++K  S   +P  HLAD  L H         P Y+F        ++L +D E   +
Sbjct: 515 ILK-LSKSIS-ALVPAAHLADVKLSH---------PEYKFKVGKKFQCRVLKVDGERQKI 563

Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           +L+ K SLINS   +  + +  H   + HG +  I   GC + +   ++ F P  +  + 
Sbjct: 564 ILTLKKSLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYNGVSAFVPGGEMTEA 623

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
              +L   ++VGQ+V++ +L V++E  ++ +S
Sbjct: 624 HVPNLGTVFHVGQTVKTTVLSVDAEKNKMIVS 655



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 49/81 (60%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            L +  D+   +  QGY+ N+T  G F+ L++ + A+V + NL+D +V+  +  + +G  V
Sbjct: 710  LSEFSDVRRGVCYQGYISNITDAGVFLQLNKTISARVKIGNLNDEFVKDWKSLYQVGNTV 769

Query: 1430 AGRVLSVEPLSKRVEVTLKTS 1450
              R++ ++  SKR+E +LK S
Sbjct: 770  QTRIIHIDRESKRLEASLKKS 790



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            ++ D+    +V+G V+ +   G  + LS+ + A V  ++L+D  +  PE +F +GK    
Sbjct: 492  RVTDIEVGSMVEGVVEKIIPAGVILKLSKSISALVPAAHLADVKLSHPEYKFKVGKKFQC 551

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            RVL V+   +++ +TLK   S   S+  I  N+++ HVGDI  G I  +++ G  I   N
Sbjct: 552  RVLKVDGERQKIILTLK--KSLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYN 609



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 22/185 (11%)

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            G +HI+ + D++   +     +++IG T  AR+++  N  D     +  L+++PS+L   
Sbjct: 435  GYVHISRLADERVPSLSATAGDYRIGTTHRARVLS-YNPVDA----MLVLTLQPSVL--- 486

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
               ++      D+ +G  V G V K+     +L +S+ + A   +  +     +L   + 
Sbjct: 487  ---AEKYLRVTDIEVGSMVEGVVEKIIPAGVILKLSKSISA--LVPAAHLADVKLSHPEY 541

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLR--------PFQDGISDKTV-DISNDNMQTFIHE 1259
            +F +GK     VL ++ E++ + L L+        P    ++D  V DIS+  +    + 
Sbjct: 542  KFKVGKKFQCRVLKVDGERQKIILTLKKSLINSEFPIFQNMADCHVGDISHGVITAIKNN 601

Query: 1260 GDIVG 1264
            G I+G
Sbjct: 602  GCIIG 606


>gi|330929198|ref|XP_003302547.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
 gi|311322015|gb|EFQ89360.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
          Length = 1791

 Score =  196 bits (498), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 199/763 (26%), Positives = 348/763 (45%), Gaps = 60/763 (7%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL-------- 171
           A  ++ KN+S G  + G + +++ +DLV+ LP  L G   L    D L+  L        
Sbjct: 141 AKGLSYKNLSTGTIVLGQIIDISHQDLVLALPNNLVGYVPLTAVCDKLNERLEKLLKDED 200

Query: 172 -DNEIEANEDNL----LPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
            D +  ++ED+     L  +F VGQ V +CI    +D+ +   ++++ LS+   L+ KGL
Sbjct: 201 SDKKEGSDEDDFEDVYLKDMFSVGQYVRACITATNEDNAR--ARKRLELSIDPKLVNKGL 258

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQG 282
           +   +    ++ A V S EDHG ++  GL   +  GFLP+  L        ++ G +   
Sbjct: 259 TKRKIPVNSMVQASVVSNEDHGLVMDLGLGDANLKGFLPKGELGPKIQHAKIQEGAVFMC 318

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLS 340
           +V  I+   ++V LS+D   V      +   +  +ID+ +PG  V   V     + ++  
Sbjct: 319 LVTGINSDGRIVKLSADHTKVGNVAKGNTLTEAPTIDVFLPGTAVDVLVADTTSSTLVGK 378

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL-- 396
            L     T D +H   T    +    Y    KV ARILF  P S  R VG++L  +++  
Sbjct: 379 ILGLIDATADAYHSGATEKAADVSQKYKIGTKVKARILFTCPDSEPRKVGVSLLDHVVSL 438

Query: 397 --------HNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVA 446
                     R PP+ +  + ++ + +KVV+V    G   D+    V   A+++ +SD  
Sbjct: 439 STRMSGKPKERKPPTDLLPISNVVENAKVVKVAPAQGAFFDLGIKDVVGFAHISRLSDDK 498

Query: 447 EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
            + + +   ++K  S  + RI+G+  L+G+    L+    +       D+K G VVKGKV
Sbjct: 499 VDAISEDSGQFKLDSTHKARIIGYNALDGMFQLSLEQKILDQPFLRIEDIKAGQVVKGKV 558

Query: 507 --IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 560
             +  D  GA   +++   G+  L P  H+++  +  P +KF+ G  +  RVL  +  R 
Sbjct: 559 HKLIADKTGAAAVLIRLADGITGLVPEAHLADLRLQHPERKFREGVPVTARVLYTEPARH 618

Query: 561 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            I +T KK+LV S     ++Y   ++ L   G +  + ++G  VRFY  V+ + P +E+ 
Sbjct: 619 QIQLTLKKSLVNSDAKPWTNYEMLSEGLSGPGILVSVRRNGATVRFYGDVKAWLPVAEMS 678

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL-----VS 674
                + +  +  GQVVK RI+ S+ A  R  L     P  V  +      +L     VS
Sbjct: 679 EAFVDDATRHFTNGQVVKVRII-SVDAKERQLLVSCKDPAAVDSNREAAFNALNPSDIVS 737

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDN 732
           G V   + ++  +  I  G  KG +   HL D    +  + MK  I+ G   ++L+VL  
Sbjct: 738 GTVLEKSDDSATLD-IGNGV-KGILRIGHLTDGSAKKDMSTMKK-IRIGGTLEELVVLTK 794

Query: 733 --ESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
             ++ +  +S K SL   A   +L      +     VHG+V  I+    FV     ++G 
Sbjct: 795 HGKTRSATVSNKPSLRKDAHASKLAISIEDVQAGETVHGFVRGILPDKIFVELGNGISGV 854

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +S+  +   ++ +      QS+ + +  V+   G   LS+K
Sbjct: 855 LFKSQLPEEMISEPNFGLRKDQSITARVTHVDVGKGFFWLSMK 897



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 206/441 (46%), Gaps = 47/441 (10%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 1121
            G+L    I  +K  +L ++      GRI ++E+ D   ++ +  N  ++FK+ + + AR+
Sbjct: 935  GTLTTVRIKTVKSTQLNVELAGNVLGRISVSELFDGWDSIPDKKNPTAHFKMNEKIQARV 994

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEI--GSKLLFEECDV------SIGQRVTGYVYK 1173
            + + +  + +  FL   S       V E+   +  +  E DV      + G   T +V  
Sbjct: 995  LGRHDARNFR--FLPITSRSNHKTPVYEMTANTDRIKTEADVLSLDKITPGSSHTAFVNN 1052

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            + + +  + IS +++ ++   D   E  +L   +  F +G A+   V +++     L L 
Sbjct: 1053 IADRYVWVNISANVRGRIDFFDLTEELEKLANVEENFPVGSALRVRVKAVDVAAGKLDLT 1112

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                   ++ KT+ + +      I  G I+  R++KI      +VVQI   L   +   +
Sbjct: 1113 A---VSTVTGKTLSLQD------IKVGYILPARVTKIHEA--SIVVQINEKLAAPIFLEQ 1161

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353
            L +                    YD  +  K KV ++ R       +++ + +   G+S+
Sbjct: 1162 LAD-------------------DYDMAKPNKFKVGDVLRACV----IDIDIPNKKLGLSA 1198

Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
              S  LS+ +      ++    L  + +V+G++K+V S G ++ L   ++A V +S+LSD
Sbjct: 1199 RPSRVLSSSLTVRDPEIKDKNQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSD 1258

Query: 1414 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
             Y++  +  F + +LV G+++S +   +  +++LKTS  +  + +E     +L VG IV 
Sbjct: 1259 EYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQ-GNYTEPLEFGDLKVGQIVT 1317

Query: 1474 GQIKRVESYGLFITIENTNLV 1494
             +++ VE +G+F+ ++N+N V
Sbjct: 1318 ARVRHVEDFGVFLVVDNSNNV 1338



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 165/398 (41%), Gaps = 63/398 (15%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            GS   A +  I    + +       GRI   ++ ++   +  N+  NF +G  +  R+ A
Sbjct: 1043 GSSHTAFVNNIADRYVWVNISANVRGRIDFFDLTEELEKLA-NVEENFPVGSALRVRVKA 1101

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
                 D+    L        +  VS +  K L  + D+ +G  +   V K+     ++ I
Sbjct: 1102 ----VDVAAGKL-------DLTAVSTVTGKTLSLQ-DIKVGYILPARVTKIHEASIVVQI 1149

Query: 1184 SRHLKAQLFI--LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP---FQ 1238
            +  L A +F+  L   Y+ ++      +F +G  +   V+ I+   K L L  RP     
Sbjct: 1150 NEKLAAPIFLEQLADDYDMAK----PNKFKVGDVLRACVIDIDIPNKKLGLSARPSRVLS 1205

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
              ++ +  +I + N Q  +H+  +V G I  + S   G+ V++GPH+   V  + L    
Sbjct: 1206 SSLTVRDPEIKDKN-QLKVHQ--VVRGFIKHVASN--GVYVRLGPHVEAYVRVSHLS--- 1257

Query: 1299 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1358
                    DE   D  S +   Q V  K++      R   + ++SL++S+          
Sbjct: 1258 --------DEYIKDWKSAFHVDQLVTGKIISNKEDQR---NPQMSLKTSV---------- 1296

Query: 1359 LSTDVDTPGKHLEKIE--DLSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDG 1414
                    G + E +E  DL    IV   V++V   G F+++  S  +     +S L+D 
Sbjct: 1297 ------IQGNYTEPLEFGDLKVGQIVTARVRHVEDFGVFLVVDNSNNVSGLCHISQLADN 1350

Query: 1415 YVESPEKE--FPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
             V+  + +  +    +V  +V+ +EP  +++  TLK S
Sbjct: 1351 AVDKDKIKDMYKKDDIVKAKVVKIEPKQRKISFTLKYS 1388



 Score = 43.5 bits (101), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 105/506 (20%), Positives = 190/506 (37%), Gaps = 73/506 (14%)

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            + TG       +  + T  D+K G +   ++  V S    V+  G V     +  + +  
Sbjct: 912  MKTGEALVDPVDSKILTTDDIKFGTLTTVRIKTVKSTQLNVELAGNVLGRISVSELFDGW 971

Query: 536  IVKPGKK-----FKVGAELVFRVLGVKSKR-------ITVTHKKTLVKSKLAILSSYAEA 583
               P KK     FK+  ++  RVLG    R        + ++ KT V    A        
Sbjct: 972  DSIPDKKNPTAHFKMNEKIQARVLGRHDARNFRFLPITSRSNHKTPVYEMTANTDRIKTE 1031

Query: 584  TDRL----ITHG-----WITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMY 630
             D L    IT G     ++  I     +V     V+G    F    EL      E +  +
Sbjct: 1032 ADVLSLDKITPGSSHTAFVNNIADRYVWVNISANVRGRIDFFDLTEELEKLANVEEN--F 1089

Query: 631  HVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVY 688
             VG  ++ R+ +   A+ +++L+ +   T   +S  D +K+G ++   V  +   ++VV 
Sbjct: 1090 PVGSALRVRVKAVDVAAGKLDLTAVSTVTGKTLSLQD-IKVGYILPARVTKIHEASIVVQ 1148

Query: 689  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLIN 747
            +  K      I  E LAD  + A   K   K G      ++ +D  +  L LSA+ S + 
Sbjct: 1149 INEK--LAAPIFLEQLADDYDMAKPNK--FKVGDVLRACVIDIDIPNKKLGLSARPSRVL 1204

Query: 748  SAQ---QLPS--DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            S+    + P   D + +  + VV G++ ++   G +VR    +  +   S   D    D 
Sbjct: 1205 SSSLTVRDPEIKDKNQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDW 1264

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
               ++V Q V   I+    +     +SLK S                            N
Sbjct: 1265 KSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQG------------------------N 1300

Query: 863  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------- 915
             +E        +G ++  +V    DFGV +  +  ++V G     QLA   V+       
Sbjct: 1301 YTEPLEFGDLKVGQIVTARVRHVEDFGVFLVVDNSNNVSGLCHISQLADNAVDKDKIKDM 1360

Query: 916  --SGSVIQAAILDVAKAERLVDLSLK 939
                 +++A ++ +   +R +  +LK
Sbjct: 1361 YKKDDIVKAKVVKIEPKQRKISFTLK 1386



 Score = 40.4 bits (93), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSK-----GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            +IED+    +V+G V  + +         I L+  +   V  ++L+D  ++ PE++F  G
Sbjct: 544  RIEDIKAGQVVKGKVHKLIADKTGAAAVLIRLADGITGLVPEAHLADLRLQHPERKFREG 603

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
              V  RVL  EP   ++++TLK S
Sbjct: 604  VPVTARVLYTEPARHQIQLTLKKS 627


>gi|169614287|ref|XP_001800560.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
 gi|111061496|gb|EAT82616.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
          Length = 1794

 Score =  196 bits (498), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 234/926 (25%), Positives = 398/926 (42%), Gaps = 124/926 (13%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQ-------DLALPPD----D 49
           M A  RK+++ S+   P     + +  +++K++ +D  E         D+A  P     D
Sbjct: 1   MGAIKRKAEQGST---PSKKDKTASTDRHAKRRKSDVTEQPAPAKSKPDIAPAPKSVFKD 57

Query: 50  DVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS 109
           +   FPRGG   LT  E  +I  + + +    + G+ +             ++   D+GS
Sbjct: 58  EEKSFPRGGASVLTPLEHKQIQIKANQDVLFEQSGVKRTG----------GDDGFSDMGS 107

Query: 110 LFG--------------------DGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDL 149
             G                    DG   K+ R    +  K ++ G  + G V +V+ +D+
Sbjct: 108 DDGEAAAPKAKKRPAKKSKKGQDDGEDEKIVRVEG-LNYKKLTPGTIILGQVTDVSHQDI 166

Query: 150 VICLPGGLRG---LARAADALDP--------------ILDNEIEANEDNLLPTIFHVGQL 192
           V+ LP  L G   L   +D L+               I ++E E+ ED  L  +F +GQ 
Sbjct: 167 VLALPNNLVGYVPLTAVSDKLNERLEKLLKEEEDGADIAEDEDESFEDVHLEDMFTIGQY 226

Query: 193 V-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
           + +C+    DD  +   ++++ LS+   L+ KGLS   +    ++ A V S EDHG ++ 
Sbjct: 227 MRACVTATTDDSAR--ARKRLELSIEPKLVNKGLSKRKMPINSMVQASVVSNEDHGLVMD 284

Query: 252 FGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
            GL      GFLP+  L        V+ G +   +V  ++   ++V LS+D         
Sbjct: 285 LGLDDSKIKGFLPKGELGPKIQHSKVQEGAVFMCLVTGLNSDGRIVKLSADHSKAGNLAK 344

Query: 309 KDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
            +   +  +ID+ +PG  V   V     + +    L     T D +H   T    +    
Sbjct: 345 GNTLTEAPTIDVFLPGTAVDVLVADTTASTLTGKILGLADATADAYHSGATEKGGDVAQK 404

Query: 367 YNQHKKVNARILFVDPTSRA--VGLTLNPYLL----------HNRAPP-SHVKVGDIYDQ 413
           Y    KV ARILF  P S    VG++L  +++            R P    + +  I D 
Sbjct: 405 YKIGSKVKARILFTCPDSDPARVGVSLLDHVVALSTRMSGKPKERKPALDLMPISTIIDN 464

Query: 414 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGF 470
           +KVV+V   LG   ++    V    +  IS ++++ V  L +    YK GS  R RI+G+
Sbjct: 465 AKVVKVAPALGAFFELGVRDVL--GFAHISRLSDDRVDVLSEDAGAYKLGSTHRARIVGY 522

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKAL 525
             ++GL    L+    +       D+KPG VVKGKV  +  D  GA   +V    G+  L
Sbjct: 523 NSIDGLFQLSLEQKVLDQAFLRIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGL 582

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEA 583
               H+++ ++  P +KF+ G  +  RVL  +  R  I +T KK+LV S +   + Y+  
Sbjct: 583 VTEMHLADVKLQHPERKFREGVAVTARVLYTEPARHQIQLTLKKSLVNSDVKPWTDYSMI 642

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
           ++     G +  + K+G  VRFY  V  + P +E+      + +  +  GQVV  R++S 
Sbjct: 643 SEGSKGPGILVNVLKNGAKVRFYGDVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISV 702

Query: 644 IPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
               R++ +S      + P + +  + +  G++  G V +   + V    +  G  KG +
Sbjct: 703 NAKDRQMLVSCKDPAAVDPNKEAAFNALNPGNVTKGTV-LEKSDDVATLDLGHGV-KGVL 760

Query: 700 PTEHLADHLEHATV--MKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQ--QLP 753
              HL D  E   +  MK  I+ G   + L+VL+    S  + +S K SL   AQ  +L 
Sbjct: 761 RIGHLTDGSEKKDISTMKK-IRVGGTLEDLVVLNKLLRSKVVTVSNKPSLRKDAQASKLI 819

Query: 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD--------GQRADLSKT 805
           ++   +    +VHG+V  I+    FV F   ++G   +S+  +        G R D    
Sbjct: 820 TNVEELTSGEIVHGFVRGILPDKVFVEFGNGVSGAVFKSQMTEEILTAPNFGLRKD---- 875

Query: 806 YYVGQSVRSNILDVNSETGRITLSLK 831
               QS+   I  V+   G   LS+K
Sbjct: 876 ----QSMTCRITYVDPTNGMFWLSMK 897



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/443 (20%), Positives = 210/443 (47%), Gaps = 51/443 (11%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G+ ++  I  IK  ++ ++      GRI ++E+ D   ++ +     ++F++ QT+ A++
Sbjct: 935  GTELKVRIRSIKSTQINVELAENVQGRISVSELFDSWDDIPDKKRPTAHFQMNQTIKAKV 994

Query: 1122 IAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            + + +  + +          K+  ++L+ K   L  SE G  L  ++  V+ G     +V
Sbjct: 995  LGRHDARNHRFLPITHRSSNKTPTFDLTAKNEKLK-SE-GDVLSLDK--VTEGSSYVAFV 1050

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              + + +  + +S +++ ++  LD   +  +L   +  F +G A+   V +++     L 
Sbjct: 1051 NNIADRYVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGSALKVRVKAVDIAAGRLD 1110

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L        ++ KT+ +++      +  G ++  R++KI      +VVQ+  ++   +  
Sbjct: 1111 LTA---ASTVTGKTLSLAD------LKVGYVLPARVTKIHDA--SIVVQVNENIAAPIFL 1159

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
              L +         YD+ +    S Y +G  ++  V+E+             + +   G+
Sbjct: 1160 ERLAD--------DYDKAK---PSEYKQGDVLRVCVIEVD------------IPNKKLGL 1196

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
            S+  S  LS+ +      +E    L  + +V+G++K +   G ++ L   ++  V +SNL
Sbjct: 1197 SARPSKVLSSTLPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRVSNL 1256

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1471
            SD Y++  +  F + +LV G+++S +   +  ++TLKTS +   +  EI    ++  G I
Sbjct: 1257 SDSYIKDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTS-TIQGNYVEILEFGDMKAGQI 1315

Query: 1472 VIGQIKRVESYGLFITIENTNLV 1494
            V  ++++V  +G+F+ ++N+N V
Sbjct: 1316 VTAKVRKVAEFGVFLVVDNSNNV 1338



 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 43/373 (11%)

Query: 314 ISIDLLVPGMMVSTRVQSILEN-----GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
           + I+ + PG +V  +V  ++ +      V++      TG V   HL +     + +  + 
Sbjct: 543 LRIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADV-KLQHPERKFR 601

Query: 369 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
           +   V AR+L+ +P    + LTL   L+++   P         D S +    +G G+L++
Sbjct: 602 EGVAVTARVLYTEPARHQIQLTLKKSLVNSDVKP-------WTDYSMISEGSKGPGILVN 654

Query: 429 IPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHL----- 473
           +              A++ +++++E  +    + + +G  V VR++      R +     
Sbjct: 655 VLKNGAKVRFYGDVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISVNAKDRQMLVSCK 714

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-- 531
           +  A    K +AF  L        PG V KG V+      A +    GVK +  + H+  
Sbjct: 715 DPAAVDPNKEAAFNAL-------NPGNVTKGTVLEKSDDVATLDLGHGVKGVLRIGHLTD 767

Query: 532 -SEFEIVKPGKKFKVGA---ELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATD 585
            SE + +   KK +VG    +LV     ++SK +TV++K +L K   A  ++++  E T 
Sbjct: 768 GSEKKDISTMKKIRVGGTLEDLVVLNKLLRSKVVTVSNKPSLRKDAQASKLITNVEELTS 827

Query: 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             I HG++  I     FV F NGV G   +S++  +    P+      Q + CRI    P
Sbjct: 828 GEIVHGFVRGILPDKVFVEFGNGVSGAVFKSQMTEEILTAPNFGLRKDQSMTCRITYVDP 887

Query: 646 ASRRINLSFMMKP 658
            +    LS  ++P
Sbjct: 888 TNGMFWLSMKLEP 900



 Score = 43.9 bits (102), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 1372 KIEDLSPNMIVQGYVKNVTS--KGC---FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            +IED+ P  +V+G V  + +  KG     + LS  +   V   +L+D  ++ PE++F  G
Sbjct: 544  RIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADVKLQHPERKFREG 603

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
              V  RVL  EP   ++++TLK S
Sbjct: 604  VAVTARVLYTEPARHQIQLTLKKS 627



 Score = 43.5 bits (101), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 132/337 (39%), Gaps = 66/337 (19%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVV 687
            + VG  +K R+ +   A+ R++L+     T   +S  DL K+G ++   V  +   ++VV
Sbjct: 1089 FPVGSALKVRVKAVDIAAGRLDLTAASTVTGKTLSLADL-KVGYVLPARVTKIHDASIVV 1147

Query: 688  YV---IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL-------DNESSNL 737
             V   IA       I  E LAD  + A       KP  E+ Q  VL       D  +  L
Sbjct: 1148 QVNENIA-----APIFLERLADDYDKA-------KPS-EYKQGDVLRVCVIEVDIPNKKL 1194

Query: 738  LLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
             LSA+ S + S+  LP       D + +  + VV G++  I + G +VR    +  +   
Sbjct: 1195 GLSARPSKVLSST-LPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRV 1253

Query: 792  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 851
            S   D    D    ++V Q V   I+    +     ++LK S                  
Sbjct: 1254 SNLSDSYIKDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQG-------------- 1299

Query: 852  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 911
                      N  E+        G ++  KV +  +FGV +  +  ++V G     +LA 
Sbjct: 1300 ----------NYVEILEFGDMKAGQIVTAKVRKVAEFGVFLVVDNSNNVSGLCHVSKLAD 1349

Query: 912  ATV---------ESGSVIQAAILDVAKAERLVDLSLK 939
              V         + G +++A ++ V    R ++ SLK
Sbjct: 1350 KPVAKDKIKDMYKEGDIVKAKVVSVNPTARRINFSLK 1386



 Score = 41.6 bits (96), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 70/364 (19%), Positives = 144/364 (39%), Gaps = 36/364 (9%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT-TNWKNDYNQHKK 372
            +S+D +  G      V +I +  V ++      G VD   L +     +  + ++     
Sbjct: 1035 LSLDKVTEGSSYVAFVNNIADRYVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGSA 1094

Query: 373  VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVG--------DIYDQSKVVRVDRGLG 424
            +  R+  VD  +  + LT    +       + +KVG         I+D S VV+V+  + 
Sbjct: 1095 LKVRVKAVDIAAGRLDLTAASTVTGKTLSLADLKVGYVLPARVTKIHDASIVVQVNENIA 1154

Query: 425  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR------HLEGLAT 478
                         A + +  +A++  +    +YK+G  +RV ++          L    +
Sbjct: 1155 -------------APIFLERLADDYDKAKPSEYKQGDVLRVCVIEVDIPNKKLGLSARPS 1201

Query: 479  GILKAS--AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
             +L ++    + ++   + +K   VV+G +  +   G  V+    V+    + ++S+  I
Sbjct: 1202 KVLSSTLPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRVSNLSDSYI 1261

Query: 537  VKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
                  F V   +  +++  K   +   +T K + ++     +  + +     I    + 
Sbjct: 1262 KDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQGNYVEILEFGDMKAGQIVTAKVR 1321

Query: 595  KIEKHGCF--VRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQVVKCRIMSSIPASRRI 650
            K+ + G F  V   N V G    S+L   P  +     MY  G +VK +++S  P +RRI
Sbjct: 1322 KVAEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRI 1381

Query: 651  NLSF 654
            N S 
Sbjct: 1382 NFSL 1385



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 156/368 (42%), Gaps = 32/368 (8%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYI---LHFGLPSFTGFLP-RNNLAENSGID--VKPGL 278
            LSL+ V EG    A+V +I D  Y+   L   +     FL   ++L + S ++     G 
Sbjct: 1035 LSLDKVTEGSSYVAFVNNIADR-YVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGS 1093

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             L+  V+++D     + L     T +  VT   K +S+  L  G ++  RV  I +  ++
Sbjct: 1094 ALKVRVKAVDIAAGRLDL-----TAASTVTG--KTLSLADLKVGYVLPARVTKIHDASIV 1146

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            +         + +  L + +      ++Y Q   +   ++ VD  ++ +GL+  P  + +
Sbjct: 1147 VQVNENIAAPIFLERLADDYDKAK-PSEYKQGDVLRVCVIEVDIPNKKLGLSARPSKVLS 1205

Query: 399  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVAEEEVRK 452
               P    + +   Q KV +V R  G +  I    V          YV +S++++  ++ 
Sbjct: 1206 STLPVKDPIIEDKAQLKVHQVVR--GFIKKIADNGVYVRLGPHVETYVRVSNLSDSYIKD 1263

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
             +  +     V  +I+  +  +  A   LK S  +G    +    D+K G +V  KV  V
Sbjct: 1264 WKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQGNYVEILEFGDMKAGQIVTAKVRKV 1323

Query: 510  DSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVK--SKRITV 563
              FG   +V     V  LC +  +++  + K   K  +K G  +  +V+ V   ++RI  
Sbjct: 1324 AEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRINF 1383

Query: 564  THKKTLVK 571
            + K + VK
Sbjct: 1384 SLKYSQVK 1391


>gi|302424003|ref|XP_003009828.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
 gi|261361662|gb|EEY24090.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
          Length = 1789

 Score =  196 bits (498), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 335/1377 (24%), Positives = 576/1377 (41%), Gaps = 175/1377 (12%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
            D+ P+FPRGGG  LT  E+ +I  E  A+ +A+  G     +K K K E++    +    
Sbjct: 64   DEEPMFPRGGGSVLTPLEQKQIQLE--AKADALREGEFDTEEKTKHKKEKRRKSKLGAFE 121

Query: 109  SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                   S +       +  K ++ G  + G V+ ++  ++ I LP  L G    A A+ 
Sbjct: 122  DTKKKSSSDEDGTKIEALNYKRLAKGSVVLGQVSAISHHNITIALPNNLSGNVSIA-AIS 180

Query: 169  PILDNEIEANEDNL----------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKI 212
             ++  +I+   +                  L ++F VGQ V   VL   + +    K  I
Sbjct: 181  NVVTAKIQQAAEASDDDDSADENDDDDDIELNSLFEVGQYVRAYVLSTKEGEGSGKKNHI 240

Query: 213  WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AEN 269
             LSLR      G+S   V     + A V S++DHGY +  G+ +    GFLP+ ++ +E 
Sbjct: 241  ELSLRPEDANSGMSKNDVVANATVMAAVTSVQDHGYEMELGVDNKKLKGFLPKKDVGSEV 300

Query: 270  SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV 329
              + ++PG +   +V+S+  + K+  L  D + + K      +  +++   PG +V   V
Sbjct: 301  DELRLQPGAVSLCLVKSV--SGKIAQLCLDSEKLGKADNIATEATTVNTFQPGTVVDVLV 358

Query: 330  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AV 387
             S    G++   L +   T D+ H        +    Y    +V AR++   P ++   +
Sbjct: 359  TSTTGRGLLGKILGHLPVTADLIHSGAGPDAVDLDAKYKVGSRVKARVICTFPNAKNPKL 418

Query: 388  GLTLNPYLLHNRA----------PPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
            G++L P+++  +A          PP +V  +    D+  V +V+  +GL +D+    +S 
Sbjct: 419  GISLLPHIIKLQAKKAGKGGQAKPPLNVLPIAVRVDKCIVRKVEPEIGLYVDVGVAGLS- 477

Query: 437  PAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
              +V IS V + +V  L +    +KEGS  R R++G+   +G+     + +  E      
Sbjct: 478  -GFVHISKVKDGKVEALYESSGPFKEGSVHRGRVIGYSAFDGMYLMTFEPTIIEQQFIRL 536

Query: 494  SDVKPGMVV-----KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
             DV  G +V     K  V      G +V+   G+       H ++  +  P KKF+ G  
Sbjct: 537  EDVPAGEIVSCTIEKVVVGGQGVSGLVVKVAEGITGYVHETHFADVRLQHPEKKFREGMT 596

Query: 549  LVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
            +  RVL V+ ++  + +T KKTLV S   I+ S+ E        G I+ I  HG  + FY
Sbjct: 597  VKARVLSVRPRKRQMRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFY 656

Query: 607  NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
             GV+G+ P S++      +P   + VGQVV   I+   P ++++ +S    P+    D  
Sbjct: 657  KGVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHILEVDPENQKLLVS-CKDPSAFGLDKQ 715

Query: 667  VKL-----GSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIKP 720
              L     GS+VSG   V+  +   V+V   G + K  +P   L D  + A   +S +K 
Sbjct: 716  AALKALSVGSIVSG--KVIQKSDDDVHVELDGSNLKAILPLGQLTD--KSANKSQSALKR 771

Query: 721  ---GYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNII 773
               G     LLVLD NE    + LS+K SL+ + +  +L    +     + V G++ +I 
Sbjct: 772  IHMGQTLTDLLVLDKNERRRAITLSSKPSLVEAGKTDKLIRTYADAKVGAEVPGFISSIR 831

Query: 774  ETGCFVRFLGRLTG--FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL--- 828
                 VRF G L G  F  R    D ++          QS+   I  ++ E  R+ +   
Sbjct: 832  PGAVLVRFGGNLVGVMFKTRLPVEDQEKEGFG--LRKDQSITVRIRAIDLERTRLVVDPL 889

Query: 829  -----------------SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
                             +  Q+     D +F Q   ++E KI  +  ++ N      VE 
Sbjct: 890  TAELPSNEVKPKKEKESARPQAHGPVQDITFGQ---IVEAKIVGIHDTQLN------VE- 939

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
                  ++G+V  S  F    S+++  D    ++  +  G TV     ++A  L  +K  
Sbjct: 940  --TADKVQGRVDISQIFD---SWDKIKDPEEPLSQFK-KGDTVR----VRAIGLHDSKDH 989

Query: 932  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS-------KDLGVHQTVNAIVEIVKEN 984
            R +  S         R  NS  +   K    EA        +DL V  T  A V     N
Sbjct: 990  RFLAFS--------HRSYNSVLEFTAKASDIEADVLKPLSLEDLEVGSTHVAFVNNASRN 1041

Query: 985  YLVLSL-PEYNHSIGYASVSDYNTQKFPQ--KQFLNGQSVIATVMALPSSSTAGRLLLLL 1041
             L  ++ P     I    VSD +T K       F  G ++   V+A+     A R +L L
Sbjct: 1042 GLWANISPVVRGRINAMDVSD-DTSKINDVINNFPIGTALKVRVIAV----DAKRGVLDL 1096

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
             A S++  + +  + K +    G +V+     +   ++ +K G    G +H+ +++DD  
Sbjct: 1097 SARSDSSAAVTWDSIKPNQVLAGCVVK-----VNERQIMVKLGSNVAGHVHLVDMSDDFG 1151

Query: 1102 NVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSML--TVSEIGSKLLFE 1157
            +V  N    +  G  +   ++   KSNK          LS +PS +  + S I    +  
Sbjct: 1152 DV--NTL-KYDEGDAIQVSVVEVDKSNK-------RVRLSTRPSRVLNSSSPITDSEITS 1201

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
               V  G  V G+V  V ++   + +   + A + I  S      L+E++  F + + V 
Sbjct: 1202 VKQVVSGSTVRGFVKHVADKGVFVLLGGSVSALVKI--SNLSDRFLKEWKEHFQVDQLVK 1259

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVG 1275
            G VLS+++    + L L+          VD +   ++T+  I    IV G+I K+     
Sbjct: 1260 GRVLSVDEGAGQVELSLK-------SSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGA 1312

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
             +VV    ++ G  H +E+ +  V            D    Y  G  VK KVL + R
Sbjct: 1313 FIVVDGSDNVSGLCHRSEMADSPVE-----------DARKLYQAGDVVKAKVLTLDR 1358



 Score =  133 bits (335), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 182/795 (22%), Positives = 351/795 (44%), Gaps = 118/795 (14%)

Query: 736  NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
             + L+ K +L+NS   +      +       G + +I   G  + F   + G+ P S+  
Sbjct: 610  QMRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMS 669

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            +    D  + + VGQ V  +IL+V+ E  ++ +S K               F L+++ A+
Sbjct: 670  EAFIQDPKEHFKVGQVVNVHILEVDPENQKLLVSCKDPSA-----------FGLDKQAAL 718

Query: 856  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 915
                          +   +GS++ GKV + +D  V V  +  S++   +   QL   T +
Sbjct: 719  --------------KALSVGSIVSGKVIQKSDDDVHVELD-GSNLKAILPLGQL---TDK 760

Query: 916  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASK------ 966
            S +  Q+A+  +   + L DL    + +D+    N  R+A     K    EA K      
Sbjct: 761  SANKSQSALKRIHMGQTLTDL----LVLDK----NERRRAITLSSKPSLVEAGKTDKLIR 812

Query: 967  ---DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQKQFLNGQS 1020
               D  V   V   +  ++   +++        + + +   V D   + F  ++    QS
Sbjct: 813  TYADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPVEDQEKEGFGLRK---DQS 869

Query: 1021 VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------YDV--GSLVQA 1069
            +   + A+    T    L++    +E  ++  K  K+K S          D+  G +V+A
Sbjct: 870  ITVRIRAIDLERTR---LVVDPLTAELPSNEVKPKKEKESARPQAHGPVQDITFGQIVEA 926

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
            +I  I   +L ++      GR+ I+++ D  DK    E   S FK G TV  R I   + 
Sbjct: 927  KIVGIHDTQLNVETADKVQGRVDISQIFDSWDKIKDPEEPLSQFKKGDTVRVRAIGLHDS 986

Query: 1128 PDMK------KSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
             D +      +S+  + E + K S +  +++   L  E  D+ +G     +V        
Sbjct: 987  KDHRFLAFSHRSYNSVLEFTAKASDIE-ADVLKPLSLE--DLEVGSTHVAFVNNASRNGL 1043

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
               IS  ++ ++  +D + + S++ +    F IG A+   V++++ ++ +L L  R    
Sbjct: 1044 WANISPVVRGRINAMDVSDDTSKINDVINNFPIGTALKVRVIAVDAKRGVLDLSAR---- 1099

Query: 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
              SD +  ++ D+    I    ++ G + K+      ++V++G ++ G VH  ++ +   
Sbjct: 1100 --SDSSAAVTWDS----IKPNQVLAGCVVKV--NERQIMVKLGSNVAGHVHLVDMSD--- 1148

Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1359
                   D G  + L  YDEG  ++  V+E+ ++ +    V LS R S       NSS  
Sbjct: 1149 -------DFGDVNTLK-YDEGDAIQVSVVEVDKSNK---RVRLSTRPS----RVLNSSSP 1193

Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1419
             TD       +  ++ +     V+G+VK+V  KG F++L   + A V +SNLSD +++  
Sbjct: 1194 ITD-----SEITSVKQVVSGSTVRGFVKHVADKGVFVLLGGSVSALVKISNLSDRFLKEW 1248

Query: 1420 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479
            ++ F + +LV GRVLSV+  + +VE++LK+S     +   +    ++    IV G+I++V
Sbjct: 1249 KEHFQVDQLVKGRVLSVDEGAGQVELSLKSS-VVDDNYKPLKTYKDIKPNQIVTGKIRKV 1307

Query: 1480 ESYGLFITIENTNLV 1494
            E +G FI ++ ++ V
Sbjct: 1308 EDFGAFIVVDGSDNV 1322



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 14/221 (6%)

Query: 456  KYKEGSCVRVRILGFR------HLEGLATGILKASA--FEGLVFTHSDVKPGMVVKGKVI 507
            KY EG  ++V ++          L    + +L +S+   +  + +   V  G  V+G V 
Sbjct: 1157 KYDEGDAIQVSVVEVDKSNKRVRLSTRPSRVLNSSSPITDSEITSVKQVVSGSTVRGFVK 1216

Query: 508  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTH 565
             V   G  V   G V AL  + ++S+  + +  + F+V   +  RVL V   + ++ ++ 
Sbjct: 1217 HVADKGVFVLLGGSVSALVKISNLSDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQVELSL 1276

Query: 566  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF--VRFYNGVQGFAPRSELGLDPG 623
            K ++V      L +Y +     I  G I K+E  G F  V   + V G   RSE+   P 
Sbjct: 1277 KSSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMADSPV 1336

Query: 624  CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
             +   +Y  G VVK ++++     +RI  SF +KP    ED
Sbjct: 1337 EDARKLYQAGDVVKAKVLTLDRNKKRI--SFGLKPAYFDED 1375



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 31/189 (16%)

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            S V G+V ++ + G FV   G ++     S   D    +  + + V Q V+  +L V+  
Sbjct: 1209 STVRGFVKHVADKGVFVLLGGSVSALVKISNLSDRFLKEWKEHFQVDQLVKGRVLSVDEG 1268

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             G++ LSLK S                            N   LK  +      ++ GK+
Sbjct: 1269 AGQVELSLKSSVVDD------------------------NYKPLKTYKDIKPNQIVTGKI 1304

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
             +  DFG  +  +   +V G     ++A + VE       +G V++A +L + + ++ + 
Sbjct: 1305 RKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYQAGDVVKAKVLTLDRNKKRIS 1364

Query: 936  LSLKTVFID 944
              LK  + D
Sbjct: 1365 FGLKPAYFD 1373


>gi|66807509|ref|XP_637477.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4]
 gi|60465898|gb|EAL63968.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4]
          Length = 804

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 151/571 (26%), Positives = 269/571 (47%), Gaps = 60/571 (10%)

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPILDNEI 175
           +P+ A ++  K++  GM +     +V E D+ I LP GL+G  +    +D+    +   +
Sbjct: 150 IPKSACRLLKKDLHTGMVVLATFEQVTEMDITISLPFGLKGYVKFNEISDSFTEWMKETL 209

Query: 176 EANEDNLLPT--------------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
           +  ++N   T              +F+ GQ++ C ++ L D     G   +  +LR  L+
Sbjct: 210 KREDENEKSTNFRKMKIISDQVRKMFYKGQMLKCAIVGLTDHHTIEG---LHCTLRPELV 266

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKP- 276
             G S++T  E M +   ++SI+D GYI+ FG   + GFL  +N      + S  D    
Sbjct: 267 NVGSSIDTFSEDMTIHGCIESIQDKGYIVSFGSKDYNGFLEFSNTCYYYPDQSSDDQNQL 326

Query: 277 --GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
             G  ++ +++SID++ K   L+     VS+   K+ + I+++ +  GM+V T+V  +L 
Sbjct: 327 YIGQPIESLIQSIDKSTKTFKLTISHPLVSRSTIKNSETITMESIKAGMLVETKVLRVLS 386

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLT---- 390
           NG+ L FL +F G + I H QN   T      Y +++ V ARILFVD   + +GL+    
Sbjct: 387 NGLHLGFLDFFAGDIFILHSQNPIET------YKENQGVKARILFVDQVHKRIGLSTLGH 440

Query: 391 ---LNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST-----PVSTP----A 438
                PY      P  +V+ G +     + R++  L +++   ST     P+  P     
Sbjct: 441 VLGFKPYPFGTTKPGQYVESGKL----TIERIE-PLEMIVTTESTVVQSNPMKAPLLLRG 495

Query: 439 YVTISDVAE--EEVRKLEKKYKEGSCV--RVRILGFRHLEGLATGILKASAFEGLVFTHS 494
           Y+ I ++     ++ K   ++K+   +  R R+    HL+G+ T   +    E   ++++
Sbjct: 496 YIHIEELESGVNDLTKASNQFKKTEPLEKRCRVKHLDHLDGMVTYTARTRELEKKFYSYN 555

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+  GMVV+G +  V +    V+    +  +    HM++  I  P + FKVGA +  R++
Sbjct: 556 DLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVKVRII 615

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V+   KR+ +T KK+L+ S+  I++         I+HG ITK  +   FV FYN   G 
Sbjct: 616 NVEPDKKRLQLTLKKSLIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVSFYNNSFGV 675

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
                L           + VG+ V  + + S
Sbjct: 676 VEAQNLSNSKIESVQKQFPVGRTVLAKTLFS 706



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 20/177 (11%)

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
             QF K + LE    V+   H        LDGM +  +     +     K      DLS  
Sbjct: 514  NQFKKTEPLEKRCRVKHLDH--------LDGMVTYTARTRELE-----KKFYSYNDLSCG 560

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            M+VQG ++ V +    + L+  +   V   +++D  +  P + F +G  V  R+++VEP 
Sbjct: 561  MVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVKVRIINVEPD 620

Query: 1440 SKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             KR+++TLK    ++   SE   I + +   +G I  G I +   + +F++  N + 
Sbjct: 621  KKRLQLTLK----KSLIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVSFYNNSF 673


>gi|68466849|ref|XP_722620.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
 gi|68467128|ref|XP_722479.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444457|gb|EAL03732.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444607|gb|EAL03881.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
          Length = 1722

 Score =  194 bits (493), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 186/683 (27%), Positives = 318/683 (46%), Gaps = 40/683 (5%)

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
           L  IF +G  +   +    +D K   K++I L++    + + L ++ +    +L   VKS
Sbjct: 177 LFKIFKLGSWLKAKITTSHEDYK--NKKRIELTIEPESVNENLEVDDLIVNNILQCSVKS 234

Query: 243 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSD 299
           IEDHG IL  G   ++GF+    L  N+ IDV    PGL++   + S    R  + L   
Sbjct: 235 IEDHGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPT 292

Query: 300 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
             TVS   T      SID + PG++V   +  + ENG++        GT+ +  +QN F 
Sbjct: 293 TATVSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FE 351

Query: 360 TTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIY 411
               K+ Y     V AR+L V     ++ + L++ P++L      S  +      +G ++
Sbjct: 352 LKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTEALEAFPIGHVF 411

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471
           DQ KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + R++GF 
Sbjct: 412 DQVKVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFN 465

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPL 528
            ++ L     ++   +       DV  G ++   +++ V  D  G  V+F    K   P 
Sbjct: 466 EVDNLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPG 525

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRL 587
             MS+ ++V P +KF+VG +   R+L    KR  VT +K LV      ILS   +A    
Sbjct: 526 NQMSDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGF 585

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            T+  + K   +GC V F+  ++ F P++E+      + SS   +GQ+VK RI+      
Sbjct: 586 KTNAIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQ 645

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSG------VVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +R+ ++ + + + +S     ++  LVSG      VV   T ++V+V  +   + +G I  
Sbjct: 646 KRLVVT-LKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVE-LEGSHLRGVIYD 703

Query: 702 EHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSAQQ--LPSDA 756
             L+D + E    +   +  G E  ++L+LD +  +  ++ +AK SLI++++    P + 
Sbjct: 704 GQLSDGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEF 762

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S I  N VV GYV ++   G FV F GRLTG             DLSK ++  QS+   +
Sbjct: 763 SDIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRV 822

Query: 817 LDVNSETGRITLSLKQSCCSSTD 839
           L V+ E  R  L+L  S   + D
Sbjct: 823 LSVDKENERFLLTLNNSSSFTKD 845



 Score =  145 bits (365), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 246/1058 (23%), Positives = 440/1058 (41%), Gaps = 173/1058 (16%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PG++V   +  V   G + +  G V     L  +  FE+ +   K+ +G+ +  RVL 
Sbjct: 312  IQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQNFELKELKHKYAIGSTVKARVLA 371

Query: 556  VKSKRITVTHKKTLVKS------KLAILSSYAEATDRL-ITHGW----ITKIEKHGCFVR 604
            V  K  T    K L+ S      +L   SS  EA +   I H +    +   +KH  +V 
Sbjct: 372  VLLKNGT----KKLILSILPHVLQLGDDSSQTEALEAFPIGHVFDQVKVIGNDKHYVYVS 427

Query: 605  F-YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
            F  + + G   +S+   +        Y +G   K R++        + L+F  K      
Sbjct: 428  FGSSSLFGQIHQSKFDDNKSLLD---YSIGSTHKSRVIGFNEVDNLLILTFESKVIDAEY 484

Query: 664  DDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYS---------KGTIPTEHLADHLEHAT 712
             ++  V +G L+        PN  ++ V+  G           KG +P   ++D      
Sbjct: 485  LNVRDVPIGKLL--------PNVEILKVLEDGVGINVKFFDEFKGFVPGNQMSDI----- 531

Query: 713  VMKSVIKPGYEF-----DQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASH----IHPN 762
                ++ P  +F      +  +L+      L++ + +L+N    ++ SD          N
Sbjct: 532  ---KLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKTN 588

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            ++V  +V N    GC V F G L  F P+++  +    D S    +GQ V+  ILDVN E
Sbjct: 589  AIVEKFVPN----GCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKE 644

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              R+ ++LKQS    ++ S  Q++     +I+ L S K            I+ +V+  K 
Sbjct: 645  QKRLVVTLKQS----SELSNAQKN-----EISKLVSGKS-----------IVKTVVVEKT 684

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAER 932
             +S    V+V  E  S + G I   QL+    E           G  ++  ILD     R
Sbjct: 685  KDS----VLVELE-GSHLRGVIYDGQLSDGNYEQNRALAKRLAIGETLEVLILDKDLKAR 739

Query: 933  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 992
             V  + K   ID          A K K       D+ V+  V   V+ V    L ++   
Sbjct: 740  TVIATAKKSLID----------ASKSKSFPVEFSDIAVNDVVRGYVKSVTSLGLFVTFTG 789

Query: 993  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
                +  A     N  +   K+F   QS+   V+++   +   R LL L   S       
Sbjct: 790  RLTGLILAKYVTKNANEDLSKKFHKYQSINCRVLSVDKENE--RFLLTLNNSSSFTKDDE 847

Query: 1053 K-----RAKKK--SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND---DKSN 1102
            +      A KK  + Y  G   +  I  +K  +L ++      GR+ IT+      D  N
Sbjct: 848  QLIKPIDATKKIVADYQPGETTKVVIKAVKGTQLNVQLADNLQGRVDITQCFKSIKDIKN 907

Query: 1103 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE-------IGSKLL 1155
            + + L S+F+ G+T+  ++I   +  +   +FL     K +  T+ E       I +KLL
Sbjct: 908  LHQPLASSFQKGETLDVKVIGIHDAKN--HTFLPITHRKSNRTTILELSLNNPQINNKLL 965

Query: 1156 --FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG 1213
               +  D   G  V  +V  + N    ++IS  +K ++ +LD   + S  Q+   +  IG
Sbjct: 966  TDLKLADFKQGDEVLAFVNNITNGMVWVSISPTIKGRIPMLDLTEDGSIFQDIDNKLPIG 1025

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
             A+   V  ++ + ++L L  R       +K  D+  D  QT+         RI KI   
Sbjct: 1026 NAINVKVKQVDLQHQILVLTARK---NFIEKFEDVRQD--QTY-------PARIIKIKPN 1073

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1333
               ++V++G ++        + +  V+D L+ Y + + D +  ++   +V  KVL+I  T
Sbjct: 1074 --HVLVELGNNV--------IASSFVTDALNDYSD-KLDHV--FNVNDYVSAKVLDIDST 1120

Query: 1334 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1393
             +    + +SLR               TD     K +  I DL+   +++G+VKN+++ G
Sbjct: 1121 NK---RISVSLR---------------TDKAGSDKVINSISDLTRGQVIKGFVKNISNNG 1162

Query: 1394 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453
             ++ L R + A V +S+LSD Y++  +  F   + V G++++ +    R+ +TLK S+  
Sbjct: 1163 VYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQ-EGRILMTLKESEV- 1220

Query: 1454 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                  +    +L +GDI  G +     +G+F+ ++ T
Sbjct: 1221 NGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGT 1258



 Score = 48.1 bits (113), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 113/291 (38%), Gaps = 48/291 (16%)

Query: 680  VTPNAVVV----YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS 735
            + PN V+V     VIA  +   T      +D L+H   +   +          VLD +S+
Sbjct: 1070 IKPNHVLVELGNNVIASSFV--TDALNDYSDKLDHVFNVNDYVSAK-------VLDIDST 1120

Query: 736  NLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
            N  +S       + + ++ +  S +    V+ G+V NI   G +V     +      S  
Sbjct: 1121 NKRISVSLRTDKAGSDKVINSISDLTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDL 1180

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
             D    D    +   Q V   I++   E GRI ++LK+S  +             E KI 
Sbjct: 1181 SDSYLKDWQNFFKPNQPVIGKIVNCKQE-GRILMTLKESEVNG------------ELKI- 1226

Query: 855  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 914
                       +K  +   IG + EG V  + DFGV V  +   +V G   H +++   V
Sbjct: 1227 -----------MKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHSEISENDV 1275

Query: 915  E-------SGSVIQAAILDVAKAERLVDLSLKTVFI--DRFREANSNRQAQ 956
            +       +G  ++  IL +   +R + L +K  +   D  +E N +   +
Sbjct: 1276 DNVKSLFGTGDRVKVKILKIDSEKRQLSLGMKASYFITDSGKEDNDDEDVE 1326



 Score = 47.0 bits (110), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            SD+  G V+KG V  + + G  V     + AL  +  +S+  +      FK    ++ ++
Sbjct: 1143 SDLTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKI 1202

Query: 554  LGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQ 610
            +  K + RI +T K++ V  +L I+ ++ +     I  G +T     G FV+      V 
Sbjct: 1203 VNCKQEGRILMTLKESEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVS 1262

Query: 611  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G    SE+  +      S++  G  VK +I+  I + +R  LS  MK +
Sbjct: 1263 GLCHHSEISENDVDNVKSLFGTGDRVKVKIL-KIDSEKR-QLSLGMKAS 1309


>gi|393244266|gb|EJD51778.1| nucleic acid-binding protein [Auricularia delicata TFB-10046 SS5]
          Length = 1472

 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 224/860 (26%), Positives = 368/860 (42%), Gaps = 97/860 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFE---AVERGLHKKNKKKKKKTERKANETVDDLGSL 110
           FPRGGG S T  E   I  E   E E     E     K  K K + E+K  +T  D    
Sbjct: 49  FPRGGGSSFTPAEHKAIRHEAALEAEDELRFEDSQATKKSKSKPRVEKKTKKTKRDAKDG 108

Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI 170
             D            +  K ++ GM++   V ++    LV+ LP  L G         PI
Sbjct: 109 GEDAREKSDTIRVEHLNYKRLTPGMRVLCQVTQILPLGLVVSLPNQLLGNI-------PI 161

Query: 171 --LDNEIEANEDNL------------------------LPTIFHVGQLVSCIVLQLDDDK 204
             +  E+ A  + +                        LP IF VGQ V+ +V  +    
Sbjct: 162 THISKELTARLEAMEEAMDEDDNDEDSSDAGPSSGIPELPDIFRVGQYVTAVVSTVHAAG 221

Query: 205 KEI-----------GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG 253
             +              ++ LSL    + +G+S   +  G +L + +KS+EDHGY+L+FG
Sbjct: 222 TSVDPMLKRPDVDRSSHRVELSLVPEEVNEGVSKRDLGPGFILASTIKSVEDHGYVLNFG 281

Query: 254 LPSFTGFLPRNNLAENS--GIDVKP---GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
           +P  TGFL   + A+N   G++ K    G+ LQ  +       ++  +S +P TVS  + 
Sbjct: 282 IPEATGFLSFKD-AKNGQHGLNAKKLPIGMALQVCITKKSDNGRIYTVSIEPATVSAGLL 340

Query: 309 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
            ++   S+  ++PG +V   + ++L  G+ L  + +F GT+D +HL       +    + 
Sbjct: 341 SEVS--SVSSVLPGTLVDALITAVLPTGLNLQLMGFFEGTIDQYHLG----LGDVVGRFK 394

Query: 369 QHKKVNARILF--VDPTSRAVGLTLNPYL--LHNRAPPSHV-----KVGDIYDQSKVVRV 419
              K+ AR+++     + +   L+  P++  LH     S        +G + D  KVVRV
Sbjct: 395 LGDKIKARVIYEVTHSSPKRFALSALPHVVSLHGATAGSSALYDAFPMGTVLDAIKVVRV 454

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGL 476
           +   GLL  I        A+V IS V++E V  L      +K G+  R R+ GF  L+GL
Sbjct: 455 EPERGLLCQIQD---GIAAFVHISQVSDEHVNTLSATAGTWKVGTVHRARVTGFFGLDGL 511

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
               L+ S  +      SDV  G  +KG V  +      V   G V A+    H ++  +
Sbjct: 512 VQVSLRQSILDQKFMHVSDVTVGERMKGTVKRLADNALFVSVSGSVDAVVWPNHYADITL 571

Query: 537 VKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
             P K+FK G  +  RVL V  +  R+ +T KKTLV+S L I+S   EAT   ITH  + 
Sbjct: 572 RHPEKRFKAGGTVKGRVLVVDPERNRLCLTLKKTLVESDLPIVSKIEEATPGTITHAVVF 631

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPAS- 647
           K    G  V F+N ++ F P+ E+  D   + +  + +G+VV+ +I+      S I AS 
Sbjct: 632 KNLDKGLLVEFFNNLRAFVPQREMN-DSAVQSADDFPIGKVVRVKILDVNAETSKIVASI 690

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
           R+  L+F         DD    G++V G V  +     ++ ++     +  +   +LA H
Sbjct: 691 RQGALNFQSAIDISGVDD----GAVVHGTVAALHKEHAMLSLVPSKV-RALLSFANLAKH 745

Query: 708 LEHATVM-KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS------HIH 760
                   K+ +K G    +L V+   +    +   Y     A++L   A+       + 
Sbjct: 746 RNLPLAQAKAALKVGEGLKELTVVGRNAEKGFVLVGYKDEKRARRLSLSANSGLAIDKVT 805

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
              V+ G V +    G  VR   +++G        D +    ++   VG   +  +L V+
Sbjct: 806 VGQVMPGLVVSHGRKGAVVRISSKISGSVHALDVAD-ELPPKAQLPPVGTMTQFAVLAVD 864

Query: 821 SETGRITLSLKQSCCSSTDA 840
            +  ++TLS + S  S   A
Sbjct: 865 KDRKQLTLSSRPSNVSPESA 884



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 24/221 (10%)

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            G  G VV+I   + G VH      + V+D L    + Q  P+     G   +  VL + +
Sbjct: 818  GRKGAVVRISSKISGSVH-----ALDVADELP--PKAQLPPV-----GTMTQFAVLAVDK 865

Query: 1333 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1392
              +     +L+L S    +S  ++ ++        + +  + DL     ++G++K+V   
Sbjct: 866  DRK-----QLTLSSRPSNVSPESAGEVKD------REINSLGDLKVGQRLRGFIKSVADH 914

Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            G F+ + R LDA+V +  L D +V+  + +F +   V G+++SV+    +VE++L++ D 
Sbjct: 915  GLFVNIGRNLDARVQIKELFDDFVKDWKSKFNVDDRVHGQIISVDVEKNQVEMSLRSGD- 973

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            R  +Q E   L++   G  V   +KR E+YG+F+ IE T +
Sbjct: 974  RKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQIEGTKI 1014



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 22/267 (8%)

Query: 217  RLSL-LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGID 273
            RLSL    GL+++ V  G V+   V S    G ++       +G +   ++A+       
Sbjct: 790  RLSLSANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRIS-SKISGSVHALDVADELPPKAQ 848

Query: 274  VKP-GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI----DLLVPGMMVSTR 328
            + P G + Q  V ++D+ RK + LSS P  VS     ++K   I    DL V G  +   
Sbjct: 849  LPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVSPESAGEVKDREINSLGDLKV-GQRLRGF 907

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
            ++S+ ++G+ ++        V I  L + F   +WK+ +N   +V+ +I+ VD     V 
Sbjct: 908  IKSVADHGLFVNIGRNLDARVQIKELFDDF-VKDWKSKFNVDDRVHGQIISVDVEKNQVE 966

Query: 389  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD------RGLGLLLDIPSTPVSTPAYVT- 441
            ++L           + V+   + D +K  +VD         G+ L I  T +S   + + 
Sbjct: 967  MSLR----SGDRKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQIEGTKISGLCHKSN 1022

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRIL 468
            ISD  + +V +  K +KEG  V+  IL
Sbjct: 1023 ISDTKDADVERAIKNFKEGDRVKAMIL 1049



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 44/298 (14%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V++GQ + G V     + A++ IS  +   +  LD A    EL    +   +G      V
Sbjct: 804  VTVGQVMPGLVVSHGRKGAVVRISSKISGSVHALDVA---DELPPKAQLPPVGTMTQFAV 860

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTV-DISNDNMQTFIHEGDI-VGGRISKILSGVG--G 1276
            L+++K++K L L  RP    +S ++  ++ +  + +    GD+ VG R+   +  V   G
Sbjct: 861  LAVDKDRKQLTLSSRP--SNVSPESAGEVKDREINSL---GDLKVGQRLRGFIKSVADHG 915

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            L V IG +L  RV   EL +  V D  S ++      +     GQ +   V +       
Sbjct: 916  LFVNIGRNLDARVQIKELFDDFVKDWKSKFN------VDDRVHGQIISVDVEK------- 962

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
               VE+SLRS    ++          V+T G     + D +    V   VK   + G F+
Sbjct: 963  -NQVEMSLRSGDRKVAQ---------VETKG-----LADFAKGQKVDAIVKRTETYGIFL 1007

Query: 1397 MLS----RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
             +       L  K  +S+  D  VE   K F  G  V   +LS++   +R++  LK S
Sbjct: 1008 QIEGTKISGLCHKSNISDTKDADVERAIKNFKEGDRVKAMILSIDLEKRRIDFGLKPS 1065



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 1060 SYDVGSLVQA-EITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
            ++ +G+++ A ++  ++P   L  +   G    +HI++V+D+  N +      +K+G   
Sbjct: 439  AFPMGTVLDAIKVVRVEPERGLLCQIQDGIAAFVHISQVSDEHVNTLSATAGTWKVGTVH 498

Query: 1118 TARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1177
             AR+             L ++S++ S+L       +      DV++G+R+ G V ++ + 
Sbjct: 499  RARVTGF-----FGLDGLVQVSLRQSIL------DQKFMHVSDVTVGERMKGTVKRLADN 547

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
               +++S  + A   +  + Y    L+  ++RF  G  V G VL ++ E+  L L L+
Sbjct: 548  ALFVSVSGSVDA--VVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLK 603



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 116/553 (20%), Positives = 214/553 (38%), Gaps = 83/553 (15%)

Query: 435  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 491
            S  A V  +  A+  +R  EK++K G  V+ R+L            LK +  E    +V 
Sbjct: 556  SVDAVVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLKKTLVESDLPIVS 615

Query: 492  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
               +  PG +    V      G +V+F   ++A  P   M++   V+    F +G  +  
Sbjct: 616  KIEEATPGTITHAVVFKNLDKGLLVEFFNNLRAFVPQREMND-SAVQSADDFPIGKVVRV 674

Query: 552  RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY--- 606
            ++L V ++  +I  + ++  +  + AI  S  +  D  + HG +  + K    +      
Sbjct: 675  KILDVNAETSKIVASIRQGALNFQSAIDISGVD--DGAVVHGTVAALHKEHAMLSLVPSK 732

Query: 607  -NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA--------------SRRIN 651
               +  FA  ++    P  +  +   VG+ +K   +    A              +RR++
Sbjct: 733  VRALLSFANLAKHRNLPLAQAKAALKVGEGLKELTVVGRNAEKGFVLVGYKDEKRARRLS 792

Query: 652  LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
            LS           D V +G ++ G+V        VV + +K    G++    +AD L   
Sbjct: 793  LS----ANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRISSK--ISGSVHALDVADELPP- 845

Query: 712  TVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV----- 764
               K+ + P     Q  VL  D +   L LS++ S ++     P  A  +    +     
Sbjct: 846  ---KAQLPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVS-----PESAGEVKDREINSLGD 897

Query: 765  ------VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
                  + G++ ++ + G FV     L       +  D    D    + V   V   I+ 
Sbjct: 898  LKVGQRLRGFIKSVADHGLFVNIGRNLDARVQIKELFDDFVKDWKSKFNVDDRVHGQIIS 957

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQ------EHFLLEEKI-AMLQSSKHNGSELKWVEG 871
            V+ E  ++ +SL+     S D    Q        F   +K+ A+++ ++  G  L+    
Sbjct: 958  VDVEKNQVEMSLR-----SGDRKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQ---- 1008

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
             I G+ I G  H+SN     +S  + +DV   I + +        G  ++A IL +   +
Sbjct: 1009 -IEGTKISGLCHKSN-----ISDTKDADVERAIKNFK-------EGDRVKAMILSIDLEK 1055

Query: 932  RLVDLSLKTVFID 944
            R +D  LK  F D
Sbjct: 1056 RRIDFGLKPSFFD 1068


>gi|238882053|gb|EEQ45691.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1726

 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 186/683 (27%), Positives = 318/683 (46%), Gaps = 40/683 (5%)

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
           L  IF +G  +   +    +D K   K++I L++    + + L ++ +    +L   VKS
Sbjct: 181 LFKIFKLGSWLKAKITTSHEDYK--NKKRIELTIEPESVNENLEVDDLIVNNILQCSVKS 238

Query: 243 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSD 299
           IEDHG IL  G   ++GF+    L  N+ IDV    PGL++   + S    R  + L   
Sbjct: 239 IEDHGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPT 296

Query: 300 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
             TVS   T      SID + PG++V   +  + ENG++        GT+ +  +QN F 
Sbjct: 297 TATVSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FE 355

Query: 360 TTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIY 411
               K+ Y     V AR+L V     ++ + L++ P++L      S  +      +G ++
Sbjct: 356 LKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTEALEAFPIGHVF 415

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471
           DQ KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + R++GF 
Sbjct: 416 DQVKVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFN 469

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPL 528
            ++ L     ++   +       DV  G ++   +++ V  D  G  V+F    K   P 
Sbjct: 470 EVDNLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGIGINVKFFDEFKGFVPG 529

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRL 587
             MS+ ++V P +KF+VG +   R+L    KR  VT +K LV      ILS   +A    
Sbjct: 530 NQMSDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGF 589

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            T+  + K   +GC V F+  ++ F P++E+      + SS   +GQ+VK RI+      
Sbjct: 590 KTNAIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDINKEQ 649

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSG------VVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +R+ ++ + + + +S     ++  LVSG      VV   T ++V+V  +   + +G I  
Sbjct: 650 KRLVVT-LKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVE-LEGSHLRGVIYD 707

Query: 702 EHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSAQQ--LPSDA 756
             L+D + E    +   +  G E  ++L+LD +  +  ++ +AK SLI++++    P + 
Sbjct: 708 GQLSDGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEF 766

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S I  N VV GYV ++   G FV F GRLTG             DLSK ++  QS+   +
Sbjct: 767 SDIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRV 826

Query: 817 LDVNSETGRITLSLKQSCCSSTD 839
           L V+ E  R  L+L  S   + D
Sbjct: 827 LSVDKENERFLLTLNNSSSFTKD 849



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 245/1058 (23%), Positives = 440/1058 (41%), Gaps = 173/1058 (16%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PG++V   +  V   G + +  G V     L  +  FE+ +   K+ +G+ +  RVL 
Sbjct: 316  IQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQNFELKELKHKYAIGSTVKARVLA 375

Query: 556  VKSKRITVTHKKTLVKS------KLAILSSYAEATDRL-ITHGW----ITKIEKHGCFVR 604
            V  K  T    K L+ S      +L   SS  EA +   I H +    +   +KH  +V 
Sbjct: 376  VLLKNGT----KKLILSILPHVLQLGDDSSQTEALEAFPIGHVFDQVKVIGNDKHYVYVS 431

Query: 605  F-YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
            F  + + G   +S+   +        Y +G   K R++        + L+F  K      
Sbjct: 432  FGSSSLFGQIHQSKFDDNKSLLD---YSIGSTHKSRVIGFNEVDNLLILTFESKVIDAEY 488

Query: 664  DDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYS---------KGTIPTEHLADHLEHAT 712
             ++  V +G L+        PN  ++ V+  G           KG +P   ++D      
Sbjct: 489  LNVRDVPIGKLL--------PNVEILKVLEDGIGINVKFFDEFKGFVPGNQMSDI----- 535

Query: 713  VMKSVIKPGYEF-----DQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASH----IHPN 762
                ++ P  +F      +  +L+      L++ + +L+N    ++ SD          N
Sbjct: 536  ---KLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKTN 592

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            ++V  +V N    GC V F G L  F P+++  +    D S    +GQ V+  ILD+N E
Sbjct: 593  AIVEKFVPN----GCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDINKE 648

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              R+ ++LKQS    ++ S  Q++     +I+ L S K            I+ +V+  K 
Sbjct: 649  QKRLVVTLKQS----SELSNAQKN-----EISKLVSGKS-----------IVKTVVVEKT 688

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAER 932
             +S    V+V  E  S + G I   QL+    E           G  ++  ILD     R
Sbjct: 689  KDS----VLVELE-GSHLRGVIYDGQLSDGNYEQNRALAKRLAIGETLEVLILDKDLKAR 743

Query: 933  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 992
             V  + K   ID          A K K       D+ V+  V   V+ V    L ++   
Sbjct: 744  TVIATAKKSLID----------ASKSKSFPVEFSDIAVNDVVRGYVKSVTSLGLFVTFTG 793

Query: 993  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
                +  A     N  +   K+F   QS+   V+++   +   R LL L   S       
Sbjct: 794  RLTGLILAKYVTKNANEDLSKKFHKYQSINCRVLSVDKENE--RFLLTLNNSSSFTKDDE 851

Query: 1053 K-----RAKKK--SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND---DKSN 1102
            +      A KK  + Y  G   +  I  +K  +L ++      GR+ IT+      D  N
Sbjct: 852  QLIKPIDATKKIVADYQPGETTKVVIKAVKGTQLNVQLADNLQGRVDITQCFKSIKDIKN 911

Query: 1103 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE-------IGSKLL 1155
            + + L S+F+ G+T+  ++I   +  +   +FL     K +  T+ E       I +KLL
Sbjct: 912  LHQPLASSFQKGETLDVKVIGIHDAKN--HTFLPITHRKSNRTTILELSLNNPQINNKLL 969

Query: 1156 --FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG 1213
               +  D   G  V  +V  + N    ++IS  +K ++ +LD   + S  Q+   +  IG
Sbjct: 970  TDLKLADFKQGDEVLAFVNNITNGMVWVSISPSIKGRIPMLDLTEDGSIFQDIDNKLPIG 1029

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
             A+   V  ++ + ++L L  R       +K  D+  D  QT+         RI KI   
Sbjct: 1030 NAINVKVKQVDLQHQILVLTARK---NFIEKFEDVRQD--QTY-------PARIIKIKPN 1077

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1333
               ++V++G ++        + +  V+D L+ Y + + D +  ++   +V  KVL+I  T
Sbjct: 1078 --HVLVELGNNV--------IASSFVTDALNDYSD-KLDHV--FNVNDYVSAKVLDIDST 1124

Query: 1334 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1393
             +    + +SLR               TD     K +  I DL+   +++G+VKN+++ G
Sbjct: 1125 NK---RISVSLR---------------TDKAGSDKVINSISDLTRGQVIKGFVKNISNNG 1166

Query: 1394 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453
             ++ L R + A V +S+LSD Y++  +  F   + V G++++ +    R+ +TLK S+  
Sbjct: 1167 VYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQ-EGRILMTLKESEV- 1224

Query: 1454 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                  +    +L +GDI  G +     +G+F+ ++ T
Sbjct: 1225 NGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGT 1262



 Score = 48.1 bits (113), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 97/504 (19%), Positives = 189/504 (37%), Gaps = 79/504 (15%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--------FKV 545
            +D +PG   K  + AV      VQ    ++    +     F+ +K  K         F+ 
Sbjct: 865  ADYQPGETTKVVIKAVKGTQLNVQLADNLQGRVDITQC--FKSIKDIKNLHQPLASSFQK 922

Query: 546  GAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITH----------- 590
            G  L  +V+G+   +    + +TH+K+   + L +  +  +  ++L+T            
Sbjct: 923  GETLDVKVIGIHDAKNHTFLPITHRKSNRTTILELSLNNPQINNKLLTDLKLADFKQGDE 982

Query: 591  --GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPA 646
               ++  I     +V     ++G  P  +L  D     +  +   +G  +  ++   +  
Sbjct: 983  VLAFVNNITNGMVWVSISPSIKGRIPMLDLTEDGSIFQDIDNKLPIGNAINVKV-KQVDL 1041

Query: 647  SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV----YVIAKGYSKGTIPTE 702
              +I L    +   + + + V+        +  + PN V+V     VIA  +   T    
Sbjct: 1042 QHQI-LVLTARKNFIEKFEDVRQDQTYPARIIKIKPNHVLVELGNNVIASSFV--TDALN 1098

Query: 703  HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHP 761
              +D L+H   +   +          VLD +S+N  +S       + + ++ +  S +  
Sbjct: 1099 DYSDKLDHVFNVNDYVSAK-------VLDIDSTNKRISVSLRTDKAGSDKVINSISDLTR 1151

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              V+ G+V NI   G +V     +      S   D    D    +   Q V   I++   
Sbjct: 1152 GQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQ 1211

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E GRI ++LK+S  +             E KI            +K  +   IG + EG 
Sbjct: 1212 E-GRILMTLKESEVNG------------ELKI------------MKTFDDLQIGDIFEGT 1246

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLV 934
            V  + DFGV V  +   +V G   H +++   V+       +G  ++  IL +   +R +
Sbjct: 1247 VTSTTDFGVFVKLDGTVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQL 1306

Query: 935  DLSLKTVFI--DRFREANSNRQAQ 956
             L +K  +   D  +E N +   +
Sbjct: 1307 SLGMKASYFIADSGKEDNDDEDVE 1330


>gi|255724334|ref|XP_002547096.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134987|gb|EER34541.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1722

 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 209/840 (24%), Positives = 373/840 (44%), Gaps = 79/840 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVE---RGLHKKNKKKKKKTERKANETVDDLG 108
           FPRGG   L+  E  EI  E   D  FE  E   R    K+++ KKK  +++++     G
Sbjct: 16  FPRGGSKPLSALEVKEISNEAIKDVLFEQAETNKRSGSSKSEQPKKKQRKQSSKKKSTKG 75

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL-------A 161
               D    K          KNI  G  + G +  +N+ D+ + L   L G        A
Sbjct: 76  DQDVDDADDKKSVSIENFNFKNIGHGTLILGQIKAINKLDITLALGDNLVGYIPITSISA 135

Query: 162 RAADALDPI---------------------------LDNEIEANEDNLLPTIFHVGQLVS 194
           +    L+                                E E  E   L +IF +G  + 
Sbjct: 136 QITKLLEEFDHESSEEEDEEEEKEEDDDGETVATVKFKTEKEFPE---LSSIFKIGSWLK 192

Query: 195 CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
             V   ++D K   K++I L++    + + L  + +    +L   VKS+EDHG IL  G 
Sbjct: 193 AKVSSSNEDIKT--KKRIQLTVEPEFVNESLETDDLIINNILQCSVKSVEDHGIILDTGK 250

Query: 255 PSFTGFLPRNNLAE-NSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 312
             ++GF+    L+  N  +D +KPGL++   + S    R +    +   ++ K     + 
Sbjct: 251 SEYSGFISNKELSNANLEVDSIKPGLVILCAISSKVSGRTINLKPTSSVSIKKGAVTTIS 310

Query: 313 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
             SID +  G++V   +  I +NG++        GT+ +  + N F   + K+ Y     
Sbjct: 311 --SIDSIQAGVVVDALINEITDNGLITKVYGLVDGTIALSQIHN-FDIKDLKHKYAIGTN 367

Query: 373 VNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVRVDRGLG 424
           V AR+L V     ++ + L++ P++L      +  K      VG ++D+ KV+  D    
Sbjct: 368 VKARVLAVLSKNGTKKLILSILPHVLQLGNHSAEEKALEAFPVGHVFDKVKVIGNDTNYL 427

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 484
            +    ST +       I D       K    Y  GS  + R++GF  ++ L     ++ 
Sbjct: 428 YVEFGSSTMIGQVHNSKIDD------DKTLLDYTVGSTHKSRVVGFNAVDNLLILTFESK 481

Query: 485 AFEGLVFTHSDVKPGMVVKG-KVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGK 541
             E       D+  G ++   +++ V   GA   V+     K   P   MS+ ++V P +
Sbjct: 482 IIEAKYLKAQDIPIGTLLSNVEILKVLEGGAGINVKVFDDFKGFVPSNQMSDIKLVYPER 541

Query: 542 KFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHG 600
           KF+VG+++  R+L +K KRI +T +K+LV      ILS + +A     T+  + K   +G
Sbjct: 542 KFRVGSKVKGRLLDIKGKRIYITLRKSLVNLEDDEILSRFDQAEIGFKTNAIVEKFVPNG 601

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-- 658
           C V+F+  ++ F P++E+        S+   +GQ+VK R++       R+ ++       
Sbjct: 602 CIVKFFGNLRAFLPKTEISETFVDNASNYLKLGQIVKVRVLDINKDEERLIVTLKQSSEL 661

Query: 659 TRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 714
           +   ++++ KL    S+V+ V+   T ++++V  + +   +G +    L+D + E    +
Sbjct: 662 SNAQKNEISKLESGKSVVNAVIVEKTKDSILVE-LEESNLRGVVADGQLSDGNYEQNRSL 720

Query: 715 KSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSA--QQLPSDASHIHPNSVVHGYVC 770
              +K G +  ++L+LD +  +  ++ +AK SLI +A  +  P+D + I  N VV GY+ 
Sbjct: 721 AKKLKVGEKL-EVLILDKDLKARTVIATAKPSLIEAAKGKSFPTDFNDIQINKVVKGYIK 779

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           ++   G FV F GRLTG           + DL+K +Y  QSV   ++ ++ E  R  L+L
Sbjct: 780 SVTNLGLFVTFTGRLTGLVLAKYVTKNGKEDLTKKFYKYQSVTCRVISIDQENERFLLTL 839



 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 240/1046 (22%), Positives = 449/1046 (42%), Gaps = 149/1046 (14%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++ G+VV   +  +   G I +  G V     L  +  F+I     K+ +G  +  RVL 
Sbjct: 315  IQAGVVVDALINEITDNGLITKVYGLVDGTIALSQIHNFDIKDLKHKYAIGTNVKARVLA 374

Query: 556  VKSKRITVTHKKTLVKS------KLAILSSYAEATDRLITHGWITKIEKHG-----CFVR 604
            V SK  T    K L+ S      +L   S+  +A +         K++  G      +V 
Sbjct: 375  VLSKNGT----KKLILSILPHVLQLGNHSAEEKALEAFPVGHVFDKVKVIGNDTNYLYVE 430

Query: 605  FYNGVQ-GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTR 660
            F +    G    S++  D        Y VG   K R++        + L+F   +++   
Sbjct: 431  FGSSTMIGQVHNSKIDDDKTLLD---YTVGSTHKSRVVGFNAVDNLLILTFESKIIEAKY 487

Query: 661  VSEDDLVKLGSLVSGV--VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVM 714
            +   D + +G+L+S V  + V+   A +   +   + KG +P+  ++D    + E    +
Sbjct: 488  LKAQD-IPIGTLLSNVEILKVLEGGAGINVKVFDDF-KGFVPSNQMSDIKLVYPERKFRV 545

Query: 715  KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPS--DASHI--HPNSVVHGYV 769
             S +K         +LD +   + ++ + SL+N    ++ S  D + I    N++V  +V
Sbjct: 546  GSKVKGR-------LLDIKGKRIYITLRKSLVNLEDDEILSRFDQAEIGFKTNAIVEKFV 598

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             N    GC V+F G L  F P+++  +    + S    +GQ V+  +LD+N +  R+ ++
Sbjct: 599  PN----GCIVKFFGNLRAFLPKTEISETFVDNASNYLKLGQIVKVRVLDINKDEERLIVT 654

Query: 830  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
            LKQS    ++ S  Q++     +I+ L+S K            ++ +VI  K  +S    
Sbjct: 655  LKQS----SELSNAQKN-----EISKLESGKS-----------VVNAVIVEKTKDS---- 690

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV---DLSLKTVFIDRF 946
            ++V  EE S++ G +   QL+    E    +   +    K E L+   DL  +TV     
Sbjct: 691  ILVELEE-SNLRGVVADGQLSDGNYEQNRSLAKKLKVGEKLEVLILDKDLKARTVIA--- 746

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 1006
                S  +A K K       D+ +++ V   ++ V    L ++       +  A     N
Sbjct: 747  TAKPSLIEAAKGKSFPTDFNDIQINKVVKGYIKSVTNLGLFVTFTGRLTGLVLAKYVTKN 806

Query: 1007 TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA-------ISETETSSSKRAKKKS 1059
             ++   K+F   QSV   V+++   +   R LL L +         E      K  K  +
Sbjct: 807  GKEDLTKKFYKYQSVTCRVISIDQENE--RFLLTLGSGGANGNEDEELVNPVDKSKKIVA 864

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND---DKSNVVENLFSNFKIGQT 1116
             Y  G   +A I  IK  +L ++      GR+ IT+  +   D  N  + L +NF  G  
Sbjct: 865  DYTPGVSTKALIKAIKGTQLNVQLADNLQGRVDITQCFNSIKDIKNEQQPLAANFNKGDL 924

Query: 1117 VTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG-----------SKLLFEECDVSIGQ 1165
            +  ++I   +  +   +FL     K +  T+ E+            S+L  E  DV +G 
Sbjct: 925  LDVKVIGTHDAKN--HTFLPITHRKSNRTTILELSLNDHKVNNKPLSELKLE--DVKVGD 980

Query: 1166 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            ++ G+V  +      ++IS  LK ++  LD   + S  Q+   +  IG A+   V  ++ 
Sbjct: 981  KLLGFVNNIAKGLVWVSISPSLKGRVSFLDLTNDGSIFQDIDNKLPIGSAIKVTVKQVDL 1040

Query: 1226 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285
            E K L L  R       DK V+  +D     + +G+    R+ KI      ++V++GP +
Sbjct: 1041 EHKTLSLTTR-------DKFVEKFDD-----VVKGETYPARVLKIKPN--HVLVELGPDV 1086

Query: 1286 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1345
                    + +  ++D L  Y + + D +  Y++  +V  +VL+I    +    + +SLR
Sbjct: 1087 --------IASSFITDALENYSD-KLDHV--YEQNDYVSARVLDIDEDNK---RISVSLR 1132

Query: 1346 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1405
                            D +   K +  + DL    +++G++KN+ + G ++ L R + A 
Sbjct: 1133 D---------------DAEAADKVINSVSDLERGHVIKGFIKNIANNGVYVSLGRSIHAL 1177

Query: 1406 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1465
            V +S+LSD Y++  +K F   ++V G++++ +    RV +TLK S+        + +  +
Sbjct: 1178 VRVSDLSDSYLKDWKKFFKPNQMVIGKIVNCKE-EGRVLMTLKESEV-NGELKLMKSFDD 1235

Query: 1466 LHVGDIVIGQIKRVESYGLFITIENT 1491
            L VGDI  G +     +G+F+ ++ T
Sbjct: 1236 LSVGDIFEGTVTSTTDFGVFVKLDGT 1261



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 7/228 (3%)

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK--ASAFEGLVFTHSDVKPG 499
            I+D  E    KL+  Y++   V  R+L         +  L+  A A + ++ + SD++ G
Sbjct: 1092 ITDALENYSDKLDHVYEQNDYVSARVLDIDEDNKRISVSLRDDAEAADKVINSVSDLERG 1151

Query: 500  MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
             V+KG +  + + G  V     + AL  +  +S+  +    K FK    ++ +++  K +
Sbjct: 1152 HVIKGFIKNIANNGVYVSLGRSIHALVRVSDLSDSYLKDWKKFFKPNQMVIGKIVNCKEE 1211

Query: 560  -RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAPRS 616
             R+ +T K++ V  +L ++ S+ + +   I  G +T     G FV+      V G    S
Sbjct: 1212 GRVLMTLKESEVNGELKLMKSFDDLSVGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHS 1271

Query: 617  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
            E+  +       ++  G  VK +I+     S +  LS  MK +  +ED
Sbjct: 1272 EISENDVENVKMLFGDGDRVKVKILK--IDSEKKQLSLGMKASYFAED 1317



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 119/293 (40%), Gaps = 51/293 (17%)

Query: 664  DDLVKLGSLVSGVVDVVTPNAVVVY----VIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
            DD+VK G      V  + PN V+V     VIA  +   T   E+ +D L+H       + 
Sbjct: 1058 DDVVK-GETYPARVLKIKPNHVLVELGPDVIASSFI--TDALENYSDKLDHVYEQNDYVS 1114

Query: 720  PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
                  ++L +D ++  + +S +     +A ++ +  S +    V+ G++ NI   G +V
Sbjct: 1115 A-----RVLDIDEDNKRISVSLRDD-AEAADKVINSVSDLERGHVIKGFIKNIANNGVYV 1168

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                 +      S   D    D  K +   Q V   I++   E GR+ ++LK+S      
Sbjct: 1169 SLGRSIHALVRVSDLSDSYLKDWKKFFKPNQMVIGKIVNCKEE-GRVLMTLKESEV---- 1223

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF---IIGSVIEGKVHESNDFGVVVSFEE 896
                                  NG ELK ++ F    +G + EG V  + DFGV V  + 
Sbjct: 1224 ----------------------NG-ELKLMKSFDDLSVGDIFEGTVTSTTDFGVFVKLDG 1260

Query: 897  HSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVF 942
              +V G   H +++   VE+       G  ++  IL +   ++ + L +K  +
Sbjct: 1261 TVNVSGLCHHSEISENDVENVKMLFGDGDRVKVKILKIDSEKKQLSLGMKASY 1313



 Score = 44.7 bits (104), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 146/356 (41%), Gaps = 44/356 (12%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            L LE V+ G  L  +V +I   G +     PS  G +   +L  +  I  D+      G 
Sbjct: 971  LKLEDVKVGDKLLGFVNNIA-KGLVWVSISPSLKGRVSFLDLTNDGSIFQDIDNKLPIGS 1029

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             ++  V+ +D   K + L++    V K           D +V G     RV  I  N V+
Sbjct: 1030 AIKVTVKQVDLEHKTLSLTTRDKFVEK----------FDDVVKGETYPARVLKIKPNHVL 1079

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            +        +  I      + +    + Y Q+  V+AR+L +D  ++ + ++     L +
Sbjct: 1080 VELGPDVIASSFITDALENY-SDKLDHVYEQNDYVSARVLDIDEDNKRISVS-----LRD 1133

Query: 399  RAPPSHVKVGDIYDQSKVVRVDRG---LGLLLDIPSTPV------STPAYVTISDVAEEE 449
             A  +   +  + D      ++RG    G + +I +  V      S  A V +SD+++  
Sbjct: 1134 DAEAADKVINSVSD------LERGHVIKGFIKNIANNGVYVSLGRSIHALVRVSDLSDSY 1187

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKV 506
            ++  +K +K    V  +I+  +  EG     LK S   G   L+ +  D+  G + +G V
Sbjct: 1188 LKDWKKFFKPNQMVIGKIVNCKE-EGRVLMTLKESEVNGELKLMKSFDDLSVGDIFEGTV 1246

Query: 507  IAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
             +   FG  V+  G   V  LC    +SE ++      F  G  +  ++L + S++
Sbjct: 1247 TSTTDFGVFVKLDGTVNVSGLCHHSEISENDVENVKMLFGDGDRVKVKILKIDSEK 1302


>gi|320582873|gb|EFW97090.1| Part of small ribosomal subunit (SSU) processosome (contains U3
           snoRNA) [Ogataea parapolymorpha DL-1]
          Length = 1659

 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 219/847 (25%), Positives = 376/847 (44%), Gaps = 103/847 (12%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG  LT  E  E+  E  ++  A  +      K KK+K      E +         
Sbjct: 31  FPRGGGSVLTPLEIKEVANEAVSDALAEAKESKSSKKSKKQKVIEAPTEQI--------- 81

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI--- 170
           G+          +T K +  G  + G + +VN  ++V+ L   L G     +  DP+   
Sbjct: 82  GV--------EHVTFKTLLPGSMVLGQIKQVNRMEIVLSLTDNLMGFIPITNISDPLTSQ 133

Query: 171 -----------------------LDNEIEANEDNLLP---TIFHVGQLVSCIVLQLDDDK 204
                                  L N I +++    P   T F VGQ +  IV++    K
Sbjct: 134 LQEFDDEQEESDEEPAYGDEENTLTNGIISSKKKSFPQLVTRFQVGQWLRAIVMESTKSK 193

Query: 205 KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRN 264
           K    ++I LS+  S + + +  E +    ++ A VKS+EDHG +L  G     GF+ + 
Sbjct: 194 K----KRIELSIEPSKVNEPMETEDLVTNAIVQASVKSVEDHGLVLDVGKEKLGGFIAKK 249

Query: 265 NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMM 324
           ++   S +D+   +LL  + +   RT     + S  + +S   T      SID ++PGM 
Sbjct: 250 DV--QSLVDI-GSVLLVNIAKKDGRT----LICSPINKLSAVQTIS----SIDAILPGMG 298

Query: 325 VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDP 382
           V   V  + + GV+         ++ + HL   +  +  K+++    K+ +R++   V  
Sbjct: 299 VEALVTEVTKEGVICKLFGVGNASIPLSHL-GVYEYSELKHNFAVGSKLKSRVMVSHVRA 357

Query: 383 TSRAVGLTLNPYL-------LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
             +   L++ P++           +      +G I+D   +   D    + +D+ S    
Sbjct: 358 GDKRFLLSVLPHIKSLNANVFGETSALEAFPIGHIFDSVTIKGKDSSY-IYVDVGSDFAI 416

Query: 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
             A++T         + L+  +K GS  R R+LG+   + L    L     E       D
Sbjct: 417 GQAHIT----RVSSTKDLDMDFKIGSTHRARVLGYSATDNLYILTLDKQQIERKFLRVED 472

Query: 496 VKPGMVVKGKVIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +  G ++  +V +VD+  G +V+F    + + P  +MS+ +++ P +KFK+G+++  RVL
Sbjct: 473 IPAGELINCEVRSVDAEKGIVVKFEEDFEGIVPPAYMSDVKLIYPERKFKIGSKIKGRVL 532

Query: 555 GVKSK----RITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            V ++    RI VT KK+LV      ++SS  +      T   I K+   GC VRF+  V
Sbjct: 533 RVVNQSGKSRIYVTLKKSLVNIENEDVVSSIEDVEAGKKTFATIDKMLPTGCVVRFFGFV 592

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLV 667
           + F P SE+       P     +GQ VK R++S    + RI +S      RVSE   D+ 
Sbjct: 593 KAFLPNSEISETFVKRPEDHVKLGQTVKVRVVSVDKENNRIKVS-----CRVSEVLSDMQ 647

Query: 668 K--LGSLVSG--VVDVVT----PNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
           K  L S+V G  +VDV       ++ +V +   G  +G I   HL + + E +      +
Sbjct: 648 KKTLSSIVPGRSIVDVQVVEKEKDSAIVELTESGL-RGIIYAGHLGEGNYEQSRAQLKKL 706

Query: 719 KPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQ--LPSDASHIH-PNSVVHGYVCNIIE 774
           + G E   L++  +  S ++ LSAK SLI  AQQ  LP     I   + ++HG+V ++  
Sbjct: 707 QIGAELKTLVLEKDVRSRVVKLSAKQSLIKDAQQGKLPLQYRDIEVSDELLHGFVKSVTP 766

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            G FV F   LTG A    AV+    DL K ++  QSV  +++ V+    R  +S+K+  
Sbjct: 767 NGVFVSFGNGLTGLALPRHAVEKPVDDLQKAFFTNQSVTCHVIRVDDANKRFLVSMKKES 826

Query: 835 CSSTDAS 841
            ++++ +
Sbjct: 827 STTSEPA 833



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 244/1057 (23%), Positives = 442/1057 (41%), Gaps = 174/1057 (16%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV---- 553
            PGM V+  V  V   G I +  G   A  PL H+  +E  +    F VG++L  RV    
Sbjct: 295  PGMGVEALVTEVTKEGVICKLFGVGNASIPLSHLGVYEYSELKHNFAVGSKLKSRVMVSH 354

Query: 554  LGVKSKRITVT---HKKTL---VKSKLAILSSYAEATDRLITHGW--ITKIEKHGCFVRF 605
            +    KR  ++   H K+L   V  + + L ++       I H +  +T   K   ++  
Sbjct: 355  VRAGDKRFLLSVLPHIKSLNANVFGETSALEAFP------IGHIFDSVTIKGKDSSYIYV 408

Query: 606  YNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
              G      ++ +      +   M + +G   + R++     S   NL  +    +  E 
Sbjct: 409  DVGSDFAIGQAHITRVSSTKDLDMDFKIGSTHRARVLG---YSATDNLYILTLDKQQIER 465

Query: 665  DLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 715
              +++     G L++  V  V     +V    + + +G +P  +++D    + E    + 
Sbjct: 466  KFLRVEDIPAGELINCEVRSVDAEKGIVVKFEEDF-EGIVPPAYMSDVKLIYPERKFKIG 524

Query: 716  SVIKPGYEFDQLLVLDNES--SNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNI 772
            S IK      ++L + N+S  S + ++ K SL+N   + + S    +         +  +
Sbjct: 525  SKIKG-----RVLRVVNQSGKSRIYVTLKKSLVNIENEDVVSSIEDVEAGKKTFATIDKM 579

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            + TGC VRF G +  F P S+  +           +GQ+V+  ++ V+ E  RI    K 
Sbjct: 580  LPTGCVVRFFGFVKAFLPNSEISETFVKRPEDHVKLGQTVKVRVVSVDKENNRI----KV 635

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVV 891
            SC  S   S MQ+                     K +   + G S+++ +V E      +
Sbjct: 636  SCRVSEVLSDMQK---------------------KTLSSIVPGRSIVDVQVVEKEKDSAI 674

Query: 892  VSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTV 941
            V   E S + G I    L     E           G+ ++  +L+     R+V LS K  
Sbjct: 675  VELTE-SGLRGIIYAGHLGEGNYEQSRAQLKKLQIGAELKTLVLEKDVRSRVVKLSAKQS 733

Query: 942  FIDRFREANSNRQAQKKK-----RKREASKDLGVHQTVNAI----VEIVKENYLV-LSLP 991
             I         + AQ+ K     R  E S +L +H  V ++    V +   N L  L+LP
Sbjct: 734  LI---------KDAQQGKLPLQYRDIEVSDEL-LHGFVKSVTPNGVFVSFGNGLTGLALP 783

Query: 992  EYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET---- 1047
               H++    V D       QK F   QSV   V+ +  ++   R L+ +K  S T    
Sbjct: 784  --RHAV-EKPVDDL------QKAFFTNQSVTCHVIRVDDANK--RFLVSMKKESSTTSEP 832

Query: 1048 -ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--V 1104
             E     + K    + VG   +A++  IK  +L ++      GRI ++E+ DD S +  V
Sbjct: 833  AENPVDSKMKTLDDFTVGKNTKAKVKSIKQTQLNVQLADNLQGRIDVSELFDDVSEIKDV 892

Query: 1105 ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK---LLFEE--- 1158
            +   S F+ G+ +  +II      D +      +S K +  TV E+ +K   +L  +   
Sbjct: 893  KRPLSQFQAGEVLDVKIIGFH---DSRNHRFLPISHKRTNQTVLELSAKKSSILSHKPVV 949

Query: 1159 ----CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
                 D  +G   TGY+      +  +TIS +L+A++ ++D + + S+ +  ++ + +G 
Sbjct: 950  PASIGDFHLGDECTGYINNFARGFLWVTISPNLRARISLMDLSDDASKFENLEKEYPVGS 1009

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
             V   V  ++ E  +L L  R        K +    D     +  G ++  R+ K     
Sbjct: 1010 VVRAKVTDLDTEHNILSLSARS-------KAITSLED-----LEVGSVIPARVLKTRESY 1057

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
              +VV++G  + G + F       ++D L+ Y +   D  S  D        VLE+  + 
Sbjct: 1058 --VVVELGKQVSG-ISF-------ITDALNDYTDKLDDIFSTND---ICAATVLEVDHSN 1104

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
            +  +   +SLR+                 D   K +   EDLSP  +V+G+VKNV + G 
Sbjct: 1105 KKVY---VSLRTK----------------DVKDKRIASYEDLSPGTVVRGFVKNVANNGV 1145

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            ++ L R + A V +S+LSD Y++  ++ F + + V G++   E    ++ +TLK S+  +
Sbjct: 1146 YVALGRTVHALVRVSDLSDSYLKDWKQYFKVHQPVLGKITKSEG-ENQILMTLKQSEIDS 1204

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
             S S +     +   +I  G ++RV ++G+F+ ++ T
Sbjct: 1205 DS-SLLKRFDQIQKDEIYEGSVRRVTNFGVFVNLDGT 1240



 Score = 47.0 bits (110), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 41/322 (12%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
            Y VG VV+ ++         ++LS   K     ED  +++GS++   V + T  + VV  
Sbjct: 1005 YPVGSVVRAKVTDLDTEHNILSLSARSKAITSLED--LEVGSVIPARV-LKTRESYVVVE 1061

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSA 749
            + K  S  +  T+ L D+ +    + S      +     VL+ + SN  +       +  
Sbjct: 1062 LGKQVSGISFITDALNDYTDKLDDIFST----NDICAATVLEVDHSNKKVYVSLRTKDVK 1117

Query: 750  QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR-SKAVDGQRADLSKTYYV 808
             +  +    + P +VV G+V N+   G +V  LGR      R S   D    D  + + V
Sbjct: 1118 DKRIASYEDLSPGTVVRGFVKNVANNGVYVA-LGRTVHALVRVSDLSDSYLKDWKQYFKV 1176

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
             Q V   I     E  +I ++LKQS   S D+S ++       +   +Q  +        
Sbjct: 1177 HQPVLGKITKSEGEN-QILMTLKQSEIDS-DSSLLK-------RFDQIQKDE-------- 1219

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQ 921
                    + EG V    +FGV V+ +   +V G   H Q+A   V +       G  ++
Sbjct: 1220 --------IYEGSVRRVTNFGVFVNLDGTLNVSGLCHHSQIADNQVTNIESLFSEGDRVK 1271

Query: 922  AAILDVAKAERLVDLSLKTVFI 943
              ILDV   ++ + L +K  + 
Sbjct: 1272 VKILDVDHEKKQLSLGMKASYF 1293



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
            +    V  +D + K VY+S     V     KD +  S + L PG +V   V+++  NGV 
Sbjct: 1092 ICAATVLEVDHSNKKVYVSLRTKDV-----KDKRIASYEDLSPGTVVRGFVKNVANNGVY 1146

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            ++        V +  L +++   +WK  +  H+ V  +I   +  ++ + +TL    + +
Sbjct: 1147 VALGRTVHALVRVSDLSDSY-LKDWKQYFKVHQPVLGKITKSEGENQIL-MTLKQSEIDS 1204

Query: 399  RAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 454
             +        ++  +IY+ S  VR     G+ +++  T ++       S +A+ +V  +E
Sbjct: 1205 DSSLLKRFDQIQKDEIYEGS--VRRVTNFGVFVNLDGT-LNVSGLCHHSQIADNQVTNIE 1261

Query: 455  KKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
              + EG  V+V+IL   H +   +  +KAS F G
Sbjct: 1262 SLFSEGDRVKVKILDVDHEKKQLSLGMKASYFTG 1295


>gi|407923743|gb|EKG16808.1| hypothetical protein MPH_06011 [Macrophomina phaseolina MS6]
          Length = 1803

 Score =  193 bits (491), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 193/774 (24%), Positives = 343/774 (44%), Gaps = 68/774 (8%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEAN 178
           ++ K ++ G  + G V ++  +D+ + LP  L G         +  + ++ +LD + +++
Sbjct: 147 LSYKRLAPGSMILGQVTQITSRDIALALPNNLTGFVPLTAVSDQFTERIEALLDQDEKSD 206

Query: 179 --------EDNLLPTIFHVGQLVSCIVLQLDDDKK---EIGKRKIWLSLRLSLLYKGLSL 227
                   ED  L  IF +GQ +  +V    +D     +  K++I LS++       +S 
Sbjct: 207 AEDTSSEDEDIELKNIFKLGQYLRAVVTSTGEDSAKGAQKNKKRIELSVKPQDANNRISR 266

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID---VKPGLLLQG 282
             +    ++ A V S+EDHG ++  GL   S  GF+      E  GID   ++ G +   
Sbjct: 267 SDLVANTMVQASVVSVEDHGLVMDLGLADGSIKGFMSSK---EVGGIDHTKIEKGSVFLC 323

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLS 340
           +V  +    K+  LS+D   +      +   +  +ID+ VPG  V   V  +   G+  +
Sbjct: 324 MVTGLSSNGKIAKLSADFQKIGNVKKANYLTEAPTIDVFVPGTAVEFLVSEVTTTGLAGT 383

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP--TSRAVGLTLNPYLL-- 396
            +     T D+ H        +  N Y   +KV ARI+   P    R +G+++  ++L  
Sbjct: 384 IMGLIDATADVVHAGAGASQQDLTNKYKIGEKVKARIICTFPGDERRKLGVSVLDHVLSL 443

Query: 397 ------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
                   + P   + +  I +++KV +V+   GL +D+    V  P +  IS +++++V
Sbjct: 444 TERQSADAKGPLDVLPISSIVEEAKVTKVEPIRGLFMDVGVKRV--PGFAHISRLSDDKV 501

Query: 451 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV- 506
             L +    YK GS  R R++G+  ++G+    L+            DVK G VVKGKV 
Sbjct: 502 DSLSETTGAYKLGSTHRARVVGYNPVDGMYIVSLEKKVLNQPFLRIDDVKVGEVVKGKVE 561

Query: 507 ----IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR-- 560
                A  S   IV    G+  L    H+++  +  P KK+K G  +  RVL    +R  
Sbjct: 562 KVMITARGSGAVIVNLAEGISGLVSETHIADVHLQHPEKKYKEGLAVTARVLSTDPERRQ 621

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 620
           + +T KKTLV S   + ++Y++        G I K+   G  V+FY  ++GF P SE+  
Sbjct: 622 VRLTLKKTLVNSDAPVWANYSDVQIGEQAPGTIIKLLPAGAIVQFYGDLRGFLPVSEMSE 681

Query: 621 DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR-VSEDDL---VKLGSLVSGV 676
               +P+  + +GQ V    +S      ++ +S     +R  ++ D    +++ ++V GV
Sbjct: 682 AYIKDPAEHFRIGQTVTVHALSVNAEEDKMTVSCRDPASRNAAQQDTFGSLQVTTIVKGV 741

Query: 677 VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS 735
           V   +   V V +      KG +   HL D  E     K   I+ G   + L++L     
Sbjct: 742 VSEKSEKNVTVELEGSAI-KGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVILSKSDK 800

Query: 736 N--LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
              + LS K SL+ +AQ   LP+    +     V G+V NI +   FV F   L G   +
Sbjct: 801 RPVVTLSNKPSLVAAAQSGSLPAKFEDVKEGKPVTGFVRNIDDQRVFVEFADGLVGLLLK 860

Query: 792 SKAVDGQRADLSKTYYVG----QSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
           S+     + ++ KT   G     +V   IL V+    R  ++L+    +++D +
Sbjct: 861 SQ----MKEEMQKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRDDHQAASDKA 910



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 221/467 (47%), Gaps = 57/467 (12%)

Query: 1043 AISETETSS-SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            A +ET  +S  +  K  S +  G L  A IT +K  +L ++      GRI ++EV D   
Sbjct: 920  ATNETLVNSVDESCKSISDFTFGKLTTARITGVKETQLNVQLADNLFGRIDVSEVFDSWD 979

Query: 1102 NVVE--NLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFE 1157
            ++ +  +   NFK  Q +  RII      D +      +S + S + V E+ +K   L +
Sbjct: 980  HIKDRKHPLRNFKAKQNIPVRIIGIH---DARSHRFLPISHRTSKVPVFELTAKAVELSK 1036

Query: 1158 ECDV------SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
            E D+      ++G     +V  + +    + I+ +++ ++  +D A + S L +    F 
Sbjct: 1037 ESDLLSLEKLTVGSSHIAFVNNIGDNCVWVNITPNVRGRIDFMDLADDVSLLNDVPAHFP 1096

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISK 1269
            +G A+   V S+N     L L         SD TV  +     TF  +  G  + GR++K
Sbjct: 1097 VGSALKVRVKSVNVSANRLDLT------ATSDSTVKPT-----TFKDLAPGMTLPGRVTK 1145

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
            +      ++VQ+  ++   V  TE  +          D  + +P + Y++   V+  VLE
Sbjct: 1146 VSER--NIMVQLSDNVSAPVTLTEFTD----------DYTEANP-TIYNKNDIVRVSVLE 1192

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
            +    +    + L++R S           LS+ +      +  I  +  N +V+G++KNV
Sbjct: 1193 VDAPNK---KLHLTMRPS---------KVLSSSLPVKDPQVANIRQVKVNDVVRGFIKNV 1240

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            + KG F+ L   + A V +S+LSD Y++  +  F + +LV G+++ V+P    V+++LK 
Sbjct: 1241 SDKGLFVSLGPSVTAFVRVSDLSDSYIKDWKSAFEVDQLVKGKIIQVDPQLNHVQMSLKA 1300

Query: 1450 SDSRTASQSEINNLS--NLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            S      ++ +  L+  ++  G ++ G+I++VE +G+FI ++N+  V
Sbjct: 1301 S---MLDKNYVPPLTFDDMKAGMVITGKIRKVEEFGVFIVVDNSKNV 1344



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 41/332 (12%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            LSLE +  G    A+V +I D+   ++   P+  G +   +LA++  +  DV      G 
Sbjct: 1041 LSLEKLTVGSSHIAFVNNIGDNCVWVNI-TPNVRGRIDFMDLADDVSLLNDVPAHFPVGS 1099

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVT-KDLKGISIDLLVPGMMVSTRVQSILENGV 337
             L+  V+S++ +   + L++  D+  K  T KDL         PGM +  RV  + E  +
Sbjct: 1100 ALKVRVKSVNVSANRLDLTATSDSTVKPTTFKDL--------APGMTLPGRVTKVSERNI 1151

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LL 396
            M+      +  V +    + +   N    YN++  V   +L VD  ++ + LT+ P  +L
Sbjct: 1152 MVQLSDNVSAPVTLTEFTDDYTEAN-PTIYNKNDIVRVSVLEVDAPNKKLHLTMRPSKVL 1210

Query: 397  HNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEE 449
             +  P    +V +I  Q KV  V RG        GL +   S   S  A+V +SD+++  
Sbjct: 1211 SSSLPVKDPQVANIR-QVKVNDVVRGFIKNVSDKGLFV---SLGPSVTAFVRVSDLSDSY 1266

Query: 450  VRKLEKKYKEGSCVRVRILG----FRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKG 504
            ++  +  ++    V+ +I+       H++  L   +L  +    L F   D+K GMV+ G
Sbjct: 1267 IKDWKSAFEVDQLVKGKIIQVDPQLNHVQMSLKASMLDKNYVPPLTF--DDMKAGMVITG 1324

Query: 505  KVIAVDSFGA--IVQFPGGVKALCPLPHMSEF 534
            K+  V+ FG   +V     V  LC   H SE 
Sbjct: 1325 KIRKVEEFGVFIVVDNSKNVSGLC---HRSEI 1353



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 153/753 (20%), Positives = 311/753 (41%), Gaps = 127/753 (16%)

Query: 784  RLTGFAPRSKAVDGQRADLSKT---YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            R+ GFA  S+  D +   LS+T   Y +G + R+ ++  N   G   +SL++        
Sbjct: 486  RVPGFAHISRLSDDKVDSLSETTGAYKLGSTHRARVVGYNPVDGMYIVSLEKKV------ 539

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE-----SNDFGVVVSFE 895
              + + FL                    ++   +G V++GKV +          V+V+  
Sbjct: 540  --LNQPFLR-------------------IDDVKVGEVVKGKVEKVMITARGSGAVIVNLA 578

Query: 896  EHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
            E   + G ++   +A   ++        G  + A +L      R V L+LK   ++    
Sbjct: 579  EG--ISGLVSETHIADVHLQHPEKKYKEGLAVTARVLSTDPERRQVRLTLKKTLVNSDAP 636

Query: 949  ANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
              +N              D+ +  Q    I++++    +V     Y    G+  VS+ + 
Sbjct: 637  VWANYS------------DVQIGEQAPGTIIKLLPAGAIVQF---YGDLRGFLPVSEMSE 681

Query: 1008 Q--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS--SYDV 1063
               K P + F  GQ+V  TV AL  ++   ++      +S  + +S   A++ +  S  V
Sbjct: 682  AYIKDPAEHFRIGQTV--TVHALSVNAEEDKM-----TVSCRDPASRNAAQQDTFGSLQV 734

Query: 1064 GSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             ++V+  ++E     + ++  G    G + +  + D      E+     ++GQT+   +I
Sbjct: 735  TTIVKGVVSEKSEKNVTVELEGSAIKGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVI 794

Query: 1123 -AKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
             +KS+K       +  LS KPS++  ++ GS    FE  DV  G+ VTG+V  +D++   
Sbjct: 795  LSKSDK-----RPVVTLSNKPSLVAAAQSGSLPAKFE--DVKEGKPVTGFVRNIDDQRVF 847

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIG----KAVTGHVLSINKEKKLLRLVLRP 1236
            +  +  L     +L S  +    +E Q+    G      VTG +LS++  ++   + LR 
Sbjct: 848  VEFADGLVG--LLLKSQMK----EEMQKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRD 901

Query: 1237 FQDGISDKTVD-------ISNDNMQTFIHE-----GDIVGGRISKI-LSGV--GGLVVQI 1281
                 SDK           +N+ +   + E      D   G+++   ++GV    L VQ+
Sbjct: 902  DHQAASDKATSAKASKGPATNETLVNSVDESCKSISDFTFGKLTTARITGVKETQLNVQL 961

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYD--EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
              +L+GR+  +E+           +D  + +  PL  +   Q +  +++ I    R    
Sbjct: 962  ADNLFGRIDVSEV--------FDSWDHIKDRKHPLRNFKAKQNIPVRIIGI-HDARSHRF 1012

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + +S R+S   +    +  +    ++    LEK+   S ++    +V N+     ++ ++
Sbjct: 1013 LPISHRTSKVPVFELTAKAVELSKESDLLSLEKLTVGSSHI---AFVNNIGDNCVWVNIT 1069

Query: 1400 RKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
              +  ++   +L+D    +      FP+G  +  RV SV   + R+++T  TSDS     
Sbjct: 1070 PNVRGRIDFMDLADDVSLLNDVPAHFPVGSALKVRVKSVNVSANRLDLT-ATSDSTVKPT 1128

Query: 1458 SEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            +      +L  G  + G++ +V    + + + +
Sbjct: 1129 T----FKDLAPGMTLPGRVTKVSERNIMVQLSD 1157



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/439 (21%), Positives = 178/439 (40%), Gaps = 65/439 (14%)

Query: 539  PGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVK-----------SKLAILSSYAEA 583
            P + FK    +  R++G+   R    + ++H+ + V            SK + L S  + 
Sbjct: 987  PLRNFKAKQNIPVRIIGIHDARSHRFLPISHRTSKVPVFELTAKAVELSKESDLLSLEKL 1046

Query: 584  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIM 641
            T       ++  I  +  +V     V+G     +L  D     +  + + VG  +K R+ 
Sbjct: 1047 TVGSSHIAFVNNIGDNCVWVNITPNVRGRIDFMDLADDVSLLNDVPAHFPVGSALKVRVK 1106

Query: 642  SSIPASRRINLSFM----MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
            S   ++ R++L+      +KPT   +   +  G  + G V  V+   ++V  ++   S  
Sbjct: 1107 SVNVSANRLDLTATSDSTVKPTTFKD---LAPGMTLPGRVTKVSERNIMVQ-LSDNVSAP 1162

Query: 698  TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP---- 753
               TE   D+ E    + +  K       +L +D  +  L L+ + S + S+  LP    
Sbjct: 1163 VTLTEFTDDYTEANPTIYN--KNDIVRVSVLEVDAPNKKLHLTMRPSKVLSSS-LPVKDP 1219

Query: 754  --SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811
              ++   +  N VV G++ N+ + G FV     +T F   S   D    D    + V Q 
Sbjct: 1220 QVANIRQVKVNDVVRGFIKNVSDKGLFVSLGPSVTAFVRVSDLSDSYIKDWKSAFEVDQL 1279

Query: 812  VRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
            V+  I+ V+ +   + +SLK        AS + ++++       +++             
Sbjct: 1280 VKGKIIQVDPQLNHVQMSLK--------ASMLDKNYVPPLTFDDMKA------------- 1318

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAI 924
               G VI GK+ +  +FGV +  +   +V G     ++A   VE        G  ++A +
Sbjct: 1319 ---GMVITGKIRKVEEFGVFIVVDNSKNVSGLCHRSEIADQKVEDVTKLYSEGDAVKAVV 1375

Query: 925  LDVAKAERLVDLSLKTVFI 943
            L V K +R V+  LK  ++
Sbjct: 1376 LKVDKEKRKVNFGLKASYL 1394



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 39/240 (16%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            G++V G++ K++    G G ++V +   + G V  T + ++ +  P   Y EG       
Sbjct: 553  GEVVKGKVEKVMITARGSGAVIVNLAEGISGLVSETHIADVHLQHPEKKYKEGLA----- 607

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL---DGMSSTNSSDLSTDVDTPGKHLEKI 1373
                  V  +VL      R    V L+L+ +L   D     N SD+            +I
Sbjct: 608  ------VTARVLSTDPERR---QVRLTLKKTLVNSDAPVWANYSDV------------QI 646

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
             + +P  I++     +   G  +     L   + +S +S+ Y++ P + F IG+ V    
Sbjct: 647  GEQAPGTIIK-----LLPAGAIVQFYGDLRGFLPVSEMSEAYIKDPAEHFRIGQTVTVHA 701

Query: 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            LSV     ++ V+ +   SR A+Q +     +L V  IV G +       + + +E + +
Sbjct: 702  LSVNAEEDKMTVSCRDPASRNAAQQD--TFGSLQVTTIVKGVVSEKSEKNVTVELEGSAI 759



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 120/578 (20%), Positives = 242/578 (41%), Gaps = 58/578 (10%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             + P S++ G V  I      +     LTGF P + AV  Q  +  +   + Q  +S+  
Sbjct: 151  RLAPGSMILGQVTQITSRDIALALPNNLTGFVPLT-AVSDQFTERIEAL-LDQDEKSDAE 208

Query: 818  DVNSETGRITL-------SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            D +SE   I L          ++  +ST     +     +++I +    +   + +   +
Sbjct: 209  DTSSEDEDIELKNIFKLGQYLRAVVTSTGEDSAKGAQKNKKRIELSVKPQDANNRISRSD 268

Query: 871  GFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG---ATVESGSVIQAAILD 926
              +  ++++  V    D G+V+        + GF++  ++ G     +E GSV    +  
Sbjct: 269  -LVANTMVQASVVSVEDHGLVMDLGLADGSIKGFMSSKEVGGIDHTKIEKGSVFLCMVTG 327

Query: 927  VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT-VNAIVEIVKENY 985
            ++   ++  LS     I   ++AN   +A         + D+ V  T V  +V  V    
Sbjct: 328  LSSNGKIAKLSADFQKIGNVKKANYLTEA--------PTIDVFVPGTAVEFLVSEVTTTG 379

Query: 986  L---VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL--LLL 1040
            L   ++ L +    + +A      +Q+    ++  G+ V A ++         +L   +L
Sbjct: 380  LAGTIMGLIDATADVVHAGAG--ASQQDLTNKYKIGEKVKARIICTFPGDERRKLGVSVL 437

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQ-AEITEIKPLE-LRLKFGIG-FHGRIHITEVN 1097
               +S TE  S+          + S+V+ A++T+++P+  L +  G+    G  HI+ ++
Sbjct: 438  DHVLSLTERQSADAKGPLDVLPISSIVEEAKVTKVEPIRGLFMDVGVKRVPGFAHISRLS 497

Query: 1098 DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1157
            DDK + +      +K+G T  AR++  +    M     + +S++  +L      ++    
Sbjct: 498  DDKVDSLSETTGAYKLGSTHRARVVGYNPVDGM-----YIVSLEKKVL------NQPFLR 546

Query: 1158 ECDVSIGQRVTGYVYKV-----DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
              DV +G+ V G V KV      +   ++ ++  +     + ++      LQ  ++++  
Sbjct: 547  IDDVKVGEVVKGKVEKVMITARGSGAVIVNLAEGISG--LVSETHIADVHLQHPEKKYKE 604

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G AVT  VLS + E++ +RL L+      SD  V  +  ++Q     G+   G I K+L 
Sbjct: 605  GLAVTARVLSTDPERRQVRLTLKKTLVN-SDAPVWANYSDVQI----GEQAPGTIIKLLP 659

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
               G +VQ    L G +  +E+    + DP   +  GQ
Sbjct: 660  --AGAIVQFYGDLRGFLPVSEMSEAYIKDPAEHFRIGQ 695


>gi|449302185|gb|EMC98194.1| hypothetical protein BAUCODRAFT_32189 [Baudoinia compniacensis UAMH
            10762]
          Length = 1803

 Score =  193 bits (491), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 328/1420 (23%), Positives = 590/1420 (41%), Gaps = 178/1420 (12%)

Query: 54   FPRGGGHSLTQRERDEIHAEV------------------DAEFEAVERGLHKKNKKKKKK 95
            FPRGG   LT  E  +I A+                   DA+ E       ++  +KK+K
Sbjct: 59   FPRGGASVLTPIEHKQIKAQAERDVLFEQQTGQKAPGRDDADGELFGEEPTQEPVRKKRK 118

Query: 96   TERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPG 155
            T +++N T    G+  G  I G        ++ KN++ G ++ G V  +  +D+ + LP 
Sbjct: 119  T-KQSNSTAAPQGTGSGIRIQG--------LSYKNLAVGSQVLGYVTAITARDIALALPN 169

Query: 156  GLRGLARAADALDPILDNEIE-----------ANEDNLLPTIFHVGQLVSCIVLQLDDDK 204
             L G      A+  IL+  IE            +ED  L  +F+VGQ +   V  +  ++
Sbjct: 170  NLTGYV-PITAVSDILNARIERLLAEDERRADDDEDVDLKRLFYVGQWLRATVRSVGSEQ 228

Query: 205  K-EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT--GFL 261
                 KR I L++  S +  GL  ++V    +L A V+S+EDHG ++  GL   T  GF+
Sbjct: 229  AGSKSKRHIELAIAPSQVNGGLDGDSVVVNSMLQAAVRSVEDHGVVMDLGLGDETVKGFV 288

Query: 262  PRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK-CVTKDLKGIS---- 315
             + +L     +  ++ G ++  +V       KV+ LS D    S     K+   +S    
Sbjct: 289  SKKDLGAGFKLGQLQEGQVMMCLVTGKSSNGKVLKLSPDAARFSTHGAEKETPVVSEAPT 348

Query: 316  IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
            ++  +PG  VS  V      GV+   +     T D+ H        +    Y    K+  
Sbjct: 349  VEAFLPGTAVSILVTDSGAGGVVGKVMGMVDVTADVMHSGAATKGADMSKKYKIGSKIYG 408

Query: 376  RILFVDPTS---RAVGLTLNPYLLHNRAPPS-------------------HVKVGDIYDQ 413
            RI++  P +   R VG++L  ++L    P S                   H+ +  I   
Sbjct: 409  RIVWTLPNADDGRRVGVSLLDHMLCLPPPTSRLPEAASAKLRVQATQLEQHMPISAIIGD 468

Query: 414  SKVVRVDRGLGLLLDIPSTP-VSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILG 469
            +KVV +    G+ L++P+      PA+  IS V++  +  L      +K  S  + RI+ 
Sbjct: 469  AKVVHLLSERGIFLELPTVAGQPAPAFAHISQVSDTRIDVLSSSSGLFKVDSVHKARIIA 528

Query: 470  FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV------DSFGAIVQFPGGVK 523
            F  ++ L    LK S  +       D+K G VVKG V  +         G +V+    + 
Sbjct: 529  FNPIDNLYYVSLKQSVLDQAYLRLEDLKVGEVVKGTVERLILGGKTGITGVLVKLSATIT 588

Query: 524  ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYA 581
             L P  H S+ ++  P +KF+ G  +  RVL V  + + + +T KK+L+  ++ +   Y 
Sbjct: 589  GLVPETHFSDAQLQHPERKFREGFPVQARVLSVDLEKRHVRLTFKKSLIDREVEVWQDYN 648

Query: 582  EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                 +   G I  +   G  V+F+  V+ + P +E+           + +GQ V  RI+
Sbjct: 649  ILKPGMEGTGTIVNLLPSGAAVQFFGNVRAWLPVAEMSEGYIERVEQHFRLGQTVNVRIL 708

Query: 642  SSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
            S    ++ + +S     +    +    + V  G LVSG V V    +V V +  +    G
Sbjct: 709  SVNAETQEMKVSCKQSGLFDAEQQEAWEAVSGGQLVSGSVTVKGGESVTVEL--QNGLLG 766

Query: 698  TIPTEHLADHL-EHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQ--L 752
             I   HLAD     A    S I+ G     LLVL     S  +LLS K SL+ +A+   L
Sbjct: 767  LIRHGHLADGAPTKADSALSRIRVGQNLTDLLVLGKRERSRQVLLSNKPSLVKAAKAGTL 826

Query: 753  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
                + +   +V  G+V N+   G +V F   + G  P+S+    +    +      Q+V
Sbjct: 827  IRSFADVREGAVAQGFVRNVTPEGVYVDFTNGIVGLVPKSQVGTDKVGKPAFGLLKEQTV 886

Query: 813  RSNILDVNSETGRITLSLKQSCCSSTDASFMQE--HFLLEEKI--AMLQSSKHNGSELKW 868
             + +L++++   R TLS+++       A   Q   H + + +I   M+ S K     ++ 
Sbjct: 887  HTWVLNIDTARERFTLSMREQTDKPAVADRAQTAVHDVTKGQIVKVMIASIKATQLNVRL 946

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV- 927
              G      ++G++  S  F          D +  I++++      +    ++A +L + 
Sbjct: 947  ANG------VQGRIDVSEVF----------DSWDDISNNKAPLQKFKPNEELEAKVLGLH 990

Query: 928  -AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN-----AIVEIV 981
             A+  R + +S +      F  +     A++ +   ++ + LG+   V      A V   
Sbjct: 991  DARNHRFLPISHRQGKAPVFELS-----AKRSRINDQSEQLLGLDSIVPNASYLAFVNNH 1045

Query: 982  KENYLVLSL-PEYNHSIGYASVSDYN--TQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 1038
             +N + ++L P     I    +SD     QK  +K F  G ++  TV A+     +GRL 
Sbjct: 1046 GDNCVWVNLSPNVRGRIALMDLSDDAGMLQKV-EKSFPIGCALQVTVKAI--DLVSGRLD 1102

Query: 1039 LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
            L  +       S+ ++A        G ++   +T++    + ++      G + + E++D
Sbjct: 1103 LTAR------NSTEQKALTLQDISPGMVLPGRVTKVTERAITVQLSDTLAGPVPLVEMSD 1156

Query: 1099 DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK--LLF 1156
            +   +  N+    K    +    +   + P+ KK F   LS++PS +  S +  K   + 
Sbjct: 1157 NYEQL--NVLQYRK--NDIVRVCVLGIDTPN-KKLF---LSLRPSKVLSSSLPVKDPQIA 1208

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
                +  G  V G+V  V +   ++++S  L A  F+  S      +++++    I + V
Sbjct: 1209 SVSQLKPGDLVRGFVKHVGDRGVIVSLSPQLDA--FVRISDLSDQYVKDWKSLVEIDQLV 1266

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS-GVG 1275
             G V +++ E K ++L L+       D    IS +++      G IV G++ K+   G  
Sbjct: 1267 KGRVTAVDSETKNVQLSLKASHVD-EDYVPPISINDLAA----GTIVTGKVRKVEDFGAF 1321

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
              +    P L G  H +E+    V            D    Y  G  VK KVL +    R
Sbjct: 1322 IDIDNTQPRLSGLCHRSEVAAKRVE-----------DVRKLYSAGDVVKAKVLSVDLEAR 1370

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
                 ++SL     G+ ++  +D+  D + PG   + +ED
Sbjct: 1371 -----KISL-----GLKASYFADV--DANDPGVAADDVED 1398



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 220/911 (24%), Positives = 402/911 (44%), Gaps = 118/911 (12%)

Query: 616  SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSL 672
            S+  +D     S ++ V  V K RI++  P      +S    ++    +  +DL K+G +
Sbjct: 502  SDTRIDVLSSSSGLFKVDSVHKARIIAFNPIDNLYYVSLKQSVLDQAYLRLEDL-KVGEV 560

Query: 673  VSGVVD--VVTPNAVVVYVIAK--GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-Q 726
            V G V+  ++     +  V+ K      G +P  H +D  L+H    +   + G+    +
Sbjct: 561  VKGTVERLILGGKTGITGVLVKLSATITGLVPETHFSDAQLQHP---ERKFREGFPVQAR 617

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
            +L +D E  ++ L+ K SLI+   ++  D + + P     G + N++ +G  V+F G + 
Sbjct: 618  VLSVDLEKRHVRLTFKKSLIDREVEVWQDYNILKPGMEGTGTIVNLLPSGAAVQFFGNVR 677

Query: 787  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
             + P ++  +G    + + + +GQ+V   IL VN+ET  + +S KQS             
Sbjct: 678  AWLPVAEMSEGYIERVEQHFRLGQTVNVRILSVNAETQEMKVSCKQSGL----------- 726

Query: 847  FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
            F  E++ A             W E    G ++ G V      G  V+ E  + + G I H
Sbjct: 727  FDAEQQEA-------------W-EAVSGGQLVSGSVTVKG--GESVTVELQNGLLGLIRH 770

Query: 907  HQLA-GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
              LA GA  ++ S    A+  +   + L DL      +   RE +       K    +A+
Sbjct: 771  GHLADGAPTKADS----ALSRIRVGQNLTDL-----LVLGKRERSRQVLLSNKPSLVKAA 821

Query: 966  KDLGVHQTVNAIVE-IVKENYLVLSLPE------YNHSIGYASVSDYNTQKFPQKQF--L 1016
            K   + ++   + E  V + ++    PE       N  +G    S   T K  +  F  L
Sbjct: 822  KAGTLIRSFADVREGAVAQGFVRNVTPEGVYVDFTNGIVGLVPKSQVGTDKVGKPAFGLL 881

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV--GSLVQAEITEI 1074
              Q+V   V+ + ++    R    L    +T+  +     + + +DV  G +V+  I  I
Sbjct: 882  KEQTVHTWVLNIDTA----RERFTLSMREQTDKPAVADRAQTAVHDVTKGQIVKVMIASI 937

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK- 1131
            K  +L ++   G  GRI ++EV D   ++  N      FK  + + A+++   +  + + 
Sbjct: 938  KATQLNVRLANGVQGRIDVSEVFDSWDDISNNKAPLQKFKPNEELEAKVLGLHDARNHRF 997

Query: 1132 --------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
                    K+ ++ELS K S   +++   +LL  +  V     +  +V    +    + +
Sbjct: 998  LPISHRQGKAPVFELSAKRSR--INDQSEQLLGLDSIVPNASYLA-FVNNHGDNCVWVNL 1054

Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
            S +++ ++ ++D + +   LQ+ ++ F IG A+   V +I+     L L  R   +    
Sbjct: 1055 SPNVRGRIALMDLSDDAGMLQKVEKSFPIGCALQVTVKAIDLVSGRLDLTAR---NSTEQ 1111

Query: 1244 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
            K + + +      I  G ++ GR++K+      + VQ+   L G V   E+ +       
Sbjct: 1112 KALTLQD------ISPGMVLPGRVTKVTER--AITVQLSDTLAGPVPLVEMSD------- 1156

Query: 1304 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1363
              Y+  Q + L  Y +   V+  VL I    +  F   LSLR S           LS+ +
Sbjct: 1157 -NYE--QLNVLQ-YRKNDIVRVCVLGIDTPNKKLF---LSLRPS---------KVLSSSL 1200

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
                  +  +  L P  +V+G+VK+V  +G  + LS +LDA V +S+LSD YV+  +   
Sbjct: 1201 PVKDPQIASVSQLKPGDLVRGFVKHVGDRGVIVSLSPQLDAFVRISDLSDQYVKDWKSLV 1260

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVES 1481
             I +LV GRV +V+  +K V+++LK S  D        IN+L+    G IV G++++VE 
Sbjct: 1261 EIDQLVKGRVTAVDSETKNVQLSLKASHVDEDYVPPISINDLA---AGTIVTGKVRKVED 1317

Query: 1482 YGLFITIENTN 1492
            +G FI I+NT 
Sbjct: 1318 FGAFIDIDNTQ 1328



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 106/476 (22%), Positives = 189/476 (39%), Gaps = 104/476 (21%)

Query: 1092 HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG 1151
            HI++V+D + +V+ +    FK+     ARIIA  N  D     L+ +S+K S+L      
Sbjct: 497  HISQVSDTRIDVLSSSSGLFKVDSVHKARIIA-FNPIDN----LYYVSLKQSVL------ 545

Query: 1152 SKLLFEECDVSIGQRVTGYVYK--VDNEWALLTISRHLKAQL--FILDSAYEPSELQEFQ 1207
             +      D+ +G+ V G V +  +  +  +  +   L A +   + ++ +  ++LQ  +
Sbjct: 546  DQAYLRLEDLKVGEVVKGTVERLILGGKTGITGVLVKLSATITGLVPETHFSDAQLQHPE 605

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND-NMQTFIHEGDIVGGR 1266
            R+F  G  V   VLS++ EK+ +RL    F+  + D+ V++  D N+     EG    G 
Sbjct: 606  RKFREGFPVQARVLSVDLEKRHVRLT---FKKSLIDREVEVWQDYNILKPGMEGT---GT 659

Query: 1267 ISKILSGVGGL-----------VVQIGPHLYGRV--HF--------------TELKNICV 1299
            I  +L     +           V ++      RV  HF               E + + V
Sbjct: 660  IVNLLPSGAAVQFFGNVRAWLPVAEMSEGYIERVEQHFRLGQTVNVRILSVNAETQEMKV 719

Query: 1300 SDPLSG-YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL---------- 1348
            S   SG +D  Q +       GQ V   V     TV+G   V + L++ L          
Sbjct: 720  SCKQSGLFDAEQQEAWEAVSGGQLVSGSV-----TVKGGESVTVELQNGLLGLIRHGHLA 774

Query: 1349 DGMSSTNSSDLS--------TDVDTPGKH-----------------------LEKIEDLS 1377
            DG  +   S LS        TD+   GK                        +    D+ 
Sbjct: 775  DGAPTKADSALSRIRVGQNLTDLLVLGKRERSRQVLLSNKPSLVKAAKAGTLIRSFADVR 834

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
               + QG+V+NVT +G ++  +  +   V  S +    V  P       + V   VL+++
Sbjct: 835  EGAVAQGFVRNVTPEGVYVDFTNGIVGLVPKSQVGTDKVGKPAFGLLKEQTVHTWVLNID 894

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
               +R  ++++    + A    + + +   V D+  GQI +V    +  +I+ T L
Sbjct: 895  TARERFTLSMREQTDKPA----VADRAQTAVHDVTKGQIVKV----MIASIKATQL 942


>gi|241950924|ref|XP_002418184.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
 gi|223641523|emb|CAX43484.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
          Length = 1715

 Score =  193 bits (491), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 210/849 (24%), Positives = 373/849 (43%), Gaps = 82/849 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG   L+  E  EI  E   D  FE  E      + K ++  ++    + +   +  
Sbjct: 16  FPRGGSKPLSALEVKEISNEATKDVLFEQAESNKRSNSSKSEQPKKKHKKSSKNKSKNDK 75

Query: 112 GDGISGKLPR-YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL---------- 160
            D                KN+ +G  + G +  +N+ D+ + L   L G           
Sbjct: 76  NDNDEETTQSVLIETFNFKNLVSGSSVLGQIKTINKLDIGLALGDNLTGYIPITSISPQI 135

Query: 161 ------------------ARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDD 202
                             +  AD          ++  +   P +  + +L S +  ++  
Sbjct: 136 TALIEKFEEQEQEEEEEESDNADGNQETKSATFKSKTEKEFPDLLKIFKLGSWLKAKITT 195

Query: 203 DKKEI-GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL 261
             ++   K++I L++    + + L ++ +    +L   VKSIEDHG IL  G P ++GF+
Sbjct: 196 SNEDFKNKKRIELTIEPESVNESLEVDDLIVNNILQCSVKSIEDHGIILDTGKPEYSGFI 255

Query: 262 PRNNLAENSGIDVK---PGLLLQGVV------RSIDRTRKVVYLSSDPDTVSKCVTKDLK 312
               L  N+ IDV    PGL++   +      R+I+    V  +S+   TVS        
Sbjct: 256 SNKELT-NAKIDVTTIVPGLVILCSIATKPSSRTINLKPIVATISAKKSTVSTIS----- 309

Query: 313 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
             SID + PG++V   +  + ENG++        GT+ +  +QN F     K+ Y     
Sbjct: 310 --SIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FDLKELKHKYAIGST 366

Query: 373 VNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVRVDRGLG 424
           V AR+L V     ++ + L++ P++L      S  +      +G ++D+ KV+  D+   
Sbjct: 367 VKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTQALEAFPIGHVFDEVKVIGNDKHY- 425

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 484
               +  +  S+  +  I     ++ + L   Y  GS  + R++GF  ++ L     ++ 
Sbjct: 426 ----VYVSFGSSSLFGQIHQSKFDDNKTL-LDYSIGSTHKSRVIGFNEVDNLLILSFESK 480

Query: 485 AFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
             +       DV  G ++   +++ V  D  G  V+F    K   P   MS+ ++V P +
Sbjct: 481 VIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPGNQMSDIKLVYPER 540

Query: 542 KFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHG 600
           KF+VG +   R+L    KR  +T +K LV      ILS+  +A     T+  + K   +G
Sbjct: 541 KFRVGTKTKGRLLNYNGKRALITFRKALVNLEDDEILSNIDQAEIGFKTNAIVEKFVPNG 600

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
           C V F+  ++ F P++E+      + SS   VGQ+VK RI+      +R+ ++ + + + 
Sbjct: 601 CIVSFFGNLRAFLPKTEISETFVEDASSYLKVGQIVKVRILDINKEQKRLVVT-LKQSSE 659

Query: 661 VSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATV 713
           +S     ++  LVSG  +V  V    T ++V+V  +   + +G I    L+D + E    
Sbjct: 660 LSNAQKNEINKLVSGKSIVKTVIVEKTKDSVLVE-LEGSHLRGVIYDGQLSDGNYEQNRA 718

Query: 714 MKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYV 769
           +   +  G    ++L+LD +  +  ++ +AK SLI +  ++  P D + +  N+VV GYV
Sbjct: 719 LAKRLTIGESL-EVLILDKDLKARTVIATAKKSLIEALKSKSFPVDFNDVTVNAVVKGYV 777

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            ++   G FV F GRLTG           + DLSK +Y  QS+   +L V+ E  R  L+
Sbjct: 778 KSVTSLGLFVTFTGRLTGLILAKYVTKNAKEDLSKKFYKYQSINCRVLSVDKENERFLLA 837

Query: 830 LKQSCCSST 838
           L  S  S T
Sbjct: 838 LNNSSSSFT 846



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 244/1062 (22%), Positives = 444/1062 (41%), Gaps = 180/1062 (16%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PG++V   +  V   G + +  G V     L  +  F++ +   K+ +G+ +  RVL 
Sbjct: 314  IQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQNFDLKELKHKYAIGSTVKARVLA 373

Query: 556  VKSKRITVTHKKTLVKS------KLAILSSYAEATDRL-ITHGW----ITKIEKHGCFVR 604
            V  K  T    K L+ S      +L   SS  +A +   I H +    +   +KH  +V 
Sbjct: 374  VLLKNGT----KKLILSILPHVLQLGDDSSQTQALEAFPIGHVFDEVKVIGNDKHYVYVS 429

Query: 605  F-YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
            F  + + G   +S+   +        Y +G   K R++        + LSF  K      
Sbjct: 430  FGSSSLFGQIHQSKFDDNKTLLD---YSIGSTHKSRVIGFNEVDNLLILSFESKVIDAEY 486

Query: 664  DDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYS---------KGTIPTEHLADHLEHAT 712
             ++  V +G L+        PN  ++ V+  G           KG +P   ++D      
Sbjct: 487  LNVRDVPIGKLL--------PNVEILKVLEDGVGINVKFFDEFKGFVPGNQMSDI----- 533

Query: 713  VMKSVIKPGYEF-----DQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASH----IHPN 762
                ++ P  +F      +  +L+      L++ + +L+N    ++ S+          N
Sbjct: 534  ---KLVYPERKFRVGTKTKGRLLNYNGKRALITFRKALVNLEDDEILSNIDQAEIGFKTN 590

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            ++V  +V N    GC V F G L  F P+++  +    D S    VGQ V+  ILD+N E
Sbjct: 591  AIVEKFVPN----GCIVSFFGNLRAFLPKTEISETFVEDASSYLKVGQIVKVRILDINKE 646

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              R+ ++LKQS    ++ S  Q++     +I  L S K            I+ +VI  K 
Sbjct: 647  QKRLVVTLKQS----SELSNAQKN-----EINKLVSGKS-----------IVKTVIVEKT 686

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL-VDLSLKTV 941
             +S    V+V  E  S + G I   QL+    E            A A+RL +  SL+ +
Sbjct: 687  KDS----VLVELE-GSHLRGVIYDGQLSDGNYEQNR---------ALAKRLTIGESLEVL 732

Query: 942  FIDRFREANSNRQAQKKKRKREASK---------DLGVHQTVNAIVEIVKENYLVLSLPE 992
             +D+  +A +   A  KK   EA K         D+ V+  V   V+ V    L ++   
Sbjct: 733  ILDKDLKART-VIATAKKSLIEALKSKSFPVDFNDVTVNAVVKGYVKSVTSLGLFVTFTG 791

Query: 993  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
                +  A     N ++   K+F   QS+   V+++   +   R LL L   S + T   
Sbjct: 792  RLTGLILAKYVTKNAKEDLSKKFYKYQSINCRVLSVDKENE--RFLLALNNSSSSFTKDD 849

Query: 1053 KRAKKK--------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND---DKS 1101
            ++  K         + Y  G   +A I  +K  +L ++      GR+ IT+  +   D  
Sbjct: 850  EQLIKPIDTTKKIVADYQPGETTKAVIRAVKGTQLNVQLADNLQGRVDITQCFNSIKDIK 909

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPD----------MKKSFLWELSIKPSMLTVSEIG 1151
            N+ + L S F+ G+TV  ++I   +  +            ++ + ELS     LT  +I 
Sbjct: 910  NLHQPLASRFQKGETVDVKVIGVHDAKNHTFLPITHRKSNRTTILELS-----LTNPQIN 964

Query: 1152 SKLL--FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1209
            +K L   +  D   G  +  +V  + N    ++IS  +K ++ +LD   + S  Q+   +
Sbjct: 965  NKPLTDLKLKDFKQGDELLAFVNNIINGMVWVSISPSIKGRISMLDLTEDGSIFQDIDNK 1024

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
              IG A+   V  ++ + ++L L  R   +   +K  D+  D         +I   RI K
Sbjct: 1025 LPIGNAINVKVKQVDLQHQILVLTAR---ENFIEKFEDVKQD---------EIYPARIIK 1072

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
            I      ++V++G ++      T        D L  Y E + D +  ++   +V  KVL+
Sbjct: 1073 IKPN--HVLVELGNNVIASSFLT--------DALDDYSE-KLDHV--FNVNDYVSAKVLD 1119

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
            I                  D ++   S  L T+  T  K +  + DL+   +++G+VKN+
Sbjct: 1120 I------------------DSINKRISVSLRTNKPTSDKVINSVGDLTRGQVIKGFVKNI 1161

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            ++ G ++ L R + A V +S+LSD Y++  +  F   + V G++++ +    R+ +TLK 
Sbjct: 1162 SNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQ-EGRILMTLKE 1220

Query: 1450 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            S+        +    +L +GDI  G +     +G+F+ ++ T
Sbjct: 1221 SEV-NGDLKIMKTFDDLQIGDIFEGTVTSTTEFGVFVKLDGT 1261



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 32/186 (17%)

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            V+ G+V NI   G +V     +      S   D    D    +   Q V   I++   E 
Sbjct: 1153 VIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQE- 1211

Query: 824  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
            GRI ++LK+S  +  D   M                       K  +   IG + EG V 
Sbjct: 1212 GRILMTLKESEVNG-DLKIM-----------------------KTFDDLQIGDIFEGTVT 1247

Query: 884  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDL 936
             + +FGV V  +   +V G   H +++   V+       +G  ++  IL +   +R + L
Sbjct: 1248 STTEFGVFVKLDGTVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDPVKRQLSL 1307

Query: 937  SLKTVF 942
             +K  +
Sbjct: 1308 GMKASY 1313


>gi|408391805|gb|EKJ71173.1| hypothetical protein FPSE_08679 [Fusarium pseudograminearum CS3096]
          Length = 1784

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 211/806 (26%), Positives = 349/806 (43%), Gaps = 79/806 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
           +D P+FPRGG   LT  E+ +I+ E  A+    E        +KKKK +         + 
Sbjct: 60  EDEPMFPRGGASILTPLEQKKINIEAKADAMRDEEFNTATKDQKKKKRKTALKGGDKKVD 119

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAAD 165
              GD    +       ++ KN+  G  +   V  +N  D+ + LP  L G   +   + 
Sbjct: 120 KKTGDE---EQAIRVESLSFKNLVKGSLVLAQVTRINNLDVEVALPNNLTGHISIVAVSQ 176

Query: 166 ALDPILDNEIEANEDNL-----------LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIW 213
            L   L+NE    +D+            L +IF VGQ L + +V  +++     GKR+I 
Sbjct: 177 QLTERLENETADKDDDEEEEAEDDEGIDLKSIFAVGQYLRAYVVSTVEESTTGKGKRRIE 236

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
           LSLR S    GL  + V     + A V S++D G+++  G+ +   FL R+ +  +  ID
Sbjct: 237 LSLRPSEANTGLEKDDVVPNATVMASVASVQDRGFVMDTGIENLGAFLSRSEV--DKTID 294

Query: 274 VK---PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQ 330
            K   PG +    V S     K+  LS     +           +I   +PG M    V 
Sbjct: 295 EKRLQPGAVFLCQVISKGANGKIAQLSLQQKKIGNPKNLPTDATTIKTFLPGTMTDVLVS 354

Query: 331 SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VG 388
           +    G+    + +   T DI H        +    Y    +  AR++   P +R   +G
Sbjct: 355 NTDRRGLAGKIMGHLDVTADIIHSGVGPAGVSLDTAYKIGSRAKARVICNFPGAREPKLG 414

Query: 389 LTLNPYLL------------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
           ++L P++               + P   + +  + +   V  V+  +GL +DI    +S 
Sbjct: 415 ISLLPHITTLEKKRSTKSADSKKNPTQVLPISSLVETCTVRHVEADIGLFVDIGIPGLS- 473

Query: 437 PAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
             +V IS V + +V  L +    YK GS  + R++G+  ++GL     + S  E      
Sbjct: 474 -GFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVGYNEIDGLFQISFEKSVLEQEYLRL 532

Query: 494 SDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
            DV  G VV  ++  + VD  G    IV+   G+    P  H+S+  +  P KKF+ G +
Sbjct: 533 EDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHPEKKFRQGMK 592

Query: 549 LVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +  RVL   +  K++ +T KKT+V S+  ++ SY E T  +   G I K+   G  ++F+
Sbjct: 593 VKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLSSGAIIQFF 652

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTR 660
             VQGF P SE+      +P   + +GQVV   ++   P  +R+ +S      F ++   
Sbjct: 653 GTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPSAFGLEKQN 712

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
             +   ++LG +VS  V   T + V V  +A    K TI   HL D        KS  K 
Sbjct: 713 ALKK--LQLGDVVSAKVTQKTEDQVFVE-LADSQLKATISVGHLTD--------KSNSKN 761

Query: 721 GYEFDQLLV-----------LDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHG 767
            Y F ++ V            D+    ++LS K SL+++++   L +         +V G
Sbjct: 762 QYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEMAKEGKIVAG 821

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSK 793
           +V NI  T  FV+F G LT   P+++
Sbjct: 822 FVRNITVTAVFVQFAGNLTALLPKAR 847



 Score =  143 bits (360), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 201/885 (22%), Positives = 391/885 (44%), Gaps = 161/885 (18%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V LG++V+  ++  VV    V  ++  +A+G S G +P +HL+D  L+H         P 
Sbjct: 535  VPLGAVVTCEIEKVVVDERGVSGLIVKVAEGIS-GFVPEQHLSDVRLQH---------PE 584

Query: 722  YEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
             +F Q       +L  + +   + L+ K +++NS   +      +     + G +  ++ 
Sbjct: 585  KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 644

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            +G  ++F G + GF P S+  +    D  + + +GQ V  ++LDV  E  R+ +S K   
Sbjct: 645  SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 704

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
                        F LE++ A+              +   +G V+  KV +  +  V V  
Sbjct: 705  A-----------FGLEKQNAL--------------KKLQLGDVVSAKVTQKTEDQVFVEL 739

Query: 895  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
             + S +   I+   L   T +S S  Q A   +A  + L DL    V I    E + NR+
Sbjct: 740  AD-SQLKATISVGHL---TDKSNSKNQYAFKRIAVGQTLSDL----VII----EKDDNRR 787

Query: 955  A---QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS---------------------L 990
                  K    +ASK    ++T+    E+ KE  +V                       L
Sbjct: 788  VIVLSHKPSLLDASK----NRTLLTSFEMAKEGKIVAGFVRNITVTAVFVQFAGNLTALL 843

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSV-IATVMALPSSSTAGRLLLLLKAISET-E 1048
            P+           D+   K         QS+ +  V  +P      R+++      E+ E
Sbjct: 844  PKARLPADVQDQPDFGMHKH--------QSIEVKIVSVIPDHQ---RIVVAPADFDESAE 892

Query: 1049 TSSSKRAKKKSS----YDVGSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNV 1103
             +   +A  K +     ++G++  A+IT +K  +L ++       GRI +++V D   ++
Sbjct: 893  LAKKGKASDKPAATDDIELGTITNAKITSVKDTQLNVQLANSKVQGRIDVSQVFDKWEDI 952

Query: 1104 VE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSK 1153
            ++  +    +   Q ++ R++    AK +K  P   +S   + EL+ KPS +    +   
Sbjct: 953  LDPKDPLDKYNKKQNISVRVMGVHSAKDHKFLPFSHRSLHSVLELTAKPSDIEAKTL-KP 1011

Query: 1154 LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG 1213
            L  E  DV +G     +V     +   + +S  ++ ++  ++++ + S+L + +  F IG
Sbjct: 1012 LSLE--DVKVGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQLNDLEANFPIG 1069

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
             A+   V +++     L L         S ++ + S+    + + +  ++ GR++K+   
Sbjct: 1070 SALKVRVTAVDVRNNRLDL---------SARSSNSSDAVTWSVLKQNMVLPGRVTKV--N 1118

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQFVKCKVLEIS 1331
               ++V++   + G VH  ++ +              FD ++  ++  G  V+  V+E+ 
Sbjct: 1119 ERQVLVKLSEAVSGPVHLPDMTD-------------DFDTINTLNQRKGDIVRVSVVELD 1165

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1391
             + +    + LS R S   MSST        +    K +  +  L    IV+G+VKNV+ 
Sbjct: 1166 SSNK---RLRLSTRPSR-IMSST--------LPVKDKEISDVSQLDAGDIVRGFVKNVSD 1213

Query: 1392 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS- 1450
            KG F++L  ++ A V +SNLSD Y++  +  F + +LV GRV++V+ L++ VE++LK+S 
Sbjct: 1214 KGLFVLLGGQVTALVKISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSV 1273

Query: 1451 -DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
             D      +  N++     G +V G++++VE +G FI I+ ++ V
Sbjct: 1274 VDEDYTPPTTYNDIQE---GQVVTGKVRKVEEFGAFILIDGSDNV 1315



 Score = 66.6 bits (161), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 161/395 (40%), Gaps = 57/395 (14%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG    A +    P  L +       GRI+  E +DD S +  +L +NF IG  +  R+ 
Sbjct: 1019 VGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQL-NDLEANFPIGSALKVRVT 1077

Query: 1123 A---KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
            A   ++N+ D+        S     +T S +   ++             G V KV+    
Sbjct: 1078 AVDVRNNRLDLSA----RSSNSSDAVTWSVLKQNMVL-----------PGRVTKVNERQV 1122

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
            L+ +S  +   + + D   +   +    +R   G  V   V+ ++   K LRL  RP + 
Sbjct: 1123 LVKLSEAVSGPVHLPDMTDDFDTINTLNQRK--GDIVRVSVVELDSSNKRLRLSTRPSR- 1179

Query: 1240 GISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
             I   T+ + +  +   + +  GDIV G +  +     GL V +G  +   V  + L + 
Sbjct: 1180 -IMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDK--GLFVLLGGQVTALVKISNLSDR 1236

Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
             + +     D  Q D        Q VK +V+ + +  R   HVE+SL+SS+         
Sbjct: 1237 YIKE---WKDHFQVD--------QLVKGRVVAVDKLTR---HVEMSLKSSV--------- 1273

Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGY 1415
             +  D   P  +     D+    +V G V+ V   G FI++  S  +      S +++  
Sbjct: 1274 -VDEDYTPPTTY----NDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQA 1328

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            V+   K +  G  V  RVLSV+   +RV   LK S
Sbjct: 1329 VKDATKLYKEGDAVKARVLSVDAEKRRVAFGLKPS 1363



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 159/364 (43%), Gaps = 46/364 (12%)

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGI 272
            K LSLE V+ G    A+V +       ++   PS  G +            N+L  N  I
Sbjct: 1010 KPLSLEDVKVGDTHVAFVNNSSPQHLWVNLS-PSVRGRINAMEASDDLSQLNDLEANFPI 1068

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
                G  L+  V ++D     + LS+     S  VT  +  +  ++++PG     RV  +
Sbjct: 1069 ----GSALKVRVTAVDVRNNRLDLSARSSNSSDAVTWSV--LKQNMVLPG-----RVTKV 1117

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLT 390
             E  V++      +G V +  + + F T N     NQ K   V   ++ +D +++ + L+
Sbjct: 1118 NERQVLVKLSEAVSGPVHLPDMTDDFDTIN---TLNQRKGDIVRVSVVELDSSNKRLRLS 1174

Query: 391  LNP-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 441
              P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V 
Sbjct: 1175 TRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVK 1229

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKP 498
            IS++++  +++ +  ++    V+ R++    L       LK+S  +       T++D++ 
Sbjct: 1230 ISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE 1289

Query: 499  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            G VV GKV  V+ FGA +   G   V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1290 GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSV 1349

Query: 557  KSKR 560
             +++
Sbjct: 1350 DAEK 1353



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 38/223 (17%)

Query: 730  LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            LD+ +  L LS + S I S+  LP      SD S +    +V G+V N+ + G FV   G
Sbjct: 1164 LDSSNKRLRLSTRPSRIMSST-LPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGG 1222

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            ++T     S   D    +    + V Q V+  ++ V+  T  + +SLK        +S +
Sbjct: 1223 QVTALVKISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLK--------SSVV 1274

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
             E +        +Q                 G V+ GKV +  +FG  +  +   +V G 
Sbjct: 1275 DEDYTPPTTYNDIQE----------------GQVVTGKVRKVEEFGAFILIDGSDNVSGL 1318

Query: 904  ITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLK 939
                Q+A   V       + G  ++A +L V   +R V   LK
Sbjct: 1319 CHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRVAFGLK 1361



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 6/170 (3%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +  G +V+G V  V   G  V   G V AL  + ++S+  I +    F+V   +  RV
Sbjct: 1196 SQLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNLSDRYIKEWKDHFQVDQLVKGRV 1255

Query: 554  LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGV 609
            + V   ++ + ++ K ++V       ++Y +  +  +  G + K+E+ G F+     + V
Sbjct: 1256 VAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDNV 1315

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
             G   RS++      + + +Y  G  VK R++S     RR+  +F +KP+
Sbjct: 1316 SGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRV--AFGLKPS 1363



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 37/294 (12%)

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKP 1128
            +T++   ++ +K      G +H+ ++ DD  + +  L  N + G  V   ++    SNK 
Sbjct: 1114 VTKVNERQVLVKLSEAVSGPVHLPDMTDD-FDTINTL--NQRKGDIVRVSVVELDSSNK- 1169

Query: 1129 DMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1186
                     LS +PS +  S   +  K + +   +  G  V G+V  V ++   + +   
Sbjct: 1170 ------RLRLSTRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQ 1223

Query: 1187 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            + A + I  S      ++E++  F + + V G V++++K   L R V    +  + D+  
Sbjct: 1224 VTALVKI--SNLSDRYIKEWKDHFQVDQLVKGRVVAVDK---LTRHVEMSLKSSVVDE-- 1276

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D +       I EG +V G++ K+      +++    ++ G  H +++    V       
Sbjct: 1277 DYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVK------ 1330

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL--DGMSSTNSSD 1358
                 D    Y EG  VK +VL +    R    V   L+ SL  D  S  ++SD
Sbjct: 1331 -----DATKLYKEGDAVKARVLSVDAEKR---RVAFGLKPSLFEDVDSDMDNSD 1376



 Score = 40.8 bits (94), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 37/236 (15%)

Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
            G  G +HI+ V D K   +      +K G     R++   N+ D     L+++S + S+L
Sbjct: 471  GLSGFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVG-YNEIDG----LFQISFEKSVL 525

Query: 1146 TVS-------EIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
                       +G+ +  E   V + +R V+G + KV    +     +HL          
Sbjct: 526  EQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHL---------- 575

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
                 LQ  +++F  G  V   VLS N +KK +RL L+        KT+  S   +    
Sbjct: 576  -SDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLK--------KTIVNSEAPVVKSY 626

Query: 1258 HE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
             E   G  + G I K+LS   G ++Q    + G +  +E+    + DP   +  GQ
Sbjct: 627  DEVTVGMQIPGTIIKVLS--SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQ 680


>gi|149247299|ref|XP_001528062.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448016|gb|EDK42404.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1863

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 219/865 (25%), Positives = 373/865 (43%), Gaps = 99/865 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG  +LT  E  EI  E   D  FE V   L+KK  K        + +         
Sbjct: 148 FPRGGSTALTPMEVKEISNEATRDVLFE-VANNLNKKRSKPDANLSTVSRKKQKKNSKKG 206

Query: 112 GDGI--------SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---L 160
                       S +       +T KN+  G  ++G +  VN+ DLV+ L   L G   +
Sbjct: 207 SKNGDDDNDDVESDEKKTAVEYLTFKNLLPGSLVFGQIQYVNKLDLVLALENNLVGYVPI 266

Query: 161 ARAADALDPILD--------------------------------NEIEANEDNLLP---T 185
              + A+   +D                                    A E  L P   +
Sbjct: 267 TSISTAITNAIDKFEEESEEEESEDEEDEEKEDDEKNDKSKIHATTFSAKEKKLFPDLKS 326

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
           +F VG  +   V++ D+ +K   KR+I LSL   L+   +  E +  G V+   VKS+ED
Sbjct: 327 MFQVGSWLKAKVVESDNSQK---KRRIELSLEPKLVNANIEDEDLIPGNVILCAVKSVED 383

Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTR----KVVYLSS 298
           HG IL  G   F+ F+    L +N+G++   ++ GL+L  V+ S    R    K V L++
Sbjct: 384 HGVILDTGFEKFSAFMSNKEL-KNAGLEPASLQEGLVLSCVLVSQPSGRIITVKPVSLAA 442

Query: 299 --DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
              P  VS          S+D + PG++V+  V  I   G++        GT+ I  +QN
Sbjct: 443 GKKPAVVSTIT-------SVDSIQPGILVNALVSDITSEGIITRVFGLVDGTISIAQIQN 495

Query: 357 TFPTTNWKNDYNQHKKVNARILFV---DPTSRAV------GLTLNPYLLHNRAPPSHVKV 407
            F T + K+ Y     +  RIL +   + T + +       ++L+ +   N+       +
Sbjct: 496 -FNTADLKHKYAIGSTIKTRILAILEKEGTKKLLLSMLPTTMSLDNHQKQNQEALEAYPI 554

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
           G I+D+ +V+ +D+   + ++  S   S    +  S++  +   K    Y  GS  + R+
Sbjct: 555 GFIFDEVEVLGLDKSY-VYVNFGSK--SLFGQIHNSNLGGD---KSLLNYSVGSKHKARV 608

Query: 468 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKA 524
           LGF  ++ L                  D+  G  +   +V+ V  D+ G  V+       
Sbjct: 609 LGFNTVDNLLVLTFDDKIINAEYLNVRDIPLGAFLPNCEVVKVLPDNGGLSVKINDEFMG 668

Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEA 583
           L P   MS+ ++V P +KF+ G+++  R+L  + K   +T +K LV      I+  + +A
Sbjct: 669 LVPFNQMSDIKLVYPERKFRAGSKVKGRLLTHRGKTPLITLRKALVNLEDDEIILQFEDA 728

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
                T+  + K    G  V F+  ++ F P++E+      + S    +GQ+VK +I+  
Sbjct: 729 KVGFKTNATVEKFIHGGAIVSFFGSLRAFLPKTEISETFVDDASKFLKLGQIVKVKILDI 788

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-----VVDVVTPNAVVVYVIAKGYSKGT 698
               +R+ ++ M + + +S+    ++  L+SG      + V   N  V+  +     +G 
Sbjct: 789 KEDQKRVVVT-MKQSSELSDAQKTEISQLLSGRSIINAIVVEKKNNAVLIELEGSNLRGV 847

Query: 699 IPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LPS 754
           I    L+D + E    M   ++   +   L++  D ++  ++ +AK S+I +A++  LP 
Sbjct: 848 INDGQLSDGNYEQNRAMFKKLEISSKIRALVLEKDLKARTIIATAKKSMIEAAEKNALPI 907

Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
           D   I PN VV GYV ++   G FV F GRLTG      A      DLSK ++  QS+  
Sbjct: 908 DFDDIQPNKVVKGYVKSVTNLGLFVSFTGRLTGLVLAKYATANANEDLSKKFHKYQSLTC 967

Query: 815 NILDVNSETGRITLSLKQSCCSSTD 839
            +L V++E  R  L+L  S   S D
Sbjct: 968 RVLSVDTENKRFLLALLNSTNDSGD 992



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 250/1094 (22%), Positives = 456/1094 (41%), Gaps = 169/1094 (15%)

Query: 461  SCVRV-----RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
            SCV V     RI+  + +  LA G  K  A    + +   ++PG++V   V  + S G I
Sbjct: 421  SCVLVSQPSGRIITVKPV-SLAAG--KKPAVVSTITSVDSIQPGILVNALVSDITSEGII 477

Query: 516  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA 575
             +  G V     +  +  F       K+ +G+ +  R+L +  K  T     +++ + ++
Sbjct: 478  TRVFGLVDGTISIAQIQNFNTADLKHKYAIGSTIKTRILAILEKEGTKKLLLSMLPTTMS 537

Query: 576  ILSSYAEATDRLITH--GWITK------IEKHGCFVRF-YNGVQGFAPRSELGLDPGCEP 626
            + +   +  + L  +  G+I        ++K   +V F    + G    S LG D     
Sbjct: 538  LDNHQKQNQEALEAYPIGFIFDEVEVLGLDKSYVYVNFGSKSLFGQIHNSNLGGDKSLLN 597

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVSG--VVDVVTP 682
               Y VG   K R++        + L+F  K       ++  + LG+ +    VV V+  
Sbjct: 598  ---YSVGSKHKARVLGFNTVDNLLVLTFDDKIINAEYLNVRDIPLGAFLPNCEVVKVLPD 654

Query: 683  NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-----QLLVLDNESSNL 737
            N  +   I   +  G +P   ++D          ++ P  +F      +  +L +     
Sbjct: 655  NGGLSVKINDEF-MGLVPFNQMSDI--------KLVYPERKFRAGSKVKGRLLTHRGKTP 705

Query: 738  LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN-----IIETGCFVRFLGRLTGFAPRS 792
            L++ + +L+N    L  D   +       G+  N      I  G  V F G L  F P++
Sbjct: 706  LITLRKALVN----LEDDEIILQFEDAKVGFKTNATVEKFIHGGAIVSFFGSLRAFLPKT 761

Query: 793  KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
            +  +    D SK   +GQ V+  ILD+  +  R+ +++KQS    +DA         + +
Sbjct: 762  EISETFVDDASKFLKLGQIVKVKILDIKEDQKRVVVTMKQSS-ELSDAQ--------KTE 812

Query: 853  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 912
            I+ L S +               S+I   V E  +  V++  E  S++ G I   QL+  
Sbjct: 813  ISQLLSGR---------------SIINAIVVEKKNNAVLIELE-GSNLRGVINDGQLSDG 856

Query: 913  TVESGSVIQAAILDVAKAERLV---DLSLKTVFIDRFREANSNRQAQKKKRKREASK--- 966
              E    +   +   +K   LV   DL  +T+             A  KK   EA++   
Sbjct: 857  NYEQNRAMFKKLEISSKIRALVLEKDLKARTII------------ATAKKSMIEAAEKNA 904

Query: 967  ------DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 1020
                  D+  ++ V   V+ V    L +S       +  A  +  N  +   K+F   QS
Sbjct: 905  LPIDFDDIQPNKVVKGYVKSVTNLGLFVSFTGRLTGLVLAKYATANANEDLSKKFHKYQS 964

Query: 1021 VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK----KKS---SYDVGSLVQAEITE 1073
            +   V+++ + +    LL LL + +++     K       KKS    Y  G   +A +  
Sbjct: 965  LTCRVLSVDTENKR-FLLALLNSTNDSGDEDDKVVNPVDTKKSVVADYSPGVHTKAVVKS 1023

Query: 1074 IKPLELRLKFGIGFHGRIHITE----VNDDKSNVVENLFSNFKIGQTVTARIIAK----- 1124
            IK  +L ++      GR+ IT+    +ND K+  V    S F  G  V  ++I       
Sbjct: 1024 IKGTQLNVQLADNLQGRVDITQCFKSINDIKN--VRQPLSGFSKGDVVDVKVIGVHDARN 1081

Query: 1125 ------SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
                  +N+   K++ L ELSI    L    + S  L    D+++ Q +  +V  +D  +
Sbjct: 1082 HTFLPITNRKAGKQTIL-ELSIVDRELNGKNLSSLKL---DDITLEQELLCFVNNIDRGF 1137

Query: 1179 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
              ++IS  ++ ++  +D   + S  Q F+ ++ IG A+   V +I++E K L L+ R   
Sbjct: 1138 VWVSISPSVRGRISFMDLTNDGSVFQGFENKYPIGTAIQAKVKNIDQEHKSLSLISR--- 1194

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
            D    K  D+           G     RI K+      ++V +G  +        + +  
Sbjct: 1195 DNHVSKVEDV---------QIGQTYPARIVKVKDSY--VLVDLGDKV--------IASSF 1235

Query: 1299 VSDPLSGYDEGQFDPLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
            ++D L+ Y     D L+  +   ++V  KVL+I   V     + + LR+     SS  +S
Sbjct: 1236 ITDALNDYS----DKLAHVFHLNEYVAAKVLDID--VENN-KIAVMLRNE---ESSAAAS 1285

Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1417
            D         K +  ++DLS   +V+G+VKN+ S G ++ L R + A V +S+LSD Y++
Sbjct: 1286 D---------KTINSVDDLSRGQVVKGFVKNIASNGVYVSLGRCVHALVRVSDLSDSYLK 1336

Query: 1418 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1477
              +K F   + V G++++ +   K V +TLK S+        + N  +L VG++  G + 
Sbjct: 1337 DWKKFFKPAQSVIGKIINCKEQGK-VLMTLKESEV-NGDLKILKNYDDLVVGEVFEGTVT 1394

Query: 1478 RVESYGLFITIENT 1491
            +V  +G+F+ ++ T
Sbjct: 1395 KVTDFGVFVKLDGT 1408



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 53/358 (14%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI-----DVKP-GL 278
            L L+ +     L  +V +I D G++     PS  G +   +L  +  +     +  P G 
Sbjct: 1115 LKLDDITLEQELLCFVNNI-DRGFVWVSISPSVRGRISFMDLTNDGSVFQGFENKYPIGT 1173

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL----E 334
             +Q  V++ID+  K + L S  + VSK     ++ + I    P  +V  +   +L    +
Sbjct: 1174 AIQAKVKNIDQEHKSLSLISRDNHVSK-----VEDVQIGQTYPARIVKVKDSYVLVDLGD 1228

Query: 335  NGVMLSFLT-----YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 389
              +  SF+T     Y      +FHL          N+Y     V A++L +D  +  + +
Sbjct: 1229 KVIASSFITDALNDYSDKLAHVFHL----------NEY-----VAAKVLDIDVENNKIAV 1273

Query: 390  TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP------AYVTIS 443
             L        A    +   D   + +VV+     G + +I S  V         A V +S
Sbjct: 1274 MLRNEESSAAASDKTINSVDDLSRGQVVK-----GFVKNIASNGVYVSLGRCVHALVRVS 1328

Query: 444  DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGM 500
            D+++  ++  +K +K    V  +I+  +  +G     LK S   G   ++  + D+  G 
Sbjct: 1329 DLSDSYLKDWKKFFKPAQSVIGKIINCKE-QGKVLMTLKESEVNGDLKILKNYDDLVVGE 1387

Query: 501  VVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            V +G V  V  FG  V+  G   +  LC    +SE ++      F  G  +  ++L V
Sbjct: 1388 VFEGTVTKVTDFGVFVKLDGTINISGLCHHSEISENDVSNIASLFGEGDRVKVKILKV 1445



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 57/332 (17%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV-- 687
            Y +G  ++ ++  +I    + +LS + +   VS+ + V++G      +  V  + V+V  
Sbjct: 1169 YPIGTAIQAKV-KNIDQEHK-SLSLISRDNHVSKVEDVQIGQTYPARIVKVKDSYVLVDL 1226

Query: 688  --YVIAKGYSKGTIPTEHLADHLEHA-----TVMKSVIKPGYEFDQLLV-LDNESSNLLL 739
               VIA  +   T      +D L H       V   V+    E +++ V L NE S+   
Sbjct: 1227 GDKVIASSFI--TDALNDYSDKLAHVFHLNEYVAAKVLDIDVENNKIAVMLRNEESSAAA 1284

Query: 740  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR-SKAVDGQ 798
            S K   INS   L           VV G+V NI   G +V  LGR      R S   D  
Sbjct: 1285 SDK--TINSVDDLSR-------GQVVKGFVKNIASNGVYVS-LGRCVHALVRVSDLSDSY 1334

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 858
              D  K +   QSV   I++   E G++ ++LK+S  +             + KI     
Sbjct: 1335 LKDWKKFFKPAQSVIGKIINC-KEQGKVLMTLKESEVNG------------DLKI----- 1376

Query: 859  SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-- 916
                   LK  +  ++G V EG V +  DFGV V  +   ++ G   H +++   V +  
Sbjct: 1377 -------LKNYDDLVVGEVFEGTVTKVTDFGVFVKLDGTINISGLCHHSEISENDVSNIA 1429

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFI 943
                 G  ++  IL V   ++ + L +K  + 
Sbjct: 1430 SLFGEGDRVKVKILKVDLGKKQLSLGMKASYF 1461


>gi|170085507|ref|XP_001873977.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651529|gb|EDR15769.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1468

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 200/761 (26%), Positives = 330/761 (43%), Gaps = 110/761 (14%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           M A  R  + +S+K+G K  K + ++ +         + A++L          FPRGGG 
Sbjct: 1   MPAQKRSMENESTKNGSKKLKIADSKHERHTPSSGAPLRAEELD---------FPRGGGT 51

Query: 61  SLTQRERDEIHAEVDAE-----FE-------AVERGLHKKNKKKKKKTERKANETVDDLG 108
           S T  E   I AE   E     FE       A +  + KK+KK+K+              
Sbjct: 52  SFTPLEVKTIRAEAVKEANVELFEVRISFSYAKDTHVAKKSKKRKRGP------------ 99

Query: 109 SLFGDGISGKLPRYANKITL-----KNISAGMKLWGVVAEV----------NEKDLVICL 153
               DG +      AN++ +     K ++ GMK++G +  +          N+    + +
Sbjct: 100 ----DGHTHPAGENANRVRIEHLNYKRLNVGMKIFGQIVGILPLSLLVSLPNQLSAHVPI 155

Query: 154 PGGLRGLARAADALDPILDNEIEANEDNL---------LPTIFHVGQLVSCIV------- 197
                    A + +D I +     +E+           L  IF VGQ V  +V       
Sbjct: 156 TNISSQFTSALERMDNISEGSGADDEEGAGLSDSDTPDLSDIFRVGQYVRAVVSAIHAPG 215

Query: 198 ------LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
                 L    D+     R++ LSL    +  G+    ++ G  +TA VKS+EDHGYIL 
Sbjct: 216 SSEASSLGKSRDETSKASRRVELSLVPERVNAGVQKADLKNGFTMTAAVKSVEDHGYILD 275

Query: 252 FGLPSFTGFLPRNN--LAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 309
            G+    GFL   +  +  +  I +  G LL   V  +    +   +++D    S     
Sbjct: 276 LGISGVEGFLAFKDTKMRPSGSIALDVGRLLDVSVTKLSANGRTCNVTTDQALFSSSYVT 335

Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
           ++   S+  ++PG +V + + +I   G+ L  L +F GTVD  HL+           Y  
Sbjct: 336 EMS--SVTSVLPGALVQSLITAIHPTGLNLQVLGFFEGTVDPVHLKKGGKA------YQV 387

Query: 370 HKKVNARILFVDPTSRA-VGLTLNPYLLHNRAP-------PSHVK-------VGDIYDQS 414
            KKV ARIL+   +S     L L  +L +  AP       P+  K       +G I + +
Sbjct: 388 GKKVRARILYEYSSSPPRFALALVDHLTNLSAPCIKSKELPAETKSIQEAFPLGTIIESA 447

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRH 472
           KV+RV+   G+++++         +V IS ++E+ V  L     +K G+  R R+ G+  
Sbjct: 448 KVLRVETERGIIVEVQP---GVEGFVHISHLSEDHVPSLSSTGPWKPGTLHRARVTGYFS 504

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
            +GL     K S  E      SDV+ G V+KG +  +   G  V     +  +    H +
Sbjct: 505 FDGLLQLSFKPSIIEQKFLQVSDVEVGEVIKGTIKKLTDSGLFVSLSRSIDGVVWPNHYA 564

Query: 533 EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           +  +  P K+FK GA +  +VL V    KRI++T KKTL+ S L ILS   +A    +TH
Sbjct: 565 DITLKHPEKRFKPGAGIKCKVLAVDVYRKRISLTAKKTLLDSNLPILSKIDDAKPGFVTH 624

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
             I K+  +   V FYN ++   P  E+   P  + S  + +G+VV+ RI+S      RI
Sbjct: 625 AVIFKVYGNHLLVEFYNNLKAIVPAKEISDIPINKLSDSFPIGRVVRTRIISVDTEQGRI 684

Query: 651 NLSF---MMKPTRVSEDDLVKLGSLVSG-VVDVVTPNAVVV 687
             S    +     VS+   V++G++V G + ++   NA+++
Sbjct: 685 VASIRQALGNKDPVSDISAVEIGNIVKGSISEIHKDNALII 725



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 180/757 (23%), Positives = 319/757 (42%), Gaps = 103/757 (13%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            S  + + P ++V   +  I  TG  ++ LG   G         G +A     Y VG+ VR
Sbjct: 338  SSVTSVLPGALVQSLITAIHPTGLNLQVLGFFEGTVDPVHLKKGGKA-----YQVGKKVR 392

Query: 814  SNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV-EG 871
            + IL + +S   R  L+L     + +               A    SK   +E K + E 
Sbjct: 393  ARILYEYSSSPPRFALALVDHLTNLS---------------APCIKSKELPAETKSIQEA 437

Query: 872  FIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES---------GSVI 920
            F +G++IE    +    + G++V  E    V GF+    L+   V S         G++ 
Sbjct: 438  FPLGTIIESAKVLRVETERGIIV--EVQPGVEGFVHISHLSEDHVPSLSSTGPWKPGTLH 495

Query: 921  QAAILDVAKAERLVDLSLKTVFID-RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
            +A +      + L+ LS K   I+ +F + +                D+ V + +   ++
Sbjct: 496  RARVTGYFSFDGLLQLSFKPSIIEQKFLQVS----------------DVEVGEVIKGTIK 539

Query: 980  IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL 1039
             + ++ L +SL      + + +     T K P+K+F  G  +   V+A+       R  +
Sbjct: 540  KLTDSGLFVSLSRSIDGVVWPNHYADITLKHPEKRFKPGAGIKCKVLAV----DVYRKRI 595

Query: 1040 LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 1099
             L A      S+     K      G +  A I ++    L ++F       +   E++D 
Sbjct: 596  SLTAKKTLLDSNLPILSKIDDAKPGFVTHAVIFKVYGNHLLVEFYNNLKAIVPAKEISDI 655

Query: 1100 KSNVVENLFSNFKIGQTVTARIIA-KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1158
              N    L  +F IG+ V  RII+  + +  +  S    L  K     VS+I +      
Sbjct: 656  PIN---KLSDSFPIGRVVRTRIISVDTEQGRIVASIRQALGNKDP---VSDISA------ 703

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA-YEPSELQEFQRRFHIGKAV 1216
              V IG  V G + ++  + AL+ +    ++A L + + A +    L E   +  +G  +
Sbjct: 704  --VEIGNIVKGSISEIHKDNALIILQPTQIRALLSLKNLANFRQISLGELLVKLKVGDEL 761

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               V+      K + +V    +     K   +S D+++     G IVGGR+++       
Sbjct: 762  DELVVVTRNPDKGVVIVANTPKKVPLLKGSSVSIDSLKV----GQIVGGRVTRHTRHSA- 816

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
             ++++ P + G +H T++ +         YD G   P         ++  ++EI R+   
Sbjct: 817  -LIKVTPQIGGTLHPTDISD--------DYDMGLVLP----PVDSILRAAIIEIDRSKN- 862

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
               + LS R S     ST        VD    H   I D+     V+G +K+V   G F+
Sbjct: 863  --QLRLSTRHSKMYPESTKKI-----VDQEIIH---IFDIHVGDTVRGSIKSVADHGLFV 912

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
             + R +DA+V +  L D +VE  +  F   ++V G +LSV+  +++VE+TLK+ D  T +
Sbjct: 913  TIGRDIDARVQIRELFDDFVEDWKARFQEKQIVKGLILSVDLQTRKVEMTLKSGDLSTRN 972

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             S +  L++L VG  V G +KR+E YGLFI I+ + L
Sbjct: 973  GSSV-GLADLKVGQKVDGLVKRIEDYGLFINIDRSKL 1008


>gi|354546265|emb|CCE42995.1| hypothetical protein CPAR2_206380 [Candida parapsilosis]
          Length = 1728

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 213/854 (24%), Positives = 371/854 (43%), Gaps = 91/854 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKK-----NKKKKKKTERKANETVDD 106
           FPRGG   LT  E  EI  E   D  FE   +    K     +K +KK+   K      +
Sbjct: 16  FPRGGATGLTPLEVKEISNEATKDVLFEVANQNKRAKSGSEADKPRKKQRTNKKKGPSSE 75

Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
           +     D    +       ++ KN+  G  ++G +  VN+ D+ + L   L G       
Sbjct: 76  VSKTGDDAEEDEKKVQIEYLSFKNLVPGSFVFGQIQAVNKLDMALALENNLVGFV----- 130

Query: 167 LDPILDNEIEANEDNL-------------------------------------LPTIFHV 189
             PI  N I A+   L                                     L +IF V
Sbjct: 131 --PI--NAISAHITGLIKKYEEESEYEGDDDDDDEEGEGGTLMSTKPEKEFPDLKSIFRV 186

Query: 190 GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
           G  +   V++ +       K++I +S+   L    L  E +  G +++  VKSIEDHG I
Sbjct: 187 GSWLKAKVVETESS----NKKRIEVSIEPELANANLEKEDLVPGNIVSCSVKSIEDHGLI 242

Query: 250 LHFGLPSFTGFLPRNNLAENSGIDV---KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
           L  G+  F+ F+    L +N+ ID+   K GL+L   + S    R +    +   T +K 
Sbjct: 243 LDCGIEGFSAFVSNKEL-KNAEIDLETCKEGLVLTTTIVSKPSGRVITVKPAIASTTAKK 301

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
           +T      S+D +  G +V   V  + + G+M        GT++   LQ  F T   K+ 
Sbjct: 302 LTPITTISSVDAIQVGSVVEALVSDVTDAGIMTRVYGLVDGTLNFSDLQ-IFSTQELKHK 360

Query: 367 YNQHKKVNARILFVDPTS--RAVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVR 418
           +     +  R++ +      R + L+L  + L      S  +      VG ++D ++V+ 
Sbjct: 361 FAIGSNIKTRVVAILQKGGVRKLVLSLVSHSLQMGNESSKTEALEAFPVGHVFDDAEVLG 420

Query: 419 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
            D+   + + + S   ST   +  S++ E    K    Y   S  + R++GF  ++ L  
Sbjct: 421 SDQEY-VYVKLGS---STLGQIHNSNIDES---KTLIDYSVTSKHKARVIGFNMIDNLYV 473

Query: 479 GILKASAFEGLVFTHSDVKP-GMVVKGKVIAV--DSFGAIVQFPGGVKALCPLPHMSEFE 535
              K +  + L  T  D+    ++   ++I V  DS G  V+F    +   P  HMS+ +
Sbjct: 474 LTFKPTVIDALYLTVKDIPVVTLLPSCEIIKVLPDSGGIQVKFLEEFQGFVPPNHMSDIK 533

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWIT 594
           +V P +KF+VG+++  R+L  K K   VT +K+LV      ILSS+ +A     T+  + 
Sbjct: 534 LVYPERKFRVGSKVKGRLLAHKGKTPLVTLRKSLVNLEDDEILSSFDDAKVGSKTNAIVE 593

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           K    G  V F+  ++ F P++E+      + S    +GQVV  +I+      +R+ ++ 
Sbjct: 594 KFVHGGVLVSFFGSLRAFLPKTEISETFVDDASKYLKLGQVVNVKILDINEEQKRLVVT- 652

Query: 655 MMKPTRVSEDDLVKLGSLVSGV-----VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HL 708
           + + +++S     ++ +L+ G+     V V   N  V+  +     +G +    L+D + 
Sbjct: 653 LKQSSQLSASQKTEIANLIPGISVVHAVVVEKKNDSVLIELEGSNLRGVVHDGQLSDGNY 712

Query: 709 EHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 765
           E    +   ++   + + L++  D ++  ++ +AK SLI +++  QLP+D   + PN ++
Sbjct: 713 EQNRALFKKLEISSKVEVLILEKDLKARTVIATAKKSLIEASKKKQLPTDFDDVQPNRII 772

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            GYV ++   G FV F GRLTG             DLSK +Y  QS+   +L V+SE  R
Sbjct: 773 KGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRFYKYQSLTCKVLSVDSENKR 832

Query: 826 ITLSLKQSCCSSTD 839
             L++     S  D
Sbjct: 833 FLLTIANGKDSDGD 846



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 174/782 (22%), Positives = 331/782 (42%), Gaps = 113/782 (14%)

Query: 738  LLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L++ + SL+N    ++ S        S  +  V   +  G  V F G L  F P+++  +
Sbjct: 560  LVTLRKSLVNLEDDEILSSFDDAKVGSKTNAIVEKFVHGGVLVSFFGSLRAFLPKTEISE 619

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                D SK   +GQ V   ILD+N E  R+ ++LKQS                       
Sbjct: 620  TFVDDASKYLKLGQVVNVKILDINEEQKRLVVTLKQS----------------------- 656

Query: 857  QSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 915
              S+ + S+   +   I G SV+   V E  +  V++  E  S++ G +   QL+    E
Sbjct: 657  --SQLSASQKTEIANLIPGISVVHAVVVEKKNDSVLIELE-GSNLRGVVHDGQLSDGNYE 713

Query: 916  SGSVIQAAILDVAKAERLV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
                +   +   +K E L+   DL  +TV         S  +A KKK+      D+  ++
Sbjct: 714  QNRALFKKLEISSKVEVLILEKDLKARTVIA---TAKKSLIEASKKKQLPTDFDDVQPNR 770

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 1032
             +   V+ V    L ++       +  A     +  +   K+F   QS+   V+++ S +
Sbjct: 771  IIKGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRFYKYQSLTCKVLSVDSEN 830

Query: 1033 TAGRLLLLLKAISETETSS-----SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
               R LL +    +++  +         K    Y  G   +A I  +K  +L ++     
Sbjct: 831  K--RFLLTIANGKDSDGDNLINPVDPTKKTIEDYASGIYTKAIIKSVKGTQLNVRLADNL 888

Query: 1088 HGRIHITEV---NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD----------MKKSF 1134
            +GR+ +T+      D  N+++ L S F  G+ +  ++I   +  +            K  
Sbjct: 889  NGRVDVTQCFKSTKDIKNLLQPLSSGFHKGEELNVKVIGIHDAKNHTFLPITHNKTNKQT 948

Query: 1135 LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            + ELS++   +    +    L    DV  G +   +V  +D  +  ++IS  +K ++  +
Sbjct: 949  IMELSLQDPQVRKKNLSDLKL---PDVQKGDKFVAFVNNIDRGFVWVSISPSIKGRISFM 1005

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP-----FQDGISDKTVDIS 1249
            D + + S   +F+ ++ IG A+   V  ++ E + L L  R      F+D + DKT    
Sbjct: 1006 DLSDDGSIFYDFENKYPIGAALQVKVKEVDNEHQTLSLTSREQYISKFEDVVKDKT---- 1061

Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
                    +   I+  + S +L  +G  V+                +  ++D L+ Y + 
Sbjct: 1062 --------YPARIIKVKDSYVLVDLGDKVIA---------------SSFITDALNDYSD- 1097

Query: 1310 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1369
            + D    +   ++V   VL+I         + +SLR                D D+  K 
Sbjct: 1098 KLD--HAFHVNEYVGATVLDIDV---DQHKISVSLR----------------DKDSMDKT 1136

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            +  I+DLS   +V+G+VKNV+S G ++ L R + A V +S+LSD Y++  +K F   + V
Sbjct: 1137 INSIKDLSRGDVVKGFVKNVSSNGVYVSLGRSVYALVRVSDLSDSYLKDWKKFFKPNQSV 1196

Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             G++++ +    R+ +TLK S+     ++ + +  +L VGD+  G + +   +G+F+ ++
Sbjct: 1197 TGKIINCKE-EGRILMTLKESEVNGELKT-MKSFDDLAVGDVFEGHVTKTTDFGVFVKLD 1254

Query: 1490 NT 1491
             T
Sbjct: 1255 GT 1256



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 179/449 (39%), Gaps = 72/449 (16%)

Query: 543  FKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            F  G EL  +V+G+   +    + +TH KT  ++ + +     +   + ++   +  ++K
Sbjct: 915  FHKGEELNVKVIGIHDAKNHTFLPITHNKTNKQTIMELSLQDPQVRKKNLSDLKLPDVQK 974

Query: 599  HGCFVRFYNGV-QGF-----APR-----SELGL-DPGC---EPSSMYHVGQVVKCRIMSS 643
               FV F N + +GF     +P      S + L D G    +  + Y +G  ++ ++   
Sbjct: 975  GDKFVAFVNNIDRGFVWVSISPSIKGRISFMDLSDDGSIFYDFENKYPIGAALQVKVKEV 1034

Query: 644  IPASRRINLSFMMKPTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVY---VIAKGYSKGTI 699
               +    LS   +   +S+ +D+VK  +  + ++ V     +V     VIA  +   T 
Sbjct: 1035 --DNEHQTLSLTSREQYISKFEDVVKDKTYPARIIKVKDSYVLVDLGDKVIASSFI--TD 1090

Query: 700  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
                 +D L+HA  +        E+    VLD +     +S      +S  +  +    +
Sbjct: 1091 ALNDYSDKLDHAFHVN-------EYVGATVLDIDVDQHKISVSLRDKDSMDKTINSIKDL 1143

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
                VV G+V N+   G +V     +      S   D    D  K +   QSV   I++ 
Sbjct: 1144 SRGDVVKGFVKNVSSNGVYVSLGRSVYALVRVSDLSDSYLKDWKKFFKPNQSVTGKIINC 1203

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF---IIGS 876
              E GRI ++LK+S                            NG ELK ++ F    +G 
Sbjct: 1204 KEE-GRILMTLKESEV--------------------------NG-ELKTMKSFDDLAVGD 1235

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
            V EG V ++ DFGV V  +   +V G   H +++   V++       G  ++  IL +  
Sbjct: 1236 VFEGHVTKTTDFGVFVKLDGTVNVSGLCHHTEISENDVKNVMALFGEGDRVKVKILKIDP 1295

Query: 930  AERLVDLSLKTVFIDRFREANSNRQAQKK 958
            +++ + L +K  +   F E  S    + K
Sbjct: 1296 SKKQLSLGMKASYFKDFVEDESEVDVEMK 1324



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 166/384 (43%), Gaps = 45/384 (11%)

Query: 1066 LVQAEITEIKPLE--LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            L   EI ++ P    +++KF   F G +    ++D K    E     F++G  V  R++A
Sbjct: 497  LPSCEIIKVLPDSGGIQVKFLEEFQGFVPPNHMSDIKLVYPER---KFRVGSKVKGRLLA 553

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
               K  +       ++++ S++ + +   ++L    D  +G +    V K  +   L++ 
Sbjct: 554  HKGKTPL-------VTLRKSLVNLED--DEILSSFDDAKVGSKTNAIVEKFVHGGVLVSF 604

Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
               L+A  F+  +    + + +  +   +G+ V   +L IN+E+K L + L+      + 
Sbjct: 605  FGSLRA--FLPKTEISETFVDDASKYLKLGQVVNVKILDINEEQKRLVVTLKQSSQLSAS 662

Query: 1244 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
            +  +I+N      +    +V  +   +L  + G       +L G VH  +L     SD  
Sbjct: 663  QKTEIANLIPGISVVHAVVVEKKNDSVLIELEG------SNLRGVVHDGQL-----SDGN 711

Query: 1304 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1363
               +   F  L         K +VL + + ++    +  + +S ++   ++    L TD 
Sbjct: 712  YEQNRALFKKLEISS-----KVEVLILEKDLKARTVIATAKKSLIE---ASKKKQLPTDF 763

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
            D          D+ PN I++GYVK+VT+ G F+  + +L   +L   +S    E   K F
Sbjct: 764  D----------DVQPNRIIKGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRF 813

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTL 1447
               + +  +VLSV+  +KR  +T+
Sbjct: 814  YKYQSLTCKVLSVDSENKRFLLTI 837


>gi|453087833|gb|EMF15874.1| nucleic acid-binding protein [Mycosphaerella populorum SO2202]
          Length = 1804

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 330/1399 (23%), Positives = 584/1399 (41%), Gaps = 188/1399 (13%)

Query: 53   VFPRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL 110
             FPRGGG  LT  ER +I   AE D  FE              ++T +KA E  DD G L
Sbjct: 59   AFPRGGGSVLTPIERKQIEAQAERDVLFE--------------QETGQKA-EAKDDDGEL 103

Query: 111  F-----------------GDGISGKLPRYANK------ITLKNISAGMKLWGVVAEVNEK 147
            F                 GDG    LP+          ++ K ++ G  + G V  +  +
Sbjct: 104  FDKVDSAPAKKKRKTTRKGDG----LPQVEGSGVKISGLSYKTLAVGSVVLGRVTAITGR 159

Query: 148  DLVICLPGGLRGLA-------RAADALDPILDN-------EIEANEDNLLPTIFHVGQLV 193
            D+ + LP  L G         R    ++ +LD+       + E +ED  L  +FHVGQ +
Sbjct: 160  DVALALPNNLTGYVPITAVSERLTARIERMLDDAKSGADEDDEDDEDIDLKQLFHVGQWL 219

Query: 194  SCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 252
               V     D  E   K+ I LSL  + +  GL  + V    V+ A V+S+EDHG I+  
Sbjct: 220  RATVTSTGTDPAEGKSKKHIELSLDPTTVNGGLPEDNVVVNSVVQAAVRSVEDHGLIMDL 279

Query: 253  GLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV-T 308
            GL   S  GF+ +  L     +D V+ G ++  +V       KV+ +S DP  +S  +  
Sbjct: 280  GLSDESVKGFVSKKELGYAYDLDKVQEGQVMLCLVTGKGSNGKVLKISPDPSRMSLALGD 339

Query: 309  KDLKGI----SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT-FPTTNW 363
            K L  I    S+D ++PG  V   +     +GV+   +     T D  H Q       + 
Sbjct: 340  KKLPTISDAPSVDAILPGTAVDVLITESGPSGVVGKIMGMLDVTADAIHSQAIGLEEKDM 399

Query: 364  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL 423
               Y    K +ARI+F  P       T     L    P S V      + +K+ +V +  
Sbjct: 400  SKKYKVGSKTHARIVFAIPEDDGARRT-QAAELGQLLPMSSV-----VEDAKITQVSQNK 453

Query: 424  GLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGL 476
            GL L + +       S  A+  IS ++++ +  L      Y   S  +VRI+G+  ++ +
Sbjct: 454  GLYLKLSAKHGRDERSVTAFAHISQISDKRIESLSSTSGPYTIDSAHKVRIIGYSPIDNI 513

Query: 477  ATGILKASAFEGLVFTHSDVKPGMVVKG---KVI---AVDSFGAIVQFPGGVKALCPLPH 530
                LK S  +       D+  G VV G   K+I   A    G +V+    +  L P  H
Sbjct: 514  YYVSLKQSVLDQAFLRLDDLTVGAVVNGTVDKIILGGATGLTGILVKLSDNITGLVPEQH 573

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV-KSKLAILSSYAEATDRL 587
            +S+ ++  P +K++ G  +  R+L V +++  + +T KK LV  +   I  +Y      +
Sbjct: 574  ISDAQLKNPERKYREGFPVKARILSVDTEKRHVRLTLKKQLVDDANEEIWKAYQGLQPGM 633

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
             + G I K+  +G  V+FY  V+ + P +E+       P   +  GQ V+ +I+S  P +
Sbjct: 634  ESKGTIIKLHPNGAVVQFYGPVRAWLPVAEMSETFIERPEQHFRSGQTVRVKIVSVSPDT 693

Query: 648  RRINLS----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
              + ++          +    D V  G LVSG   V   +A  + +  +   +G +   H
Sbjct: 694  EEMKVTCKDHVAFGADQEQAWDKVAGGQLVSGT--VTEKSAESISLDLESGLRGMMRLTH 751

Query: 704  LAD-HLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQ--QLPSDASH 758
              D  L  A      ++ G +   LLVLD  + S  ++LS K SL+  A+   L S  S 
Sbjct: 752  FVDGSLAKAEKEAKRVRVGQKLKHLLVLDKIDRSQTVMLSNKPSLVEDAKAGNLISTFSD 811

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK----AVD----GQRADLSKTYYVGQ 810
            +   + VHG+V N      FV F   + G  P+S+    A+D    G R D        Q
Sbjct: 812  VKQGTKVHGFVRNTTSDAIFVEFANGIVGLLPKSQILAEALDKPDFGVRKD--------Q 863

Query: 811  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            ++   ++D +    R  L++++   ++  +S  +    +++ +     SK     LK + 
Sbjct: 864  TLNVWVMDTDVSAKRFRLTMREQAATAEQSSNPKAS--IDDAL-----SKPIDPALKSLS 916

Query: 871  GFIIGSVIEGKVHE----------SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
                G V + ++            +++    V   E  D +  I++      + +   +I
Sbjct: 917  DIEPGKVTKARIASIRATQINVRLADNVQGRVDVSEVFDSWDEISNKAAPLQSFKQNDLI 976

Query: 921  QAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
               +L +  A+  R +  S +   +  F  +    + QK  +     + +    +  A V
Sbjct: 977  DVKVLGIHDARNHRFLPFSHRQGKVPVFELSAKKSRVQKDDKSLLDLESVKPGSSQLAFV 1036

Query: 979  EIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGR 1036
                EN + ++L P     +    +SD   Q +  + +F  G ++   V A+  S  AGR
Sbjct: 1037 NNHAENCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVNVKAVDIS--AGR 1094

Query: 1037 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            L L  K     + +S+  A K  S   G ++ A + +     + ++        + + E+
Sbjct: 1095 LDLTAK----QDNASTPLALKDLSP--GMVLPARVIKATERAVSVELAKNLVAHVPLVEL 1148

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLF 1156
            +DD  ++  NL   +     V A +I+  + P+ K++F   +S++PS +    + S L  
Sbjct: 1149 SDDYDSI--NLM-QYSKNDIVRACVIS-VDAPN-KRAF---VSLRPSKV----LSSSLPV 1196

Query: 1157 EECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
            ++  +S          V G+V KV ++   +++   + A + I D + +   ++E++  +
Sbjct: 1197 KDAQISNVSQLKAADIVRGFVKKVADKGVFVSLGADVDALVRISDLSDQ--YVKEWRSIY 1254

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
             + + V G VLS++ + K ++L L+    DG  +  + I++      +  G  V G++ K
Sbjct: 1255 VVDQLVKGRVLSVDTDAKQVQLSLKQSHVDGNYEPPLGITD------LEAGMTVTGKVRK 1308

Query: 1270 ILS-GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
            +   G    +    P L G  H +E+                 D    Y  G  VK KVL
Sbjct: 1309 VEDFGAFIDIDNTQPRLSGLCHRSEVAARRTE-----------DVRKLYSAGDVVKAKVL 1357

Query: 1329 EISRTVRGTFHVELSLRSS 1347
            ++    R    + L L++S
Sbjct: 1358 KVDVENR---KISLGLKAS 1373



 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 225/1011 (22%), Positives = 411/1011 (40%), Gaps = 148/1011 (14%)

Query: 541  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH-----GWITK 595
            KK+KVG++   R++    +       +     +L  +SS  E  D  IT      G   K
Sbjct: 401  KKYKVGSKTHARIVFAIPEDDGARRTQAAELGQLLPMSSVVE--DAKITQVSQNKGLYLK 458

Query: 596  IE-KHGCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +  KHG   R    V  FA  S++    ++     S  Y +    K RI+   P      
Sbjct: 459  LSAKHG---RDERSVTAFAHISQISDKRIESLSSTSGPYTIDSAHKVRIIGYSPIDNIYY 515

Query: 652  LSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV----VYVIAKGYSKGTIPTEHL 704
            +S    ++    +  DDL  +G++V+G VD +          + V       G +P +H+
Sbjct: 516  VSLKQSVLDQAFLRLDDLT-VGAVVNGTVDKIILGGATGLTGILVKLSDNITGLVPEQHI 574

Query: 705  ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSA-QQLPSDASHIHPN 762
            +D        K   + G+    ++L +D E  ++ L+ K  L++ A +++      + P 
Sbjct: 575  SDAQLKNPERK--YREGFPVKARILSVDTEKRHVRLTLKKQLVDDANEEIWKAYQGLQPG 632

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
                G +  +   G  V+F G +  + P ++  +       + +  GQ+VR  I+ V+ +
Sbjct: 633  MESKGTIIKLHPNGAVVQFYGPVRAWLPVAEMSETFIERPEQHFRSGQTVRVKIVSVSPD 692

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
            T  + ++ K       D    QE     +K+A        G +L      + G+V E K 
Sbjct: 693  TEEMKVTCKDHVAFGAD----QEQAW--DKVA--------GGQL------VSGTVTE-KS 731

Query: 883  HESNDFGVVVSFEEHSDVYGF--ITHH---QLAGATVESGSVIQAA------ILDVAKAE 931
             ES      +S +  S + G   +TH     LA A  E+  V          +LD     
Sbjct: 732  AES------ISLDLESGLRGMMRLTHFVDGSLAKAEKEAKRVRVGQKLKHLLVLDKIDRS 785

Query: 932  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG-VHQTVNAIVEIVKENYLVLSL 990
            + V LS K   ++  +  N        K   + +K  G V  T +  + +   N +V  L
Sbjct: 786  QTVMLSNKPSLVEDAKAGNLISTFSDVK---QGTKVHGFVRNTTSDAIFVEFANGIVGLL 842

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ET 1049
            P+           D+  +K    Q LN       V  + +  +A R  L ++  + T E 
Sbjct: 843  PKSQILAEALDKPDFGVRK---DQTLN-------VWVMDTDVSAKRFRLTMREQAATAEQ 892

Query: 1050 SSSKRA--------------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095
            SS+ +A              K  S  + G + +A I  I+  ++ ++      GR+ ++E
Sbjct: 893  SSNPKASIDDALSKPIDPALKSLSDIEPGKVTKARIASIRATQINVRLADNVQGRVDVSE 952

Query: 1096 VNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSM 1144
            V D    +        +FK    +  +++   +  + +         K  ++ELS K S 
Sbjct: 953  VFDSWDEISNKAAPLQSFKQNDLIDVKVLGIHDARNHRFLPFSHRQGKVPVFELSAKKSR 1012

Query: 1145 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1204
            +   +   K L +   V  G     +V         + +S +++ ++ ++D + +  +LQ
Sbjct: 1013 VQKDD---KSLLDLESVKPGSSQLAFVNNHAENCVWVNLSPNVRGRVALMDLSDDVGQLQ 1069

Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1264
              + RF IG A+  +V +++     L L  +               DN  T +   D+  
Sbjct: 1070 NVENRFRIGCALRVNVKAVDISAGRLDLTAK--------------QDNASTPLALKDLSP 1115

Query: 1265 GRI--SKILSGVGGLV-VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1321
            G +  ++++      V V++  +L   V   EL +         YD      L  Y +  
Sbjct: 1116 GMVLPARVIKATERAVSVELAKNLVAHVPLVELSD--------DYDSIN---LMQYSKND 1164

Query: 1322 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1381
             V+  V+ +    +  F   +SLR S           LS+ +      +  +  L    I
Sbjct: 1165 IVRACVISVDAPNKRAF---VSLRPS---------KVLSSSLPVKDAQISNVSQLKAADI 1212

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G+VK V  KG F+ L   +DA V +S+LSD YV+     + + +LV GRVLSV+  +K
Sbjct: 1213 VRGFVKKVADKGVFVSLGADVDALVRISDLSDQYVKEWRSIYVVDQLVKGRVLSVDTDAK 1272

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            +V+++LK S      +  +  +++L  G  V G++++VE +G FI I+NT 
Sbjct: 1273 QVQLSLKQSHVDGNYEPPL-GITDLEAGMTVTGKVRKVEDFGAFIDIDNTQ 1322


>gi|342879204|gb|EGU80461.1| hypothetical protein FOXB_09018 [Fusarium oxysporum Fo5176]
          Length = 1790

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 218/841 (25%), Positives = 373/841 (44%), Gaps = 78/841 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEV------DAEFEAVERGLHKKNKKKKKKTERKANE 102
           +D P+FPRGG   LT  E+ +I  E       D EF    +   KK +K   K ++K+++
Sbjct: 59  EDEPMFPRGGASVLTPLEQKKIQLEAKADAMRDEEFNTGNKVQKKKKRKTALKGDKKSDK 118

Query: 103 TVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG--- 159
                      G   +  R  + ++ KN+  G  +   V  +N  DL + LP  L G   
Sbjct: 119 KT---------GEEEQAVRIES-LSFKNLVKGSLVLAQVTRINNLDLEVALPNNLTGHIS 168

Query: 160 LARAADALDPILDNEIEANEDNL-----------LPTIFHVGQLVSCIVLQLDDDKKE-I 207
           +   +  L   L+NE    +D             L +IF VGQ +   V    ++     
Sbjct: 169 IVAMSQQLTDRLENETAEKDDEEDDEAEDDEGIDLKSIFAVGQYLRAYVASTAEESTAGK 228

Query: 208 GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
            KR+I LSLR +    GL+ + V     + A + S+ED G+++  G+ +   FL ++ + 
Sbjct: 229 SKRRIELSLRPNEANTGLAKDDVVPNTTVMASIVSVEDRGFVMDTGIENLGAFLAKSEVD 288

Query: 268 ENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMM 324
           +N  ID   ++PG +    V S     K+  LS     +    +      +I+  +PG M
Sbjct: 289 KN--IDEQRLQPGAVFLCQVTSKGANGKIAQLSLQQKKIGNPKSVPADATTINTFLPGTM 346

Query: 325 VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
               + +    G+    + +   T DI          +    Y    +V AR++   P +
Sbjct: 347 ADVLISNTDRRGLSGKIMGHLDVTADIIQSGAGPAGVSLDTAYKIGSRVKARVICNFPGA 406

Query: 385 R--AVGLTLNPYL--LHNRAP---------PSHV-KVGDIYDQSKVVRVDRGLGLLLDIP 430
           R   +G++L P++  L  + P         P+ V  +  + +   V  V+  +GL +DI 
Sbjct: 407 REPKLGISLLPHITALEKKRPTKSTDSKKNPTQVLPISSLVETCTVRHVEPDIGLFVDIG 466

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 487
              +S   +V IS V + +V  L +    YK  S  + R++G+  ++GL     + S  E
Sbjct: 467 IPGLS--GFVHISRVKDGKVEALYEASGPYKVDSEHKGRVIGYNEMDGLFQISFEKSVLE 524

Query: 488 GLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKK 542
                  DV  G VV   +  + +D  G    +V+   G+    P  H S+ ++  P KK
Sbjct: 525 QQYLRLEDVPIGAVVTCNIEKVLIDEKGVSGLVVKVAEGITGFVPEQHFSDVKLQHPEKK 584

Query: 543 FKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           F+ G ++  RVL   +  K++ +T KKTLV S+  ++ +Y EA+  +   G I KI+  G
Sbjct: 585 FRQGMKVKARVLSTNLSKKQMRLTLKKTLVNSEAPVIKAYEEASVGMQIPGTIIKIQSSG 644

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
             ++F+  VQGF P SE+      +P   +  GQVV   ++   P S+R+ +S    P+ 
Sbjct: 645 AIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSVHVLDVEPESKRLVVS-CKDPSA 703

Query: 661 VSEDDL-----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATV 713
              D       ++LG +VS  V   T + V V  +A    K  +P  HL D    ++   
Sbjct: 704 FGLDKQNALKKLQLGDIVSAKVTQKTEDQVFVE-LADAQLKAILPVGHLTDKSTSKNQYA 762

Query: 714 MKSVIKPGYEFDQLLVLDNESSN-LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVC 770
           +K +       D ++V  NE+   ++LS K SL+++ +   L +         +V G+V 
Sbjct: 763 LKRIAVGQTLSDLVIVEKNENRRAVILSHKPSLVSAGKDKTLLTSFEDAKEGKIVAGFVR 822

Query: 771 NIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSK-TYYVGQSVRSNILDVNSETGRITL 828
           NI  T  FV+F G +    P+++ A D Q  DL     +  QS+   I+ V  +  RI +
Sbjct: 823 NITVTAVFVQFGGAVNALLPKARLAADIQ--DLPDFGMHKHQSIEVKIVSVIPDHKRIVV 880

Query: 829 S 829
           +
Sbjct: 881 A 881



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 237/1071 (22%), Positives = 442/1071 (41%), Gaps = 178/1071 (16%)

Query: 486  FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA--LCPLPHMSEFEIVKPGKKF 543
              G +  H DV   ++  G   A  S     +    VKA  +C  P   E          
Sbjct: 359  LSGKIMGHLDVTADIIQSGAGPAGVSLDTAYKIGSRVKARVICNFPGAREP--------- 409

Query: 544  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCF 602
            K+G  L+  +  ++ KR T +       +++  +SS  E          +  +E   G F
Sbjct: 410  KLGISLLPHITALEKKRPTKSTDSKKNPTQVLPISSLVETCT-------VRHVEPDIGLF 462

Query: 603  VRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
            V     G+ GF   S +    ++   E S  Y V    K R++          +SF    
Sbjct: 463  VDIGIPGLSGFVHISRVKDGKVEALYEASGPYKVDSEHKGRVIGYNEMDGLFQISF---E 519

Query: 659  TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS----------KGTIPTEHLAD-H 707
              V E   ++L  +  G V  VT N   V +  KG S           G +P +H +D  
Sbjct: 520  KSVLEQQYLRLEDVPIGAV--VTCNIEKVLIDEKGVSGLVVKVAEGITGFVPEQHFSDVK 577

Query: 708  LEHATVMKSVIKPGYEFDQLLVLDNESS-NLLLSAKYSLINSAQQLPSDASHIHPNSVVH 766
            L+H    +   + G +    ++  N S   + L+ K +L+NS   +            + 
Sbjct: 578  LQHP---EKKFRQGMKVKARVLSTNLSKKQMRLTLKKTLVNSEAPVIKAYEEASVGMQIP 634

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G +  I  +G  ++F G + GF P S+  +    D  + +  GQ V  ++LDV  E+ R+
Sbjct: 635  GTIIKIQSSGAIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSVHVLDVEPESKRL 694

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             +S K               F L+++ A+              +   +G ++  KV +  
Sbjct: 695  VVSCKDPSA-----------FGLDKQNAL--------------KKLQLGDIVSAKVTQKT 729

Query: 887  DFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
            +  V V   + + +   +    L   T +S S  Q A+  +A  + L DL +        
Sbjct: 730  EDQVFVELAD-AQLKAILPVGHL---TDKSTSKNQYALKRIAVGQTLSDLVI-------- 777

Query: 947  REANSNRQA---QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS-------------- 989
             E N NR+A     K     A KD    +T+    E  KE  +V                
Sbjct: 778  VEKNENRRAVILSHKPSLVSAGKD----KTLLTSFEDAKEGKIVAGFVRNITVTAVFVQF 833

Query: 990  -------LPEYNHSIGYASVSDYNTQKFPQKQFLNGQSV-IATVMALPSSSTAGRLLLLL 1041
                   LP+   +     + D+   K         QS+ +  V  +P      R+++  
Sbjct: 834  GGAVNALLPKARLAADIQDLPDFGMHKH--------QSIEVKIVSVIPDHK---RIVVAP 882

Query: 1042 KAISET-----ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITE 1095
                E+     +  +S +       + G++ +A+IT IK  +L ++       GRI +++
Sbjct: 883  ADFDESAELDKKAKASDKPAASDDIEFGTVAKAKITSIKDTQLNVQLVDSKVQGRIDVSQ 942

Query: 1096 VNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSML 1145
            + D   ++ +  +    +   QTV+ R++    AK ++  P   +S   + EL+ KPS L
Sbjct: 943  IFDKWEDIPDPKDPLDKYHKKQTVSVRVMGVHSAKDHRFLPFSHRSLHSVLELTAKPSDL 1002

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
                +   L  E  ++ +G     +V     +   + +S  ++ ++  ++++ + S+L +
Sbjct: 1003 KAKTL-EPLSLE--NLKVGDTYVAFVNNSSPQHLWVNLSPSVRGRISAMEASDDLSQLND 1059

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
             +  F +G A+   V  ++   K L L  R      S +TV  S       + +  ++ G
Sbjct: 1060 LEANFPVGSALKVRVTGVDARNKRLDLSARSSS---SSETVTWSA------LKQNMVLPG 1110

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQFV 1323
            R++K+      ++V++   + G VH  ++ +              FD ++   +  G+ V
Sbjct: 1111 RVTKV--NERQVLVKLSELVSGPVHLPDMAD-------------DFDTVNTLKQKKGEIV 1155

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            +  ++E+  + +    + LS R S   MSST        +    K +  +  L    IV+
Sbjct: 1156 RVSIVELDASNK---RLRLSTRPSRI-MSST--------LPVKDKEISDVSQLDAGDIVR 1203

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G+VKNV+ KG F++L  ++ A V +SNLSD Y++  +  F I +LV GRV++V+  ++ V
Sbjct: 1204 GFVKNVSDKGLFVLLGGQVTALVKISNLSDRYLKEWKDHFQIDQLVKGRVIAVDKQTRHV 1263

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            E++LK+S         I   +++  G +V G++++VE +G FI I+N++ V
Sbjct: 1264 ELSLKSSVVDEDYTPPI-TYNDIKEGQVVTGKVRKVEEFGAFILIDNSDNV 1313



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 137/312 (43%), Gaps = 35/312 (11%)

Query: 543  FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            F VG+ L  RV GV  ++KR+ ++ + +     +    +++     ++  G +TK+ +  
Sbjct: 1064 FPVGSALKVRVTGVDARNKRLDLSARSSSSSETV----TWSALKQNMVLPGRVTKVNERQ 1119

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
              V+    V G     ++  D     +     G++V+  I+    +++R+ LS   +P+R
Sbjct: 1120 VLVKLSELVSGPVHLPDMADDFDTVNTLKQKKGEIVRVSIVELDASNKRLRLS--TRPSR 1177

Query: 661  VSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
            +    L            +  G +V G V  V+   +  +V+  G     +   +L+D  
Sbjct: 1178 IMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGL--FVLLGGQVTALVKISNLSDRY 1235

Query: 709  EHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
                 +K   K  ++ DQL     + +D ++ ++ LS K S+++     P   + I    
Sbjct: 1236 -----LKE-WKDHFQIDQLVKGRVIAVDKQTRHVELSLKSSVVDEDYTPPITYNDIKEGQ 1289

Query: 764  VVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            VV G V  + E G F+       ++G   RS+  +    D +K Y  G +V++ +L+V+ 
Sbjct: 1290 VVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQMAENPVKDATKLYKEGDAVKARVLEVDI 1349

Query: 822  ETGRITLSLKQS 833
               R+T  LK S
Sbjct: 1350 NKRRVTFGLKPS 1361



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 161/395 (40%), Gaps = 57/395 (14%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG    A +    P  L +       GRI   E +DD S +  +L +NF +G  +  R+ 
Sbjct: 1017 VGDTYVAFVNNSSPQHLWVNLSPSVRGRISAMEASDDLSQL-NDLEANFPVGSALKVRVT 1075

Query: 1123 ---AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
               A++ + D+        S     +T S +   ++             G V KV+    
Sbjct: 1076 GVDARNKRLDLSA----RSSSSSETVTWSALKQNMVL-----------PGRVTKVNERQV 1120

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
            L+ +S  +   + + D A +   +   +++   G+ V   ++ ++   K LRL  RP + 
Sbjct: 1121 LVKLSELVSGPVHLPDMADDFDTVNTLKQK--KGEIVRVSIVELDASNKRLRLSTRPSR- 1177

Query: 1240 GISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
             I   T+ + +  +   + +  GDIV G +  +     GL V +G  +   V  + L + 
Sbjct: 1178 -IMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDK--GLFVLLGGQVTALVKISNLSDR 1234

Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
             + +     D  Q D        Q VK +V+ + +  R   HVELSL+SS+         
Sbjct: 1235 YLKE---WKDHFQID--------QLVKGRVIAVDKQTR---HVELSLKSSV--------- 1271

Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGY 1415
             +  D   P  +     D+    +V G V+ V   G FI++    +   L   S +++  
Sbjct: 1272 -VDEDYTPPITY----NDIKEGQVVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQMAENP 1326

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            V+   K +  G  V  RVL V+   +RV   LK S
Sbjct: 1327 VKDATKLYKEGDAVKARVLEVDINKRRVTFGLKPS 1361



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 165/375 (44%), Gaps = 52/375 (13%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGIDV 274
            LSLE ++ G    A+V +       ++   PS  G +            N+L  N  +  
Sbjct: 1010 LSLENLKVGDTYVAFVNNSSPQHLWVNLS-PSVRGRISAMEASDDLSQLNDLEANFPV-- 1066

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
              G  L+  V  +D   K + LS+   + S+ VT     +  ++++PG     RV  + E
Sbjct: 1067 --GSALKVRVTGVDARNKRLDLSARSSSSSETVT--WSALKQNMVLPG-----RVTKVNE 1117

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLTLN 392
              V++      +G V +  + + F T N      Q K   V   I+ +D +++ + L+  
Sbjct: 1118 RQVLVKLSELVSGPVHLPDMADDFDTVN---TLKQKKGEIVRVSIVELDASNKRLRLSTR 1174

Query: 393  P-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVTIS 443
            P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V IS
Sbjct: 1175 PSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVKIS 1229

Query: 444  DVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE-GLATGILKASAFEGLVFTHSDVKP 498
            ++++  +++ +  ++    V+ R++      RH+E  L + ++       +  T++D+K 
Sbjct: 1230 NLSDRYLKEWKDHFQIDQLVKGRVIAVDKQTRHVELSLKSSVVDEDYTPPI--TYNDIKE 1287

Query: 499  GMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            G VV GKV  V+ FGA  ++     V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1288 GQVVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQMAENPVKDATKLYKEGDAVKARVLEV 1347

Query: 557  --KSKRITVTHKKTL 569
                +R+T   K +L
Sbjct: 1348 DINKRRVTFGLKPSL 1362



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 122/279 (43%), Gaps = 33/279 (11%)

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKP 1128
            +T++   ++ +K      G +H+ ++ DD   V  N     K G+ V   I+    SNK 
Sbjct: 1112 VTKVNERQVLVKLSELVSGPVHLPDMADDFDTV--NTLKQ-KKGEIVRVSIVELDASNK- 1167

Query: 1129 DMKKSFLWELSIKPSMLTVS--EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1186
                     LS +PS +  S   +  K + +   +  G  V G+V  V ++   + +   
Sbjct: 1168 ------RLRLSTRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQ 1221

Query: 1187 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            + A + I  S      L+E++  F I + V G V++++K+ + + L L+     + D+  
Sbjct: 1222 VTALVKI--SNLSDRYLKEWKDHFQIDQLVKGRVIAVDKQTRHVELSLK---SSVVDE-- 1274

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D +       I EG +V G++ K+      +++    ++ G  H +++      +P+   
Sbjct: 1275 DYTPPITYNDIKEGQVVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQM----AENPVK-- 1328

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEIS-RTVRGTFHVELSL 1344
                 D    Y EG  VK +VLE+     R TF ++ SL
Sbjct: 1329 -----DATKLYKEGDAVKARVLEVDINKRRVTFGLKPSL 1362


>gi|260950407|ref|XP_002619500.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
 gi|238847072|gb|EEQ36536.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
          Length = 1677

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 229/838 (27%), Positives = 368/838 (43%), Gaps = 93/838 (11%)

Query: 54  FPRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHK--------KNKKKKKKTERKANET 103
           FPRGGG  LT  E   I   A  D  FE  +             K +KK+ KT     ET
Sbjct: 16  FPRGGGSVLTPLEMKTISNKATEDVLFEQAQASKRSGGSTSHPAKKRKKQSKTAVSKTET 75

Query: 104 VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---- 159
            +        GIS       + +TLKN+  G ++ G +  V++ DLV+ +   L G    
Sbjct: 76  EEK-------GIS------VDHMTLKNLIPGCEVLGQIVRVDKMDLVLAITDNLVGRVPI 122

Query: 160 ----------LARAADALDPILDNEIE-----ANEDNLLPTIFHVGQLVSCIVLQLDDDK 204
                     L +   A+D   + + E     A E   L ++F  GQ +  IV    +  
Sbjct: 123 TAIGAEVSAMLEKYEAAMDSSDEEDDEPTQSFAPEFPKLASLFEPGQWLRAIVTPTPE-- 180

Query: 205 KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRN 264
              G+R + LS+  S +   +  +    G ++ A VKSIEDHG +L+ G+   +GFL + 
Sbjct: 181 ---GQRGLHLSIAPSDVNASMESDDFTPGNIVQASVKSIEDHGVVLNLGVGKLSGFLSKK 237

Query: 265 NL--AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK-CVTKDLKGISIDLLVP 321
            L  A+        G ++   V S D  R V    ++ + VSK  V   +   SID + P
Sbjct: 238 ELKKADIPLSSFTVGKVILTSVASAD-ARTVSLRPAEKENVSKKTVVTTIS--SIDAVHP 294

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL--- 378
           G +V+  +  + ++GV          +  + H++  +     KN +     V ARI+   
Sbjct: 295 GTLVNAIIAELSDDGVAARLFGMVDASFTLPHVEE-YALEKLKNSFGIGSTVRARIIGTL 353

Query: 379 -------FVDPTSRAVG-LTLNPYLLHNRAPPSHVKVGDIYDQS-KVVRVDRGLGLLLDI 429
                  F+   SRA   L L P L  + +      VG I+D   +VV  D     L   
Sbjct: 354 LQNGTKKFI--LSRATAPLALQPEL--DSSALEAFPVGFIFDSGIEVVGADSDFIYL--- 406

Query: 430 PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 489
             +  S  A V  S V  E    +   Y  GS    R+LG+  ++ L    L        
Sbjct: 407 --STGSHMAQVHKSQVDPELDPNM--NYPVGSKHNARVLGYNRIDNLLVVTLNPKLIASK 462

Query: 490 VFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
             +  DV  G  +   ++I +  ++ G IV+  G  +AL P  HMS+ ++V P +KFKVG
Sbjct: 463 FVSADDVPVGEYIPAVEIIKILDEAKGMIVKIFGDFEALVPANHMSDIKLVYPERKFKVG 522

Query: 547 AELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            ++  RVL    K++ VT +K+LV  +  AI+S          T   + +    G  V F
Sbjct: 523 GKVKGRVLYKNGKKLFVTLRKSLVNMEDDAIVSDIENVVVGFKTTAIVDRFVPGGALVTF 582

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           +  ++ + P+SE+      E      +GQ V  RI+S      +I+++ + + T +S   
Sbjct: 583 FGKLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILSVNAEENKISVT-LRQSTELSNKQ 641

Query: 666 LVKLGSLVSG----VVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIK 719
           +  L S+  G      ++V      V +  +G + +G I T HL+D + E   ++   ++
Sbjct: 642 IEHLESISIGRTLVEANIVEKTKEAVIIELEGSNLRGVISTNHLSDGNYEENRIIYKNLE 701

Query: 720 PGYEFDQLLVLDNE--SSNLLLSAKYSLINSA--QQLPSDASHIHPNSVVHGYVCNIIET 775
            G    ++LVL+ +  +  ++ SAK SLI +A  + LP     IH  S+V GY+ ++   
Sbjct: 702 IGGSI-EVLVLEKDIRARTVIASAKKSLITAARTETLPVHYEDIHVGSMVPGYIKSVTNL 760

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G FV F GRLTG      A +    DLS  +Y  QSV  +++  + +  R  LSL  S
Sbjct: 761 GLFVSFGGRLTGLVLAKNATNDPTEDLSSKFYKNQSVVCDVIKTDDDNKRFLLSLTSS 818



 Score =  128 bits (321), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 219/1049 (20%), Positives = 428/1049 (40%), Gaps = 157/1049 (14%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            V PG +V   +  +   G   +  G V A   LPH+ E+ + K    F +G+ +  R++G
Sbjct: 292  VHPGTLVNAIIAELSDDGVAARLFGMVDASFTLPHVEEYALEKLKNSFGIGSTVRARIIG 351

Query: 556  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI--TKIEKHGC---FVRFYNGVQ 610
               +  T     +   + LA+      +       G+I  + IE  G    F+    G  
Sbjct: 352  TLLQNGTKKFILSRATAPLALQPELDSSALEAFPVGFIFDSGIEVVGADSDFIYLSTGSH 411

Query: 611  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN--LSFMMKPTR-----VSE 663
              A   +  +DP  +P+  Y VG     R++       RI+  L   + P       VS 
Sbjct: 412  -MAQVHKSQVDPELDPNMNYPVGSKHNARVL----GYNRIDNLLVVTLNPKLIASKFVSA 466

Query: 664  DDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            DD V +G  +  V  + +   A  + V   G  +  +P  H++D          ++ P  
Sbjct: 467  DD-VPVGEYIPAVEIIKILDEAKGMIVKIFGDFEALVPANHMSDI--------KLVYPER 517

Query: 723  EFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY-----VCNI 772
            +F      +  VL      L ++ + SL+N    +  DA      +VV G+     V   
Sbjct: 518  KFKVGGKVKGRVLYKNGKKLFVTLRKSLVN----MEDDAIVSDIENVVVGFKTTAIVDRF 573

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            +  G  V F G+L  + P+S+  +    +      +GQ+V   IL VN+E  +I+++L+Q
Sbjct: 574  VPGGALVTFFGKLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILSVNAEENKISVTLRQ 633

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVV 891
            S                         ++ +  +++ +E   IG +++E  + E     V+
Sbjct: 634  S-------------------------TELSNKQIEHLESISIGRTLVEANIVEKTKEAVI 668

Query: 892  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV---DLSLKTVFIDRFRE 948
            +  E  S++ G I+ + L+    E   +I   +      E LV   D+  +TV     + 
Sbjct: 669  IELE-GSNLRGVISTNHLSDGNYEENRIIYKNLEIGGSIEVLVLEKDIRARTVIASAKKS 727

Query: 949  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
              +  + +      E   D+ V   V   ++ V    L +S       +  A  +  +  
Sbjct: 728  LITAARTETLPVHYE---DIHVGSMVPGYIKSVTNLGLFVSFGGRLTGLVLAKNATNDPT 784

Query: 1009 KFPQKQFLNGQSVIATV-----------MALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
            +    +F   QSV+  V           ++L SS +AG         S+       + K 
Sbjct: 785  EDLSSKFYKNQSVVCDVIKTDDDNKRFLLSLTSSDSAGAF-----ESSKLSNPVDAQMKS 839

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQ 1115
            K+ Y VG      I  I+P  L+++      GR+   +      ++ +  N  ++F +G+
Sbjct: 840  KTDYAVGVSTFGVIDSIEPGYLKIRLADNLEGRVEANQCIRSWKSIKDPKNPLASFTVGE 899

Query: 1116 TVTARIIAKSNKPDMK-KSFLWELSIKPSM---LTVS--EIGSKLLFEE---CDVSIGQR 1166
             V  +++      D K  SF    + K +    LT +  ++ SK  ++     D+++G  
Sbjct: 900  KVPVKVLGTY---DYKWHSFTTAAAFKKTTVLSLTTAKDQLKSKSPYKPDQLSDITVGSE 956

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
               Y+ +  N  A ++++  +K ++ + + + + S+  +F   F +G A+  +V+ I+ E
Sbjct: 957  YVVYIERFHNGTAKVSLTPSIKGEISVYNLSDDMSKYSKFDESFPLGTALKANVIGIDFE 1016

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPH 1284
              +++L  R                N+ +F  +  GD    ++ K+      ++V++ P 
Sbjct: 1017 HGMVKLSAR--------------KQNLTSFTQLKVGDQYPAKVFKVTKSF--VLVELAPG 1060

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            L G  + T                   D L  YD         L++  T      V +++
Sbjct: 1061 LVGYSYIT-------------------DALDDYD---------LKLEETYHINQPVAVTI 1092

Query: 1345 RSSLD--GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
              +L+  G  S +  +  T  D P   +  I +L    +V+G++K + + G ++ L R L
Sbjct: 1093 TETLENEGKFSVSLRNEKTAKDKP---VNSISELHRGDVVKGFIKAINNAGLYVSLGRDL 1149

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1462
             A V +SN+SD ++   +K F   + + G+++  + +  R+ +TLK S+      ++   
Sbjct: 1150 FALVPVSNISDAFLVDWKKFFKPFQSIVGKIVQCK-VEGRITMTLKESE-LNGHLADYKT 1207

Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENT 1491
               L +G+I  G +K+V  YG+F+ ++ T
Sbjct: 1208 FDELEIGEIYDGTVKKVADYGVFVKLDGT 1236


>gi|189199792|ref|XP_001936233.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983332|gb|EDU48820.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1760

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 200/758 (26%), Positives = 345/758 (45%), Gaps = 62/758 (8%)

Query: 129 KNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEAN------- 178
           + +SAG  + G + +++ +DLV+ LP  L G   L   +D L+  L+  ++         
Sbjct: 148 QKLSAGTIVLGQIIDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKDEGAEKKEG 207

Query: 179 ------EDNLLPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 231
                 ED  L  +F VGQ + +CI    +D+ +   ++++ LS+   L+ KGL+   + 
Sbjct: 208 SEDGDFEDVDLKDMFSVGQYIRACITATNEDNAR--ARKRLELSIDPKLVNKGLTKRKIP 265

Query: 232 EGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSID 288
              ++ A V S EDHG ++  GL   +  GFLP+  L        V+ G +   +V  I+
Sbjct: 266 VNSMVQASVVSNEDHGLVMDLGLGDANLKGFLPKGELGPKIQHAKVQEGAVFMCLVTGIN 325

Query: 289 RTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
              ++V LS+D  T +  +TK     +  +ID+ +PG  V   V     + ++   L   
Sbjct: 326 SDGRIVKLSAD-HTKAGNITKGNTLTEAPTIDVFLPGTAVDILVADTTSSTLVGKILGLI 384

Query: 346 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL------- 396
             T D +H   T    +    Y    KV ARILF  P S  R VG++L  +++       
Sbjct: 385 DATADAYHSGATEKAADVSQKYKIGSKVKARILFTCPNSEPRKVGVSLLDHVVSLSTRMS 444

Query: 397 ---HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVR 451
                R PP   + +  I + +KVV+V    G   D+    V   A+++ +SD   + + 
Sbjct: 445 GKPKERKPPIDLLPISTIVESAKVVKVAPAQGAFFDLGIKDVVGFAHISRLSDDKVDVIS 504

Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAV 509
           +   ++K  S  + RI+G+  L+G+    L+    +       D++ G VVKGKV  +  
Sbjct: 505 EESGQFKLDSTHKARIIGYNALDGIFQLSLEQKVLDQPFLRIEDIQAGQVVKGKVHKLIA 564

Query: 510 DSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVT 564
           D  GA   +V    G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I +T
Sbjct: 565 DKTGAAAVLVHLADGITGLVPEAHLADVRLQHPERKFREGVPVTARVLYTEPARHQIQLT 624

Query: 565 HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
            KK+LV S     ++Y   ++ L   G +T + ++G  VRFY  V+ + P +E+      
Sbjct: 625 LKKSLVNSDTKPWTNYEMLSEGLTGPGILTSVRRNGATVRFYGDVKAWLPAAEMSEAFIN 684

Query: 625 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL-----VSGVVDV 679
           + +  +  GQVVK RI+ S+ A  R  L     P  V  +      +L     V G V  
Sbjct: 685 DATRHFTNGQVVKVRII-SVDAKERQLLVSCKDPAAVDNNREAAFNALNPSDIVKGTVLE 743

Query: 680 VTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDN--ESS 735
            + ++  +  I  G  KG +   HL D    +  + MK  I+ G   ++L+VL    ++ 
Sbjct: 744 KSDDSATLD-IGNGV-KGILRIGHLTDGSAKKDISTMKK-IRIGGTLEELVVLTKHGKTR 800

Query: 736 NLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
           +  +S K SL   AQ  +L      +     VHG+V  I+    FV     ++G   +S+
Sbjct: 801 SATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILPDKIFVELGNGISGVLFKSQ 860

Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +   ++ +      QS+ + +  V+   G   LS+K
Sbjct: 861 LPEEMISEPNFGLRKDQSISARVTHVDVGKGFFWLSMK 898



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 193/441 (43%), Gaps = 84/441 (19%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 1121
            G+L    I  +K  +L ++      GRI ++E+ D   ++ +  N  ++FK+ + V AR+
Sbjct: 936  GTLTTVRIKTVKSTQLNVELADNVQGRISVSELFDGWDSIPDKKNPTAHFKMNEKVQARV 995

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1173
            + + +  + +  FL   S       V E+ +    +  E DV      + G   T +V  
Sbjct: 996  LGRHDARNFR--FLPITSRSNHKTPVYEMTANTDKIKREADVLSLDKITPGSSHTAFVNN 1053

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            + + +  + IS +++           P +L            VTG  +S+          
Sbjct: 1054 IADRYVWVNISANVRG----------PGKLD-----LTAVSTVTGKTMSL---------- 1088

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                QD                 I  G I+  R++KI      +VVQI   L   +   +
Sbjct: 1089 ----QD-----------------IKVGYILPARVTKIHEA--SIVVQINEKLAAPIFLEQ 1125

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353
            L +                    YD  +  K KV ++ R       +++ + +   G+S+
Sbjct: 1126 LAD-------------------DYDMAKPNKFKVGDVLRVCV----IDIDIPNKKLGLSA 1162

Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
              S  LS+ +      ++    L  + +V+G++K+V S G ++ L   ++A V +S+LSD
Sbjct: 1163 RPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSD 1222

Query: 1414 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
             Y++  +  F + +LV G+++S +   +  +++LKTS  +  + +E    S+L VG IV 
Sbjct: 1223 EYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQ-GNYTEPLEFSDLKVGQIVT 1281

Query: 1474 GQIKRVESYGLFITIENTNLV 1494
             +++ VE +G+F+ ++N++ V
Sbjct: 1282 AKVRHVEDFGVFLVVDNSSNV 1302



 Score = 47.4 bits (111), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 33/286 (11%)

Query: 484  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIVKPGKK 542
            S   G   +  D+K G ++  +V  +     +VQ    + A   L  +++ +++ KP K 
Sbjct: 1079 STVTGKTMSLQDIKVGYILPARVTKIHEASIVVQINEKLAAPIFLEQLADDYDMAKPNK- 1137

Query: 543  FKVGAELVFRV----LGVKSKRITVTHKKTLV-KSKLAILSSYAEATDRLITH----GWI 593
            FKVG   V RV    + + +K++ ++ + + V  S L +     +   +L  H    G+I
Sbjct: 1138 FKVGD--VLRVCVIDIDIPNKKLGLSARPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFI 1195

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
              +  +G +VR    V+ +   S L  +   +  S +HV Q+V  +I+S+    R   +S
Sbjct: 1196 KHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMS 1255

Query: 654  F--------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
                       +P   S+   +K+G +V+  V  V    V + V       G      LA
Sbjct: 1256 LKTSVIQGNYTEPLEFSD---LKVGQIVTAKVRHVEDFGVFLVVDNSSNVSGLCHISQLA 1312

Query: 706  DHLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLI 746
            D+     V K  IK  Y+ D     +++ ++ +   +  + KYS I
Sbjct: 1313 DN----AVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLKYSQI 1354



 Score = 47.0 bits (110), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 144/346 (41%), Gaps = 62/346 (17%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGKAVT 1217
            D+ +G  +   V K+     ++ I+  L A +F+  L   Y+ ++      +F +G  + 
Sbjct: 1090 DIKVGYILPARVTKIHEASIVVQINEKLAAPIFLEQLADDYDMAK----PNKFKVGDVLR 1145

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVG 1275
              V+ I+   K L L  RP +   S  TV      D  Q  +H+  +V G I  + S   
Sbjct: 1146 VCVIDIDIPNKKLGLSARPSRVLSSSLTVRDPEIKDKSQLKVHQ--VVRGFIKHVASN-- 1201

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
            G+ V++GPH+   V  + L            DE   D  S +   Q V  K++      R
Sbjct: 1202 GVYVRLGPHVEAYVRVSHLS-----------DEYIKDWKSAFHVDQLVTGKIISNKEDQR 1250

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE--DLSPNMIVQGYVKNVTSKG 1393
               + ++SL++S+                  G + E +E  DL    IV   V++V   G
Sbjct: 1251 ---NPQMSLKTSV----------------IQGNYTEPLEFSDLKVGQIVTAKVRHVEDFG 1291

Query: 1394 CFIMLSRKLDAKVL--LSNLSDGYVESPEKE--FPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
             F+++    +   L  +S L+D  V+  + +  +    +V  +++ +EP  +++  TLK 
Sbjct: 1292 VFLVVDNSSNVSGLCHISQLADNAVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLKY 1351

Query: 1450 S---------DSRTASQSEINNLSNLHVG-----DIVIGQIKRVES 1481
            S         D   AS+ E+   S+   G     D+ +  +K  ES
Sbjct: 1352 SQIKGDGEDEDMEDASEDELAEESDSDGGIELDEDVDMRSVKSAES 1397



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 123/321 (38%), Gaps = 45/321 (14%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            +K+G ++   V  +   ++VV +  K      I  E LAD  + A   K   K G +  +
Sbjct: 1091 IKVGYILPARVTKIHEASIVVQINEK--LAAPIFLEQLADDYDMAKPNK--FKVG-DVLR 1145

Query: 727  LLVLDNESSN--LLLSAKYSLINSAQ---QLPS--DASHIHPNSVVHGYVCNIIETGCFV 779
            + V+D +  N  L LSA+ S + S+    + P   D S +  + VV G++ ++   G +V
Sbjct: 1146 VCVIDIDIPNKKLGLSARPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFIKHVASNGVYV 1205

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            R    +  +   S   D    D    ++V Q V   I+    +     +SLK S      
Sbjct: 1206 RLGPHVEAYVRVSHLSDEYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQG-- 1263

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                                  N +E        +G ++  KV    DFGV +  +  S+
Sbjct: 1264 ----------------------NYTEPLEFSDLKVGQIVTAKVRHVEDFGVFLVVDNSSN 1301

Query: 900  VYGFITHHQLAGATVE---------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
            V G     QLA   V+            V++A I+ +   +R +  +LK   I    E  
Sbjct: 1302 VSGLCHISQLADNAVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLKYSQIKGDGEDE 1361

Query: 951  SNRQAQKKKRKREASKDLGVH 971
                A + +   E+  D G+ 
Sbjct: 1362 DMEDASEDELAEESDSDGGIE 1382



 Score = 40.8 bits (94), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 26/209 (12%)

Query: 1039 LLLKAISETETSSSKRAKKKSSYD---VGSLVQ-AEITEIKP-----LELRLKFGIGFHG 1089
            LL   +S +   S K  ++K   D   + ++V+ A++ ++ P      +L +K  +GF  
Sbjct: 432  LLDHVVSLSTRMSGKPKERKPPIDLLPISTIVESAKVVKVAPAQGAFFDLGIKDVVGF-- 489

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1149
              HI+ ++DDK +V+      FK+  T  ARII   N  D     +++LS++  +L    
Sbjct: 490  -AHISRLSDDKVDVISEESGQFKLDSTHKARIIG-YNALDG----IFQLSLEQKVL---- 539

Query: 1150 IGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILDSAYEPSELQEF 1206
               +      D+  GQ V G V+K + ++     +  HL   +   + ++      LQ  
Sbjct: 540  --DQPFLRIEDIQAGQVVKGKVHKLIADKTGAAAVLVHLADGITGLVPEAHLADVRLQHP 597

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            +R+F  G  VT  VL     +  ++L L+
Sbjct: 598  ERKFREGVPVTARVLYTEPARHQIQLTLK 626



 Score = 40.8 bits (94), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSK-----GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            +IED+    +V+G V  + +         + L+  +   V  ++L+D  ++ PE++F  G
Sbjct: 545  RIEDIQAGQVVKGKVHKLIADKTGAAAVLVHLADGITGLVPEAHLADVRLQHPERKFREG 604

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKR 1478
              V  RVL  EP   ++++TLK S  +S T   +    LS    G  ++  ++R
Sbjct: 605  VPVTARVLYTEPARHQIQLTLKKSLVNSDTKPWTNYEMLSEGLTGPGILTSVRR 658


>gi|406867357|gb|EKD20395.1| rRNA biogenesis protein RRP5 [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1789

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 313/1355 (23%), Positives = 569/1355 (41%), Gaps = 148/1355 (10%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
            D+   FPRGG   LT  E  +I  E   +    E+G + K+ +     E  A +      
Sbjct: 59   DEEVAFPRGGASLLTPLEHKQIQIEATRDV-LFEQGANSKSVEAGVNGEPAAKKKHKLKK 117

Query: 109  SLFGDGISGKLPRYANK------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR 162
                     +      K      ++   I  G  + G V+++N+ D+ + LP  L G   
Sbjct: 118  VKGKGNKGSEAAEVEEKNVRIEGLSYTRIVPGSLVLGQVSQINDLDVALSLPNNLTGYVP 177

Query: 163  AADALDPILDNEIEA-------NEDNL------LPTIFHVGQLVSCIVLQLDDDKK--EI 207
                 D I +  IEA       +ED        L  +F +GQ +   V+   DD+     
Sbjct: 178  ITSISDKITE-RIEAIAAQEGEDEDETDLKDVNLKKLFSIGQYLRAYVVSTKDDEAAGSK 236

Query: 208  GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF--TGFLPRNN 265
             KR I LSLR       ++++ V     L A V S+EDHG I+  GLP     GF+  N 
Sbjct: 237  AKRHIELSLRPQQSNANIAVQNVVTNNTLMASVASVEDHGLIMDLGLPELGVKGFMSSNE 296

Query: 266  LAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS----IDLLV 320
            +     +  ++ G +    +  ++ + K V LS DP  ++   +K+ K +S    ID  +
Sbjct: 297  VGYGVALSSIEEGAVFLCTILGLNSSGKTVKLSVDPQKIAN--SKNPKYLSDAPTIDAFL 354

Query: 321  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
            PG  V   V  I   G+    +     T D+ H        + +  Y    KV  R++  
Sbjct: 355  PGTAVEILVSEITLRGISGKVMGSLDVTADLMHSGAGASGKDLEKKYKIGSKVKGRLICT 414

Query: 381  DPTSRA--VGLTLNPYLLHN-----------RAPPSHVKVGDIYDQSKVVRVDRGLGLLL 427
             P S+   +G++L  ++L             + P   + +    ++ KV +V+ G+GL +
Sbjct: 415  FPNSQPAKLGVSLLDHVLSLSSLQGLLNSELKNPLDILPLSSFVEEVKVKKVEPGMGLFV 474

Query: 428  DIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKAS 484
            D+    V+   +V IS V + ++  L +    +K GS  R R++G+  L+GL    L+ S
Sbjct: 475  DVGVKGVA--GFVHISRVKDGKIETLAETSGPFKTGSVHRGRLIGYNALDGLYIVSLEPS 532

Query: 485  AFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKP 539
                      D+  G VVKGKV  I V+  G    +V    G+  L P  HM++  +++P
Sbjct: 533  ILAQPFLRVEDLSIGEVVKGKVEKIVVNERGVGGLLVNLADGISGLVPEAHMADVHLLRP 592

Query: 540  GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
             KKFK G+ ++ RVL      ++I +T KKTLV S  A+  SY +    + + G I  I 
Sbjct: 593  EKKFKEGSTVMARVLSTDPGKRQIRLTLKKTLVNSDAALFVSYDDIKVGMQSPGTIVNIL 652

Query: 598  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---- 653
              G  V+FY  ++GF P +E+      +PS  + VGQVV   ++   P ++++ +S    
Sbjct: 653  STGAVVQFYGTIRGFLPVAEMSEAYIQDPSQHFLVGQVVNVHVVKVDPEAKKLIVSCKDP 712

Query: 654  --FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLE 709
              F +      +   +KLG +VS VV   + + + + +      + T+P   L D    +
Sbjct: 713  AAFGLAQQAAFKK--LKLGEVVSAVVTEKSNDNISLDLHG---IRATLPIGQLTDGSSQK 767

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQ--LPSDASHIHPNSVV 765
            +A+ +K  I+ G     L+VL    +   ++L+ K +L+  A+   L      +  + VV
Sbjct: 768  NASALKK-IRVGQTLTDLVVLGKYENKRLIILTNKPNLVKDAKAKLLLRSFEDVKEDKVV 826

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ--------------RADLSKTYYVGQS 811
            HG+V NI  T  FV+F G LTG  P+ K  +                +  +++  +  + 
Sbjct: 827  HGFVKNITLTAVFVQFAGGLTGLLPKVKLPEAAIRLPDFGMKKFQTLQVKITRVDHGQRQ 886

Query: 812  VRSNILD------VNSETGRITLSLKQSCCSSTDASF-----MQEHFLLEEKIAMLQSSK 860
             + +++D      V  ET   + S+ Q   +  D +      + +  L + KI+ ++ ++
Sbjct: 887  FQLSMVDAASKERVEPETPVSSGSINQEAVNPIDTTLTCLDDLTQGRLTKAKISSVKETQ 946

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
             N           +   I+G++  S  F          D +  I   +    +     ++
Sbjct: 947  IN---------VQLADNIQGRIDVSQIF----------DSFDDIKDRKRPVRSFSPKQIL 987

Query: 921  QAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
               +L +  AK  R + +S ++     F  +          ++  A   + V  +  A V
Sbjct: 988  NVRVLGIHDAKNHRFLPISHRSGKTMVFELSAKPSDQNDDPKEPLALDKVKVGSSWVAYV 1047

Query: 979  EIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
              +KE Y+ ++L P     I    +S D +  K  +  F  G ++   V  +     AG 
Sbjct: 1048 NNIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHV----DAGN 1103

Query: 1037 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
              L L A+S    S S       S   G +V  ++T+     + ++        +++T++
Sbjct: 1104 NRLDLSALS----SQSSGPITLKSLSKGMVVTGKVTKSTERHIMVQLSDNLSAPVNLTDL 1159

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS--EIGSKL 1154
             DD S      +S  +I +     +    + P+ K      LS +PS +  S  E+    
Sbjct: 1160 ADDYSEADPTKYSKGEIVRVCVVDV----DLPNKK----IRLSTRPSRVLSSSLEVKDPE 1211

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            + E   +     V G++  +      + +   + A + + D     S ++++Q  + + +
Sbjct: 1212 ISEISQLKPNDIVRGFIKNITEAGLFINLGGKVDALVKVAD--LSDSFIKDWQSEYEVDQ 1269

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
             V G V+ I+K +  +++ L+       D  + +S  +++     G IV G+I K+    
Sbjct: 1270 LVKGKVIGIDKSRGNVQMSLKASALD-KDYVLPMSFADLRP----GQIVTGKIRKVEEFG 1324

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
              +V+    +L G  H T++ +  V D  S Y  G
Sbjct: 1325 AFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAG 1359



 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 216/440 (49%), Gaps = 49/440 (11%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G L +A+I+ +K  ++ ++      GRI ++++ D   ++ +      +F   Q +  R+
Sbjct: 932  GRLTKAKISSVKETQINVQLADNIQGRIDVSQIFDSFDDIKDRKRPVRSFSPKQILNVRV 991

Query: 1122 IAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            +   +  + +         K+ ++ELS KPS     +    L  ++  V +G     YV 
Sbjct: 992  LGIHDAKNHRFLPISHRSGKTMVFELSAKPSDQN-DDPKEPLALDK--VKVGSSWVAYVN 1048

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             +  E+  + +S +++ ++  L+ + + S+L+  +  F IG A+  HV  ++     L L
Sbjct: 1049 NIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHVDAGNNRLDL 1108

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
                 Q   S   + + +      + +G +V G+++K  S    ++VQ+  +L   V+ T
Sbjct: 1109 SALSSQ---SSGPITLKS------LSKGMVVTGKVTK--STERHIMVQLSDNLSAPVNLT 1157

Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1352
            +L +          D  + DP + Y +G+ V+  V+++    +    + LS R S     
Sbjct: 1158 DLAD----------DYSEADP-TKYSKGEIVRVCVVDVDLPNK---KIRLSTRPS----- 1198

Query: 1353 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1412
                  LS+ ++     + +I  L PN IV+G++KN+T  G FI L  K+DA V +++LS
Sbjct: 1199 ----RVLSSSLEVKDPEISEISQLKPNDIVRGFIKNITEAGLFINLGGKVDALVKVADLS 1254

Query: 1413 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1472
            D +++  + E+ + +LV G+V+ ++     V+++LK S +         + ++L  G IV
Sbjct: 1255 DSFIKDWQSEYEVDQLVKGKVIGIDKSRGNVQMSLKAS-ALDKDYVLPMSFADLRPGQIV 1313

Query: 1473 IGQIKRVESYGLFITIENTN 1492
             G+I++VE +G FI I+ TN
Sbjct: 1314 TGKIRKVEEFGAFIVIDGTN 1333



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 105/489 (21%), Positives = 201/489 (41%), Gaps = 69/489 (14%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAEL 549
            D+  G + K K+ +V      VQ    ++    +  +   F+ +K    P + F     L
Sbjct: 928  DLTQGRLTKAKISSVKETQINVQLADNIQGRIDVSQIFDSFDDIKDRKRPVRSFSPKQIL 987

Query: 550  VFRVLGVKSKR----ITVTHK--KTLVKSKLAILSSYAE------ATDRL-ITHGWIT-- 594
              RVLG+   +    + ++H+  KT+V    A  S   +      A D++ +   W+   
Sbjct: 988  NVRVLGIHDAKNHRFLPISHRSGKTMVFELSAKPSDQNDDPKEPLALDKVKVGSSWVAYV 1047

Query: 595  -KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH--VGQVVKCRIMSSIPASRRIN 651
              I++   +V     V+G  P  EL  D     +   H  +G  +K  +      + R++
Sbjct: 1048 NNIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHVDAGNNRLD 1107

Query: 652  LSFMMKPTR--VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
            LS +   +   ++   L K G +V+G V   T   ++V  ++   S   +    LAD   
Sbjct: 1108 LSALSSQSSGPITLKSLSK-GMVVTGKVTKSTERHIMVQ-LSDNLS-APVNLTDLADDYS 1164

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQ---QLP--SDASHIHPN 762
             A   K       E  ++ V+D +  N  + LS + S + S+    + P  S+ S + PN
Sbjct: 1165 EADPTKY---SKGEIVRVCVVDVDLPNKKIRLSTRPSRVLSSSLEVKDPEISEISQLKPN 1221

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             +V G++ NI E G F+   G++      +   D    D    Y V Q V+  ++ ++  
Sbjct: 1222 DIVRGFIKNITEAGLFINLGGKVDALVKVADLSDSFIKDWQSEYEVDQLVKGKVIGIDKS 1281

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             G + +SLK        AS + + ++L    A L+                 G ++ GK+
Sbjct: 1282 RGNVQMSLK--------ASALDKDYVLPMSFADLRP----------------GQIVTGKI 1317

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 935
             +  +FG  +  +  +++ G     Q+A   V       ++G  ++A I+ +   +R + 
Sbjct: 1318 RKVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVFLDAEKRQIS 1377

Query: 936  LSLKTVFID 944
            L LK  + +
Sbjct: 1378 LGLKASYFE 1386



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 157/350 (44%), Gaps = 36/350 (10%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE------NSGIDVKPGL 278
            L+L+ V+ G    AYV +I++  Y+     P+  G +P   L+E      N       G 
Sbjct: 1032 LALDKVKVGSSWVAYVNNIKEE-YVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGS 1090

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             ++  V+ +D     + LS+     S  +T  LK +S      GM+V+ +V    E  +M
Sbjct: 1091 AIKVHVKHVDAGNNRLDLSALSSQSSGPIT--LKSLS-----KGMVVTGKVTKSTERHIM 1143

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            +      +  V++  L + +   +    Y++ + V   ++ VD  ++ + L+  P    +
Sbjct: 1144 VQLSDNLSAPVNLTDLADDYSEAD-PTKYSKGEIVRVCVVDVDLPNKKIRLSTRP----S 1198

Query: 399  RAPPSHVKVGD--IYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVAEEEV 450
            R   S ++V D  I + S++   D   G + +I    +         A V ++D+++  +
Sbjct: 1199 RVLSSSLEVKDPEISEISQLKPNDIVRGFIKNITEAGLFINLGGKVDALVKVADLSDSFI 1258

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVI 507
            +  + +Y+    V+ +++G     G     LKASA +    L  + +D++PG +V GK+ 
Sbjct: 1259 KDWQSEYEVDQLVKGKVIGIDKSRGNVQMSLKASALDKDYVLPMSFADLRPGQIVTGKIR 1318

Query: 508  AVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVG----AELVF 551
             V+ FGA +   G   +  LC    M++  +      ++ G    A++VF
Sbjct: 1319 KVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVF 1368



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 158/408 (38%), Gaps = 96/408 (23%)

Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
            G  G +HI+ V D K   +      FK G     R+I   N  D     L+ +S++PS+L
Sbjct: 480  GVAGFVHISRVKDGKIETLAETSGPFKTGSVHRGRLIG-YNALDG----LYIVSLEPSIL 534

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILDSAYEPSE 1202
                  ++      D+SIG+ V G V K V NE  +  +  +L   +   + ++      
Sbjct: 535  ------AQPFLRVEDLSIGEVVKGKVEKIVVNERGVGGLLVNLADGISGLVPEAHMADVH 588

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1262
            L   +++F  G  V   VLS +  K+ +RL L+        KT  + N +   F+   DI
Sbjct: 589  LLRPEKKFKEGSTVMARVLSTDPGKRQIRLTLK--------KT--LVNSDAALFVSYDDI 638

Query: 1263 -VG----GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY--------DEG 1309
             VG    G I  ILS   G VVQ    + G +   E+    + DP   +           
Sbjct: 639  KVGMQSPGTIVNILS--TGAVVQFYGTIRGFLPVAEMSEAYIQDPSQHFLVGQVVNVHVV 696

Query: 1310 QFDP------LSGYD--------EGQFVKCKVLEISRTV---RGTFHVELSL---RSSL- 1348
            + DP      +S  D        +  F K K+ E+   V   +   ++ L L   R++L 
Sbjct: 697  KVDPEAKKLIVSCKDPAAFGLAQQAAFKKLKLGEVVSAVVTEKSNDNISLDLHGIRATLP 756

Query: 1349 -----DGMSSTNSSDLS--------TDVDTPGKH-----------------------LEK 1372
                 DG S  N+S L         TD+   GK+                       L  
Sbjct: 757  IGQLTDGSSQKNASALKKIRVGQTLTDLVVLGKYENKRLIILTNKPNLVKDAKAKLLLRS 816

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
             ED+  + +V G+VKN+T    F+  +  L   +    L +  +  P+
Sbjct: 817  FEDVKEDKVVHGFVKNITLTAVFVQFAGGLTGLLPKVKLPEAAIRLPD 864



 Score = 41.2 bits (95), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 31/192 (16%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            G++V G++ KI+    GVGGL+V +   + G V    + ++ +             P   
Sbjct: 547  GEVVKGKVEKIVVNERGVGGLLVNLADGISGLVPEAHMADVHL-----------LRPEKK 595

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
            + EG  V  +VL    T  G   + L+L+ +L              V++        +D+
Sbjct: 596  FKEGSTVMARVLS---TDPGKRQIRLTLKKTL--------------VNSDAALFVSYDDI 638

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
               M   G + N+ S G  +     +   + ++ +S+ Y++ P + F +G++V   V+ V
Sbjct: 639  KVGMQSPGTIVNILSTGAVVQFYGTIRGFLPVAEMSEAYIQDPSQHFLVGQVVNVHVVKV 698

Query: 1437 EPLSKRVEVTLK 1448
            +P +K++ V+ K
Sbjct: 699  DPEAKKLIVSCK 710


>gi|361124585|gb|EHK96666.1| putative rRNA biogenesis protein rrp5 [Glarea lozoyensis 74030]
          Length = 1525

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 175/638 (27%), Positives = 305/638 (47%), Gaps = 56/638 (8%)

Query: 238 AYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVV 294
           A V S+EDHG ++  GL   T  GF+    + + + +  V+ G +   +V  +    K+V
Sbjct: 2   AAVSSVEDHGLVMDLGLEDTTVKGFMSSKEIGKGTELSKVQEGAVYLSMVTGLSSNGKIV 61

Query: 295 YLSSDPDTVSKCVTKDLKGIS----IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
            LS+D   ++   TK L  +S    ID  +PG  V   V  +   GV+   +     T+D
Sbjct: 62  KLSADTQKIAN--TKKLSYLSEAPTIDAFMPGTAVEILVTDVTARGVIGKVMGMVDVTID 119

Query: 351 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS-----------RAVGLTLNPYLLH-- 397
           + H     P  + +  Y    K+  R++   PT+             +G++L   +++  
Sbjct: 120 LIHSGAALPGKDLEKKYKLGSKIKGRVICNFPTADPPKLGVSLLDHVIGMSLQQAVVNGE 179

Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK-- 455
            + P   + +  I ++  V +V+ G GL +D+    +S   +V IS V + ++  L +  
Sbjct: 180 KKQPLDVLPLSAILEEVVVRKVEAGHGLFVDVGVKGLS--GFVHISRVKDGKIETLSEVS 237

Query: 456 -KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDS- 511
             YK GS  R R++G+  ++G     L+AS  E       D+K G  VKG +  I V++ 
Sbjct: 238 GAYKLGSTHRGRVIGYNSIDGTFLLSLEASILEQPFLNIEDLKIGETVKGTIEKIVVNAK 297

Query: 512 --FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-SKR-ITVTHKK 567
              G +V    G+  L P  HM++ +++ P KKFK G  +  RVL    SKR + +T KK
Sbjct: 298 GVGGVLVNLAEGISGLVPEAHMADVKLLHPEKKFKEGMAVTCRVLSTDPSKRQVRLTLKK 357

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           +LV S+ A   SY +    + + G I  + + G  V+FY  ++GF P +E+      +P+
Sbjct: 358 SLVNSEAAPFVSYEDIEVGMQSPGTIINVLQAGAVVQFYGSIRGFLPVAEMSEAYIQDPT 417

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR---VSEDDL--VKLGSLVSGVVDVVTP 682
             + +GQVV   +    P ++++ +S    PT      +  L  +K+G +VS +V   + 
Sbjct: 418 QHFRIGQVVNVHVTKVDPETQKMTVS-CKDPTTFGLAQQTALKNLKVGEIVSALVTEKSS 476

Query: 683 NAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDN-ESSNL-L 738
           + + + +  +   + T+   HL D    ++A+  K  I+ G +   L VL+  ES  L L
Sbjct: 477 DDISLEIEGQSL-RATLSLSHLTDGSSSKNASAFKK-IRVGQKLTDLAVLEKLESKRLVL 534

Query: 739 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
           L+ K SLI +++   L      +  + +VHG+V NI  T  F++F G LTG  P+SK   
Sbjct: 535 LTNKPSLIKASKDRTLLRSIEDVKVDKIVHGFVKNITPTAAFIQFGGGLTGLLPKSKL-- 592

Query: 797 GQRADLSKTYYVG----QSVRSNILDVNSETGRITLSL 830
               D++     G    Q+ +  ++ V+ E G   LS+
Sbjct: 593 --PKDMASLDDFGLKKFQAAQVKVISVDREQGTFVLSM 628



 Score =  166 bits (420), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 221/1008 (21%), Positives = 428/1008 (42%), Gaps = 157/1008 (15%)

Query: 544  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
            K+G  L+  V+G+  ++  V  +K      L + +   E   R +  G       HG FV
Sbjct: 157  KLGVSLLDHVIGMSLQQAVVNGEKKQPLDVLPLSAILEEVVVRKVEAG-------HGLFV 209

Query: 604  RF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFM 655
                 G+ GF   S +    ++   E S  Y +G   + R++  +SI  +  ++L  S +
Sbjct: 210  DVGVKGLSGFVHISRVKDGKIETLSEVSGAYKLGSTHRGRVIGYNSIDGTFLLSLEASIL 269

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEH 710
             +P    ED  +K+G  V G ++ +  NA     V+  +A+G S G +P  H+AD  L H
Sbjct: 270  EQPFLNIED--LKIGETVKGTIEKIVVNAKGVGGVLVNLAEGIS-GLVPEAHMADVKLLH 326

Query: 711  ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
                +   K G     ++L  D     + L+ K SL+NS          I       G +
Sbjct: 327  P---EKKFKEGMAVTCRVLSTDPSKRQVRLTLKKSLVNSEAAPFVSYEDIEVGMQSPGTI 383

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             N+++ G  V+F G + GF P ++  +    D ++ + +GQ V  ++  V+ ET ++T+S
Sbjct: 384  INVLQAGAVVQFYGSIRGFLPVAEMSEAYIQDPTQHFRIGQVVNVHVTKVDPETQKMTVS 443

Query: 830  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
             K               F L ++ A+              +   +G ++   V E +   
Sbjct: 444  CKDPTT-----------FGLAQQTAL--------------KNLKVGEIVSALVTEKSSDD 478

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLK 939
            + +  E  S        H   G++ ++ S  +           A+L+  +++RLV L+ K
Sbjct: 479  ISLEIEGQSLRATLSLSHLTDGSSSKNASAFKKIRVGQKLTDLAVLEKLESKRLVLLTNK 538

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS--------LP 991
               I          +A K +    + +D+ V + V+  V+ +      +         LP
Sbjct: 539  PSLI----------KASKDRTLLRSIEDVKVDKIVHGFVKNITPTAAFIQFGGGLTGLLP 588

Query: 992  EYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 1051
            +       AS+ D+  +KF   Q          V  +      G  +L +  +SE   +S
Sbjct: 589  KSKLPKDMASLDDFGLKKFQAAQ----------VKVISVDREQGTFVLSMTDMSEDSKAS 638

Query: 1052 SKRAKKKS-----------------SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             +    ++                 ++D+G L +A +  +K  ++ ++      GRI ++
Sbjct: 639  QQPVAGEALTGDVVNPVDESITSMQNFDIGRLTKARVVSVKDTQINVQLADNVQGRIDVS 698

Query: 1095 EVNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPS 1143
            +V D    + +       F   Q +  R++   +  + +         KS ++ELS KPS
Sbjct: 699  QVFDSWEEIKDRKKPLKKFSAKQILDVRVLGMHDARNHRFLPISHRVGKSVVFELSAKPS 758

Query: 1144 MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
               V      L  ++  V  G     ++  + +  A + +S +++ ++ +++ + + S L
Sbjct: 759  D-QVETTQEPLTLDK--VKKGSAWIAFINNITDNCAWVNLSPNVRGRISLMEMSDDVSRL 815

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
            ++ +  F +G A+   V +++     L L         S ++       +QT + EG ++
Sbjct: 816  KDVESNFPVGSAIRARVTNVDASNNRLDL---------SARSQPAEKLTLQT-LSEGMVL 865

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G++++  S    ++V++   L G VH  +L +          D  Q DP + Y +   V
Sbjct: 866  PGKVTR--STERQILVELADGLAGPVHLPDLAD----------DFSQADP-TKYTKNDIV 912

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            +  V+ +    +      LS R S          D S  V+ P      I  L  N +V+
Sbjct: 913  RVCVVSVDLPNK---RFRLSTRPS-------RVLDSSLPVEDP--EFTSISQLKANDVVR 960

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G+VK+V   G F+ +   L A V +S+LSD Y++  + EF + +LV G++  V+    ++
Sbjct: 961  GFVKSVAKMGLFVNIGGNLTAFVRVSDLSDSYIKDWQSEFEVDQLVKGKITQVDANLNQI 1020

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +++LK+S       + I   ++L VG IV G+I++VE +G+FI ++N+
Sbjct: 1021 QMSLKSSVLDKNYVAPI-TFADLSVGQIVTGKIRKVEDFGVFIVLDNS 1067



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 187/840 (22%), Positives = 327/840 (38%), Gaps = 135/840 (16%)

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG----LSLETVQEGMVLTAYVKS 242
            F  G  V+C VL  D       KR++ L+L+ SL+       +S E ++ GM     + +
Sbjct: 331  FKEGMAVTCRVLSTDP-----SKRQVRLTLKKSLVNSEAAPFVSYEDIEVGMQSPGTIIN 385

Query: 243  IEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQGVVRSID-RTRKVVYLS 297
            +   G ++ F   S  GFLP   ++E    D     + G ++   V  +D  T+K+    
Sbjct: 386  VLQAGAVVQF-YGSIRGFLPVAEMSEAYIQDPTQHFRIGQVVNVHVTKVDPETQKMTVSC 444

Query: 298  SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL-TYFTGTVDIFHLQN 356
             DP T        LK + +     G +VS  V     + + L         T+ + HL +
Sbjct: 445  KDPTTFGLAQQTALKNLKV-----GEIVSALVTEKSSDDISLEIEGQSLRATLSLSHLTD 499

Query: 357  TFPTTN---WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ 413
               + N   +K      K  +  +L    + R V LT  P L+  +A      +  I D 
Sbjct: 500  GSSSKNASAFKKIRVGQKLTDLAVLEKLESKRLVLLTNKPSLI--KASKDRTLLRSIED- 556

Query: 414  SKVVRVDRGL-GLLLDIPSTPVSTPAYVTI----------SDVAEEEVRKLEKKYKEGSC 462
               V+VD+ + G + +I  TP  T A++            S + ++     +   K+   
Sbjct: 557  ---VKVDKIVHGFVKNI--TP--TAAFIQFGGGLTGLLPKSKLPKDMASLDDFGLKKFQA 609

Query: 463  VRVRILGFRHLEGLATGIL---------KASA--FEGLVFTHSDVKP------------- 498
             +V+++     +G  T +L         KAS     G   T   V P             
Sbjct: 610  AQVKVISVDREQG--TFVLSMTDMSEDSKASQQPVAGEALTGDVVNPVDESITSMQNFDI 667

Query: 499  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAELVFRV 553
            G + K +V++V      VQ    V+    +  +   +E +K    P KKF     L  RV
Sbjct: 668  GRLTKARVVSVKDTQINVQLADNVQGRIDVSQVFDSWEEIKDRKKPLKKFSAKQILDVRV 727

Query: 554  LGVKSKR----ITVTHK--KTLVKSKLAILSSYAEATDRLIT-------HGWIT---KIE 597
            LG+   R    + ++H+  K++V    A  S   E T   +T         WI     I 
Sbjct: 728  LGMHDARNHRFLPISHRVGKSVVFELSAKPSDQVETTQEPLTLDKVKKGSAWIAFINNIT 787

Query: 598  KHGCFVRFYNGVQGFAPRSELGLDPG--CEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +  +V     V+G     E+  D     +  S + VG  ++ R+ +   ++ R++LS  
Sbjct: 788  DNCAWVNLSPNVRGRISLMEMSDDVSRLKDVESNFPVGSAIRARVTNVDASNNRLDLSAR 847

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
             +P        +  G ++ G V   T   ++V  +A G + G +    LAD    A   K
Sbjct: 848  SQPAEKLTLQTLSEGMVLPGKVTRSTERQILVE-LADGLA-GPVHLPDLADDFSQADPTK 905

Query: 716  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYV 769
               K       ++ +D  +    LS + S +  +  LP      +  S +  N VV G+V
Sbjct: 906  -YTKNDIVRVCVVSVDLPNKRFRLSTRPSRVLDSS-LPVEDPEFTSISQLKANDVVRGFV 963

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             ++ + G FV   G LT F   S   D    D    + V Q V+  I  V++   +I +S
Sbjct: 964  KSVAKMGLFVNIGGNLTAFVRVSDLSDSYIKDWQSEFEVDQLVKGKITQVDANLNQIQMS 1023

Query: 830  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
            LK        +S + ++++     A L                 +G ++ GK+ +  DFG
Sbjct: 1024 LK--------SSVLDKNYVAPITFADLS----------------VGQIVTGKIRKVEDFG 1059

Query: 890  VVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVF 942
            V +  +   +V G     ++A   V       E G  ++A ++ +   ++ + L LK  +
Sbjct: 1060 VFIVLDNSMNVSGLCHQSEMADKRVHDVKKLYEEGDAVKAKVIKIDSEKKRISLGLKAKY 1119



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 159/369 (43%), Gaps = 58/369 (15%)

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELSIKPSM 1144
             GRI + E++DD S + +++ SNF +G  + AR+    A +N+ D+  S   + + K ++
Sbjct: 800  RGRISLMEMSDDVSRL-KDVESNFPVGSAIRARVTNVDASNNRLDL--SARSQPAEKLTL 856

Query: 1145 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1204
             T+SE              G  + G V +      L+ ++  L   + + D A + S  Q
Sbjct: 857  QTLSE--------------GMVLPGKVTRSTERQILVELADGLAGPVHLPDLADDFS--Q 900

Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDI 1262
                ++     V   V+S++   K  RL  RP +  + D ++ + +    +   +   D+
Sbjct: 901  ADPTKYTKNDIVRVCVVSVDLPNKRFRLSTRPSR--VLDSSLPVEDPEFTSISQLKANDV 958

Query: 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
            V G +  +     GL V IG +L   V  ++L +  + D  S ++  Q            
Sbjct: 959  VRGFVKSVAKM--GLFVNIGGNLTAFVRVSDLSDSYIKDWQSEFEVDQL----------- 1005

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1382
            VK K+ ++   +     +++SL+SS+          L  +   P        DLS   IV
Sbjct: 1006 VKGKITQVDANLN---QIQMSLKSSV----------LDKNYVAP----ITFADLSVGQIV 1048

Query: 1383 QGYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
             G ++ V   G FI+L   ++   L   S ++D  V   +K +  G  V  +V+ ++   
Sbjct: 1049 TGKIRKVEDFGVFIVLDNSMNVSGLCHQSEMADKRVHDVKKLYEEGDAVKAKVIKIDSEK 1108

Query: 1441 KRVEVTLKT 1449
            KR+ + LK 
Sbjct: 1109 KRISLGLKA 1117


>gi|429860182|gb|ELA34927.1| rRNA biogenesis protein [Colletotrichum gloeosporioides Nara gc5]
          Length = 1773

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 230/880 (26%), Positives = 390/880 (44%), Gaps = 64/880 (7%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
           +A S K+ + S +D P  ++          ++   A +A  ++    D+ P+FPRGGG  
Sbjct: 18  SAKSTKASRPSKRDTPTKDRKQDGGKDKKSREEAPAPKAPTVSRLLKDEEPLFPRGGGSV 77

Query: 62  LTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG-DGISGKLP 120
           LT  E+ +I  E  A+    +       K K KK +R+  +   D  +    D  + K+ 
Sbjct: 78  LTPLEQKQITMEAKADAAKEDAEFDVNEKSKAKKEKRRKAKEAKDTDAKHARDEDAVKI- 136

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEA 177
                +  K +  G  + G ++ ++   L I LP  L G   +A  +D ++  LD  +E 
Sbjct: 137 ---EGLNFKRLVKGSLVLGQISHIDPVQLTIALPNNLTGHVSIASISDTINAKLDGAMET 193

Query: 178 NEDNL----------LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLS 226
           +++            L ++F +GQ V   VL   DD      KR+I LSLR      GLS
Sbjct: 194 SDNESEDEDEEDDVDLKSMFRIGQYVRAYVLSTSDDTAGGKAKRRIELSLRPVDTNTGLS 253

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID---VKPGLLLQG 282
            + V   + L A + S++DHGY ++ G+     GFL +  +    G+D   ++PG +   
Sbjct: 254 SDDVVANVTLMASIASVQDHGYEMNLGIDGDLKGFLSKKEVG--PGMDEASLRPGAVCLC 311

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
           VV+ +  T  VV LS+DP  +           +I+  +PG +    +  + + G+    L
Sbjct: 312 VVKGV--TGIVVQLSADPQKLGNTSNVASNAPTINSFLPGTLADVLLTEVTKRGLQGKLL 369

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH--- 397
            +   T D+ H        +    Y    +V ARI+   P ++   +G++L P++ +   
Sbjct: 370 GHLPVTADLIHSGVGPDGVDLDAKYKVGGRVKARIICNFPAAKEPKLGISLLPHINNLQS 429

Query: 398 --------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
                    +AP   + +    +   V +V+  +GL +D     +S   +V IS V + +
Sbjct: 430 KSSGKGSRAKAPLDLLPIAAFAETCTVRQVEPDIGLYVDTGVPGIS--GFVHISRVKDGK 487

Query: 450 VRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           V  L +    +K G+  R R++G+  L+G+     + S  +       DV  G +V GK+
Sbjct: 488 VDALYESSGPFKVGTTHRGRVVGYSPLDGMFLLSFEKSVLDQAFIRLEDVPIGQIVSGKI 547

Query: 507 ----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 560
               I  +   G IV+    +       H ++ ++  P KKF+ G E+  RVL V+ ++ 
Sbjct: 548 EKMIIGENGVSGLIVKLAENIAGYVHESHFADVKLQHPEKKFREGMEVKARVLSVRLRKH 607

Query: 561 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            + +T KK+LV S   I+ +Y +    + T G IT +   G  + F+  V+GF P S++ 
Sbjct: 608 QLRLTLKKSLVSSDSTIIKNYDDVEVDMQTPGTITSVSADGARLEFFGDVRGFLPVSQMS 667

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVS 674
                +P   +  GQVV   ++S +P  RR+ +S    P+    D       +K+G LVS
Sbjct: 668 EAYIKDPREHFRAGQVVSVHVLSVVPEERRLVVS-CKDPSAFGLDKQAALKALKIGDLVS 726

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-N 732
             V   T + V V +   G  K  I   HL D     T      I+ G     L+VLD N
Sbjct: 727 AKVSQKTEDEVFVDLEESGL-KAIIRVGHLTDKSASKTEAALKRIRVGQTLTDLMVLDKN 785

Query: 733 ESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
           E    ++L+ K S I +++  +L S    +   +V   YV  I     +V+F G LT   
Sbjct: 786 ERRRAVILTQKPSFIEASKNGKLLSSYDDVTVGAVAPAYVREIGPFAVYVQFGGNLTAIL 845

Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           P+SK     +   S      QSV   I+  N E  RI ++
Sbjct: 846 PKSKLDREVQEKASFGMRKHQSVEVKIVSSNPEQKRIIVA 885



 Score =  124 bits (311), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 199/928 (21%), Positives = 393/928 (42%), Gaps = 122/928 (13%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRV 661
            G+ GF   S +    +D   E S  + VG   + R++   P      LSF   ++    +
Sbjct: 473  GISGFVHISRVKDGKVDALYESSGPFKVGTTHRGRVVGYSPLDGMFLLSFEKSVLDQAFI 532

Query: 662  SEDDLVKLGSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSV 717
              +D V +G +VSG ++  ++  N V   ++    +  G +   H AD  L+H    +  
Sbjct: 533  RLED-VPIGQIVSGKIEKMIIGENGVSGLIVKLAENIAGYVHESHFADVKLQHP---EKK 588

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G E   ++L +      L L+ K SL++S   +  +   +  +    G + ++   G
Sbjct: 589  FREGMEVKARVLSVRLRKHQLRLTLKKSLVSSDSTIIKNYDDVEVDMQTPGTITSVSADG 648

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              + F G + GF P S+  +    D  + +  GQ V  ++L V  E  R+ +S K     
Sbjct: 649  ARLEFFGDVRGFLPVSQMSEAYIKDPREHFRAGQVVSVHVLSVVPEERRLVVSCKDPSA- 707

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
                      F L+++ A+              +   IG ++  KV +  +  V V  EE
Sbjct: 708  ----------FGLDKQAAL--------------KALKIGDLVSAKVSQKTEDEVFVDLEE 743

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA- 955
                 G     ++   T +S S  +AA+  +   + L DL    + +D+    N  R+A 
Sbjct: 744  S----GLKAIIRVGHLTDKSASKTEAALKRIRVGQTLTDL----MVLDK----NERRRAV 791

Query: 956  --QKKKRKREASK---------DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 1004
               +K    EASK         D+ V     A V  +    + +       +I   S  D
Sbjct: 792  ILTQKPSFIEASKNGKLLSSYDDVTVGAVAPAYVREIGPFAVYVQFGGNLTAILPKSKLD 851

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE--------TSSSKRAK 1056
               Q+         QSV   +++  S+    R+++   +  E E         S  ++ +
Sbjct: 852  REVQEKASFGMRKHQSVEVKIVS--SNPEQKRIIVAPSSAVEPEKVPAAAALNSVDEKIR 909

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIG 1114
              +   +G+ + A++  +K  ++ +K      GRI +++  D+  ++V+        K+ 
Sbjct: 910  NVNDVALGTTMDAKVASVKATQINVKVADNIQGRIDVSQFFDNWEDIVDKKIPLKKIKVD 969

Query: 1115 QTVTARIIAKSNKPDMK--------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1166
            + +  R I   +  + +           + EL+ K S +   E+    L     + +G  
Sbjct: 970  EIIRVRAIGIHDSKNYRFLPFSHRSTHSIIELTAKKSDVEAKEVD---LLSYDKLKVGDS 1026

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
               +V         + +S  ++ ++ I++ + + S     ++ F +G A+   V+S++ E
Sbjct: 1027 HIAFVNNHGKNCLWVNLSPTVRGRISIMEVSDDLSHAGNLEKYFPVGSALKVKVVSVDAE 1086

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K  L L  R      S  T +I  D+++    +  I+ GR++K+      L++++   + 
Sbjct: 1087 KGHLDLSSR-----SSSGTSEIKWDSLK----KNQILPGRVTKV--NDRQLMIKLSDAVS 1135

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
            G VH  +L   C       YDE        +++G+ ++  V+E+ ++ +    + LS R 
Sbjct: 1136 GPVHLVDL---C-----DDYDEAN---TLKFNKGEIIRVSVVEVDKSNK---RLRLSTRP 1181

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
            S    S++  +D         + +  +  L+   IV+G+VKNV   G F+ L   + A V
Sbjct: 1182 SRILSSTSPVAD---------REITSLAQLTSGDIVRGFVKNVADNGVFVQLGGSISALV 1232

Query: 1407 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1466
             ++NLSD Y++  +  F + +LV GRV+S++    ++E++LK S         I    ++
Sbjct: 1233 KIANLSDRYIKDWKGSFQVDQLVKGRVISIDTAINKIELSLKASVVENDYTPPI-TWKDI 1291

Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLV 1494
                IV G++++VE +G FI ++N+  V
Sbjct: 1292 KESQIVTGKVRKVEEFGAFIVVDNSTNV 1319



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 115/265 (43%), Gaps = 29/265 (10%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            I  G +TK+      ++  + V G     +L  D     +  ++ G++++  ++    ++
Sbjct: 1113 ILPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCDDYDEANTLKFNKGEIIRVSVVEVDKSN 1172

Query: 648  RRINLSFMMKPTR-------VSEDDLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYS 695
            +R+ LS   +P+R       V++ ++  L     G +V G V  V  N V  +V   G  
Sbjct: 1173 KRLRLS--TRPSRILSSTSPVADREITSLAQLTSGDIVRGFVKNVADNGV--FVQLGGSI 1228

Query: 696  KGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQ 750
               +   +L+D       +K   K  ++ DQL     + +D   + + LS K S++ +  
Sbjct: 1229 SALVKIANLSDRY-----IKD-WKGSFQVDQLVKGRVISIDTAINKIELSLKASVVENDY 1282

Query: 751  QLPSDASHIHPNSVVHGYVCNIIETGCF--VRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
              P     I  + +V G V  + E G F  V     ++G   RS+  +    D  K Y  
Sbjct: 1283 TPPITWKDIKESQIVTGKVRKVEEFGAFIVVDNSTNVSGLCHRSEMAEKPVEDARKLYNE 1342

Query: 809  GQSVRSNILDVNSETGRITLSLKQS 833
            G  V++ ++ ++ E  RIT SLK S
Sbjct: 1343 GDVVKAKVISIDDEKRRITFSLKPS 1367



 Score = 44.3 bits (103), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 51/294 (17%)

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD--KSNVVENLFSNFKIGQTVTARIIA 1123
            ++   +T++   +L +K      G +H+ ++ DD  ++N ++     F  G+ +   ++ 
Sbjct: 1113 ILPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCDDYDEANTLK-----FNKGEIIRVSVVE 1167

Query: 1124 --KSNKPDMKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
              KSNK          LS +PS +  + S +  + +     ++ G  V G+V  V +   
Sbjct: 1168 VDKSNK-------RLRLSTRPSRILSSTSPVADREITSLAQLTSGDIVRGFVKNVADNGV 1220

Query: 1180 LLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
             + +   + A + I  L   Y    +++++  F + + V G V+SI+     + L L   
Sbjct: 1221 FVQLGGSISALVKIANLSDRY----IKDWKGSFQVDQLVKGRVISIDTAINKIELSL--- 1273

Query: 1238 QDGISDKTVDISNDNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                  K   + ND         I E  IV G++ K+      +VV    ++ G  H +E
Sbjct: 1274 ------KASVVENDYTPPITWKDIKESQIVTGKVRKVEEFGAFIVVDNSTNVSGLCHRSE 1327

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
            +    V D    Y+EG             VK KV+ I    R    +  SL+ S
Sbjct: 1328 MAEKPVEDARKLYNEGDV-----------VKAKVISIDDEKR---RITFSLKPS 1367



 Score = 43.9 bits (102), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 44/277 (15%)

Query: 137  LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 196
            L G V +VN++ L+I L   + G     D  D       + +E N L   F+ G+++   
Sbjct: 1114 LPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCD-------DYDEANTLK--FNKGEIIRVS 1164

Query: 197  VLQLDDDKKEIGKRKIWLSLRLSLLYKGLS---------LETVQEGMVLTAYVKSIEDHG 247
            V+++D   K     ++ LS R S +    S         L  +  G ++  +VK++ D+G
Sbjct: 1165 VVEVDKSNK-----RLRLSTRPSRILSSTSPVADREITSLAQLTSGDIVRGFVKNVADNG 1219

Query: 248  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQGVVRSIDRTRKVVYLSSDPDTV 303
              +  G  S +  +   NL++    D K       L++G V SID     + LS     V
Sbjct: 1220 VFVQLG-GSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDTAINKIELSLKASVV 1278

Query: 304  SKCVT-----KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
                T     KD+K   I        V+ +V+ + E G  +  +   T    + H     
Sbjct: 1279 ENDYTPPITWKDIKESQI--------VTGKVRKVEEFGAFI-VVDNSTNVSGLCHRSEMA 1329

Query: 359  --PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              P  + +  YN+   V A+++ +D   R +  +L P
Sbjct: 1330 EKPVEDARKLYNEGDVVKAKVISIDDEKRRITFSLKP 1366



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 16/266 (6%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            I  D L    ++  RV  + +  +M+      +G V +  L + +   N    +N+ + +
Sbjct: 1103 IKWDSLKKNQILPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCDDYDEANTLK-FNKGEII 1161

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
               ++ VD +++ + L+  P  + +   P  V   +I   +++   D   G + ++    
Sbjct: 1162 RVSVVEVDKSNKRLRLSTRPSRILSSTSP--VADREITSLAQLTSGDIVRGFVKNVADNG 1219

Query: 434  V------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            V      S  A V I+++++  ++  +  ++    V+ R++            LKAS  E
Sbjct: 1220 VFVQLGGSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDTAINKIELSLKASVVE 1279

Query: 488  GLV---FTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKK 542
                   T  D+K   +V GKV  V+ FGA  +V     V  LC    M+E  +    K 
Sbjct: 1280 NDYTPPITWKDIKESQIVTGKVRKVEEFGAFIVVDNSTNVSGLCHRSEMAEKPVEDARKL 1339

Query: 543  FKVGAELVFRVLGV--KSKRITVTHK 566
            +  G  +  +V+ +  + +RIT + K
Sbjct: 1340 YNEGDVVKAKVISIDDEKRRITFSLK 1365


>gi|336273586|ref|XP_003351547.1| hypothetical protein SMAC_00089 [Sordaria macrospora k-hell]
 gi|380095827|emb|CCC05873.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1776

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 230/888 (25%), Positives = 373/888 (42%), Gaps = 95/888 (10%)

Query: 4   SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLT 63
           S+R S++  S D P     +K     S K    A  A   +    ++ P+FPRGG   LT
Sbjct: 25  STRPSKRPKSNDAPNKKAGAKKPGPKSDKPAPPAPTAPANSSLLKEEEPMFPRGGASVLT 84

Query: 64  QRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPR 121
             E  +I   A  DA FE             KK    K  +         GD    K   
Sbjct: 85  PLEYKQIQVQARSDALFEE-----QSGKADAKKAGGEKEGKQKKSKKRSKGDDTPAKPDE 139

Query: 122 YANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN 178
            A K+     K +  G  + G V  +N  D+ + LP  + G      A+   L   +EA+
Sbjct: 140 DAVKVESLNFKRLVKGSLVLGSVCAINALDIAVALPNNIIGHVPIT-AISAPLTKRLEAS 198

Query: 179 --------------EDNLLPTIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSL 220
                          D  L +IF +GQ V   V+   D+         KR I LSL+ SL
Sbjct: 199 AGDDDAEESDDENENDVDLESIFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSL 258

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPG 277
              G++ + V     + A + S+EDHGY++   +      GFL R  + ++   + ++PG
Sbjct: 259 ANTGMAEQDVVVNSTVMAAIASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPG 318

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            +L  +V    +  K+V LS+  +T+           +ID  +PG      V  +  +G+
Sbjct: 319 AVLLCMVTKSAKG-KIVQLSTLGETIGNVENVPAAATTIDTFLPGTAADVLVSEVSNHGI 377

Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-------- 389
           +   +     T D+ H        + ++ Y    ++ AR++   PT++   L        
Sbjct: 378 VGKIMGSLDVTADLVHSGAGPDGVDLEDTYKVGSRLKARVICNFPTAKNPKLGISVLKHV 437

Query: 390 -TLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD 444
            +L P        P      +    I ++  V +V+  +GL +D           V + D
Sbjct: 438 TSLKPKTASKDEQPVVPLQALPHSTIVEKCTVKQVEPEIGLYVD-----------VGVED 486

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           V           YK GS    R++G+   +G+    L+ S  E       D+  G VV G
Sbjct: 487 VG---------PYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSG 537

Query: 505 KVI-----AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VK 557
            V      A    G IV+   G+  L P  H ++  +  P KKF+ G ++  RVL     
Sbjct: 538 VVEKMVLNAAGVGGLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAA 597

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           S++I +T KKTLV S L  + +Y E T      G I  + +HG  V+FY  ++GF P SE
Sbjct: 598 SRQIRLTLKKTLVNSDLPAIQTYDEITVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSE 657

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLV 673
           +      +P   + VGQ V   ++S  P + ++ +S         E  L    +++G +V
Sbjct: 658 MSEAYIHDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKDPAAFGLEKQLALKKLQIGDVV 717

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVL 730
           S  V   T + V V  +A    K  +P  HL D  +  +  +S +K         +L++L
Sbjct: 718 SAKVTQKTDDDVFVE-LADSSLKAILPVAHLTD--KSVSKTQSALKKIHVNQTLSELVIL 774

Query: 731 D-NES-SNLLLSAKYSLINSAQQ---LPS-DASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           + NE+  +++LS K  L+ + ++   L S D + +     V GYV NI  T  FV+F G+
Sbjct: 775 EKNEARRSIILSQKPILVKATKEGKFLTSLDGARV--GEEVAGYVRNITATAVFVQFGGK 832

Query: 785 LTGFAPRS--KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           LT   P+S     D  + D     +  QS+   I  VN+E  R+ +++
Sbjct: 833 LTALLPKSMIPKEDQDKPDFG--MFKSQSITVKITSVNNELNRLVVAV 878



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 218/928 (23%), Positives = 415/928 (44%), Gaps = 129/928 (13%)

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTRVSED 664
            V+   P   L +D G E    Y VG V   R++  ++      I+L  S + +P    ED
Sbjct: 469  VKQVEPEIGLYVDVGVEDVGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIED 528

Query: 665  DLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIK 719
              + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +   +
Sbjct: 529  --IPVGAVVSGVVEKMVLNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---EKKFR 582

Query: 720  PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETG 776
             G +   ++L  D  S  + L+ K +L+NS   LP+  ++  I       G + N+++ G
Sbjct: 583  EGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQTYDEITVGQQALGTIINVLQHG 640

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K     
Sbjct: 641  AIVQFYGRLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKDPAA- 699

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
                      F LE+++A+              +   IG V+  KV +  D  V V   +
Sbjct: 700  ----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFVELAD 735

Query: 897  HSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLKTVFIDRF 946
             S        H    +  ++ S ++            IL+  +A R + LS K + +   
Sbjct: 736  SSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLSELVILEKNEARRSIILSQKPILVKAT 795

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDY 1005
            +E          +   E +   G  + + A    V+    L   LP+        S+   
Sbjct: 796  KEGKFLTSLDGARVGEEVA---GYVRNITATAVFVQFGGKLTALLPK--------SMIPK 844

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA----KK 1057
              Q  P       QS+   + ++  ++   RL++ +   +E     +T   K A    + 
Sbjct: 845  EDQDKPDFGMFKSQSITVKITSV--NNELNRLVVAVPGATEQVKRVDTKGEKLANPVDES 902

Query: 1058 KSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFK 1112
             +S D   +G L +A +  +K  ++ ++      GRI +++V D+   +   +     F+
Sbjct: 903  ITSLDDISIGKLTKARVVSVKDTQVNVQLADNIQGRIDVSQVYDNWEQIKDTKKPLKKFQ 962

Query: 1113 IGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
              Q V  R++    A++++  P   +S   + ELS KPS +        L F+  ++ +G
Sbjct: 963  PKQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEALSFD--NLKVG 1020

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
                G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   V+S++
Sbjct: 1021 SSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRVVSVD 1080

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             E K L L  R    G  D   +++ D     I +  I+ G+++K+      ++V++   
Sbjct: 1081 AESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKVTKVDER--QVIVKLSET 1129

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            L G VH  +L +         Y+E   +P + + + + V+  V+E+ ++ +    + LS 
Sbjct: 1130 LAGPVHKVDLAD--------DYEEA--NP-AKFAKNEIVRVAVVEVDKSNK---RIRLST 1175

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            R S           L++ +    K + +   L    IV+G+VKNV+ KG F+ L   + A
Sbjct: 1176 RPS---------RILNSSLPVKDKEIVQHTKLEVGEIVRGFVKNVSDKGLFVTLGGNVTA 1226

Query: 1405 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1464
             V + NLSD Y++  +++F + +LV GR++SV   + R+E++LK S         +  +S
Sbjct: 1227 FVQIKNLSDAYLKYWKEQFQVDQLVKGRIVSVA--NGRIEMSLKPS-VVDKDYVPLTTIS 1283

Query: 1465 NLHVGDIVIGQIKRVESYGLFITIENTN 1492
            +L  G  + G++++VE +G FI I+ ++
Sbjct: 1284 DLKEGQTITGRVRKVEEFGAFIDIDGSD 1311



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 190/461 (41%), Gaps = 73/461 (15%)

Query: 1009 KFPQKQFLNGQSVIATVMA---------LPSSSTAGRLLLLLKA-ISETETSSSKRAKKK 1058
            K P K+F   Q V   V+          LP S  +   +L L A  S+ +  +S  A   
Sbjct: 955  KKPLKKFQPKQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEALSF 1014

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
             +  VGS     +  +    L +       GR++  E +DD S ++ NL  NF IG  + 
Sbjct: 1015 DNLKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVS-LLTNLAKNFPIGSALR 1073

Query: 1119 ARII---AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
             R++   A+S + D               L+    GS+       ++    + G V KVD
Sbjct: 1074 VRVVSVDAESKRLD---------------LSARSPGSEDELTWDKIAQDVILVGKVTKVD 1118

Query: 1176 NEWALLTISRHLKAQLFILDSA--YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
                ++ +S  L   +  +D A  YE +   +F +     + V   V+ ++K  K +RL 
Sbjct: 1119 ERQVIVKLSETLAGPVHKVDLADDYEEANPAKFAK----NEIVRVAVVEVDKSNKRIRLS 1174

Query: 1234 LRPFQDGISDKTVDISNDNM--QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
             RP +  I + ++ + +  +   T +  G+IV G +  +     GL V +G ++     F
Sbjct: 1175 TRPSR--ILNSSLPVKDKEIVQHTKLEVGEIVRGFVKNVSDK--GLFVTLGGNVTA---F 1227

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
             ++KN+  SD    Y + QF         Q VK +++ ++        +E+SL+ S+   
Sbjct: 1228 VQIKNL--SDAYLKYWKEQFQV------DQLVKGRIVSVANG-----RIEMSLKPSV--- 1271

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLS 1409
                       VD     L  I DL     + G V+ V   G FI +  S  L      S
Sbjct: 1272 -----------VDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSDNLSGLCHRS 1320

Query: 1410 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
             +SD  V+   K +  G  V  +VL V+  +KR+ + LK S
Sbjct: 1321 EMSDKAVKDARKLYEEGDKVKAKVLKVDATAKRINLGLKPS 1361



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 166/785 (21%), Positives = 305/785 (38%), Gaps = 120/785 (15%)

Query: 127  TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTI 186
            T   I+ G +  G +  V +   ++   G LRG    ++  +  + +  E          
Sbjct: 619  TYDEITVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIHDPKEH--------- 669

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL---LYKGLSLETVQEGMVLTAYVKSI 243
            F VGQ VS  V+  D D       K+ +S +      L K L+L+ +Q G V++A V   
Sbjct: 670  FRVGQTVSIYVISFDPDAA-----KLIVSCKDPAAFGLEKQLALKKLQIGDVVSAKVTQK 724

Query: 244  EDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVY 295
             D    +     S    LP  +L + S    +  L        L + V+   +  R+ + 
Sbjct: 725  TDDDVFVELADSSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLSELVILEKNEARRSII 784

Query: 296  LSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            LS  P  V    TK+ K + S+D    G  V   V   + N    +    F G +     
Sbjct: 785  LSQKPILVK--ATKEGKFLTSLD----GARVGEEVAGYVRNITATAVFVQFGGKLTALLP 838

Query: 355  QNTFPTTNW-KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ 413
            ++  P  +  K D+   K   ++ + V  TS  V   LN  ++        VK  D   +
Sbjct: 839  KSMIPKEDQDKPDFGMFK---SQSITVKITS--VNNELNRLVVAVPGATEQVKRVDTKGE 893

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE------------------------EE 449
                 VD  +  L DI    ++    V++ D                           ++
Sbjct: 894  KLANPVDESITSLDDISIGKLTKARVVSVKDTQVNVQLADNIQGRIDVSQVYDNWEQIKD 953

Query: 450  VRKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
             +K  KK++    V VR+LG    R+   L      + +   L    SDVK G     + 
Sbjct: 954  TKKPLKKFQPKQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEG--ASSEA 1011

Query: 507  IAVDSFGAIVQFPGGVKA---------LCPL--PHMSEFE-------IVKPGKKFKVGAE 548
            ++ D+      + G V           L P     ++  E       +    K F +G+ 
Sbjct: 1012 LSFDNLKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSA 1071

Query: 549  LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
            L  RV+ V  +SKR+ ++ +    + +L    ++ +    +I  G +TK+++    V+  
Sbjct: 1072 LRVRVVSVDAESKRLDLSARSPGSEDEL----TWDKIAQDVILVGKVTKVDERQVIVKLS 1127

Query: 607  NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
              + G   + +L  D      + +   ++V+  ++    +++RI LS   +P+R+    L
Sbjct: 1128 ETLAGPVHKVDLADDYEEANPAKFAKNEIVRVAVVEVDKSNKRIRLS--TRPSRILNSSL 1185

Query: 667  ------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATV 713
                        +++G +V G V  V+   +  +V   G     +  ++L+D +L++   
Sbjct: 1186 PVKDKEIVQHTKLEVGEIVRGFVKNVSDKGL--FVTLGGNVTAFVQIKNLSDAYLKY--- 1240

Query: 714  MKSVIKPGYEFDQLL---VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
                 K  ++ DQL+   ++   +  + +S K S+++      +  S +     + G V 
Sbjct: 1241 ----WKEQFQVDQLVKGRIVSVANGRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVR 1296

Query: 771  NIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
             + E G F+   G   L+G   RS+  D    D  K Y  G  V++ +L V++   RI L
Sbjct: 1297 KVEEFGAFIDIDGSDNLSGLCHRSEMSDKAVKDARKLYEEGDKVKAKVLKVDATAKRINL 1356

Query: 829  SLKQS 833
             LK S
Sbjct: 1357 GLKPS 1361



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            +  H+ ++ G +V+G V  V   G  V   G V A   + ++S+  +    ++F+V   +
Sbjct: 1192 IVQHTKLEVGEIVRGFVKNVSDKGLFVTLGGNVTAFVQIKNLSDAYLKYWKEQFQVDQLV 1251

Query: 550  VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YN 607
              R++ V + RI ++ K ++V      L++ ++  +     G + K+E+ G F+     +
Sbjct: 1252 KGRIVSVANGRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSD 1311

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
             + G   RSE+      +   +Y  G  VK +++     ++RINL   +KP+   E
Sbjct: 1312 NLSGLCHRSEMSDKAVKDARKLYEEGDKVKAKVLKVDATAKRINLG--LKPSYFGE 1365


>gi|451851669|gb|EMD64967.1| hypothetical protein COCSADRAFT_189966 [Cochliobolus sativus
           ND90Pr]
          Length = 1795

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 205/763 (26%), Positives = 344/763 (45%), Gaps = 66/763 (8%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE--- 179
           ++ K +S G  + G + +++ +DLV+ LP  L G   L   +D L+  L+  ++ +E   
Sbjct: 146 LSYKKLSPGTIVLGQITDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKEDESDK 205

Query: 180 ----------DNLLPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
                     D  L  +F VGQ L +CI     +  K   ++++ LS+   L+  GL+  
Sbjct: 206 EDGSDKDDFEDADLRDLFSVGQYLRACITATSGEGAK--ARKRLELSIEPKLVNTGLTKR 263

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENS-GIDVKPGLLLQGVVR 285
            +    ++ A V S EDHG ++  GL   T  GFLP+  L  N     V+ G +   ++ 
Sbjct: 264 KIPVNGMIQASVVSNEDHGLVMDLGLNDATLKGFLPKGELGPNLLHSKVQEGAVFMCLIT 323

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            ++   ++V LS+D  T +  +TK     +  +ID+ +PG  V   V     N +    L
Sbjct: 324 GLNSDGRIVKLSAD-HTKAGNLTKGNTLTEAPTIDVFLPGTAVDLLVTENTPNTITGKIL 382

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL---- 396
                T D +H   T   T+    +    KV AR+LF  P S  R V ++L  ++L    
Sbjct: 383 GLIDATADAYHSGATEKATDVSQKHKIGSKVKARVLFTCPGSDPRKVSVSLLDHVLSLST 442

Query: 397 ------HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
                   R PP   + +  I + +KVV+V    G   D+    V    +  IS +++++
Sbjct: 443 RMSGKPKERKPPIDLLPISTIVESAKVVKVAPSQGAFFDLGIKDVV--GFAHISRLSDDK 500

Query: 450 VRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           V  L ++   +K  S  + RI+G+  L+GL    L+    +       D+K G VVKGKV
Sbjct: 501 VDILSEEAGAFKLDSKHKARIVGYNALDGLFQLSLEKKVIDQPFLRIEDIKAGEVVKGKV 560

Query: 507 --IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 560
             +  D  GA   +V    G+  L P  H+++  +  P +KF+ G  +  RVL  +  R 
Sbjct: 561 HKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREGLPVTVRVLYTEPARH 620

Query: 561 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            I +T KK+LV S++   ++Y   ++     G +  + ++G  V+FYN V+ + P +E+ 
Sbjct: 621 QIHLTLKKSLVNSEVKPWTNYKMISEGATGPGILVNVRRNGATVQFYNRVRAWLPVAEMS 680

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVS 674
                + +  +HVGQVV  R++ S+ A  R  L     P+ V  +     + +  G +V 
Sbjct: 681 EAFIHDATRHFHVGQVVNVRVL-SVDAKERQLLVSCKDPSAVDTNKEAAFNALNPGGIVK 739

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVL-- 730
           G V V   +      I  G  KG +   HL D  E   +  MK  I+ G   + L+VL  
Sbjct: 740 GTV-VEKSDESATLDIGNGV-KGILRLGHLTDGSEKKDISTMKK-IRVGGTLEDLVVLAK 796

Query: 731 DNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
             +S    +S K SL   AQ  +L      +     VHG+V  I+    FV     ++G 
Sbjct: 797 HGKSKTATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILSDKVFVELGNGISGA 856

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +S+  +   A         QS+ + +  V+   G   LS+K
Sbjct: 857 LFKSQLPEDMAAAPDFGLRKDQSITARVTHVDVGKGLFWLSMK 899



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 211/441 (47%), Gaps = 47/441 (10%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G+L+   +  +K  +L ++      GRI ++E+ ++  ++ +     ++FK+  T+ AR+
Sbjct: 938  GTLMTVRVRSVKDTQLNVELAANVPGRISVSELFENWDSIPDKKRPTAHFKMNDTIQARV 997

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV-SIGQRVTG-----YVYK 1173
            + + +  + +  FL   S   +  T  E+ +K   +  E DV S+ + +TG     ++  
Sbjct: 998  LGRHDPRNFR--FLPITSRSSNKTTTYEMTAKTEEIKSEADVLSLDKVITGSSYIAFINN 1055

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            + +    + IS +++ ++   D   +  +L + ++ F +G A+   V +++     L L 
Sbjct: 1056 IADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGSALKVRVKTVDAANGKLDLT 1115

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                   ++ K++ + +      +  G ++  R++K+      +VVQI   +   +   +
Sbjct: 1116 A---ASTVTGKSLSLQD------LKVGHVLPARVTKLHDA--SIVVQINESIAAPIFMEQ 1164

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353
            L +         YD+ Q           FV   VL +         +++ + +   G+S+
Sbjct: 1165 LAD--------DYDKAQ--------PKNFVAGDVLRVCV-------IDIDIPNKKLGLSA 1201

Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
              S  LS+ +      +     L  N +V+G+VK++ + G ++ L   ++A V +S+LSD
Sbjct: 1202 RPSRVLSSSLPVKDPEITDRTQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSD 1261

Query: 1414 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
             Y++  +  F + +LV G+V+S +   +  +++LKTS  +T    E    + L +G IV 
Sbjct: 1262 EYIKDWKSVFHVDQLVTGKVISNKEDQRNPQLSLKTSIIKT-DYVEPLEFATLKIGQIVS 1320

Query: 1474 GQIKRVESYGLFITIENTNLV 1494
             +++ VE YG+F+ ++N+N V
Sbjct: 1321 AKVRHVEDYGVFLIVDNSNNV 1341



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 179/447 (40%), Gaps = 84/447 (18%)

Query: 538  KPGKKFKVGAELVFRVLG-------------VKSKRITVTHKKTL----VKSKLAILSSY 580
            +P   FK+   +  RVLG              +S   T T++ T     +KS+  +LS  
Sbjct: 982  RPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS-- 1039

Query: 581  AEATDRLITH----GWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQ 634
                D++IT      +I  I     +V     ++G     +L   L+   +    + VG 
Sbjct: 1040 ---LDKVITGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGS 1096

Query: 635  VVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--- 689
             +K R+ +   A+ +++L+     T   +S  DL K+G ++   V  +   ++VV +   
Sbjct: 1097 ALKVRVKTVDAANGKLDLTAASTVTGKSLSLQDL-KVGHVLPARVTKLHDASIVVQINES 1155

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLIN 747
            IA       I  E LAD  + A     V     +  ++ V+D +  N  L LSA+ S + 
Sbjct: 1156 IA-----APIFMEQLADDYDKAQPKNFV---AGDVLRVCVIDIDIPNKKLGLSARPSRVL 1207

Query: 748  SAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            S+  LP      +D + +  N VV G+V +I   G +VR    +  +   S   D    D
Sbjct: 1208 SSS-LPVKDPEITDRTQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKD 1266

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
                ++V Q V   ++    +     LSLK         S ++  ++   + A L+    
Sbjct: 1267 WKSVFHVDQLVTGKVISNKEDQRNPQLSLK--------TSIIKTDYVEPLEFATLK---- 1314

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------ 915
                        IG ++  KV    D+GV +  +  ++V G     Q+A A V+      
Sbjct: 1315 ------------IGQIVSAKVRHVEDYGVFLIVDNSNNVSGLCHISQIADAVVDKEKLKD 1362

Query: 916  ---SGSVIQAAILDVAKAERLVDLSLK 939
                  V++A ++ V    R V  +LK
Sbjct: 1363 MYKKDDVVKAKVIKVDPKSRKVSFTLK 1389



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 26/191 (13%)

Query: 667 VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 720
           +K G +V G V     D     AV+V+ ++ G + G +P  HLAD  L+H         P
Sbjct: 550 IKAGEVVKGKVHKLFADKTGATAVLVH-LSDGIT-GLVPEMHLADVRLQH---------P 598

Query: 721 GYEFDQLL-----VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
             +F + L     VL  E +   + L+ K SL+NS  +  ++   I   +   G + N+ 
Sbjct: 599 ERKFREGLPVTVRVLYTEPARHQIHLTLKKSLVNSEVKPWTNYKMISEGATGPGILVNVR 658

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G  V+F  R+  + P ++  +    D ++ ++VGQ V   +L V+++  ++ +S K  
Sbjct: 659 RNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHVGQVVNVRVLSVDAKERQLLVSCKDP 718

Query: 834 CCSST--DASF 842
               T  +A+F
Sbjct: 719 SAVDTNKEAAF 729



 Score = 44.3 bits (103), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 106/476 (22%), Positives = 191/476 (40%), Gaps = 65/476 (13%)

Query: 1008 QKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET--SSSKRAKKKSSYDV-- 1063
            +K P   F    ++ A V+          L +  ++ ++T T   ++K  + KS  DV  
Sbjct: 980  KKRPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS 1039

Query: 1064 ------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
                  GS   A I  I    + +       GRI   ++ DD   +  ++  NF +G  +
Sbjct: 1040 LDKVITGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKL-SDVEKNFPVGSAL 1098

Query: 1118 TARII---AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
              R+    A + K D+  +         S +T    G  L  +  D+ +G  +   V K+
Sbjct: 1099 KVRVKTVDAANGKLDLTAA---------STVT----GKSLSLQ--DLKVGHVLPARVTKL 1143

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
             +   ++ I+  + A +F+   A +  + Q   + F  G  +   V+ I+   K L L  
Sbjct: 1144 HDASIVVQINESIAAPIFMEQLADDYDKAQ--PKNFVAGDVLRVCVIDIDIPNKKLGLSA 1201

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
            RP +   S   V       +T +    +V G +  I +   G+ V++GPH+   V  + L
Sbjct: 1202 RPSRVLSSSLPVKDPEITDRTQLKVNQVVRGFVKHIANN--GVYVRLGPHVEAYVRVSHL 1259

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
                        DE   D  S +   Q V  KV+      R   + +LSL++S+      
Sbjct: 1260 S-----------DEYIKDWKSVFHVDQLVTGKVISNKEDQR---NPQLSLKTSI------ 1299

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLS 1412
                + TD   P   LE    L    IV   V++V   G F+++  S  +     +S ++
Sbjct: 1300 ----IKTDYVEP---LE-FATLKIGQIVSAKVRHVEDYGVFLIVDNSNNVSGLCHISQIA 1351

Query: 1413 DGYV--ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1466
            D  V  E  +  +    +V  +V+ V+P S++V  TLK S  +   + E   + ++
Sbjct: 1352 DAVVDKEKLKDMYKKDDVVKAKVIKVDPKSRKVSFTLKYSQVKGEGKGEDEEMEDV 1407


>gi|119482079|ref|XP_001261068.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
           181]
 gi|119409222|gb|EAW19171.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
           181]
          Length = 1819

 Score =  189 bits (481), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 222/909 (24%), Positives = 387/909 (42%), Gaps = 84/909 (9%)

Query: 3   ASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSL 62
           A +R+ QK+    G +     K+Q K    +    ++  +L +  DD+ P FPRGGG  L
Sbjct: 14  AVTRQPQKRVRVGGAE---QGKDQKKQRTSESTSDLKPTELTVLHDDE-PSFPRGGGSVL 69

Query: 63  TQRERDEIHAEVDAEFEAVERGLHKK--------NKKKKKKTERKANETVDDLGSLFGDG 114
           T  E+ +IH +   +    ++G  K         + +  +  + + N T           
Sbjct: 70  TPLEKKQIHIQATKDVLFEQKGSKKSSDNFAVGDDDEDIEMNDAEDNATSTKQSRKRKTK 129

Query: 115 ISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
              +  + AN+        +  K I  G  + G V+ +N  D+ + LP  L G      A
Sbjct: 130 SKKRAEQEANEKQGVRIEGLNFKRIVPGSMVLGQVSSINAHDIGLSLPNNLTGYVPLT-A 188

Query: 167 LDPILDNEIEAN-EDN-----------------LLPTIFHVGQLVSCIVLQLDD---DKK 205
           +   L+ +IE    DN                  L   F++GQ +   V+ +     D  
Sbjct: 189 VSKKLEEKIEKILNDNDNEDSDAEEEDDDEDSLDLTDYFYLGQYLRASVVSVGSNAADAP 248

Query: 206 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPR 263
              K++I LS+       GLS   ++    + A V S+EDHG ++  G+      GF+ +
Sbjct: 249 SKNKKRIELSVDPRQTNAGLSKSDLEVNTAIQASVVSVEDHGLVMDLGIEGADVKGFMSK 308

Query: 264 NNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLV 320
             +   +    +K G +   +V   +    VV LS++  +              +I+  +
Sbjct: 309 KEIDPKTDYSSIKEGSVFLCMVTGQNANGSVVKLSANLQSAGSIKKSHYLSTASTINSFL 368

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G++   +     TVD+          +    +    K+  RI+  
Sbjct: 369 PGTAAEILLTEVSSSGLIGKIMGMLDATVDLVQSGGNSGKDDLTKKFQLGAKIKGRIVCT 428

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG ++  ++L        P +      +  I  ++KVV VD G+G+ + + S
Sbjct: 429 FPASEPFKVGFSILDHVLKFATEGHGPGTSEDAPAISAIIPEAKVVMVDPGMGVYVQMGS 488

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +   ++  S    R++G+   +GL     +    E 
Sbjct: 489 T--KHMGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYSSFDGLYLLSFERKVIEQ 546

Query: 489 LVFTHSDVKPGMVVKGKV-------IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                 DV  G VVKGK+         VD  G IV    G+  L P  H ++  +  P K
Sbjct: 547 PFLRLEDVTVGAVVKGKIEKLLIGPAGVD--GLIVTLADGITGLVPSMHFADTALQFPEK 604

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G  +  R+L V  + ++I +T KK+L+ S+ AI   Y +      + G I  I+ H
Sbjct: 605 KFREGLTITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPH 664

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G  V+FY  V+GF P SE+      +PS  +  GQVV    +S  PA  ++ +S    P+
Sbjct: 665 GAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVS-CKDPS 723

Query: 660 RVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             +E      + ++ G LV+G V   + + V++ +   G     +   H+ D  E   + 
Sbjct: 724 TFTETYKKAFEKIQPGLLVTGTVFEKSVDDVLLKLDEFGLI-ARLDLAHVVDGSESKQIS 782

Query: 715 K-SVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
             S I+ G + + LLVLD + +  L+  SA+ SL  +A+Q  LP+    I   + V G+V
Sbjct: 783 ALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEVTGFV 842

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            NI   G F+ FLG +TG  P+    D   +         Q V + +  ++++  R  LS
Sbjct: 843 RNITSDGLFIEFLGGITGLVPKRLLADENASKPDYGMVKSQLVTATVHSIDTDFQRFILS 902

Query: 830 LKQSCCSST 838
           +K S  +S 
Sbjct: 903 MKPSEATSA 911



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 204/867 (23%), Positives = 389/867 (44%), Gaps = 120/867 (13%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGAVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGL 610

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII-GSVIEGKVHES----NDFGVVVSFEE 896
            F + +    EKI                 G ++ G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYKKAFEKIQ---------------PGLLVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGSESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 956  QKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
             K+       +D+     V   V  I  +   +  L      +    ++D N  K P   
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGITGLVPKRLLADENASK-PDYG 878

Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK---------------- 1058
             +  Q V ATV ++ +     R +L +K  SE  ++  KR   K                
Sbjct: 879  MVKSQLVTATVHSIDTDFQ--RFILSMKP-SEATSAGPKRPAPKPTLSNDVVSNAVDESI 935

Query: 1059 ---SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKI 1113
               S +  G  V+ ++  +K  ++ ++      GRI ++EV D   ++ +       F+ 
Sbjct: 936  ESMSDFTFGRTVKCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRP 995

Query: 1114 GQTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
             Q ++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V IG
Sbjct: 996  KQIISARILGIHDARSHKFLPISHRSGKLPVFELSVKPSFLQAAN-PSPLNLEQ--VQIG 1052

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
                G++  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++
Sbjct: 1053 STWVGFINNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVD 1112

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   
Sbjct: 1113 TEKGRLDLTAKQGSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDT 1159

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            + G V+  +L +          D  + +P + Y +   ++  V+ + +  +    + LSL
Sbjct: 1160 VVGAVNLIDLAD----------DYSKANP-TVYHKNDVLRACVVGVDKANK---KISLSL 1205

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            R S           LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A
Sbjct: 1206 RPS---------KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTA 1256

Query: 1405 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1464
             V +S+LSD Y++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + 
Sbjct: 1257 YVRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPI-TMH 1315

Query: 1465 NLHVGDIVIGQIKRVESYGLFITIENT 1491
            +L VG +V G++++VE +G FI I+ +
Sbjct: 1316 DLKVGQVVTGKVRKVEEFGAFIVIDRS 1342



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 143/315 (45%), Gaps = 39/315 (12%)

Query: 541  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQG--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 659  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 705
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 706  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 761  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
               VV G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQVVTGKVRKVEEFGAFIVIDRSANVSGLCHRSEMADKRVDDARTLYEEGDVVKAKIIK 1378

Query: 819  VNSETGRITLSLKQS 833
            V+ E+G+I+ SLK S
Sbjct: 1379 VDRESGKISFSLKAS 1393



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 170/386 (44%), Gaps = 59/386 (15%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 992  FFRPKQIISARILGIHDARSHKFLPISHRSGKLPVFELSVKPSFLQAANPSPLNLEQVQI 1051

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1052 GSTWVGFINNVADDCLWINLS-PNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAA 1110

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + L++   + SK   +D   IS+ +++PG     RV  + E  V++       
Sbjct: 1111 VDTEKGRLDLTAKQGS-SKLSFED---ISVGMILPG-----RVTKVTEKQVIMQLSDTVV 1161

Query: 347  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            G V++  L + +    PT   KND      + A ++ VD  ++ + L+L P  + + + P
Sbjct: 1162 GAVNLIDLADDYSKANPTVYHKNDV-----LRACVVGVDKANKKISLSLRPSKVLSSSLP 1216

Query: 403  ---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                       +KV D+  +  V RV D GL + L    T     AYV +SD+++  +++
Sbjct: 1217 VQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGHDVT-----AYVRVSDLSDSYLKE 1270

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAV 509
             +  ++    V+ R+      +G     LK S  +       T  D+K G VV GKV  V
Sbjct: 1271 WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQVVTGKVRKV 1330

Query: 510  DSFGA--IVQFPGGVKALCPLPHMSE 533
            + FGA  ++     V  LC    M++
Sbjct: 1331 EEFGAFIVIDRSANVSGLCHRSEMAD 1356



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 167/401 (41%), Gaps = 54/401 (13%)

Query: 116  SGKLPRY-------------ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR 162
            SGKLP +              + + L+ +  G    G +  V +  L I L   +RG  R
Sbjct: 1021 SGKLPVFELSVKPSFLQAANPSPLNLEQVQIGSTWVGFINNVADDCLWINLSPNVRGRLR 1080

Query: 163  AADALDPI-LDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
              DA D + L  ++E +        F +G  +   V  +D +K            RL L 
Sbjct: 1081 FMDASDDLSLFADVEKH--------FPIGSALKVHVAAVDTEKG-----------RLDLT 1121

Query: 222  YK----GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 277
             K     LS E +  GM+L   V  + +   I+     +  G +   +LA++      P 
Sbjct: 1122 AKQGSSKLSFEDISVGMILPGRVTKVTEKQVIMQLS-DTVVGAVNLIDLADDYS-KANPT 1179

Query: 278  L-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQ 330
            +     +L+  V  +D+  K + LS  P  V  S    +D +  S+  L    +V   V+
Sbjct: 1180 VYHKNDVLRACVVGVDKANKKISLSLRPSKVLSSSLPVQDPEITSMKQLKVNDVVRGFVK 1239

Query: 331  SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLT 390
             + ++G+ ++     T  V +  L +++    WK+ +   + V  R+  VDP    + ++
Sbjct: 1240 RVADSGLFVTLGHDVTAYVRVSDLSDSY-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQMS 1298

Query: 391  LNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA 446
            L   +L    +AP +   +KVG +    KV +V+     ++   S  VS   +   S++A
Sbjct: 1299 LKESVLDPEYKAPITMHDLKVGQVV-TGKVRKVEEFGAFIVIDRSANVSGLCHR--SEMA 1355

Query: 447  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            ++ V      Y+EG  V+ +I+      G  +  LKAS F+
Sbjct: 1356 DKRVDDARTLYEEGDVVKAKIIKVDRESGKISFSLKASHFK 1396



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 181/444 (40%), Gaps = 86/444 (19%)

Query: 1068 QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            +A++  + P + + ++ G   H G +H++ + D K   +      F+I     AR++  S
Sbjct: 470  EAKVVMVDPGMGVYVQMGSTKHMGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYS 529

Query: 1126 NKPDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-----DNEW 1178
                   SF  L+ LS +  ++       +      DV++G  V G + K+       + 
Sbjct: 530  -------SFDGLYLLSFERKVI------EQPFLRLEDVTVGAVVKGKIEKLLIGPAGVDG 576

Query: 1179 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
             ++T++  +     +    +  + LQ  +++F  G  +T  +LS+N +K+ +RL L+   
Sbjct: 577  LIVTLADGITG--LVPSMHFADTALQFPEKKFREGLTITARILSVNLQKRQIRLTLKK-- 632

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-----LYGRVH-FT 1292
                     + N     +    DIV G  S       G +V I PH      YG V  F 
Sbjct: 633  --------SLLNSESAIWKDYQDIVPGSQSP------GTIVNIQPHGAVVQFYGSVRGFL 678

Query: 1293 ELKNICVSDPLSGYDEGQF-DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
                     P+S   E    DP   + +GQ V    L +   +               G 
Sbjct: 679  ---------PVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPAL---------------GK 714

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSN 1410
             + +  D ST  +T  K  EKI+   P ++V G V   +     + L    L A++ L++
Sbjct: 715  LAVSCKDPSTFTETYKKAFEKIQ---PGLLVTGTVFEKSVDDVLLKLDEFGLIARLDLAH 771

Query: 1411 LSDGYVESPEKEF-PIGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSEI-NN 1462
            + DG   S  K+   + K+  G+      VL ++   + ++V+ + S  + A Q  +   
Sbjct: 772  VVDG---SESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAK 828

Query: 1463 LSNLHVGDIVIGQIKRVESYGLFI 1486
              ++  G  V G ++ + S GLFI
Sbjct: 829  FEDIQEGAEVTGFVRNITSDGLFI 852


>gi|302891949|ref|XP_003044856.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
           77-13-4]
 gi|256725781|gb|EEU39143.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
           77-13-4]
          Length = 1773

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 214/837 (25%), Positives = 369/837 (44%), Gaps = 61/837 (7%)

Query: 7   KSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRE 66
           KS K + +  P   +  K+  K+  K+I++A     +     ++ P+FPRGGG+ LT  E
Sbjct: 17  KSAKNTKEARPSKKEGGKDA-KSKSKKIDEAPAKGPVVSLLKEEEPMFPRGGGNVLTPLE 75

Query: 67  RDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKI 126
           + +I  E  A+    E    + N   K + ++K    +             +       +
Sbjct: 76  QKQIQLEAKADALRDE----EFNTGGKAQKKKKRKTALKTDKKTEKKKEEEEDTVKVESL 131

Query: 127 TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL- 182
           + K +  G  + G V ++N  D+ + LP  L G   +   ++ L   L+ +    +D   
Sbjct: 132 SFKRLVKGSLVLGQVTKINNLDIEVALPNNLTGHVSIVAISEQLTERLEKDAAEKDDEED 191

Query: 183 --------LPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 233
                   L TIF +GQ V   V+  +D+     GKR+I LSLR S    GL  + V   
Sbjct: 192 DKDEDGIDLETIFSIGQYVRAYVVSTVDESGTGKGKRRIELSLRPSEANTGLEGDDVVIN 251

Query: 234 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRT 290
             + A + S++D G+++  G+ +   FL R+ +  +S  D   ++PG +    V S    
Sbjct: 252 TTVAASIVSVQDRGFVMDTGISNLGAFLSRSEI--DSSFDEQRLQPGAVFLCQVVSKGAN 309

Query: 291 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
            K+  LS     +           +I+  +PG +    V +    G     + +   T D
Sbjct: 310 GKIAQLSLQQKKLGNPKNVPADATTINTFLPGTIADVLVSNTDRRGFAGKIMGHLDVTAD 369

Query: 351 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH----------- 397
           + H        +  + Y    +V ARI+   P ++   +G++L P++             
Sbjct: 370 LIHSGVGPAGVSLDSTYKIGSRVKARIICNFPAAKEPKLGISLLPHITSLEQKRPTKTTD 429

Query: 398 -NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
             + P + + +  + ++  V  V+  +GL +DI    +S   +V IS V + +V  L + 
Sbjct: 430 AKKLPTTVLPISSLVEKCTVRHVEGEIGLFVDIGIPGLS--GFVHISRVKDGKVEALYES 487

Query: 457 ---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDS 511
              YK GS  + R++G+  ++GL     + S  E       DV  G V+ G+V  + VD 
Sbjct: 488 SGPYKVGSEHKGRVVGYNQVDGLFQISFEKSVLEQQYLRLEDVPIGAVITGEVERVLVDE 547

Query: 512 FGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHK 566
            G    I++   G+  L P  H+S+ ++  P KKF+ G ++  RVL       ++ +T K
Sbjct: 548 KGVSGLILKIAEGITGLVPEQHLSDIKLQNPEKKFRPGMKIKARVLSTNLVKNQMRLTLK 607

Query: 567 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           KTLV S+  I+ SY +A+  +   G I KI+  G  ++F+  V+GF P SE+      +P
Sbjct: 608 KTLVNSEAPIIKSYEDASVGMQVPGTIVKIQSSGAQIQFFGPVRGFLPISEMSEAYIKDP 667

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVT 681
              + VGQVV   ++   P S+++ +S    P+    D       +++G LVSG V   T
Sbjct: 668 HEHFRVGQVVSVHVLDVEPESQKLIVS-CKDPSAFGLDKQNALKKLQVGVLVSGKVSQKT 726

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLD-NESSN-LL 738
            + + V  +     K  +P   L D            I  G     L+VL+ NE    L+
Sbjct: 727 EDQIFVE-LDDAQLKAILPVGQLTDKSASKNQYAWKRISAGQTISNLMVLEKNEKRRVLI 785

Query: 739 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
           L+ K SLI +++   L           VV G+V NI  T  FV+F G +    P+S+
Sbjct: 786 LTQKPSLIKASEDRTLLKTFEDAKEGKVVAGFVQNITLTAVFVQFAGGVRALLPKSR 842



 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 237/1060 (22%), Positives = 463/1060 (43%), Gaps = 159/1060 (15%)

Query: 485  AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA--LCPLPHMSEFEIVKPGKK 542
             F G +  H DV   ++  G   A  S  +  +    VKA  +C  P           K+
Sbjct: 355  GFAGKIMGHLDVTADLIHSGVGPAGVSLDSTYKIGSRVKARIICNFPA---------AKE 405

Query: 543  FKVGAELVFRVLGVKSKRIT-VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
             K+G  L+  +  ++ KR T  T  K L  + L I S   + T R +  G I      G 
Sbjct: 406  PKLGISLLPHITSLEQKRPTKTTDAKKLPTTVLPISSLVEKCTVRHV-EGEI------GL 458

Query: 602  FVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--- 654
            FV     G+ GF   S +    ++   E S  Y VG   K R++          +SF   
Sbjct: 459  FVDIGIPGLSGFVHISRVKDGKVEALYESSGPYKVGSEHKGRVVGYNQVDGLFQISFEKS 518

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPN----AVVVYVIAKGYSKGTIPTEHLAD-HLE 709
            +++   +  +D V +G++++G V+ V  +    + ++  IA+G + G +P +HL+D  L+
Sbjct: 519  VLEQQYLRLED-VPIGAVITGEVERVLVDEKGVSGLILKIAEGIT-GLVPEQHLSDIKLQ 576

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
            +    +   +PG +    ++  N   N + L+ K +L+NS   +            V G 
Sbjct: 577  NP---EKKFRPGMKIKARVLSTNLVKNQMRLTLKKTLVNSEAPIIKSYEDASVGMQVPGT 633

Query: 769  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
            +  I  +G  ++F G + GF P S+  +    D  + + VGQ V  ++LDV  E+ ++ +
Sbjct: 634  IVKIQSSGAQIQFFGPVRGFLPISEMSEAYIKDPHEHFRVGQVVSVHVLDVEPESQKLIV 693

Query: 829  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
            S     C    A      F L+++ A+              +   +G ++ GKV +  + 
Sbjct: 694  S-----CKDPSA------FGLDKQNAL--------------KKLQVGVLVSGKVSQKTED 728

Query: 889  GVVVSFEEHSDVYGFI----------THHQLAGATVESGSVI-QAAILDVAKAERLVDLS 937
             + V  ++ + +   +          + +Q A   + +G  I    +L+  +  R++ L+
Sbjct: 729  QIFVELDD-AQLKAILPVGQLTDKSASKNQYAWKRISAGQTISNLMVLEKNEKRRVLILT 787

Query: 938  LKTVFIDRFREANSNRQAQKK-KRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNH 995
             K   I    +A+ +R   K  +  +E     G  Q +      V+    V +L P+   
Sbjct: 788  QKPSLI----KASEDRTLLKTFEDAKEGKVVAGFVQNITLTAVFVQFAGGVRALLPKSRL 843

Query: 996  SIGYASVSDYNTQKFPQKQFLNGQSV-IATVMALPSSSTAGRLLLLLKAISETETSSSKR 1054
                    D+   K         QS+ +  V  +P      R +++  A S+ +    K 
Sbjct: 844  PADVQEQPDFGMHKL--------QSIEVRIVSVIPDH----RRIVVAPADSDEDDVVKKE 891

Query: 1055 AKKKSS-----YDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVE--N 1106
                +S      + G++++A+IT +K  +L ++  G    GRI +++V D   ++ +  +
Sbjct: 892  KTDVASAPSDNLEFGTVIKAKITSVKDTQLNVQLAGNDVQGRIDVSQVFDTFEDIPDPKD 951

Query: 1107 LFSNFKIGQTVTARIIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLF 1156
                F   QT+T R+    N  D +  FL           EL+ KP+ +    +    L 
Sbjct: 952  PLDKFHKRQTLTVRVTGVHNAKDHR--FLPFSHRSAHSVVELTAKPNDIKADSLEPLQL- 1008

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
                + IG     YV     ++  + +S  ++ ++  ++++ + S+L + +  F +G A+
Sbjct: 1009 --SKLKIGDTHVAYVNNSSPQYLWVNLSPSVRGRISAMEASDDLSQLNDLEANFPVGSAL 1066

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               V++++ +   L L  R      +     +   NM        ++ GRI+K+      
Sbjct: 1067 KVRVIAVDPKNNKLDLSARSSSSSEAVSWSVLKQ-NM--------VLPGRITKV--NERQ 1115

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG--YDEGQFVKCKVLEISRTV 1334
            ++V++   + G VH  ++ +              FD ++   +++G  V+  ++E+  + 
Sbjct: 1116 ILVKLSELVSGAVHLPDMAD-------------NFDDVNTLKHNKGDLVRVSIVELDTSN 1162

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
            +    + LS+R S   MSST        +    K +  I  ++P  +V+G+VKNV+ KG 
Sbjct: 1163 K---KIRLSIRPSRI-MSST--------LTVKDKEISNISHVNPGDLVRGFVKNVSDKGL 1210

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DS 1452
            F++L  ++   V +SNLSD Y++  +  F + +LV  RV++V+  +KRVE++LK+S  D 
Sbjct: 1211 FVLLGGQVTGLVKISNLSDRYLKDWKDNFQVDQLVKARVIAVDREAKRVELSLKSSIVDQ 1270

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
                    N++     G +V G++++VE +G FI ++N++
Sbjct: 1271 DYTPPLTFNDIKE---GQVVTGKVRKVEDFGAFILVDNSD 1307



 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 33/237 (13%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            G ++ G + ++L    GV GL+++I   + G V    L +I + +P     E +F P   
Sbjct: 533  GAVITGEVERVLVDEKGVSGLILKIAEGITGLVPEQHLSDIKLQNP-----EKKFRP--- 584

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               G  +K +VL  +  V+    + L+L+ +L              V++    ++  ED 
Sbjct: 585  ---GMKIKARVLS-TNLVKN--QMRLTLKKTL--------------VNSEAPIIKSYEDA 624

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            S  M V G +  + S G  I     +   + +S +S+ Y++ P + F +G++V+  VL V
Sbjct: 625  SVGMQVPGTIVKIQSSGAQIQFFGPVRGFLPISEMSEAYIKDPHEHFRVGQVVSVHVLDV 684

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            EP S+++ V+ K  D       + N L  L VG +V G++ +     +F+ +++  L
Sbjct: 685  EPESQKLIVSCK--DPSAFGLDKQNALKKLQVGVLVSGKVSQKTEDQIFVELDDAQL 739


>gi|396476776|ref|XP_003840117.1| similar to rRNA biogenesis protein RRP5 [Leptosphaeria maculans
           JN3]
 gi|312216688|emb|CBX96638.1| similar to rRNA biogenesis protein RRP5 [Leptosphaeria maculans
           JN3]
          Length = 1787

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 233/908 (25%), Positives = 386/908 (42%), Gaps = 91/908 (10%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPP--------DDDVP 52
           M A  RK+++ S+   P   +   +  +++K+  +DA      A P          D+  
Sbjct: 1   MGAVKRKAEQPSA---PAKKEKGASGDRSAKRPKSDATSEHSAAKPKAEAPKSVFKDEEK 57

Query: 53  VFPRGGGHSLTQRERDEIH--AEVDAEFEAV-------------ERGLHKKNKKKKKKTE 97
           VFPRGG   LT  E  +I   A  D  FE               + G    N+  K+  +
Sbjct: 58  VFPRGGASVLTPLEHKQIQIRANQDVLFEQAGIKRTSGGDDDFSDMGSEDDNEAAKQSAK 117

Query: 98  RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
           +K  +          DG      R A  ++ K ++ G  + G+V EV ++D+V+ LP  L
Sbjct: 118 KKTFKKSKKSQE---DGDKEPTIR-AEGLSYKRLTPGTMVLGLVTEVTQQDIVLALPNNL 173

Query: 158 RG---LARAADALDPILDNEIEAN------------EDNLLPTIFHVGQLVSCIVLQLDD 202
            G   L   +D L+  L+  ++ +            ED  L  +F VGQ +   +   ++
Sbjct: 174 VGYVPLTAISDKLNERLEQLMKDDTDKEDGSDDGNFEDVDLQDMFSVGQYLRACITSTNE 233

Query: 203 DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGF 260
           +     KR + LS+   L+ KGL+   +    ++ A V S EDHG ++  GL      GF
Sbjct: 234 ETARARKR-LELSIDPKLVNKGLTKRKLPVNSMMQASVVSNEDHGLVMDLGLGDTKVKGF 292

Query: 261 LPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD--LKGISID 317
           LP+  L        V+ G +   +    +   ++V LS+D          +  +   +ID
Sbjct: 293 LPKGELGPKVQHAKVQEGAVFMCLATGTNPDGRIVKLSADHAKAGNLAKGNTLIDAPTID 352

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
           + +PG  V   +     + +    L     T D +H   T    +    Y    KV  RI
Sbjct: 353 VFLPGTAVDVLITDSTSSTITGKILGLIDCTADAYHSGATERGADVSQKYKLGSKVKGRI 412

Query: 378 LFVDPTS--RAVGLTLNPYLL----------HNRAPPSHV-KVGDIYDQSKVVRVDRGLG 424
           LF  P S  R VG++L  +++            R PP  +  V  I + +KVV+V   LG
Sbjct: 413 LFTCPDSEPRKVGVSLLDHVVSLSTRMSGKPKERKPPLELLPVSTIIENAKVVKVAPALG 472

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGIL 481
              D+    V    +  IS +A+E+V  L +    +K GS  + RI+G+  ++GL    L
Sbjct: 473 AFFDLGVRDVV--GFSHISRLADEKVEFLSEDSGAFKLGSTHKARIIGYNDMDGLFQLSL 530

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEI 536
           +    +       D+K G VVKGKV  +  D  GA   +V    G+  L    H+++  +
Sbjct: 531 EQKILDQPFLRIEDIKAGQVVKGKVHKLIADKKGATAVLVHLADGITGLVSELHLADVRL 590

Query: 537 VKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
             P +KF+ G  +  RVL  +  R  I +T KKTLV S +   + Y    +     G I 
Sbjct: 591 QHPERKFREGVPVKARVLYTEPARHQIHLTLKKTLVNSDINPWTDYNMIKEGAAGPGIIA 650

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            + ++G  VRFY  V+ + P +E+      + +  +  GQVV  R +S  P  R++ +S 
Sbjct: 651 NVRRNGATVRFYGTVKAWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVS- 709

Query: 655 MMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
              P  +  +     + +  G++V G V   T  AV +  +  G  KG +   HL D  E
Sbjct: 710 CKDPAAIDTNKEAAFNALNPGAIVKGTVLEKTDEAVTLD-LGNGV-KGLLRIGHLTDGSE 767

Query: 710 HATV--MKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQ--QLPSDASHIHPNS 763
              +  MK  I+ G   + L+VL    +S  + +S K +L   AQ  +L      +    
Sbjct: 768 KKDISTMKK-IRVGGVLEDLVVLAKHVKSKTVTVSNKPTLRKDAQASKLAISVEDLQAGE 826

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            VHG+V  I+    F+     ++G   +S+  +   +  +      QSV   +  V+   
Sbjct: 827 TVHGFVRGILPDKVFIELGNGISGPVFKSQLTEEMLSAPNFGLRKDQSVTVRVSHVDPAK 886

Query: 824 GRITLSLK 831
           G   LS+K
Sbjct: 887 GFFWLSMK 894



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 206/443 (46%), Gaps = 52/443 (11%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G+ V   I  +K  ++ ++      GRI ++E+ D   ++ +     ++FK+ +T+ A++
Sbjct: 931  GTPVNVRIRSVKGTQVNVELAKNVQGRISVSELFDSWDDIPDKKRPTAHFKMNETMQAKV 990

Query: 1122 IAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            + + +  + +          K  ++ELS K +  T  +I   L  ++  ++ G     +V
Sbjct: 991  LGRHDARNHRFLPITHRTSNKIPMYELSAKKNFPTEVDI---LSLDK--IAPGSSHVAFV 1045

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              + + +  + IS +++ ++   D   +  +L   +  F +G A+   V +++     L 
Sbjct: 1046 NNIADRYVWVNISANVRGRIDFFDLTDDLEQLSSVEENFPVGSALKVTVKTVDVAAGRLD 1105

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L        ++ K + + +      +  G ++  R++K+      +VVQI   +   +  
Sbjct: 1106 LTA---ASTVTGKALTLQD------LKVGYVLPARVTKLHDA--SIVVQINETIAAPIFL 1154

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
             +L +                    YD+ +  + KV +I R       +++ L +    +
Sbjct: 1155 EQLAD-------------------DYDKAKPSEFKVGDILRVC----IIDIDLPNKKLSL 1191

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
            S+  S  LS+ +      ++    L  N +V+G++K+V   G ++ L   ++A V +S+L
Sbjct: 1192 SARPSRVLSSTLPIKDPEIKDRAQLKVNDVVRGFIKHVADNGVYVRLGPHVEAYVRVSHL 1251

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1471
            SD Y++  +  F + +LV G+V+S +P  +  +++LKTS  + A  SE    SNL  G I
Sbjct: 1252 SDAYIKDWKSAFHVDQLVTGKVISNKPDQRNPQLSLKTSIIQ-ADYSEPIEFSNLKAGQI 1310

Query: 1472 VIGQIKRVESYGLFITIENTNLV 1494
            V   ++ VE +G+F+ + N+N V
Sbjct: 1311 VTATVRHVEDFGVFLVVANSNNV 1333



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 156/374 (41%), Gaps = 47/374 (12%)

Query: 314 ISIDLLVPGMMVSTRVQSILEN-----GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
           + I+ +  G +V  +V  ++ +      V++      TG V   HL +     + +  + 
Sbjct: 540 LRIEDIKAGQVVKGKVHKLIADKKGATAVLVHLADGITGLVSELHLADVR-LQHPERKFR 598

Query: 369 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
           +   V AR+L+ +P    + LTL   L+++   P         D + +     G G++ +
Sbjct: 599 EGVPVKARVLYTEPARHQIHLTLKKTLVNSDINP-------WTDYNMIKEGAAGPGIIAN 651

Query: 429 IPSTPVST------PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHL----- 473
           +     +        A++ +++++E  +    K +  G  V VR +      R L     
Sbjct: 652 VRRNGATVRFYGTVKAWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVSCK 711

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-- 531
           +  A    K +AF  L        PG +VKG V+        +    GVK L  + H+  
Sbjct: 712 DPAAIDTNKEAAFNAL-------NPGAIVKGTVLEKTDEAVTLDLGNGVKGLLRIGHLTD 764

Query: 532 -SEFEIVKPGKKFKVGA---ELVFRVLGVKSKRITVTHKKTLVK----SKLAILSSYAEA 583
            SE + +   KK +VG    +LV     VKSK +TV++K TL K    SKLAI     +A
Sbjct: 765 GSEKKDISTMKKIRVGGVLEDLVVLAKHVKSKTVTVSNKPTLRKDAQASKLAISVEDLQA 824

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            + +  HG++  I     F+   NG+ G   +S+L  +    P+      Q V  R+   
Sbjct: 825 GETV--HGFVRGILPDKVFIELGNGISGPVFKSQLTEEMLSAPNFGLRKDQSVTVRVSHV 882

Query: 644 IPASRRINLSFMMK 657
            PA     LS  ++
Sbjct: 883 DPAKGFFWLSMKLE 896



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
            E++  +E+ +  GS ++V +       G    +  AS   G   T  D+K G V+  +V 
Sbjct: 1075 EQLSSVEENFPVGSALKVTVKTVDVAAG-RLDLTAASTVTGKALTLQDLKVGYVLPARVT 1133

Query: 508  AVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVT 564
             +     +VQ    + A   L  ++ +++  KP  +FKVG  L   ++ +   +K+++++
Sbjct: 1134 KLHDASIVVQINETIAAPIFLEQLADDYDKAKPS-EFKVGDILRVCIIDIDLPNKKLSLS 1192

Query: 565  HKKTLVKSKLAILSSYAEATDRL------ITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + + V S    +    E  DR       +  G+I  +  +G +VR    V+ +   S L
Sbjct: 1193 ARPSRVLSSTLPIKD-PEIKDRAQLKVNDVVRGFIKHVADNGVYVRLGPHVEAYVRVSHL 1251

Query: 619  GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSEDDLVKLG 670
                  +  S +HV Q+V  +++S+ P  R   LS           +P   S    +K G
Sbjct: 1252 SDAYIKDWKSAFHVDQLVTGKVISNKPDQRNPQLSLKTSIIQADYSEPIEFSN---LKAG 1308

Query: 671  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLV 729
             +V+  V  V    V + V       G      LAD       +K + K G     ++L 
Sbjct: 1309 QIVTATVRHVEDFGVFLVVANSNNVSGLCHVSQLADTPVDKEKVKEMYKKGDAVKAKVLK 1368

Query: 730  LDNESSNLLLSAKYSLI 746
            +D+ +  +  + KYS +
Sbjct: 1369 VDSNTRKISFTLKYSQV 1385



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 30/233 (12%)

Query: 624 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSG---- 675
            E S  + +G   K RI+          LS   K    P    ED  +K G +V G    
Sbjct: 500 SEDSGAFKLGSTHKARIIGYNDMDGLFQLSLEQKILDQPFLRIED--IKAGQVVKGKVHK 557

Query: 676 -VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ------- 726
            + D     AV+V+ +A G + G +   HLAD  L+H         P  +F +       
Sbjct: 558 LIADKKGATAVLVH-LADGIT-GLVSELHLADVRLQH---------PERKFREGVPVKAR 606

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L  +     + L+ K +L+NS     +D + I   +   G + N+   G  VRF G + 
Sbjct: 607 VLYTEPARHQIHLTLKKTLVNSDINPWTDYNMIKEGAAGPGIIANVRRNGATVRFYGTVK 666

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            + P ++  +    D +K +  GQ V    + VN E  ++ +S K      T+
Sbjct: 667 AWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVSCKDPAAIDTN 719



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 40/228 (17%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 780
            ++ +D  +  L LSA+ S + S+  LP       D + +  N VV G++ ++ + G +VR
Sbjct: 1179 IIDIDLPNKKLSLSARPSRVLSST-LPIKDPEIKDRAQLKVNDVVRGFIKHVADNGVYVR 1237

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
                +  +   S   D    D    ++V Q V   ++    +     LSLK S   +   
Sbjct: 1238 LGPHVEAYVRVSHLSDAYIKDWKSAFHVDQLVTGKVISNKPDQRNPQLSLKTSIIQAD-- 1295

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                      E I          S LK       G ++   V    DFGV +     ++V
Sbjct: 1296 --------YSEPIEF--------SNLK------AGQIVTATVRHVEDFGVFLVVANSNNV 1333

Query: 901  YGFITHHQLAGATVE---------SGSVIQAAILDVAKAERLVDLSLK 939
             G     QLA   V+          G  ++A +L V    R +  +LK
Sbjct: 1334 SGLCHVSQLADTPVDKEKVKEMYKKGDAVKAKVLKVDSNTRKISFTLK 1381



 Score = 40.4 bits (93), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 43/228 (18%)

Query: 1257 IHEGDIVGGRISKILS---GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1313
            I  G +V G++ K+++   G   ++V +   + G V    L ++ +  P     E +F  
Sbjct: 545  IKAGQVVKGKVHKLIADKKGATAVLVHLADGITGLVSELHLADVRLQHP-----ERKFR- 598

Query: 1314 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1373
                 EG  VK +VL  +   R   H  L+L+ +L       +SD++   D         
Sbjct: 599  -----EGVPVKARVL-YTEPARHQIH--LTLKKTL------VNSDINPWTDY-------- 636

Query: 1374 EDLSPNMIVQG-----YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1428
                 NMI +G      + NV   G  +     + A + ++ +S+ ++E   K F  G++
Sbjct: 637  -----NMIKEGAAGPGIIANVRRNGATVRFYGTVKAWLPVAEMSEAFIEDATKHFSAGQV 691

Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
            V  R +SV P  +++ V+ K  D      ++    + L+ G IV G +
Sbjct: 692  VNVRAISVNPEERQLLVSCK--DPAAIDTNKEAAFNALNPGAIVKGTV 737


>gi|115388025|ref|XP_001211518.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195602|gb|EAU37302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1798

 Score =  187 bits (475), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 230/902 (25%), Positives = 390/902 (43%), Gaps = 82/902 (9%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQ-INDAVEAQDLALPPDDDVPVFPRGGGH 60
           AA    S +K ++ G      + ++ +N KKQ   DA +A +L +  +D+ P FPRGGG 
Sbjct: 10  AAEDASSAQKRARVG------ADDRKQNQKKQNTGDAPKASELTVLREDE-PSFPRGGGS 62

Query: 61  SLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGK 118
            LT  ER +I   A  D  FE         + +   + E    E VDD  +         
Sbjct: 63  VLTPLERKQIQIQATKDVLFEQKGAKGPSADFEDGDQDEDAEMEDVDDTTTTKKSRKRKS 122

Query: 119 LPRYANKITLKNISAGMKLWGV---VAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
             +   K   K    G+++ G+   V+ +N  ++ + LP  L G      A+   L+ +I
Sbjct: 123 KGKKDAKADAKE--KGVRVEGLNFKVSSINAHNIGLSLPNNLTGYVPLT-AISKKLEQKI 179

Query: 176 E---------------ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIG---KRKIWLSLR 217
           E                ++   L   F++GQ +   V+ +  D  +     +++I LS+ 
Sbjct: 180 EDILKDDGSDDDDEDSEDDSLDLGKYFYLGQYLRAYVVSVGSDSADARSKHRKRIELSVD 239

Query: 218 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-- 273
                 GL+   +   + + A V S+EDHG ++  G+      GF+    +  +  ID  
Sbjct: 240 PRQANSGLTKSDIVTNIAVQASVLSVEDHGLVMDLGIEGSDVKGFMSSKEI--DPKIDYS 297

Query: 274 -VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRV 329
            +K G +   +V   +    V+ LS++ ++ S  + K        +I+  VPG      +
Sbjct: 298 NIKEGSVFLCMVTGQNANGSVIKLSANLNS-SGSIKKSHYLSSAPTINSFVPGTAAEILL 356

Query: 330 QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--V 387
             +  NG+    +     TVD+          + +  +    KV  R++   P S    V
Sbjct: 357 TEVSSNGIAGKIMGMLDATVDLVQSGGNSGKDDLEKKFKIGAKVKGRLVCTFPASEPYKV 416

Query: 388 GLTLNPYLLH----NRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
           G +L  ++         P S      V  I  ++KVV+VD GLG+ + I ST      +V
Sbjct: 417 GFSLLDHVCKFTSDGNGPGSSDDAPAVSAIVQEAKVVKVDPGLGVYVQIGST--KHIGFV 474

Query: 441 TISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
            +S +A+ +V  + +    ++ GS    R++G+  L+ L     +    +       DV 
Sbjct: 475 HVSRLADGQVETITEDHGPFQTGSVHEARVIGYNALDNLYLLSFERQVIDQPFLRLEDVT 534

Query: 498 PGMVVKGKVI-------AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            G VVKGK+         VD  G IV    G+  L P  H ++  +  P KKF+ G  + 
Sbjct: 535 VGAVVKGKIEKLLIGAGGVD--GLIVSLADGITGLVPSMHFADAPLQFPEKKFREGMTVS 592

Query: 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            R+L V  + ++I +T KK+L+ S+ AI   Y        + G I  I+ HG  V+FY  
Sbjct: 593 ARILSVNLEKRQIRLTLKKSLLNSESAIWKDYESIVPGAQSPGTIVNIQPHGAVVQFYGS 652

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 664
           V+GF P SE+      +PS  + +GQVV    +S   AS R+ +S    P+  +E     
Sbjct: 653 VRGFLPVSEMSEAYIKDPSQHFRLGQVVSVHALSVEAASGRLAVS-CKDPSTFTESYRKA 711

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGY 722
            + ++ G LV+G V   + + V++ +   G     +  EH++D  L       S I+ G 
Sbjct: 712 FENIRPGLLVTGTVFEKSSDDVLLKLDEFGLV-ARLTLEHVSDGSLSKQNSTLSKIRVGQ 770

Query: 723 EFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCF 778
           + + LLVLD +    L+  S + SL  + +Q  +P +   +   S V G++ NI   G F
Sbjct: 771 KLNDLLVLDIQRGRRLIKVSGRASLKKAVKQGLIPENFEDVQEGSDVTGFIRNITLDGVF 830

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V FLG L G  P+    D      S      Q V + +  ++ +  R  LS+  +  +  
Sbjct: 831 VEFLGGLIGLVPKRLVGDENITKPSFGMTKSQIVTATVHSIDVDFRRFILSMNPAEATRA 890

Query: 839 DA 840
            A
Sbjct: 891 GA 892



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 204/915 (22%), Positives = 388/915 (42%), Gaps = 136/915 (14%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 685
            +  G V + R++          LSF    + +P    ED  V +G++V G ++ +   A 
Sbjct: 494  FQTGSVHEARVIGYNALDNLYLLSFERQVIDQPFLRLED--VTVGAVVKGKIEKLLIGAG 551

Query: 686  ----VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLS 740
                ++  +A G + G +P+ H AD        K   + G     ++L ++ E   + L+
Sbjct: 552  GVDGLIVSLADGIT-GLVPSMHFADAPLQFPEKK--FREGMTVSARILSVNLEKRQIRLT 608

Query: 741  AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
             K SL+NS   +  D   I P +   G + NI   G  V+F G + GF P S+  +    
Sbjct: 609  LKKSLLNSESAIWKDYESIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIK 668

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
            D S+ + +GQ V  + L V + +GR+ +S K       D S   E +             
Sbjct: 669  DPSQHFRLGQVVSVHALSVEAASGRLAVSCK-------DPSTFTESYR------------ 709

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
                  K  E    G ++ G V E +   V++  +E   V      H   G+  +  S +
Sbjct: 710  ------KAFENIRPGLLVTGTVFEKSSDDVLLKLDEFGLVARLTLEHVSDGSLSKQNSTL 763

Query: 921  QAA----------ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
                         +LD+ +  RL+ +S +           S ++A K+    E  +D+  
Sbjct: 764  SKIRVGQKLNDLLVLDIQRGRRLIKVSGRA----------SLKKAVKQGLIPENFEDVQE 813

Query: 971  HQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 1029
               V   +  I  +   V  L      +    V D N  K P       Q V ATV ++ 
Sbjct: 814  GSDVTGFIRNITLDGVFVEFLGGLIGLVPKRLVGDENITK-PSFGMTKSQIVTATVHSID 872

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKK----------------------SSYDVGSLV 1067
                  R +L +     T   + K   K                       S +  G +V
Sbjct: 873  VDFR--RFILSMNPAEATRAGAKKPVAKTTPKATPSDDAVANAVDDGVSTMSDFSFGRVV 930

Query: 1068 QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIAKS 1125
            + ++  +K  ++ ++      GRI ++EV D   ++ +       F+  Q ++ARI+   
Sbjct: 931  KCKVVSVKATQVNVQLADNIQGRIDVSEVFDKLDDIKDRKQPLRFFRTKQVISARILGIH 990

Query: 1126 NKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDN 1176
            +  + K         K  ++ELS+KPS L  S   + L  E+  V +G    G++  V +
Sbjct: 991  DARNHKFLPISHRTGKYPVFELSVKPSYLKASN-PTPLNLEQ--VQVGSSWLGFINNVAD 1047

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
            +   + +S +++ +L  +D++ + S L + ++ F +G AV  HV +++ +K  L L  + 
Sbjct: 1048 DCLWVNLSPNVRGRLRFMDASDDLSLLADVEKNFPVGSAVKVHVTAVDSQKGRLDLSAKR 1107

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
              D +S   + +           G I+ GR++K+      +++Q+   + G V   ++ +
Sbjct: 1108 RSDKLSFSDISV-----------GMILPGRVTKVTER--QVIMQLTDTIVGAVDLIDMAD 1154

Query: 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1356
                      D  + +P + Y + + ++  V+ + +  +    + LSLR S         
Sbjct: 1155 ----------DYTKANP-TIYQKNEVLRACVVAVDKANK---KISLSLRPS--------- 1191

Query: 1357 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1416
              LS+ +    + +  ++DL  N +V+G+V+ V   G F+ +   +   V +S+LSD Y+
Sbjct: 1192 KVLSSSLPVQDREITSMKDLKVNDVVRGFVRRVADSGLFVTVGHGVTVYVRVSDLSDSYL 1251

Query: 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1476
            +  +  F   +LV GR+  V+P   +++++LK S      ++ +  LS+L  G IV G++
Sbjct: 1252 KEWKDSFQADQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPL-TLSDLKPGQIVTGKV 1310

Query: 1477 KRVESYGLFITIENT 1491
            ++VE +G FI I+ +
Sbjct: 1311 RKVEEFGAFIVIDRS 1325



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 106/478 (22%), Positives = 202/478 (42%), Gaps = 65/478 (13%)

Query: 90   KKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDL 149
            KK   KT  KA  + D + +   DG+S          T+ + S G  +   V  V    +
Sbjct: 893  KKPVAKTTPKATPSDDAVANAVDDGVS----------TMSDFSFGRVVKCKVVSVKATQV 942

Query: 150  VICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK---- 205
             + L   ++G    ++  D +  ++I+  +  L    F   Q++S  +L + D +     
Sbjct: 943  NVQLADNIQGRIDVSEVFDKL--DDIKDRKQPL--RFFRTKQVISARILGIHDARNHKFL 998

Query: 206  ----EIGKRKIW-LSLRLSLLYKG----LSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
                  GK  ++ LS++ S L       L+LE VQ G     ++ ++ D    ++   P+
Sbjct: 999  PISHRTGKYPVFELSVKPSYLKASNPTPLNLEQVQVGSSWLGFINNVADDCLWVNLS-PN 1057

Query: 257  FTGFLPRNNLAENSGI--DVKPGLLLQGVVR----SIDRTRKVVYLSSD--PDTVSKCVT 308
              G L   + +++  +  DV+    +   V+    ++D  +  + LS+    D +S    
Sbjct: 1058 VRGRLRFMDASDDLSLLADVEKNFPVGSAVKVHVTAVDSQKGRLDLSAKRRSDKLS---- 1113

Query: 309  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
                 IS+ +++PG     RV  + E  V++       G VD+  + + +   N    Y 
Sbjct: 1114 --FSDISVGMILPG-----RVTKVTERQVIMQLTDTIVGAVDLIDMADDYTKAN-PTIYQ 1165

Query: 369  QHKKVNARILFVDPTSRAVGLTLNPY-LLHNRAPPSHVKVGDIYDQSKVVRVDRGL---- 423
            +++ + A ++ VD  ++ + L+L P  +L +  P    ++  + D  KV  V RG     
Sbjct: 1166 KNEVLRACVVAVDKANKKISLSLRPSKVLSSSLPVQDREITSMKDL-KVNDVVRGFVRRV 1224

Query: 424  ---GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
               GL + +         YV +SD+++  +++ +  ++    V+ RI             
Sbjct: 1225 ADSGLFVTVGH---GVTVYVRVSDLSDSYLKEWKDSFQADQLVKGRITVVDPEHNKLQMS 1281

Query: 481  LKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSE 533
            LK S  +       T SD+KPG +V GKV  V+ FGA  ++     +  LC    M+E
Sbjct: 1282 LKDSVLDPDYKAPLTLSDLKPGQIVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMAE 1339



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 157/374 (41%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  V +  L + L   +RG  R  DA D + L  ++E N      
Sbjct: 1027 LNLEQVQVGSSWLGFINNVADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKN------ 1080

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F VG  V   V  +D  K         L L        LS   +  GM+L   V  + 
Sbjct: 1081 --FPVGSAVKVHVTAVDSQKGR-------LDLSAKRRSDKLSFSDISVGMILPGRVTKVT 1131

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   ++A++      P +     +L+  V ++D+  K + LS  
Sbjct: 1132 ERQVIMQL-TDTIVGAVDLIDMADDY-TKANPTIYQKNEVLRACVVAVDKANKKISLSLR 1189

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L ++
Sbjct: 1190 PSKVLSSSLPVQDREITSMKDLKVNDVVRGFVRRVADSGLFVTVGHGVTVYVRVSDLSDS 1249

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPP--SHVKVGDIYDQ 413
            +    WK+ +   + V  RI  VDP    + ++L   +L    +AP   S +K G I   
Sbjct: 1250 Y-LKEWKDSFQADQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPLTLSDLKPGQIV-T 1307

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             KV +V+     ++   S  +S   +   S++AE+ V      ++EG  V+ +I+     
Sbjct: 1308 GKVRKVEEFGAFIVIDRSANISGLCHR--SEMAEKRVDDARTLFEEGDAVKAKIIKIDRE 1365

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1366 QGKVSFGLKASYFD 1379


>gi|159129996|gb|EDP55110.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus
           A1163]
          Length = 1822

 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 225/913 (24%), Positives = 388/913 (42%), Gaps = 92/913 (10%)

Query: 3   ASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSL 62
           A +R+ QK+    G +     K+Q K    +    ++  +L +  DD+ P FPRGGG  L
Sbjct: 14  AVTRQPQKRVRVGGAE---QGKDQKKQRTSESTSDLKPTELTVLRDDE-PSFPRGGGSVL 69

Query: 63  TQRERDEIHAEVDAEFEAVERGLHKKNKK--------KKKKTERKANETVDDLGSLFGDG 114
           T  E+ +IH +   +    ++G  K +            +  + + N T   L       
Sbjct: 70  TPLEKKQIHIQATKDVLFEQKGSKKSSDNFAVGDDDEDIEMDDAEDNATSTKLSRKRKAK 129

Query: 115 ISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
              +    AN+        +  K I  G  + G V+ +N  D+ + LP  L G      A
Sbjct: 130 SKKRAKEEANEKQGVRIEGLNFKRIVPGSMVLGQVSSINAHDIGLSLPNNLTGYVPLT-A 188

Query: 167 LDPILDNEIEAN-EDN-----------------LLPTIFHVGQLVSCIVLQLDD---DKK 205
           +   LD +IE    DN                  L   F++GQ +   V+ +     D  
Sbjct: 189 VSKKLDEKIEKILNDNDNEDSDAEEEDGDDDSLDLTDYFYLGQYLRASVVSVGSNAADAP 248

Query: 206 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPR 263
              K++I LS+       GLS   ++    + A V S+EDHG ++  G+      GF+ +
Sbjct: 249 SKNKKRIELSVDPRQANAGLSKSDLEVNTAIQASVVSVEDHGLVMDLGIEGADVKGFMSK 308

Query: 264 NNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLV 320
             +   +    +K G +   +V   +    VV LS++  +              +I+  +
Sbjct: 309 KEIDPKTDYSSIKEGSVFLCMVTGQNANGSVVKLSANLQSAGSIKKSHYLSTASTINSFL 368

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G++   +     TVD+          +    +    K+  RI+  
Sbjct: 369 PGTAAEILLTEVSSSGLIGKIMGMLDATVDLVQSGGNSGKDDLTKKFQMGAKIKGRIVCT 428

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG ++  ++L        P +      +  I  ++KVV VD G+G+ + + S
Sbjct: 429 FPASEPFKVGFSILDHVLKFATEGHGPGTSEDAPAISAIIPETKVVMVDPGMGVYVQMGS 488

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +   ++  S    R++G+   +GL     +    E 
Sbjct: 489 T--KHVGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYSAFDGLYLLSFERKVIEQ 546

Query: 489 LVFTHSDVKPGMVVKGKV-------IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                 DV  G VVKGK+         VD  G IV    G+  L P  H ++  +  P K
Sbjct: 547 PFLRLEDVTVGTVVKGKIEKLLIGPAGVD--GLIVTLADGITGLVPSMHFADTALQFPEK 604

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G  +  R+L V  + ++I +T KK+L+ S+ AI   Y +      + G I  I+ H
Sbjct: 605 KFREGMTITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPH 664

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G  V+FY  V+GF P SE+      +PS  +  GQVV    +S  PA  ++ +S    P+
Sbjct: 665 GAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVS-CKDPS 723

Query: 660 RVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             +E      + ++ G  V+G V   + + V++ +   G     +   H+ D  E   + 
Sbjct: 724 TFTETYRKAFEKIQPGLRVTGTVFEKSVDDVLLKLDEFGLI-ARLDLAHVVDGPESKQIS 782

Query: 715 K-SVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
             S I+ G + + LLVLD + +  L+  SA+ SL  +A+Q  LP+    I   + V G+V
Sbjct: 783 ALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEVTGFV 842

Query: 770 CNIIETGCFVRFLGRLTGFAPR----SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            NI   G F+ FLG + G  P+     + V+    D+ K+  V  +V S    ++ +  R
Sbjct: 843 RNITSDGLFIEFLGGIIGLVPKRLLADENVNKPDYDMVKSQLVTATVHS----IDRDFQR 898

Query: 826 ITLSLKQSCCSST 838
             LS+K S  +S 
Sbjct: 899 FILSMKPSEATSA 911



 Score =  167 bits (423), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 200/861 (23%), Positives = 385/861 (44%), Gaps = 108/861 (12%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGTVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGM 610

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
            F + +    EKI            L+ V G +    ++  + + ++FG++   +    V 
Sbjct: 725  FTETYRKAFEKIQ---------PGLR-VTGTVFEKSVDDVLLKLDEFGLIARLDLAHVVD 774

Query: 902  GFITHHQLAGATVESGSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
            G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A K+  
Sbjct: 775  GPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKAAKQGS 824

Query: 961  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQKQFLN 1017
                 +D+     V   V  +  + L +        IG      ++D N  K P    + 
Sbjct: 825  LPAKFEDIQEGAEVTGFVRNITSDGLFIEF--LGGIIGLVPKRLLADENVNK-PDYDMVK 881

Query: 1018 GQSVIATVMAL------------PSSSTAG----RLLLLLKAISETETSSSKRAKKKSSY 1061
             Q V ATV ++            PS +T+            +  E   +  +  K  S +
Sbjct: 882  SQLVTATVHSIDRDFQRFILSMKPSEATSAGPKKPAPKPTPSNDEVTNAVDESIKSMSDF 941

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTA 1119
              G  V  ++  +K  ++ ++      GRI ++EV D   ++ +       F+  Q ++A
Sbjct: 942  TFGRTVNCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRPKQLISA 1001

Query: 1120 RII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            RI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V +G    G+
Sbjct: 1002 RILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQVGSTWVGF 1058

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            V  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++ EK  L
Sbjct: 1059 VNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVDTEKGRL 1118

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L  +     +S + + +           G I+ GR++K+      +++Q+   + G V+
Sbjct: 1119 DLTAKQRSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDTVVGAVN 1165

Query: 1291 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
              +L +          D  + +P + Y +   ++  V+ + +  +    + LSLR S   
Sbjct: 1166 LIDLAD----------DYSKANP-TVYHKNDVLRACVVGVDKANK---KISLSLRPS--- 1208

Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
                    LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A V +S+
Sbjct: 1209 ------KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSD 1262

Query: 1411 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1470
            LSD Y++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + +L VG 
Sbjct: 1263 LSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPI-TMHDLKVGQ 1321

Query: 1471 IVIGQIKRVESYGLFITIENT 1491
             V G++++VE +G FI I+ +
Sbjct: 1322 FVTGKVRKVEEFGAFIVIDRS 1342



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 39/315 (12%)

Query: 541  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQR--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 659  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 705
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 706  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 761  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
                V G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIK 1378

Query: 819  VNSETGRITLSLKQS 833
            ++ E+G+I+ SLK S
Sbjct: 1379 IDRESGKISFSLKAS 1393



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 59/386 (15%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 992  FFRPKQLISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1051

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1052 GSTWVGFVNNVADDCLWINLS-PNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAA 1110

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + L++   + SK   +D   IS+ +++PG     RV  + E  V++       
Sbjct: 1111 VDTEKGRLDLTAKQRS-SKLSFED---ISVGMILPG-----RVTKVTEKQVIMQLSDTVV 1161

Query: 347  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            G V++  L + +    PT   KND      + A ++ VD  ++ + L+L P  + + + P
Sbjct: 1162 GAVNLIDLADDYSKANPTVYHKNDV-----LRACVVGVDKANKKISLSLRPSKVLSSSLP 1216

Query: 403  ---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                       +KV D+  +  V RV D GL + L    T     AYV +SD+++  +++
Sbjct: 1217 VQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGHDVT-----AYVRVSDLSDSYLKE 1270

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAV 509
             +  ++    V+ R+      +G     LK S  +       T  D+K G  V GKV  V
Sbjct: 1271 WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQFVTGKVRKV 1330

Query: 510  DSFGA--IVQFPGGVKALCPLPHMSE 533
            + FGA  ++     +  LC    M++
Sbjct: 1331 EEFGAFIVIDRSANISGLCHRSEMAD 1356



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G V  V +  L I L   +RG  R  DA D + L  ++E +      
Sbjct: 1044 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH------ 1097

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D +K   G+  +    R S     LS E +  GM+L   V  + 
Sbjct: 1098 --FPIGSALKVHVAAVDTEK---GRLDLTAKQRSS----KLSFEDISVGMILPGRVTKVT 1148

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +LA++      P +     +L+  V  +D+  K + LS  
Sbjct: 1149 EKQVIMQLS-DTVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSLR 1206

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L ++
Sbjct: 1207 PSKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDS 1266

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + ++L   +L    +AP +   +KVG  +  
Sbjct: 1267 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQ-FVT 1324

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             KV +V+     ++   S  +S   +   S++A++ V      Y+EG  V+ +I+     
Sbjct: 1325 GKVRKVEEFGAFIVIDRSANISGLCHR--SEMADKRVDDARTLYEEGDLVKAKIIKIDRE 1382

Query: 474  EGLATGILKASAFE 487
             G  +  LKAS F+
Sbjct: 1383 SGKISFSLKASHFK 1396


>gi|71002516|ref|XP_755939.1| rRNA biogenesis protein RRP5 [Aspergillus fumigatus Af293]
 gi|66853577|gb|EAL93901.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus
           Af293]
          Length = 1822

 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 225/913 (24%), Positives = 388/913 (42%), Gaps = 92/913 (10%)

Query: 3   ASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSL 62
           A +R+ QK+    G +     K+Q K    +    ++  +L +  DD+ P FPRGGG  L
Sbjct: 14  AVTRQPQKRVRVGGAE---QGKDQKKQRTSESTSDLKPTELTVLRDDE-PSFPRGGGSVL 69

Query: 63  TQRERDEIHAEVDAEFEAVERGLHKKNKK--------KKKKTERKANETVDDLGSLFGDG 114
           T  E+ +IH +   +    ++G  K +            +  + + N T   L       
Sbjct: 70  TPLEKKQIHIQATKDVLFEQKGSKKSSDNFAVGDDDEDIEMDDAEDNATSTKLSRKRKAK 129

Query: 115 ISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
              +    AN+        +  K I  G  + G V+ +N  D+ + LP  L G      A
Sbjct: 130 SKKRAKEEANEKQGVRIEGLNFKRIVPGSMVLGQVSSINAHDIGLSLPNNLTGYVPLT-A 188

Query: 167 LDPILDNEIEAN-EDN-----------------LLPTIFHVGQLVSCIVLQLDD---DKK 205
           +   LD +IE    DN                  L   F++GQ +   V+ +     D  
Sbjct: 189 VSKKLDEKIEKILNDNDNEDSDAEEEDGDDDSLDLTDYFYLGQYLRASVVSVGSNAADAP 248

Query: 206 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPR 263
              K++I LS+       GLS   ++    + A V S+EDHG ++  G+      GF+ +
Sbjct: 249 SKNKKRIELSVDPRQANAGLSKSDLEVNTAIQASVVSVEDHGLVMDLGIEGADVKGFMSK 308

Query: 264 NNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLV 320
             +   +    +K G +   +V   +    VV LS++  +              +I+  +
Sbjct: 309 KEIDPKTDYSSIKEGSVFLCMVTGQNANGSVVKLSANLQSAGSIKKSHYLSTASTINSFL 368

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G++   +     TVD+          +    +    K+  RI+  
Sbjct: 369 PGTAAEILLTEVSSSGLIGKIMGMLDATVDLVQSGGNSGKDDLTKKFQMGAKIKGRIVCT 428

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG ++  ++L        P +      +  I  ++KVV VD G+G+ + + S
Sbjct: 429 FPASEPFKVGFSILDHVLKFATEGHGPGTSEDAPAISAIIPETKVVMVDPGMGVYVQMGS 488

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +   ++  S    R++G+   +GL     +    E 
Sbjct: 489 T--KHVGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYSAFDGLYLLSFERKVIEQ 546

Query: 489 LVFTHSDVKPGMVVKGKV-------IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                 DV  G VVKGK+         VD  G IV    G+  L P  H ++  +  P K
Sbjct: 547 PFLRMEDVTVGTVVKGKIEKLLIGPAGVD--GLIVTLADGITGLVPSMHFADTALQFPEK 604

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G  +  R+L V  + ++I +T KK+L+ S+ AI   Y +      + G I  I+ H
Sbjct: 605 KFREGMTITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPH 664

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G  V+FY  V+GF P SE+      +PS  +  GQVV    +S  PA  ++ +S    P+
Sbjct: 665 GAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVS-CKDPS 723

Query: 660 RVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             +E      + ++ G  V+G V   + + V++ +   G     +   H+ D  E   + 
Sbjct: 724 TFTETYRKAFEKIQPGLRVTGTVFEKSVDDVLLKLDEFGLI-ARLDLAHVVDGPESKQIS 782

Query: 715 K-SVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
             S I+ G + + LLVLD + +  L+  SA+ SL  +A+Q  LP+    I   + V G+V
Sbjct: 783 ALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEVTGFV 842

Query: 770 CNIIETGCFVRFLGRLTGFAPR----SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            NI   G F+ FLG + G  P+     + V+    D+ K+  V  +V S    ++ +  R
Sbjct: 843 RNITSDGLFIEFLGGIIGLVPKRLLADENVNKPDYDMVKSQLVTATVHS----IDRDFQR 898

Query: 826 ITLSLKQSCCSST 838
             LS+K S  +S 
Sbjct: 899 FILSMKPSEATSA 911



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 202/866 (23%), Positives = 385/866 (44%), Gaps = 118/866 (13%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGTVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGM 610

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHES----NDFGVVVSFEE 896
            F + +    EKI                 G  + G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYRKAFEKIQ---------------PGLRVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 897  HSDVYGFITHHQLAGATVESGSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQ 1012
             K+       +D+     V   V  +  + L +        IG      ++D N  K P 
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEF--LGGIIGLVPKRLLADENVNK-PD 876

Query: 1013 KQFLNGQSVIATVMAL------------PSSSTAG----RLLLLLKAISETETSSSKRAK 1056
               +  Q V ATV ++            PS +T+            +  E   +  +  K
Sbjct: 877  YDMVKSQLVTATVHSIDRDFQRFILSMKPSEATSAGPKKPAPKPTPSNDEVTNAVDESIK 936

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 1114
              S +  G  V  ++  +K  ++ ++      GRI ++EV D   ++ +       F+  
Sbjct: 937  SMSDFTFGRTVNCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRPK 996

Query: 1115 QTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1165
            Q+++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V +G 
Sbjct: 997  QSISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQVGS 1053

Query: 1166 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
               G+V  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++ 
Sbjct: 1054 TWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVDT 1113

Query: 1226 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285
            EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   +
Sbjct: 1114 EKGRLDLTAKQRSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDTV 1160

Query: 1286 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1345
             G V+  +L +          D  + +P + Y +   ++  V+ + +  +    + LSLR
Sbjct: 1161 VGAVNLIDLAD----------DYSKANP-TVYHKNDVLRACVVGVDKANK---KISLSLR 1206

Query: 1346 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1405
             S           LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A 
Sbjct: 1207 PS---------KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAY 1257

Query: 1406 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1465
            V +S+LSD Y++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + +
Sbjct: 1258 VRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPI-TMHD 1316

Query: 1466 LHVGDIVIGQIKRVESYGLFITIENT 1491
            L VG  V G++++VE +G FI I+ +
Sbjct: 1317 LKVGQFVTGKVRKVEEFGAFIVIDRS 1342



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 39/315 (12%)

Query: 541  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQR--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 659  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 705
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 706  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 761  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
                V G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIK 1378

Query: 819  VNSETGRITLSLKQS 833
            ++ E+G+I+ SLK S
Sbjct: 1379 IDRESGKISFSLKAS 1393



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 50/349 (14%)

Query: 214  LSLRLSLLYKG----LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 269
            LS++ S L       L+LE VQ G     +V ++ D    ++   P+  G L   + +++
Sbjct: 1029 LSVKPSFLQAANPSPLNLEQVQVGSTWVGFVNNVADDCLWINLS-PNVRGRLRFMDASDD 1087

Query: 270  SGI--DVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323
              +  DV+     G  L+  V ++D  +  + L++   + SK   +D   IS+ +++PG 
Sbjct: 1088 LSLFADVEKHFPIGSALKVHVAAVDTEKGRLDLTAKQRS-SKLSFED---ISVGMILPG- 1142

Query: 324  MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILF 379
                RV  + E  V++       G V++  L + +    PT   KND      + A ++ 
Sbjct: 1143 ----RVTKVTEKQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDV-----LRACVVG 1193

Query: 380  VDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLGLLLDI 429
            VD  ++ + L+L P  + + + P           +KV D+  +  V RV D GL + L  
Sbjct: 1194 VDKANKKISLSLRPSKVLSSSLPVQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGH 1252

Query: 430  PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE-- 487
              T     AYV +SD+++  +++ +  ++    V+ R+      +G     LK S  +  
Sbjct: 1253 DVT-----AYVRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPE 1307

Query: 488  -GLVFTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSE 533
                 T  D+K G  V GKV  V+ FGA  ++     +  LC    M++
Sbjct: 1308 YKAPITMHDLKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMAD 1356



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G V  V +  L I L   +RG  R  DA D + L  ++E +      
Sbjct: 1044 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH------ 1097

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D +K   G+  +    R S     LS E +  GM+L   V  + 
Sbjct: 1098 --FPIGSALKVHVAAVDTEK---GRLDLTAKQRSS----KLSFEDISVGMILPGRVTKVT 1148

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +LA++      P +     +L+  V  +D+  K + LS  
Sbjct: 1149 EKQVIMQLS-DTVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSLR 1206

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L ++
Sbjct: 1207 PSKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDS 1266

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + ++L   +L    +AP +   +KVG  +  
Sbjct: 1267 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQ-FVT 1324

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             KV +V+     ++   S  +S   +   S++A++ V      Y+EG  V+ +I+     
Sbjct: 1325 GKVRKVEEFGAFIVIDRSANISGLCHR--SEMADKRVDDARTLYEEGDLVKAKIIKIDRE 1382

Query: 474  EGLATGILKASAFE 487
             G  +  LKAS F+
Sbjct: 1383 SGKISFSLKASHFK 1396


>gi|451995534|gb|EMD88002.1| hypothetical protein COCHEDRAFT_1183202 [Cochliobolus
           heterostrophus C5]
          Length = 1784

 Score =  186 bits (473), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 236/898 (26%), Positives = 391/898 (43%), Gaps = 89/898 (9%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
           A  S+K +  S     K  K+  +Q   +K ++  A  A   ++  D++   FPRGG   
Sbjct: 12  ATPSKKPKGASGDRSAKRRKSDVDQQSPAKAKLESA--APPTSIFKDEEKKSFPRGGASV 69

Query: 62  LTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKL 119
           LT  E  +I   A  D  FE          +  +K+      E  +D+GS   +  S   
Sbjct: 70  LTPLEHKQIQIKANQDVLFE----------QSGQKRPGGDDGEGYNDMGSEDDEKKSAPK 119

Query: 120 PRYANKITLKNI-SAGMK--------LWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
            +       K    +G K        L   + +++ +DLV+ LP  L G   L   +D L
Sbjct: 120 SKKKVTKKSKKTHESGEKEDVVKVETLSYKITDISHQDLVLALPNNLVGYVPLTAVSDKL 179

Query: 168 DPIL---------DNEIEANEDNL----LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIW 213
           +  L         D E  +++D+     L  +F VGQ L +CI     +  K   ++++ 
Sbjct: 180 NERLEKLLKEDESDKEEGSDKDDFEDVDLKDLFSVGQYLRACITATSSEGAK--ARKRLE 237

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENS- 270
           LS+   L+  GL+   +    ++ A V S EDHG ++  GL   T  GFLP+  L  N  
Sbjct: 238 LSIEPKLVNTGLTKRKIPVNGMIQASVVSNEDHGLVMDLGLNDATLKGFLPKGELGPNLL 297

Query: 271 GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVST 327
              V+ G +   ++  ++   ++V LS+D  T +  +TK     +  +ID+ +PG  V  
Sbjct: 298 HSKVQEGAVFMCLITGLNSDGRIVKLSAD-HTKAGNLTKGNTLTEAPTIDVFLPGTAVDL 356

Query: 328 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--R 385
            V     N +    L     T D +H   T   T+    +    KV AR+LF  P S  R
Sbjct: 357 LVTENTPNTITGKILGLIDATADAYHSGATEKATDMSQKHKIGSKVKARVLFTCPGSDPR 416

Query: 386 AVGLTLNPYLL----------HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
            VG++L  ++L            R PP   + +  I + +KVV+V    G   D+    V
Sbjct: 417 KVGVSLLDHVLSLSTRMSGKPKERKPPIDLLPISTIVESAKVVKVAPSQGAFFDLGIKDV 476

Query: 435 STPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVF 491
               +  IS +++++V  L ++   +K  S  + RI+G+  L+GL    L+    +    
Sbjct: 477 V--GFAHISRLSDDKVDILSEEAGAFKLDSKHKARIVGYNALDGLFQLSLEKKVIDQPFL 534

Query: 492 THSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
              D+K G VVKGKV  +  D  GA   +V    G+  L P  H+++  +  P +KF+ G
Sbjct: 535 RIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREG 594

Query: 547 AELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
             +  RVL  +  R  I +T KK+LV S++   ++Y   ++     G + ++ ++G  V+
Sbjct: 595 LPVTARVLYTEPARHQIHLTLKKSLVNSEVKPWTNYDMISEGATGPGILVRVRRNGATVQ 654

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           FYN V+ + P +E+      + +  +H GQVV  R++ S+ A  R  L     P  V  +
Sbjct: 655 FYNRVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVL-SVDAKERQLLVSCKDPAAVDTN 713

Query: 665 -----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSV 717
                + +  G +V G V V   +      I  G  KG +   HL D  E   +  MK  
Sbjct: 714 KEAAFNALNPGGIVKGTV-VEKSDESATLDIGNGV-KGILRLGHLTDGSEKKDISTMKK- 770

Query: 718 IKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNII 773
           I+ G   + L++L    +S    +S K SL   AQ  +L      +     VHG+V  I+
Sbjct: 771 IRVGGTLEDLVILTKHGKSKTATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGIL 830

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               FV     ++G   RS+  +   A         QS+ + +  V+   G   LS+K
Sbjct: 831 SDKVFVELGNGISGALFRSQLPEDMAAAPEFGLRKDQSITARVTHVDVGKGLFWLSMK 888



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/441 (21%), Positives = 209/441 (47%), Gaps = 47/441 (10%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G+L+   +  +K  +L ++      GRI ++E+ ++  ++ +     ++FK+  T+ AR+
Sbjct: 927  GTLMTVRVRSVKDTQLNVELAANVPGRISVSELFENWDSIPDKKRPTAHFKMNDTIQARV 986

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1173
            + + +  + +  FL   S   +  T  E+ +K   +  E DV      + G     ++  
Sbjct: 987  LGRHDPRNFR--FLPITSRSSNKTTTYEMTAKTEEIKSEADVLSLDKVTTGSSYIAFINN 1044

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            + +    + IS +++ ++   D   +  +L + ++ F +G A+   V +++     L L 
Sbjct: 1045 IADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGSALKVRVKAVDAVNGKLDLT 1104

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                   ++ K++ + +      +  G ++  R++K+      +VVQI   +   +   +
Sbjct: 1105 A---ASTVTGKSLSLQD------LKVGHVLPARVTKLHDA--SIVVQINESIAAPIFMEQ 1153

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353
            L +         YD+ Q           FV   VL +         +++ + +   G+S+
Sbjct: 1154 LAD--------DYDKAQ--------PKNFVVGDVLRVCV-------IDIDIPNKKLGLSA 1190

Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
              S  LS+ +      +     L  N +V+G+VK++ + G ++ L   ++A V +S+LSD
Sbjct: 1191 RPSRVLSSSLPVKDPEITDRAQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSD 1250

Query: 1414 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
             Y++  +  F + +LV G+V+S +   +  +++LKTS  +T    E  + +NL +G IV 
Sbjct: 1251 EYIKDWKSAFHVDQLVTGKVISNKDDQRNPQLSLKTSVIKT-DYVEPLDFANLKIGQIVT 1309

Query: 1474 GQIKRVESYGLFITIENTNLV 1494
             +++ VE YG+F+ ++N+N V
Sbjct: 1310 AKVRHVEDYGVFLIVDNSNNV 1330



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 103/469 (21%), Positives = 191/469 (40%), Gaps = 65/469 (13%)

Query: 1008 QKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET--SSSKRAKKKSSYDV-- 1063
            +K P   F    ++ A V+          L +  ++ ++T T   ++K  + KS  DV  
Sbjct: 969  KKRPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS 1028

Query: 1064 ------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
                  GS   A I  I    + +       GRI   ++ DD   +  ++  NF +G  +
Sbjct: 1029 LDKVTTGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKL-SDVEKNFPVGSAL 1087

Query: 1118 TARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1177
              R+ A           +  ++ K  +   S +  K L  + D+ +G  +   V K+ + 
Sbjct: 1088 KVRVKA-----------VDAVNGKLDLTAASTVTGKSLSLQ-DLKVGHVLPARVTKLHDA 1135

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP- 1236
              ++ I+  + A +F+   A +  + Q   + F +G  +   V+ I+   K L L  RP 
Sbjct: 1136 SIVVQINESIAAPIFMEQLADDYDKAQ--PKNFVVGDVLRVCVIDIDIPNKKLGLSARPS 1193

Query: 1237 --FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                  +  K  +I+ D  Q  +++  +V G +  I +   G+ V++GPH+   V  + L
Sbjct: 1194 RVLSSSLPVKDPEIT-DRAQLKVNQ--VVRGFVKHIANN--GVYVRLGPHVEAYVRVSHL 1248

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
                        DE   D  S +   Q V  KV+      R   + +LSL++S+      
Sbjct: 1249 S-----------DEYIKDWKSAFHVDQLVTGKVISNKDDQR---NPQLSLKTSV------ 1288

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLS 1412
                + TD   P        +L    IV   V++V   G F+++  S  +     +S ++
Sbjct: 1289 ----IKTDYVEP----LDFANLKIGQIVTAKVRHVEDYGVFLIVDNSNNVSGLCHISQIA 1340

Query: 1413 DGYV--ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
            D  V  E  +  +    +V  +V+ V+P S++V  TLK S  +   + E
Sbjct: 1341 DALVDKEKLKDMYKKDDVVKAKVIKVDPKSRKVSFTLKYSQVKDQGEDE 1389



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 177/447 (39%), Gaps = 84/447 (18%)

Query: 538  KPGKKFKVGAELVFRVLG-------------VKSKRITVTHKKTL----VKSKLAILSSY 580
            +P   FK+   +  RVLG              +S   T T++ T     +KS+  +LS  
Sbjct: 971  RPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS-- 1028

Query: 581  AEATDRLITH----GWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQ 634
                D++ T      +I  I     +V     ++G     +L   L+   +    + VG 
Sbjct: 1029 ---LDKVTTGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGS 1085

Query: 635  VVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--- 689
             +K R+ +    + +++L+     T   +S  DL K+G ++   V  +   ++VV +   
Sbjct: 1086 ALKVRVKAVDAVNGKLDLTAASTVTGKSLSLQDL-KVGHVLPARVTKLHDASIVVQINES 1144

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLIN 747
            IA       I  E LAD  + A     V+    +  ++ V+D +  N  L LSA+ S + 
Sbjct: 1145 IA-----APIFMEQLADDYDKAQPKNFVVG---DVLRVCVIDIDIPNKKLGLSARPSRVL 1196

Query: 748  SAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            S+  LP      +D + +  N VV G+V +I   G +VR    +  +   S   D    D
Sbjct: 1197 SSS-LPVKDPEITDRAQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKD 1255

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
                ++V Q V   ++    +     LSLK S         ++  ++     A L+    
Sbjct: 1256 WKSAFHVDQLVTGKVISNKDDQRNPQLSLKTSV--------IKTDYVEPLDFANLK---- 1303

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------ 915
                        IG ++  KV    D+GV +  +  ++V G     Q+A A V+      
Sbjct: 1304 ------------IGQIVTAKVRHVEDYGVFLIVDNSNNVSGLCHISQIADALVDKEKLKD 1351

Query: 916  ---SGSVIQAAILDVAKAERLVDLSLK 939
                  V++A ++ V    R V  +LK
Sbjct: 1352 MYKKDDVVKAKVIKVDPKSRKVSFTLK 1378



 Score = 43.9 bits (102), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 24/186 (12%)

Query: 667 VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 720
           +K G +V G V     D     AV+V+ ++ G + G +P  HLAD  L+H         P
Sbjct: 539 IKAGEVVKGKVHKLFADKTGATAVLVH-LSDGIT-GLVPEMHLADVRLQH---------P 587

Query: 721 GYEFDQLL-----VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
             +F + L     VL  E +   + L+ K SL+NS  +  ++   I   +   G +  + 
Sbjct: 588 ERKFREGLPVTARVLYTEPARHQIHLTLKKSLVNSEVKPWTNYDMISEGATGPGILVRVR 647

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G  V+F  R+  + P ++  +    D ++ ++ GQ V   +L V+++  ++ +S K  
Sbjct: 648 RNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVLSVDAKERQLLVSCKDP 707

Query: 834 CCSSTD 839
               T+
Sbjct: 708 AAVDTN 713



 Score = 40.8 bits (94), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 143/343 (41%), Gaps = 48/343 (13%)

Query: 113  DGISGKLPRYA------NKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            D ++GKL   A        ++L+++  G  L   V ++++  +V+ +   +         
Sbjct: 1095 DAVNGKLDLTAASTVTGKSLSLQDLKVGHVLPARVTKLHDASIVVQINESIAA------- 1147

Query: 167  LDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS-LLYKGL 225
              PI   ++  + D   P  F VG ++   V+ +D     I  +K+ LS R S +L   L
Sbjct: 1148 --PIFMEQLADDYDKAQPKNFVVGDVLRVCVIDID-----IPNKKLGLSARPSRVLSSSL 1200

Query: 226  SLE--------TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 277
             ++         ++   V+  +VK I ++G  +  G P    ++  ++L++    D K  
Sbjct: 1201 PVKDPEITDRAQLKVNQVVRGFVKHIANNGVYVRLG-PHVEAYVRVSHLSDEYIKDWKSA 1259

Query: 278  LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP--------GMMVSTRV 329
              +  +V     T KV+  S+  D  +  ++     I  D + P        G +V+ +V
Sbjct: 1260 FHVDQLV-----TGKVI--SNKDDQRNPQLSLKTSVIKTDYVEPLDFANLKIGQIVTAKV 1312

Query: 330  QSILENGVML--SFLTYFTGTVDIFHLQNTF-PTTNWKNDYNQHKKVNARILFVDPTSRA 386
            + + + GV L        +G   I  + +        K+ Y +   V A+++ VDP SR 
Sbjct: 1313 RHVEDYGVFLIVDNSNNVSGLCHISQIADALVDKEKLKDMYKKDDVVKAKVIKVDPKSRK 1372

Query: 387  VGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
            V  TL    + ++     ++     +QS+    D G+ L  D+
Sbjct: 1373 VSFTLKYSQVKDQGEDEEMEDASDVEQSEDGYSDGGIELDDDV 1415


>gi|46111359|ref|XP_382737.1| hypothetical protein FG02561.1 [Gibberella zeae PH-1]
          Length = 1782

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 212/814 (26%), Positives = 353/814 (43%), Gaps = 95/814 (11%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEV------DAEFEAVERGLHKKNKKK--KKKTERKA 100
           +D P+FPRGG   LT  E+ +I+ E       D EF  V +   KK +K   K   ++  
Sbjct: 59  EDEPMFPRGGASILTPLEQKKINIEAKADAMRDEEFNTVTKDQKKKKRKTALKGGDKKVD 118

Query: 101 NETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG- 159
            +T D+  ++  + +S            KN+  G  +   V  +N  ++ + LP  L G 
Sbjct: 119 KKTGDEEQAIRVESLS-----------FKNLVKGSLVLAQVTRINNLNVEVALPNNLTGH 167

Query: 160 --LARAADALDPILDNEIEANEDNL-----------LPTIFHVGQ-LVSCIVLQLDDDKK 205
             +   +  L   L+NE    +D             L +IF VGQ L + +V  +++   
Sbjct: 168 ISIVAVSQQLTERLENETADKDDEEEEEAEDDEGIDLKSIFAVGQYLRAYVVSTVEESTT 227

Query: 206 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNN 265
             GKR+I LSLR S    GL  + V     + A V S++D G+++  G+ +   FL R+ 
Sbjct: 228 GKGKRRIELSLRPSEANTGLEKDDVVPNATVMASVASVQDRGFVMDTGIENLGAFLSRSE 287

Query: 266 LAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPG 322
           +  +  ID K   PG +    V S     K+  LS     +           +I   +PG
Sbjct: 288 V--DKTIDEKRLQPGAVFLCQVISKGANGKIAQLSLQQKKIGNPKNLPTDATTIKTFLPG 345

Query: 323 MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP 382
            M    V +    G+    + +   T DI H        +    Y    +  AR++   P
Sbjct: 346 TMTDVLVSNTDRRGLAGKIMGHLDVTADIIHSGVGPAGVSLDTAYKIGSRAKARVICNFP 405

Query: 383 TSRA--VGLTLNPYLL------------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
            +R   +G++L P++               + P   + +  + +   V  V+  +GL +D
Sbjct: 406 GAREPKLGISLLPHITTLEKKRSTKSTDSKKNPTQVLPISSLVETCTVRHVEADIGLFVD 465

Query: 429 IPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASA 485
           I    +S   +V IS V + +V  L +    YK GS  + R++G+  ++GL     + S 
Sbjct: 466 IGIPGLS--GFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVGYNEIDGLFQISFEKSV 523

Query: 486 FEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPG 540
            E       DV  G VV  ++  + VD  G    IV+   G+    P  H+S+  +  P 
Sbjct: 524 LEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHPE 583

Query: 541 KKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           KKF+ G ++  RVL   +  K++ +T KKT+V S+  ++ SY E T  +   G I K+  
Sbjct: 584 KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 643

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----- 653
            G  ++F+  VQGF P SE+      +P   + +GQVV   ++   P  +R+ +S     
Sbjct: 644 SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 703

Query: 654 -FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
            F ++     +   ++L  +VS  V   T + V V  +A    K TI   HL D      
Sbjct: 704 AFGLEKQNALKK--LQLSDVVSAKVTQKTEDQVFVE-LADSQLKATISVGHLTD------ 754

Query: 713 VMKSVIKPGYEFDQLLV-----------LDNESSNLLLSAKYSLINSAQQ--LPSDASHI 759
             KS  K  Y F ++ V            D+    ++LS K SL+++++   L +     
Sbjct: 755 --KSNSKNQYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEKA 812

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
               +V G+V NI  T  FV+F G LT   P+++
Sbjct: 813 KEGKIVAGFVRNITVTAVFVQFAGNLTALLPKAR 846



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 222/448 (49%), Gaps = 57/448 (12%)

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 1118
            + G++  A+IT +K  +L ++       GRI +++V D   ++++  +    +   Q ++
Sbjct: 909  EFGTITNAKITSVKDTQLNVQLANSKVQGRIDVSQVFDKWEDILDPKDPLDKYNKKQNIS 968

Query: 1119 ARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
             R++    AK +K  P   +S   + EL+ KPS +    +   L  E  DV +G     +
Sbjct: 969  VRVMGVHSAKDHKFLPFSHRSLHSVLELTAKPSDIKAKTL-KPLSLE--DVKVGDTHVAF 1025

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            V     +   + +S  ++ ++  ++++ + S+L + +  F IG A+   V +++     L
Sbjct: 1026 VNNSSPQHLWVNLSPSVRGRINAMEASDDLSQLNDLEANFPIGSALKVRVTAVDVRNNRL 1085

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L         S ++ + S+    + + +  ++ GR++K+      ++V++   + G VH
Sbjct: 1086 DL---------SARSSNSSDAVTWSALKQNMVLPGRVTKV--NERQVLVKLSEAVSGPVH 1134

Query: 1291 FTELKNICVSDPLSGYDEGQFDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSL 1348
              ++ +              FD ++  ++  G  V+  V+E+  + +    + LS R S 
Sbjct: 1135 LPDMTD-------------DFDTINTLNQRKGDIVRVSVVELDSSNK---RLRLSTRPSR 1178

Query: 1349 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1408
              MSST        +    K +  +  L    IV+G+VKNV+ KG F++L  ++ A V +
Sbjct: 1179 -IMSST--------LPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKI 1229

Query: 1409 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNL 1466
            SNLSD Y++  +  F + +LV GRV++V+ L++ VE++LK+S  D      +  N++   
Sbjct: 1230 SNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE- 1288

Query: 1467 HVGDIVIGQIKRVESYGLFITIENTNLV 1494
              G +V G++++VE +G FI I+ ++ V
Sbjct: 1289 --GQVVTGKVRKVEEFGAFILIDGSDNV 1314



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 161/395 (40%), Gaps = 57/395 (14%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG    A +    P  L +       GRI+  E +DD S +  +L +NF IG  +  R+ 
Sbjct: 1018 VGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQL-NDLEANFPIGSALKVRVT 1076

Query: 1123 A---KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
            A   ++N+ D+        S     +T S +   ++             G V KV+    
Sbjct: 1077 AVDVRNNRLDLSA----RSSNSSDAVTWSALKQNMVL-----------PGRVTKVNERQV 1121

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
            L+ +S  +   + + D   +   +    +R   G  V   V+ ++   K LRL  RP + 
Sbjct: 1122 LVKLSEAVSGPVHLPDMTDDFDTINTLNQRK--GDIVRVSVVELDSSNKRLRLSTRPSR- 1178

Query: 1240 GISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
             I   T+ I +  +   + +  GDIV G +  +     GL V +G  +   V  + L + 
Sbjct: 1179 -IMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDK--GLFVLLGGQVTALVKISNLSDR 1235

Query: 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
             + +     D  Q D        Q VK +V+ + +  R   HVE+SL+SS+         
Sbjct: 1236 YIKE---WKDHFQVD--------QLVKGRVVAVDKLTR---HVEMSLKSSV--------- 1272

Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGY 1415
             +  D   P  +     D+    +V G V+ V   G FI++  S  +      S +++  
Sbjct: 1273 -VDEDYTPPTTY----NDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQA 1327

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            V+   K +  G  V  RVLSV+   +RV   LK S
Sbjct: 1328 VKDATKLYKEGDAVKARVLSVDAEKRRVTFGLKPS 1362



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 160/368 (43%), Gaps = 46/368 (12%)

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGI 272
            K LSLE V+ G    A+V +       ++   PS  G +            N+L  N  I
Sbjct: 1009 KPLSLEDVKVGDTHVAFVNNSSPQHLWVNLS-PSVRGRINAMEASDDLSQLNDLEANFPI 1067

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
                G  L+  V ++D     + LS+     S  VT     +  ++++PG     RV  +
Sbjct: 1068 ----GSALKVRVTAVDVRNNRLDLSARSSNSSDAVT--WSALKQNMVLPG-----RVTKV 1116

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLT 390
             E  V++      +G V +  + + F T N     NQ K   V   ++ +D +++ + L+
Sbjct: 1117 NERQVLVKLSEAVSGPVHLPDMTDDFDTIN---TLNQRKGDIVRVSVVELDSSNKRLRLS 1173

Query: 391  LNP-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 441
              P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V 
Sbjct: 1174 TRPSRIMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVK 1228

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKP 498
            IS++++  +++ +  ++    V+ R++    L       LK+S  +       T++D++ 
Sbjct: 1229 ISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE 1288

Query: 499  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            G VV GKV  V+ FGA +   G   V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1289 GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSV 1348

Query: 557  KSKRITVT 564
             +++  VT
Sbjct: 1349 DAEKRRVT 1356



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 141/321 (43%), Gaps = 35/321 (10%)

Query: 543  FKVGAELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            F +G+ L  RV  + V++ R+ ++ + +   S  A+  +++     ++  G +TK+ +  
Sbjct: 1065 FPIGSALKVRVTAVDVRNNRLDLSARSS--NSSDAV--TWSALKQNMVLPGRVTKVNERQ 1120

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
              V+    V G     ++  D     +     G +V+  ++    +++R+ LS   +P+R
Sbjct: 1121 VLVKLSEAVSGPVHLPDMTDDFDTINTLNQRKGDIVRVSVVELDSSNKRLRLS--TRPSR 1178

Query: 661  VSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
            +    L            +  G +V G V  V+   +  +V+  G     +   +L+D  
Sbjct: 1179 IMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGL--FVLLGGQVTALVKISNLSDRY 1236

Query: 709  EHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
                 +K   K  ++ DQL+      +D  + ++ +S K S+++     P+  + I    
Sbjct: 1237 -----IKE-WKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQ 1290

Query: 764  VVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            VV G V  + E G F+   G   ++G   RS+  +    D +K Y  G +V++ +L V++
Sbjct: 1291 VVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVDA 1350

Query: 822  ETGRITLSLKQSCCSSTDASF 842
            E  R+T  LK S     D+  
Sbjct: 1351 EKRRVTFGLKPSLFEDVDSDM 1371



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 164/377 (43%), Gaps = 37/377 (9%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD-NEIEANEDNLLP 184
            ++L+++  G      V   + + L + L   +RG   A +A D +   N++EAN      
Sbjct: 1011 LSLEDVKVGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQLNDLEAN------ 1064

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     +   ++ LS R S     ++   +++ MVL   V  + 
Sbjct: 1065 --FPIGSALKVRVTAVD-----VRNNRLDLSARSSNSSDAVTWSALKQNMVLPGRVTKVN 1117

Query: 245  DHGYILHFG--------LPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
            +   ++           LP  T     ++    + ++ + G +++  V  +D + K + L
Sbjct: 1118 ERQVLVKLSEAVSGPVHLPDMT-----DDFDTINTLNQRKGDIVRVSVVELDSSNKRLRL 1172

Query: 297  SSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            S+ P  +  S    KD +   +  L  G +V   V+++ + G+ +      T  V I +L
Sbjct: 1173 STRPSRIMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNL 1232

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL-HNRAPPS---HVKVGDI 410
             + +    WK+ +   + V  R++ VD  +R V ++L   ++  +  PP+    ++ G +
Sbjct: 1233 SDRY-IKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQV 1291

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
                KV +V+     +L   S  VS   +   S +AE+ V+   K YKEG  V+ R+L  
Sbjct: 1292 V-TGKVRKVEEFGAFILIDGSDNVSGLCHR--SQMAEQAVKDATKLYKEGDAVKARVLSV 1348

Query: 471  RHLEGLATGILKASAFE 487
               +   T  LK S FE
Sbjct: 1349 DAEKRRVTFGLKPSLFE 1365



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 109/237 (45%), Gaps = 33/237 (13%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            G +V   I K++    GV GL+V++   + G V    L ++ +  P     E +F     
Sbjct: 537  GAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHP-----EKKFR---- 587

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
              +G  VK +VL  +   +    + L+L+ ++              V++    ++  +++
Sbjct: 588  --QGMKVKARVLSTNLDKK---QMRLTLKKTI--------------VNSEAPVVKSYDEV 628

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            +  M + G +  V S G  I     +   + +S +S+ Y++ P++ F IG++V+  VL V
Sbjct: 629  TVGMQIPGTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDV 688

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            +P  KR+ V+ K  D       + N L  L + D+V  ++ +     +F+ + ++ L
Sbjct: 689  QPEDKRLVVSCK--DPSAFGLEKQNALKKLQLSDVVSAKVTQKTEDQVFVELADSQL 743



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 38/223 (17%)

Query: 730  LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            LD+ +  L LS + S I S+  LP      SD S +    +V G+V N+ + G FV   G
Sbjct: 1163 LDSSNKRLRLSTRPSRIMSST-LPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGG 1221

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            ++T     S   D    +    + V Q V+  ++ V+  T  + +SLK        +S +
Sbjct: 1222 QVTALVKISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLK--------SSVV 1273

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
             E +        +Q                 G V+ GKV +  +FG  +  +   +V G 
Sbjct: 1274 DEDYTPPTTYNDIQE----------------GQVVTGKVRKVEEFGAFILIDGSDNVSGL 1317

Query: 904  ITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLK 939
                Q+A   V       + G  ++A +L V   +R V   LK
Sbjct: 1318 CHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRVTFGLK 1360



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 22/181 (12%)

Query: 667 VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
           V LG++V+  ++  VV    V  ++  +A+G S G +P +HL+D  L+H         P 
Sbjct: 534 VPLGAVVTCEIEKVVVDERGVSGLIVKVAEGIS-GFVPEQHLSDVRLQH---------PE 583

Query: 722 YEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
            +F Q       +L  + +   + L+ K +++NS   +      +     + G +  ++ 
Sbjct: 584 KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 643

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           +G  ++F G + GF P S+  +    D  + + +GQ V  ++LDV  E  R+ +S K   
Sbjct: 644 SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 703

Query: 835 C 835
            
Sbjct: 704 A 704



 Score = 47.4 bits (111), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 135/315 (42%), Gaps = 35/315 (11%)

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
            +S+S  A   S+     ++   +T++   ++ +K      G +H+ ++ DD  + +  L 
Sbjct: 1091 SSNSSDAVTWSALKQNMVLPGRVTKVNERQVLVKLSEAVSGPVHLPDMTDD-FDTINTL- 1148

Query: 1109 SNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIG 1164
             N + G  V   ++    SNK          LS +PS +  S   I  K + +   +  G
Sbjct: 1149 -NQRKGDIVRVSVVELDSSNK-------RLRLSTRPSRIMSSTLPIKDKEISDVSQLDAG 1200

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
              V G+V  V ++   + +   + A + I  S      ++E++  F + + V G V++++
Sbjct: 1201 DIVRGFVKNVSDKGLFVLLGGQVTALVKI--SNLSDRYIKEWKDHFQVDQLVKGRVVAVD 1258

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
            K   L R V    +  + D+  D +       I EG +V G++ K+      +++    +
Sbjct: 1259 K---LTRHVEMSLKSSVVDE--DYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDN 1313

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI-SRTVRGTFHVELS 1343
            + G  H +++    V            D    Y EG  VK +VL + +   R TF ++ S
Sbjct: 1314 VSGLCHRSQMAEQAVK-----------DATKLYKEGDAVKARVLSVDAEKRRVTFGLKPS 1362

Query: 1344 LRSSLDGMSSTNSSD 1358
            L   +D  S  ++SD
Sbjct: 1363 LFEDVD--SDMDNSD 1375



 Score = 40.4 bits (93), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 43/239 (17%)

Query: 1086 GFHGRIHITEVNDDKSNVVENLFSN---FKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
            G  G +HI+ V D K   VE L+ +   +K G     R++   N+ D     L+++S + 
Sbjct: 470  GLSGFVHISRVKDGK---VEALYESSGPYKAGSEHKGRVVG-YNEIDG----LFQISFEK 521

Query: 1143 SMLTVS-------EIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            S+L           +G+ +  E   V + +R V+G + KV    +     +HL       
Sbjct: 522  SVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHL------- 574

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                    LQ  +++F  G  V   VLS N +KK +RL L+        KT+  S   + 
Sbjct: 575  ----SDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLK--------KTIVNSEAPVV 622

Query: 1255 TFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
                E   G  + G I K+LS   G ++Q    + G +  +E+    + DP   +  GQ
Sbjct: 623  KSYDEVTVGMQIPGTIIKVLS--SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQ 679


>gi|151945933|gb|EDN64165.1| U3 snoRNP protein [Saccharomyces cerevisiae YJM789]
          Length = 1729

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 315/1351 (23%), Positives = 579/1351 (42%), Gaps = 195/1351 (14%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALDP----ILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALKSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG----VVDVV--TPNAVVVYVIA 691
                  RRI     +   +VS +   +    + ++V G     VDV+  T ++V+V +  
Sbjct: 663  DVDADRRRI-----IATCKVSNEQAAQQKDTIENIVPGRTIITVDVIEKTKDSVIVEIPD 717

Query: 692  KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSA 749
             G  +G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A
Sbjct: 718  VGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDA 776

Query: 750  QQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            ++  LP    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK
Sbjct: 777  KKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISK 836

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
             +Y+ QSV   +L  + +  +  LSLK                 +E+ +          S
Sbjct: 837  AFYINQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DS 884

Query: 865  ELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATV 914
             +K  +   IGS+++ K+   + N   V+++   H         D Y  IT  +   ++ 
Sbjct: 885  SIKSWDDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSSY 944

Query: 915  ESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
            +   VI+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + 
Sbjct: 945  KKDDVIKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIG 1003

Query: 972  QTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP- 1029
            Q +   V     N+L L++ P     I    ++D N   F +    N +SV     AL  
Sbjct: 1004 QELTGFVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQV 1058

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
              ++  R    + AI ++    +      S+  VG  +   + +I    + L  G    G
Sbjct: 1059 KVASIDREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTG 1113

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTV 1147
               IT+  +D S  ++  F + KI   +   +++  + NK         ELS++ +    
Sbjct: 1114 ISFITDALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKT 1165

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
              I S       D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E++
Sbjct: 1166 RSIKS-----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWK 1218

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + +   + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTI 1272

Query: 1268 SKILSGVGGLVVQIGP--HLYGRVHFTELKN 1296
              +     G+ V++    ++ G  H TE+ +
Sbjct: 1273 KNVTD--FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 223/858 (25%), Positives = 367/858 (42%), Gaps = 156/858 (18%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVDVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     S++K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSSYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1305 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKINN-----VIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1473
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1474 GQIKRVESYGLFITIENT 1491
            G IK V  +G+F+ ++NT
Sbjct: 1270 GTIKNVTDFGVFVKLDNT 1287



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 154/368 (41%), Gaps = 59/368 (16%)

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
               RI + ++ D+ SN  EN+ S F +G  +  ++ +     D +  F            
Sbjct: 1026 LKARISLLDLADNDSNFSENIESVFPLGSALQVKVAS----IDREHGF------------ 1069

Query: 1147 VSEIG-SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
            V+ IG S +      + +G  + G V K+  ++ LL +   +    FI D+  + S   +
Sbjct: 1070 VNAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLK 1129

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFIHEGDIVG 1264
                  I   +   VLS++++ K + L LR      + KT  I S+++++    +G+IV 
Sbjct: 1130 EAFEDKINNVIPTTVLSVDEQNKKIELSLR----SATAKTRSIKSHEDLK----QGEIVD 1181

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1324
            G +  +     G+ V +   +   V  ++L +  + +    Y   Q      Y  G+ V 
Sbjct: 1182 GIVKNV--NDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQ------YVLGKVVT 1233

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
            C   E SR       + L+LR S              +++   K L+   D+    + +G
Sbjct: 1234 CD--EDSR-------ISLTLRES--------------EINGDLKVLKTYSDIKAGDVFEG 1270

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVL--LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
             +KNVT  G F+ L   ++   L  ++ ++D   E     F +G  V   VL   P  K+
Sbjct: 1271 TIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQ 1330

Query: 1443 VEVTLKTS 1450
            + ++LK S
Sbjct: 1331 ISLSLKAS 1338



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 37/330 (11%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 278
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 394
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L   
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRSA 1161

Query: 395  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKNV 1275

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|239614080|gb|EEQ91067.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ER-3]
 gi|327358030|gb|EGE86887.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1811

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 209/855 (24%), Positives = 358/855 (41%), Gaps = 79/855 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE---AVERGLHKKNKKKKKKTERKA--- 100
           D+ P FPRGG   LT  E+ +I   A  D  FE   A  +G      +K+KK+ + +   
Sbjct: 67  DEEPAFPRGGASVLTPLEQKQIQIQATRDVLFEQKGAPFQGHADDEDEKEKKSSKVSGGK 126

Query: 101 ---------NETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVI 151
                      TV +  +  G  I G        +  K I  G K+ G V+ +N  D+ +
Sbjct: 127 CKKGKTKAKRNTVSEAPAKEGVRIEG--------LNFKRIVIGSKVLGQVSSINAHDIGL 178

Query: 152 CLPGGLRG---LARAADALDPILDNEIEANEDNLLP--------------TIFHVGQLVS 194
            LP  L G   +   +  L   ++N +++N++                  + F +GQ + 
Sbjct: 179 SLPNNLTGYIPITAVSRTLQQKIENLLKSNQEENDNSDDDEEEEEDLDLNSYFKLGQYLR 238

Query: 195 CIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
             VL  + +    K  GK+ I LS+       GLS   +     + A V S+EDHG ++ 
Sbjct: 239 ASVLSTETEVNHGKTKGKKHIRLSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMD 298

Query: 252 FGLP--SFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
            GL      GF+    +  +  +  +K G +   VV   +    VV LS++  T      
Sbjct: 299 LGLQDGQTKGFMSSKEIPHDLEVSQIKEGSVFLCVVTGHNADGSVVKLSANLPTAGSIKK 358

Query: 309 KDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
                   +I+  +PG      +  +   G+    +      VD+     T    +    
Sbjct: 359 SHFLTSAPTINSFLPGTAAEILLTEVTSTGMAGKIMGMLNAVVDLVQSGTTTGKEDITTK 418

Query: 367 YNQHKKVNARILFVDPTSRAVGL---------TLNPYLLHNRAPPSHV-KVGDIYDQSKV 416
           Y+   K+  R++   PT   + L            P +L  +        +  I  + KV
Sbjct: 419 YHVGAKIKGRLICTFPTVEPMKLGFSILDHVVKFTPTVLEQKPSSEDTPAISAIIPEVKV 478

Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
            +V+ GLG+ +              +SD   + +   +  YK  S    RI+GF  L+ L
Sbjct: 479 TKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEARIVGFSALDNL 538

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHM 531
               L+    +       DV  G VV+GK+    I  D   G IV    G+  L    HM
Sbjct: 539 YLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVSLADGISGLVAGMHM 598

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
           S+ ++  P KKF+ GA++  R+L V    +++ +T KK+L+ S+      Y        +
Sbjct: 599 SDTKLQHPEKKFREGAQVSARILSVNLDKRQLRLTLKKSLLNSESPAWKDYNGILPGNQS 658

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G I  I+ HG  V+FY  V+GF P SE+      +P+  ++VGQVV    ++     R+
Sbjct: 659 PGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHALNVDVELRK 718

Query: 650 INLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
           + +S    P+  +E      + +  G +VSG V   +   +++ +   G     +  EH+
Sbjct: 719 LVVS-CKDPSSFTEAYKSAFENIHPGDIVSGTVFEKSSEDILLKLEDTGLV-ARLNAEHV 776

Query: 705 AD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHI 759
           AD       V  + I+ G + ++LL+L+ + ++ L+  + K SL  + Q  +LP+    +
Sbjct: 777 ADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIKVTNKPSLKQARQRGELPARFEDL 836

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
              + V G+V NI   G FV FLG +TGFAP+    D         Y++ Q +  ++  +
Sbjct: 837 KEGAKVTGFVKNITVDGLFVEFLGGITGFAPKRLVDDDHVNKPDFGYFLSQPISLSVESI 896

Query: 820 NSETGRITLSLKQSC 834
             +  R  L +K+  
Sbjct: 897 EDDRQRFILRMKEQV 911



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 216/970 (22%), Positives = 416/970 (42%), Gaps = 151/970 (15%)

Query: 583  ATDRLITHGWITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKC 638
            A   +I    +TK+E   G +V+F +   GFA  S L    +D        Y V    + 
Sbjct: 468  AISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEA 527

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYV 689
            RI+     S   NL  +    +V +   ++L     G++V G ++  ++  + +  ++  
Sbjct: 528  RIVG---FSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVS 584

Query: 690  IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 747
            +A G S G +   H++D  L+H    +   + G +   ++L ++ +   L L+ K SL+N
Sbjct: 585  LADGIS-GLVAGMHMSDTKLQHP---EKKFREGAQVSARILSVNLDKRQLRLTLKKSLLN 640

Query: 748  SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
            S      D + I P +   G + +I   G  V+F G + GF P S+  +    D ++ + 
Sbjct: 641  SESPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFN 700

Query: 808  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
            VGQ V  + L+V+ E  ++ +S K       D S   E +    K A             
Sbjct: 701  VGQVVNVHALNVDVELRKLVVSCK-------DPSSFTEAY----KSAF------------ 737

Query: 868  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI------- 920
              E    G ++ G V E +   +++  E+   V      H   G T  +G  +       
Sbjct: 738  --ENIHPGDIVSGTVFEKSSEDILLKLEDTGLVARLNAEHVADGQTSRNGVALARIRVGQ 795

Query: 921  ---QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
               +  IL++ KA RL+ ++ K           S +QA+++       +DL     V   
Sbjct: 796  KLNELLILNIQKAHRLIKVTNKP----------SLKQARQRGELPARFEDLKEGAKVTGF 845

Query: 978  VEIVKENYLVLSLPEYNHSI-GYAS---VSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            V+ +  + L +   E+   I G+A    V D +  K P   +   Q +  +V ++     
Sbjct: 846  VKNITVDGLFV---EFLGGITGFAPKRLVDDDHVNK-PDFGYFLSQPISLSVESIEDDRQ 901

Query: 1034 AGRLLLLLKAISETETSSS-----------------KRAKKKSSYDVGSLVQAEITEIKP 1076
              R +L +K     + +S                  +  K       G + +A++  +K 
Sbjct: 902  --RFILRMKEQVNKQRASDGVKPANNVNQSSINPIDENIKSLDDLTFGRVTKAKVVSVKE 959

Query: 1077 LELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII----AKSNK--- 1127
             ++ ++      GRI ++EV D  D     +     FK  Q +  R++    A+S+K   
Sbjct: 960  TQINVQLAENIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQIIPVRVLGIHDARSHKFLP 1019

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                  K  ++ELS KPS L  +++    L +   V IG    G+V  + ++   + IS 
Sbjct: 1020 ISHRTGKYPVFELSAKPSSLQSTDLEPLSLDK---VKIGSSWVGFVNNIGDDCLWINISP 1076

Query: 1186 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----PFQDGI 1241
            +++ +L   D + + S + +  + F +G A+  HV  ++ +K  L L  R    P +  I
Sbjct: 1077 NVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLDLSARHGGLPNRKSI 1136

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
            SD               +G+I+ G+++++       +VQ+     G ++  ++ +     
Sbjct: 1137 SD-------------FSKGEILLGQVTRVTERQA--LVQLSNSTVGAINLIDMAD----- 1176

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
                 D  + +P + + + + ++  +++I    +    + LS+R S           LS+
Sbjct: 1177 -----DFSKVNP-ADFHKNEVIRVCIIDIDVPNK---KILLSVRPS---------RVLSS 1218

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
             +      +  I  L  N IV+G+V+ V + G F+ L   + A + +S+LSD Y++  + 
Sbjct: 1219 SLPIQDPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQN 1278

Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1481
            EF + +LV GR++  +  S +++++LK S      ++ I  + +L  G IV G+++ VE 
Sbjct: 1279 EFQVDQLVRGRIILADAESNKLQMSLKESVLEPNYKTPI-TIKDLKRGQIVTGKVRNVEE 1337

Query: 1482 YGLFITIENT 1491
            +G FI I+ T
Sbjct: 1338 FGAFIVIDGT 1347



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 33/238 (13%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            G +V G+I K+L    G+ GL+V +   + G V    + +  +  P     E +F     
Sbjct: 561  GAVVRGKIEKLLIGTDGISGLIVSLADGISGLVAGMHMSDTKLQHP-----EKKFR---- 611

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
              EG  V  ++L ++   R    + L+L+ SL    S    D +  +  PG         
Sbjct: 612  --EGAQVSARILSVNLDKR---QLRLTLKKSLLNSESPAWKDYNGIL--PGNQ------- 657

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            SP  I+     ++ S G  +    ++   + +S +S+ Y++ P + F +G++V    L+V
Sbjct: 658  SPGTII-----SIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHALNV 712

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            +   +++ V+ K  D  + +++  +   N+H GDIV G +    S  + + +E+T LV
Sbjct: 713  DVELRKLVVSCK--DPSSFTEAYKSAFENIHPGDIVSGTVFEKSSEDILLKLEDTGLV 768



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 109/516 (21%), Positives = 204/516 (39%), Gaps = 72/516 (13%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAEL 549
            D+  G V K KV++V      VQ    ++    +  +   ++ +K    P K FK    +
Sbjct: 943  DLTFGRVTKAKVVSVKETQINVQLAENIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQII 1002

Query: 550  VFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDR--------LITHGWITKI 596
              RVLG+   R    + ++H+       +L+   S  ++TD          I   W+  +
Sbjct: 1003 PVRVLGIHDARSHKFLPISHRTGKYPVFELSAKPSSLQSTDLEPLSLDKVKIGSSWVGFV 1062

Query: 597  EKHG--C-FVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPASRRIN 651
               G  C ++     V+G    ++L  D     + +  + VG  +K  +        R++
Sbjct: 1063 NNIGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLD 1122

Query: 652  LSFMMK--PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
            LS      P R S  D  K G ++ G V  VT    +V +     S  T+   +L D  +
Sbjct: 1123 LSARHGGLPNRKSISDFSK-GEILLGQVTRVTERQALVQL-----SNSTVGAINLIDMAD 1176

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQLP------SDASHIHP 761
              + +        E  ++ ++D +  N  +LLS + S + S+  LP      +  S +  
Sbjct: 1177 DFSKVNPADFHKNEVIRVCIIDIDVPNKKILLSVRPSRVLSSS-LPIQDPEINSISQLKV 1235

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            N +V G+V  +   G FV     +T +   S   D    +    + V Q VR  I+  ++
Sbjct: 1236 NDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVRGRIILADA 1295

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E+ ++ +SLK+S         ++ ++     I  L+                 G ++ GK
Sbjct: 1296 ESNKLQMSLKESV--------LEPNYKTPITIKDLKR----------------GQIVTGK 1331

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLV 934
            V    +FG  +  +  +++ G     ++A   VE        G +++A I+ +   +  +
Sbjct: 1332 VRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERI 1391

Query: 935  DLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLG 969
             L LK + F D   E+N        +     S+D G
Sbjct: 1392 SLGLKASYFKDSDDESNDESADDVSEENMSESEDDG 1427



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 157/767 (20%), Positives = 309/767 (40%), Gaps = 135/767 (17%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKT---YYVGQSVRSNILDVNSETGRITLSLKQ 832
            G +V+F  +  GFA  S+  D +   +S T   Y V  +  + I+  ++      LSL++
Sbjct: 486  GVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEARIVGFSALDNLYLLSLER 545

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE-----SND 887
                  D  F++                        +E   +G+V+ GK+ +        
Sbjct: 546  KVI---DQPFLR------------------------LEDVTVGAVVRGKIEKLLIGTDGI 578

Query: 888  FGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKT 940
             G++VS  +   + G +    ++   ++        G+ + A IL V   +R + L+LK 
Sbjct: 579  SGLIVSLADG--ISGLVAGMHMSDTKLQHPEKKFREGAQVSARILSVNLDKRQLRLTLKK 636

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
              +      NS   A K     + +  L  +Q+   I+ I     +V     Y    G+ 
Sbjct: 637  SLL------NSESPAWK-----DYNGILPGNQSPGTIISIQSHGAIVQF---YGEVRGFL 682

Query: 1001 SVSDYNTQ--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK 1058
             VS+ +    K P + F  GQ  +  V AL       +L++  K     + SS   A K 
Sbjct: 683  PVSEMSEAYIKDPAQHFNVGQ--VVNVHALNVDVELRKLVVSCK-----DPSSFTEAYKS 735

Query: 1059 SSYDV--GSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
            +  ++  G +V   + E    ++ LK    G   R++   V D +++      +  ++GQ
Sbjct: 736  AFENIHPGDIVSGTVFEKSSEDILLKLEDTGLVARLNAEHVADGQTSRNGVALARIRVGQ 795

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKV 1174
             +   +I    K       L +++ KPS+    + G     FE  D+  G +VTG+V  +
Sbjct: 796  KLNELLILNIQKAHR----LIKVTNKPSLKQARQRGELPARFE--DLKEGAKVTGFVKNI 849

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI----------- 1223
              +   +     +        + + P  L +     H+ K   G+ LS            
Sbjct: 850  TVDGLFVEFLGGI--------TGFAPKRLVDDD---HVNKPDFGYFLSQPISLSVESIED 898

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEG-----DIVGGRISK---ILSG 1273
            ++++ +LR+  +  +   SD     +N N  +   I E      D+  GR++K   +   
Sbjct: 899  DRQRFILRMKEQVNKQRASDGVKPANNVNQSSINPIDENIKSLDDLTFGRVTKAKVVSVK 958

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD--EGQFDPLSGYDEGQFVKCKVLEIS 1331
               + VQ+  ++ GR+  +E+           +D  + +  PL  +   Q +  +VL I 
Sbjct: 959  ETQINVQLAENIQGRIDVSEV--------FDSWDAIKDRKQPLKYFKAKQIIPVRVLGI- 1009

Query: 1332 RTVRGTFHVELSLRSS---LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
               R    + +S R+    +  +S+  SS  STD++     L+K++  S  +   G+V N
Sbjct: 1010 HDARSHKFLPISHRTGKYPVFELSAKPSSLQSTDLEP--LSLDKVKIGSSWV---GFVNN 1064

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
            +     +I +S  +  ++  ++LSD    V    K FP+G  +   V  V+    R++++
Sbjct: 1065 IGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLDLS 1124

Query: 1447 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
                 +R        ++S+   G+I++GQ+ RV      + + N+ +
Sbjct: 1125 -----ARHGGLPNRKSISDFSKGEILLGQVTRVTERQALVQLSNSTV 1166



 Score = 45.1 bits (105), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 142/327 (43%), Gaps = 42/327 (12%)

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
            K  S +  G ++  ++T +   +  ++      G I++ ++ DD S V     ++F   +
Sbjct: 1134 KSISDFSKGEILLGQVTRVTERQALVQLSNSTVGAINLIDMADDFSKVNP---ADFHKNE 1190

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV-SIGQR-----VTG 1169
             +   II   + P+ K      LS++PS +    + S L  ++ ++ SI Q      V G
Sbjct: 1191 VIRVCII-DIDVPNKK----ILLSVRPSRV----LSSSLPIQDPEINSISQLKVNDIVRG 1241

Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1229
            +V +V N    +T+   + A + I D     S L+E+Q  F + + V G ++  + E   
Sbjct: 1242 FVRRVANNGLFVTLGHDVTAYIRISD--LSDSYLKEWQNEFQVDQLVRGRIILADAESNK 1299

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            L++ L+      + KT     D     +  G IV G++  +      +V+    +L G  
Sbjct: 1300 LQMSLKESVLEPNYKTPITIKD-----LKRGQIVTGKVRNVEEFGAFIVIDGTANLSGLC 1354

Query: 1290 HFTELKNICVSDPLSGYDEGQF-DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348
            H TE+             EG+  D    +++G  VK K+++I         + L L++S 
Sbjct: 1355 HRTEMA------------EGKVEDARKVFEKGDIVKAKIIKIDLNKE---RISLGLKASY 1399

Query: 1349 DGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               S   S+D S D D   +++ + ED
Sbjct: 1400 FKDSDDESNDESAD-DVSEENMSESED 1425



 Score = 44.3 bits (103), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 156/374 (41%), Gaps = 31/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            ++L  +  G    G V  + +  L I +   +RG  R  D  D + L  +I  N      
Sbjct: 1047 LSLDKVKIGSSWVGFVNNIGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKN------ 1100

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F VG  +   V  +D DK      ++ LS R   L    S+    +G +L   V  + 
Sbjct: 1101 --FPVGSALKIHVTGVDADKN-----RLDLSARHGGLPNRKSISDFSKGEILLGQVTRVT 1153

Query: 245  DHGYILHFGLPSFTGFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
            +   ++     S  G +   ++A++    +  D     +++  +  ID   K + LS  P
Sbjct: 1154 ERQALVQLS-NSTVGAINLIDMADDFSKVNPADFHKNEVIRVCIIDIDVPNKKILLSVRP 1212

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   V+ +  NG+ ++     T  + I  L +++
Sbjct: 1213 SRVLSSSLPIQDPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSY 1272

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-NRAPP---SHVKVGDIYDQS 414
                W+N++   + V  RI+  D  S  + ++L   +L  N   P     +K G I    
Sbjct: 1273 -LKEWQNEFQVDQLVRGRIILADAESNKLQMSLKESVLEPNYKTPITIKDLKRGQIV-TG 1330

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HL 473
            KV  V+   G  + I  T  +       +++AE +V    K +++G  V+ +I+    + 
Sbjct: 1331 KVRNVEE-FGAFIVIDGT-ANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNK 1388

Query: 474  EGLATGILKASAFE 487
            E ++ G LKAS F+
Sbjct: 1389 ERISLG-LKASYFK 1401


>gi|6323885|ref|NP_013956.1| Rrp5p [Saccharomyces cerevisiae S288c]
 gi|2498865|sp|Q05022.1|RRP5_YEAST RecName: Full=rRNA biogenesis protein RRP5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein RRP5; Short=U3
            snoRNA-associated protein RRP5
 gi|887610|emb|CAA90200.1| Rrp5p [Saccharomyces cerevisiae]
 gi|285814233|tpg|DAA10128.1| TPA: Rrp5p [Saccharomyces cerevisiae S288c]
 gi|392297399|gb|EIW08499.1| Rrp5p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1729

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 312/1346 (23%), Positives = 578/1346 (42%), Gaps = 185/1346 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALDP----ILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNIYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   I   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  VG  +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++P+      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRPATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKSVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKN 1296
               G+ V++    ++ G  H TE+ +
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 222/858 (25%), Positives = 366/858 (42%), Gaps = 156/858 (18%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      +      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1305 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             +     E   D ++       +   VL +    +    +ELSLR +     S  S    
Sbjct: 1123 DFSLTLKEAFEDKINN-----VIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH--- 1171

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1473
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1474 GQIKRVESYGLFITIENT 1491
            G IK V  +G+F+ ++NT
Sbjct: 1270 GTIKSVTDFGVFVKLDNT 1287



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 632  VGQVVKCRIMSSIPASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVV 687
            +  V+   ++S    +++I LS      +     S +DL K G +V G+V  V    + V
Sbjct: 1136 INNVIPTTVLSVDEQNKKIELSLRPATAKTRSIKSHEDL-KQGEIVDGIVKNVNDKGIFV 1194

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLI 746
            Y+  K   +  +P   L+D   +    K   KP  Y   +++  D E S + L+ + S I
Sbjct: 1195 YLSRK--VEAFVPVSKLSDS--YLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEI 1249

Query: 747  NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSK 804
            N   ++    S I    V  G + ++ + G FV+      +TG A  ++  D +  DLS 
Sbjct: 1250 NGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSA 1309

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
             + VG  V++ +L  N E  +I+LSLK S  S
Sbjct: 1310 LFGVGDRVKAIVLKTNPEKKQISLSLKASHFS 1341



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 37/330 (11%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 278
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 394
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L P 
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRPA 1161

Query: 395  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G + +V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSV 1275

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|406693939|gb|EKC97279.1| rRNA processing-related protein [Trichosporon asahii var. asahii
           CBS 8904]
          Length = 1499

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 212/846 (25%), Positives = 370/846 (43%), Gaps = 89/846 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAE----VDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS 109
           FPRGGG SLT  E  +  AE     DAE     +      ++ +K  + KA    D    
Sbjct: 41  FPRGGGTSLTALEVKQTRAEGARQADAEMGKTLKKKKLSTRQMQKAKKEKATAESD---- 96

Query: 110 LFGDGISGKLPRYANKITLKNIS-----AGMKLWGVVAEVNEKDLVICLPGGLRG---LA 161
                 + K  R  + I ++ +S      G  +   V  V    LV+ +P  L G   + 
Sbjct: 97  ------AAKAERDKDTIRVEELSYKRLVPGTLVLARVHTVLPLHLVVSMPNNLLGHIPIT 150

Query: 162 RAADALDPILDNEIEANEDNL------------LPTIFHVGQLVSCIVLQLDDDKKE--I 207
             ++ L   L+ +I+A  ++             L  IF  GQ +   V+       +  I
Sbjct: 151 EVSNTLTAALNADIDAMSEDEDEEDEEKEGAPELTDIFRPGQYIPTRVINTFPTASQAFI 210

Query: 208 GKRKIWLSLRLSLLYK----------GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
            +  +  + RL+   +           ++ + V++G  +   V   ED GY +  GL + 
Sbjct: 211 AQYPVSETTRLAARVELTAVPEKINLDVAKQDVEKGYRIVGEVLGAEDKGYRVGLGLSAD 270

Query: 258 TG------FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL 311
           TG      F+P   + +N+G  + PG L+  VV  +    +VV L+ DP T+      ++
Sbjct: 271 TGLAGVEGFIPIEEVEKNAGGALIPGQLIPTVVSEVKAGGRVVKLTLDPQTLIHSSLTEV 330

Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
             I    L+PG + S  V +++ +G+ +    ++ GT+DI HL       + ++ YN  K
Sbjct: 331 SNIGS--LLPGQLASCLVTAVVPSGLNVKICGFYDGTIDIAHL--GLGEDDIEDRYNIGK 386

Query: 372 KVNARILF--VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVD 420
           K+ ARIL+  V  + R   L+  P++ +  +P +          + VG      KV+RV 
Sbjct: 387 KIKARILYDTVASSERRFALSALPHIFNLASPVAADGETPLEIAIPVGKTLPSVKVIRVI 446

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLA 477
              G++     T      +  IS +++E V  L     ++K G+  R R++G   L+G+ 
Sbjct: 447 PDWGVVC---RTDDGLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHSPLDGVM 503

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
               +      +     ++  G V+KG V  +   G  V   G V  +    H ++  + 
Sbjct: 504 LLSFEEKVLNQVFMQVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLK 563

Query: 538 KPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
            P K+FKVGA +  RV  ++    R+ +T KK+LV+S L +  S+A+ T   IT   ++K
Sbjct: 564 HPEKRFKVGASVKARVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVTAGEITPAVVSK 623

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           I   GC V  + G++ F P+SE   +     + ++ VG+ V  RI      S+++  S  
Sbjct: 624 ILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVDEHSQKLVASVR 683

Query: 656 MK-PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-V 713
              PT V+ + L ++GS VSG+V  +    VVV +I    +   +   +L++H       
Sbjct: 684 QALPTAVAAEKL-EVGSDVSGIVAQIHAEQVVVTLIPSQLT-ALLSLANLSNHRGMGVDE 741

Query: 714 MKSVIKPGYEFDQLLVLD-NESSNLLL----SAKYSLINSAQQLPSDASHIHPNSVVHGY 768
           ++  +K G + + L+V+  N +S L++     AK  +         +   I    V+ G 
Sbjct: 742 LRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAKKGIPTGISTPARNFDAIAVGDVLPGR 801

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNILDVNSETGRIT 827
           V +    G  VR   ++ G    + A D    DLS     V   V   +L V++E+  I 
Sbjct: 802 VISKTPQGAMVRLGKKIRGRVAPTDASD----DLSAPGLKVDDDVLCCVLKVDAESRAID 857

Query: 828 LSLKQS 833
           LS ++S
Sbjct: 858 LSTRKS 863



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 215/504 (42%), Gaps = 87/504 (17%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLV 1067
            K P+K+F  G SV A V A+  +    R++L LK ++ E++               GS  
Sbjct: 563  KHPEKRFKVGASVKARVFAIEPARN--RVVLTLKKSLVESDLPVP-----------GSFA 609

Query: 1068 QAEITEIKPLELRLKFGIG-----FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
                 EI P  +      G     F G       ++  +N V NL   F +G+ V  RI 
Sbjct: 610  DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRIT 669

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
                  D+ +     ++     L  +    KL        +G  V+G V ++  E  ++T
Sbjct: 670  ------DVDEHSQKLVASVRQALPTAVAAEKL-------EVGSDVSGIVAQIHAEQVVVT 716

Query: 1183 -ISRHLKAQLFILD-SAYEPSELQEFQRRFHIGK-----------AVTGHVLSINKEKKL 1229
             I   L A L + + S +    + E ++   +G+           A +G ++  NK  K 
Sbjct: 717  LIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAK- 775

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
                 +    GIS    +         I  GD++ GR+  I     G +V++G  + GRV
Sbjct: 776  -----KGIPTGISTPARNFDA------IAVGDVLPGRV--ISKTPQGAMVRLGKKIRGRV 822

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
              T+      SD LS           G      V C VL++    R    ++LS R S  
Sbjct: 823  APTD-----ASDDLSA---------PGLKVDDDVLCCVLKVDAESRA---IDLSTRKS-- 863

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
                 +S+    D +     +    DL     V+G VKNV   G F+ L R + A+V++ 
Sbjct: 864  -RVQPDSAPAIVDAE-----INSTADLKAGQSVRGIVKNVAPNGLFVALGRSVTARVMIK 917

Query: 1410 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1469
             L D +V+  +  F +G +V+G++LSV     RVE+TL+T   +  +++++  L++   G
Sbjct: 918  ELFDDFVKDWKARFAVGDVVSGKILSVG--DDRVEMTLRTKPRKAGAETKL-TLADFKEG 974

Query: 1470 DIVIGQIKRVESYGLFITIENTNL 1493
              V   +KRVES+GLF+ I+ +++
Sbjct: 975  QKVEATVKRVESFGLFLRIDGSDV 998



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 22/264 (8%)

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLD--PGCEPSS-MYHVGQVVKCRIMSSIPASRR 649
           I  I   G   R  +G++GF   S L  +  P    S+  + VG   + R++   P    
Sbjct: 443 IRVIPDWGVVCRTDDGLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHSPLDGV 502

Query: 650 INLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
           + LSF  K       +V E   + +G ++ G V  ++   + V V  +G   G +   H 
Sbjct: 503 MLLSFEEKVLNQVFMQVGE---LTIGQVLKGTVRKLSDKGLFVNV--QGNVDGVVWPLHY 557

Query: 705 AD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           AD    H E    + + +K      ++  ++   + ++L+ K SL+ S   +P   + + 
Sbjct: 558 ADIRLKHPEKRFKVGASVKA-----RVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVT 612

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
              +    V  I++ GC V   G L  F P+S+A     A+L+  ++VG++V   I DV+
Sbjct: 613 AGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVD 672

Query: 821 SETGRITLSLKQSCCSSTDASFMQ 844
             + ++  S++Q+  ++  A  ++
Sbjct: 673 EHSQKLVASVRQALPTAVAAEKLE 696



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            ++ +L+   +++G V+ ++ KG F+ +   +D  V   + +D  ++ PEK F +G  V  
Sbjct: 518  QVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA 577

Query: 1432 RVLSVEPLSKRVEVTLKTS 1450
            RV ++EP   RV +TLK S
Sbjct: 578  RVFAIEPARNRVVLTLKKS 596



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
            G  G  HI+ ++D++   + N    FK+G    AR+I  S    +    L  LS +  +L
Sbjct: 458  GLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHS---PLDGVML--LSFEEKVL 512

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
                  +++  +  +++IGQ + G V K+ ++   + +  ++   ++ L   Y    L+ 
Sbjct: 513  ------NQVFMQVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLH--YADIRLKH 564

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             ++RF +G +V   V +I   +  + L L+
Sbjct: 565  PEKRFKVGASVKARVFAIEPARNRVVLTLK 594


>gi|150865289|ref|XP_001384440.2| Part of small ribosomal subunit (SSU) processosome (contains U3
           snoRNA) [Scheffersomyces stipitis CBS 6054]
 gi|149386545|gb|ABN66411.2| Part of small ribosomal subunit (SSU) processosome (contains U3
           snoRNA) [Scheffersomyces stipitis CBS 6054]
          Length = 1699

 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 215/861 (24%), Positives = 375/861 (43%), Gaps = 113/861 (13%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKK-----------KKKKTERKA 100
           FPRGG  +LT  E  EI  E   D  FEA        + K            KKK++  A
Sbjct: 18  FPRGGATALTPLEVKEISNEATKDVLFEAANSAKRTASSKTDRPAKKARRAPKKKSQEDA 77

Query: 101 NETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL 160
           +E  +D           K+      IT K++  G  + G +  V + D+ + L   L G 
Sbjct: 78  DEAEED----------SKVQ--IENITFKSLIPGTLVLGQITAVGKLDITLALGDNLVGY 125

Query: 161 ARAADALDPILDNEIEANEDNL-----------------------------------LPT 185
                ++   L  +IE  E                                      L T
Sbjct: 126 IPIT-SISEELTIQIEQYEKAEDSDEESEDEEDEQESEDGKIRTATLKSKSRPEFPELKT 184

Query: 186 IFHVGQLVSCIVLQ--LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
           +F +GQ +   V+Q     ++ +  K++I L++    + + L  E +  G  L   VKS+
Sbjct: 185 LFSIGQWLRAKVVQPSSSQNQNQKQKKRIQLTIEPETVNQPLEDEDLIPGNALQCSVKSV 244

Query: 244 EDHGYILHFGLPSFTGFLPRNNLAENSGIDV---KPG--LLLQGVVRSIDRTRKVVYLSS 298
           EDHG I++ G    +GF+    +     +DV   KPG  LL   V +S  RT  +  + S
Sbjct: 245 EDHGIIMNTGRDGLSGFISNKEIKNTPDLDVEILKPGKVLLTSIVSKSASRTVNLRPIHS 304

Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              +    VT      S+D ++PG++V   V  + +NG+++        T+++  LQ  F
Sbjct: 305 TSVSKKSAVT---SISSVDAVLPGILVDALVADVTKNGLIVKVFGLVDATINLAQLQE-F 360

Query: 359 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLLHNRAPPSHVKVGDIYDQSKV 416
                K+ Y     + AR++ V   + +  L L+  P+ +   +  S+    + +     
Sbjct: 361 DFNALKHKYAIGNNIKARVMAVLTRAGSKKLILSHLPHAISYTSTASNPDALEAF----- 415

Query: 417 VRVDRGLGLLLDIPSTPVSTPAYV-------TISDVAEEEVRK---LEKKYKEGSCVRVR 466
                 +G +L+      S P YV        +  V   ++ K   LE  +  GS    R
Sbjct: 416 -----PIGHVLEDAEVVGSDPNYVFLKFGGSILGQVHNSKIDKDKTLEHDFNLGSKHSAR 470

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVK 523
           ++GF  ++ L    +++          SDV  G  VK  ++I V  ++ G +++     +
Sbjct: 471 VIGFNSIDNLLVLTMESHVINSQYLHASDVPNGTAVKSCEIIKVLPEAGGIVIKVLDEFE 530

Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAE 582
              P  HMS+ ++V P +KFKVG+++  RVL  +  ++ VT KK+LV      +L+ + +
Sbjct: 531 GFVPGSHMSDIKLVYPERKFKVGSKVRGRVLSKQGNKLVVTFKKSLVNIEDDEVLARFED 590

Query: 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
           A     T   + K   +G  V F+  ++ F P++E+        S    +GQ V  R++ 
Sbjct: 591 AKIGFKTPAIVEKFVHNGAIVSFFGNLRAFLPKNEISETFVSNASDYLRLGQTVNVRVLD 650

Query: 643 SIPASRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-K 696
                +R+ ++      +    + S DDL    S+V+  V   T ++V+V +  +G S +
Sbjct: 651 VKQEEKRMLVTLRHSSELTNTQKSSIDDLQPGKSIVTVSVVEKTKDSVIVEL--EGNSLR 708

Query: 697 GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQ-- 751
           G I T HL D + E        +  G +  ++LVL  D ++  +++SAK SLI++A+Q  
Sbjct: 709 GVIYTGHLTDGNYEQNRAYAKKLSIGEKL-EVLVLEKDLKARTVIVSAKKSLIDAAKQDA 767

Query: 752 LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +P+    I   N ++ G+V ++   G FV F G+LTG      A   +  DL K +Y  Q
Sbjct: 768 IPAYFKDIKVDNKMLRGFVKSVTNKGLFVSFAGKLTGLVLAKYATSNENEDLLKKFYKYQ 827

Query: 811 SVRSNILDVNSETGRITLSLK 831
           S+   +++++ E  R  L+LK
Sbjct: 828 SIACRVINIDEENKRFLLTLK 848



 Score =  107 bits (268), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 230/1048 (21%), Positives = 419/1048 (39%), Gaps = 152/1048 (14%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            V PG++V   V  V   G IV+  G V A   L  + EF+      K+ +G  +  RV+ 
Sbjct: 322  VLPGILVDALVADVTKNGLIVKVFGLVDATINLAQLQEFDFNALKHKYAIGNNIKARVMA 381

Query: 556  VKSKRITVTHKKTLVKSKLAILSSY---AEATDRL----ITH----GWITKIEKHGCFVR 604
            V    +T    K L+ S L    SY   A   D L    I H      +   + +  F++
Sbjct: 382  V----LTRAGSKKLILSHLPHAISYTSTASNPDALEAFPIGHVLEDAEVVGSDPNYVFLK 437

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL-SFMMKPTRV 661
            F   + G    S++  D   E    +++G     R++  +SI     + + S ++    +
Sbjct: 438  FGGSILGQVHNSKIDKDKTLEHD--FNLGSKHSARVIGFNSIDNLLVLTMESHVINSQYL 495

Query: 662  SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
               D+    ++ S  +  V P A  + +      +G +P  H++D          ++ P 
Sbjct: 496  HASDVPNGTAVKSCEIIKVLPEAGGIVIKVLDEFEGFVPGSHMSDI--------KLVYPE 547

Query: 722  YEFD-----QLLVLDNESSNLLLSAKYSLINSAQ-----QLPSDASHIHPNSVVHGYVCN 771
             +F      +  VL  + + L+++ K SL+N        +           ++V  +V N
Sbjct: 548  RKFKVGSKVRGRVLSKQGNKLVVTFKKSLVNIEDDEVLARFEDAKIGFKTPAIVEKFVHN 607

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                G  V F G L  F P+++  +   ++ S    +GQ+V   +LDV  E  R+ ++L+
Sbjct: 608  ----GAIVSFFGNLRAFLPKNEISETFVSNASDYLRLGQTVNVRVLDVKQEEKRMLVTLR 663

Query: 832  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
             S                     +  + K +  +L+  +  +  SV+E K  +S    V+
Sbjct: 664  HSS-------------------ELTNTQKSSIDDLQPGKSIVTVSVVE-KTKDS----VI 699

Query: 892  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV---DLSLKTVFIDRFRE 948
            V  E +S + G I    L     E        +    K E LV   DL  +TV +   + 
Sbjct: 700  VELEGNS-LRGVIYTGHLTDGNYEQNRAYAKKLSIGEKLEVLVLEKDLKARTVIVSAKK- 757

Query: 949  ANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
              S   A K+       KD+ V ++ +   V+ V    L +S       +  A  +  N 
Sbjct: 758  --SLIDAAKQDAIPAYFKDIKVDNKMLRGFVKSVTNKGLFVSFAGKLTGLVLAKYATSNE 815

Query: 1008 QKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA--------KKKS 1059
             +   K+F   QS+   V+ +   +   R LL LK ++ ++   S+          K   
Sbjct: 816  NEDLLKKFYKYQSIACRVINIDEENK--RFLLTLKDVNGSKNIDSEAVVNPVDTSKKLIG 873

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTV 1117
             +  G   +A I  +K  +L ++      GRI  TE  +  + + +     S F  GQ +
Sbjct: 874  DFVPGIATKAVIKSVKGTQLNVQLADNLQGRIAATECFNSWNEIKDKKQPLSQFHKGQVI 933

Query: 1118 TARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
              +II   +  + K          K+ + ELS+    L  S    +L F    +  G + 
Sbjct: 934  DVKIIGFHDAKNHKFLPITHTRSNKNIILELSLIKKDLESSTPYQELTF--SSIVPGSQH 991

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
              +V  +   +   ++S +++ ++  ++     S   + +    IG A++  V  ++ E 
Sbjct: 992  IVFVNNIAKGYVWASLSPNIRGRISFMELTDNVSVFDDLENNLPIGSAISATVKEVDNEH 1051

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPH 1284
              + L  R                NM   I +   G     RI K+      ++V++G  
Sbjct: 1052 HSVVLTARK---------------NMVASIKDVKVGQKYPARILKVRDTY--VLVELGEK 1094

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPL-SGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
            +      T        D L  Y     D L S +   +F    VL+I      +  + +S
Sbjct: 1095 VVASAFIT--------DALDNYS----DKLESVFTTNEFATATVLDID---TDSEKIAVS 1139

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
            LR           +D  TD     K +  I DL+   +V+G+VKNV + G ++ L R + 
Sbjct: 1140 LR-----------TDSPTD-----KVINSIADLNRGDVVKGFVKNVANNGVYVSLGRSVH 1183

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
            A V +++LSD Y++  +K F   + + G++ + +    RV +TLK S+  +   + +   
Sbjct: 1184 ALVRVADLSDAYLKDWKKYFKPHQPILGKISACKE-EGRVLMTLKESEV-SGELNVLKRF 1241

Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIENT 1491
             +L VG+I  G +KR   +G+FI ++ T
Sbjct: 1242 DDLVVGEIFEGSVKRATDFGVFIKLDGT 1269



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 32/227 (14%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            EF    VLD ++ +  ++      +   ++ +  + ++   VV G+V N+   G +V   
Sbjct: 1120 EFATATVLDIDTDSEKIAVSLRTDSPTDKVINSIADLNRGDVVKGFVKNVANNGVYVSLG 1179

Query: 783  GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
              +      +   D    D  K +   Q +   I     E GR+ ++LK+S  S      
Sbjct: 1180 RSVHALVRVADLSDAYLKDWKKYFKPHQPILGKI-SACKEEGRVLMTLKESEVSG----- 1233

Query: 843  MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 902
                                 + LK  +  ++G + EG V  + DFGV +  +   ++ G
Sbjct: 1234 -------------------ELNVLKRFDDLVVGEIFEGSVKRATDFGVFIKLDGTLNITG 1274

Query: 903  FITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVF 942
               H Q+A   V++       G  ++  +L +   ++ + L +K  +
Sbjct: 1275 LCHHSQIADKDVDNVTSLFGEGDRVKVKLLAIDSDKKQLSLGMKASY 1321


>gi|402086176|gb|EJT81074.1| hypothetical protein GGTG_01061 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1795

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 320/1395 (22%), Positives = 577/1395 (41%), Gaps = 141/1395 (10%)

Query: 4    SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLA---LPP-----DDDVPVFP 55
            SS+ +  K     P   +A      NSK +   A + +  +    PP      +D P+FP
Sbjct: 14   SSQATPAKRVSGEPPSKRAKSQAASNSKDKTAPAQDDKTTSHANAPPVISRLKEDEPMFP 73

Query: 56   RGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            RGGG  L+  E  +I   A+ D  FE       +   + +K  +    +           
Sbjct: 74   RGGGSVLSPLEHKQIQIQAKKDVLFE------QESGAQARKPGQPTKKKIKTTKPKAGAT 127

Query: 114  GISGKLPRYA--NKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
              + K P       +  K +  G  + G V+++   +L + LP  L G   +   ++ L 
Sbjct: 128  SYTAKDPDAVKVESLNFKRLVKGSLVLGQVSKIGPLELELSLPNNLVGHVPITAVSEHLT 187

Query: 169  PILDNEIEANEDN----------LLPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLS 215
              L+++   +E+            L  +F VGQ V   V    DD        KR+I LS
Sbjct: 188  KKLESDAATSEEEQDDADDGGDSDLTALFSVGQFVRAYVTSTVDDSGSASAKAKRRIELS 247

Query: 216  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGI 272
            L   L   GL    + E   +   + S+EDHGY++  G+      GFLP+  +  N    
Sbjct: 248  LYPELANLGLGESDIVENSTVAGSILSVEDHGYVVSLGIQDSQLRGFLPKKEVDSNIPST 307

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
             + PG +   +V     +  V  LS     +           +I+  +PG  V   V  +
Sbjct: 308  RLVPGCVHMFLVSGRRASGTVSRLSLLSSNLGNLKLYPASAKTINTFLPGTAVEVLVSDV 367

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT--SRAVGLT 390
                +    + +   T D+ H        + +  Y    K+ ARI+   P   S  +G++
Sbjct: 368  SSRSLAGKVIGHLDVTADVIHSGCGPDGLDLEKTYKVGSKIKARIICTFPAADSPKLGIS 427

Query: 391  LNPYLL------------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
            L P++              +  P + +    + ++  V +V+ G+GL +D+    V  P 
Sbjct: 428  LLPHVTGLKPKLVAVQGKEDAHPLTILPSSSMVEECVVRKVEPGIGLFVDVGVEGV--PG 485

Query: 439  YVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
            +V IS V + +V  L +    YK GS  R R++G+  L+G+    L+ S  E       D
Sbjct: 486  FVHISRVKDGKVDALYESSGPYKTGSTHRSRVIGYSALDGVFLVSLEKSVLERPYLRIED 545

Query: 496  VKPGMVV----KGKVIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            V  G VV    +  V+  D   G IV+   G+    P  H+++  +  P KKFK G ++ 
Sbjct: 546  VPVGDVVTVTIEKLVVKEDGVSGLIVRLAEGITGFVPEMHLADVRLQHPEKKFKEGLKVK 605

Query: 551  FRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             RVL   S +  + +T KKTL+ S+   + ++ E +      G I KI   G FV+FY  
Sbjct: 606  ARVLSADSAKHQLRLTLKKTLLNSETKPIKAFDEVSVGQQFPGTIVKIMPIGAFVQFYGA 665

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 666
            ++GF P SE+      +P+  + VGQVV   ++   PA+ R+ +S         E  L  
Sbjct: 666  LRGFMPISEMSEAYIRDPNEHFRVGQVVNVHVVEVDPAAHRLIVSCKDPAAFGMEKRLAL 725

Query: 667  --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV---IKPG 721
              +KLG LVS  V   + + + + ++     K  +   H+ D  + A+  +S    I+ G
Sbjct: 726  QALKLGQLVSAKVAQKSEDEISLELVG-SLLKAVLRCSHMTD--KSASKNQSALNKIRVG 782

Query: 722  YEFDQLLVL--DNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGC 777
               D L+VL  D +   ++LS K SL+ +++  +L +        S+V G++ NI  T  
Sbjct: 783  QTLDGLVVLEKDEDRRAVVLSLKPSLVKASKDGRLLTALQDAKVGSLVQGFIRNITATAV 842

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL------- 830
            FV+F G LT   PRS    G +A       + Q +   +  V+ +  R+ +++       
Sbjct: 843  FVQFAGNLTALLPRSLMTAGMQAQEGFGLRLSQPILVKVHSVDDK--RLVVAMPDAEPPS 900

Query: 831  ---KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE-GFIIGSVIEGKVHESN 886
               K S  S   A+ +       + I + + +K   S +K  +    +G  I+G+V  S 
Sbjct: 901  KTDKPSSASKPIANAIDPTINSTDDITVGKITKARISSVKKTQLNVSLGDNIQGRVDVSE 960

Query: 887  DFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVF-I 943
             F      E+  D       +Q          +I   ++ V  A+  R +  S +T   +
Sbjct: 961  VFDSWDEIEDPKDPLQKFAANQ----------IIDVRVIGVHDARNYRFLPFSHRTAHSV 1010

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 1002
                   S+ +   +  K  A +D+       + V     N L ++L P     I  A V
Sbjct: 1011 LELTAKPSSLRETARGYKPLALEDIKPDSNWLSFVNNNDGNCLWVNLSPAVRGRIRAAEV 1070

Query: 1003 SDYNT-QKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 1061
            SD ++  K  ++ F  G ++   V+ + S +  G L L         ++ S R  ++ ++
Sbjct: 1071 SDDSSLSKDLRQHFPVGSALRTRVVTVKSEN--GHLDL---------SARSARPNERLTW 1119

Query: 1062 D---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
            D     +++ A +T++   ++ ++      G +H+ +++DD        +S   I + V 
Sbjct: 1120 DELEKDTVMHARVTKVNDRQVLIQISDSVSGPVHMVDLSDDYDQANPLRYSKNDIIR-VA 1178

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDN 1176
               + +SNK          LS + S +  S   +  + +     + +G  + G+V  V +
Sbjct: 1179 VVSVDRSNKK-------VRLSARESRVLNSALPVKDREITAVSQIEVGSIIRGFVKNVSD 1231

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
            +   +T+        F+  +    + L+E++  F + + V G VL++N     +++ L+ 
Sbjct: 1232 KGLFVTLG---GVDAFVRIADLSDAYLKEWKDHFQVDQLVKGRVLAVNPATGQVQMSLKA 1288

Query: 1237 FQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                     VD     +  F    +G +V G++ K+      ++V    ++ G  H TE+
Sbjct: 1289 -------SAVDEDYKPLPGFADFKKGQVVTGKVRKVADFGAFILVDKSANVSGLCHRTEM 1341

Query: 1295 KNICVSDPLSGYDEG 1309
             +  V D    Y EG
Sbjct: 1342 ADKPVKDATRLYKEG 1356



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 223/987 (22%), Positives = 419/987 (42%), Gaps = 119/987 (12%)

Query: 544  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCF 602
            K+G  L+  V G+K K + V  K+      L IL S +     ++    + K+E   G F
Sbjct: 423  KLGISLLPHVTGLKPKLVAVQGKED--AHPLTILPSSS-----MVEECVVRKVEPGIGLF 475

Query: 603  VRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SF 654
            V     GV GF   S +    +D   E S  Y  G   + R++  S++     ++L  S 
Sbjct: 476  VDVGVEGVPGFVHISRVKDGKVDALYESSGPYKTGSTHRSRVIGYSALDGVFLVSLEKSV 535

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLE 709
            + +P    ED  V +G +V+  ++  VV  + V  ++  +A+G + G +P  HLAD  L+
Sbjct: 536  LERPYLRIED--VPVGDVVTVTIEKLVVKEDGVSGLIVRLAEGIT-GFVPEMHLADVRLQ 592

Query: 710  HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
            H    +   K G +   ++L  D+    L L+ K +L+NS  +       +       G 
Sbjct: 593  HP---EKKFKEGLKVKARVLSADSAKHQLRLTLKKTLLNSETKPIKAFDEVSVGQQFPGT 649

Query: 769  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
            +  I+  G FV+F G L GF P S+  +    D ++ + VGQ V  ++++V+    R+ +
Sbjct: 650  IVKIMPIGAFVQFYGALRGFMPISEMSEAYIRDPNEHFRVGQVVNVHVVEVDPAAHRLIV 709

Query: 829  SLKQSCCSSTDASFMQEHFLLEE-KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 887
            S     C    A  M++   L+  K+  L S+K        +   ++GS+++        
Sbjct: 710  S-----CKDPAAFGMEKRLALQALKLGQLVSAKVAQKSEDEISLELVGSLLKA------- 757

Query: 888  FGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA-AILDVAKAERLVDLSLKTVFIDRF 946
               V+     +D     + +Q A   +  G  +    +L+  +  R V LSLK   +   
Sbjct: 758  ---VLRCSHMTDKSA--SKNQSALNKIRVGQTLDGLVVLEKDEDRRAVVLSLKPSLV--- 809

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIG 998
                   +A K  R   A +D  V   V   +  +    + +         LP    + G
Sbjct: 810  -------KASKDGRLLTALQDAKVGSLVQGFIRNITATAVFVQFAGNLTALLPRSLMTAG 862

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIAT--VMALPSSSTAGRLLLLLKAISETETSSSKRAK 1056
              +   +   +  Q   +   SV     V+A+P +    +      A      +      
Sbjct: 863  MQAQEGFGL-RLSQPILVKVHSVDDKRLVVAMPDAEPPSKTDKPSSASKPIANAIDPTIN 921

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIG 1114
                  VG + +A I+ +K  +L +  G    GR+ ++EV D  D+    ++    F   
Sbjct: 922  STDDITVGKITKARISSVKKTQLNVSLGDNIQGRVDVSEVFDSWDEIEDPKDPLQKFAAN 981

Query: 1115 QTVTARIIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            Q +  R+I   +  + +  FL           EL+ KPS L  +  G K L  E D+   
Sbjct: 982  QIIDVRVIGVHDARNYR--FLPFSHRTAHSVLELTAKPSSLRETARGYKPLALE-DIKPD 1038

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
                 +V   D     + +S  ++ ++   + + + S  ++ ++ F +G A+   V+++ 
Sbjct: 1039 SNWLSFVNNNDGNCLWVNLSPAVRGRIRAAEVSDDSSLSKDLRQHFPVGSALRTRVVTVK 1098

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             E   L L  R  +        ++  D   T +H       R++K+      +++QI   
Sbjct: 1099 SENGHLDLSARSARPNERLTWDELEKD---TVMH------ARVTKV--NDRQVLIQISDS 1147

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            + G VH  +L +          D  Q +PL  Y +   ++  V+ + R+ +    V LS 
Sbjct: 1148 VSGPVHMVDLSD----------DYDQANPLR-YSKNDIIRVAVVSVDRSNK---KVRLSA 1193

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            R          S  L++ +    + +  +  +    I++G+VKNV+ KG F+ L   +DA
Sbjct: 1194 R---------ESRVLNSALPVKDREITAVSQIEVGSIIRGFVKNVSDKGLFVTLG-GVDA 1243

Query: 1405 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1464
             V +++LSD Y++  +  F + +LV GRVL+V P + +V+++LK S +       +   +
Sbjct: 1244 FVRIADLSDAYLKEWKDHFQVDQLVKGRVLAVNPATGQVQMSLKAS-AVDEDYKPLPGFA 1302

Query: 1465 NLHVGDIVIGQIKRVESYGLFITIENT 1491
            +   G +V G++++V  +G FI ++ +
Sbjct: 1303 DFKKGQVVTGKVRKVADFGAFILVDKS 1329


>gi|349580519|dbj|GAA25679.1| K7_Rrp5p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1729

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 315/1351 (23%), Positives = 578/1351 (42%), Gaps = 195/1351 (14%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALDP----ILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALKSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG----VVDVV--TPNAVVVYVIA 691
                  RRI     +   +VS +   +    + ++V G     VDV+  T ++V+V +  
Sbjct: 663  DVDADRRRI-----IATCKVSNEQAAQQKDTIENIVPGRTIITVDVIEKTKDSVIVEIPD 717

Query: 692  KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSA 749
             G  +G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A
Sbjct: 718  VGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDA 776

Query: 750  QQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            ++  LP    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK
Sbjct: 777  KKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISK 836

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
             +Y+ QSV   +L  + +  +  LSLK                 +E+ +          S
Sbjct: 837  AFYINQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DS 884

Query: 865  ELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATV 914
             +K  +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  
Sbjct: 885  SIKSWDDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNY 944

Query: 915  ESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
            +   VI+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + 
Sbjct: 945  KKDDVIKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIG 1003

Query: 972  QTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP- 1029
            Q +   V     N+L L++ P     I    ++D N   F +    N +SV     AL  
Sbjct: 1004 QELTGFVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQV 1058

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
              ++  R    + AI ++    +      S+  VG  +   + +I    + L  G    G
Sbjct: 1059 KVASIDREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTG 1113

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTV 1147
               IT+  +D S  ++  F + KI   +   +++  + NK         ELS++ +    
Sbjct: 1114 ISFITDALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKT 1165

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
              I S       D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E++
Sbjct: 1166 RSIKS-----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWK 1218

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + +   + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTI 1272

Query: 1268 SKILSGVGGLVVQIGP--HLYGRVHFTELKN 1296
              +     G+ V++    ++ G  H TE+ +
Sbjct: 1273 RNVTD--FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 223/858 (25%), Positives = 367/858 (42%), Gaps = 156/858 (18%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVDVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1305 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKINN-----VIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1473
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1474 GQIKRVESYGLFITIENT 1491
            G I+ V  +G+F+ ++NT
Sbjct: 1270 GTIRNVTDFGVFVKLDNT 1287



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 154/368 (41%), Gaps = 59/368 (16%)

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
               RI + ++ D+ SN  EN+ S F +G  +  ++ +     D +  F            
Sbjct: 1026 LKARISLLDLADNDSNFSENIESVFPLGSALQVKVAS----IDREHGF------------ 1069

Query: 1147 VSEIG-SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
            V+ IG S +      + +G  + G V K+  ++ LL +   +    FI D+  + S   +
Sbjct: 1070 VNAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLK 1129

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFIHEGDIVG 1264
                  I   +   VLS++++ K + L LR      + KT  I S+++++    +G+IV 
Sbjct: 1130 EAFEDKINNVIPTTVLSVDEQNKKIELSLR----SATAKTRSIKSHEDLK----QGEIVD 1181

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1324
            G +  +     G+ V +   +   V  ++L +  + +    Y   Q      Y  G+ V 
Sbjct: 1182 GIVKNV--NDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQ------YVLGKVVT 1233

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
            C   E SR       + L+LR S              +++   K L+   D+    + +G
Sbjct: 1234 CD--EDSR-------ISLTLRES--------------EINGDLKVLKTYSDIKAGDVFEG 1270

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVL--LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
             ++NVT  G F+ L   ++   L  ++ ++D   E     F +G  V   VL   P  K+
Sbjct: 1271 TIRNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQ 1330

Query: 1443 VEVTLKTS 1450
            + ++LK S
Sbjct: 1331 ISLSLKAS 1338



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 37/330 (11%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 278
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 394
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L   
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRSA 1161

Query: 395  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIRNV 1275

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|254570329|ref|XP_002492274.1| RNA binding protein with preference for single stranded tracts of
           U's involved in synthesis of both [Komagataella pastoris
           GS115]
 gi|238032072|emb|CAY69994.1| RNA binding protein with preference for single stranded tracts of
           U's involved in synthesis of both [Komagataella pastoris
           GS115]
 gi|328353721|emb|CCA40119.1| Polyribonucleotide nucleotidyltransferase [Komagataella pastoris
           CBS 7435]
          Length = 1694

 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 219/842 (26%), Positives = 381/842 (45%), Gaps = 93/842 (11%)

Query: 53  VFPRGGGHSLTQRERDEIHAEVDAE--FEAVERGLHKKNKKKKKKTERKANETVDDLGSL 110
           VFPRGGG  LT  ER EI   V A+  FE          K+  K++  K+ +      + 
Sbjct: 36  VFPRGGGSVLTPLERKEISNRVTADVLFE----------KETAKESSFKSTDATKKRKTT 85

Query: 111 F------GDGISGKLPRYANK---------ITLKNISAGMKLWGVVAEVNEKDLVICLPG 155
                     +SG +  Y  K         +TLKN+  G  + G V  + +  + + LPG
Sbjct: 86  ATTVINPAPTVSGTI--YDQKDDSNTTTTSMTLKNLIPGSVVLGQVISIQKLGMQLGLPG 143

Query: 156 GLRG----------LARAADALDPILDNEIEANEDNL-------LPTIFHVGQLVSCIVL 198
            +RG          + +  +AL+   D+E  ++   L       L  IF +GQ +  +VL
Sbjct: 144 NIRGYVPITSVSKQITQQLEALEQDSDDEDASSSPQLSEKVFPELSKIFQLGQWLRAVVL 203

Query: 199 QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
           +      E  K KI LS+    +   L  + +  G VL   V S++DHG I+  G     
Sbjct: 204 EESSVPSE-HKHKIQLSVEPEKVNAHLEDDDLVPGGVLQVAVNSVQDHGCIVDTG-KKIP 261

Query: 259 GFLPRNNLAENSGIDV----KPGL-LLQGVVRSIDRTRKVVYLSS--DPDTVSKCVTKDL 311
           GF+   +  +NSGID+    KPG  LL  + +S ++    + L S  + D  S   T   
Sbjct: 262 GFIFSKSF-KNSGIDMETDLKPGFVLLATISKSNNKNTITLTLPSMNNKDNGSTLST--- 317

Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
              S+D ++PG+MV+  +  I E G+    L    G + + HL+  F     +  Y    
Sbjct: 318 -ATSVDAVLPGVMVNAHILDITEEGIFCRVLGLLPGRIPLAHLK-LFNVPEIRETYKIGS 375

Query: 372 KVNARILFVDPTSRAVGLTLN--PYLL-----HNRAPPSHVKVGDIYDQSKVVRVDRGLG 424
            + +R++ V     +  LTL+  P +L     ++ +P      G  ++  K+V  D    
Sbjct: 376 TIKSRVVGVLEYEGSKSLTLSTIPSILELDSTYDESPLESFPFGFTFESVKIVGKDSN-N 434

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV-RVRILGFRHLEGLATGILKA 483
           + L++      T   V +S + +E    ++  YK GS   + R++G+  ++ +    +  
Sbjct: 435 VYLELNE---DTYGQVHLSKLNKE--VSIDSFYKVGSTHHKARVIGYSPVDKVFVLTMDP 489

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
              E       D+  G +V G V  V S G  ++     +A  P  HMS+  +  P  KF
Sbjct: 490 RQLEAKFLNIQDIPIGEIVTGVVTKVHSHGLNIKIFDQFEAQVPYGHMSDVMLTYPEMKF 549

Query: 544 KVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCF 602
           K+G ++  RVL      + VT KK+L++S+   ++ +Y +      T   + K    G  
Sbjct: 550 KIGTKVKGRVLKFYRGNLCVTLKKSLLRSERDELIFTYEDVVPNKRTFATVEKFFPTGVL 609

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
           + F+N + GF P++E+       P     + Q +  RI S  PA+ +  +S ++    +S
Sbjct: 610 MSFFNNISGFLPKTEISEAYVNRPEDHLKLFQTISVRIDSIDPATNKFRVSCLLSKD-LS 668

Query: 663 EDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVM 714
           E+   K+ + + G  +++V       +A++V V      +G I    L+  D  ++ T++
Sbjct: 669 EEQEKKISTFIPGSSILEVYIVEKMKDAMIVEV-KDSNVRGVIQEGQLSDGDQNQNKTLL 727

Query: 715 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP-NSVVHGYVC 770
           ++ +  G   + L +  D +S  +  +AK SLI +++  QLP+    +     +V+GYV 
Sbjct: 728 RTAV-VGSSLEALFLHRDPKSRTINFTAKDSLIRASKSGQLPASFEELPAVGEIVYGYVH 786

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLS 829
            I   G F+ F   L+GFA R+K +  + +D L   Y+  QSVR+ IL ++ E  +  L+
Sbjct: 787 TITNAGLFIEFADGLSGFA-RTKDITDEPSDKLPSLYFKNQSVRARILKLDDEFRKFRLT 845

Query: 830 LK 831
           LK
Sbjct: 846 LK 847



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 232/1046 (22%), Positives = 439/1046 (41%), Gaps = 153/1046 (14%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            V PG++V   ++ +   G   +  G +    PL H+  F + +  + +K+G+ +  RV+G
Sbjct: 324  VLPGVMVNAHILDITEEGIFCRVLGLLPGRIPLAHLKLFNVPEIRETYKIGSTIKSRVVG 383

Query: 556  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW------ITKIEKHGCFVRFYNGV 609
            V     + +   + + S L + S+Y E+       G+      I   + +  ++      
Sbjct: 384  VLEYEGSKSLTLSTIPSILELDSTYDESPLESFPFGFTFESVKIVGKDSNNVYLELNEDT 443

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVV-KCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 666
             G    S+L  +   +  S Y VG    K R++   P  +   L+  M P ++    L  
Sbjct: 444  YGQVHLSKLNKEVSID--SFYKVGSTHHKARVIGYSPVDKVFVLT--MDPRQLEAKFLNI 499

Query: 667  --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
              + +G +V+GVV  V  + + + +  +   +  +P  H++D +     MK   K G + 
Sbjct: 500  QDIPIGEIVTGVVTKVHSHGLNIKIFDQ--FEAQVPYGHMSDVMLTYPEMK--FKIGTKV 555

Query: 725  DQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
             +  VL     NL ++ K SL+ S + +L      + PN      V     TG  + F  
Sbjct: 556  -KGRVLKFYRGNLCVTLKKSLLRSERDELIFTYEDVVPNKRTFATVEKFFPTGVLMSFFN 614

Query: 784  RLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             ++GF P+++  +    R +     +   SVR + +D  +   R+      SC  S D S
Sbjct: 615  NISGFLPKTEISEAYVNRPEDHLKLFQTISVRIDSIDPATNKFRV------SCLLSKDLS 668

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS-VIEGKVHESNDFGVVVSFEEHSDV 900
              QE                     K +  FI GS ++E  + E     ++V  ++ S+V
Sbjct: 669  EEQE---------------------KKISTFIPGSSILEVYIVEKMKDAMIVEVKD-SNV 706

Query: 901  YGFITHHQLA-GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR--------FREANS 951
             G I   QL+ G   ++ ++++ A+         V  SL+ +F+ R        F   +S
Sbjct: 707  RGVIQEGQLSDGDQNQNKTLLRTAV---------VGSSLEALFLHRDPKSRTINFTAKDS 757

Query: 952  NRQAQKKKRKREASKDL-GVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYA---SVSDYN 1006
              +A K  +   + ++L  V + V   V  +    L +   E+   + G+A    ++D  
Sbjct: 758  LIRASKSGQLPASFEELPAVGEIVYGYVHTITNAGLFI---EFADGLSGFARTKDITDEP 814

Query: 1007 TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK----SSYD 1062
            + K P   F N QSV A ++ L       RL L  K I     +++    K     + + 
Sbjct: 815  SDKLPSLYFKN-QSVRARILKLDDEFRKFRLTL--KDIDHQIVAATNPVDKSITNLNEFV 871

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTAR 1120
             G + +A+I  + P +L ++      GRI +++V D    +   +   S+FK G  +  +
Sbjct: 872  PGKITKAKIKSVTPTQLTVELAENQLGRIDVSQVFDSLLEIKDTKKPLSSFKEGAELKVK 931

Query: 1121 IIAKSNKPDMKKS--------FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            +I   NK     S         L ELSIK S L   E G   +     ++ G +  G+V 
Sbjct: 932  VIGYQNKDSSFTSVAFRDWGDILVELSIKKSEL--EEEGKVNVLSLTQITPGTKWLGFVT 989

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            +    +  +++S   + +L ++D +   S ++E ++ + +G A+      I         
Sbjct: 990  RYARGFWWVSVSPKFRTKLSLMDLSKSGS-VEELEKAYPLGSAIEVTAKQI--------- 1039

Query: 1233 VLRPFQDGISDKTVDI-SNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGR 1288
                    I +K V++ S +N    I++   GD +  RI  +      + V++   +  +
Sbjct: 1040 --------IGNKAVEVFSKENRIETINDVKVGDKLPCRIISLSHDY--VTVELSDKVKAK 1089

Query: 1289 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348
               TE         L  Y E      S  D        VL +  T R  F   +SLRS  
Sbjct: 1090 SFITE--------ALDDYSESLESTFSTND---ICTATVLSVDDTTRQIF---VSLRSE- 1134

Query: 1349 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1408
                  N+ D         K +E  ED+    IV+G++  +++ G ++ L R + A V +
Sbjct: 1135 ------NAKD---------KLIESFEDVKRGDIVRGFITRISNFGVYVSLGRTVFALVRV 1179

Query: 1409 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1468
            +++SD ++   +K   + + V G+++      +R+ +TLK S     + + ++   +L V
Sbjct: 1180 TDISDLFLTDWKKHVKLNQFVTGKIVDAGE-ERRILMTLKESQVGQGTGA-LHQFDDLKV 1237

Query: 1469 GDIVIGQIKRVESYGLFITIENTNLV 1494
            GD+  G IK++  +G+FIT++  + V
Sbjct: 1238 GDVYEGTIKKIMDFGVFITLDGVHSV 1263



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 484  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
            +A + L+ +  DVK G +V+G +  + +FG  V     V AL  +  +S+  +    K  
Sbjct: 1135 NAKDKLIESFEDVKRGDIVRGFITRISNFGVYVSLGRTVFALVRVTDISDLFLTDWKKHV 1194

Query: 544  KVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
            K+   +  +++   + +RI +T K++ V      L  + +     +  G I KI   G F
Sbjct: 1195 KLNQFVTGKIVDAGEERRILMTLKESQVGQGTGALHQFDDLKVGDVYEGTIKKIMDFGVF 1254

Query: 603  VRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
            +     + V G   RS++         S+++ G  VK +I+
Sbjct: 1255 ITLDGVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVKIL 1295


>gi|261204755|ref|XP_002629591.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
 gi|239587376|gb|EEQ70019.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
          Length = 1817

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 209/855 (24%), Positives = 357/855 (41%), Gaps = 79/855 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE---AVERGLHKKNKKKKKKTERKA--- 100
           D+ P FPRGG   LT  E+ +I   A  D  FE   A  +G      +K+KK+ + +   
Sbjct: 67  DEEPAFPRGGASVLTPLEQKQIQIQATRDVLFEQKGAPFQGHADDEDEKEKKSSKVSGGK 126

Query: 101 ---------NETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVI 151
                      TV +  +  G  I G        +  K I  G K+ G V+ +N  D+ +
Sbjct: 127 CKKGKTKAKRNTVSEAPAKEGVRIEG--------LNFKRIVIGSKVLGQVSSINAHDIGL 178

Query: 152 CLPGGLRG---LARAADALDPILDNEIEANEDNLLP--------------TIFHVGQLVS 194
            LP  L G   +   +  L   ++N +++N++                  + F +GQ + 
Sbjct: 179 SLPNNLTGYIPITAVSRTLQQKIENLLKSNQEENDNSDDDEEEEEDLDLNSYFKLGQYLR 238

Query: 195 CIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
             VL  + +    K  GK+ I LS+       GLS   +     + A V S+EDHG ++ 
Sbjct: 239 ASVLSTETEVNHGKTKGKKHIRLSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMD 298

Query: 252 FGLP--SFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
            GL      GF+    +  +  +  +K G +   VV   +    VV LS++  T      
Sbjct: 299 LGLQDGQTKGFMSSKEIPHDLEVSQIKEGSVFLCVVTGHNADGSVVKLSANLPTAGSIKK 358

Query: 309 KDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
                   +I+  +PG      +  +   G+    +      VD+     T    +    
Sbjct: 359 SHFLTSAPTINSFLPGTAAEILLTEVTSTGMAGKIMGMLNAVVDLVQSGTTTGKEDITTK 418

Query: 367 YNQHKKVNARILFVDPTSRAVGL---------TLNPYLLHNRAPPSHV-KVGDIYDQSKV 416
           Y+   K+  R++   PT   + L            P +L  +        +  I  + KV
Sbjct: 419 YHVGAKIKGRLICTFPTVEPMKLGFSILDHVVKFTPTVLEQKPSSEDTPAISAIIPEVKV 478

Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
            +V+ GLG+ +              +SD   + +   +  YK  S    RI+GF  L+ L
Sbjct: 479 TKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEARIVGFSALDNL 538

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHM 531
               L+    +       DV  G VV+GK+    I  D   G IV    G+  L    HM
Sbjct: 539 YLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVSLADGISGLVAGMHM 598

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
           S+ ++  P KKF+ GA++  R+L V    +++ +T KK+L+ S+      Y        +
Sbjct: 599 SDTKLQHPEKKFREGAQVSARILSVNLDKRQLRLTLKKSLLNSESPAWKDYNGILPGNQS 658

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G I  I+ HG  V+FY  V+GF P SE+      +P+  ++VGQVV    ++     R+
Sbjct: 659 PGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHALNVDVELRK 718

Query: 650 INLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
           + +S    P+  +E      + +  G  VSG V   +   +++ +   G     +  EH+
Sbjct: 719 LVVS-CKDPSSFTEAYKSAFENIHPGDTVSGTVFEKSSEDILLKLEDTGLV-ARLNAEHV 776

Query: 705 AD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHI 759
           AD       V  + I+ G + ++LL+L+ + ++ L+  + K SL  + Q  +LP+    +
Sbjct: 777 ADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIKVTNKPSLKQARQRGELPARFEDL 836

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
              + V G+V NI   G FV FLG +TGFAP+    D         Y++ Q +  ++  +
Sbjct: 837 KEGAKVTGFVKNITVDGMFVEFLGGITGFAPKRLVDDDHVNKPDFGYFLSQPISLSVESI 896

Query: 820 NSETGRITLSLKQSC 834
             +  R  L +K+  
Sbjct: 897 EDDRQRFILRMKEQV 911



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 218/961 (22%), Positives = 422/961 (43%), Gaps = 133/961 (13%)

Query: 583  ATDRLITHGWITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKC 638
            A   +I    +TK+E   G +V+F +   GFA  S L    +D        Y V    + 
Sbjct: 468  AISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEA 527

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYV 689
            RI+     S   NL  +    +V +   ++L     G++V G ++  ++  + +  ++  
Sbjct: 528  RIVG---FSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVS 584

Query: 690  IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 747
            +A G S G +   H++D  L+H    +   + G +   ++L ++ +   L L+ K SL+N
Sbjct: 585  LADGIS-GLVAGMHMSDTKLQHP---EKKFREGAQVSARILSVNLDKRQLRLTLKKSLLN 640

Query: 748  SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
            S      D + I P +   G + +I   G  V+F G + GF P S+  +    D ++ + 
Sbjct: 641  SESPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFN 700

Query: 808  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
            VGQ V  + L+V+ E  ++ +S K        +SF + +    E I       H G    
Sbjct: 701  VGQVVNVHALNVDVELRKLVVSCKDP------SSFTEAYKSAFENI-------HPGDT-- 745

Query: 868  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILD 926
             V G +     E  + +  D G+V          G  + + +A A +  G  + +  IL+
Sbjct: 746  -VSGTVFEKSSEDILLKLEDTGLVARLNAEHVADGQTSRNGVALARIRVGQKLNELLILN 804

Query: 927  VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 986
            + KA RL+ ++ K           S +QA+++       +DL     V   V+ +  + +
Sbjct: 805  IQKAHRLIKVTNKP----------SLKQARQRGELPARFEDLKEGAKVTGFVKNITVDGM 854

Query: 987  VLSLPEYNHSI-GYAS---VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
             +   E+   I G+A    V D +  K P   +   Q +  +V ++       R +L +K
Sbjct: 855  FV---EFLGGITGFAPKRLVDDDHVNK-PDFGYFLSQPISLSVESIEDDRQ--RFILRMK 908

Query: 1043 AISETETSSS-----------------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGI 1085
                 + +S                  +  K       G + +A++  +K  ++ ++   
Sbjct: 909  EQVNKQRASDGVKPANNVNQSSINPIDENIKSLDDLTFGRVTKAKVVSVKETQINVQLAE 968

Query: 1086 GFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII----AKSNK--PDMKKSF--- 1134
               GRI ++EV D  D     +     FK  Q +  R++    A+S+K  P   +S    
Sbjct: 969  NIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQIIPVRVLGIHDARSHKFLPISHRSGKYP 1028

Query: 1135 LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            ++ELS KPS L  +++    L +   V IG    G+V  + ++   + IS +++ +L   
Sbjct: 1029 VFELSAKPSSLQSTDLEPLSLDK---VKIGSSWVGFVNNIGDDCLWINISPNVRGRLRFT 1085

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----PFQDGISDKTVDISN 1250
            D + + S + +  + F +G A+  HV  ++ +K  L L  R    P +  ISD       
Sbjct: 1086 DLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLDLSARHGGLPNRKSISD------- 1138

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
                 F+ +G+I+ GR++++       +VQ+     G ++  ++ +          D  +
Sbjct: 1139 -----FL-KGEILLGRVTRVTERQA--LVQLSNSTVGAINLIDMAD----------DFSK 1180

Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
             +P + + + + ++  +++I    +    + LS+R S           LS+ +      +
Sbjct: 1181 VNP-ADFHKNEVIRVCIIDIDVPNK---KILLSVRPS---------RVLSSSLPIQDPEI 1227

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
              I  L  N IV+G+V+ V + G F+ L   + A + +S+LSD Y++  + EF + +LV 
Sbjct: 1228 NSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVR 1287

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            GR++  +  S +++++LK S      ++ I  + +L  G IV G+++ VE +G FI I+ 
Sbjct: 1288 GRIILADAESNKLQMSLKESVLEPNYKTPI-TIKDLKRGQIVTGKVRNVEEFGAFIVIDG 1346

Query: 1491 T 1491
            T
Sbjct: 1347 T 1347



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 106/497 (21%), Positives = 200/497 (40%), Gaps = 72/497 (14%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAEL 549
            D+  G V K KV++V      VQ    ++    +  +   ++ +K    P K FK    +
Sbjct: 943  DLTFGRVTKAKVVSVKETQINVQLAENIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQII 1002

Query: 550  VFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDR--------LITHGWITKI 596
              RVLG+   R    + ++H+       +L+   S  ++TD          I   W+  +
Sbjct: 1003 PVRVLGIHDARSHKFLPISHRSGKYPVFELSAKPSSLQSTDLEPLSLDKVKIGSSWVGFV 1062

Query: 597  EKHG--C-FVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPASRRIN 651
               G  C ++     V+G    ++L  D     + +  + VG  +K  +        R++
Sbjct: 1063 NNIGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLD 1122

Query: 652  LSFMMK--PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
            LS      P R S  D +K G ++ G V  VT    +V +     S  T+   +L D  +
Sbjct: 1123 LSARHGGLPNRKSISDFLK-GEILLGRVTRVTERQALVQL-----SNSTVGAINLIDMAD 1176

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQLP------SDASHIHP 761
              + +        E  ++ ++D +  N  +LLS + S + S+  LP      +  S +  
Sbjct: 1177 DFSKVNPADFHKNEVIRVCIIDIDVPNKKILLSVRPSRVLSSS-LPIQDPEINSISQLKV 1235

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            N +V G+V  +   G FV     +T +   S   D    +    + V Q VR  I+  ++
Sbjct: 1236 NDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVRGRIILADA 1295

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E+ ++ +SLK+S         ++ ++     I  L+                 G ++ GK
Sbjct: 1296 ESNKLQMSLKESV--------LEPNYKTPITIKDLKR----------------GQIVTGK 1331

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLV 934
            V    +FG  +  +  +++ G     ++A   VE        G +++A I+ +   +  +
Sbjct: 1332 VRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERI 1391

Query: 935  DLSLK-TVFIDRFREAN 950
             L LK + F D   E+N
Sbjct: 1392 SLGLKASYFKDSDDESN 1408



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 109/238 (45%), Gaps = 33/238 (13%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            G +V G+I K+L    G+ GL+V +   + G V    + +  +  P     E +F     
Sbjct: 561  GAVVRGKIEKLLIGTDGISGLIVSLADGISGLVAGMHMSDTKLQHP-----EKKFR---- 611

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
              EG  V  ++L ++   R    + L+L+ SL    S    D +  +  PG         
Sbjct: 612  --EGAQVSARILSVNLDKR---QLRLTLKKSLLNSESPAWKDYNGIL--PGNQ------- 657

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            SP  I+     ++ S G  +    ++   + +S +S+ Y++ P + F +G++V    L+V
Sbjct: 658  SPGTII-----SIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHALNV 712

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            +   +++ V+ K  D  + +++  +   N+H GD V G +    S  + + +E+T LV
Sbjct: 713  DVELRKLVVSCK--DPSSFTEAYKSAFENIHPGDTVSGTVFEKSSEDILLKLEDTGLV 768



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 129/278 (46%), Gaps = 32/278 (11%)

Query: 315  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
            SI   + G ++  RV  + E   ++       G +++  + + F   N   D+++++ + 
Sbjct: 1135 SISDFLKGEILLGRVTRVTERQALVQLSNSTVGAINLIDMADDFSKVN-PADFHKNEVIR 1193

Query: 375  ARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLG 424
              I+ +D  ++ + L++ P  + + + P         S +KV DI  +  V RV + GL 
Sbjct: 1194 VCIIDIDVPNKKILLSVRPSRVLSSSLPIQDPEINSISQLKVNDIV-RGFVRRVANNGLF 1252

Query: 425  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 484
            + L    T     AY+ ISD+++  +++ + +++    VR RI+    L    +  L+ S
Sbjct: 1253 VTLGHDVT-----AYIRISDLSDSYLKEWQNEFQVDQLVRGRII----LADAESNKLQMS 1303

Query: 485  AFEGLV-------FTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFE 535
              E ++        T  D+K G +V GKV  V+ FGA +   G   +  LC    M+E +
Sbjct: 1304 LKESVLEPNYKTPITIKDLKRGQIVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGK 1363

Query: 536  IVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
            +    K F+ G  +  +++ +    +RI++  K +  K
Sbjct: 1364 VEDARKVFEKGDIVKAKIIKIDLNKERISLGLKASYFK 1401



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 119/264 (45%), Gaps = 28/264 (10%)

Query: 1056 KKKSSYDVGSLV----QAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 1110
            +K SS D  ++     + ++T+++P L + ++F    +G  HI+ ++D+K + +      
Sbjct: 459  QKPSSEDTPAISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGP 518

Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            +K+  T  ARI+  S   +     L+ LS++  ++       +      DV++G  V G 
Sbjct: 519  YKVDSTHEARIVGFSALDN-----LYLLSLERKVI------DQPFLRLEDVTVGAVVRGK 567

Query: 1171 VYKV---DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
            + K+    +  + L +S        +       ++LQ  +++F  G  V+  +LS+N +K
Sbjct: 568  IEKLLIGTDGISGLIVSLADGISGLVAGMHMSDTKLQHPEKKFREGAQVSARILSVNLDK 627

Query: 1228 KLLRLVL-RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            + LRL L +   +  S    D +       I  G+   G I  I S   G +VQ    + 
Sbjct: 628  RQLRLTLKKSLLNSESPAWKDYNG------ILPGNQSPGTIISIQS--HGAIVQFYGEVR 679

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQ 1310
            G +  +E+    + DP   ++ GQ
Sbjct: 680  GFLPVSEMSEAYIKDPAQHFNVGQ 703



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 34/245 (13%)

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDV-SIGQR-----VTGYVYKVDNEWALLTISRHLKAQL 1191
            LS++PS +    + S L  ++ ++ SI Q      V G+V +V N    +T+   + A +
Sbjct: 1208 LSVRPSRV----LSSSLPIQDPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYI 1263

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
             I D     S L+E+Q  F + + V G ++  + E   L++ L+      + KT     D
Sbjct: 1264 RISD--LSDSYLKEWQNEFQVDQLVRGRIILADAESNKLQMSLKESVLEPNYKTPITIKD 1321

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                 +  G IV G++  +      +V+    +L G  H TE+             EG+ 
Sbjct: 1322 -----LKRGQIVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMA------------EGKV 1364

Query: 1312 -DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
             D    +++G  VK K+++I         + L L++S    S   S+D S D D   +++
Sbjct: 1365 EDARKVFEKGDIVKAKIIKIDLNKE---RISLGLKASYFKDSDDESNDESAD-DVSEENV 1420

Query: 1371 EKIED 1375
             + ED
Sbjct: 1421 SESED 1425


>gi|121716713|ref|XP_001275889.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL
           1]
 gi|119404046|gb|EAW14463.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL
           1]
          Length = 1819

 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 213/896 (23%), Positives = 389/896 (43%), Gaps = 91/896 (10%)

Query: 21  KASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEA 80
           ++SK+Q K    +  +A  A +L++  DD+ P FPRGGG  LT  E+ +IH +   +   
Sbjct: 29  ESSKDQKKQKTSESANAPNASELSVLRDDE-PSFPRGGGSVLTPLEKKQIHIQATKDVLF 87

Query: 81  VERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANK--------------- 125
            +RG     K+       + ++   ++G    +  S K  +                   
Sbjct: 88  EQRG----PKQSSGNFVDEDDDEDVEMGDADDNATSTKQSKKRKTKGKKRAEQEAKDKQG 143

Query: 126 -----ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA--- 177
                +  K +  G  + G V+ +N  ++ + LP  L G   +  A+  +L+++IE    
Sbjct: 144 VRIEGLNFKRLVPGSMVLGQVSSINAHNIGLSLPNNLTGYV-SLTAISKVLEDKIEKILN 202

Query: 178 -NEDN--------------LLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLS 219
            NE                 L   F++GQ +   V+ +     D     K++I L++   
Sbjct: 203 DNEKEGSDAEDESDDEDSLDLKNYFYLGQYLRAYVVSVGSNSADAPSKNKKRIELTIDPR 262

Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKP 276
               GL+   ++    + A V S+EDHG ++  G+   +  GF+    +  N+    +K 
Sbjct: 263 QTNTGLAKTDLELNTAVQASVVSVEDHGLVMDLGIEGANVKGFMSSKEIDFNTKYSSIKE 322

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILE 334
           G +   ++   +    VV LS++  +              +I+  +PG      +  +  
Sbjct: 323 GSVFLCMITGQNANGSVVKLSANLQSAGSIRKSHYLSTASTINSFLPGTAAEILLTDVSS 382

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLN 392
           +G++   +     TVD+          +    +    K+  RI+   P+S    VG +L 
Sbjct: 383 SGLIGKIMGMLDATVDLVQSGANSGKEDLAKKFQIGAKIKGRIVCTFPSSTPFKVGFSLL 442

Query: 393 PYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
            ++L        P +      +  I  ++KVV+VD GLG+ + I  T      +V +S +
Sbjct: 443 DHVLRFATEGHGPGTSEDAPAISAIVPEAKVVKVDPGLGVYVKIGDT--KKMGFVHVSRL 500

Query: 446 AEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV 502
           A+ +V  +      ++  S    R++G+  L+ L     +    E       DV  G VV
Sbjct: 501 ADGKVENIAPDHGPFRVDSVHEARVVGYSALDDLYLLSYERKVIEQPFLRLEDVTVGAVV 560

Query: 503 KGKV-------IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           KGK+         VD  G IV    G+  L P  H ++  +  P KKF+ G  +  R+L 
Sbjct: 561 KGKIEKLLIGPTGVD--GLIVALADGITGLVPSMHFADAALQFPEKKFREGMAITARILS 618

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  ++++I +T KK+L+ S+ AI   Y +      + G I  I+ HG  V+FY  V+GF 
Sbjct: 619 VNLQNRQIRLTLKKSLLNSESAIWKDYEDIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFL 678

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVK 668
           P SE+      +PS  +  GQVV    +S  P+  ++ +S    P+  +E      + ++
Sbjct: 679 PVSEMSEAFIKDPSQHFRQGQVVNVHALSVDPSLGKLAVS-CKDPSTFTESYKKAFEKIQ 737

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQ 726
            G LV+G V   + + +++ +   G     +   H+ D  + + ++ + S I+ G + + 
Sbjct: 738 PGMLVTGTVFEKSADDLLLKLDEFGLV-ARLDLAHVVDGSYPKQSSTL-SKIRVGQKLND 795

Query: 727 LLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
           LLVLD + +  L+  SA+ SL  +++Q  LP+    +   + V G+V NI   G FV FL
Sbjct: 796 LLVLDIQRARRLIKVSARASLKKASKQGSLPAKFEDVQEGTEVTGFVRNITADGLFVEFL 855

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           G +TG  P+    +   +         Q V + +  V+++  R  LS+  S  +S 
Sbjct: 856 GGITGLVPKRLLAEESASKPDYGMVKSQIVTATVHSVDADFRRFILSMNPSELTSA 911



 Score =  164 bits (414), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 196/861 (22%), Positives = 386/861 (44%), Gaps = 108/861 (12%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGAVVKGKIEKLLIGPTGVDGLIVALADGIT-GLVPSMHFADAALQFPEKK--FREGM 610

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ ++  + L+ K SL+NS   +  D   I P +   G + NI   G  V+F
Sbjct: 611  AITARILSVNLQNRQIRLTLKKSLLNSESAIWKDYEDIVPGAQSPGTIVNIQPHGAVVQF 670

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAFIKDPSQHFRQGQVVNVHALSVDPSLGKLAVSCKDP------ST 724

Query: 842  FMQEHFLLEEKI--AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
            F + +    EKI   ML            V G +     +  + + ++FG+V   +    
Sbjct: 725  FTESYKKAFEKIQPGML------------VTGTVFEKSADDLLLKLDEFGLVARLDLAHV 772

Query: 900  VYGFITHHQLAGATVESGSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            V G         + +  G  +    +LD+ +A RL+ +S +           S ++A K+
Sbjct: 773  VDGSYPKQSSTLSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKASKQ 822

Query: 959  KRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 1017
                   +D+     V   V  I  +   V  L      +    +++ +  K P    + 
Sbjct: 823  GSLPAKFEDVQEGTEVTGFVRNITADGLFVEFLGGITGLVPKRLLAEESASK-PDYGMVK 881

Query: 1018 GQSVIATVMAL------------PSS-STAGRLLLLLKAISETETSSS---KRAKKKSSY 1061
             Q V ATV ++            PS  ++AG      K     +  ++   +  +  S +
Sbjct: 882  SQIVTATVHSVDADFRRFILSMNPSELTSAGPKKPAPKPTPSNDAVANAVDESIEAMSDF 941

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTA 1119
              G  V+ ++  +K  ++ ++      GRI ++EV D+  ++ +       F+  Q ++A
Sbjct: 942  TFGRTVKCKVVSVKATQVNVQLADNVQGRIDVSEVFDEWEDIKDRKQPLRFFRPKQIISA 1001

Query: 1120 RIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            RI+   +  + K         K  ++ELSIKPS L  S   + L  E+  V  G    G+
Sbjct: 1002 RILGIHDARNHKFLPISHRSGKFPVFELSIKPSFLEASN-PTPLNLEQ--VQTGSSWLGF 1058

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            +  + ++   + +S +++ +L  +D++ + S L + ++ F IG A+  HV +++ EK  L
Sbjct: 1059 INNIADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKHFPIGSALKVHVTAVDTEKGRL 1118

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L  +   D +S   + +           G +V GR++K+      +++Q+   + G V+
Sbjct: 1119 DLAAKQRSDKLSFSDITV-----------GMVVPGRVTKVTEK--QVIMQLSDSIVGAVN 1165

Query: 1291 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
              +L +          D  + DP + Y++ + ++  V+ + +  +    + LSLR S   
Sbjct: 1166 LIDLSD----------DYSKADP-TVYNKNEVLRACVVGVDKANK---KISLSLRPSKVL 1211

Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
             SS +  D           +  ++ L  N +V+G+VK V   G F+ L   + A V +S+
Sbjct: 1212 SSSLSVQD---------PEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSD 1262

Query: 1411 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1470
            LSD Y++  +  F + +L+ GR+  V+P   R+++TLK S      ++ +  +++L VG 
Sbjct: 1263 LSDSYLKEWKDSFQVDQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPV-TINDLKVGQ 1321

Query: 1471 IVIGQIKRVESYGLFITIENT 1491
            IV G++++VE +G FI ++ +
Sbjct: 1322 IVTGKVRKVEEFGAFIVVDRS 1342



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 104/507 (20%), Positives = 205/507 (40%), Gaps = 91/507 (17%)

Query: 483  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK--- 538
            A+A +  +   SD   G  VK KV++V +    VQ    V+    +  +  E+E +K   
Sbjct: 928  ANAVDESIEAMSDFTFGRTVKCKVVSVKATQVNVQLADNVQGRIDVSEVFDEWEDIKDRK 987

Query: 539  -PGKKFKVGAELVFRVLGVKSKR----ITVTHKK-TLVKSKLAILSSYAEATDRLITH-- 590
             P + F+    +  R+LG+   R    + ++H+       +L+I  S+ EA++    +  
Sbjct: 988  QPLRFFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSIKPSFLEASNPTPLNLE 1047

Query: 591  ---------GWITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMYHVGQVVK 637
                     G+I  I     +V     V+G         +L L    E    + +G  +K
Sbjct: 1048 QVQTGSSWLGFINNIADDCLWVNLSPNVRGRLRFMDASDDLSLLADVE--KHFPIGSALK 1105

Query: 638  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV-------- 689
              + +      R++L+   +  ++S  D+  +G +V G V  VT   V++ +        
Sbjct: 1106 VHVTAVDTEKGRLDLAAKQRSDKLSFSDIT-VGMVVPGRVTKVTEKQVIMQLSDSIVGAV 1164

Query: 690  ----IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
                ++  YSK   PT +  + +  A V+               +D  +  + LS + S 
Sbjct: 1165 NLIDLSDDYSKAD-PTVYNKNEVLRACVVG--------------VDKANKKISLSLRPSK 1209

Query: 746  INSAQQLPSDAS-----HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
            + S+     D        +  N VV G+V  + ++G FV     +T +   S   D    
Sbjct: 1210 VLSSSLSVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSDLSDSYLK 1269

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
            +   ++ V Q ++  I  V+ E GR+ ++LK+S     D ++     +            
Sbjct: 1270 EWKDSFQVDQLIKGRITLVDPEQGRLQMTLKESAL---DPNYKAPVTI------------ 1314

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES---- 916
               ++LK      +G ++ GKV +  +FG  +  +  +++ G     ++A   VE+    
Sbjct: 1315 ---NDLK------VGQIVTGKVRKVEEFGAFIVVDRSANISGLCHRSEMADKRVENAKAL 1365

Query: 917  ---GSVIQAAILDVAKAERLVDLSLKT 940
               G V++A I+ + + +  +  SLK 
Sbjct: 1366 YEEGDVVKAKIIKIDRDQGKISFSLKA 1392



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 136/311 (43%), Gaps = 31/311 (9%)

Query: 541  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            K F +G+ L   V  V +++  +         KL    S+++ T  ++  G +TK+ +  
Sbjct: 1096 KHFPIGSALKVHVTAVDTEKGRLDLAAKQRSDKL----SFSDITVGMVVPGRVTKVTEKQ 1151

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF------ 654
              ++  + + G     +L  D      ++Y+  +V++  ++    A+++I+LS       
Sbjct: 1152 VIMQLSDSIVGAVNLIDLSDDYSKADPTVYNKNEVLRACVVGVDKANKKISLSLRPSKVL 1211

Query: 655  ----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLE 709
                 ++   ++    +K+  +V G V  V  + + V   A G+     +    L+D   
Sbjct: 1212 SSSLSVQDPEITSMKQLKVNDVVRGFVKRVADSGLFV---ALGHDVTAYVRVSDLSD--- 1265

Query: 710  HATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
              + +K   K  ++ DQL+     ++D E   L ++ K S ++   + P   + +    +
Sbjct: 1266 --SYLKE-WKDSFQVDQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPVTINDLKVGQI 1322

Query: 765  VHGYVCNIIETGCF--VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V G V  + E G F  V     ++G   RS+  D +  +    Y  G  V++ I+ ++ +
Sbjct: 1323 VTGKVRKVEEFGAFIVVDRSANISGLCHRSEMADKRVENAKALYEEGDVVKAKIIKIDRD 1382

Query: 823  TGRITLSLKQS 833
             G+I+ SLK S
Sbjct: 1383 QGKISFSLKAS 1393



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 157/372 (42%), Gaps = 31/372 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1044 LNLEQVQTGSSWLGFINNIADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKH------ 1097

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D +K         L L        LS   +  GMV+   V  + 
Sbjct: 1098 --FPIGSALKVHVTAVDTEKGR-------LDLAAKQRSDKLSFSDITVGMVVPGRVTKVT 1148

Query: 245  DHGYILHFGLPSFTGFLPRNNLAEN-SGID---VKPGLLLQGVVRSIDRTRKVVYLSSDP 300
            +   I+     S  G +   +L+++ S  D        +L+  V  +D+  K + LS  P
Sbjct: 1149 EKQVIMQLS-DSIVGAVNLIDLSDDYSKADPTVYNKNEVLRACVVGVDKANKKISLSLRP 1207

Query: 301  DTVSKCVT--KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V       +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++
Sbjct: 1208 SKVLSSSLSVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSDLSDSY 1267

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQS 414
                WK+ +   + +  RI  VDP    + +TL    L  + +AP +   +KVG I    
Sbjct: 1268 -LKEWKDSFQVDQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPVTINDLKVGQIV-TG 1325

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            KV +V+     ++   S  +S   +   S++A++ V   +  Y+EG  V+ +I+     +
Sbjct: 1326 KVRKVEEFGAFIVVDRSANISGLCHR--SEMADKRVENAKALYEEGDVVKAKIIKIDRDQ 1383

Query: 475  GLATGILKASAF 486
            G  +  LKAS F
Sbjct: 1384 GKISFSLKASHF 1395


>gi|259148814|emb|CAY82059.1| Rrp5p [Saccharomyces cerevisiae EC1118]
 gi|323353170|gb|EGA85470.1| Rrp5p [Saccharomyces cerevisiae VL3]
 gi|365763937|gb|EHN05463.1| Rrp5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1729

 Score =  183 bits (464), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 310/1346 (23%), Positives = 577/1346 (42%), Gaps = 185/1346 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALDP----ILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  VG  +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++ +      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKN 1296
               G+ V++    ++ G  H TE+ +
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 224/858 (26%), Positives = 367/858 (42%), Gaps = 156/858 (18%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1305 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKINN-----VIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1473
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1474 GQIKRVESYGLFITIENT 1491
            G IK V  +G+F+ ++NT
Sbjct: 1270 GTIKNVTDFGVFVKLDNT 1287



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 154/368 (41%), Gaps = 59/368 (16%)

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
               RI + ++ D+ SN  EN+ S F +G  +  ++ +     D +  F            
Sbjct: 1026 LKARISLLDLADNDSNFSENIESVFPLGSALQVKVAS----IDREHGF------------ 1069

Query: 1147 VSEIG-SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
            V+ IG S +      + +G  + G V K+  ++ LL +   +    FI D+  + S   +
Sbjct: 1070 VNAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLK 1129

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFIHEGDIVG 1264
                  I   +   VLS++++ K + L LR      + KT  I S+++++    +G+IV 
Sbjct: 1130 EAFEDKINNVIPTTVLSVDEQNKKIELSLR----SATAKTRSIKSHEDLK----QGEIVD 1181

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1324
            G +  +     G+ V +   +   V  ++L +  + +    Y   Q      Y  G+ V 
Sbjct: 1182 GIVKNV--NDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQ------YVLGKVVT 1233

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
            C   E SR       + L+LR S              +++   K L+   D+    + +G
Sbjct: 1234 CD--EDSR-------ISLTLRES--------------EINGDLKVLKTYSDIKAGDVFEG 1270

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVL--LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
             +KNVT  G F+ L   ++   L  ++ ++D   E     F +G  V   VL   P  K+
Sbjct: 1271 TIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQ 1330

Query: 1443 VEVTLKTS 1450
            + ++LK S
Sbjct: 1331 ISLSLKAS 1338



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 37/330 (11%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 278
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 394
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L   
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRSA 1161

Query: 395  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKNV 1275

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|367010384|ref|XP_003679693.1| hypothetical protein TDEL_0B03530 [Torulaspora delbrueckii]
 gi|359747351|emb|CCE90482.1| hypothetical protein TDEL_0B03530 [Torulaspora delbrueckii]
          Length = 1715

 Score =  182 bits (463), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 318/1379 (23%), Positives = 574/1379 (41%), Gaps = 222/1379 (16%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKK---------------KTER 98
            FPRGG  +LT  E  ++  E  A  + +  G   +N  + +               KTE 
Sbjct: 38   FPRGGASALTPLELKQVANE--AANDVLFGGKSSENVDESRPKKRKKTSKKSKDEPKTEV 95

Query: 99   KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
               ETVD                    I  KN+  G  L G V+ + + +L +     + 
Sbjct: 96   DEEETVD----------------LVQHINFKNLKKGSVLLGQVSAIYKHELCVSFTDNIS 139

Query: 159  GLARA---ADALDPIL-----------------DNEIEANEDNL-------LPTI---FH 188
            G  +    ++ L+ +L                 D E ++++D         LP +   F 
Sbjct: 140  GFVKITNISEQLNAVLEDLDEDMEDEKVAQVKQDGEYDSSDDEATEKPSKELPDLKNYFQ 199

Query: 189  VGQLVSCIVL---QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
            +GQ + C V+     D ++K+  K++I LS+  S +    + E + +   +   VKS ED
Sbjct: 200  LGQWLRCSVVLNSTFDTERKKNQKKRIELSIAPSDV-NPFTEEDLDKHTAIQCSVKSTED 258

Query: 246  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
            HG  L  G+  FTGF+P+  L     ++  PG +  G +    ++ + V ++ D +  + 
Sbjct: 259  HGATLDIGISGFTGFIPKKALPNFEQLE--PGSVFLGNISK--KSGRAVTVNLDFNAKNS 314

Query: 306  CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
             +T+     SID +VPG  +    + + +NG++       +G +    L+N F     K+
Sbjct: 315  KITQ---VSSIDAVVPGQAIDLLCEDVTKNGIIGKAFGLISGFLGTSQLRN-FSLEELKH 370

Query: 366  DYNQHKKVNARI---LFVDPTSRAVGLTLNPYLLH------NRAPPSHVKVGDIYDQSKV 416
             +     +  R+   L     ++ + L++ P++L        +       VG   D   V
Sbjct: 371  KFAVGSSIRCRVIASLLNRDATKVLILSILPHILSLETKLLEKESLESFPVGYKLDSCAV 430

Query: 417  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK----KYKEGSCVRVRILGFRH 472
            +  D              S   YV +    EE + ++      +    S V  R+LG+  
Sbjct: 431  LGRD--------------SEFLYVAVD---EERIGQVHSSKIGEVNHQSSVAARVLGYNE 473

Query: 473  LEGLATGILKASAFEGLVFTHSDVKPGMVV-KGKVIAVDSFGAIVQ-FPGGVKALCPLPH 530
            ++ L          +       D+  G ++ K +V+ V S G  ++ F     A  P  H
Sbjct: 474  VDRLYELSTDPEVLKLKYLRPKDIPVGTIIPKCEVVTVSSSGIQLKLFNDQFTAFVPPLH 533

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV--KSKLAILSSYAEATDRL 587
            +S+ ++V P +KFK+G+++  ++L V  +  I VT KK+LV  +  + ++SSYA A  R 
Sbjct: 534  ISDTKLVYPERKFKIGSKVKGKILNVDGRGHIFVTLKKSLVNLEEDIEVVSSYATA--RK 591

Query: 588  I------THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
            I      T   +   +  GC + F+ GV+GF P SE+       P     +GQ V  +I+
Sbjct: 592  IQEINQKTVATVQAFQAKGCHLLFFGGVRGFLPNSEISEVFVKRPEDHSRLGQTVMVKIL 651

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                   RI  +  +      E     D +V   ++V   V   T +++VV +   G  +
Sbjct: 652  DVDEERARIIATCKVSSDEAEEQKEAIDKMVLGRTMVDVTVAEKTKDSLVVEMNNVGL-R 710

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA--KYSLINSAQ--Q 751
            G I   HL+D  +E        I+ G E + L V+D +  N + +A  K SLI  AQ  Q
Sbjct: 711  GVIYVGHLSDSRIEQNRAQLKKIRIGSELNAL-VIDKDVRNQVFNATLKESLIKDAQNNQ 769

Query: 752  LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
            LP    D       + +HGY+ +I + G FV F G+  G    S AV+ +  D +K +Y+
Sbjct: 770  LPVTYEDIKEKKLTTAMHGYIKSISDKGLFVAFNGKFVGMVLPSYAVESRDVDFAKAFYI 829

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
             QSV + +L  +    R  L+ K+    S+D            K A L +       +K 
Sbjct: 830  NQSVAAYLLRTDDANQRFLLTFKEPKDKSSD------------KAASLAAINPVDKSIKR 877

Query: 869  VEGFIIGSVIEGKVH--ESNDFGVV--------VSFEEHSDVYGFITHHQLAGATVESGS 918
            +E F +G VI+ K+   + N   V+        +   E  D Y  I++ +     ++   
Sbjct: 878  LEDFKLGKVIDAKIKGVKKNQLNVILADNLYGRIDISEVFDSYEAISNPKEPLGGMKKDD 937

Query: 919  VIQAAIL---DVAKAERL-----------VDLSLKTVFIDRFREANSNRQAQKKKRKREA 964
            +I+  ++   DV   + L           ++L+++   I+     +SN + Q       +
Sbjct: 938  IIRVKVIGNHDVRGHKFLPITHTVTNSTVLELTMRKSMIN-----DSNCKVQ-------S 985

Query: 965  SKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ--KFPQKQFLNGQSV 1021
             +D+ V Q V   V     N L L++ P     I    ++D +++  K  ++QF  G ++
Sbjct: 986  IEDVAVGQEVLGFVNNYASNNLWLTVSPTLKAKISVFDLTDDSSKYSKNFEEQFPLGSAL 1045

Query: 1022 IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 1081
              +V  + S    G +         T T  S   +  +   VG  + A+I +I    + L
Sbjct: 1046 KVSVKGIESEH--GFI---------TVTGRSHAVQIATDVKVGDKLPAKIVKINEKYILL 1094

Query: 1082 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK 1141
              G    G     +  DD S  +   F    + Q + A +++  ++ D  K     LS++
Sbjct: 1095 NLGGDVVGISFAPDALDDFSVPLNVAFEGM-VNQIIPATVVSIDSENDKIK-----LSLR 1148

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
             +     EI S       D+  G  V   V +V ++   + +S +L+A  F+  S    S
Sbjct: 1149 SANPKTREIKS-----HKDIKQGDVVQALVKRVTDKGIFVYLSTNLEA--FVPVSKLSDS 1201

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN-DNMQTFIHEG 1260
             L+E+++ +   + V G V++   + ++L L LR  +  ++ K   + N D+++     G
Sbjct: 1202 FLKEWKKFYKPMQCVVGKVINSENDSRIL-LTLR--ESEVNGKLHVLKNYDDIKV----G 1254

Query: 1261 DIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
            DI  G +  +     G+ V++    ++ G  H +E+ +    D  S +  G  D L  Y
Sbjct: 1255 DIFEGNVKNVTD--FGVFVKLDDTVNITGLAHRSEIADTAPEDLSSLFGNG--DRLKAY 1309



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 185/759 (24%), Positives = 322/759 (42%), Gaps = 135/759 (17%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC + F G + GF P S+  +           +GQ+V   ILDV+ E  RI      +C 
Sbjct: 610  GCHLLFFGGVRGFLPNSEISEVFVKRPEDHSRLGQTVMVKILDVDEERARII----ATCK 665

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 893
             S+D +  Q+  +  +K+ + ++          V+  +     +  V E N+ G+  V+ 
Sbjct: 666  VSSDEAEEQKEAI--DKMVLGRT---------MVDVTVAEKTKDSLVVEMNNVGLRGVIY 714

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
                SD    I  ++     +  GS + A ++D     ++ + +LK   I   ++A +N+
Sbjct: 715  VGHLSD--SRIEQNRAQLKKIRIGSELNALVIDKDVRNQVFNATLKESLI---KDAQNNQ 769

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSDY 1005
                 +  +E      +H  + +I +    V  N  ++ + LP Y   +  + +A     
Sbjct: 770  LPVTYEDIKEKKLTTAMHGYIKSISDKGLFVAFNGKFVGMVLPSYAVESRDVDFA----- 824

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA---------- 1055
                   K F   QSV A +  L +     R LL  K   E +  SS +A          
Sbjct: 825  -------KAFYINQSVAAYL--LRTDDANQRFLLTFK---EPKDKSSDKAASLAAINPVD 872

Query: 1056 ---KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK---SNVVENLFS 1109
               K+   + +G ++ A+I  +K  +L +      +GRI I+EV D     SN  E L  
Sbjct: 873  KSIKRLEDFKLGKVIDAKIKGVKKNQLNVILADNLYGRIDISEVFDSYEAISNPKEPL-G 931

Query: 1110 NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
              K    +  ++I   +    K          S + EL+++ SM+  S    + +    D
Sbjct: 932  GMKKDDIIRVKVIGNHDVRGHKFLPITHTVTNSTVLELTMRKSMINDSNCKVQSI---ED 988

Query: 1161 VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKAVT 1217
            V++GQ V G+V  Y  +N W  LT+S  LKA++ + D   + S+  + F+ +F +G A+ 
Sbjct: 989  VAVGQEVLGFVNNYASNNLW--LTVSPTLKAKISVFDLTDDSSKYSKNFEEQFPLGSALK 1046

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI-----LS 1272
              V  I  E   + +  R          V I+ D     +  GD +  +I KI     L 
Sbjct: 1047 VSVKGIESEHGFITVTGRSH-------AVQIATD-----VKVGDKLPAKIVKINEKYILL 1094

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
             +GG VV I         F        S PL+   EG  +        Q +   V+ I  
Sbjct: 1095 NLGGDVVGISFAPDALDDF--------SVPLNVAFEGMVN--------QIIPATVVSIDS 1138

Query: 1333 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1392
                   ++LSLRS+                +   + ++  +D+    +VQ  VK VT K
Sbjct: 1139 E---NDKIKLSLRSA----------------NPKTREIKSHKDIKQGDVVQALVKRVTDK 1179

Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            G F+ LS  L+A V +S LSD +++  +K +   + V G+V++ E  S R+ +TL+ S+ 
Sbjct: 1180 GIFVYLSTNLEAFVPVSKLSDSFLKEWKKFYKPMQCVVGKVINSENDS-RILLTLRESEV 1238

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                   + N  ++ VGDI  G +K V  +G+F+ +++T
Sbjct: 1239 -NGKLHVLKNYDDIKVGDIFEGNVKNVTDFGVFVKLDDT 1276



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 134/311 (43%), Gaps = 26/311 (8%)

Query: 541  KKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            ++F +G+ L   V G++S+   ITVT +   V+     +++  +  D+L     I KI +
Sbjct: 1037 EQFPLGSALKVSVKGIESEHGFITVTGRSHAVQ-----IATDVKVGDKLPAK--IVKINE 1089

Query: 599  HGCFVRFYNGVQG--FAPRSELGLDPGCEPSSMYH---VGQVVKCRIMSSIPASRRINLS 653
                +     V G  FAP +   LD    P ++     V Q++   ++S    + +I LS
Sbjct: 1090 KYILLNLGGDVVGISFAPDA---LDDFSVPLNVAFEGMVNQIIPATVVSIDSENDKIKLS 1146

Query: 654  FMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
                  K   +     +K G +V  +V  VT   + VY+      +  +P   L+D    
Sbjct: 1147 LRSANPKTREIKSHKDIKQGDVVQALVKRVTDKGIFVYLSTN--LEAFVPVSKLSDSFLK 1204

Query: 711  ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
                K   KP       ++     S +LL+ + S +N    +  +   I    +  G V 
Sbjct: 1205 E--WKKFYKPMQCVVGKVINSENDSRILLTLRESEVNGKLHVLKNYDDIKVGDIFEGNVK 1262

Query: 771  NIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
            N+ + G FV+      +TG A RS+  D    DLS  +  G  +++ ++ VN +  +I+L
Sbjct: 1263 NVTDFGVFVKLDDTVNITGLAHRSEIADTAPEDLSSLFGNGDRLKAYVIKVNPDKKQISL 1322

Query: 829  SLKQSCCSSTD 839
            SLK S  S  D
Sbjct: 1323 SLKASHFSKQD 1333


>gi|320036441|gb|EFW18380.1| rRNA biogenesis protein RRP5 [Coccidioides posadasii str. Silveira]
          Length = 1830

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 220/853 (25%), Positives = 365/853 (42%), Gaps = 80/853 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE--AVERGLHKKNKKKKKKTERKANETV 104
           D+ P FPRGG ++LT  ER +I   A  D  FE      G    +  + +K E  A E  
Sbjct: 73  DEAPAFPRGGNNALTPLERKQIQIQATRDVLFEQNGTPGGEILNDDSEIEKDEDTAREDA 132

Query: 105 DDLGSLFGDGISGKL----------PRYANKITLKNISAGMKLWGVVAEVNEKDLVICLP 154
                        K           P+  + ++ K I  G K+ G V+ +   ++ + LP
Sbjct: 133 TKASKKKQKAKKHKKSAEALAKPQGPKIES-LSFKRIVPGSKILGQVSSIGTHNISLALP 191

Query: 155 GGLRGLARAADALDPILDNEIEANEDNL---------------LPTIFHVGQLVSCIVLQ 199
             L G      A+  IL  +IE    N                L +   +GQ +   V  
Sbjct: 192 NNLTGYVPWT-AVSKILKGKIEKLLKNAEDDEIDEDTDEDDFNLKSYVRLGQYLRASVSS 250

Query: 200 LDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
             D+   +GK  ++I LS+       GLS   +     + A V S+ED+G I+  GL   
Sbjct: 251 TTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMIVDSTVQASVLSVEDYGLIMDLGLEDV 310

Query: 258 T--GFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL- 311
              GF+    L    G+D   VK G +   VV   +    V+ LS++    +        
Sbjct: 311 NTRGFMSSKELP--PGVDLSQVKEGAVFLCVVTGHNAAGNVIKLSANLQKAASAKKSHYL 368

Query: 312 -KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
               +I+  +PG      +  +  NG+    +      VD  H  +T  T +    Y   
Sbjct: 369 SSAPTINTFLPGTAAEILLTEVTPNGMTGKIMGMLDVVVDAVHSGSTDETKDLTKKYRPA 428

Query: 371 KKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVK----------VGDIYDQSKVVR 418
            K   R++   P+     +G ++  ++L  +  P+ V           +  I  + KV++
Sbjct: 429 TKATGRLICTYPSDENPKLGFSILDHVL--KFSPTSVADPQDRDDKPAISAIIPEVKVIK 486

Query: 419 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEG 475
           VD  LGL + + +T      +V IS V + +V  L   E  +K GS    RI+GF  L+ 
Sbjct: 487 VDPTLGLYVQLGNT--KHYGFVHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFNALDN 544

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPH 530
           L    L+    +       DV  G VVKGK+    +  D   G +V    G+  L P  H
Sbjct: 545 LFLLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLLVSLADGISGLVPGVH 604

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
           M++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S+ AI   Y +      
Sbjct: 605 MADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQ 664

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
           + G    I+++G  ++FY  V+GF P SE+      +PS  + +GQVV    +S      
Sbjct: 665 SPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQG 724

Query: 649 RINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
           R+ +S    P+ V++      + V  G LVSG V   + + +++ + A G     +  E 
Sbjct: 725 RLVVS-CKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLLLKLEAGGLI-ARLSAEQ 782

Query: 704 LADHL-EHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASH 758
           L+D     A    + ++ G +   LL+L    ++ L+  S K SL  + ++  LP+    
Sbjct: 783 LSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKGTLPAKFED 842

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +  NS V G V NI + G FV FLG LTGF P+    D         +   QS+  ++  
Sbjct: 843 LKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSS 902

Query: 819 VNSETGRITLSLK 831
           ++ +  R  L++K
Sbjct: 903 IDQDAQRFILTMK 915



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 205/869 (23%), Positives = 390/869 (44%), Gaps = 122/869 (14%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 565  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGVHMADTKLQHP---EKKFREG 620

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 621  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 680

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 681  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 733

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            S + + +    K A               E    G ++ G V E +   +++  E    +
Sbjct: 734  SIVTDAY----KSAF--------------ENVHPGLLVSGTVFEKSSDDLLLKLEAGG-L 774

Query: 901  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKK 959
               ++  QL+ A     +   A +    K   L+ LS+ KT  + +     S + A +K 
Sbjct: 775  IARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKG 834

Query: 960  RKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKFP 1011
                  +DL ++ +V  +V  + ++ + +         LP+      + + +D+      
Sbjct: 835  TLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG----- 889

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV-------- 1063
               F+  QS+  +V ++     A R +L +K + + E    +R K K++ ++        
Sbjct: 890  ---FMRTQSISCSVSSI--DQDAQRFILTMKPVEKEEEKHERRYKTKNTNELSVSNPVDQ 944

Query: 1064 ----------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNF 1111
                      G + +A IT +K  +L +       GRI ++EV D+  ++ +       +
Sbjct: 945  DIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLY 1004

Query: 1112 KIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
            K  Q V  +I+   +    K         K  ++ELS KPS L   ++    L +   V 
Sbjct: 1005 KPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEK---VK 1061

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V +
Sbjct: 1062 VGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAA 1121

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
            ++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+ 
Sbjct: 1122 VDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQLN 1170

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
              L G +   ++                 D  S  +   F K  VL +         V++
Sbjct: 1171 ESLVGAIGLLDMA----------------DDYSKINPANFHKNAVLRVCV-------VDV 1207

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             + +    +S   S  LST +      +  I+ L  N IV+G+V+ +   G F+ L   +
Sbjct: 1208 DVPNKRVALSVRPSKVLSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNV 1267

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1462
             A V +S+LSD Y++  + EF I ++V GR+  V+P +K+V++TLK S      +  +  
Sbjct: 1268 TAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPL-K 1326

Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            L +L  G IV G++++VE +G F++I+ T
Sbjct: 1327 LKDLKPGQIVTGKVRKVEEFGAFVSIDGT 1355



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            +SLE V+ G     +V +I D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1055 ISLEKVKVGSSFLGFVNNIGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1113

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1114 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1166

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 394
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1167 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1222

Query: 395  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 447
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1223 VLSTSLPVEDPEIASI-DRLKVNDIVRGFVRRIADIGLFVTLGH---NVTAYVRVSDLSD 1278

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKG 504
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1279 SYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1338

Query: 505  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 562
            KV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L +  K+  
Sbjct: 1339 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQ 1398

Query: 563  VT 564
            ++
Sbjct: 1399 IS 1400



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 138/607 (22%), Positives = 241/607 (39%), Gaps = 108/607 (17%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICL-PGGLRGLAR-AADALDPILDNEIEANED 180
            A K   +N+  G+ + G V E +  DL++ L  GGL  +AR +A+ L     ++  AN  
Sbjct: 739  AYKSAFENVHPGLLVSGTVFEKSSDDLLLKLEAGGL--IARLSAEQLSDAAPSKAAANLA 796

Query: 181  NLLPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSL---LYKGL---SLETVQEG 233
             L      VGQ L   ++L +         R I +S + SL   L KG      E ++  
Sbjct: 797  RL-----RVGQKLHDLLILSI-----RKTHRLIQVSNKPSLKTALEKGTLPAKFEDLKLN 846

Query: 234  MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL----LQGVVRSIDR 289
              +T  V++I D G  + F L   TGFLP+  + +        G +    +   V SID+
Sbjct: 847  SSVTGLVRNITDDGIFVEF-LGGLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSSIDQ 905

Query: 290  TRKVVYLSSDPD-------------------TVSKCVTKDLKGISIDLLVPGMMVSTRVQ 330
              +   L+  P                    +VS  V +D+K  S+D  + G +   R+ 
Sbjct: 906  DAQRFILTMKPVEKEEEKHERRYKTKNTNELSVSNPVDQDIK--SLDDFITGKVTKARIT 963

Query: 331  SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND---------YNQHKKVNARILFVD 381
            S+ +  + +       G +D+  + +     NW++          Y   + V  +IL V 
Sbjct: 964  SVKDTQLNVLLADNVQGRIDVSEVFD-----NWEDIKDRKQPLRLYKPKQVVPVKILGVH 1018

Query: 382  --------PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRG---LGLLLDI- 429
                    P S   G      +    A PS +K  D+ D   + +V  G   LG + +I 
Sbjct: 1019 DARTHKFLPISHRTGKV---PVFELSAKPSSLKSPDL-DPISLEKVKVGSSFLGFVNNIG 1074

Query: 430  ---------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
                     PS     P      D+A      +++ +  GS ++V +        +    
Sbjct: 1075 DDCLWLNISPSVRGKLPIMDISDDLAL--AGDIKRTFPIGSALKVTVAAV----DVDKNR 1128

Query: 481  LKASAFEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEI 536
            L  +A  G      T SD+  GM++ GKV  V     +VQ     V A+  L    ++  
Sbjct: 1129 LDLTAKHGASSKKLTISDLSKGMILLGKVTKVTERQVLVQLNESLVGAIGLLDMADDYSK 1188

Query: 537  VKPGKKFKVGAELVFRV----LGVKSKRITVTHKKT-LVKSKLAILSSYAEATDRL---- 587
            + P    K     V RV    + V +KR+ ++ + + ++ + L +      + DRL    
Sbjct: 1189 INPANFHK---NAVLRVCVVDVDVPNKRVALSVRPSKVLSTSLPVEDPEIASIDRLKVND 1245

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            I  G++ +I   G FV   + V  +   S+L      E    + + Q+V+ RI    P +
Sbjct: 1246 IVRGFVRRIADIGLFVTLGHNVTAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDPEA 1305

Query: 648  RRINLSF 654
            +++ ++ 
Sbjct: 1306 KKVQMTL 1312



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 31/215 (14%)

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            N +V G+V  I + G FV     +T +   S   D    +    + + Q VR  I  V+ 
Sbjct: 1244 NDIVRGFVRRIADIGLFVTLGHNVTAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDP 1303

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E  ++ ++LKQS         +   +    K+  L+                 G ++ GK
Sbjct: 1304 EAKKVQMTLKQSA--------LDPDYKPPLKLKDLKP----------------GQIVTGK 1339

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLV 934
            V +  +FG  VS +  +++ G     ++A   V       E G +++A IL +   +  +
Sbjct: 1340 VRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQI 1399

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
             L LK  + +   +   +  ++    +     +LG
Sbjct: 1400 SLGLKASYFNNDSDEADSDMSEGASEEESGDDELG 1434



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 127/326 (38%), Gaps = 62/326 (19%)

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL--- 1234
            +  + ISR    ++  L SA  P         F +G    G ++  N    L  L L   
Sbjct: 503  YGFVHISRVKDGKVSSLSSAEGP---------FKVGSHHEGRIIGFNALDNLFLLSLEKK 553

Query: 1235 ---RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL---SGVGGLVVQIGPHLYGR 1288
               +PF   + D TV             G +V G+I K+L    G+ GL+V +   + G 
Sbjct: 554  VIDQPFLR-LEDVTV-------------GAVVKGKIEKLLMGPDGINGLLVSLADGISGL 599

Query: 1289 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348
            V    + +  +  P     E +F       EG  V  ++L ++   R    + L+L+ SL
Sbjct: 600  VPGVHMADTKLQHP-----EKKFR------EGLQVTARILSVNLEKR---QLRLTLKKSL 645

Query: 1349 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1408
                S    D                D++P     G   ++   G  I     +   + +
Sbjct: 646  LHSESAIWKDY--------------RDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPV 691

Query: 1409 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1468
            S +S+ Y++ P + F IG++V    LSV+    R+ V+ K  D    + +  +   N+H 
Sbjct: 692  SEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK--DPSIVTDAYKSAFENVHP 749

Query: 1469 GDIVIGQIKRVESYGLFITIENTNLV 1494
            G +V G +    S  L + +E   L+
Sbjct: 750  GLLVSGTVFEKSSDDLLLKLEAGGLI 775


>gi|254586193|ref|XP_002498664.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
 gi|238941558|emb|CAR29731.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
          Length = 1717

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 226/848 (26%), Positives = 379/848 (44%), Gaps = 91/848 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERG-----LHKKNKKKKKKTERKANETVDDLG 108
           FPRGGG +LT  E  ++  E  +E    + G     +  +  KKKK T +    + +   
Sbjct: 34  FPRGGGSALTPLELKKVANEAASEVLFGDNGGDSEEVSSRPAKKKKTTTKPQATSAEGTN 93

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA---- 164
           ++       +       ++ K +     L G V+ +N+ DL +    G+ G         
Sbjct: 94  AVAAAAADDETFNVVEHMSFKTLKPNSYLLGQVSSINKNDLTVSFTDGISGFVTMTHISE 153

Query: 165 ------DALDPILD----------------NEIEANEDNLLPTI---FHVGQLVSCIVL- 198
                 + LD  +D                +E EA +   LP +   F +GQ + C V  
Sbjct: 154 QFTSILEQLDDKMDASDHEEDSDHDHSDDEDEAEARKSKELPDLNQYFQLGQWLRCRVTI 213

Query: 199 --QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
              +D  +K+  K++I LSL  S +    S E + +   +   VKS+EDHG IL  G+  
Sbjct: 214 NSAMDSGRKKKDKKRIELSLEPSEV-NSFSEEDLDKYSAVQCSVKSMEDHGAILDLGIEG 272

Query: 257 FTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS 315
            TGF+ + ++ +  G    PG + L  VV+   RT  V +     D  SK   K  +  S
Sbjct: 273 LTGFVSKKDIPQ--GWQCLPGSVFLANVVKKSSRTVNVNF-----DFRSKS-NKITQISS 324

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
           ID++VPG +V    Q I E GV+        G + I +    F     ++ +     +  
Sbjct: 325 IDVVVPGQVVDFMCQKITEQGVLGKVFGMLPGFLGI-NQSRIFKQEALRHTFAIGSNIKC 383

Query: 376 RILFVDPT---SRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
           RI+   P+    + + L++ P +L   +  S  +  D +    + +    LG        
Sbjct: 384 RIIAQLPSKSDEKTLILSILPNILSLESKWSKDEALDAFPVGHICQNCEVLG-------- 435

Query: 433 PVSTPAYVTISDVAEEEVRKLEK--KYKEGSCVR--VRILGFRHLEGLATGILKASAFEG 488
             S   Y+ + D    +V  L K  +  E S  R   R+LG+  ++ L          E 
Sbjct: 436 RDSEYIYLALDDERFGQVH-LSKAGELVESSKNRSDARVLGYNGVDKLYQLGTDPKLLEL 494

Query: 489 LVFTHSDVKPGMVVKG-KVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVG 546
                 D+  G +V G +++ V S G  ++  G   KA  PL H+S+  +V P +KFK+G
Sbjct: 495 RYLRAEDIPAGELVTGCEIVTVSSKGIELRLFGSQFKAFVPLLHISDIRLVYPERKFKIG 554

Query: 547 AELVFRVLGVKSK-RITVTHKKTLV---KSKLAILSSYAEA----TDRLITHGWITKIEK 598
           +++  RVL V ++ RI  T KK+LV   +    ++SSY  A    +   +T   + +   
Sbjct: 555 SKVKCRVLSVDARGRIFATLKKSLVGLDEENTKVISSYDSANALKSANEVTIATVQQFHT 614

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINL 652
            GCF+ F+  ++GF P +E+       P     +GQ V  +++      S I A+ +I+ 
Sbjct: 615 KGCFLTFFGKLKGFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRIIATCKIS- 673

Query: 653 SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEH 710
           + +    + S ++++   +LV   V   T +++VV +  K  S +G I   HL+D  +E 
Sbjct: 674 NDLAAQQKESIEEMIPGRTLVDVTVAEKTKDSLVVEL--KDLSLRGVIYVGHLSDARIEQ 731

Query: 711 ATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQ--LP---SDASHIHPNSV 764
                  IK G E   L++  +  +++  +S K SLI  A++  LP    D     P + 
Sbjct: 732 NRASLKKIKIGSELKGLVIDKDVRTHVFNMSLKESLIKDAKEDLLPINYQDVKSKVPTTP 791

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
           +HGY+ +I E G FV F G+  G    S AV+ +  D+SKT+YV QSV + +L  + E  
Sbjct: 792 MHGYIKSISEKGLFVAFNGKFVGLVLPSYAVESRDVDISKTFYVNQSVTAYLLRTDDEHE 851

Query: 825 RITLSLKQ 832
           R  LSLK+
Sbjct: 852 RFLLSLKE 859



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 194/801 (24%), Positives = 330/801 (41%), Gaps = 132/801 (16%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
            L+ LD E++ ++ S      +SA  L S       N V    V      GCF+ F G+L 
Sbjct: 578  LVGLDEENTKVISS-----YDSANALKS------ANEVTIATVQQFHTKGCFLTFFGKLK 626

Query: 787  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
            GF P ++  +           +GQ+V   +++V+ E  RI      +C  S D +  Q+ 
Sbjct: 627  GFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRII----ATCKISNDLAAQQK- 681

Query: 847  FLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
                                + +E  I G ++++  V E     +VV  ++ S + G I 
Sbjct: 682  --------------------ESIEEMIPGRTLVDVTVAEKTKDSLVVELKDLS-LRGVIY 720

Query: 906  HHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
               L+ A +E           GS ++  ++D      + ++SLK   I   +E       
Sbjct: 721  VGHLSDARIEQNRASLKKIKIGSELKGLVIDKDVRTHVFNMSLKESLIKDAKEDLLPINY 780

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQK 1013
            Q  K K   +   G  ++++     V  N  ++ L LP Y        +S         K
Sbjct: 781  QDVKSKVPTTPMHGYIKSISEKGLFVAFNGKFVGLVLPSYAVESRDVDIS---------K 831

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLK----------AISETETSSSKRAKKKSSYDV 1063
             F   QSV A +  L +     R LL LK          + +E      +  K    + +
Sbjct: 832  TFYVNQSVTAYL--LRTDDEHERFLLSLKEPKNASNGKKSDAEIVNPVDENIKTSEDFTL 889

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARI 1121
            G +V+ ++  +K  +L +       GR+ + EV D  +  N  +   +NFK G  +  RI
Sbjct: 890  GRIVKGKVKAVKKNQLNIILADNIFGRVDVAEVFDHIEDINDPKQPLANFKKGDVIDVRI 949

Query: 1122 IA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            I     KS+K       + K  + EL++KPS L  +E  +K +    DV + + V G++ 
Sbjct: 950  IGNHDVKSHKFLPITHQVGKGTVLELTVKPSKLKGNEFKAKDI---EDVKVDEEVLGFIN 1006

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLR 1231
               N    LT+S  LKA++  LD   + +EL +  +  F +G A    V  I+KE   + 
Sbjct: 1007 NHLNNSLWLTVSPRLKAKVSALDLVDDGAELSDNLEDSFPLGTAFKIRVTGIDKEHATIT 1066

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
               R             S +N++     G  V  RI K+      +++ +G  + G    
Sbjct: 1067 ATGRSH-----------SINNIKD-AQPGTKVPARILKVNEKY--VLLDLGSGVKGISFA 1112

Query: 1292 TE-LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
            T+ L +  +  P +  D+          + Q V   VL +         ++LSLRS    
Sbjct: 1113 TDALDDFSIPLPEAFKDK----------QNQIVSATVLLVDEE---NSRIKLSLRSPAAK 1159

Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1410
              + +S                 EDL    IVQ  VK  T KG F+ LS  L+A V +S 
Sbjct: 1160 THAISSH----------------EDLKKGAIVQALVKGTTDKGVFVYLSSNLEAFVPVSK 1203

Query: 1411 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1470
            LSD Y++  +K +   + V G+V++ +  S R+ +TL+ S+        +    ++ VGD
Sbjct: 1204 LSDSYIKEWKKFYQPMQHVVGKVVNCDDDS-RILLTLRESEV-NGDLKILKGYDDIKVGD 1261

Query: 1471 IVIGQIKRVESYGLFITIENT 1491
            I  G +K V  +G+F+ +++T
Sbjct: 1262 IFNGHVKNVTDFGVFVKLDDT 1282



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 18/299 (6%)

Query: 543  FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
            F +G     RV G+  +  T+T        +   +++  +A         I K+ +    
Sbjct: 1045 FPLGTAFKIRVTGIDKEHATIT-----ATGRSHSINNIKDAQPGTKVPARILKVNEKYVL 1099

Query: 603  VRFYNGVQGFAPRSELGLDPGCEP---SSMYHVGQVVKCRIMSSIPASRRINLSF---MM 656
            +   +GV+G +  ++  LD    P   +      Q+V   ++     + RI LS      
Sbjct: 1100 LDLGSGVKGISFATD-ALDDFSIPLPEAFKDKQNQIVSATVLLVDEENSRIKLSLRSPAA 1158

Query: 657  KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
            K   +S  + +K G++V  +V   T   V VY+ +    +  +P   L+D   +    K 
Sbjct: 1159 KTHAISSHEDLKKGAIVQALVKGTTDKGVFVYLSSN--LEAFVPVSKLSDS--YIKEWKK 1214

Query: 717  VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
              +P       +V  ++ S +LL+ + S +N   ++      I    + +G+V N+ + G
Sbjct: 1215 FYQPMQHVVGKVVNCDDDSRILLTLRESEVNGDLKILKGYDDIKVGDIFNGHVKNVTDFG 1274

Query: 777  CFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             FV+      LTG A R++  D    DL+  + VG  V++ I  VN+E  +I+LSLK S
Sbjct: 1275 VFVKLDDTVNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNAEKRKISLSLKAS 1333



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 5/181 (2%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            + +H D+K G +V+  V      G  V     ++A  P+  +S+  I +  K ++    +
Sbjct: 1163 ISSHEDLKKGAIVQALVKGTTDKGVFVYLSSNLEAFVPVSKLSDSYIKEWKKFYQPMQHV 1222

Query: 550  VFRVLGVKS-KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            V +V+      RI +T +++ V   L IL  Y +     I +G +  +   G FV+  + 
Sbjct: 1223 VGKVVNCDDDSRILLTLRESEVNGDLKILKGYDDIKVGDIFNGHVKNVTDFGVFVKLDDT 1282

Query: 609  VQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            V   G A R+E+  +   + +S++ VG  VK  I       R+I+LS  +K +R S+++ 
Sbjct: 1283 VNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNAEKRKISLS--LKASRFSKEED 1340

Query: 667  V 667
            V
Sbjct: 1341 V 1341



 Score = 47.8 bits (112), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 153/367 (41%), Gaps = 65/367 (17%)

Query: 1105 ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            E L   F IG  +  RIIA+      +K+ +  LSI P++L++    SK      D ++ 
Sbjct: 369  EALRHTFAIGSNIKCRIIAQLPSKSDEKTLI--LSILPNILSLESKWSK------DEALD 420

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF---HIGKAVTGHVL 1221
                G++ +                ++   DS Y    L +   RF   H+ KA  G ++
Sbjct: 421  AFPVGHICQ--------------NCEVLGRDSEYIYLALDD--ERFGQVHLSKA--GELV 462

Query: 1222 SINKEKKLLRL-----VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
              +K +   R+     V + +Q G   K +++       ++   DI  G   ++++G   
Sbjct: 463  ESSKNRSDARVLGYNGVDKLYQLGTDPKLLELR------YLRAEDIPAG---ELVTGCEI 513

Query: 1277 LVVQ---IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1333
            + V    I   L+G      +  + +SD    Y E +F        G  VKC+VL +   
Sbjct: 514  VTVSSKGIELRLFGSQFKAFVPLLHISDIRLVYPERKFKI------GSKVKCRVLSVD-- 565

Query: 1334 VRGTFHVELSLRSSLDGMSSTNSSDLST-DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1392
             RG      +L+ SL G+   N+  +S+ D     K        S N +    V+   +K
Sbjct: 566  ARGRIFA--TLKKSLVGLDEENTKVISSYDSANALK--------SANEVTIATVQQFHTK 615

Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            GCF+    KL   +  + +S+ +V  P+    +G+ V+ +++ V+    R+  T K S+ 
Sbjct: 616  GCFLTFFGKLKGFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRIIATCKISND 675

Query: 1453 RTASQSE 1459
              A Q E
Sbjct: 676  LAAQQKE 682



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 19/147 (12%)

Query: 127  TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTI 186
             +K+   G K+   + +VNEK +++ L  G++G++ A DALD   D  I       LP  
Sbjct: 1076 NIKDAQPGTKVPARILKVNEKYVLLDLGSGVKGISFATDALD---DFSIP------LPEA 1126

Query: 187  F--HVGQLVSCIVLQLDDDKKEIGKRKIWLSLR--LSLLYKGLSLETVQEGMVLTAYVKS 242
            F     Q+VS  VL +D++       +I LSLR   +  +   S E +++G ++ A VK 
Sbjct: 1127 FKDKQNQIVSATVLLVDEENS-----RIKLSLRSPAAKTHAISSHEDLKKGAIVQALVKG 1181

Query: 243  IEDHGYILHFGLPSFTGFLPRNNLAEN 269
              D G  ++    +   F+P + L+++
Sbjct: 1182 TTDKGVFVYLS-SNLEAFVPVSKLSDS 1207


>gi|367003163|ref|XP_003686315.1| hypothetical protein TPHA_0G00450 [Tetrapisispora phaffii CBS 4417]
 gi|357524616|emb|CCE63881.1| hypothetical protein TPHA_0G00450 [Tetrapisispora phaffii CBS 4417]
          Length = 1706

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 337/1441 (23%), Positives = 585/1441 (40%), Gaps = 265/1441 (18%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKAN------------ 101
            FPRGG  +LT  E  ++  E      A    L   N KKK+++    +            
Sbjct: 37   FPRGGASALTSLELKQVSNE------AANDVLFGNNGKKKRESPSTGSKSKKSNKKSKKA 90

Query: 102  -----ETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGG 156
                 E VDD    F              +  KN+  G +L G ++ +   DL I    G
Sbjct: 91   DATELELVDDEDDEFA---------IIQHVNFKNLKVGSQLLGQISSITRNDLRISFTDG 141

Query: 157  LRGLARAADALDPILDNEIEANED------------------------------NLLPTI 186
            + G     +  + I D   + +E+                              NL+  +
Sbjct: 142  INGYVPITNISEQITDILTQIDEEMADSSDDSDSDEEYESSDDKSEKKKLTEKPNLID-L 200

Query: 187  FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
            F VGQ + C V +   LD   K+  KR++ LS+  S +    S + + +   +   VKSI
Sbjct: 201  FKVGQWLRCSVTENTALDATTKK--KRRLELSIEPSAV-NTFSADDLNKFSTVQCSVKSI 257

Query: 244  EDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDT 302
            EDHG IL  G+ +FTGF+ + +    +  ++KPG + L  ++   DRT  V  + S  + 
Sbjct: 258  EDHGAILDLGISNFTGFISKKD--SKTFDNLKPGHVFLANIINKSDRTVTVNQVFSKKNK 315

Query: 303  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 362
            VS          SID +VPG +V    + I  NG+         G +   HL+ TF    
Sbjct: 316  VSHIS-------SIDCVVPGQLVEFLSEKIGGNGIFGKAFGSIAGYITDIHLE-TFSEEK 367

Query: 363  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRG 422
             K  +   + V ARI+ + P      + L                  +  Q+ ++ +   
Sbjct: 368  LKEKFPVGQNVPARIIAILPNKEGDNVLL------------------LSAQTHIISLTSV 409

Query: 423  LGLLLDIPSTPV-------------STPAYVTISDVAEEEVRKLEKK----YKEGSCVRV 465
            L  + ++ + P+             S+  Y+T+ +   E V ++  K      E   +  
Sbjct: 410  LSEIENLEAFPIGYTFDSATIKGRDSSFLYLTLDN---ERVGQVHNKNIGSALESEKISA 466

Query: 466  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQFPGG-VK 523
            R+LG+  ++                    D+K G V+   ++ AV + G  ++  GG   
Sbjct: 467  RVLGYTSVDNAFQLSTDPEMLAKKYVRAIDIKIGEVLTNCEITAVSTEGIQLKLFGGQFT 526

Query: 524  ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKS----KLAILS 578
            A  P  H+S+ ++V P +KFK+ +++  RVL V  +  I VT KKTLV +       I++
Sbjct: 527  AFVPPLHISDTKLVYPERKFKIASKVKGRVLNVNDRGHIFVTLKKTLVNTTDDDDFTIIT 586

Query: 579  SYAEAT----DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
            SY +AT        T   + +    G  + F+ GV+GF P SE+       P     +GQ
Sbjct: 587  SYDDATAVKESNSKTIATVLQFRPAGAVISFFGGVRGFIPNSEISEAFVRRPEEHLRLGQ 646

Query: 635  VVKCRIMS-SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYV 689
             V  +++  S   SR +    +       + DL+K   L   ++DV     T  +V+V  
Sbjct: 647  TVIVKLLEVSGERSRIVGTCKVSAAKSAEQKDLIKSFVLGRTIIDVEVIEKTKESVLVE- 705

Query: 690  IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLIN 747
            +     +G I   HL+D  +E        I+ G +   L++ +D+++    +S K SLI 
Sbjct: 706  LKDSELRGVINVGHLSDSRIEQNRAELKKIRIGSKLRGLIIDIDSKTQIFNMSLKKSLIK 765

Query: 748  SAQQ--LPSDASHI---HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
             A++  LP +   I     ++ +HGYV ++   G FV F G+  G    + AV+ ++ D+
Sbjct: 766  DAEKEILPINYQQIVSVGKSTPLHGYVKSVSNKGVFVAFNGKFVGLVLPNFAVESRKIDI 825

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSL-----KQSCCSSTDASFMQEHFLLEEKIAMLQ 857
            +  YYV QSV + +L  +    R  LSL     KQ   + T AS +            + 
Sbjct: 826  NSIYYVNQSVTAYLLRFDDGKERFLLSLRDEKPKQKENTITPASLLNP----------VD 875

Query: 858  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH-------SDVYGFITH---- 906
            SS  N ++        +G  I+ K+       + V+  ++       ++VY  +      
Sbjct: 876  SSVSNFADC------TLGKFIKAKITAVKKNQLNVNIADNLFGRIHIAEVYDNLKQIKDA 929

Query: 907  -HQLAGATVESGSVIQAAILDV--------------AKAERLVDLSLKTVFIDRFREANS 951
             H L+   V  G ++   ++ +               KA+ +++L++K        E  S
Sbjct: 930  KHPLSNFKV--GDIVNVKVIGLHDFVNHKFVSKFSELKAKSILELTMKP------SEMKS 981

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
            N      + K   + DL V Q +   V  VK++ + LS+    H    A +S +N  +  
Sbjct: 982  N------EVKLLKASDLEVGQDIVGFVNNVKDSTIWLSITPSLH----ARLSSFNLTENS 1031

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD--VGSLVQA 1069
                 NG+S+I + + +            +K+I     S   + +  S  D  VGS V A
Sbjct: 1032 NDS--NGESLIGSALKVQ-----------IKSIDSKNNSLIVKTESDSVVDINVGSTVDA 1078

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1129
            +I ++    + L+   G +   +IT+  DD S  +  ++ N  I + + A ++A + + +
Sbjct: 1079 KIVKVTDKLVLLQLRNGSNAVSYITDALDDYSKTLPEVYGNM-ISKIIPATVLAFNAENN 1137

Query: 1130 MKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKA 1189
              K     LS++      S+    L     D+     V   V  V  +   + +S +L A
Sbjct: 1138 KIK-----LSLR------SKGAYSLPTVHTDLKPNDIVNAIVKNVTEKGIFVALSSNLDA 1186

Query: 1190 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1249
              F+  S    S L+E++  F   + V G V++     ++L L L+  +     + +   
Sbjct: 1187 --FVPISKLSDSYLKEWKAFFKPMQPVVGKVVTCANNSRIL-LTLKESEVNGEIQILKNY 1243

Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL--YGRVHFTELKNICVSDPLSGYD 1307
            ND     I  GDI  G +  +     G+ V++   L   G  H +E+      D  S   
Sbjct: 1244 ND-----IKVGDIFSGVVKNVAD--FGVFVKLDNTLNVSGLAHSSEVAESVPEDLQS--- 1293

Query: 1308 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL-----DGMSSTNSSDLSTD 1362
               F P      G  VK  VL+++   +    + LSL++S       G S+ +SSD   D
Sbjct: 1294 --LFGP------GDKVKAYVLKVNPEKK---QLSLSLKASHFSKTNSGKSANDSSDEDGD 1342

Query: 1363 V 1363
            V
Sbjct: 1343 V 1343



 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 194/811 (23%), Positives = 333/811 (41%), Gaps = 150/811 (18%)

Query: 732  NESSNLLLSAKYSLINSAQQLP-------SDASHI-HPNSVVHGYVCNIIETGCFVRFLG 783
            N+  ++ ++ K +L+N+             DA+ +   NS     V      G  + F G
Sbjct: 560  NDRGHIFVTLKKTLVNTTDDDDFTIITSYDDATAVKESNSKTIATVLQFRPAGAVISFFG 619

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
             + GF P S+  +       +   +GQ+V   +L+V+ E  RI  + K S   S +   +
Sbjct: 620  GVRGFIPNSEISEAFVRRPEEHLRLGQTVIVKLLEVSGERSRIVGTCKVSAAKSAEQKDL 679

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYG 902
                                     ++ F++G ++I+ +V E     V+V  ++ S++ G
Sbjct: 680  -------------------------IKSFVLGRTIIDVEVIEKTKESVLVELKD-SELRG 713

Query: 903  FITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
             I    L+ + +E           GS ++  I+D+    ++ ++SLK   I   ++A   
Sbjct: 714  VINVGHLSDSRIEQNRAELKKIRIGSKLRGLIIDIDSKTQIFNMSLKKSLI---KDAEKE 770

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSD 1004
                  ++     K   +H  V ++      V  N  ++ L LP +   +  I   S+  
Sbjct: 771  ILPINYQQIVSVGKSTPLHGYVKSVSNKGVFVAFNGKFVGLVLPNFAVESRKIDINSIYY 830

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-----KAISETETSSSKRAKKKS 1059
             N            QSV A ++         R LL L     K    T T +S      S
Sbjct: 831  VN------------QSVTAYLLRFDDGKE--RFLLSLRDEKPKQKENTITPASLLNPVDS 876

Query: 1060 SYD------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNF 1111
            S        +G  ++A+IT +K  +L +       GRIHI EV D+   +   ++  SNF
Sbjct: 877  SVSNFADCTLGKFIKAKITAVKKNQLNVNIADNLFGRIHIAEVYDNLKQIKDAKHPLSNF 936

Query: 1112 KIGQTVTARIIA---------KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
            K+G  V  ++I           S   ++K   + EL++KPS +  +E+    L +  D+ 
Sbjct: 937  KVGDIVNVKVIGLHDFVNHKFVSKFSELKAKSILELTMKPSEMKSNEVK---LLKASDLE 993

Query: 1163 IGQRVTGYVYKVDNE--WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +GQ + G+V  V +   W  +T S H +   F L      S  +       IG A+   +
Sbjct: 994  VGQDIVGFVNNVKDSTIWLSITPSLHARLSSFNLTENSNDSNGESL-----IGSALKVQI 1048

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             SI+ +     L+++   D + D             I+ G  V  +I K+   +  L ++
Sbjct: 1049 KSIDSKNN--SLIVKTESDSVVD-------------INVGSTVDAKIVKVTDKLVLLQLR 1093

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
             G +              ++D L  Y +     + G    + +   VL  +        +
Sbjct: 1094 NGSNAVS----------YITDALDDYSK-TLPEVYGNMISKIIPATVLAFNAE---NNKI 1139

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
            +LSLRS   G  S            P  H     DL PN IV   VKNVT KG F+ LS 
Sbjct: 1140 KLSLRSK--GAYSL-----------PTVHT----DLKPNDIVNAIVKNVTEKGIFVALSS 1182

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1460
             LDA V +S LSD Y++  +  F   + V G+V++    S R+ +TLK S+     Q  +
Sbjct: 1183 NLDAFVPISKLSDSYLKEWKAFFKPMQPVVGKVVTCANNS-RILLTLKESEVNGEIQI-L 1240

Query: 1461 NNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
             N +++ VGDI  G +K V  +G+F+ ++NT
Sbjct: 1241 KNYNDIKVGDIFSGVVKNVADFGVFVKLDNT 1271



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 130/318 (40%), Gaps = 43/318 (13%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
             D+++G  V   + KV ++  LL +     A  +I D+  + S+         I K +  
Sbjct: 1068 VDINVGSTVDAKIVKVTDKLVLLQLRNGSNAVSYITDALDDYSKTLPEVYGNMISKIIPA 1127

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             VL+ N E   ++L LR  +   S  TV        T +   DIV   +  +     G+ 
Sbjct: 1128 TVLAFNAENNKIKLSLRS-KGAYSLPTV-------HTDLKPNDIVNAIVKNVTEK--GIF 1177

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V +  +L   V  ++L     SD      +  F P+      Q V  KV+  +   R   
Sbjct: 1178 VALSSNLDAFVPISKL-----SDSYLKEWKAFFKPM------QPVVGKVVTCANNSR--- 1223

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             + L+L+ S              +V+   + L+   D+    I  G VKNV   G F+ L
Sbjct: 1224 -ILLTLKES--------------EVNGEIQILKNYNDIKVGDIFSGVVKNVADFGVFVKL 1268

Query: 1399 SRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD-SRTA 1455
               L+   L   S +++   E  +  F  G  V   VL V P  K++ ++LK S  S+T 
Sbjct: 1269 DNTLNVSGLAHSSEVAESVPEDLQSLFGPGDKVKAYVLKVNPEKKQLSLSLKASHFSKTN 1328

Query: 1456 SQSEINNLSNLHVGDIVI 1473
            S    N+ S+   GD+++
Sbjct: 1329 SGKSANDSSD-EDGDVIM 1345


>gi|444318932|ref|XP_004180123.1| hypothetical protein TBLA_0D00960 [Tetrapisispora blattae CBS 6284]
 gi|387513165|emb|CCH60604.1| hypothetical protein TBLA_0D00960 [Tetrapisispora blattae CBS 6284]
          Length = 1513

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 277/1175 (23%), Positives = 498/1175 (42%), Gaps = 172/1175 (14%)

Query: 36   DAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKK 95
            DA      +L  + D   FPRGG   LT  E  ++  E  ++    ++   K  K +  +
Sbjct: 19   DATTQPAQSLLKNSDEVSFPRGGSSVLTPLELKQVANEAASDVLFAQK--EKSTKSQSFE 76

Query: 96   TERKANETVDDLGSLFGDGISGKLPRYAN---KITLKNISAGMKLWGVVAEVNEKDLVIC 152
             +R   +      +   +  S +L    N    I  KN+  G  L G +    +KDL + 
Sbjct: 77   NDRPKKKKKITKKNKNSEASSTELDESVNVVEHINFKNLKVGSILLGQITSTTKKDLCVT 136

Query: 153  LPGGLRG---LARAADALDPILDN----------------EIEANEDNLLPTI---FHVG 190
               G+ G   +   +D +  IL++                E   ++ + LP +   F +G
Sbjct: 137  FTDGISGYVPITHISDHITHILEDIDDDMSDEEEKDECEKEENTHDFDELPNLNKYFKIG 196

Query: 191  QLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
            Q + C V++   LD   K+  K++I LS+  S++    S E +++   +   VKS+EDHG
Sbjct: 197  QWLRCSVIKNTALDAVSKKHHKKRIELSIEPSVV-NPFSAEDLEKHSTVQCSVKSLEDHG 255

Query: 248  YILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKV-VYLSSDPDTVSK 305
              L  GL + TGF+ + ++ +   +   PG + L  + +   R+  V    S+    VS 
Sbjct: 256  ATLDLGLENVTGFISKKDVPDFETL--LPGSVFLANIYKKSGRSIIVNTNFSAKNSKVSH 313

Query: 306  CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
                     SID +VPG MV      I  NG+        +  + I HL+ TF     K 
Sbjct: 314  IS-------SIDAVVPGQMVDFLCDDISSNGISGKIFGLVSSFIGISHLR-TFTEEELKE 365

Query: 366  DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
             Y+    +  RI+                LL+       V +    DQ  +V +D  +  
Sbjct: 366  TYSAGSNIKCRII--------------ASLLNKN--DERVLIVSTLDQ--IVSLDNNIAQ 407

Query: 426  LLDIPSTPV-----------STPAYVTISDVAEEEVRKLEKKYKEGSC-----VRVRILG 469
               I + P+           S   +V ++    E++     + K G       ++ R++G
Sbjct: 408  TEAIEAFPIGYTFDSASFLGSDSDFVYLA--LNEDLFGAVHRSKLGDIHISGDIQARVIG 465

Query: 470  FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCP 527
            +  ++ +       +A +      +D+  G +V G ++I V S G  ++ F G   A  P
Sbjct: 466  YNTIDKIYQLSTDPNALKLKYIRAADIPNGELVTGCEIINVSSDGIELKIFNGQFSAFVP 525

Query: 528  LPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEA--- 583
              H+S+ ++  P +KFK+G+++  R+L V K   I +T KK+LV  +  I+  Y  A   
Sbjct: 526  PLHISDVKLSYPERKFKIGSKIKGRILEVTKRGHIIMTLKKSLVNDENKIVDDYVSAKQL 585

Query: 584  -TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV------ 636
                  T   +   + +GC + F+ G++GF P SE+      +P     +GQ V      
Sbjct: 586  QNKNEKTVATVESFKPNGCLISFFGGLRGFLPNSEISEAFVRKPEQHLRLGQTVIIKILD 645

Query: 637  ----KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
                + R+++S  AS   +     +  +++ + LV   S++   V   T ++VVV   A 
Sbjct: 646  VDEKRFRVIASCKASNEDS-----QAQKLAIEKLVLGRSIIEVNVVEKTKDSVVVED-AD 699

Query: 693  GYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINS 748
               +G I   HL+D       AT+ K  IK G +   +++  ++ + +  LS K SLI+ 
Sbjct: 700  SNLRGVIYVGHLSDSRIEQNRATIKK--IKIGSKLTGVVIDKDDRTRVFNLSMKKSLIDD 757

Query: 749  AQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
            A+   LP   SD   +   + +HGY+ +I  TG FV F G+  G    S AV+ +  D++
Sbjct: 758  AKNKTLPISFSDIISLDKTTPLHGYIKSISNTGIFVAFNGKFVGLVLPSYAVESRDVDIN 817

Query: 804  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
            K++YV QSV S +L  + E  R  L+LK S    T  +            + +  S  N 
Sbjct: 818  KSFYVNQSVTSYLLRTDEENERFLLTLKNSKADQTSGA---------ANASAISQSTENL 868

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV--------E 915
              +K      +G  I  ++ + +   V++          FIT   L   +V        +
Sbjct: 869  DTIK------VGDKIPARIVKVSGKHVILDLGNKITGVSFIT-DALNDYSVSLSDEYQNK 921

Query: 916  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 975
                I A ++ +    + V+LSL+T               + K+   E+  D+     V+
Sbjct: 922  LNKTIDATVISINTKAKKVNLSLRT--------------NEAKQHLIESHNDIKQGDVVH 967

Query: 976  AIVEIVKEN----YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG-QSVIATVMALPS 1030
             +++ + ++    YL  ++  +   +  + +SD   + +  K+F N  Q VI  V++  S
Sbjct: 968  GLIKNINDSGVFIYLSTNIDAF---VPVSKLSDSYLKDW--KKFYNPLQHVIGKVVSCES 1022

Query: 1031 SSTAGRLLLLLKAISETETSSS-KRAKKKSSYDVGSLVQAEITEIKPLELRLKFG--IGF 1087
                 R+L+ L+   E+E +   K  K  SS +VG +    +  +    + +K    +  
Sbjct: 1023 DD---RILVTLR---ESEVNGDLKILKDYSSIEVGEIFNGNVKNVTDFGVFVKLDNTVNV 1076

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             G  H +E+ DDK  + ++L + F  G  V A ++
Sbjct: 1077 TGLAHKSEIADDK--IPDDLSALFGAGDRVKAIVL 1109



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 190/432 (43%), Gaps = 85/432 (19%)

Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP-----DMKKSFLWELSI 1140
               G I++  ++D +           KIG  +T  +I K ++       MKKS + +   
Sbjct: 701  NLRGVIYVGHLSDSRIEQNRATIKKIKIGSKLTGVVIDKDDRTRVFNLSMKKSLIDDAKN 760

Query: 1141 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP 1200
            K   ++ S+I S        +     + GY+  + N    +  +        +L S    
Sbjct: 761  KTLPISFSDIIS--------LDKTTPLHGYIKSISNTGIFVAFNGKFVG--LVLPSYAVE 810

Query: 1201 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--------VDISNDN 1252
            S   +  + F++ ++VT ++L  ++E +   L L+   +  +D+T        +  S +N
Sbjct: 811  SRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLK---NSKADQTSGAANASAISQSTEN 867

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1312
            + T I  GD +  RI K+ SG   +++ +G  + G V F       ++D L+ Y      
Sbjct: 868  LDT-IKVGDKIPARIVKV-SG-KHVILDLGNKITG-VSF-------ITDALNDY------ 910

Query: 1313 PLSGYDEGQ-----FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1367
             +S  DE Q      +   V+ I+   +    V LSLR+                 +   
Sbjct: 911  SVSLSDEYQNKLNKTIDATVISINTKAK---KVNLSLRT-----------------NEAK 950

Query: 1368 KHL-EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            +HL E   D+    +V G +KN+   G FI LS  +DA V +S LSD Y++  +K +   
Sbjct: 951  QHLIESHNDIKQGDVVHGLIKNINDSGVFIYLSTNIDAFVPVSKLSDSYLKDWKKFYNPL 1010

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRV 1479
            + V G+V+S E    R+ VTL+        +SE+N       + S++ VG+I  G +K V
Sbjct: 1011 QHVIGKVVSCES-DDRILVTLR--------ESEVNGDLKILKDYSSIEVGEIFNGNVKNV 1061

Query: 1480 ESYGLFITIENT 1491
              +G+F+ ++NT
Sbjct: 1062 TDFGVFVKLDNT 1073



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 122/564 (21%), Positives = 226/564 (40%), Gaps = 91/564 (16%)

Query: 443  SDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS---------AFEGLVFTH 493
            S+++E  VRK E+  + G  V ++IL             KAS         A E LV   
Sbjct: 619  SEISEAFVRKPEQHLRLGQTVIIKILDVDEKRFRVIASCKASNEDSQAQKLAIEKLVLGR 678

Query: 494  SDVKPGMVVKGK--VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG---KKFKVGAE 548
            S ++  +V K K  V+  D+          ++ +  + H+S+  I +     KK K+G++
Sbjct: 679  SIIEVNVVEKTKDSVVVEDA-------DSNLRGVIYVGHLSDSRIEQNRATIKKIKIGSK 731

Query: 549  LVFRVLGV--KSKRITVTHKKTLV---KSK-LAILSSYAEATDRLI-THGWITKIEKHGC 601
            L   V+    +++   ++ KK+L+   K+K L I  S   + D+    HG+I  I   G 
Sbjct: 732  LTGVVIDKDDRTRVFNLSMKKSLIDDAKNKTLPISFSDIISLDKTTPLHGYIKSISNTGI 791

Query: 602  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRIN 651
            FV F     G    S        + +  ++V Q V            R + ++  S+   
Sbjct: 792  FVAFNGKFVGLVLPSYAVESRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLKNSKADQ 851

Query: 652  LSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
             S     + +S+     D +K+G  +   +  V+   V++  +    +  +  T+ L D+
Sbjct: 852  TSGAANASAISQSTENLDTIKVGDKIPARIVKVSGKHVILD-LGNKITGVSFITDALNDY 910

Query: 708  L-----EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 762
                  E+   +   I        ++ ++ ++  + LS + +   + Q L    + I   
Sbjct: 911  SVSLSDEYQNKLNKTIDA-----TVISINTKAKKVNLSLRTN--EAKQHLIESHNDIKQG 963

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             VVHG + NI ++G F+     +  F P SK  D    D  K Y   Q V   ++   S+
Sbjct: 964  DVVHGLIKNINDSGVFIYLSTNIDAFVPVSKLSDSYLKDWKKFYNPLQHVIGKVVSCESD 1023

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              RI ++L++S  +  D   ++++  +E                       +G +  G V
Sbjct: 1024 -DRILVTLRESEVNG-DLKILKDYSSIE-----------------------VGEIFNGNV 1058

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLV 934
                DFGV V  +   +V G     ++A         A   +G  ++A +L V   ++ V
Sbjct: 1059 KNVTDFGVFVKLDNTVNVTGLAHKSEIADDKIPDDLSALFGAGDRVKAIVLRVNAEKKQV 1118

Query: 935  DLSLKTVFIDRFREANSNRQAQKK 958
             L LK  +   F   N N ++ +K
Sbjct: 1119 SLGLKASY---FSNDNYNEESNEK 1139



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 120/295 (40%), Gaps = 45/295 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA--YEPSELQEFQRRFHIGKAVTG 1218
            + +G ++   + KV  +  +L +   +    FI D+   Y  S   E+Q +  + K +  
Sbjct: 871  IKVGDKIPARIVKVSGKHVILDLGNKITGVSFITDALNDYSVSLSDEYQNK--LNKTIDA 928

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             V+SIN + K + L LR   +      ++  ND     I +GD+V G I  I     G+ 
Sbjct: 929  TVISINTKAKKVNLSLRT--NEAKQHLIESHND-----IKQGDVVHGLIKNI--NDSGVF 979

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            + +  ++   V  ++L +  + D    Y+     PL      Q V  KV+      R   
Sbjct: 980  IYLSTNIDAFVPVSKLSDSYLKDWKKFYN-----PL------QHVIGKVVSCESDDR--- 1025

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             + ++LR S              +V+   K L+    +    I  G VKNVT  G F+ L
Sbjct: 1026 -ILVTLRES--------------EVNGDLKILKDYSSIEVGEIFNGNVKNVTDFGVFVKL 1070

Query: 1399 SRKLDAKVLL--SNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
               ++   L   S ++D  + +     F  G  V   VL V    K+V + LK S
Sbjct: 1071 DNTVNVTGLAHKSEIADDKIPDDLSALFGAGDRVKAIVLRVNAEKKQVSLGLKAS 1125


>gi|295667623|ref|XP_002794361.1| rRNA biogenesis protein RRP5 [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226286467|gb|EEH42033.1| rRNA biogenesis protein RRP5 [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1815

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 218/858 (25%), Positives = 361/858 (42%), Gaps = 74/858 (8%)

Query: 52  PVFPRGGGHSLTQRERD--EIHAEVDAEFE----AVER--------GLHKKNKKKKKKTE 97
           PVFPRGGG+ LT  ER   +I A  D  FE    A E+        G HKK+ K      
Sbjct: 66  PVFPRGGGNILTPLERKQIQIQATRDVLFEQNGAAGEQDDNMDEADGGHKKSGKASGVKF 125

Query: 98  RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
           +K         +        K       +  K I  G K+ G V+ +N  D+ + LP  L
Sbjct: 126 KKVKSKAKKQAASED---PTKQAVRIEGLNFKRIVIGSKVLGQVSSINAHDIGLSLPNNL 182

Query: 158 RG---LARAADALDPILDNEIEANEDNL---------------LPTIFHVGQLVSCIVLQ 199
            G   L   +      ++  + +NED                 L + F +GQ +   V  
Sbjct: 183 TGYVPLTSISKTFQQKIEKLLNSNEDENEGSDDGGSDDEEDLDLKSYFKLGQYLRASVTA 242

Query: 200 LDDDKKEI---GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP- 255
            + + K     GK+ I LS+       GLS   +     + A V S+EDHG ++  GL  
Sbjct: 243 TESETKNPQTKGKKHIQLSVDPRDANSGLSKSDMVVNTTVQASVVSVEDHGLVMDLGLDD 302

Query: 256 -SFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTKDLK 312
               GF+    +  +  +  +K G +   VV   +    VV LS++ P   S   +  L 
Sbjct: 303 GQTKGFMSSKEIPPDLEVSQIKEGSVFLCVVTGHNANGSVVKLSANLPAAGSIKKSHYLT 362

Query: 313 GI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
              +I+  +PG      +  +   G+    +      VD+    +T  T +    Y+   
Sbjct: 363 SAPTINSFLPGTAAEILLNEVTSTGMAGKIMGMLDAVVDLVQSGSTTGTEDLTTKYHVGA 422

Query: 372 KVNARILFVDPTSRAVGL---------TLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDR 421
           K+  R++   PT   + L           +P +L   +    +  V  I  ++KV +V+ 
Sbjct: 423 KIKGRLICTFPTVEPLKLGFSILEHVVKFSPTVLDQYSTSEDIPAVSAIVPEAKVTKVEP 482

Query: 422 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481
           GLG+ +   +          +SD   + +   +  YK  S    RI+GF  L+ L     
Sbjct: 483 GLGVYVQFNNKLYGFVHISRLSDDKVDSISATKGPYKVDSTHEARIVGFSALDNLYLLSF 542

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEI 536
           +    +       DV  G VVKGK+       D   G IV    G+  L P  H+S+ ++
Sbjct: 543 ERKVIDQPFLRLEDVAVGAVVKGKIEKLLTGPDGIDGLIVSLADGISGLVPRMHLSDTKL 602

Query: 537 VKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
             P +KF+ GA++  R+L V  + +++ +T KK+L+ S+      Y +      + G I 
Sbjct: 603 QHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYGDILPGNQSPGTII 662

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            I  HG  V+FY  V+GF P SE+      +PS  + VGQVV    ++     R++ +S 
Sbjct: 663 SIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAELRKLVVS- 721

Query: 655 MMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--H 707
              P+  +E      + ++ G LVS  V   +   +++ +   G     +  EH+ D   
Sbjct: 722 CKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEDILLRLEGSGLV-ARLNAEHVTDGQS 780

Query: 708 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHIHPNS 763
            ++ + + + I+ G +   L++L  +  + L+  S K SL  + Q  +LP+    +    
Sbjct: 781 SKNGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGL 839

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            V G+V NII  G FV FL  LTGF P+    D   A  +  Y + Q++ S +  +  + 
Sbjct: 840 KVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPNFGYTLSQTISSFVHSIEDDR 899

Query: 824 GRITLSLKQSCCSSTDAS 841
            R  LSLK++  S    S
Sbjct: 900 QRFILSLKENQTSKQHVS 917



 Score =  167 bits (422), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 238/1004 (23%), Positives = 438/1004 (43%), Gaps = 127/1004 (12%)

Query: 542  KFKVGAELVFRVL----GVKSKRITVTHKKTLVKSKLAILSSYAEATD-----RLITHGW 592
            K+ VGA++  R++     V+  ++  +  + +VK    +L  Y+ + D      ++    
Sbjct: 417  KYHVGAKIKGRLICTFPTVEPLKLGFSILEHVVKFSPTVLDQYSTSEDIPAVSAIVPEAK 476

Query: 593  ITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            +TK+E   G +V+F N + GF   S L    +D        Y V    + RI+       
Sbjct: 477  VTKVEPGLGVYVQFNNKLYGFVHISRLSDDKVDSISATKGPYKVDSTHEARIVGFSALDN 536

Query: 649  RINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIP 700
               LSF  K    P    ED  V +G++V G ++  +  P+ +  ++  +A G S G +P
Sbjct: 537  LYLLSFERKVIDQPFLRLED--VAVGAVVKGKIEKLLTGPDGIDGLIVSLADGIS-GLVP 593

Query: 701  TEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
              HL+D  L+H    +   + G +   ++L ++ E   L L+ K SL+NS      +   
Sbjct: 594  RMHLSDTKLQHP---ERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYGD 650

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            I P +   G + +I   G  V+F G + GF P S+  +    D S+ + VGQ V  + L 
Sbjct: 651  ILPGNQSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALT 710

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
            V++E  ++ +S K     ST     +  F                      E    G ++
Sbjct: 711  VHAELRKLVVSCKDP---STSTETYKNAF----------------------ENIQPGDLV 745

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938
               V E +   +++  E    V      H   G + ++GS + A I    K   LV LS+
Sbjct: 746  SCTVFEKSKEDILLRLEGSGLVARLNAEHVTDGQSSKNGSAL-ACIRVGQKLHDLVILSM 804

Query: 939  KTVF-IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHS 996
            + V  + +     S +QA+++       +DL     V   V+ I+ +   V  L      
Sbjct: 805  QKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGLKVTGFVKNIIADGLFVEFLRGLTGF 864

Query: 997  IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 1056
            +    + D +  K P   +   Q++ + V ++       R +L LK    ++   S  A+
Sbjct: 865  LPKRLMDDDHVAK-PNFGYTLSQTISSFVHSIEDDRQ--RFILSLKENQTSKQHVSDNAR 921

Query: 1057 KKS---------------SYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
              S               S+D    G + +A+I  +K  ++ ++      GRI ++E+ D
Sbjct: 922  PASNANQSSINPVDGDIKSFDDLTFGRITKAKIVSVKETQINVQLADNIQGRIDVSEIFD 981

Query: 1099 DKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTV 1147
            +   + +       FK  Q +  RI+    A+S+K  P   +S    ++ELS KPS L  
Sbjct: 982  EWDAIKDRKQPLRYFKPKQIIPVRIVGIHDARSHKFLPISHRSGKYPVYELSAKPSSLES 1041

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
            ++I    L     V IG    G++  + ++   + IS +++ +L I D + + S + +  
Sbjct: 1042 NDIE---LLSLDKVEIGSSWLGFINNIGDDCLWVNISPNVRGRLRITDVSDDLSLVGDVT 1098

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + F +G A+  HV  +N +K  L L         S K  D  N    +   +G+I+ GR+
Sbjct: 1099 KNFPVGSAIKVHVTGVNVDKNRLDL---------SAKHGDPPNKRTISDFSKGEILLGRV 1149

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1327
            +K+      ++VQ+     G ++  ++                 D  +      F K +V
Sbjct: 1150 TKVSER--QVLVQLSDTTVGAINLIDMA----------------DDYTKVIPANFHKNEV 1191

Query: 1328 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1387
            L +         V++  +  L  +S   S  LS+ +      ++ I  L  N IV+G+V+
Sbjct: 1192 LRVC-----ILDVDVPNKKIL--LSVRPSRVLSSSLPIEDPEIKSISQLKVNDIVRGFVR 1244

Query: 1388 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
             V + G F+ L  ++ A V +S+LSD Y++  + EF + +LV GR++ V+  + +++++L
Sbjct: 1245 RVANNGLFVTLGHEVTAYVRISDLSDSYLKEWQPEFQVDQLVRGRIIFVDAEANKLQMSL 1304

Query: 1448 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            K S      ++ I  + +L+ G IV G+++ VE +G FI I+ T
Sbjct: 1305 KESVLEPNYKAPI-TIRDLNRGQIVTGRVRSVEEFGAFIVIDGT 1347



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 124/281 (44%), Gaps = 42/281 (14%)

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
            S +  G ++   +T++   ++ ++      G I++ ++ DD + V+    +NF   + + 
Sbjct: 1137 SDFSKGEILLGRVTKVSERQVLVQLSDTTVGAINLIDMADDYTKVIP---ANFHKNEVLR 1193

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV-SIGQR-----VTGYVY 1172
              I+   + P+ K      LS++PS +    + S L  E+ ++ SI Q      V G+V 
Sbjct: 1194 VCIL-DVDVPNKK----ILLSVRPSRV----LSSSLPIEDPEIKSISQLKVNDIVRGFVR 1244

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            +V N    +T+   + A + I D     S L+E+Q  F + + V G ++ ++ E   L++
Sbjct: 1245 RVANNGLFVTLGHEVTAYVRISD--LSDSYLKEWQPEFQVDQLVRGRIIFVDAEANKLQM 1302

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
             L+        ++V   N      I +   G IV GR+  +      +V+    +L G  
Sbjct: 1303 SLK--------ESVLEPNYKAPITIRDLNRGQIVTGRVRSVEEFGAFIVIDGTANLSGLC 1354

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            H TE+    V            D    +++G  VK K+++I
Sbjct: 1355 HRTEMAEQKVE-----------DARKLFEKGDIVKAKIVKI 1384



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 12/216 (5%)

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            +L+  +  +D   K + LS  P  V  S    +D +  SI  L    +V   V+ +  NG
Sbjct: 1191 VLRVCILDVDVPNKKILLSVRPSRVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNG 1250

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + ++     T  V I  L +++    W+ ++   + V  RI+FVD  +  + ++L   +L
Sbjct: 1251 LFVTLGHEVTAYVRISDLSDSY-LKEWQPEFQVDQLVRGRIIFVDAEANKLQMSLKESVL 1309

Query: 397  --HNRAPPSHVKVGDIYDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
              + +AP   + + D+     V   VR     G  + I  T  +       +++AE++V 
Sbjct: 1310 EPNYKAP---ITIRDLNRGQIVTGRVRSVEEFGAFIVIDGT-ANLSGLCHRTEMAEQKVE 1365

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
               K +++G  V+ +I+   H +   +  LKAS F+
Sbjct: 1366 DARKLFEKGDIVKAKIVKIDHDKERISLGLKASYFK 1401


>gi|307107853|gb|EFN56095.1| hypothetical protein CHLNCDRAFT_145628 [Chlorella variabilis]
          Length = 1396

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 240/534 (44%), Gaps = 82/534 (15%)

Query: 101 NETVDDLGSLF-GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
            E  D+  + F G  + GKLP++   +  KN+S G KLWG V EV+ ++LV+ LP GLRG
Sbjct: 64  GEGGDEEDAFFSGLALQGKLPKFVELLKFKNLSRGCKLWGAVIEVSPRELVVSLPHGLRG 123

Query: 160 LARAADALDPILDNE-------------------------------IEANEDNLLPTI-- 186
               A+A D +                                     A  + +LP +  
Sbjct: 124 HVAYAEASDWLAGQSKAAAAAGAEAAGEDGAAAIAAAAAGKKRKAGTAAATEVVLPPLTD 183

Query: 187 -FHVGQLVSCIVLQLDDDKK----------------------EIGKRKIWLSLRLSLLYK 223
            F +GQLV   V+ L                              K+++ LSLR+S +  
Sbjct: 184 LFTIGQLVRGTVVALRSGSSGDSESAGKAGAKKAAAAEGGAGGAKKKRVDLSLRVSKMNA 243

Query: 224 GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
           GL  E+++EG+ L A V S+EDHGY+L  G+   +GFLP+   A          LL   V
Sbjct: 244 GLGPESLREGLALPACVSSVEDHGYLLALGVKGVSGFLPKKAAAAAGRALAPGMLLDVAV 303

Query: 284 VRSIDRTRKVVYLS-----SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
                        S       P+ V+  V ++ +G++I  L+PG +V+ RV+++L +G++
Sbjct: 304 PPGGAPKPAGGGGSVLGVVCAPEAVAMAVAREWEGLNIGSLLPGQLVAARVRNVLSDGLL 363

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            SFLTYF+GTVD FHL       +W+  ++ ++++ ARIL+VDP S+ V LTL+ +L+  
Sbjct: 364 CSFLTYFSGTVDPFHLGADL-AADWRKQFSPNQRLRARILYVDPASKRVALTLHRHLISA 422

Query: 399 RAPPSHVKVGDIYDQ------SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
             P +   +G +  +        V RV+   GLL+ + S   S  A V +   ++    K
Sbjct: 423 SLPVNFPMLGQVDVRPGMPVSGTVSRVEE-YGLLVALTS---SIRALVPVLHASDVGTAK 478

Query: 453 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
             +K+K G  V  ++L         T  LK S        +    D  PG    G V   
Sbjct: 479 ALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGSKLPPIARTQDAVPGGRSHGVVTGA 538

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIV---KPGKKFKVGAELVFRVLGVKSKR 560
             FG  V F GGV  L    H+SE  +    KP + F+ G  +  RVLG    R
Sbjct: 539 RDFGVFVSFFGGVTGLA---HVSECGLAADQKPPEAFQAGQVVKCRVLGADPSR 589



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 162/653 (24%), Positives = 285/653 (43%), Gaps = 93/653 (14%)

Query: 753  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
            PS    +   +++ GYV ++     FVRFL  LTG A  ++  D   +D    +  GQSV
Sbjct: 754  PSAVEAVAEGALLAGYVASVTSGAVFVRFLDGLTGRAGLAQLSDTFVSDPHLFFREGQSV 813

Query: 813  RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
            R+ ++D   +  R +++LKQS C S DA+++Q  F     +   ++  ++ +++ W   F
Sbjct: 814  RATVVDAQRQ--RFSVALKQSLCGSRDAAYLQSLF---SDLEAAEALSNDAADVDWA-AF 867

Query: 873  IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL-AGATVESGSVIQAAILDVAKAE 931
             IG +  G+VHE+  +G++   E H+DV G +  HQ+ AGA+ E G+ ++A +LD  K E
Sbjct: 868  AIGGIAPGEVHEAKGYGLICDLEAHADVVGLVAPHQMPAGASREPGTSVRAVVLDANKRE 927

Query: 932  RLVDLSLKTVFIDRFR-----------EANSNRQAQKKKRKREASKDLGVHQTVNAIVEI 980
             +VDLSL+   +   +                ++      K  A+ +L   Q +   VE+
Sbjct: 928  GVVDLSLQPRLVAAAQAAAAAADAETAPKKKKQKKAAVGGKAAAAAELKEGQRLECKVEL 987

Query: 981  VKE--NYLVLSLPEYNHS------IGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSS 1031
            VKE   Y V++LP  + S      +G+   +D+N Q +  Q+    G S+ A+V ALPS 
Sbjct: 988  VKEEAGYCVVTLPAADGSPTGSPLLGFLPTTDFNLQYQQHQQPPRPGDSLTASVAALPSP 1047

Query: 1032 STAGRLLLLLK---------------AISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
            +T GRLLL                    ++   S  ++A++   +  GS V+A +     
Sbjct: 1048 ATGGRLLLAAPVGGKPVKPAAAAGGTGAAKRPQSDKQQAQRMQQHATGSCVEATV----- 1102

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
                        G +H    + D   +   +     +G+  TA         + ++  + 
Sbjct: 1103 ------------GAVHALHADLDLDKLAVAV-----LGRVTTA---------EGRRHSVL 1136

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECD----VSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            E S +P  ++ +  G  L    C     +  GQ++ GYV  V         S  ++ + F
Sbjct: 1137 ECSSRPEAVSAARAGQALPRHPCPALAALRPGQQLQGYVQDVQQGHVWCAFSPSVRGRAF 1196

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
               +A    E +   +RF  G+ V   V+ ++K++K L + L      +       S   
Sbjct: 1197 ATQAASSIEECERLGKRFKPGQPVQATVVHVDKKRKALDVSL------LPAAPEAASEAA 1250

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF- 1311
                   G +  GR+S +  G GG+ V++     GRV  T++ +  V + L+G   GQ+ 
Sbjct: 1251 AAGAPAPGTVALGRVSAV--GGGGVRVRLSARSVGRVALTDIHDGAVEECLAGLQAGQYC 1308

Query: 1312 -------DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
                   D  +  D GQ    +      +      + LSLR S  G  + + +
Sbjct: 1309 QAVVLGPDTSASPDSGQEASGRKRGGRSSGAAAGQLLLSLRPSAGGRCAAHGA 1361



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 2/168 (1%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           DV+PGM V G V  V+ +G +V     ++AL P+ H S+    K  +KFK G  +  +VL
Sbjct: 435 DVRPGMPVSGTVSRVEEYGLLVALTSSIRALVPVLHASDVGTAKALRKFKAGQTVAGKVL 494

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V   +K++T+T K +LV SKL  ++   +A     +HG +T     G FV F+ GV G 
Sbjct: 495 TVDPATKKVTMTLKPSLVGSKLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFGGVTGL 554

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
           A  SE GL    +P   +  GQVVKCR++ + P+ + + LS + KP +
Sbjct: 555 AHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLSLVTKPKK 602



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P M V G V  V   G  + L+  + A V + + SD       ++F  G+ VAG+VL
Sbjct: 435  DVRPGMPVSGTVSRVEEYGLLVALTSSIRALVPVLHASDVGTAKALRKFKAGQTVAGKVL 494

Query: 1435 SVEPLSKRVEVTLKTS 1450
            +V+P +K+V +TLK S
Sbjct: 495  TVDPATKKVTMTLKPS 510



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 21/136 (15%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E ++   ++ GYV +VTS   F+     L  +  L+ LSD +V  P   F  G+ V  R
Sbjct: 757  VEAVAEGALLAGYVASVTSGAVFVRFLDGLTGRAGLAQLSDTFVSDPHLFFREGQSV--R 814

Query: 1433 VLSVEPLSKRVEVTLKTS--DSRTAS--QSEINNL---------------SNLHVGDIVI 1473
               V+   +R  V LK S   SR A+  QS  ++L               +   +G I  
Sbjct: 815  ATVVDAQRQRFSVALKQSLCGSRDAAYLQSLFSDLEAAEALSNDAADVDWAAFAIGGIAP 874

Query: 1474 GQIKRVESYGLFITIE 1489
            G++   + YGL   +E
Sbjct: 875  GEVHEAKGYGLICDLE 890



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 22/241 (9%)

Query: 602 FVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL-------- 652
           F+ +++G V  F     LG D   +    +   Q ++ RI+   PAS+R+ L        
Sbjct: 366 FLTYFSGTVDPF----HLGADLAADWRKQFSPNQRLRARILYVDPASKRVALTLHRHLIS 421

Query: 653 -SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
            S  +    + + D V+ G  VSG V  V    ++V + +    +  +P  H +D +  A
Sbjct: 422 ASLPVNFPMLGQVD-VRPGMPVSGTVSRVEEYGLLVALTSS--IRALVPVLHASD-VGTA 477

Query: 712 TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYV 769
             ++          ++L +D  +  + ++ K SL+ S  +LP  A      P    HG V
Sbjct: 478 KALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGS--KLPPIARTQDAVPGGRSHGVV 535

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
               + G FV F G +TG A  S+          + +  GQ V+  +L  +     + LS
Sbjct: 536 TGARDFGVFVSFFGGVTGLAHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLS 595

Query: 830 L 830
           L
Sbjct: 596 L 596



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            I  L P  +V   V+NV S G            V   +L         K+F   + +  R
Sbjct: 341  IGSLLPGQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGADLAADWRKQFSPNQRLRAR 400

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV--GDIVIGQIKRVESYGLFITIEN 1490
            +L V+P SKRV +TL       +       L  + V  G  V G + RVE YGL + + +
Sbjct: 401  ILYVDPASKRVALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEEYGLLVALTS 460

Query: 1491 T 1491
            +
Sbjct: 461  S 461



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 32/275 (11%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G LV A +  +    L   F   F G +    +  D   +  +    F   Q + ARI+ 
Sbjct: 347  GQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGAD---LAADWRKQFSPNQRLRARIL- 402

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
                P  K+     L++   +++ S   +  +  + DV  G  V+G V +V+    L+ +
Sbjct: 403  -YVDPASKRV---ALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEEYGLLVAL 458

Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
            +  ++A + +L ++   +   +  R+F  G+ V G VL+++   K + + L+P   G   
Sbjct: 459  TSSIRALVPVLHASDVGTA--KALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGSKL 516

Query: 1244 KTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSD 1301
              +  + D          + GGR   +++G    G+ V     + G  H +E        
Sbjct: 517  PPIARTQDA---------VPGGRSHGVVTGARDFGVFVSFFGGVTGLAHVSE-------- 559

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
               G    Q  P   +  GQ VKC+VL    + +G
Sbjct: 560  --CGLAADQ-KPPEAFQAGQVVKCRVLGADPSRKG 591


>gi|225559332|gb|EEH07615.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus G186AR]
          Length = 1817

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 206/842 (24%), Positives = 360/842 (42%), Gaps = 62/842 (7%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNK-KKKKKTERKANETVDDLGSL 110
           P FPRGG   L+  E+ +IH +   +    ++G   ++    +  T++K +     + S 
Sbjct: 68  PAFPRGGADILSPLEQKQIHIQATRDVLFEQKGAQAQDDIDNEDGTQKKQSSKEFGIKSR 127

Query: 111 FGDGISGK--LPRYANK-------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-- 159
            G   S K  +P+ + K       +  K I  G K+ G V+ +N  D+ + LP  L G  
Sbjct: 128 KGKTKSKKHTIPQASTKEEVRIEGLNFKRIVVGSKILGQVSSINAHDIGLSLPNNLTGYI 187

Query: 160 -LARAADALDPILDNEIEANEDNLL--------------PTIFHVGQLVSCIVLQLDDD- 203
            L   +  L   ++  + ++++                  + F +GQ +   V   + + 
Sbjct: 188 PLTAVSKTLQQKIEKLLNSSQEEDDNSDGDDDGDDDLDLKSYFKLGQYLRAAVTSTETEV 247

Query: 204 --KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTG 259
              K  GK+ I LS+       GLS   +     + A V S+EDHG ++  GL      G
Sbjct: 248 NHGKIKGKKHIELSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMDLGLEDGQTRG 307

Query: 260 FLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISI 316
           F+    +  +   + +K G +   VV   +    VV LS++  T              +I
Sbjct: 308 FMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGSVVKLSANLPTAGSIKKSHFLTSAPTI 367

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
           +  +PG      +  +   G+    +      VDI     T    +    Y+   K+  R
Sbjct: 368 NSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGATAGKEDITARYHVGAKIKGR 427

Query: 377 ILFVDPTSRAVGL---------TLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLL 426
           ++   PT+  + L            P +L +++    V  +  I  + KV +V+ GLG+ 
Sbjct: 428 LICTFPTAEPLKLGFSILDHVVKFTPTVLDHKSSCEGVPAISAIVPEVKVTKVEPGLGVY 487

Query: 427 LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
           +              +SD   + +   +  Y   S    RI+GF  L+ L    L+    
Sbjct: 488 VQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVGFSALDNLYLLSLERKVI 547

Query: 487 EGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +       DV  G VVKGK+    I  D   G IV    G+  L P  HMS+ ++  P K
Sbjct: 548 DQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEK 607

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G ++  R+L V  + +++ +T KKTL+ S+ +    Y++      + G I  I+ H
Sbjct: 608 KFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYSDILPGNQSPGTIISIQSH 667

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMK 657
           G  V+FY  V+GF P SE+      +P+  +++GQVV    ++     R++ +S    + 
Sbjct: 668 GAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDADFRKLVVSCKDQLS 727

Query: 658 PTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 714
            T   +  L  +  G+ VSG V   +   +++ +   G     +  EH++D         
Sbjct: 728 STEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLV-ARLNAEHVSDGQASRNGAA 786

Query: 715 KSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVC 770
            + I+ G + ++LL+L+ + S+ L+  + K SL  + Q  +LP+    +   S V G+V 
Sbjct: 787 LARIRVGQKLNELLILNMQKSHRLIKVTNKPSLKQARQRGELPAKFEDLEEGSKVTGFVK 846

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           NII  G FV FLG LTGF P+    D      S  Y + Q +   +  +  +  R  L+L
Sbjct: 847 NIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSFGYALAQPISLTVQSIEDDRQRFILTL 906

Query: 831 KQ 832
           K+
Sbjct: 907 KE 908



 Score =  150 bits (379), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 218/954 (22%), Positives = 412/954 (43%), Gaps = 138/954 (14%)

Query: 593  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 648
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 477  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 533

Query: 649  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 699
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 534  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 592

Query: 700  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 593  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 649

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 650  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 709

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            +V+++  ++ +S K    S+       EH              H G+             
Sbjct: 710  NVDADFRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 744

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 927
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 745  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 804

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 986
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 805  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 854

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 855  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 911

Query: 1047 TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 1088
             +   S R K+ ++ +                   G + +A++  IK  ++ ++      
Sbjct: 912  GKQRVSDRDKESNNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 971

Query: 1089 GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1137
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 972  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1031

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1032 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1088

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1089 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1139

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
             +G+I+ GR++++      ++VQ+   + G ++  ++                 D  S  
Sbjct: 1140 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDMA----------------DDYSKI 1181

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
            +   F K ++L +         +++  +  L  M S+     S  +  P   +  I  + 
Sbjct: 1182 NPADFHKNEILRVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIK 1234

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
             N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +
Sbjct: 1235 VNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILAD 1294

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            P S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I+ T
Sbjct: 1295 PESNKLQMSLKQSVLDPNYKTPI-TIKDLKRGQTVTGKVRNVEEFGAFIVIDGT 1347



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1134 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNEIL 1192

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 423
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1193 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1251

Query: 424  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1252 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1306

Query: 484  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 538
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1307 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1366

Query: 539  PGKKFKVG 546
              K F+ G
Sbjct: 1367 ARKLFEKG 1374


>gi|256271623|gb|EEU06665.1| Rrp5p [Saccharomyces cerevisiae JAY291]
 gi|323347043|gb|EGA81319.1| Rrp5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1729

 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 309/1346 (22%), Positives = 576/1346 (42%), Gaps = 185/1346 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALDP----ILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKGVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  V   +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++ +      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKN 1296
               G+ V++    ++ G  H TE+ +
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score =  154 bits (388), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 223/858 (25%), Positives = 366/858 (42%), Gaps = 156/858 (18%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKGVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I   D + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1305 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKINN-----VIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1473
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1474 GQIKRVESYGLFITIENT 1491
            G IK V  +G+F+ ++NT
Sbjct: 1270 GTIKNVTDFGVFVKLDNT 1287



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 153/368 (41%), Gaps = 59/368 (16%)

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
               RI + ++ D+ SN  EN+ S F +G  +  ++ +     D +  F            
Sbjct: 1026 LKARISLLDLADNDSNFSENIESVFPLGSALQVKVAS----IDREHGF------------ 1069

Query: 1147 VSEIG-SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
            V+ IG S +      + +   + G V K+  ++ LL +   +    FI D+  + S   +
Sbjct: 1070 VNAIGKSHVDINMSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLK 1129

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFIHEGDIVG 1264
                  I   +   VLS++++ K + L LR      + KT  I S+++++    +G+IV 
Sbjct: 1130 EAFEDKINNVIPTTVLSVDEQNKKIELSLR----SATAKTRSIKSHEDLK----QGEIVD 1181

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1324
            G +  +     G+ V +   +   V  ++L +  + +    Y   Q      Y  G+ V 
Sbjct: 1182 GIVKNV--NDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQ------YVLGKVVT 1233

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
            C   E SR       + L+LR S              +++   K L+   D+    + +G
Sbjct: 1234 CD--EDSR-------ISLTLRES--------------EINGDLKVLKTYSDIKAGDVFEG 1270

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVL--LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
             +KNVT  G F+ L   ++   L  ++ ++D   E     F +G  V   VL   P  K+
Sbjct: 1271 TIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQ 1330

Query: 1443 VEVTLKTS 1450
            + ++LK S
Sbjct: 1331 ISLSLKAS 1338



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 39/331 (11%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 278
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
             LQ  V SIDR    V      + + K  V  ++  I +D  +PG     RV  I E  V
Sbjct: 1055 ALQVKVASIDREHGFV------NAIGKSHVDINMSTIKVDDELPG-----RVLKIAEKYV 1103

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNP 393
            +L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L  
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRS 1160

Query: 394  YLLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
                 R+  SH  +K G+I D       D+G+ + L          A+V +S +++  ++
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLK 1215

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 508
            + +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  
Sbjct: 1216 EWKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKN 1274

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
            V  FG  V+    V  +  L H++E    KP
Sbjct: 1275 VTDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|452986595|gb|EME86351.1| hypothetical protein MYCFIDRAFT_45277 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 1795

 Score =  180 bits (456), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 219/897 (24%), Positives = 386/897 (43%), Gaps = 133/897 (14%)

Query: 1   MAASSRKS---QKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRG 57
           M+A  RK+   ++ S K      K  +++ K  +K ++++ E + L      +   FPRG
Sbjct: 1   MSAVKRKAVTDERPSKKAKSSEAKDEQSKEKRPRKSVDNSGEKRVLKSILQTEERSFPRG 60

Query: 58  GGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGIS- 116
           G   LT  E  +I A+  AE +A            KK+ E    +++DD   LF D    
Sbjct: 61  GAGPLTALENKQIQAQ--AERDA------------KKELETGQQQSLDD-EDLFDDAADE 105

Query: 117 -----------------GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
                            G + R    +T KN++ G  + G +  + ++D+ + LP  + G
Sbjct: 106 SRSKKKRKSDAKKGKSEGTITRIQG-LTYKNLTVGSVVLGRITAITDRDIALALPNNMTG 164

Query: 160 LARAADALDPILDNEIE----ANEDNL-------LPTIFHVGQLVSCIVLQL---DDDKK 205
            A+   ++ P +++++E    A E++        L  +FH+GQ +   V       ++ K
Sbjct: 165 YAKIT-SISPKVNSKLEQIMLAEEEDAEEHGDVDLKELFHIGQWLRAAVTATATEPEEGK 223

Query: 206 EIGK------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSF 257
           + GK      + I LS+  +     LS ++V     + A V+S+EDHG ++  GL     
Sbjct: 224 DKGKGQSKPKKHIELSIEPAATNGRLSADSVVTHSTIQASVRSVEDHGLVMDVGLIEEHA 283

Query: 258 TGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRT----RKVVYLSSDPDTVSKC-----V 307
           TGF+ +  L     +   K G ++  +V   D+     RKV+ LS D + ++       V
Sbjct: 284 TGFIAKKALGAAWELSKAKEGQVMLCLV--TDKVGGDGRKVLKLSPDFNKLNGSQSNAPV 341

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
             D    ++D  +PG + +  V  +   G+    +     T D  H  N     +    +
Sbjct: 342 VSD--APTVDAFLPGTLANVLVTEVTPLGIAGKIMGLLDVTADTVH-SNAVGVEDMSKKF 398

Query: 368 NQHKKVNARILFVDPT---SRAVGLTLNPYLLHNRAPPSHVK------------------ 406
               K+ ARI +  P    S  VG++L  ++L     P+ +                   
Sbjct: 399 KIGSKLKARITYALPQVDESTKVGVSLLDHVLALTPAPTKLPGNATFKLKAQAKEIEQAL 458

Query: 407 -VGDIYDQSKVVRVDRGLGLLLDIPSTP----VSTPAYVTISDVAEEEVRKLEK---KYK 458
            +  I D++KV RV    G+ L +         +  A+  IS ++++ +  L      YK
Sbjct: 459 PLSKILDEAKVTRVLSQQGVFLAVSRKEGRGERTITAFAHISQLSDQHIDTLSSTSGSYK 518

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF------ 512
            G+  + R+L +  ++ +    LK S  +       D+K G  VKG   +VD        
Sbjct: 519 PGTVHKARVLSYNPIDDIYRVSLKQSVLDQAFLRLEDLKVGQTVKG---SVDKLIYGSKS 575

Query: 513 ---GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
              G +V+    V  L P  H+S+ ++  P  KF+ G+E+  RVL V  + ++I +T KK
Sbjct: 576 GVTGILVKLSDNVNGLVPEMHLSDTQLRFPESKFRAGSEVKARVLSVHPEERQIRLTLKK 635

Query: 568 TLVKS-KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           +L++    ++   Y +    + + G I  +  +G  ++FY  V+ + P +E+       P
Sbjct: 636 SLLEDDSTSLWKDYHDLEPGMTSRGTIIALHDNGAVIQFYGAVRAWLPVAEMSESWIESP 695

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTP 682
           S  Y +GQ V  RI+S  P + R+ ++         E     D +  G LVS  V   T 
Sbjct: 696 SEFYRLGQTVNVRIVSVSPEAERMKVTCKDGGDFTQEQSDAWDRIHGGELVSACVTEKTA 755

Query: 683 NAVVVYVIAKGYSKGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLLVLDNE--SSNLL 738
           +++++  +  G  KG I   HL D+ E    + MK  I+ G +   LLVLD +  S  ++
Sbjct: 756 DSILLD-LDHGL-KGIIRLGHLVDNSEAKAQSAMKR-IRVGEKLKNLLVLDKQERSRTVV 812

Query: 739 LSAKYSLINSAQ---QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
           LS K S++  A    +L    S   P    HG+V NI +   +  F   + G   +S
Sbjct: 813 LSNKPSMVKDAAKPGKLIKSFSDARPGIKFHGFVRNITQDSVYAEFPNGVVGLITKS 869



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 238/1088 (21%), Positives = 439/1088 (40%), Gaps = 189/1088 (17%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV- 556
            PG +    V  V   G   +  G +       H +   +    KKFK+G++L  R+    
Sbjct: 353  PGTLANVLVTEVTPLGIAGKIMGLLDVTADTVHSNAVGVEDMSKKFKIGSKLKARITYAL 412

Query: 557  ----KSKRITVT---HKKTL--VKSKL---AILSSYAEATD--------RLITHGWITKI 596
                +S ++ V+   H   L    +KL   A     A+A +        +++    +T++
Sbjct: 413  PQVDESTKVGVSLLDHVLALTPAPTKLPGNATFKLKAQAKEIEQALPLSKILDEAKVTRV 472

Query: 597  -EKHGCFV-------RFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIP 645
              + G F+       R    +  FA  S+L    +D     S  Y  G V K R++S  P
Sbjct: 473  LSQQGVFLAVSRKEGRGERTITAFAHISQLSDQHIDTLSSTSGSYKPGTVHKARVLSYNP 532

Query: 646  ASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAVVVYVIAK--GYSKGT 698
                  +S    ++    +  +DL K+G  V G VD  +    + V  ++ K      G 
Sbjct: 533  IDDIYRVSLKQSVLDQAFLRLEDL-KVGQTVKGSVDKLIYGSKSGVTGILVKLSDNVNGL 591

Query: 699  IPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLI-NSAQQLPSDA 756
            +P  HL+D        +S  + G E   ++L +  E   + L+ K SL+ + +  L  D 
Sbjct: 592  VPEMHLSD--TQLRFPESKFRAGSEVKARVLSVHPEERQIRLTLKKSLLEDDSTSLWKDY 649

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
              + P     G +  + + G  ++F G +  + P ++  +      S+ Y +GQ+V   I
Sbjct: 650  HDLEPGMTSRGTIIALHDNGAVIQFYGAVRAWLPVAEMSESWIESPSEFYRLGQTVNVRI 709

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            + V+ E  R    +K +C    D  F QE     ++I        +G EL          
Sbjct: 710  VSVSPEAER----MKVTCKDGGD--FTQEQSDAWDRI--------HGGEL---------- 745

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
             +   V E     +++  +     +G     +L      S +  Q+A+  +   E+L +L
Sbjct: 746  -VSACVTEKTADSILLDLD-----HGLKGIIRLGHLVDNSEAKAQSAMKRIRVGEKLKNL 799

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
                + +D                K+E S+ + +    + + +  K   L+ S  +    
Sbjct: 800  ----LVLD----------------KQERSRTVVLSNKPSMVKDAAKPGKLIKSFSDARPG 839

Query: 997  IGYASVSDYNTQKFPQKQFLNGQ-SVIATVMALPSSS----------------------T 1033
            I +       TQ     +F NG   +I   + LP  S                      T
Sbjct: 840  IKFHGFVRNITQDSVYAEFPNGVVGLITKSLLLPEMSNQPSFGLRRDQTLTVWVTDVDLT 899

Query: 1034 AGRLLLLLK---AISETETSSSKRAKKK-------------SSYDVGSLVQAEITEIKPL 1077
              R LL ++     ++TETS ++ A +              + + +G++V+A I  +K  
Sbjct: 900  RQRFLLTMREPGQSAQTETSENRNATESDVKNAVDPAISSMADFALGTVVKARIASVKAT 959

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQ--TVTARIIAKSNKPDMK-- 1131
            ++ ++      GR+ ++EV D   ++        N K+ Q  T+  +I+   +    +  
Sbjct: 960  QINVRLADNVQGRVDVSEVFDSWDDITNKAAPLQNDKLKQNDTIDVKILGIHDARSHRFL 1019

Query: 1132 -------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                   K  ++ELS KPS +     G + L     V  G     +V    +      +S
Sbjct: 1020 PISHRGGKVPVFELSAKPSRV---RGGDESLLAMDSVKQGASYLAFVNNHSDNCVWANLS 1076

Query: 1185 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             +++ ++ ++D + +  +LQ  + RF +G A+   V S++     L L  +   + ++ K
Sbjct: 1077 PNVRGRVSLMDLSDDVGQLQNVENRFRVGCALQVKVKSVDTTSNKLDLTAK---ENLTRK 1133

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             + +           G +V  R++KI     G+ V I   +   V   EL +        
Sbjct: 1134 ELSL-----------GMVVPARVTKI--SEHGITVMIADDIVCHVPLVELSD-------- 1172

Query: 1305 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1364
              D  Q +P      GQ  K +V+ +         V LSL      +S   S  LS+ + 
Sbjct: 1173 --DYDQTNP------GQHRKNEVVRVCV-------VGLSLPDKRVFVSLRPSKVLSSSLP 1217

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1424
                H+ +   L P  IV+G+VK V  KG F+ L  ++DA V +S+LSD +V+     + 
Sbjct: 1218 VKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVHISDLSDQFVKDWPSIYE 1277

Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1484
            + +LV GRV++V+  S +V+++LK S      Q  +  + +L  G  V G++++VE +G 
Sbjct: 1278 VNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPPM-TIHDLKQGMTVTGKVRKVEDFGA 1336

Query: 1485 FITIENTN 1492
            F+ I+NT 
Sbjct: 1337 FVDIDNTQ 1344



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 32/198 (16%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            ++AS + P ++V G+V  + E G FV    R+      S   D    D    Y V Q V+
Sbjct: 1224 TEASQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVHISDLSDQFVKDWPSIYEVNQLVQ 1283

Query: 814  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
              ++ V++ +G++ LSLK+S   +     M  H L +                       
Sbjct: 1284 GRVVTVDAASGQVQLSLKRSHVDNDYQPPMTIHDLKQ----------------------- 1320

Query: 874  IGSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE-------SGSVIQAAIL 925
             G  + GKV +  DFG  V  +     + G     ++A   +E       SG V++A +L
Sbjct: 1321 -GMTVTGKVRKVEDFGAFVDIDNTQPRLSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKVL 1379

Query: 926  DVAKAERLVDLSLKTVFI 943
             V    R + L LK  + 
Sbjct: 1380 SVDPDSRKISLGLKASYF 1397



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 122/301 (40%), Gaps = 34/301 (11%)

Query: 189  VGQL--------VSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
            VGQL        V C  LQ+     +    K+ L+ + +L  K LSL     GMV+ A V
Sbjct: 1092 VGQLQNVENRFRVGC-ALQVKVKSVDTTSNKLDLTAKENLTRKELSL-----GMVVPARV 1145

Query: 241  KSIEDHG--------YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK 292
              I +HG         + H  L   +    + N  ++   +V     ++  V  +    K
Sbjct: 1146 TKISEHGITVMIADDIVCHVPLVELSDDYDQTNPGQHRKNEV-----VRVCVVGLSLPDK 1200

Query: 293  VVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
             V++S  P  V  S    KD        L PG +V   V+ + E G+ +S  +     V 
Sbjct: 1201 RVFVSLRPSKVLSSSLPVKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVH 1260

Query: 351  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDI 410
            I  L + F   +W + Y  ++ V  R++ VD  S  V L+L    + N   P  + + D+
Sbjct: 1261 ISDLSDQF-VKDWPSIYEVNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPP-MTIHDL 1318

Query: 411  YDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
                 V   VR     G  +DI +T          S+VA + +  + K Y  G  V+ ++
Sbjct: 1319 KQGMTVTGKVRKVEDFGAFVDIDNTQPRLSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKV 1378

Query: 468  L 468
            L
Sbjct: 1379 L 1379



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 39/328 (11%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGL 278
            L++++V++G    A+V +  D+    +   P+  G +   +L+++ G         + G 
Sbjct: 1048 LAMDSVKQGASYLAFVNNHSDNCVWANLS-PNVRGRVSLMDLSDDVGQLQNVENRFRVGC 1106

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             LQ  V+S+D T   + L     T  + +T+  K +S+     GM+V  RV  I E+G+ 
Sbjct: 1107 ALQVKVKSVDTTSNKLDL-----TAKENLTR--KELSL-----GMVVPARVTKISEHGIT 1154

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK---VNARILFVDPTSRAVGLTLNPYL 395
            +         V +  L + +  TN      QH+K   V   ++ +    + V ++L P  
Sbjct: 1155 VMIADDIVCHVPLVELSDDYDQTN----PGQHRKNEVVRVCVVGLSLPDKRVFVSLRPSK 1210

Query: 396  LHNRAPP---SHVKVGDIYDQSKVVR--VDR--GLGLLLDIPSTPVSTPAYVTISDVAEE 448
            + + + P   +H+          +VR  V R    G+ + + S      A V ISD++++
Sbjct: 1211 VLSSSLPVKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGS---RVDALVHISDLSDQ 1267

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKGK 505
             V+     Y+    V+ R++      G     LK S  +       T  D+K GM V GK
Sbjct: 1268 FVKDWPSIYEVNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPPMTIHDLKQGMTVTGK 1327

Query: 506  VIAVDSFGAIVQFPGGVKALCPLPHMSE 533
            V  V+ FGA V        L  L H SE
Sbjct: 1328 VRKVEDFGAFVDIDNTQPRLSGLCHRSE 1355



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +KPG +V+G V  V   G  V     V AL  +  +S+  +      ++V   +  RV
Sbjct: 1227 SQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVHISDLSDQFVKDWPSIYEVNQLVQGRV 1286

Query: 554  LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--- 608
            + V   S ++ ++ K++ V +      +  +    +   G + K+E  G FV   N    
Sbjct: 1287 VTVDAASGQVQLSLKRSHVDNDYQPPMTIHDLKQGMTVTGKVRKVEDFGAFVDIDNTQPR 1346

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMMKPTRVSED 664
            + G   RSE+      +    Y  G VVK +++S  P SR+I+L    S+      +SED
Sbjct: 1347 LSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKVLSVDPDSRKISLGLKASYFSNEAEISED 1406

Query: 665  D 665
            +
Sbjct: 1407 E 1407



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 152/370 (41%), Gaps = 61/370 (16%)

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIG---QTVTARIIAKSNKPDMKKSFLWELSIKPSM 1144
             GR+ + +++DD   + +N+ + F++G   Q     +   SNK D+              
Sbjct: 1080 RGRVSLMDLSDDVGQL-QNVENRFRVGCALQVKVKSVDTTSNKLDLT------------- 1125

Query: 1145 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1204
                   +K      ++S+G  V   V K+      + I+  +   + +++ + +  +  
Sbjct: 1126 -------AKENLTRKELSLGMVVPARVTKISEHGITVMIADDIVCHVPLVELSDDYDQTN 1178

Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1264
              Q R +  + V   V+ ++   K + + LRP +   S   V  ++    + +  G IV 
Sbjct: 1179 PGQHRKN--EVVRVCVVGLSLPDKRVFVSLRPSKVLSSSLPVKDAHITEASQLKPGAIVR 1236

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD-PLSGYDEGQFDPLSGYDEGQFV 1323
            G + ++     G+ V +G  +   VH ++L +  V D P            S Y+  Q V
Sbjct: 1237 GFVKRVAEK--GIFVSLGSRVDALVHISDLSDQFVKDWP------------SIYEVNQLV 1282

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            + +V+ +      +  V+LSL+ S               VD   +    I DL   M V 
Sbjct: 1283 QGRVVTVDA---ASGQVQLSLKRS--------------HVDNDYQPPMTIHDLKQGMTVT 1325

Query: 1384 GYVKNVTSKGCFIMLSR---KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            G V+ V   G F+ +     +L      S ++   +E   K +  G +V  +VLSV+P S
Sbjct: 1326 GKVRKVEDFGAFVDIDNTQPRLSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKVLSVDPDS 1385

Query: 1441 KRVEVTLKTS 1450
            +++ + LK S
Sbjct: 1386 RKISLGLKAS 1395


>gi|401885552|gb|EJT49659.1| rRNA processing-related protein [Trichosporon asahii var. asahii
           CBS 2479]
          Length = 1478

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 209/837 (24%), Positives = 366/837 (43%), Gaps = 92/837 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG SLT  E  +  AE   + +A E G   K  KKKK + R+  +   +  +   D
Sbjct: 41  FPRGGGTSLTALEVKQTRAEGARQADA-EMG---KTFKKKKLSTRQMQKAKKEKATAESD 96

Query: 114 GISGKLPR---YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
               +  +      +++ K +  G  +   V  V    LV+ +P  L G   +   ++ L
Sbjct: 97  AAKAERDKDTIRVEELSYKRLVPGTLVLARVHTVLPLHLVVSMPNNLLGHIPITEVSNTL 156

Query: 168 DPILDNEIEANEDNL------------LPTIFHVGQLVSCIVLQLDDDKKE--IGKRKIW 213
              L+ +I+A  ++             L  IF  GQ +   V+       +  I +  + 
Sbjct: 157 TAALNADIDAMSEDEDEEDEEKEGAPELTDIFRPGQYIPTRVINTFPTASQAFIAQYPVS 216

Query: 214 LSLRLSLLYK----------GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG---- 259
            + RL+   +           ++ + V++G  +   V   ED GY +  GL + TG    
Sbjct: 217 ETTRLAARVELTAVPEKINLDVAKQDVEKGYRIVGEVLGAEDKGYRVGLGLSADTGLAGV 276

Query: 260 --FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
             F+P   + +N+G  + PG L+  VV  +    +VV L+ DP T+      ++  I   
Sbjct: 277 EGFIPIEEVEKNAGGALIPGQLIPTVVSEVKAGGRVVKLTLDPQTLIHSSLTEVSNIGS- 335

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            L+PG + S  V +++ +G+ +    ++ GT+DI HL       + ++ YN  KK+ ARI
Sbjct: 336 -LLPGQLASCLVTAVVPSGLNVKICGFYDGTIDIAHL--GLGEDDIEDRYNIGKKIKARI 392

Query: 378 LF--VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLL 426
           L+  V  + R   L+  P++ +  +P +          + VG      KV+RV    G  
Sbjct: 393 LYDTVASSERRFALSALPHIFNLASPVAADGETPLEIAIPVGKTLPSVKVIRVIPDWG-- 450

Query: 427 LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
             +P+   ST                   ++K G+  R R++G   L+G+     +    
Sbjct: 451 -RVPTLSNST------------------GQFKVGTYHRARVIGHSPLDGVMLLSFEEKVL 491

Query: 487 EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
             +     ++  G V+KG V  +   G  V   G V  +    H ++  +  P K+FKVG
Sbjct: 492 NQVFMQVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVG 551

Query: 547 AELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
           A +  RV  ++    R+ +T KK+LV+S L +  S+A+ T   IT   ++KI   GC V 
Sbjct: 552 ASVKARVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVD 611

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK-PTRVSE 663
            + G++ F P+SE   +     + ++ VG+ V  RI      S+++  S     PT V+ 
Sbjct: 612 LFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAA 671

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGY 722
           + L ++GS VSG+V  +    VVV +I    +   +   +L++H       ++  +K G 
Sbjct: 672 EKL-EVGSDVSGIVAQIHAEQVVVTLIPSQLT-ALLSLANLSNHRGMGVDELRKSLKVGE 729

Query: 723 EFDQLLVLD-NESSNLLL----SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
           + + L+V+  N +S L++     AK  +         +   I    V+ G V +    G 
Sbjct: 730 KLEDLVVVSKNATSGLIIVANKRAKKGIPTGISTPARNFDAIAVGDVLPGRVISKTPQGA 789

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNILDVNSETGRITLSLKQS 833
            VR   ++ G    + A D    DLS     V   V   +L V++E+  I LS ++S
Sbjct: 790 MVRLGKKIRGRVAPTDASD----DLSAPGLKVDDDVLCCVLKVDAESRAIDLSTRKS 842



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 212/504 (42%), Gaps = 87/504 (17%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLV 1067
            K P+K+F  G SV A V A+  +    R++L LK ++ E++               GS  
Sbjct: 542  KHPEKRFKVGASVKARVFAIEPARN--RVVLTLKKSLVESDLPVP-----------GSFA 588

Query: 1068 QAEITEIKPLELRLKFGIG-----FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
                 EI P  +      G     F G       ++  +N V NL   F +G+ V  RI 
Sbjct: 589  DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRIT 648

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
                  D+ +     ++     L  +    KL        +G  V+G V ++  E  ++T
Sbjct: 649  ------DVDEHSQKLVASVRQALPTAVAAEKL-------EVGSDVSGIVAQIHAEQVVVT 695

Query: 1183 -ISRHLKAQLFILD-SAYEPSELQEFQRRFHIGK-----------AVTGHVLSINKEKKL 1229
             I   L A L + + S +    + E ++   +G+           A +G ++  NK  K 
Sbjct: 696  LIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAK- 754

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
                 +    GIS    +         I  GD++ GR+  I     G +V++G  + GRV
Sbjct: 755  -----KGIPTGISTPARNFDA------IAVGDVLPGRV--ISKTPQGAMVRLGKKIRGRV 801

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
              T+      SD LS           G      V C VL++    R    ++LS R S  
Sbjct: 802  APTD-----ASDDLSA---------PGLKVDDDVLCCVLKVDAESRA---IDLSTRKS-- 842

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
                         VD     +    DL     V+G VKNV   G F+ L R + A+V++ 
Sbjct: 843  ---RVQPYSAPAIVDA---EINSTADLKAGQSVRGIVKNVAPNGLFVALGRSVTARVMIK 896

Query: 1410 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1469
             L D +V+  +  F +G +V+G++LSV     RVE+TL+T   +  +++++  L++   G
Sbjct: 897  ELFDDFVKDWKARFAVGDVVSGKILSVG--DDRVEMTLRTKPRKAGAETKL-TLADFKEG 953

Query: 1470 DIVIGQIKRVESYGLFITIENTNL 1493
              V   +KRVES+GLF+ I+ +++
Sbjct: 954  QKVEATVKRVESFGLFLRIDGSDV 977



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 19/227 (8%)

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVT 681
           +  + VG   + R++   P    + LSF  K       +V E   + +G ++ G V  ++
Sbjct: 459 TGQFKVGTYHRARVIGHSPLDGVMLLSFEEKVLNQVFMQVGE---LTIGQVLKGTVRKLS 515

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
              + V V  +G   G +   H AD    H E    + + +K      ++  ++   + +
Sbjct: 516 DKGLFVNV--QGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA-----RVFAIEPARNRV 568

Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           +L+ K SL+ S   +P   + +    +    V  I++ GC V   G L  F P+S+A   
Sbjct: 569 VLTLKKSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTN 628

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
             A+L+  ++VG++V   I DV+  + ++  S++Q+  ++  A  ++
Sbjct: 629 YVANLNDVFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAAEKLE 675



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            ++ +L+   +++G V+ ++ KG F+ +   +D  V   + +D  ++ PEK F +G  V  
Sbjct: 497  QVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA 556

Query: 1432 RVLSVEPLSKRVEVTLKTS 1450
            RV ++EP   RV +TLK S
Sbjct: 557  RVFAIEPARNRVVLTLKKS 575


>gi|207342136|gb|EDZ69994.1| YMR229Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1729

 Score =  179 bits (455), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 309/1346 (22%), Positives = 576/1346 (42%), Gaps = 185/1346 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALDP----ILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  V   +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++ +      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKN 1296
               G+ V++    ++ G  H TE+ +
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 223/858 (25%), Positives = 366/858 (42%), Gaps = 156/858 (18%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I   D + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1305 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKINN-----VIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1473
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1474 GQIKRVESYGLFITIENT 1491
            G IK V  +G+F+ ++NT
Sbjct: 1270 GTIKNVTDFGVFVKLDNT 1287



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 153/368 (41%), Gaps = 59/368 (16%)

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
               RI + ++ D+ SN  EN+ S F +G  +  ++ +     D +  F            
Sbjct: 1026 LKARISLLDLADNDSNFSENIESVFPLGSALQVKVAS----IDREHGF------------ 1069

Query: 1147 VSEIG-SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
            V+ IG S +      + +   + G V K+  ++ LL +   +    FI D+  + S   +
Sbjct: 1070 VNAIGKSHVDINMSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLK 1129

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFIHEGDIVG 1264
                  I   +   VLS++++ K + L LR      + KT  I S+++++    +G+IV 
Sbjct: 1130 EAFEDKINNVIPTTVLSVDEQNKKIELSLR----SATAKTRSIKSHEDLK----QGEIVD 1181

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1324
            G +  +     G+ V +   +   V  ++L +  + +    Y   Q      Y  G+ V 
Sbjct: 1182 GIVKNV--NDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQ------YVLGKVVT 1233

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
            C   E SR       + L+LR S              +++   K L+   D+    + +G
Sbjct: 1234 CD--EDSR-------ISLTLRES--------------EINGDLKVLKTYSDIKAGDVFEG 1270

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVL--LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
             +KNVT  G F+ L   ++   L  ++ ++D   E     F +G  V   VL   P  K+
Sbjct: 1271 TIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQ 1330

Query: 1443 VEVTLKTS 1450
            + ++LK S
Sbjct: 1331 ISLSLKAS 1338



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 39/331 (11%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 278
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
             LQ  V SIDR    V      + + K  V  ++  I +D  +PG     RV  I E  V
Sbjct: 1055 ALQVKVASIDREHGFV------NAIGKSHVDINMSTIKVDDELPG-----RVLKIAEKYV 1103

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNP 393
            +L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L  
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRS 1160

Query: 394  YLLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
                 R+  SH  +K G+I D       D+G+ + L          A+V +S +++  ++
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLK 1215

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 508
            + +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  
Sbjct: 1216 EWKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKN 1274

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
            V  FG  V+    V  +  L H++E    KP
Sbjct: 1275 VTDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|258573391|ref|XP_002540877.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901143|gb|EEP75544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1819

 Score =  179 bits (455), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 218/849 (25%), Positives = 370/849 (43%), Gaps = 86/849 (10%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEV-----------------DAEFEAVERGLHKKNKK 91
           D+ P FPRGG ++LT  ER +I  +                  DA+ E  E+    + K+
Sbjct: 73  DEAPAFPRGGNNALTPLERKQIQIQATRDVLFEQKGASNGELPDADSEIEEQA--DEEKE 130

Query: 92  KKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVI 151
              K  RK  +   +  S+ G   S + P+  + ++ K I+ G KL G V  +   D+ +
Sbjct: 131 ATLKPSRKKQKDKKNKKSVEGTAKS-QGPKIES-LSFKQITPGSKLLGQVTNIGTHDISL 188

Query: 152 CLPGGLRGLARAADALDPILDNEIE--------------ANEDNLLPTIFHVGQLVSCIV 197
            LP  L G      A+  +L  ++E               ++D  L +   +GQ     V
Sbjct: 189 ALPNNLTGYIPWT-AVSKLLKEKVEKLLKDADKEDDEESDDDDFDLKSYVRLGQYFRASV 247

Query: 198 --LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 255
                +++K    K++I LS+       GLS   +     + A V S+ED+G I+  GL 
Sbjct: 248 SSTTANNEKGGRSKKRIELSIDPREANSGLSRSDMIIDSTVQASVISVEDYGLIMDVGLE 307

Query: 256 S--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD 310
                GF+    L   +G D   VK G +   VV   +    V+ LS++ +  +      
Sbjct: 308 DGETRGFMSSKELP--AGTDFSQVKEGAVFLCVVTGHNTAGNVIKLSANLEKAASGKKSH 365

Query: 311 L--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
                 +I+  +PG      V  +  NG+    +      VD  H  +T    +    Y 
Sbjct: 366 YISSAPTINTFLPGTAAEILVTEVTPNGMAGKIMGMLDTMVDSVHSGSTDDKRDLTKKYR 425

Query: 369 QHKKVNARILFVDPTSRA--VGLTLNPYLLH------NRAPPSHVK--VGDIYDQSKVVR 418
              KV  RI++   +     +G ++  ++L       + A  S  +  +  I  + KV +
Sbjct: 426 LGTKVKGRIIYRVSSDEKPKLGFSILDHVLKFSLTTVDAAQDSKRRPAISAIIPEVKVTK 485

Query: 419 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEG 475
           VD  LGL + + +T      +V IS V + ++  L   E  +K GS    R++GF  ++ 
Sbjct: 486 VDPALGLYVQLGTT--EHLGFVHISRVKDGKISSLSPTEGSFKVGSSHEGRVVGFNAMDN 543

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPH 530
           L    L+ +  +       DV  G +VKGK+    I  D   G IV    G+  L P  H
Sbjct: 544 LFLLSLEKNIIDQPFLRLEDVTVGAIVKGKIEKLLIGPDGINGLIVSLADGISGLIPGMH 603

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
           M++ ++  P KKF+ G E+  R+L V  + +++ +T KK+L+ S+  I   Y + +    
Sbjct: 604 MADTKLQHPEKKFREGLEVTARILSVNLEKRQLRLTLKKSLLHSESTIWKDYKDISPGNQ 663

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
           + G +  I+ +G  V+FY  V+GF P SE+      +PS  + VGQVV   ++S      
Sbjct: 664 SPGTLVSIQNNGAVVQFYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKG 723

Query: 649 RINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
           R+ +S    P+ V+E      + V+ G LVSGVV   + + +++  +  G     +  E 
Sbjct: 724 RLVVS-CKDPSTVTEAYRGALESVRPGQLVSGVVFEKSSDDLLLK-LEDGGLIARLSAEQ 781

Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
           L+D         S  K    F ++ V    S         S   +  +LP+    +  NS
Sbjct: 782 LSDS--------SPSKAASNFARIRVGAKASWPFNTQHTESSPPNPGKLPAKFEELQLNS 833

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSE 822
            V G V NI   G FV FL  LTGF P+ + VD + ++ +   ++  Q++  ++  +  +
Sbjct: 834 SVTGLVKNITADGIFVEFLEGLTGFLPK-RLVDDEHSNRTDFGFMRSQTISCSVSSIEQD 892

Query: 823 TGRITLSLK 831
           T R  L++K
Sbjct: 893 TQRFILTMK 901



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 200/860 (23%), Positives = 384/860 (44%), Gaps = 117/860 (13%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V +G++V G ++  ++ P+ +  ++  +A G S G IP  H+AD  L+H    +   + G
Sbjct: 564  VTVGAIVKGKIEKLLIGPDGINGLIVSLADGIS-GLIPGMHMADTKLQHP---EKKFREG 619

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             E   ++L ++ E   L L+ K SL++S   +  D   I P +   G + +I   G  V+
Sbjct: 620  LEVTARILSVNLEKRQLRLTLKKSLLHSESTIWKDYKDISPGNQSPGTLVSIQNNGAVVQ 679

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + VGQ V  N+L V+SE GR+ +    SC    D 
Sbjct: 680  FYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRLVV----SC---KDP 732

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            S + E +               G+    +E    G ++ G V E +   +++  E+   +
Sbjct: 733  STVTEAY--------------RGA----LESVRPGQLVSGVVFEKSSDDLLLKLEDGG-L 773

Query: 901  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
               ++  QL+ ++    +   A I   AKA               F   ++        +
Sbjct: 774  IARLSAEQLSDSSPSKAASNFARIRVGAKASW------------PFNTQHTESSPPNPGK 821

Query: 961  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 1020
                 ++L ++ +V  +V+ +  + + +   E         + D          F+  Q+
Sbjct: 822  LPAKFEELQLNSSVTGLVKNITADGIFVEFLEGLTGFLPKRLVDDEHSNRTDFGFMRSQT 881

Query: 1021 VIATVMALPSSSTAGRLLLLLKAIS-ETETSSSKRAKKKS--------------SYD--- 1062
            +  +V ++   +   R +L +K +  + E  S ++   +S              S+D   
Sbjct: 882  ISCSVSSIEQDTQ--RFILTMKPVEIKDEGKSHRQGTTRSAGLSVANPVDEDIKSFDDLE 939

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTAR 1120
             G   +A+IT +K  +L +       GRI ++E+ D+  ++ +       FK  Q V  +
Sbjct: 940  FGKCTKAKITSVKDTQLNVLLADNVQGRIDVSEIFDNWEDIKDRKQPLRPFKAKQIVPVK 999

Query: 1121 IIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            ++   +    K         K+ ++ELS KPS L   E    L  E+  V +G  + G++
Sbjct: 1000 VLGIHDARTHKFLPISHRSGKTPMFELSTKPSTLASPEY-EPLTIEK--VKVGSSLLGFI 1056

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
                ++   L IS +++ +L I+D + + +   + ++ F IG A+   V +++ +K  L 
Sbjct: 1057 NNFGDDCLWLNISPNVRGKLRIMDISDDLALAGDIKKTFPIGSALKVTVTAVDVDKNRLD 1116

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L  R    G S KT+ IS+      + +G I+ G+++K+       +VQ+   L G +  
Sbjct: 1117 LTAR---HGESSKTLTISD------LSKGMILLGKVTKVTERQA--LVQLNDSLVGAIGL 1165

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
             ++                 D  S  +  +F K +VL +         V++ + +    +
Sbjct: 1166 IDMA----------------DDYSKINPAKFHKNEVLRVCV-------VDVDVPNKKVSL 1202

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
            S   S  LS+ +      +  ++ L    IV+G+V+ V   G F+ML   + A V +S+L
Sbjct: 1203 SVRPSKVLSSSLPVEDPEITSVDKLKVGDIVRGFVRKVADVGLFVMLGHNVTAYVRVSDL 1262

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1471
            SD Y++  + EF + ++V GR+  V+  + +V++TLK S      +  +  LS+L  G I
Sbjct: 1263 SDAYLKEWQDEFQVDQIVRGRITLVDTEAGKVQMTLKQSALDPNYKPPL-QLSDLKQGQI 1321

Query: 1472 VIGQIKRVESYGLFITIENT 1491
            V G++++VE +G F+TI+ T
Sbjct: 1322 VTGKVRKVEEFGAFVTIDGT 1341



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 190/430 (44%), Gaps = 51/430 (11%)

Query: 170  ILDN--EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRL 218
            I DN  +I+  +  L P  F   Q+V   VL + D +           GK  ++ LS + 
Sbjct: 973  IFDNWEDIKDRKQPLRP--FKAKQIVPVKVLGIHDARTHKFLPISHRSGKTPMFELSTKP 1030

Query: 219  SLL----YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI-- 272
            S L    Y+ L++E V+ G  L  ++ +  D    L+   P+  G L   +++++  +  
Sbjct: 1031 STLASPEYEPLTIEKVKVGSSLLGFINNFGDDCLWLNIS-PNVRGKLRIMDISDDLALAG 1089

Query: 273  DVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
            D+K     G  L+  V ++D  +  + L++     SK +T       I  L  GM++  +
Sbjct: 1090 DIKKTFPIGSALKVTVTAVDVDKNRLDLTARHGESSKTLT-------ISDLSKGMILLGK 1142

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
            V  + E   ++       G + +  + + +   N    +++++ +   ++ VD  ++ V 
Sbjct: 1143 VTKVTERQALVQLNDSLVGAIGLIDMADDYSKIN-PAKFHKNEVLRVCVVDVDVPNKKVS 1201

Query: 389  LTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            L++ P  + + + P           +KVGDI         D GL ++L    T     AY
Sbjct: 1202 LSVRPSKVLSSSLPVEDPEITSVDKLKVGDIVRGFVRKVADVGLFVMLGHNVT-----AY 1256

Query: 440  VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDV 496
            V +SD+++  +++ + +++    VR RI       G     LK SA +         SD+
Sbjct: 1257 VRVSDLSDAYLKEWQDEFQVDQIVRGRITLVDTEAGKVQMTLKQSALDPNYKPPLQLSDL 1316

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            K G +V GKV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L
Sbjct: 1317 KQGQIVTGKVRKVEEFGAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKAKIL 1376

Query: 555  GVKSKRITVT 564
             V +++  ++
Sbjct: 1377 KVDTEKAQIS 1386



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 31/196 (15%)

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            +V G+V  + + G FV     +T +   S   D    +    + V Q VR  I  V++E 
Sbjct: 1232 IVRGFVRKVADVGLFVMLGHNVTAYVRVSDLSDAYLKEWQDEFQVDQIVRGRITLVDTEA 1291

Query: 824  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
            G++ ++LKQS         +Q                   S+LK       G ++ GKV 
Sbjct: 1292 GKVQMTLKQSALDPNYKPPLQL------------------SDLKQ------GQIVTGKVR 1327

Query: 884  ESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDL 936
            +  +FG  V+ +  +++ G     ++A   V       E G +++A IL V   +  + L
Sbjct: 1328 KVEEFGAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKAKILKVDTEKAQISL 1387

Query: 937  SLKTVFIDRFREANSN 952
             LK  + +   EA+S+
Sbjct: 1388 GLKASYFNEDSEADSD 1403



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 128/303 (42%), Gaps = 53/303 (17%)

Query: 1201 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL------RPFQDGISDKTVDISNDNMQ 1254
            S L   +  F +G +  G V+  N    L  L L      +PF   + D TV        
Sbjct: 516  SSLSPTEGSFKVGSSHEGRVVGFNAMDNLFLLSLEKNIIDQPFLR-LEDVTV-------- 566

Query: 1255 TFIHEGDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                 G IV G+I K+L    G+ GL+V +   + G +    + +  +  P     E +F
Sbjct: 567  -----GAIVKGKIEKLLIGPDGINGLIVSLADGISGLIPGMHMADTKLQHP-----EKKF 616

Query: 1312 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1371
                   EG  V  ++L ++   R    + L+L+ SL    ST   D             
Sbjct: 617  R------EGLEVTARILSVNLEKR---QLRLTLKKSLLHSESTIWKDY------------ 655

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
              +D+SP     G + ++ + G  +     +   + +S +S+ Y++ P + F +G++V+ 
Sbjct: 656  --KDISPGNQSPGTLVSIQNNGAVVQFYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSV 713

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
             VLSV+    R+ V+ K  D  T +++    L ++  G +V G +    S  L + +E+ 
Sbjct: 714  NVLSVDSEKGRLVVSCK--DPSTVTEAYRGALESVRPGQLVSGVVFEKSSDDLLLKLEDG 771

Query: 1492 NLV 1494
             L+
Sbjct: 772  GLI 774



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 131/314 (41%), Gaps = 63/314 (20%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G ++  ++T++   +  ++      G I + ++ DD S +    F   ++ +     +  
Sbjct: 1136 GMILLGKVTKVTERQALVQLNDSLVGAIGLIDMADDYSKINPAKFHKNEVLRVCVVDV-- 1193

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS------IGQRVTGYVYKVDNE 1177
              + P+ K S    LS++PS +    + S L  E+ +++      +G  V G+V KV + 
Sbjct: 1194 --DVPNKKVS----LSVRPSKV----LSSSLPVEDPEITSVDKLKVGDIVRGFVRKVADV 1243

Query: 1178 WALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
               + +  ++ A + + D   AY    L+E+Q  F + + V G +  ++ E   +++ L+
Sbjct: 1244 GLFVMLGHNVTAYVRVSDLSDAY----LKEWQDEFQVDQIVRGRITLVDTEAGKVQMTLK 1299

Query: 1236 ----------PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285
                      P Q  +SD             + +G IV G++ K+      + +    +L
Sbjct: 1300 QSALDPNYKPPLQ--LSD-------------LKQGQIVTGKVRKVEEFGAFVTIDGTANL 1344

Query: 1286 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1345
             G  H +E+    V+           D    Y++G  VK K+L++         + L L+
Sbjct: 1345 SGLCHRSEMAEQKVA-----------DARKLYEQGDLVKAKILKVDTE---KAQISLGLK 1390

Query: 1346 SSLDGMSSTNSSDL 1359
            +S     S   SD+
Sbjct: 1391 ASYFNEDSEADSDM 1404


>gi|328874880|gb|EGG23245.1| hypothetical protein DFA_05377 [Dictyostelium fasciculatum]
          Length = 822

 Score =  179 bits (455), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 258/558 (46%), Gaps = 45/558 (8%)

Query: 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN 181
           ++ ++   +I AGM L G    V +  +V+ LP G+RG  +  +  D          +DN
Sbjct: 180 FSTRLYSSDIYAGMVLLGAFEMVTDSFIVVSLPFGIRGYVKFNEISDEFTKWSNSVMKDN 239

Query: 182 L---------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS 226
           +               + T+F  G L+   V+ + D KK    + +  +LR  ++ K  +
Sbjct: 240 IKYKSNFQKTDSILERIKTMFIKGHLLKVAVMGISDMKK----KGLLCTLRPEVINKESN 295

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNL-----AENSGIDVKP---- 276
           +    EGM +   V+S++D GYI+ FG      GFL   +         S +D       
Sbjct: 296 IGNFTEGMNIYGSVQSVQDKGYIISFGSGFEHKGFLKFEDTKFYWPTTTSNVDASTATET 355

Query: 277 ----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
               G  L+  + +I  + K+V +S     VS+  TKD   I+   +  GM+V   + ++
Sbjct: 356 TLSVGQPLECNILTISESPKIVSVSVSHFLVSRATTKDSTAITAQSIKAGMLVEGTISAV 415

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
            +NG+ + FL +F G +  FH+    P T    D+ + + + ARI+ VD   + + L+L 
Sbjct: 416 YDNGLQVRFLEFFAGDIHQFHVDR--PLT----DFQEGRTLKARIISVDHEKKRIHLSLL 469

Query: 393 PYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
            + L  R  P + +K+GDI+ +  +V+      +LL +P    S    +  +   E    
Sbjct: 470 SHCLGLRPFPFNTLKIGDIFHKDIIVKKVDTHEILLSLPD-EFSKVKGLLHNTQTENNKE 528

Query: 452 KLEKKYKEGSCVRV--RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
            L+ K+  GS + V  R+    +L+ + T   K       ++++ D++PG ++ G +  V
Sbjct: 529 SLKGKFNVGSELHVPCRVKHVDYLDAMVTLTTKKKEIGKTIYSYYDLQPGQILDGTIKFV 588

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
                 ++    +  + P+ ++ E  I+KP ++F  G  L FR+L V  + KR+ +T K 
Sbjct: 589 RDDSIEIKITDNIFGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKP 648

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           +LV S L ILSS A      I  G+I++IE     V F+  V G   RS++   P    S
Sbjct: 649 SLVHSTLPILSSKAACKVGEIAQGFISRIEDERIHVTFFGDVHGIVDRSQMSRTPITMIS 708

Query: 628 SMYHVGQVVKCRIMSSIP 645
             + +GQVV  + +   P
Sbjct: 709 EHFQIGQVVTTKTLQVNP 726



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
            LD M +     L+T     GK +    DL P  I+ G +K V      I ++  +   V 
Sbjct: 552  LDAMVT-----LTTKKKEIGKTIYSYYDLQPGQILDGTIKFVRDDSIEIKITDNIFGVVP 606

Query: 1408 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1467
            + NL +  +  P + F  G+ +  R+L V P  KR+ +TLK S    ++   +++ +   
Sbjct: 607  MHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVH-STLPILSSKAACK 665

Query: 1468 VGDIVIGQIKRVESYGLFITI 1488
            VG+I  G I R+E   + +T 
Sbjct: 666  VGEIAQGFISRIEDERIHVTF 686



 Score = 43.9 bits (102), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 153/368 (41%), Gaps = 43/368 (11%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +A+  +    T   +K GM+V+G + AV   G  V+F            + +F + +P  
Sbjct: 388 RATTKDSTAITAQSIKAGMLVEGTISAVYDNGLQVRFLEFFAG-----DIHQFHVDRPLT 442

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL--ITHGWIT--K 595
            F+ G  L  R++ V  + KRI ++     + S    L  +   T ++  I H  I   K
Sbjct: 443 DFQEGRTLKARIISVDHEKKRIHLS-----LLSHCLGLRPFPFNTLKIGDIFHKDIIVKK 497

Query: 596 IEKHGCFVRF---YNGVQGFAPRSELGLDPGCEPSSMYHVGQV--VKCRIMSSIPASRRI 650
           ++ H   +     ++ V+G    ++   +        ++VG    V CR+         +
Sbjct: 498 VDTHEILLSLPDEFSKVKGLLHNTQTENNKESLKGK-FNVGSELHVPCRVKHVDYLDAMV 556

Query: 651 NLSFMMKP---TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            L+   K    T  S  DL + G ++ G +  V  +++ + +    +  G +P  +L + 
Sbjct: 557 TLTTKKKEIGKTIYSYYDL-QPGQILDGTIKFVRDDSIEIKITDNIF--GVVPMHNLGET 613

Query: 708 LEHATVMKSVIKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           +        ++KP   F+       ++L +  E   L+L+ K SL++S   + S  +   
Sbjct: 614 M--------ILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVHSTLPILSSKAACK 665

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
              +  G++  I +    V F G + G   RS+        +S+ + +GQ V +  L VN
Sbjct: 666 VGEIAQGFISRIEDERIHVTFFGDVHGIVDRSQMSRTPITMISEHFQIGQVVTTKTLQVN 725

Query: 821 SETGRITL 828
            +   +TL
Sbjct: 726 PKGLFLTL 733



 Score = 43.9 bits (102), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 154/389 (39%), Gaps = 49/389 (12%)

Query: 322 GMMVSTRVQSILENGVMLSFLTYF--TGTVDIFHLQNTFPTTNWKNDYNQH--------K 371
           GM +   VQS+ + G ++SF + F   G +     +  +PTT    D +          +
Sbjct: 302 GMNIYGSVQSVQDKGYIISFGSGFEHKGFLKFEDTKFYWPTTTSNVDASTATETTLSVGQ 361

Query: 372 KVNARILFVDPTSRAVGLTLNPYLLHNRAP--------PSHVKVGDIYDQSKVVRVDRGL 423
            +   IL +  + + V ++++ +L+ +RA            +K G + + +     D GL
Sbjct: 362 PLECNILTISESPKIVSVSVSHFLV-SRATTKDSTAITAQSIKAGMLVEGTISAVYDNGL 420

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
            +                  D+ +  V +    ++EG  ++ RI+   H +      L +
Sbjct: 421 QVRF----------LEFFAGDIHQFHVDRPLTDFQEGRTLKARIISVDHEKKRIHLSLLS 470

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIA--VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
                  F  + +K G +    +I   VD+   ++  P     +  L H ++ E  K   
Sbjct: 471 HCLGLRPFPFNTLKIGDIFHKDIIVKKVDTHEILLSLPDEFSKVKGLLHNTQTENNKESL 530

Query: 541 -KKFKVGAELVF--RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
             KF VG+EL    RV  V      +T+T KK   K     + SY +     I  G I  
Sbjct: 531 KGKFNVGSELHVPCRVKHVDYLDAMVTLTTKK---KEIGKTIYSYYDLQPGQILDGTIKF 587

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           +      ++  + + G  P   LG     +P   ++ GQ ++ RI+  +P  +R+ L+  
Sbjct: 588 VRDDSIEIKITDNIFGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLT-- 645

Query: 656 MKPTRV-------SEDDLVKLGSLVSGVV 677
           +KP+ V       S     K+G +  G +
Sbjct: 646 LKPSLVHSTLPILSSKAACKVGEIAQGFI 674


>gi|281206551|gb|EFA80737.1| hypothetical protein PPL_06323 [Polysphondylium pallidum PN500]
          Length = 926

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 155/616 (25%), Positives = 282/616 (45%), Gaps = 68/616 (11%)

Query: 71  HAEVDAEFEA---VERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKIT 127
           +A+ D++ EA    ++G    +    KK E+ A + +  L + F         + AN++ 
Sbjct: 110 NAQQDSDEEADIKTKKGKKMPSDYLSKKQEQDAQKLLPFLRANFS--------KDANRLL 161

Query: 128 LKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT-- 185
            KN   G+ + G +  ++  DL   LP G +G  +  +  D     +        +P+  
Sbjct: 162 FKNFYTGLVVMGCLESISNMDLTFSLPFGAKGYVKFNEISDEFTKYQESVMRSKDIPSNF 221

Query: 186 ------------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 233
                       +F +GQ++   ++ L D+ K  G   +  +LR  ++  G +  T +EG
Sbjct: 222 VKLDTIMNRIKGMFMIGQIMKVAIVGLTDNAKSFG---LHCTLRTDVVNVGSTTSTFKEG 278

Query: 234 MVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNL-----AENSGID-------VKPGLLL 280
           M +   VKS+ED GYI+ FG      GF+  +N       + +G         +  G  L
Sbjct: 279 MTIFGEVKSVEDRGYIVSFGKDVEAKGFIEHSNTRYFWPVQGAGTQWNENECRLAQGQPL 338

Query: 281 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
           + V+  ID       L++    +++    D   +++D +  GMMV T++  I  NG+ ++
Sbjct: 339 EAVITEIDSATNTFKLNASHPLINRSTVTDSAVVTMDSIKAGMMVDTKIAKIYRNGISVT 398

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA 400
           FL YF G +   HL+         ++Y+    + ARIL+VD   + +GL+   ++L  R 
Sbjct: 399 FLDYFAGDIFFTHLEKPL------SEYSVSMNLKARILYVDQIDKKIGLSALSHVLGLRP 452

Query: 401 PP-SHVKVGDIYDQS--KVVRVDRGLGLLLDIPSTPVSTP--AYVTISDVAEEEVRKLEK 455
            P   +K G I+  S  ++ RVD  L + + I S+  S P   Y+    + + +V  L+ 
Sbjct: 453 YPFGQIKPGAIFKSSEIQITRVD-PLEMYVSINSSQNSQPLKGYIHHKKIPDVKVDNLKS 511

Query: 456 KYK-----EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG--KVIA 508
            Y      +  C   RI+   H++ + T  L  S     V+ + ++ PGM++    K+I 
Sbjct: 512 IYHPNGKFDKDC---RIIHVDHVDAMVTLTLSKSDLSKEVYNYYNLFPGMIINAVIKIIR 568

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
            DS    V+    +  + P  ++++  +  P KKFKVG  +  RVL    + KR+ +T K
Sbjct: 569 PDSIE--VEVSPSIYGVVPKHNIADTILSDPSKKFKVGQAVRCRVLSCVPQYKRLMLTMK 626

Query: 567 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFAPRSELGLDPGCE 625
            +L+ S L I ++ A      I+HG+I+ I+ +   FV F++   G   +  L   P   
Sbjct: 627 NSLINSTLPIFTNSANVNVGDISHGYISNIKDNSHIFVTFFDKCFGIVQKKHLSNLPVTM 686

Query: 626 PSSMYHVGQVVKCRIM 641
               + +GQVV  +++
Sbjct: 687 IEDHFKIGQVVAAQVI 702



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 120/558 (21%), Positives = 216/558 (38%), Gaps = 104/558 (18%)

Query: 1018 GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 1077
            G+ + +  ++      A +LL  L+A     +  + R   K+ Y  G +V   +  I  +
Sbjct: 126  GKKMPSDYLSKKQEQDAQKLLPFLRA---NFSKDANRLLFKNFY-TGLVVMGCLESISNM 181

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLF------SNFKIGQTVTARI---------- 1121
            +L      G  G +   E++D+ +   E++       SNF    T+  RI          
Sbjct: 182  DLTFSLPFGAKGYVKFNEISDEFTKYQESVMRSKDIPSNFVKLDTIMNRIKGMFMIGQIM 241

Query: 1122 -IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
             +A     D  KSF    +++  ++ V    S   F+E     G  + G V  V++   +
Sbjct: 242  KVAIVGLTDNAKSFGLHCTLRTDVVNVGSTTS--TFKE-----GMTIFGEVKSVEDRGYI 294

Query: 1181 LTISRHLKAQLFILDSA---YEP-----SELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            ++  + ++A+ FI  S    + P     ++  E + R   G+ +   +  I+      +L
Sbjct: 295  VSFGKDVEAKGFIEHSNTRYFWPVQGAGTQWNENECRLAQGQPLEAVITEIDSATNTFKL 354

Query: 1233 -VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
                P    I+  TV  S       I  G +V  +I+KI     G+ V    +  G + F
Sbjct: 355  NASHPL---INRSTVTDSAVVTMDSIKAGMMVDTKIAKIYRN--GISVTFLDYFAGDIFF 409

Query: 1292 TEL------------------------KNICVSD-----PLSGYDEGQFDPLSGY--DEG 1320
            T L                        K I +S       L  Y  GQ  P + +   E 
Sbjct: 410  THLEKPLSEYSVSMNLKARILYVDQIDKKIGLSALSHVLGLRPYPFGQIKPGAIFKSSEI 469

Query: 1321 QFVKCKVLEI---------SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1371
            Q  +   LE+         S+ ++G  H +      +D + S    +   D D    H++
Sbjct: 470  QITRVDPLEMYVSINSSQNSQPLKGYIHHKKIPDVKVDNLKSIYHPNGKFDKDCRIIHVD 529

Query: 1372 KIE----------DLS----------PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
             ++          DLS          P MI+   +K +      + +S  +   V   N+
Sbjct: 530  HVDAMVTLTLSKSDLSKEVYNYYNLFPGMIINAVIKIIRPDSIEVEVSPSIYGVVPKHNI 589

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1471
            +D  +  P K+F +G+ V  RVLS  P  KR+ +T+K S    ++     N +N++VGDI
Sbjct: 590  ADTILSDPSKKFKVGQAVRCRVLSCVPQYKRLMLTMKNS-LINSTLPIFTNSANVNVGDI 648

Query: 1472 VIGQIKRV-ESYGLFITI 1488
              G I  + ++  +F+T 
Sbjct: 649  SHGYISNIKDNSHIFVTF 666



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 729
           G +++ V+ ++ P+++ V V    Y  G +P  ++AD +      K  +       ++L 
Sbjct: 557 GMIINAVIKIIRPDSIEVEVSPSIY--GVVPKHNIADTILSDPSKKFKVGQAVRC-RVLS 613

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTGF 788
              +   L+L+ K SLINS   + +++++++   + HGY+ NI +    FV F  +  G 
Sbjct: 614 CVPQYKRLMLTMKNSLINSTLPIFTNSANVNVGDISHGYISNIKDNSHIFVTFFDKCFGI 673

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
             +    +     +   + +GQ V + ++  N
Sbjct: 674 VQKKHLSNLPVTMIEDHFKIGQVVAAQVIGRN 705


>gi|325088403|gb|EGC41713.1| ribosomal RNA processing protein RRP5 [Ajellomyces capsulatus H88]
          Length = 1817

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 203/842 (24%), Positives = 357/842 (42%), Gaps = 62/842 (7%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKN---KKKKKKTERKANETVDDLG 108
           P FPRGG + L+  E+ +IH +   +    ++G   ++    +   + +R + E      
Sbjct: 68  PAFPRGGANILSPLEQKQIHIQATRDVLFEQKGAQAQDDIDNEDGTQKKRSSKEFGIKST 127

Query: 109 SLFGDGISGKLPRYANK-------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-- 159
                     +P+ + K       +  K I  G K+ G V+ +N  D+ + LP  L G  
Sbjct: 128 KGKTKSKKHTIPQASTKEEVRIEGLNFKRIVVGSKILGQVSSINAHDIGLSLPNNLTGYI 187

Query: 160 -LARAADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDDD- 203
            L   +  L   ++  + ++++                L + F +GQ +   V   + + 
Sbjct: 188 PLTAVSKTLQQKIEKLLNSSQEEDDNSDGDDGGDGDLDLKSYFKLGQYLRAAVTSTETEV 247

Query: 204 --KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTG 259
              K  GK+ I LS+       GLS   +     + A V S+EDHG ++  GL      G
Sbjct: 248 NHGKVKGKKHIELSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMDLGLEDGQTRG 307

Query: 260 FLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISI 316
           F+    +  +   + +K G +   VV   +    VV LS++  T              +I
Sbjct: 308 FMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGSVVKLSANLPTAGSIKKSHFLASAPTI 367

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
           +  +PG      +  +   G+    +      VDI     T    +    Y+   K+  R
Sbjct: 368 NSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGATAGKEDITARYHVGAKIKGR 427

Query: 377 ILFVDPTSRAVGL---------TLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLL 426
           ++   PT+  + L            P +L +++    V  +  I  + KV +V+ GLG+ 
Sbjct: 428 LICTFPTAEPLKLGFSILDHVVKFTPTVLDHKSSCEGVPAISAIVPEVKVTKVEPGLGVY 487

Query: 427 LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
           +              +SD   + +   +  Y   S    RI+GF  L+ L    L+    
Sbjct: 488 VQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVGFSALDNLYLLSLERKVI 547

Query: 487 EGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +       DV  G VVKGK+    I  D   G IV    G+  L P  HMS+ ++  P K
Sbjct: 548 DQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEK 607

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G ++  R+L V  + +++ +T KKTL+ S+ +    Y++      + G I  I+ H
Sbjct: 608 KFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYSDILPGNQSPGTIISIQSH 667

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMK 657
           G  V+FY  V+GF P SE+      +P+  +++GQVV    ++     R++ +S    + 
Sbjct: 668 GAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDAELRKLVVSCKDQLS 727

Query: 658 PTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 714
            T   +  L  +  G+ VSG V   +   +++ +   G     +  EH++D         
Sbjct: 728 STEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLV-ARLNAEHVSDGQASRNGAA 786

Query: 715 KSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVC 770
            + I+ G + ++LL+L+ + S+ L+  + K SL  + Q  +LP+    +   S V G+V 
Sbjct: 787 LARIRVGQKLNELLILNMQKSHRLIKVTNKPSLKQARQRGELPAKFEDLEEGSKVTGFVK 846

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           NII  G FV FLG LTGF P+    D      S  Y + Q +   +  +  +  R  L+L
Sbjct: 847 NIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSFGYALAQPISLTVQSIEDDRQRFILTL 906

Query: 831 KQ 832
           K+
Sbjct: 907 KE 908



 Score =  150 bits (379), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 222/954 (23%), Positives = 413/954 (43%), Gaps = 138/954 (14%)

Query: 593  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 648
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI   +  S 
Sbjct: 477  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARI---VGFSA 533

Query: 649  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 699
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 534  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 592

Query: 700  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 593  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 649

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 650  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 709

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            +V++E  ++ +S K    S+       EH              H G+             
Sbjct: 710  NVDAELRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 744

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 927
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 745  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 804

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 986
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 805  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 854

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 855  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 911

Query: 1047 TETSSSKRAKK----------------KSSYDV--GSLVQAEITEIKPLELRLKFGIGFH 1088
             +   S R K+                KS  D+  G + +A++  IK  ++ ++      
Sbjct: 912  GKQRVSDRDKESDNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 971

Query: 1089 GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1137
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 972  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1031

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1032 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1088

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1089 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1139

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
             +G+I+ GR++++      ++VQ+   + G ++  ++                 D  S  
Sbjct: 1140 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDMA----------------DDYSKI 1181

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
            +   F K ++L +         +++  +  L  M S+     S  +  P   +  I  + 
Sbjct: 1182 NPADFHKNELLRVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIK 1234

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
             N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +
Sbjct: 1235 VNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILAD 1294

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            P S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I+ T
Sbjct: 1295 PESNKLQMSLKQSVLDPNYKTPI-TIKDLKRGQTVTGKVRNVEEFGAFIVIDGT 1347



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1134 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNELL 1192

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 423
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1193 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1251

Query: 424  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1252 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1306

Query: 484  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 538
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1307 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1366

Query: 539  PGKKFKVG 546
              K F+ G
Sbjct: 1367 ARKLFEKG 1374


>gi|190348684|gb|EDK41184.2| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1674

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 207/836 (24%), Positives = 366/836 (43%), Gaps = 85/836 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFE---AVERGLHKKNKKKKKKT-----ERKANET 103
           FPRGG   LT  E  EI  E   D  FE   A +R   +K+++ +KK+       K +E 
Sbjct: 17  FPRGGASVLTPLEVKEISNEAARDVLFESSTAAKRTSGEKSQQARKKSKKSKKNTKESEE 76

Query: 104 VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
           V+++ ++               ++ K +  G  + G +++VN+ DL I +   L G    
Sbjct: 77  VENVITI-------------ESLSFKKLFPGTTVLGQISKVNKLDLEIAIGDNLIGYVPI 123

Query: 164 ADALDPILD--------------------NEIEANEDNLLP---TIFHVGQLVSCIVLQL 200
           +   D I                            +DN LP   +IF  G+ +   V + 
Sbjct: 124 SSISDEITRKVELYQQESDSSEDEEEEGVTRTATMKDNELPDLQSIFKAGEWLRAKVTEA 183

Query: 201 DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
           +  + +  K++I  ++    + + +  E +  G +L   V S+ED G IL+ G+   +GF
Sbjct: 184 ELSQSK--KKRIQFTIEPENVNESIEDEDLIPGNLLQCSVVSVEDRGVILNTGVSGKSGF 241

Query: 261 LPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
           +    L+ N+ ID++    G ++   + +   TR  + L     +VS    K     S+D
Sbjct: 242 ISNKELS-NANIDLQSLSEGYVMMTSIAAKPTTR-TISLRPATSSVSSKKNKVSNISSVD 299

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            + PG++V   V  I + G+         GT+ + ++   +   +  + +     + AR+
Sbjct: 300 AIQPGIIVDALVAEITKEGITTKVFGMVDGTISLSNI-GEYDLDSLNHKFTIGNSIKARV 358

Query: 378 LFV--DPTSRAVGLTLNPYLL-----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430
           + V     ++ + L++ P +L      N        +G ++DQ +V+ +D      + + 
Sbjct: 359 IAVLLKGGTKKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNY---IFVS 415

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
           +   S    V IS + +E   K+   Y  GS  + R++G    EGL T  +     +   
Sbjct: 416 TGTSSYHGQVHISKINQE---KVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKF 472

Query: 491 FTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
              S +  G  + G ++I V  D  G  V+      A  P  HMS+  +V P +K+KVG+
Sbjct: 473 MVPSQIPVGEYINGGEIIKVLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVGS 532

Query: 548 ELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           ++  RVL V   +I +T KKTLV      +LS++  A   L T   + K   +G  V F+
Sbjct: 533 KIKGRVLKVHGSKIFITLKKTLVNIEDDEVLSNFESAEIGLKTPATVEKFVHNGAIVSFF 592

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
             ++ F P++E+      +       GQ V  RIM      +R  L   +K   V++   
Sbjct: 593 GNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQR--LIVTLKQNDVTKAQQ 650

Query: 667 VKLGSLVSG-------VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
             + S+V G       +V+       V+  I     +G I    L+D + E    +   I
Sbjct: 651 SAVSSVVPGKTIVEASIVEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGNYEQTRALYKKI 710

Query: 719 KPGYEFDQ-LLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIH-PNSVVHGYVCNIIE 774
           + G + +  +L  D ++ +++LSAK S IN A+  Q+PS  S +   + V+ GY+ ++  
Sbjct: 711 QAGDKLEAVVLERDMKTRSVILSAKQSFINGAKNNQIPSQFSDVTVSDKVLTGYIKSVTN 770

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            G FV F G+LTG      A      D+ K +Y  QSV   ++ +++E  R  LSL
Sbjct: 771 LGLFVAFGGKLTGLVLAKYATKNPNEDILKRFYKNQSVSCRVIRLDNENKRFLLSL 826



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 228/1039 (21%), Positives = 426/1039 (41%), Gaps = 144/1039 (13%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PG++V   V  +   G   +  G V     L ++ E+++     KF +G  +  RV+ 
Sbjct: 301  IQPGIIVDALVAEITKEGITTKVFGMVDGTISLSNIGEYDLDSLNHKFTIGNSIKARVIA 360

Query: 556  VKSKRITVTHKKTLVKSKLA-ILS-SYAEATDRLITH--GWI-TKIEKHGC---FVRFYN 607
            V  K  T    K LV S L  ILS    E TD L     G++  ++E  G    ++    
Sbjct: 361  VLLKGGT----KKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNYIFVST 416

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS--------SIPASRRINLSFMMKPT 659
            G   +  +  +      +    Y VG   K R++         ++    +I  +  M P+
Sbjct: 417  GTSSYHGQVHISKINQEKVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKFMVPS 476

Query: 660  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 715
            ++   + +  G ++      V P+   + V         +P EH++D    + E    + 
Sbjct: 477  QIPVGEYINGGEIIK-----VLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVG 531

Query: 716  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIE 774
            S IK         VL    S + ++ K +L+N    ++ S+             V   + 
Sbjct: 532  SKIKGR-------VLKVHGSKIFITLKKTLVNIEDDEVLSNFESAEIGLKTPATVEKFVH 584

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G  V F G L  F P+++  +    D       GQ+V   I+D +    R+ ++LKQ+ 
Sbjct: 585  NGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQRLIVTLKQND 644

Query: 835  CS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHESNDFG 889
             +    S  +S +    ++E  I  ++ SK   S +  +EG  + G +  G++ + N   
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASI--VEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGN--- 699

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
                +E+   +Y            +++G  ++A +L+     R V LS K  FI+     
Sbjct: 700  ----YEQTRALY----------KKIQAGDKLEAVVLERDMKTRSVILSAKQSFIN----- 740

Query: 950  NSNRQAQKKKRKREASKDLGVHQTV-NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
                   K  +      D+ V   V    ++ V    L ++       +  A  +  N  
Sbjct: 741  -----GAKNNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPN 795

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE--------TSSSKRAKKKSS 1060
            +   K+F   QSV   V+ L + +   R LL L +  ++E          S+K  K  + 
Sbjct: 796  EDILKRFYKNQSVSCRVIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTK--KLITD 851

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 1118
            Y  G+  QA+I  IK  +L ++      GR+ IT+  +  S++ +     S F   + ++
Sbjct: 852  YTPGAKTQAKIKSIKGTQLNVQLADNLQGRLDITQCFEKWSDIKDKNQPLSQFHKDEILS 911

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG---SKLLFEECDVSIGQRVTGYVYKVD 1175
             R++      D K      +S + S  T+ E+       + E  DV +G     +V  + 
Sbjct: 912  VRVLGYH---DAKNHTFLPISHRKSKNTILELTLLEKDPITEIKDVKVGSEHVAFVNNLA 968

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
              +  +++S  +K ++  +D + E S  ++ + R  IG A+   V  I++E K + L  R
Sbjct: 969  RGFVWVSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILTSR 1028

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                     TV    D     +        R+ K+L     ++V++   +    + T   
Sbjct: 1029 KH-------TVTKFED-----VELNKQYPARVLKVLPSF--VLVELAHDVVASSYIT--- 1071

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
                 D L+ Y     +     D   +    VL + +  +    + +SLR        TN
Sbjct: 1072 -----DALNDYSSALNEVFHAND---YTTATVLAVDKDSK---KISVSLR--------TN 1112

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
             +     VD   K +  +EDL    +V+G+VKNV + G ++ L R +   V +S+LSD Y
Sbjct: 1113 KA-----VD---KVINSVEDLQRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSY 1164

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIV 1472
            ++  +K F   + V G+V++ +    RV +TLK S+       E+N L    +L  G++ 
Sbjct: 1165 LKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESE----VNGELNVLKKFEDLKEGEVY 1219

Query: 1473 IGQIKRVESYGLFITIENT 1491
             G +++V  +G+F+ ++ T
Sbjct: 1220 EGSVRQVTDFGVFVKLDGT 1238



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 184/833 (22%), Positives = 345/833 (41%), Gaps = 103/833 (12%)

Query: 638  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
             R +S  PA+  ++ S   K + +S  D ++ G +V  +V  +T   +   V   G   G
Sbjct: 273  TRTISLRPATSSVS-SKKNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVF--GMVDG 329

Query: 698  TIPT----EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 753
            TI      E+  D L H   + + IK        ++L   +  L+LS    +++   Q  
Sbjct: 330  TISLSNIGEYDLDSLNHKFTIGNSIKARV---IAVLLKGGTKKLVLSILPRILSLDSQEN 386

Query: 754  SDASHIHPNSVVHGYVCNIIET-GCFVRFLGRLTGFAPRSKAVDGQRADLSKT---YYVG 809
            +DA    P     G+V + +E  G    ++   TG +     V   + +  K    Y+VG
Sbjct: 387  TDALEAFP----IGFVFDQVEVIGLDSNYIFVSTGTSSYHGQVHISKINQEKVIDDYFVG 442

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
               ++ ++ +N   G +TL++        D   +   F++  +I +      NG E+  +
Sbjct: 443  SKHKARVIGLNKFEGLLTLTM--------DPKIIDTKFMVPSQIPV--GEYINGGEI--I 490

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
            +    G+ I+ K+   NDF   V  E  SDV       +      + GS I+  +L V  
Sbjct: 491  KVLPDGAGIQVKIF--NDFDAFVPPEHMSDVRLVYPERKY-----KVGSKIKGRVLKVHG 543

Query: 930  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 989
            ++  + L    V I+   E  SN ++ +   K  A+ +  VH    AIV       L   
Sbjct: 544  SKIFITLKKTLVNIED-DEVLSNFESAEIGLKTPATVEKFVHN--GAIVSFF--GNLRAF 598

Query: 990  LPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETE 1048
            LP+  + I    V D        K FL  GQ+V   +M      T  RL++ LK   + +
Sbjct: 599  LPK--NEISETFVKD-------AKDFLKKGQTVNVRIM--DRDETQQRLIVTLK---QND 644

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITE--------IKPLELRLKFGIGFHGRIHITEVNDDK 1100
             + ++++   S     ++V+A I E        I  +E     G    G I+  +++D  
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIE-----GSNLRGVIYAGQLSDGN 699

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
                  L+   + G  + A ++ +    DMK   +  LS K S +  ++  +++  +  D
Sbjct: 700  YEQTRALYKKIQAGDKLEAVVLER----DMKTRSVI-LSAKQSFINGAK-NNQIPSQFSD 753

Query: 1161 VSIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            V++  +V TGY+  V N    +     L   +    +   P+E  +  +RF+  ++V+  
Sbjct: 754  VTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNE--DILKRFYKNQSVSCR 811

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG- 1276
            V+ ++ E K  R +L    +  S+   ++ N  D+ +  I +    G +    +  + G 
Sbjct: 812  VIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTKKLITDY-TPGAKTQAKIKSIKGT 868

Query: 1277 -LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
             L VQ+  +L GR+  T+    C        D+ Q  PLS + + + +  +VL       
Sbjct: 869  QLNVQLADNLQGRLDITQ----CFEKWSDIKDKNQ--PLSQFHKDEILSVRVLGYHDAKN 922

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
             TF + +S R S + +      +L+     P   + +I+D+        +V N+     +
Sbjct: 923  HTF-LPISHRKSKNTIL-----ELTLLEKDP---ITEIKDVKVGSEHVAFVNNLARGFVW 973

Query: 1396 IMLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
            + +S  +  +V   +LSD     E  E   PIG  +  +V  ++   K + +T
Sbjct: 974  VSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILT 1026



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 163/373 (43%), Gaps = 64/373 (17%)

Query: 1083 FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFLWELSI 1140
              +   GR+   +++D+ S + E+L +   IG  + A++  I + +K             
Sbjct: 976  MSLSVKGRVSFMDLSDEVS-IFEDLENRLPIGAAIKAKVKQIDEEHK------------- 1021

Query: 1141 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE- 1199
              +++  S   +   FE  DV + ++    V KV   + L+ ++  + A  +I D+  + 
Sbjct: 1022 --NIILTSRKHTVTKFE--DVELNKQYPARVLKVLPSFVLVELAHDVVASSYITDALNDY 1077

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1259
             S L E    FH     T  VL+++K+ K + + LR      ++K VD   ++++  +  
Sbjct: 1078 SSALNEV---FHANDYTTATVLAVDKDSKKISVSLR------TNKAVDKVINSVED-LQR 1127

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G +  + +   G+ V +G  ++G V  ++L +  + D    + + Q  P+ G   
Sbjct: 1128 GDVVKGFVKNVANN--GVYVSLGRSVHGLVRVSDLSDSYLKDWKKYFKQHQ--PVVG--- 1180

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
             + V CK  E  R +       ++L+ S              +V+     L+K EDL   
Sbjct: 1181 -KVVNCK--EEGRVL-------ITLKES--------------EVNGELNVLKKFEDLKEG 1216

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
             + +G V+ VT  G F+ L   L+   L   S ++D      +  F  G  V  ++L + 
Sbjct: 1217 EVYEGSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGIN 1276

Query: 1438 PLSKRVEVTLKTS 1450
               K++ + +K S
Sbjct: 1277 SEKKQLSLGMKVS 1289



 Score = 44.3 bits (103), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 101/260 (38%), Gaps = 50/260 (19%)

Query: 699  IPTEHLADHL-EHATVMKSVIKPG-YEFDQLLVLDNESSNLLLSAKYS-----LINSAQQ 751
            + + ++ D L ++++ +  V     Y    +L +D +S  + +S + +     +INS + 
Sbjct: 1065 VASSYITDALNDYSSALNEVFHANDYTTATVLAVDKDSKKISVSLRTNKAVDKVINSVED 1124

Query: 752  LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811
            L           VV G+V N+   G +V     + G    S   D    D  K +   Q 
Sbjct: 1125 L-------QRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSYLKDWKKYFKQHQP 1177

Query: 812  VRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWV 869
            V   +++   E GR+ ++LK+S                            NG  + LK  
Sbjct: 1178 VVGKVVNCKEE-GRVLITLKESEV--------------------------NGELNVLKKF 1210

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-------ATVESGSVIQA 922
            E    G V EG V +  DFGV V  +   +V G   H ++A        A    G  ++ 
Sbjct: 1211 EDLKEGEVYEGSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKV 1270

Query: 923  AILDVAKAERLVDLSLKTVF 942
             IL +   ++ + L +K  +
Sbjct: 1271 KILGINSEKKQLSLGMKVSY 1290



 Score = 43.5 bits (101), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 126/299 (42%), Gaps = 40/299 (13%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---ISIDLLVPGMMVSTRVQSIL 333
            G  ++  V+ ID   K + L+S   TV+K    +L       +  ++P  ++      ++
Sbjct: 1006 GAAIKAKVKQIDEEHKNIILTSRKHTVTKFEDVELNKQYPARVLKVLPSFVLVELAHDVV 1065

Query: 334  ENGVMLSFLTYFTGTV-DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
             +  +   L  ++  + ++FH           NDY       A +L VD  S+ + ++L 
Sbjct: 1066 ASSYITDALNDYSSALNEVFH----------ANDY-----TTATVLAVDKDSKKISVSLR 1110

Query: 393  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVA 446
                 N+A    +   +   +  VV+     G + ++ +  V      S    V +SD++
Sbjct: 1111 T----NKAVDKVINSVEDLQRGDVVK-----GFVKNVANNGVYVSLGRSVHGLVRVSDLS 1161

Query: 447  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVK 503
            +  ++  +K +K+   V  +++  +  EG     LK S   G   ++    D+K G V +
Sbjct: 1162 DSYLKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEVNGELNVLKKFEDLKEGEVYE 1220

Query: 504  GKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            G V  V  FG  V+  G   V  LC    +++ + V     F  G  +  ++LG+ S++
Sbjct: 1221 GSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279


>gi|190408455|gb|EDV11720.1| rRNA biogenesis protein RRP5 [Saccharomyces cerevisiae RM11-1a]
          Length = 1729

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 308/1346 (22%), Positives = 576/1346 (42%), Gaps = 185/1346 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALDP----ILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G F+ F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFIAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  V   +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----VSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++ +      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKN 1296
               G+ V++    ++ G  H TE+ +
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 220/858 (25%), Positives = 364/858 (42%), Gaps = 156/858 (18%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE-----IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +          ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFIAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   N+ T I   D + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NVST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1305 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKINN-----VIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1473
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1474 GQIKRVESYGLFITIENT 1491
            G IK V  +G+F+ ++NT
Sbjct: 1270 GTIKNVTDFGVFVKLDNT 1287



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 152/367 (41%), Gaps = 57/367 (15%)

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
               RI + ++ D+ SN  EN+ S F +G  +  ++ +     D +  F+  +      + 
Sbjct: 1026 LKARISLLDLADNDSNFSENIESVFPLGSALQVKVAS----IDREHGFVNAIGKSHVDIN 1081

Query: 1147 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
            VS I            +   + G V K+  ++ LL +   +    FI D+  + S   + 
Sbjct: 1082 VSTI-----------KVDDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKE 1130

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFIHEGDIVGG 1265
                 I   +   VLS++++ K + L LR      + KT  I S+++++    +G+IV G
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNKKIELSLR----SATAKTRSIKSHEDLK----QGEIVDG 1182

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
             +  +     G+ V +   +   V  ++L +  + +    Y   Q      Y  G+ V C
Sbjct: 1183 IVKNV--NDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQ------YVLGKVVTC 1234

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
               E SR       + L+LR S              +++   K L+   D+    + +G 
Sbjct: 1235 D--EDSR-------ISLTLRES--------------EINGDLKVLKTYSDIKAGDVFEGT 1271

Query: 1386 VKNVTSKGCFIMLSRKLDAKVL--LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            +KNVT  G F+ L   ++   L  ++ ++D   E     F +G  V   VL   P  K++
Sbjct: 1272 IKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQI 1331

Query: 1444 EVTLKTS 1450
             ++LK S
Sbjct: 1332 SLSLKAS 1338



 Score = 48.5 bits (114), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 39/331 (11%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 278
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
             LQ  V SIDR    V      + + K  V  ++  I +D  +PG     RV  I E  V
Sbjct: 1055 ALQVKVASIDREHGFV------NAIGKSHVDINVSTIKVDDELPG-----RVLKIAEKYV 1103

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNP 393
            +L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L  
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRS 1160

Query: 394  YLLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
                 R+  SH  +K G+I D       D+G+ + L          A+V +S +++  ++
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLK 1215

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 508
            + +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  
Sbjct: 1216 EWKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKN 1274

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
            V  FG  V+    V  +  L H++E    KP
Sbjct: 1275 VTDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|146412582|ref|XP_001482262.1| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1674

 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 208/838 (24%), Positives = 370/838 (44%), Gaps = 89/838 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFE---AVERGLHKKNKKKKKKT-----ERKANET 103
           FPRGG   LT  E  EI  E   D  FE   A +R   +K+++ +KK+       K +E 
Sbjct: 17  FPRGGASVLTPLEVKEISNEAARDVLFESSTAAKRTSGEKSQQARKKSKKSKKNTKESEE 76

Query: 104 VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
           V+++ ++               ++ K +  G  + G +++VN+ DL I +   L G    
Sbjct: 77  VENVITI-------------ESLSFKKLFPGTTVLGQISKVNKLDLEIAIGDNLIGYVPI 123

Query: 164 ADALDPILD--------------------NEIEANEDNLLP---TIFHVGQLVSCIVLQL 200
           +   D I                            +DN LP   +IF  G+ +   V + 
Sbjct: 124 SSISDEITRKVELYQQESDSSEDEEEEGVTRTATMKDNELPDLQSIFKAGEWLRAKVTEA 183

Query: 201 DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
           +  + +  K++I  ++    + + +  E +  G +L   V S+ED G IL+ G+   +GF
Sbjct: 184 ELSQSK--KKRIQFTIEPENVNESIEDEDLIPGNLLQCSVVSVEDRGVILNTGVSGKSGF 241

Query: 261 LPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD-LKGIS- 315
           +    L+ N+ ID++    G ++   + +   TR +   S  P T+S  + K+ +  IS 
Sbjct: 242 ISNKELS-NANIDLQSLSEGYVMMTSIAAKPTTRTI---SLRPATLSVSLKKNKVSNISS 297

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
           +D + PG++V   V  I + G+         GT+ + ++   +   +  + +     + A
Sbjct: 298 VDAIQPGIIVDALVAEITKEGITTKVFGMVDGTISLLNI-GEYDLDSLNHKFTIGNSIKA 356

Query: 376 RILFV--DPTSRAVGLTLNPYLL-----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
           R++ V     ++ + L++ P +L      N        +G ++DQ +V+ +D      + 
Sbjct: 357 RVIAVLLKGGTKKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNY---IF 413

Query: 429 IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           + +   S    V IS + +E   K+   Y  GS  + R++G    EGL T  +     + 
Sbjct: 414 VSTGTSSYHGQVHISKINQE---KVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDT 470

Query: 489 LVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 545
                  +  G  + G ++I V  D  G  V+      A  P  HMS+  +V P +K+KV
Sbjct: 471 KFMVPLQIPVGEYINGGEIIKVLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKV 530

Query: 546 GAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
           G+++  RVL V   +I +T KKTLV      +LS++  A   L T   + K   +G  V 
Sbjct: 531 GSKIKGRVLKVHGSKIFITLKKTLVNIEDDEVLSNFELAEIGLKTPATVEKFVHNGAIVS 590

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           F+  ++ F P++E+      +       GQ V  RIM      +R  L   +K   V++ 
Sbjct: 591 FFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQR--LIVTLKQNDVTKA 648

Query: 665 DLVKLGSLVSG-------VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKS 716
               + S+V G       +V+       V+  I     +G I    L+D + E    +  
Sbjct: 649 QQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGNYEQTRALYK 708

Query: 717 VIKPGYEFDQ-LLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIH-PNSVVHGYVCNI 772
            I+ G + +  +L  D ++ +++LSAK S IN A+  Q+PS  S +   + V+ GY+ ++
Sbjct: 709 KIQAGDKLEAVVLERDMKTRSVILSAKQSFINGAKNNQIPSQFSDVTVSDKVLTGYIKSV 768

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
              G FV F G+LTG      A      D+ K +Y  QSV   ++ +++E  R  LSL
Sbjct: 769 TNLGLFVAFGGKLTGLVLAKYATKNPNEDILKRFYKNQSVSCRVIRLDNENKRFLLSL 826



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 227/1039 (21%), Positives = 424/1039 (40%), Gaps = 144/1039 (13%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PG++V   V  +   G   +  G V     L ++ E+++     KF +G  +  RV+ 
Sbjct: 301  IQPGIIVDALVAEITKEGITTKVFGMVDGTISLLNIGEYDLDSLNHKFTIGNSIKARVIA 360

Query: 556  VKSKRITVTHKKTLVKSKLA-ILS-SYAEATDRLITH--GWI-TKIEKHGC---FVRFYN 607
            V  K  T    K LV S L  ILS    E TD L     G++  ++E  G    ++    
Sbjct: 361  VLLKGGT----KKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNYIFVST 416

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS--------SIPASRRINLSFMMKPT 659
            G   +  +  +      +    Y VG   K R++         ++    +I  +  M P 
Sbjct: 417  GTSSYHGQVHISKINQEKVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKFMVPL 476

Query: 660  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 715
            ++   + +  G ++      V P+   + V         +P EH++D    + E    + 
Sbjct: 477  QIPVGEYINGGEIIK-----VLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVG 531

Query: 716  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIE 774
            S IK         VL    S + ++ K +L+N    ++ S+             V   + 
Sbjct: 532  SKIKGR-------VLKVHGSKIFITLKKTLVNIEDDEVLSNFELAEIGLKTPATVEKFVH 584

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G  V F G L  F P+++  +    D       GQ+V   I+D +    R+ ++LKQ+ 
Sbjct: 585  NGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQRLIVTLKQND 644

Query: 835  CS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHESNDFG 889
             +    S  +S +    ++E  I  ++ SK   S +  +EG  + G +  G++ + N   
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASI--VEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGN--- 699

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
                +E+   +Y            +++G  ++A +L+     R V LS K  FI+     
Sbjct: 700  ----YEQTRALY----------KKIQAGDKLEAVVLERDMKTRSVILSAKQSFIN----- 740

Query: 950  NSNRQAQKKKRKREASKDLGVHQTV-NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
                   K  +      D+ V   V    ++ V    L ++       +  A  +  N  
Sbjct: 741  -----GAKNNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPN 795

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE--------TSSSKRAKKKSS 1060
            +   K+F   QSV   V+ L + +   R LL L +  ++E          S+K  K  + 
Sbjct: 796  EDILKRFYKNQSVSCRVIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTK--KLITD 851

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 1118
            Y  G+  QA+I  IK  +L ++      GR+ IT+  +  S++ +     S F   + ++
Sbjct: 852  YTPGAKTQAKIKSIKGTQLNVQLADNLQGRLDITQCFEKWSDIKDKNQPLSQFHKDEILS 911

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG---SKLLFEECDVSIGQRVTGYVYKVD 1175
             R++      D K      +S + S  T+ E+       + E  DV +G     +V  + 
Sbjct: 912  VRVLGYH---DAKNHTFLPISHRKSKNTILELTLLEKDPITEIKDVKVGSEHVAFVNNLA 968

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
              +  +++S  +K ++  +D + E S  ++ + R  IG A+   V  I++E K + L  R
Sbjct: 969  RGFVWVSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILTSR 1028

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                     TV    D     +        R+ K+L     ++V++   +    + T   
Sbjct: 1029 KH-------TVTKFED-----VELNKQYPARVLKVLPSF--VLVELAHDVVASSYIT--- 1071

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
                 D L+ Y     +     D   +    VL + +  +    + + LR        TN
Sbjct: 1072 -----DALNDYSSALNEVFHAND---YTTATVLAVDKDSK---KISVLLR--------TN 1112

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
             +     VD   K +  +EDL    +V+G+VKNV + G ++ L R +   V +S+LSD Y
Sbjct: 1113 KA-----VD---KVINSVEDLQRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSY 1164

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIV 1472
            ++  +K F   + V G+V++ +    RV +TLK S+       E+N L    +L  G++ 
Sbjct: 1165 LKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESE----VNGELNVLKKFEDLKEGEVY 1219

Query: 1473 IGQIKRVESYGLFITIENT 1491
             G +++V  +G+F+ ++ T
Sbjct: 1220 EGSVRQVTDFGVFVKLDGT 1238



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 184/833 (22%), Positives = 344/833 (41%), Gaps = 103/833 (12%)

Query: 638  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
             R +S  PA+  ++L    K + +S  D ++ G +V  +V  +T   +   V   G   G
Sbjct: 273  TRTISLRPATLSVSLK-KNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVF--GMVDG 329

Query: 698  TIPT----EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 753
            TI      E+  D L H   + + IK        ++L   +  L+LS    +++   Q  
Sbjct: 330  TISLLNIGEYDLDSLNHKFTIGNSIKARV---IAVLLKGGTKKLVLSILPRILSLDSQEN 386

Query: 754  SDASHIHPNSVVHGYVCNIIET-GCFVRFLGRLTGFAPRSKAVDGQRADLSKT---YYVG 809
            +DA    P     G+V + +E  G    ++   TG +     V   + +  K    Y+VG
Sbjct: 387  TDALEAFP----IGFVFDQVEVIGLDSNYIFVSTGTSSYHGQVHISKINQEKVIDDYFVG 442

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
               ++ ++ +N   G +TL++        D   +   F++  +I +      NG E+  +
Sbjct: 443  SKHKARVIGLNKFEGLLTLTM--------DPKIIDTKFMVPLQIPV--GEYINGGEI--I 490

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
            +    G+ I+ K+   NDF   V  E  SDV       +      + GS I+  +L V  
Sbjct: 491  KVLPDGAGIQVKIF--NDFDAFVPPEHMSDVRLVYPERKY-----KVGSKIKGRVLKVHG 543

Query: 930  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 989
            ++  + L    V I+   E  SN +  +   K  A+ +  VH    AIV       L   
Sbjct: 544  SKIFITLKKTLVNIED-DEVLSNFELAEIGLKTPATVEKFVHN--GAIVSFF--GNLRAF 598

Query: 990  LPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETE 1048
            LP+  + I    V D        K FL  GQ+V   +M      T  RL++ LK   + +
Sbjct: 599  LPK--NEISETFVKD-------AKDFLKKGQTVNVRIM--DRDETQQRLIVTLK---QND 644

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITE--------IKPLELRLKFGIGFHGRIHITEVNDDK 1100
             + ++++   S     ++V+A I E        I  +E     G    G I+  +++D  
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIE-----GSNLRGVIYAGQLSDGN 699

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
                  L+   + G  + A ++ +    DMK   +  LS K S +  ++  +++  +  D
Sbjct: 700  YEQTRALYKKIQAGDKLEAVVLER----DMKTRSVI-LSAKQSFINGAK-NNQIPSQFSD 753

Query: 1161 VSIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            V++  +V TGY+  V N    +     L   +    +   P+E  +  +RF+  ++V+  
Sbjct: 754  VTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNE--DILKRFYKNQSVSCR 811

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG- 1276
            V+ ++ E K  R +L    +  S+   ++ N  D+ +  I +    G +    +  + G 
Sbjct: 812  VIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTKKLITDY-TPGAKTQAKIKSIKGT 868

Query: 1277 -LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
             L VQ+  +L GR+  T+    C        D+ Q  PLS + + + +  +VL       
Sbjct: 869  QLNVQLADNLQGRLDITQ----CFEKWSDIKDKNQ--PLSQFHKDEILSVRVLGYHDAKN 922

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
             TF + +S R S + +      +L+     P   + +I+D+        +V N+     +
Sbjct: 923  HTF-LPISHRKSKNTIL-----ELTLLEKDP---ITEIKDVKVGSEHVAFVNNLARGFVW 973

Query: 1396 IMLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
            + +S  +  +V   +LSD     E  E   PIG  +  +V  ++   K + +T
Sbjct: 974  VSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILT 1026



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 164/373 (43%), Gaps = 64/373 (17%)

Query: 1083 FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFLWELSI 1140
              +   GR+   +++D+ S + E+L +   IG  + A++  I + +K             
Sbjct: 976  MSLSVKGRVSFMDLSDEVS-IFEDLENRLPIGAAIKAKVKQIDEEHK------------- 1021

Query: 1141 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE- 1199
              +++  S   +   FE  DV + ++    V KV   + L+ ++  + A  +I D+  + 
Sbjct: 1022 --NIILTSRKHTVTKFE--DVELNKQYPARVLKVLPSFVLVELAHDVVASSYITDALNDY 1077

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1259
             S L E    FH     T  VL+++K+ K + ++LR      ++K VD   ++++  +  
Sbjct: 1078 SSALNEV---FHANDYTTATVLAVDKDSKKISVLLR------TNKAVDKVINSVED-LQR 1127

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G +  + +   G+ V +G  ++G V  ++L +  + D    + + Q  P+ G   
Sbjct: 1128 GDVVKGFVKNVANN--GVYVSLGRSVHGLVRVSDLSDSYLKDWKKYFKQHQ--PVVG--- 1180

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
             + V CK  E  R +       ++L+ S              +V+     L+K EDL   
Sbjct: 1181 -KVVNCK--EEGRVL-------ITLKES--------------EVNGELNVLKKFEDLKEG 1216

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
             + +G V+ VT  G F+ L   L+   L   S ++D      +  F  G  V  ++L + 
Sbjct: 1217 EVYEGSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGIN 1276

Query: 1438 PLSKRVEVTLKTS 1450
               K++ + +K S
Sbjct: 1277 SEKKQLSLGMKVS 1289



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 101/260 (38%), Gaps = 50/260 (19%)

Query: 699  IPTEHLADHL-EHATVMKSVIKPG-YEFDQLLVLDNES---SNLLLSAKY--SLINSAQQ 751
            + + ++ D L ++++ +  V     Y    +L +D +S   S LL + K    +INS + 
Sbjct: 1065 VASSYITDALNDYSSALNEVFHANDYTTATVLAVDKDSKKISVLLRTNKAVDKVINSVED 1124

Query: 752  LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811
            L           VV G+V N+   G +V     + G    S   D    D  K +   Q 
Sbjct: 1125 L-------QRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSYLKDWKKYFKQHQP 1177

Query: 812  VRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWV 869
            V   +++   E GR+ ++LK+S                            NG  + LK  
Sbjct: 1178 VVGKVVNCKEE-GRVLITLKESEV--------------------------NGELNVLKKF 1210

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-------ATVESGSVIQA 922
            E    G V EG V +  DFGV V  +   +V G   H ++A        A    G  ++ 
Sbjct: 1211 EDLKEGEVYEGSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKV 1270

Query: 923  AILDVAKAERLVDLSLKTVF 942
             IL +   ++ + L +K  +
Sbjct: 1271 KILGINSEKKQLSLGMKVSY 1290



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 125/299 (41%), Gaps = 40/299 (13%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---ISIDLLVPGMMVSTRVQSIL 333
            G  ++  V+ ID   K + L+S   TV+K    +L       +  ++P  ++      ++
Sbjct: 1006 GAAIKAKVKQIDEEHKNIILTSRKHTVTKFEDVELNKQYPARVLKVLPSFVLVELAHDVV 1065

Query: 334  ENGVMLSFLTYFTGTV-DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
             +  +   L  ++  + ++FH           NDY       A +L VD  S+ + + L 
Sbjct: 1066 ASSYITDALNDYSSALNEVFH----------ANDY-----TTATVLAVDKDSKKISVLLR 1110

Query: 393  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVA 446
                 N+A    +   +   +  VV+     G + ++ +  V      S    V +SD++
Sbjct: 1111 T----NKAVDKVINSVEDLQRGDVVK-----GFVKNVANNGVYVSLGRSVHGLVRVSDLS 1161

Query: 447  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVK 503
            +  ++  +K +K+   V  +++  +  EG     LK S   G   ++    D+K G V +
Sbjct: 1162 DSYLKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEVNGELNVLKKFEDLKEGEVYE 1220

Query: 504  GKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            G V  V  FG  V+  G   V  LC    +++ + V     F  G  +  ++LG+ S++
Sbjct: 1221 GSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279


>gi|119191894|ref|XP_001246553.1| hypothetical protein CIMG_00324 [Coccidioides immitis RS]
 gi|392864216|gb|EAS34971.2| rRNA biogenesis protein RRP5 [Coccidioides immitis RS]
          Length = 1829

 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 215/848 (25%), Positives = 360/848 (42%), Gaps = 73/848 (8%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE--AVERGLHKKNKKKKKKTERKANETV 104
           D+ P FPRGG ++LT  ER +I   A  D  FE      G    +  + +K E  A E  
Sbjct: 73  DEAPAFPRGGNNALTPLERKQIQIQATRDVLFEQKGTPGGEILNDDSEIEKDEDTAREDA 132

Query: 105 DDLGSLFGDGISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGG 156
                        K      K        ++ K I  G K+ G V+ +   ++ + LP  
Sbjct: 133 KASKKKQKAKKHKKSAEALAKPQGPKIESLSFKRIVPGSKILGQVSSIGTHNISLALPNN 192

Query: 157 LRGLARAADALDPILDNEIEANEDN---------------LLPTIFHVGQLVSCIVLQLD 201
           L G      A+  IL  +IE    N                L +   +GQ +   V    
Sbjct: 193 LTGYVPWT-AVSKILKGKIEKLLKNGEDDENDEDTDDDDFDLKSYVRLGQYLRASVSSTT 251

Query: 202 DDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--F 257
           D+   +GK  ++I LS+       GLS   +     + A V S+ED+G I+  GL     
Sbjct: 252 DNGHGLGKGKKRIELSVDPQEANAGLSKSDMIVDSTVQASVLSVEDYGLIMDLGLEDGET 311

Query: 258 TGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGI 314
            GF+    L  +  +  VK G +   VV   +    V+ LS+D    +            
Sbjct: 312 RGFMSSKELPPSVDLSQVKEGAVFLCVVTGHNAAGNVIKLSADLQKAASAKKSHYLSSAP 371

Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
           +I+  +PG      +  +  NG+    +      VD  H  +T  T +    Y    K  
Sbjct: 372 TINTFLPGTAAEILLTEVTPNGMTGKIMGMLDVVVDAVHSGSTDETKDLTKKYRPATKAK 431

Query: 375 ARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVK----------VGDIYDQSKVVRVDRG 422
            R++   P+     +G ++  ++L  +  P+ V           +  I  + KV+++D  
Sbjct: 432 GRLICTYPSDENPKLGFSILDHVL--KFSPTSVADPQDRDDKPAISAIIPEVKVIKIDPT 489

Query: 423 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATG 479
           LGL + + +T      +V IS V + +V  L   E  +K GS    RI+GF  L+ L   
Sbjct: 490 LGLYVQLGNT--KHYGFVHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFNALDNLFLL 547

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEF 534
            L+    +       DV  G VVKGK+    +  D   G +V    G+  L P  HM++ 
Sbjct: 548 SLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLLVSLADGISGLVPGMHMADT 607

Query: 535 EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
           ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S+ AI   Y +      + G 
Sbjct: 608 KLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGT 667

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
              I+++G  ++FY  V+GF P SE+      +PS  + +GQVV    +S      R+ +
Sbjct: 668 FVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVV 727

Query: 653 SFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
           S    P+ V++      + V  G LVSG V   + + +++  +  G     +  E L+D 
Sbjct: 728 S-CKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLLLK-LEDGGLIARLSAEQLSDA 785

Query: 708 LEHATVMK-SVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPN 762
               +    + ++ G +   LL+L    ++ L+  S K SL  + ++  LP+    +  N
Sbjct: 786 APSKSAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKAALEKGTLPAKFEDLKLN 845

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           S V G V NI + G FV FLG LTGF P+    D         +   QS+  ++  ++ +
Sbjct: 846 SSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSSIDQD 905

Query: 823 TGRITLSL 830
             R  L++
Sbjct: 906 AQRFILTM 913



 Score =  163 bits (412), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 206/870 (23%), Positives = 388/870 (44%), Gaps = 124/870 (14%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 564  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGMHMADTKLQHP---EKKFREG 619

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 620  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 679

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 680  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 732

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV--VSFEEHS 898
            S + + +         +S+  N      V G +     +  + +  D G++  +S E+ S
Sbjct: 733  SIVTDAY---------KSAFENVHPGLLVSGTVFEKSSDDLLLKLEDGGLIARLSAEQLS 783

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            D     +   LA   V    +    IL + K  RL+ +S K           S + A +K
Sbjct: 784  DAAPSKSAANLARLRV-GQKLHDLLILSIRKTHRLIQVSNKP----------SLKAALEK 832

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKF 1010
                   +DL ++ +V  +V  + ++ + +         LP+      + + +D+     
Sbjct: 833  GTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG---- 888

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------- 1060
                F+  QS+  +V ++     A R +L +  + + E    +R K K++          
Sbjct: 889  ----FMRTQSISCSVSSI--DQDAQRFILTMNPVEKEEEKHERRYKTKNTNELSVSNPVD 942

Query: 1061 --------YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSN 1110
                    +  G + +A IT +K  +L +       GRI ++EV D+  ++ +       
Sbjct: 943  QDIKSLDDFKTGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRL 1002

Query: 1111 FKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
            +K  Q V  +I+   +    K         K  ++ELS KPS L   ++G   L +   V
Sbjct: 1003 YKPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLGPISLEK---V 1059

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
             +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V 
Sbjct: 1060 KVGNSFLGFVNNMGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVA 1119

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            +++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+
Sbjct: 1120 AVDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQL 1168

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1341
               L G +   ++                 D  S  +   F K  VL +         V+
Sbjct: 1169 NESLVGAIGLLDMA----------------DDYSKINPANFHKNAVLRVCV-------VD 1205

Query: 1342 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1401
            + + +    +S   S  LS  +      +  I+ L  N IV+G+V+ V   G F+ L   
Sbjct: 1206 VDVPNKRVALSVRPSKVLSASLPVEDPEIASIDRLKVNDIVRGFVRRVADIGLFVTLGHN 1265

Query: 1402 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1461
            + A V +S+LSD Y++  + EF I ++V GR+  V+  +K+V++TLK S      +  + 
Sbjct: 1266 VTAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPL- 1324

Query: 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
             L +L  G IV G++++VE +G F++I+ T
Sbjct: 1325 KLKDLKPGQIVTGKVRKVEEFGAFVSIDGT 1354



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            +SLE V+ G     +V ++ D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1054 ISLEKVKVGNSFLGFVNNMGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1112

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1113 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1165

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 394
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1166 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1221

Query: 395  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 447
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1222 VLSASLPVEDPEIASI-DRLKVNDIVRGFVRRVADIGLFVTLGH---NVTAYVRVSDLSD 1277

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 504
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1278 SYLKEWQDEFQIDQIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1337

Query: 505  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 562
            KV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L +  K+  
Sbjct: 1338 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQ 1397

Query: 563  VT 564
            ++
Sbjct: 1398 IS 1399



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 154/786 (19%), Positives = 307/786 (39%), Gaps = 117/786 (14%)

Query: 129  KNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 188
            ++I+ G +  G    + E   VI   G +RG    ++  +  + +  +          F 
Sbjct: 656  RDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQH---------FS 706

Query: 189  VGQLVSCIVLQLDDDKKEI------------GKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
            +GQ+V+   L +D ++  +              +  + ++   LL  G   E   + ++L
Sbjct: 707  IGQVVNVNALSVDAEQGRLVVSCKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLLL 766

Query: 237  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV-VRSIDRTRKVVY 295
                  +ED G I        +   P  + A  + + V  G  L  + + SI +T +++ 
Sbjct: 767  -----KLEDGGLIARLSAEQLSDAAPSKSAANLARLRV--GQKLHDLLILSIRKTHRLIQ 819

Query: 296  LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG-----TVD 350
            +S+ P ++   + K       + L     V+  V++I ++G+ + FL   TG      VD
Sbjct: 820  VSNKP-SLKAALEKGTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVD 878

Query: 351  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDI 410
              HL      T     + + + ++  +  +D  ++   LT+NP            K  + 
Sbjct: 879  DEHL------TKADFGFMRTQSISCSVSSIDQDAQRFILTMNPVEKEEEKHERRYKTKNT 932

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD----------------VAE-----EE 449
             + S    VD+ +  L D  +  V+     ++ D                V+E     E+
Sbjct: 933  NELSVSNPVDQDIKSLDDFKTGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWED 992

Query: 450  VRKLEKK---YKEGSCVRVRILGFRHLEG-----LATGILKASAFEGLVFTHSDVKP--G 499
            ++  ++    YK    V V+ILG           ++    K   FE      S   P  G
Sbjct: 993  IKDRKQPLRLYKPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLG 1052

Query: 500  MVVKGKVIAVDSFGAIVQFPG----------GVKALCPLPHMSEFEIVKPG---KKFKVG 546
             +   KV   +SF   V   G           V+   P+  +S+ ++   G   + F +G
Sbjct: 1053 PISLEKVKVGNSFLGFVNNMGDDCLWLNISPSVRGKLPIMDISD-DLALAGDIKRTFPIG 1111

Query: 547  AELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
            + L   V  + V   R+ +T K      KL I    ++ +  +I  G +TK+ +    V+
Sbjct: 1112 SALKVTVAAVDVDKNRLDLTAKHGASSKKLTI----SDLSKGMILLGKVTKVTERQVLVQ 1167

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRINLSF 654
                + G     ++  D      + +H   V++           R+  S+  S+ ++ S 
Sbjct: 1168 LNESLVGAIGLLDMADDYSKINPANFHKNAVLRVCVVDVDVPNKRVALSVRPSKVLSASL 1227

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             ++   ++  D +K+  +V G V  V    + ++V         +    L+D     + +
Sbjct: 1228 PVEDPEIASIDRLKVNDIVRGFVRRVA--DIGLFVTLGHNVTAYVRVSDLSD-----SYL 1280

Query: 715  KSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
            K   +  ++ DQ++     ++D E+  + ++ K S ++   + P     + P  +V G V
Sbjct: 1281 KE-WQDEFQIDQIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTGKV 1339

Query: 770  CNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
              + E G FV   G   L+G   RS+  + +  D  K Y  G  V++ IL ++ +  +I+
Sbjct: 1340 RKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQIS 1399

Query: 828  LSLKQS 833
            L LK S
Sbjct: 1400 LGLKAS 1405



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 86/215 (40%), Gaps = 31/215 (14%)

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            N +V G+V  + + G FV     +T +   S   D    +    + + Q VR  I  V++
Sbjct: 1243 NDIVRGFVRRVADIGLFVTLGHNVTAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDT 1302

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E  ++ ++LKQS         +   +    K+  L+                 G ++ GK
Sbjct: 1303 EAKKVQMTLKQSA--------LDPDYKPPLKLKDLKP----------------GQIVTGK 1338

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLV 934
            V +  +FG  VS +  +++ G     ++A   V       E G +++A IL +   +  +
Sbjct: 1339 VRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQI 1398

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
             L LK  + +   +   +  ++    +     +LG
Sbjct: 1399 SLGLKASYFNNDSDEADSDMSEGASEEESGDDELG 1433



 Score = 40.4 bits (93), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 18/174 (10%)

Query: 1068 QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            + ++ +I P L L ++ G   H G +HI+ V D K + + +    FK+G     RII  +
Sbjct: 480  EVKVIKIDPTLGLYVQLGNTKHYGFVHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFN 539

Query: 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV----DNEWALL 1181
               ++   FL  L  K        +  +      DV++G  V G + K+    D    LL
Sbjct: 540  ALDNL---FLLSLEKK--------VIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLL 588

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +S        +       ++LQ  +++F  G  VT  +LS+N EK+ LRL L+
Sbjct: 589  -VSLADGISGLVPGMHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLK 641


>gi|303313265|ref|XP_003066644.1| S1 RNA binding domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106306|gb|EER24499.1| S1 RNA binding domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 1888

 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 216/851 (25%), Positives = 365/851 (42%), Gaps = 76/851 (8%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE--AVERGLHKKNKKKKKKTERKANETV 104
           D+ P FPRGG ++LT  ER +I   A  D  FE      G    +  + +K E  A E  
Sbjct: 131 DEAPAFPRGGNNALTPLERKQIQIQATRDVLFEQNGTPGGEILNDDSEIEKDEDTAREDA 190

Query: 105 DDLGSLFGDGISGKL----------PRYANKITLKNISAGMKLWGVVAEVNEKDLVICLP 154
                        K           P+  + ++ K I  G K+ G V+ +   ++ + LP
Sbjct: 191 TKASKKKQKAKKHKKSAEALAKPQGPKIES-LSFKRIVPGSKILGQVSSIGTHNISLALP 249

Query: 155 GGLRGLARAADALDPILDNEIEANEDN---------------LLPTIFHVGQLVSCIVLQ 199
             L G      A+  IL  +IE    N                L +   +GQ +   V  
Sbjct: 250 NNLTGYVPWT-AVSKILKGKIEKLLKNAEDDENDEDTDEDDFDLKSYVRLGQYLRASVSS 308

Query: 200 LDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-- 255
             D+   +GK  ++I LS+       GLS   +     + A V S+ED+G I+  GL   
Sbjct: 309 TTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMIVDSTVQASVLSVEDYGLIMDLGLEDG 368

Query: 256 SFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--K 312
           +  GF+    L  +  +  VK G +   VV   +    V+ LS++    +          
Sbjct: 369 NTRGFMSSKELPPSVDLSQVKEGAVFLCVVTGHNAAGNVIKLSANLQKAASAKKSHYLSS 428

Query: 313 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
             +I+  +PG      +  +  NG+  + +      VD  H  +T  T +    Y    K
Sbjct: 429 APTINTFLPGTAAEILLTEVTPNGMTGNIMGMLDVVVDAVHSGSTDETKDLTKKYRPATK 488

Query: 373 VNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVK----------VGDIYDQSKVVRVD 420
              R++   P+     +G ++  ++L  +  P+ V           +  I  + KV++VD
Sbjct: 489 ATGRLICTYPSDENPKLGFSILDHVL--KFSPTSVADPQDRDDKPAISAIIPEVKVIKVD 546

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLA 477
             LGL + + +T      ++ IS V + +V  L   E  +K GS    RI+GF  L+ L 
Sbjct: 547 PTLGLYVQLGNT--KHYGFIHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFNALDNLF 604

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMS 532
              L+    +       DV  G VVKGK+    +  D   G +V    G+  L P  HM+
Sbjct: 605 LLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLLVSLADGISGLVPGVHMA 664

Query: 533 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           + ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S+ AI   Y +      + 
Sbjct: 665 DAKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSP 724

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G    I+++G  ++FY  V+GF P SE+      +PS  + +GQVV    +S      R+
Sbjct: 725 GTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRL 784

Query: 651 NLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
            +S    P+ V++      + V  G LVSG V   + + +++  +  G     +  E L+
Sbjct: 785 VVS-CKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLLLK-LEDGGLIARLSAEQLS 842

Query: 706 DHL-EHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIH 760
           D     A    + ++ G +   LL+L    ++ L+  S K SL  + ++  LP+    + 
Sbjct: 843 DAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKGTLPAKFEDLK 902

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
            NS V G V NI + G FV FLG LTGF P+    D         +   QS+  ++  ++
Sbjct: 903 LNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSSID 962

Query: 821 SETGRITLSLK 831
            +  R  L++K
Sbjct: 963 QDAQRFILTMK 973



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 205/869 (23%), Positives = 391/869 (44%), Gaps = 122/869 (14%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 623  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGVHMADAKLQHP---EKKFREG 678

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 679  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 738

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 739  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 791

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            S + + +    K A               E    G ++ G V E +   +++  E+   +
Sbjct: 792  SIVTDAY----KSAF--------------ENVHPGLLVSGTVFEKSSDDLLLKLEDGG-L 832

Query: 901  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKK 959
               ++  QL+ A     +   A +    K   L+ LS+ KT  + +     S + A +K 
Sbjct: 833  IARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKG 892

Query: 960  RKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKFP 1011
                  +DL ++ +V  +V  + ++ + +         LP+      + + +D+      
Sbjct: 893  TLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG----- 947

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV-------- 1063
               F+  QS+  +V ++     A R +L +K + + E    +R K K++ ++        
Sbjct: 948  ---FMRTQSISCSVSSI--DQDAQRFILTMKPVEKEEEKHERRYKTKNTNELSVSNPVDQ 1002

Query: 1064 ----------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNF 1111
                      G + +A IT +K  +L +       GRI ++EV D+  ++ +       +
Sbjct: 1003 DIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLY 1062

Query: 1112 KIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
            K  Q V  +I+   +    K         K  ++ELS KPS L   ++    L +   V 
Sbjct: 1063 KPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEK---VK 1119

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V +
Sbjct: 1120 VGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAA 1179

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
            ++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+ 
Sbjct: 1180 VDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQLN 1228

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
              L G +   ++                 D  S  +   F K  VL +         V++
Sbjct: 1229 ESLVGAIGLLDMA----------------DDYSKINPANFHKNAVLRVCV-------VDV 1265

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             + +    +S   S  LST +      +  I+ L  N IV+G+V+ +   G F+ L   +
Sbjct: 1266 DVPNKRVALSVRPSKVLSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNV 1325

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1462
             A V +S+LSD Y++  + EF I ++V GR+  V+P +K+V++TLK S      +  +  
Sbjct: 1326 TAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPL-K 1384

Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            L +L  G IV G++++VE +G F++I+ T
Sbjct: 1385 LKDLKPGQIVTGKVRKVEEFGAFVSIDGT 1413



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            +SLE V+ G     +V +I D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1113 ISLEKVKVGSSFLGFVNNIGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1171

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1172 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1224

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 394
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1225 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1280

Query: 395  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 447
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1281 VLSTSLPVEDPEIASI-DRLKVNDIVRGFVRRIADIGLFVTLGH---NVTAYVRVSDLSD 1336

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKG 504
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1337 SYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1396

Query: 505  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 562
            KV  V+ FGA V   G   +  LC    M+E +I    K ++ G  +  ++L +  K+  
Sbjct: 1397 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKITDARKLYEQGDIVKAKILKIDLKKDQ 1456

Query: 563  VT 564
            ++
Sbjct: 1457 IS 1458



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 154/791 (19%), Positives = 306/791 (38%), Gaps = 127/791 (16%)

Query: 129  KNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 188
            ++I+ G +  G    + E   VI   G +RG    ++  +  + +  +          F 
Sbjct: 715  RDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQH---------FS 765

Query: 189  VGQLVSCIVLQLDDDKKEI------------GKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
            +GQ+V+   L +D ++  +              +  + ++   LL  G   E   + ++L
Sbjct: 766  IGQVVNVNALSVDAEQGRLVVSCKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLLL 825

Query: 237  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL--LLQGVVRSIDRTRKVV 294
                  +ED G I        +   P    A  + + V   L  LL   + SI +T +++
Sbjct: 826  -----KLEDGGLIARLSAEQLSDAAPSKAAANLARLRVGQKLHDLL---ILSIRKTHRLI 877

Query: 295  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG-----TV 349
             +S+ P ++   + K       + L     V+  V++I ++G+ + FL   TG      V
Sbjct: 878  QVSNKP-SLKTALEKGTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLV 936

Query: 350  DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGD 409
            D  HL      T     + + + ++  +  +D  ++   LT+ P            K  +
Sbjct: 937  DDEHL------TKADFGFMRTQSISCSVSSIDQDAQRFILTMKPVEKEEEKHERRYKTKN 990

Query: 410  IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD----------------VAE-----E 448
              + S    VD+ +  L D  +  V+     ++ D                V+E     E
Sbjct: 991  TNELSVSNPVDQDIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWE 1050

Query: 449  EVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-----------FTHS 494
            +++  ++    YK    V V+ILG    +      L  S   G V               
Sbjct: 1051 DIKDRKQPLRLYKPKQVVPVKILGVH--DARTHKFLPISHRTGKVPVFELSAKPSSLKSP 1108

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPG----------GVKALCPLPHMSEFEIVKPG---K 541
            D+ P  + K KV +  SF   V   G           V+   P+  +S+ ++   G   +
Sbjct: 1109 DLDPISLEKVKVGS--SFLGFVNNIGDDCLWLNISPSVRGKLPIMDISD-DLALAGDIKR 1165

Query: 542  KFKVGAELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
             F +G+ L   V  + V   R+ +T K      KL I    ++ +  +I  G +TK+ + 
Sbjct: 1166 TFPIGSALKVTVAAVDVDKNRLDLTAKHGASSKKLTI----SDLSKGMILLGKVTKVTER 1221

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRR 649
               V+    + G     ++  D      + +H   V++           R+  S+  S+ 
Sbjct: 1222 QVLVQLNESLVGAIGLLDMADDYSKINPANFHKNAVLRVCVVDVDVPNKRVALSVRPSKV 1281

Query: 650  INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
            ++ S  ++   ++  D +K+  +V G V  +    + ++V         +    L+D   
Sbjct: 1282 LSTSLPVEDPEIASIDRLKVNDIVRGFVRRIAD--IGLFVTLGHNVTAYVRVSDLSD--- 1336

Query: 710  HATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
              + +K   +  ++ DQ++     ++D E+  + ++ K S ++   + P     + P  +
Sbjct: 1337 --SYLKE-WQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQI 1393

Query: 765  VHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V G V  + E G FV   G   L+G   RS+  + +  D  K Y  G  V++ IL ++ +
Sbjct: 1394 VTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKITDARKLYEQGDIVKAKILKIDLK 1453

Query: 823  TGRITLSLKQS 833
              +I+L LK S
Sbjct: 1454 KDQISLGLKAS 1464


>gi|50303899|ref|XP_451897.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641029|emb|CAH02290.1| KLLA0B08239p [Kluyveromyces lactis]
          Length = 1729

 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 205/768 (26%), Positives = 351/768 (45%), Gaps = 90/768 (11%)

Query: 128 LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPILDNEIEA 177
           +K ++ G  + G +  +++ +L I L  GL G          + +  + LD  ++++ E 
Sbjct: 111 MKQMTKGTIVLGQIQSISKHELKISLVDGLHGYVSLTDISEQMTKILENLDESMESDDEK 170

Query: 178 NEDNL---------------LPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
           NED+                LP +   F +GQ + C+V Q +   +    +K+ LS+  S
Sbjct: 171 NEDSEYDSSDDESDITTPKELPDLNKYFKIGQWLRCMV-QNNSALESNKNKKLDLSIEPS 229

Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL 279
           ++      + + +   L   +KSIEDHG IL  G+ + TGF+ + ++ E S +   PG++
Sbjct: 230 VV-NVFEDDDLAKNCPLQCSLKSIEDHGAILDIGIENLTGFISKKDIPEFSSL--LPGMV 286

Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
               V    R+ + V ++ D   ++   TK  K  SID +VPG  +    Q+I  +GV+ 
Sbjct: 287 FLATVTK--RSGRTVNVNLD---LASKNTKVEKISSIDAIVPGQSIDFLPQTITNHGVIG 341

Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL---FVDPTSRAVGLTLNPYL- 395
                 T  + + H  N F   + K+ Y+    VNARIL    V    +   ++  P++ 
Sbjct: 342 KAFGLITAFLPLPH-SNFFTVEDLKHHYSIGDLVNARILATTIVKSGDKVAVVSTQPHII 400

Query: 396 -LHNRAPPSHV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD--VAEE 448
            LH +   +       VG I+D   V   D              S   YV+I++  V + 
Sbjct: 401 SLHPKLQETEALESFPVGYIFDSCTVKGRD--------------SQFFYVSINNEQVGQI 446

Query: 449 EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVI 507
            + K  +    G+ V+ RILG+ +++ L T     +  +      SD+  G V+   +++
Sbjct: 447 HLSKAGETEPTGT-VKARILGYNNVDKLYTLTSDPALLDVKYLRSSDIPAGEVLSACEIV 505

Query: 508 AVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS-KRITVTH 565
            V   G  ++ F    KA  P  H+S+  +V P +KFK+G+++  RVL V S  R+TVT 
Sbjct: 506 TVSGKGIELKIFNDQFKAFVPPLHISDTRLVYPERKFKIGSKVKGRVLNVDSVGRVTVTL 565

Query: 566 KKTLVKSKLAILSSYAEATD-------RLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           KK++V +    ++   +  D        L T G +   + +GC + F+N ++ F P  E+
Sbjct: 566 KKSIVNADEESVTLVCKNDDIQTVESQELKTIGTVEIFKPNGCVISFFNNIKAFVPNKEI 625

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLV 673
                 +P     +GQ V  +I++      RI  S  +     S+     + LV   S++
Sbjct: 626 SEAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASCKISAESSSKQKSAIESLVVGKSII 685

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDN 732
             +V   T ++V+V     G  +G I T HL+D  +E     +  +K   E  + LVLD 
Sbjct: 686 DAIVIEKTKDSVIVESKDSGL-RGVIYTGHLSDDRIEQNRASQKKLKINSEV-RGLVLDK 743

Query: 733 E--SSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           +  +    +S K SLI  A+   LP   SD  +      +HGYV ++ + G FV F G+ 
Sbjct: 744 DIRTHVFNMSCKKSLIKDAEDGTLPLSFSDIKNKDKTEPMHGYVKSVSDRGVFVAFNGKF 803

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS-LKQ 832
            G    S A + +  D+ K YY+ QSV   +L  + E  R  L+ LKQ
Sbjct: 804 VGLVLPSYAAETRDIDIHKKYYINQSVTVYLLRTDEEHERFLLTILKQ 851



 Score =  124 bits (311), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 195/742 (26%), Positives = 321/742 (43%), Gaps = 104/742 (14%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC + F   +  F P  +  +       +   +GQSV   IL+ + E  RI  S K S  
Sbjct: 607  GCVISFFNNIKAFVPNKEISEAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASCKISAE 666

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 893
            SS+      E  ++ + I               ++  +I    +  + ES D G+  V+ 
Sbjct: 667  SSSKQKSAIESLVVGKSI---------------IDAIVIEKTKDSVIVESKDSGLRGVIY 711

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
                SD    I  ++ +   ++  S ++  +LD      + ++S K   I    +     
Sbjct: 712  TGHLSD--DRIEQNRASQKKLKINSEVRGLVLDKDIRTHVFNMSCKKSLIKDAEDGTLPL 769

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFP 1011
                 K K +     G  ++V+     V  N  ++ L LP Y      A   D +  K  
Sbjct: 770  SFSDIKNKDKTEPMHGYVKSVSDRGVFVAFNGKFVGLVLPSY-----AAETRDIDIHK-- 822

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLL-LLKAISETETSSS-------KRAKKKSSYDV 1063
             K ++N QSV  TV  L +     R LL +LK  ++ +  +S       K  K  S + +
Sbjct: 823  -KYYIN-QSV--TVYLLRTDEEHERFLLTILKQKTDVKKINSSVINPVDKSIKDLSDFTI 878

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G + +A IT +K  +L +      HGRI I+EV D   ++ E     S +K   +++ R+
Sbjct: 879  GKVTKATITSVKKNQLNVTLADNVHGRISISEVFDSFEDIKEQKAPLSVYKKNDSLSVRV 938

Query: 1122 IA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            I     KS K         KS L ELS KPS LT S +  K L    D +  Q   G++ 
Sbjct: 939  IGFHDIKSRKFLPISHTTSKSHLVELSAKPSSLT-SPVSEKKL---KDFTPEQTTFGFIN 994

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLR 1231
               N+ A LTI+  +KA+L I + + E  +     + ++ IG AV   V SI+ E   L 
Sbjct: 995  NYSNDTAWLTITPTVKAKLPIFEISDEGHDFSLPIEEKYPIGTAVRVTVKSIDTEHDSLV 1054

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            +  R      S     IS       I EGD++  R+  +      +++ +G  + G V F
Sbjct: 1055 VSAR------SHAISSISE------IKEGDVLPARVISVQDTY--VLLSLGKDVTG-VSF 1099

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQ--FVKCKVLEISRTVRGTFHVELSLRSSLD 1349
                   ++D L  Y     D    YD  +   V   VL +         + LSLRSS  
Sbjct: 1100 -------ITDALDDYSLSLKDV---YDSKKKNIVSATVLNVDI---DNNKINLSLRSS-- 1144

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
              S  + + +S+             +L    IV+G+VK++T KG FI LS  L A V +S
Sbjct: 1145 --SPKDRTIISS------------SELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVS 1190

Query: 1410 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1469
             L+D +++  +K F  G+ V G+V++ +    RV +TL+ S+      + + + S+++VG
Sbjct: 1191 KLTDAFIKDWKKFFRRGQSVVGKVVNCDN-DDRVLLTLRESEV-NGQLNVLKSYSDINVG 1248

Query: 1470 DIVIGQIKRVESYGLFITIENT 1491
            DI  G +K V  +G+F+ ++ T
Sbjct: 1249 DIFQGSVKNVTDFGVFVKLDGT 1270



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 36/196 (18%)

Query: 756  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
            +S +    +V G+V +I + G F+     L  F P SK  D    D  K +  GQSV   
Sbjct: 1154 SSELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVSKLTDAFIKDWKKFFRRGQSVVGK 1213

Query: 816  ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWVEGFI 873
            +++ +++  R+ L+L++S                            NG  + LK      
Sbjct: 1214 VVNCDND-DRVLLTLRESEV--------------------------NGQLNVLKSYSDIN 1246

Query: 874  IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 926
            +G + +G V    DFGV V  +   +V G     ++A A +++       G  ++A +L 
Sbjct: 1247 VGDIFQGSVKNVTDFGVFVKLDGTVNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLK 1306

Query: 927  VAKAERLVDLSLKTVF 942
                ++ + L LK  +
Sbjct: 1307 TNPEKKQISLGLKASY 1322



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            + + S++K G +V+G V ++   G  +     ++A  P+  +++  I    K F+ G  +
Sbjct: 1151 IISSSELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVSKLTDAFIKDWKKFFRRGQSV 1210

Query: 550  VFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 607
            V +V+   +  R+ +T +++ V  +L +L SY++     I  G +  +   G FV+    
Sbjct: 1211 VGKVVNCDNDDRVLLTLRESEVNGQLNVLKSYSDINVGDIFQGSVKNVTDFGVFVKLDGT 1270

Query: 608  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
              V G A +SE+         +++  G  VK  ++ + P  ++I+L
Sbjct: 1271 VNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLKTNPEKKQISL 1316



 Score = 48.5 bits (114), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 19/270 (7%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHF-----GLPSFTGFLPRNNLAENSGIDVKPGLLL 280
            S+  ++EG VL A V S++D   +L       G+   T  L   +L+     D K   ++
Sbjct: 1064 SISEIKEGDVLPARVISVQDTYVLLSLGKDVTGVSFITDALDDYSLSLKDVYDSKKKNIV 1123

Query: 281  QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
               V ++D     + LS     +     KD   IS   L  G +V   V+SI + GV +S
Sbjct: 1124 SATVLNVDIDNNKINLS-----LRSSSPKDRTIISSSELKRGDIVRGFVKSITDKGVFIS 1178

Query: 341  FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR- 399
              +     V +  L + F   +WK  + + + V  +++  D   R + LTL    ++ + 
Sbjct: 1179 LSSVLQAFVPVSKLTDAF-IKDWKKFFRRGQSVVGKVVNCDNDDRVL-LTLRESEVNGQL 1236

Query: 400  ---APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
                  S + VGDI+  S     D G+ + LD     V+       S+VA+ ++  L+  
Sbjct: 1237 NVLKSYSDINVGDIFQGSVKNVTDFGVFVKLD---GTVNVTGLAHKSEVADAKIDNLQNL 1293

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAF 486
            + EG  V+  +L     +   +  LKAS F
Sbjct: 1294 FGEGDKVKAIVLKTNPEKKQISLGLKASYF 1323



 Score = 40.4 bits (93), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 167/423 (39%), Gaps = 53/423 (12%)

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV-KPGLLLQGVVRSIDRTRK-- 292
            +  YVKS+ D G  + F    F G +  +  AE   ID+ K   + Q V   + RT +  
Sbjct: 783  MHGYVKSVSDRGVFVAFN-GKFVGLVLPSYAAETRDIDIHKKYYINQSVTVYLLRTDEEH 841

Query: 293  ----VVYLSSDPD------TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
                +  L    D      +V   V K +K +S D  + G +    + S+ +N + ++  
Sbjct: 842  ERFLLTILKQKTDVKKINSSVINPVDKSIKDLS-DFTI-GKVTKATITSVKKNQLNVTLA 899

Query: 343  TYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARIL-FVDPTSRA----------- 386
                G + I  + ++F     +      Y ++  ++ R++ F D  SR            
Sbjct: 900  DNVHGRISISEVFDSFEDIKEQKAPLSVYKKNDSLSVRVIGFHDIKSRKFLPISHTTSKS 959

Query: 387  --VGLTLNPYLLHNRAPPSHVKVGDIYDQSK----VVRVDRGLGLLLDIPSTPVSTPAYV 440
              V L+  P  L   +P S  K+ D   +      +         L   P+     P + 
Sbjct: 960  HLVELSAKPSSL--TSPVSEKKLKDFTPEQTTFGFINNYSNDTAWLTITPTVKAKLPIF- 1016

Query: 441  TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 500
             ISD   +    +E+KY  G+ VRV +             L  SA    + + S++K G 
Sbjct: 1017 EISDEGHDFSLPIEEKYPIGTAVRVTVKSI----DTEHDSLVVSARSHAISSISEIKEGD 1072

Query: 501  VVKGKVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEI----VKPGKKFKVGAELVFRVLG 555
            V+  +VI+V     ++     V  +  +   + ++ +    V   KK  + +  V  V  
Sbjct: 1073 VLPARVISVQDTYVLLSLGKDVTGVSFITDALDDYSLSLKDVYDSKKKNIVSATVLNV-D 1131

Query: 556  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            + + +I ++ + +  K +  I SS  +  D  I  G++  I   G F+   + +Q F P 
Sbjct: 1132 IDNNKINLSLRSSSPKDRTIISSSELKRGD--IVRGFVKSITDKGVFISLSSVLQAFVPV 1189

Query: 616  SEL 618
            S+L
Sbjct: 1190 SKL 1192


>gi|240282264|gb|EER45767.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus H143]
          Length = 1781

 Score =  177 bits (449), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 202/835 (24%), Positives = 356/835 (42%), Gaps = 57/835 (6%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKN---KKKKKKTERKANETVDDLG 108
           P FPRGG + L+  E+ +IH +   +    ++G   ++    +   + +R + E      
Sbjct: 68  PAFPRGGANILSPLEQKQIHIQATRDVLFEQKGAQAQDDIDNEDGTQKKRSSKEFGIKST 127

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAAD 165
                     +P+ + K   + I  G K+ G V+ +N  D+ + LP  L G   L   + 
Sbjct: 128 KGKTKSKKHTIPQASTK--EERIVVGSKILGQVSSINAHDIGLSLPNNLTGYIPLTAVSK 185

Query: 166 ALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDDD---KKEIG 208
            L   ++  + ++++                L + F +GQ +   V   + +    K  G
Sbjct: 186 TLQQKIEKLLNSSQEEDDNSDGDDGGDGDLDLKSYFKLGQYLRAAVTSTETEVNHGKIKG 245

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNL 266
           K+ I LS+       GLS   +     + A V S+EDHG ++  GL      GF+    +
Sbjct: 246 KKHIELSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMDLGLEDGQTRGFMSSKEI 305

Query: 267 AEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGM 323
             +   + +K G +   VV   +    VV LS++  T              +I+  +PG 
Sbjct: 306 PHDLELLQIKEGTVFLCVVTGHNANGSVVKLSANLPTAGSIKKSHFLASAPTINSFLPGT 365

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 383
                +  +   G+    +      VDI     T    +    Y+   K+  R++   PT
Sbjct: 366 AAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGATAGKEDITARYHVGAKIKGRLICTFPT 425

Query: 384 SRAVGL---------TLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
           +  + L            P +L +++    V  +  I  + KV +V+ GLG+ +      
Sbjct: 426 AEPLKLGFSILDHVVKFTPTVLDHKSSCEGVPAISAIVPEVKVTKVEPGLGVYVQFNDKH 485

Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
                   +SD   + +   +  Y   S    RI+GF  L+ L    L+    +      
Sbjct: 486 YGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVGFSALDNLYLLSLERKVIDQPFLRL 545

Query: 494 SDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
            DV  G VVKGK+    I  D   G IV    G+  L P  HMS+ ++  P KKF+ G +
Sbjct: 546 EDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREGVQ 605

Query: 549 LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +  R+L V  + +++ +T KKTL+ S+ +    Y++      + G I  I+ HG  V+FY
Sbjct: 606 VSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYSDILPGNQSPGTIISIQSHGAIVQFY 665

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
             V+GF P SE+      +P+  +++GQVV    ++     R++ +S    +  T   + 
Sbjct: 666 GEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDAELRKLVVSCKDQLSSTEAYKR 725

Query: 665 DL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            L  +  G+ VSG V   +   +++ +   G     +  EH++D          + I+ G
Sbjct: 726 ALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLV-ARLNAEHVSDGQASRNGAALARIRVG 784

Query: 722 YEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGC 777
            + ++LL+L+ + S+ L+  + K SL  + Q  +LP+    +   S V G+V NII  G 
Sbjct: 785 QKLNELLILNMQKSHRLIKVTNKPSLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGL 844

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           FV FLG LTGF P+    D      S  Y + Q +   +  +  +  R  L+LK+
Sbjct: 845 FVEFLGGLTGFVPKRLVDDDHVNKPSFGYALAQPISLTVQSIEDDRQRFILTLKE 899



 Score =  149 bits (377), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 219/954 (22%), Positives = 411/954 (43%), Gaps = 138/954 (14%)

Query: 593  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 648
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI   +  S 
Sbjct: 468  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARI---VGFSA 524

Query: 649  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 699
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 525  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 583

Query: 700  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 584  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 640

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 641  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 700

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            +V++E  ++ +S K    S+       EH              H G+             
Sbjct: 701  NVDAELRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 735

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 927
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 736  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 795

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 986
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 796  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 845

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 846  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 902

Query: 1047 TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 1088
             +   S R K+  + +                   G + +A++  IK  ++ ++      
Sbjct: 903  GKQRVSDRDKESDNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 962

Query: 1089 GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1137
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 963  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1022

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1023 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1079

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1080 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1130

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
             +G+I+ GR++++      ++VQ+   + G ++  ++                 D  S  
Sbjct: 1131 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDMA----------------DDYSKI 1172

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
            +   F K ++L +         +++  +  L  M S+     S  +  P   +  I  + 
Sbjct: 1173 NPADFHKNELLRVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIK 1225

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
             N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +
Sbjct: 1226 VNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILAD 1285

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            P S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I+ T
Sbjct: 1286 PESNKLQMSLKQSVLDPNYKTPI-TIKDLKRGQTVTGKVRNVEEFGAFIVIDGT 1338



 Score = 47.0 bits (110), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1125 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNELL 1183

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 423
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1184 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1242

Query: 424  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1243 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1297

Query: 484  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 538
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1298 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1357

Query: 539  PGKKFKVG 546
              K F+ G
Sbjct: 1358 ARKLFEKG 1365


>gi|392597567|gb|EIW86889.1| hypothetical protein CONPUDRAFT_115715 [Coniophora puteana
           RWD-64-598 SS2]
          Length = 1457

 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 229/913 (25%), Positives = 384/913 (42%), Gaps = 123/913 (13%)

Query: 54  FPRGGGHSLTQRERDEIHAE----VDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS 109
           FPRGGG +LT  E   I AE     DAE  A  +    K  +KK   E+K          
Sbjct: 46  FPRGGGTTLTPLEVKSIRAEGAREADAELFAAPKS---KRPRKKNDKEKKL--------- 93

Query: 110 LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL------------ 157
              D    +       +  K ++ GMK+ G +  V    L++ LP  L            
Sbjct: 94  ---DPAQKRDVARVEHLNYKRLTPGMKILGRIHSVRPLALIVSLPNQLMAHVPITQVTSQ 150

Query: 158 --RGLARAADALDPILDNEIEANEDNLLPTI---FHVGQLVSCIVL-------------- 198
             R L    +  D   + E  A   N  P +   F+ GQ V  +V               
Sbjct: 151 FTRHLESMDENEDEDEEEEEGAEAKNETPELHDLFYPGQFVRAVVTNVYAPGVSEVSGLG 210

Query: 199 QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
           ++ DD  +  KR + LSL    +  G+    +Q G  LTA VKS+EDHGY+L  G+P  +
Sbjct: 211 RVRDDIAKASKR-VELSLVPEDVNAGVQKSDLQLGFTLTAAVKSVEDHGYLLDLGVPDVS 269

Query: 259 GFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS 315
           GF+   +  +    D K    GLL   V++     R    +S D    +     ++  +S
Sbjct: 270 GFMSFQDAQKGRFGDKKLPIGGLLDVAVLKKSGNGRTCT-VSLDAQLFATSSLSEVTNVS 328

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
              ++PG +V + + +I   G+ +  L +F GTVD  HL +          +   +KV  
Sbjct: 329 S--ILPGTLVQSLITAISPEGINVQVLGFFDGTVDDAHLPSG-------TKFKVGQKVKC 379

Query: 376 RILFVDPTSRA--VGLTLNPYLL-------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 426
           R+L+  P S    + L L+ +++        N    S   +G I D  KV +V+   GL 
Sbjct: 380 RVLYAIPASSPPKLVLALSDHIISLVSQDAENEQLQSSYPIGTILDDVKVAKVEGERGLT 439

Query: 427 LDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKA 483
           + +         ++ IS  A++ V  L      ++ G+  R R++G    + +     K 
Sbjct: 440 VAVQP---GLAGFIHISQTADDRVPSLSASSGPWRCGTLHRARVIGHHIFDRVLQLSSKP 496

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
           S  E       D+  G V+KG V  +      +   G    +    H ++  +  P K+F
Sbjct: 497 SVLEQKFVQAGDIAVGEVMKGSVKKLTETALFISISGNADGVIWPNHYADIALKHPSKRF 556

Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           K G  +  RVL V  + KR+ +T KKTLV S+L I+SS+ +A   ++ H  + K+ + G 
Sbjct: 557 KPGGSVKCRVLTVDPERKRVVLTAKKTLVDSELPIISSFEDAKVGMVVHAVVFKVFEKGL 616

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPAS-RRINLSF 654
            + F+N V+ F P  E     G   +  + VG+VVK RI+      S I AS R+   SF
Sbjct: 617 QLEFFNNVKAFVPVREASEGTGTL-TDAFPVGKVVKVRIINIDTDTSRIVASVRQAASSF 675

Query: 655 MMKPTRVSEDDLVKLGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
                 VS+   V++G+ VSG + ++   NAVV   +     +  +  ++LA    + TV
Sbjct: 676 KATAGDVSQ---VEVGNEVSGTIAELHKLNAVV--SLKPIDVRALVSLKNLASS-RNTTV 729

Query: 714 --MKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGY 768
             +K  +  G E  +L+++  ++E   ++ + K     ++ ++ P     + P  VV G 
Sbjct: 730 AQLKGTVAIGDEVHELVIVSRNSEKGFVIAACKPKSKTASHKIGPLSMETVAPGQVVGGR 789

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV-RSNILDVNSETGRIT 827
           V      G  V+   +++GF   + + D    +    +    SV ++ +++V+ E  ++ 
Sbjct: 790 VLRQGLRGAIVKLTPKISGFLHPTDSCDNY--ETGTPFPPKDSVLKATVIEVDKENNQLD 847

Query: 828 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 887
           LS++ S  S   +S +                     E+   E    G  + G V    D
Sbjct: 848 LSMRPSRLSGDVSSVVDR-------------------EINSFEDIKRGDTLRGFVKSVAD 888

Query: 888 FGVVVSFEEHSDV 900
            G+ V    H D 
Sbjct: 889 HGLFVMLGRHVDA 901



 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 197/766 (25%), Positives = 324/766 (42%), Gaps = 127/766 (16%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            ++ S I P ++V   +  I   G  V+ LG   G       VD         + VGQ V+
Sbjct: 325  TNVSSILPGTLVQSLITAISPEGINVQVLGFFDG------TVDDAHLPSGTKFKVGQKVK 378

Query: 814  SNILDV--NSETGRITLSLKQSCCS--STDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
              +L     S   ++ L+L     S  S DA   Q           LQSS        + 
Sbjct: 379  CRVLYAIPASSPPKLVLALSDHIISLVSQDAENEQ-----------LQSS--------YP 419

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSV 919
             G I+  V   KV       V V       + GFI   Q A   V S          G++
Sbjct: 420  IGTILDDVKVAKVEGERGLTVAV----QPGLAGFIHISQTADDRVPSLSASSGPWRCGTL 475

Query: 920  IQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
             +A ++     +R++ LS K +V   +F +A                 D+ V + +   V
Sbjct: 476  HRARVIGHHIFDRVLQLSSKPSVLEQKFVQAG----------------DIAVGEVMKGSV 519

Query: 979  EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 1038
            + + E  L +S+      + + +       K P K+F  G SV   V+ +       R++
Sbjct: 520  KKLTETALFISISGNADGVIWPNHYADIALKHPSKRFKPGGSVKCRVLTVDPERK--RVV 577

Query: 1039 LLLKAI---SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095
            L  K     SE    SS    K     VG +V A + ++    L+L+F       + + E
Sbjct: 578  LTAKKTLVDSELPIISSFEDAK-----VGMVVHAVVFKVFEKGLQLEFFNNVKAFVPVRE 632

Query: 1096 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1155
             ++    + +     F +G+ V  RII      D   S +        + +V +  S   
Sbjct: 633  ASEGTGTLTDA----FPVGKVVKVRII----NIDTDTSRI--------VASVRQAASSFK 676

Query: 1156 FEECDVS---IGQRVTGYV---YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1209
                DVS   +G  V+G +   +K++   +L  I       L  L S+   + + + +  
Sbjct: 677  ATAGDVSQVEVGNEVSGTIAELHKLNAVVSLKPIDVRALVSLKNLASSRN-TTVAQLKGT 735

Query: 1210 FHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
              IG  V   V+ S N EK  +    +P     S K   +S   M+T +  G +VGGR+ 
Sbjct: 736  VAIGDEVHELVIVSRNSEKGFVIAACKPKSKTASHKIGPLS---MET-VAPGQVVGGRV- 790

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
             +  G+ G +V++ P + G +H T        D    Y+ G   P    D    +K  V+
Sbjct: 791  -LRQGLRGAIVKLTPKISGFLHPT--------DSCDNYETGT--PFPPKD--SVLKATVI 837

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
            E+ +       ++LS+R S        S D+S+ VD   + +   ED+     ++G+VK+
Sbjct: 838  EVDKE---NNQLDLSMRPS------RLSGDVSSVVD---REINSFEDIKRGDTLRGFVKS 885

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            V   G F+ML R +DA+V +  L D YV+  +  F   +LV GR+LSV+P +K+VE+T +
Sbjct: 886  VADHGLFVMLGRHVDARVQIKELFDEYVKDWKPRFKANQLVKGRILSVDPENKKVEMTFR 945

Query: 1449 TSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            + D +R A+      L++LH G  V G+IKR+E+YGLFI +E + +
Sbjct: 946  SGDLNRNATNGL--TLNDLHEGQKVKGRIKRIEAYGLFIEVEGSKI 989



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKP-GLLLQ 281
            LS+ETV  G V+   V      G I+    P  +GFL   +  +N  +G    P   +L+
Sbjct: 775  LSMETVAPGQVVGGRVLRQGLRGAIVKL-TPKISGFLHPTDSCDNYETGTPFPPKDSVLK 833

Query: 282  GVVRSIDRTRKVVYLSSDPDTVSKCVTK--DLKGISIDLLVPGMMVSTRVQSILENGVML 339
              V  +D+    + LS  P  +S  V+   D +  S + +  G  +   V+S+ ++G+ +
Sbjct: 834  ATVIEVDKENNQLDLSMRPSRLSGDVSSVVDREINSFEDIKRGDTLRGFVKSVADHGLFV 893

Query: 340  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
                +    V I  L + +   +WK  +  ++ V  RIL VDP ++ V +T     L NR
Sbjct: 894  MLGRHVDARVQIKELFDEY-VKDWKPRFKANQLVKGRILSVDPENKKVEMTFRSGDL-NR 951

Query: 400  APPSHVKVGDIYDQSKVV-RVDR--GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEK 455
               + + + D+++  KV  R+ R    GL +++  + +S   + + +SD  + +V    +
Sbjct: 952  NATNGLTLNDLHEGQKVKGRIKRIEAYGLFIEVEGSKISGLCHKSELSDNKDADVDVALR 1011

Query: 456  KYKEGSCVRVRI 467
             ++EG  V+  I
Sbjct: 1012 TFREGDTVQAMI 1023



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 16/140 (11%)

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK----GLSLETVQEGMVLTAYVKS 242
            F   QLV   +L +D + K     K+ ++ R   L +    GL+L  + EG  +   +K 
Sbjct: 920  FKANQLVKGRILSVDPENK-----KVEMTFRSGDLNRNATNGLTLNDLHEGQKVKGRIKR 974

Query: 243  IEDHGYILHFGLPSFTGFLPRNNLAENSGIDV-------KPGLLLQGVVRSIDRTRKVVY 295
            IE +G  +       +G   ++ L++N   DV       + G  +Q +++SID +++ + 
Sbjct: 975  IEAYGLFIEVEGSKISGLCHKSELSDNKDADVDVALRTFREGDTVQAMIKSIDVSKRKIS 1034

Query: 296  LSSDPDTVSKCVTKDLKGIS 315
                P   S     D  G S
Sbjct: 1035 FGLKPSYFSAEDVDDESGAS 1054


>gi|398407171|ref|XP_003855051.1| hypothetical protein MYCGRDRAFT_99211 [Zymoseptoria tritici IPO323]
 gi|339474935|gb|EGP90027.1| hypothetical protein MYCGRDRAFT_99211 [Zymoseptoria tritici IPO323]
          Length = 1790

 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 215/846 (25%), Positives = 359/846 (42%), Gaps = 99/846 (11%)

Query: 21  KASKNQFKNSKKQINDAVEAQDLALPPDDDV-----PVFPRGGGHSLTQRERDEI--HAE 73
           + SKN  K +K + + A        PP   V       FPRGGG  LT  E  +I   AE
Sbjct: 32  RESKNGSKETKPKKSHADTDAGEKRPPAKSVLQQEERAFPRGGGSVLTPLEHKQIKAQAE 91

Query: 74  VDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS------------LFGDGISGKLPR 121
            D  FE          ++  +  E KA++T+ D G+              GD   GK+  
Sbjct: 92  RDVLFE----------QENGEVAEEKADDTLFDEGTSAAKKKKRKDGRKSGDE-PGKVEG 140

Query: 122 YANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPIL---- 171
              +I   + K++  G  + G V  +  +D+ + LP  L G A+    +++L+  +    
Sbjct: 141 SGVRIQGLSYKSLVVGSTVLGRVTGITGRDIALALPNNLTGYAQITAVSESLNARIERLL 200

Query: 172 ------DNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLSLLYK 223
                 D+  +  ED  L  +FHVGQ +  +V     +  + GK+K  I L+L    +  
Sbjct: 201 QDDGKPDDSGDDAEDIDLKQLFHVGQWLRAVVTSTGSESADGGKKKRHIELTLDPGQVNG 260

Query: 224 GLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLL 280
           GL+ +       +   V+S+EDHG ++  GL   S  GF+ +  L     I  +  G ++
Sbjct: 261 GLAEDRFVVNSTIQGSVRSVEDHGIVMDLGLSDASVKGFISKKELGSAYNITQISEGQVM 320

Query: 281 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-----SIDLLVPGMMVSTRVQSILEN 335
             +V       KV+ L  D +  +  +  +   I     ++D   PG  V   V      
Sbjct: 321 LCLVTGKGSNGKVLKLCPDTNKFAVNLPSNKLPIVSEAPTVDAFQPGTAVDILVTDCDGR 380

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV----DPTSRAVGLTL 391
           GV+   +     T D+FH    +   +    +    K  ARI++     D + RA  L  
Sbjct: 381 GVVGKIMGMLNVTADVFH-SGAYAVEDMAEKHKIGSKAKARIIYSLPQDDGSRRAADLD- 438

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRV--DRGLGLLLDIPST-PVSTPAYVTISDVAEE 448
                        + +    + +KVVR+  +RGL L L +P        A+  IS V++ 
Sbjct: 439 -----------QKLTLSATVESAKVVRISAERGLFLTLPMPGNHEQPAAAFAHISQVSDS 487

Query: 449 EVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
            +  +     YK  S  + RI+ +  ++ +    LK S  +       D+  G +VKG V
Sbjct: 488 RIDSISTTGPYKVDSTHKARIIAYNPVDNVYYVSLKKSTLDQAFLRLEDLTVGSIVKGTV 547

Query: 507 IAV------DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS-- 558
             +         G +V+    +  L P  H+S+ ++  P +K++ G  +  RVL V +  
Sbjct: 548 DKLILGGKKGVTGVLVKLSDSISGLVPEMHLSDTQLSHPERKYREGFPIKARVLSVDTDK 607

Query: 559 KRITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + I +T KK+LV++  +  I   Y +    + + G I  +   G  V+FY  V+ + P +
Sbjct: 608 RHIRLTVKKSLVEADDSSLIWKDYDDLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVA 667

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLGSL 672
           E+      +  + + +GQ V+ +I+S  PA+R + ++        +E     + V  G L
Sbjct: 668 EMSETFIEKTENHFRLGQTVRVKILSVNPAAREMKVTCKSGGELTAEQQTAWEEVSGGDL 727

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLD 731
           VSGVV V   + V V  ++ G  KG +  EHL D     A      I+ G     LLVL+
Sbjct: 728 VSGVVSVKGADNVSVD-LSNGL-KGVVKVEHLVDASAAKAESALKRIRVGQTLSNLLVLE 785

Query: 732 --NESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
             + S  + LS K +L+  A+   L            VHG V NI  TG +V F   + G
Sbjct: 786 KLDRSQTVALSNKPALVEDAKNGTLIKSFEDAQEGRKVHGSVRNITPTGVYVEFASGIVG 845

Query: 788 FAPRSK 793
             P+S+
Sbjct: 846 LLPKSQ 851



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 195/426 (45%), Gaps = 49/426 (11%)

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---- 1131
            ++ ++      GRI ++E  D   ++         FK    V  +I+   +  + +    
Sbjct: 940  QVNVRLADNVQGRIDVSEAFDSWKDITNKAAPLEKFKPNDVVEVKILGIHDARNHRFLPI 999

Query: 1132 -----KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1186
                 K  ++ELS K S +   + G + L     V  G     +V   D+    + +S +
Sbjct: 1000 SHRAGKVPVFELSAKRSRI---DAGDESLLSFDTVKKGSSCLAFVNNHDDSCVWVNLSPN 1056

Query: 1187 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            ++ ++ ++D + +  +LQ  + RF IG A+   V +I+     L L  R   +  +   +
Sbjct: 1057 VRGRVALMDLSDDVGQLQNVENRFRIGCALKVTVKAIDLSSNRLDLTAR---EATTSGPL 1113

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
             + +      +  G ++  R++K+      + V+I  +L G V   EL     SD     
Sbjct: 1114 TLQD------LKPGMVLPARVTKV--NERSVFVEIADNLAGPVPLVEL-----SDDYEQV 1160

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
            +  Q      Y++   V+  VL +    +  F   LS+R S           LS+ +   
Sbjct: 1161 NTAQ------YNKNDIVRVCVLGVDLPNKRAF---LSMRPS---------KVLSSSLPVK 1202

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
              H+  +  L    IV+G+VK V  KG F+ L  + DA V +S+LSD Y++  +  F I 
Sbjct: 1203 DPHVNDVSQLKVGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEID 1262

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            +LV GRVL+V+  SK+V ++LK S         + N++++ VG  V+G++++VE +G FI
Sbjct: 1263 QLVKGRVLAVDVSSKQVRLSLKNSHVDKNYTPPL-NINDIEVGMTVVGKVRKVEDFGAFI 1321

Query: 1487 TIENTN 1492
             I+NT 
Sbjct: 1322 DIDNTQ 1327



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 139/319 (43%), Gaps = 36/319 (11%)

Query: 542  KFKVGAEL--VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
            +F++G  L    + + + S R+ +T ++      L +     +    ++    +TK+ + 
Sbjct: 1079 RFRIGCALKVTVKAIDLSSNRLDLTAREATTSGPLTL----QDLKPGMVLPARVTKVNER 1134

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
              FV   + + G  P  EL  D     ++ Y+   +V+  ++     ++R  LS  M+P+
Sbjct: 1135 SVFVEIADNLAGPVPLVELSDDYEQVNTAQYNKNDIVRVCVLGVDLPNKRAFLS--MRPS 1192

Query: 660  RVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            +V    L            +K+G +V G V  V    V V + A+  +   +    L+D 
Sbjct: 1193 KVLSSSLPVKDPHVNDVSQLKVGDIVRGFVKQVADKGVFVTLGAR--TDALVRISDLSD- 1249

Query: 708  LEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 762
             ++    +SV    +E DQL     L +D  S  + LS K S ++     P + + I   
Sbjct: 1250 -QYIKDWQSV----FEIDQLVKGRVLAVDVSSKQVRLSLKNSHVDKNYTPPLNINDIEVG 1304

Query: 763  SVVHGYVCNIIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
              V G V  + + G F+       RL+G   RS+    +  D+   Y  G  V++ +LDV
Sbjct: 1305 MTVVGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVLDV 1364

Query: 820  NSETGRITLSLKQSCCSST 838
            + E  +I+L LK S  ++T
Sbjct: 1365 DVEKRKISLGLKASYFNNT 1383



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 34/220 (15%)

Query: 1260 GDIVGGRISKIL----SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
            G IV G + K++     GV G++V++   + G V    L +  +S P   Y EG      
Sbjct: 540  GSIVKGTVDKLILGGKKGVTGVLVKLSDSISGLVPEMHLSDTQLSHPERKYREG------ 593

Query: 1316 GYDEGQF-VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1374
                  F +K +VL +    R   H+ L+++ SL  + + +SS +  D D          
Sbjct: 594  ------FPIKARVLSVDTDKR---HIRLTVKKSL--VEADDSSLIWKDYD---------- 632

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            DL P M  QG + N+   G  +     + A + ++ +S+ ++E  E  F +G+ V  ++L
Sbjct: 633  DLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVAEMSETFIEKTENHFRLGQTVRVKIL 692

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1474
            SV P ++ ++VT K+    TA Q        +  GD+V G
Sbjct: 693  SVNPAAREMKVTCKSGGELTAEQQ--TAWEEVSGGDLVSG 730



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 32/199 (16%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            +D S +    +V G+V  + + G FV    R       S   D    D    + + Q V+
Sbjct: 1207 NDVSQLKVGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEIDQLVK 1266

Query: 814  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
              +L V+  + ++ LSLK S         +                         +    
Sbjct: 1267 GRVLAVDVSSKQVRLSLKNSHVDKNYTPPLN------------------------INDIE 1302

Query: 874  IGSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE-------SGSVIQAAIL 925
            +G  + GKV +  DFG  +  +     + G     ++A   +E       +G V++A +L
Sbjct: 1303 VGMTVVGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVL 1362

Query: 926  DVAKAERLVDLSLKTVFID 944
            DV   +R + L LK  + +
Sbjct: 1363 DVDVEKRKISLGLKASYFN 1381



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 15/213 (7%)

Query: 630 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNA 684
           Y V    K RI++  P      +S     +    +  +DL  +GS+V G VD  ++    
Sbjct: 498 YKVDSTHKARIIAYNPVDNVYYVSLKKSTLDQAFLRLEDLT-VGSIVKGTVDKLILGGKK 556

Query: 685 VVVYVIAK--GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLS 740
            V  V+ K      G +P  HL+D  L H    +   + G+    ++L +D +  ++ L+
Sbjct: 557 GVTGVLVKLSDSISGLVPEMHLSDTQLSHP---ERKYREGFPIKARVLSVDTDKRHIRLT 613

Query: 741 AKYSLI--NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            K SL+  + +  +  D   + P     G + N++  G  V+F G +  + P ++  +  
Sbjct: 614 VKKSLVEADDSSLIWKDYDDLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVAEMSETF 673

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                  + +GQ+VR  IL VN     + ++ K
Sbjct: 674 IEKTENHFRLGQTVRVKILSVNPAAREMKVTCK 706



 Score = 40.4 bits (93), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 5/166 (3%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K G +V+G V  V   G  V       AL  +  +S+  I      F++   +  RV
Sbjct: 1210 SQLKVGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEIDQLVKGRV 1269

Query: 554  LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--- 608
            L V   SK++ ++ K + V        +  +    +   G + K+E  G F+   N    
Sbjct: 1270 LAVDVSSKQVRLSLKNSHVDKNYTPPLNINDIEVGMTVVGKVRKVEDFGAFIDIDNTQPR 1329

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            + G   RSE+      +  ++Y  G VVK R++      R+I+L  
Sbjct: 1330 LSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVLDVDVEKRKISLGL 1375


>gi|448118427|ref|XP_004203493.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|448120825|ref|XP_004204076.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|359384361|emb|CCE79065.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|359384944|emb|CCE78479.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
          Length = 1712

 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 177/693 (25%), Positives = 322/693 (46%), Gaps = 44/693 (6%)

Query: 175 IEANEDNLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 231
           I  +E   LP++   F +G  +   V + D+++K    ++I LS+   +L + L  E + 
Sbjct: 168 ISTSEKKQLPSLQDLFTLGSWLIAKVYKPDNERK----KRIQLSVEPHVLNRSLEKEDLI 223

Query: 232 EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 291
            G ++   + S+EDHG IL+ GLP+  GF+   ++A +SG D       Q ++ SI    
Sbjct: 224 SGNIMQCSIISVEDHGVILNTGLPNLGGFISNKDIA-SSGRDFDSLHAGQVILCSIINKP 282

Query: 292 KVVYLSSDP-DTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
               +   P D+V+     VT  +   SID + PG +V   V  I +NG++L        
Sbjct: 283 SGRTIGLKPLDSVAGSKNYVTSSIS--SIDAIQPGSLVDALVSEITKNGLVLKVFGMVDA 340

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLL-------HN 398
           T+++ +L   +     K+ Y     + AR+  V P +    L L+  P +         +
Sbjct: 341 TINLANLH-VYDYQELKHKYTVSNTIKARVTAVLPRAGTKRLMLSHLPQITSLSTARNDD 399

Query: 399 RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
             P      G I++ + V+  D    + ++I ++ +    +V+  D      + L   Y 
Sbjct: 400 FNPLEAFPTGYIFEDATVISHDTNY-IYVNIGTSYLQAQVHVSRIDPD----KTLSIDYY 454

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV-KGKVIAV--DSFGAI 515
            GS  + R++G+   E L     +         + SD+  G  + K +V+ +  +S G  
Sbjct: 455 SGSKHKARVVGYNKYENLLVLSFEPKVINAPYLSVSDIPDGTFIEKCEVLKILPNSGGLE 514

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKL 574
           V+      A+ P  HMS+  +V P +KF++G ++  RVL  + K + +T KK+LV     
Sbjct: 515 VKVFDEFNAIVPPEHMSDIRLVYPERKFRIGGKVKSRVLSKRGKNLFITIKKSLVNIEDQ 574

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
            +LS++ +A     T   I K   +G  V F+  ++ F P+SE+      + S    +GQ
Sbjct: 575 EVLSNFDDAKIGFKTPATIEKFVYNGAIVNFFGNLKAFLPKSEISETFVEKASDYLRLGQ 634

Query: 635 VVKCRIMSSIPASRRINLSFM----MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 690
            V  RI+S     +R+ ++      +  ++ S  D +  G  ++    V      V+  +
Sbjct: 635 TVNVRILSVNKEQKRLVVTLKQSVDLSESQKSSLDDIHPGKTITPATVVEKQKESVIVEL 694

Query: 691 AKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLIN 747
           +    +G I + HL+D + E    + + +K   E  Q+LVL  D ++ +++ +AK SLI 
Sbjct: 695 SGSKLRGVIYSGHLSDDNYEQNRAIFNKLKVNDEL-QVLVLEKDLKARSVICTAKKSLIE 753

Query: 748 SAQQ--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
           +A    +P+    I   + ++ G+V ++   G F+ F G+LTG      A D    +L+K
Sbjct: 754 AASNGMIPAYFKDIKVDDRMLRGFVKSVTNMGLFISFAGKLTGLVLAKYATDRPNENLAK 813

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +Y  +SV   ++ V+ E  R  LSLK+   SS
Sbjct: 814 KFYKYKSVSCRVIRVDEENKRFLLSLKKDNNSS 846



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 203/445 (45%), Gaps = 63/445 (14%)

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVT 1118
            Y VG + +A I  I+  +L ++      GR+ +T+  +D S + +     S F     +T
Sbjct: 868  YSVGVVTKAIIKSIRGTQLNVQLSDNLQGRVDVTQCFNDWSEIKDKKQPLSKFAKNTEIT 927

Query: 1119 ARII----AKSNK--PDMKKSFLWELSIKPSMLT-----VSEIGSKLLFEECDVSIGQRV 1167
             ++I    AK++K  P   +    +L ++ SML+      +E    +L    D+  G  V
Sbjct: 928  VKVIGYHDAKNHKFLPITHRKSAKQLILELSMLSREIEKPNEPYRDVLLR--DIPEGSEV 985

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
              +V  +   +  ++++ +L+  + ++D + + S  ++ + +  IG A+      I+ E 
Sbjct: 986  VCFVNNIVKGFVWVSLTPNLRGHISLMDLSDDVSVYEDLENKVPIGMAIKATAKEIDSEH 1045

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L  R         T++   D     +  G  V  RI K+      ++VQ+G  L  
Sbjct: 1046 NSLVLTARK-------NTLNSIKD-----VKVGQKVPARIIKVKETY--VLVQLGDKL-- 1089

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
                  + +  ++D L+ Y     D LS  +   +F    +L +         V +SLR+
Sbjct: 1090 ------IASSFITDALNNYS----DKLSDVFHVNEFACATILAVDE---ANDKVAVSLRN 1136

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
                     +SD         K +   +DL    +V+G+VKN+ + G ++ L R + A V
Sbjct: 1137 QY-------ASD---------KLITSHKDLKQEDVVRGFVKNIANNGVYVSLGRTVHALV 1180

Query: 1407 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1466
             +S+LSD Y++  +K F   + V G+V ++    K + +TLK S+      + +   ++L
Sbjct: 1181 RVSDLSDSYLKDWKKFFKPNQPVIGKVSAINEDGK-ILLTLKESEVY-GKLNVLKKFNDL 1238

Query: 1467 HVGDIVIGQIKRVESYGLFITIENT 1491
             VGDI  G IK+V ++G+F+ ++ T
Sbjct: 1239 KVGDIFEGSIKQVTNFGVFVKLDGT 1263



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 167/376 (44%), Gaps = 50/376 (13%)

Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            F+IG  V +R+++K  K          ++IK S++ + +   ++L    D  IG +    
Sbjct: 542  FRIGGKVKSRVLSKRGKNLF-------ITIKKSLVNIED--QEVLSNFDDAKIGFKTPAT 592

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            + K     A++    +LKA  F+  S    + +++      +G+ V   +LS+NKE+K L
Sbjct: 593  IEKFVYNGAIVNFFGNLKA--FLPKSEISETFVEKASDYLRLGQTVNVRILSVNKEQKRL 650

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQI-GPHLYG 1287
             + L+        ++VD+S     +   IH G  +    + +      ++V++ G  L G
Sbjct: 651  VVTLK--------QSVDLSESQKSSLDDIHPGKTITP-ATVVEKQKESVIVELSGSKLRG 701

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
             ++   L     SD     +   F+ L   DE Q +  +    +R+V  T    L + ++
Sbjct: 702  VIYSGHL-----SDDNYEQNRAIFNKLKVNDELQVLVLEKDLKARSVICTAKKSL-IEAA 755

Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
             +GM      D+  D                + +++G+VK+VT+ G FI  + KL   VL
Sbjct: 756  SNGMIPAYFKDIKVD----------------DRMLRGFVKSVTNMGLFISFAGKLTGLVL 799

Query: 1408 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD--SRTASQSEINN--- 1462
                +D   E+  K+F   K V+ RV+ V+  +KR  ++LK  +  S T +   + N   
Sbjct: 800  AKYATDRPNENLAKKFYKYKSVSCRVIRVDEENKRFLLSLKKDNNSSDTFNDEPLQNPVD 859

Query: 1463 LSNLHVGDIVIGQIKR 1478
             S   +GD  +G + +
Sbjct: 860  KSKAVIGDYSVGVVTK 875



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 5/191 (2%)

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            +A  +    A + L+ +H D+K   VV+G V  + + G  V     V AL  +  +S+  
Sbjct: 1130 VAVSLRNQYASDKLITSHKDLKQEDVVRGFVKNIANNGVYVSLGRTVHALVRVSDLSDSY 1189

Query: 536  IVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
            +    K FK    ++ +V  +    +I +T K++ V  KL +L  + +     I  G I 
Sbjct: 1190 LKDWKKFFKPNQPVIGKVSAINEDGKILLTLKESEVYGKLNVLKKFNDLKVGDIFEGSIK 1249

Query: 595  KIEKHGCFVRFYN--GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
            ++   G FV+     GV G    SE+      + SS++  G  VK +++ +I  S++  L
Sbjct: 1250 QVTNFGVFVKLDGTVGVTGLCHHSEIADKTITDVSSLFGEGDRVKVKVL-AIDESKK-QL 1307

Query: 653  SFMMKPTRVSE 663
            S  MK +  ++
Sbjct: 1308 SLGMKASYFTD 1318


>gi|296412695|ref|XP_002836057.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629859|emb|CAZ80214.1| unnamed protein product [Tuber melanosporum]
          Length = 1070

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 225/906 (24%), Positives = 387/906 (42%), Gaps = 117/906 (12%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAV--EAQDLALPPD---------- 48
           M +  ++ + + +  GP    A+K+Q K      N  +  EA   A  P+          
Sbjct: 1   MGSDLKRKRSQDADPGP----ANKSQTKKLPATANKRLKPEASAAASKPEPAKLSTFRSS 56

Query: 49  -DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            D+   F RGGG  LT  E  +I   A  DA FE  E    K  KKK ++ E K ++T  
Sbjct: 57  KDEEKSFSRGGGSVLTPLEFKQISIDAAKDALFET-ENAKAKWTKKKSRREEPKKDKTSK 115

Query: 106 DLGSLFGD--GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
              S  G+  GI       A  ++ K +  G  + G V+++++ DL + LP  L G    
Sbjct: 116 KDESKKGEQKGIK------AEGLSYKRLLPGTLVLGCVSQISQTDLALSLPNNLTGFV-P 168

Query: 164 ADALDPILDNEIEA------------------------NEDNL-LPTIFHVGQLVSCIVL 198
             ++  +L+   EA                        +ED + L ++F +G  +   V+
Sbjct: 169 LTSISELLNKNFEALVRDSDDDEDEDVEENIETAKSESSEDGVDLKSMFQIGPYLRAYVV 228

Query: 199 ---QLDDDKKEIG----KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
              +  + K   G    K++I LSL   L   GL+   +  G  + A V S+EDHG +++
Sbjct: 229 SSSEPTNSKYSTGSKRFKKRIELSLDPVLTNNGLTTTELVVGCTVQASVTSVEDHGLVMN 288

Query: 252 FGLPS-FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 309
            G+ +   GFL    L +   + D K G ++      +    K+V LS     + +  TK
Sbjct: 289 LGIGNHLKGFLSSKELGKGRSVTDAKEGQVMLCTTIGLSSNGKIVKLSGG---LEQKPTK 345

Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
             K I                     GV    +      +D FH    +   + ++ +  
Sbjct: 346 GGKAI---------------------GVAGKVMGLVDAKMDFFHASG-WEEKDIESKFKV 383

Query: 370 HKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLG 424
            +K+ A ++      R + L++ P++L         P + + +  I + +K + ++  +G
Sbjct: 384 GEKIKAHVIATYSEPRKLALSILPHVLPFTQPIENEPTTILPIATIINTAKALNIEPKIG 443

Query: 425 LLLDIPSTPVSTPAYVTISDVAEE-EVRKLEKK---YKEGSCVRVRILGFRHLEGLATGI 480
           L LD+    V  P +V IS ++ + ++  L      Y+  S   VRI+G+  ++GL    
Sbjct: 444 LFLDVGVPGV--PGFVHISRISSDSKIEALSNDSGLYQTDSVHMVRIIGYNSMDGLYLVS 501

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKP 539
           ++    +       D+K G VVKG +  V   G  IV    G+  +    H+S+ ++  P
Sbjct: 502 MEQKVLDQSFLRVKDIKIGEVVKGTIDRVLHSGRVIVNLAEGITGIVDELHLSDVKLKHP 561

Query: 540 GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            KKF+ G E+  RVL      +++ +  KK +V S   I+SSY +      + G + KI 
Sbjct: 562 EKKFREGVEVKARVLLTDPPKRKVRLILKKAIVNSDAPIISSYKDTNSGTRSVGTLVKIL 621

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
            +G  V+F+  V GF P SE+      +P     VGQ V   ++S  PAS+++ +S    
Sbjct: 622 PNGAIVKFFLDVCGFLPVSEMREAYIQDPHEHSTVGQSVNVHVLSVDPASQKLRVS-CKD 680

Query: 658 PTRVSEDDLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYS--KGTIPTEHLADHLEH 710
           P    E   V L     G +VSG V   + + ++V +   G    +G + T  L D    
Sbjct: 681 PNLFGEAHKVTLAKLPPGDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVTGQLTDGSRD 740

Query: 711 AT--VMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSV 764
            +  V K  ++ G + D LLVL+   E  ++ LS K SL+ +A+   + S    ++   +
Sbjct: 741 KSLGVFKK-LRAGQKLDDLLVLEKHEERRSITLSMKPSLVKAAKGGSMISKFEDVNEGEI 799

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
           V G+V N      FV F G + G   +       ++  +  Y   QS+   ++ ++    
Sbjct: 800 VRGWVRNTTLQSLFVGFAGGIVGVVYKKDRPAEVQSLPNFGYVKNQSITCRVVYIDPSER 859

Query: 825 RITLSL 830
           R  LSL
Sbjct: 860 RFRLSL 865



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 161/792 (20%), Positives = 295/792 (37%), Gaps = 143/792 (18%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGG---------------------VKALCPLPHMS 532
            +D K G V+    I + S G IV+  GG                     V A     H S
Sbjct: 311  TDAKEGQVMLCTTIGLSSNGKIVKLSGGLEQKPTKGGKAIGVAGKVMGLVDAKMDFFHAS 370

Query: 533  EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR------ 586
             +E      KFKVG ++   V+       T +  + L  S L  +  + +  +       
Sbjct: 371  GWEEKDIESKFKVGEKIKAHVIA------TYSEPRKLALSILPHVLPFTQPIENEPTTIL 424

Query: 587  ----LITHGWITKIE-KHGCFVRF-YNGVQGFAPRSELGLDPGCEP----SSMYHVGQVV 636
                +I       IE K G F+     GV GF   S +  D   E     S +Y    V 
Sbjct: 425  PIATIINTAKALNIEPKIGLFLDVGVPGVPGFVHISRISSDSKIEALSNDSGLYQTDSVH 484

Query: 637  KCRIM--SSIPA-------SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 687
              RI+  +S+          + ++ SF+    RV +   +K+G +V G +D V  +  V+
Sbjct: 485  MVRIIGYNSMDGLYLVSMEQKVLDQSFL----RVKD---IKIGEVVKGTIDRVLHSGRVI 537

Query: 688  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 745
              +A+G + G +   HL+D  L+H    +   + G E   ++L+ D     + L  K ++
Sbjct: 538  VNLAEGIT-GIVDELHLSDVKLKHP---EKKFREGVEVKARVLLTDPPKRKVRLILKKAI 593

Query: 746  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            +NS   + S     +  +   G +  I+  G  V+F   + GF P S+  +    D  + 
Sbjct: 594  VNSDAPIISSYKDTNSGTRSVGTLVKILPNGAIVKFFLDVCGFLPVSEMREAYIQDPHEH 653

Query: 806  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
              VGQSV  ++L V+  + ++ +S K          F + H +   K+            
Sbjct: 654  STVGQSVNVHVLSVDPASQKLRVSCKDPNL------FGEAHKVTLAKLPP---------- 697

Query: 866  LKWVEGFIIGSVIEGKVHE--SNDFGVVVSFEEHSDVYGFITHHQLA-GATVESGSVIQA 922
                     G V+ G V E  ++D  V ++      + G +   QL  G+  +S  V + 
Sbjct: 698  ---------GDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVTGQLTDGSRDKSLGVFKK 748

Query: 923  ----------AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
                       +L+  +  R + LS+K   +          +A K        +D+   +
Sbjct: 749  LRAGQKLDDLLVLEKHEERRSITLSMKPSLV----------KAAKGGSMISKFEDVNEGE 798

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 1032
             V   V       L +        + Y        Q  P   ++  QS+   V+ +  S 
Sbjct: 799  IVRGWVRNTTLQSLFVGFAGGIVGVVYKKDRPAEVQSLPNFGYVKNQSITCRVVYIDPSE 858

Query: 1033 TAGRLLL--------LLKAISETETSSSK--------RAKKKSSYDVGSLVQAEITEIKP 1076
               RL L           A++ T   + +        R K    Y  G L +A++  ++ 
Sbjct: 859  RRFRLSLNSVKSGEGEAPAVANTAGDTERLTVNPVDARFKHIDDYTSGRLTKAKVVSVQE 918

Query: 1077 LELRLKFGIGFHGRIHITEVND------DKSNVVENLFSNFKIGQTVTA-------RIIA 1123
             +L +K      GRI ++ V +      DK + + +      +G  +         R +A
Sbjct: 919  TQLNVKLADNVQGRIDVSLVFETWDAIKDKKSPLASFGKGSVLGVKIIGIHDARNHRFLA 978

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
             +++    K+ ++ELS +P  +    I  + + +  D++       ++  +  E A   I
Sbjct: 979  ITHQKSNTKTPIFELSARPGHIKEEGI-ERCITKLEDITPNSTWVAFLNNISEECARANI 1037

Query: 1184 SRHLKAQLFILD 1195
               ++ ++ ILD
Sbjct: 1038 LPGIRGRIRILD 1049


>gi|344303010|gb|EGW33284.1| hypothetical protein SPAPADRAFT_137651 [Spathaspora passalidarum
           NRRL Y-27907]
          Length = 1671

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 196/825 (23%), Positives = 357/825 (43%), Gaps = 76/825 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG  +LT  E  EI  E   D  FE        K      + + K  +      +  
Sbjct: 19  FPRGGATALTPLEVKEISNEATKDVLFEQ-----STKRSSSSAEPQPKRQKKTKKKSTKS 73

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL 171
            +    +        T KN+  G  + G + ++ + D+ + L   L G      ++ P++
Sbjct: 74  TEAEDEEKVETVEIFTFKNLIPGTLVLGQIQKIGKFDITLALGDNLVGYVPIT-SISPLI 132

Query: 172 DNEIEANEDNL--------------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRK 211
              IE  E                       L  IF VG  +   V    D++K    ++
Sbjct: 133 TKTIEELEKEDQSDESDDEQEEEEKSKEFPELSAIFKVGSWLKAKVATQKDERK----KR 188

Query: 212 IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG 271
           I  ++   ++ + +  E    G +L   V S+EDHG I+  G P  +GF+    L  N  
Sbjct: 189 IEFTIEPEVVNELIEDEDFVSGNLLQCSVVSVEDHGIIVDTGKPKISGFISNKELT-NGK 247

Query: 272 ID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
           I+   VKPGL++   + S  + R V    ++  T        +   S+D + PGM+V   
Sbjct: 248 IEIGSVKPGLVILASIVSQPKGRTVTLRPANVTTKKPISVTTIS--SVDAIQPGMIVDAL 305

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSR 385
           +  + +NG+++       G++ + HL+  F     K++Y+   KV AR+L V   +   R
Sbjct: 306 IGEVTKNGLIVKVFGLVDGSISLAHLRE-FSLDKLKHNYSVGSKVKARVLAVLLKNGVKR 364

Query: 386 AVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            + L+L  ++L  +  P          VG   D+ ++V  D     +       +ST  Y
Sbjct: 365 LI-LSLAHHVL--KLEPEETDALEAFPVGHKLDEVEIVGKDDNYMYV------KLST-FY 414

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
             I +   +  + LE  Y  GS  + R++G+  ++ L     ++S         SD+  G
Sbjct: 415 GQIHNSKIDSDKNLEIDYTIGSKHKSRVIGYNSVDDLLIMTFESSLINSEYLNASDIPLG 474

Query: 500 MVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
             +   +++ V  +S G  V+F    +   P   MS+ ++V P +KF+VG ++  RV+G 
Sbjct: 475 TYIPSCEILKVLPESGGIQVKFFDKFEGFVPTNQMSDIKLVYPERKFRVGTKVKGRVIGQ 534

Query: 557 KSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           + K + +T +K LV      ILS + +A     T+  + K   +G  V F+  ++ F P+
Sbjct: 535 QGKTVLITLRKALVNLENDEILSKFEDAKIGFKTNAIVEKFVHNGAIVSFFGKLKAFLPK 594

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-----MMKPTRVSEDDLVKLG 670
           +E+             +GQ+V  RI+     + R+ ++      + +  + +  +LV   
Sbjct: 595 NEISETFVERAQDHLKLGQIVSTRILDINTETERLLVTLKQATDLFQAQKATIAELVPGK 654

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
           S+ +  V     N++++ +  +   +G I    L D + E        ++ G +  ++L+
Sbjct: 655 SIANAFVVEKAKNSILIELENENL-RGVIYDGQLTDGNYEQNRAAVKQLEIGSKL-EVLI 712

Query: 730 LDNE--SSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           LD +  +  ++ + K SLI +  + Q P+    +    +V GY+ ++   G FV F G+L
Sbjct: 713 LDKDLRARTVIATGKRSLIEAVRSNQFPTTFEEVSEGKLVKGYIKSVTNFGLFVSFAGKL 772

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           TG      A  G  +DLSK +Y  QSV   ++ ++ E  R  LSL
Sbjct: 773 TGLVLAKYA--GDVSDLSKKFYKHQSVSCRVIRLDQENKRFLLSL 815



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 253/1057 (23%), Positives = 434/1057 (41%), Gaps = 181/1057 (17%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PGM+V   +  V   G IV+  G V     L H+ EF + K    + VG+++  RVL 
Sbjct: 296  IQPGMIVDALIGEVTKNGLIVKVFGLVDGSISLAHLREFSLDKLKHNYSVGSKVKARVLA 355

Query: 556  VKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGW----ITKIEKHGCFVR--- 604
            V  K      K+ ++     +L    E TD L    + H      I   + +  +V+   
Sbjct: 356  VLLKNGV---KRLILSLAHHVLKLEPEETDALEAFPVGHKLDEVEIVGKDDNYMYVKLST 412

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRV 661
            FY  +      S++  D   E    Y +G   K R++        + ++F   ++    +
Sbjct: 413  FYGQIHN----SKIDSDKNLEID--YTIGSKHKSRVIGYNSVDDLLIMTFESSLINSEYL 466

Query: 662  SEDDLVKLGSLV-SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
            +  D + LG+ + S  +  V P +  + V      +G +PT  ++D          ++ P
Sbjct: 467  NASD-IPLGTYIPSCEILKVLPESGGIQVKFFDKFEGFVPTNQMSDI--------KLVYP 517

Query: 721  GYEFD-----QLLVLDNESSNLLLSAKYSLINSAQ-----QLPSDASHIHPNSVVHGYVC 770
              +F      +  V+  +   +L++ + +L+N        +          N++V  +V 
Sbjct: 518  ERKFRVGTKVKGRVIGQQGKTVLITLRKALVNLENDEILSKFEDAKIGFKTNAIVEKFVH 577

Query: 771  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            N    G  V F G+L  F P+++  +           +GQ V + ILD+N+ET R+ ++L
Sbjct: 578  N----GAIVSFFGKLKAFLPKNEISETFVERAQDHLKLGQIVSTRILDINTETERLLVTL 633

Query: 831  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
            KQ+    TD               + Q+ K   +EL  V G    S+    V E     +
Sbjct: 634  KQA----TD---------------LFQAQKATIAEL--VPG---KSIANAFVVEKAKNSI 669

Query: 891  VVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKT 940
            ++  E + ++ G I   QL     E           GS ++  ILD     R V  + K 
Sbjct: 670  LIELE-NENLRGVIYDGQLTDGNYEQNRAAVKQLEIGSKLEVLILDKDLRARTVIATGKR 728

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV----KENYLVLSLPEYNHS 996
              I+  R   SN+     +   E     G  ++V      V    K   LVL+       
Sbjct: 729  SLIEAVR---SNQFPTTFEEVSEGKLVKGYIKSVTNFGLFVSFAGKLTGLVLA------- 778

Query: 997  IGYA-SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS---- 1051
              YA  VSD +      K+F   QSV   V+ L   +   R LL L    E ++      
Sbjct: 779  -KYAGDVSDLS------KKFYKHQSVSCRVIRLDQENK--RFLLSLNTNGEVDSDEVINP 829

Query: 1052 -SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLF 1108
                 K  + Y  G L +A I  +K  +L ++      GR+ IT+  +    + +     
Sbjct: 830  VDTSKKLLTEYVPGILTKAIIKSVKGTQLNVQLADNLQGRVDITQCFNSWDEIKDKHQPL 889

Query: 1109 SNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLT-VSEIGSKLLFE 1157
            S F  G  +  +II   +  + K          KS + ELSIK +  T  +++  KL   
Sbjct: 890  SQFHKGDILDVKIIGYHDAKNHKFLPVTHRTYGKSTILELSIKDTTETPFTDL--KL--- 944

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
              DV  G  + G+V  + N    ++I+  +K  +  +    + +   +   +  IG A+ 
Sbjct: 945  -SDVKTGTEIFGFVNNIHNGLVWVSITPSVKGHVSFMHLTDDVTVFSDIDNKLPIGCALE 1003

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              V  ++ E  +L +       G + + V   ND     I  G     R+ K+      +
Sbjct: 1004 LKVDEVDNEHHVLVM------SGKNSQGVKTFND-----ITVGKKYPVRVIKVKDAY--V 1050

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
            +V+IGP++    + T+  N   SD L    E  F P        +V   V++I    +  
Sbjct: 1051 LVEIGPNIIASAYITDALN-NYSDKL----EDVFHP------SDYVIASVVDIDTDAK-- 1097

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
              V +SLR+                 D   K +  I DLS   IV+G+VKN+ + G ++ 
Sbjct: 1098 -KVAVSLRND----------------DAVDKTINSIADLSRGDIVKGFVKNIANNGVYVA 1140

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
            L R + A V +++LSD Y++  +K F  G+LV G+V + +    RV +TLK S+      
Sbjct: 1141 LGRSVYALVRITDLSDSYLKDWKKFFKPGQLVLGKVSACKE-EGRVLLTLKESE----VN 1195

Query: 1458 SEINNL---SNLHVGDIVIGQIKRVESYGLFITIENT 1491
             E+N L    +L VGD+  G +KRV  +G+F+ ++ T
Sbjct: 1196 GELNYLKKFEDLEVGDVFEGSVKRVTDFGVFVKLDGT 1232



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 36/198 (18%)

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            +V G+V NI   G +V     +      +   D    D  K +  GQ V   +     E 
Sbjct: 1124 IVKGFVKNIANNGVYVALGRSVYALVRITDLSDSYLKDWKKFFKPGQLVLGKV-SACKEE 1182

Query: 824  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWVEGFIIGSVIEGK 881
            GR+ L+LK+S                            NG  + LK  E   +G V EG 
Sbjct: 1183 GRVLLTLKESEV--------------------------NGELNYLKKFEDLEVGDVFEGS 1216

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLV 934
            V    DFGV V  +   ++ G     ++A   VE+       G  ++  IL V + ++ +
Sbjct: 1217 VKRVTDFGVFVKLDGTVNISGLCHQSEIAENKVENIAGLFGEGDRVKVKILKVNQEKKQL 1276

Query: 935  DLSLKTVFIDRFREANSN 952
             L +K  +     + N +
Sbjct: 1277 SLGMKASYFTTASDVNED 1294



 Score = 43.5 bits (101), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 173/423 (40%), Gaps = 62/423 (14%)

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV---- 919
            +EL   E F+ G++++  V    D G++V       + GFI++ +L    +E GSV    
Sbjct: 199  NELIEDEDFVSGNLLQCSVVSVEDHGIIVD-TGKPKISGFISNKELTNGKIEIGSVKPGL 257

Query: 920  -IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
             I A+I+   K  R V L          R AN   +         +   +     V+A++
Sbjct: 258  VILASIVSQPKG-RTVTL----------RPANVTTKKPISVTTISSVDAIQPGMIVDALI 306

Query: 979  -EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
             E+ K   +V      + SI  A + +++  K  +  +  G  V A V+A+   +   RL
Sbjct: 307  GEVTKNGLIVKVFGLVDGSISLAHLREFSLDKL-KHNYSVGSKVKARVLAVLLKNGVKRL 365

Query: 1038 LLLLK----AISETETSSSKRAKKKSSYDVG-SLVQAEITEIKPLELRLKFGIGFHGRIH 1092
            +L L      +   ET + +      ++ VG  L + EI       + +K    F+G+IH
Sbjct: 366  ILSLAHHVLKLEPEETDALE------AFPVGHKLDEVEIVGKDDNYMYVKLST-FYGQIH 418

Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
             ++++ DK     NL  ++ IG    +R+I  ++  D+         I    L  S+I  
Sbjct: 419  NSKIDSDK-----NLEIDYTIGSKHKSRVIGYNSVDDLLIMTFESSLINSEYLNASDIPL 473

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                  C+          + KV  E   + +    K + F+  +     +L   +R+F +
Sbjct: 474  GTYIPSCE----------ILKVLPESGGIQVKFFDKFEGFVPTNQMSDIKLVYPERKFRV 523

Query: 1213 GKAVTGHVLS-------INKEKKLLRL----VLRPFQDG-ISDKTVDISNDNMQTFIHEG 1260
            G  V G V+        I   K L+ L    +L  F+D  I  KT    N  ++ F+H G
Sbjct: 524  GTKVKGRVIGQQGKTVLITLRKALVNLENDEILSKFEDAKIGFKT----NAIVEKFVHNG 579

Query: 1261 DIV 1263
             IV
Sbjct: 580  AIV 582


>gi|391866697|gb|EIT75965.1| rRNA processing protein [Aspergillus oryzae 3.042]
          Length = 1827

 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 210/862 (24%), Positives = 369/862 (42%), Gaps = 88/862 (10%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           + A  RK QKK         K   +    +K       +A +L +  DD+ P FPRGGG 
Sbjct: 26  VGAEERKDQKK--------QKTGASGEGKTKPDAGSGPKASELTVLRDDE-PSFPRGGGS 76

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL---------- 110
            LT  ER +I  +   +    E+   K + K  +  E    E VDD  +           
Sbjct: 77  VLTPLERKQIQIQATKDV-LFEQKATKDSSKNDEHDEDAEMEDVDDTTATATKKSRKRKT 135

Query: 111 ----FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
                 D    K       +  K +  G  + G V+ ++  D+ + LP  L G   L   
Sbjct: 136 KSKKSADEAQDKQGVRIEGLNFKRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAV 195

Query: 164 ADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDD---DKKE 206
           +  L+  ++N +  +E+                L   F++GQ +   V+ + +   D   
Sbjct: 196 SKRLEEKIENLLNEDENAEEDDDDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASS 255

Query: 207 IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRN 264
             +++I L++       GL    + +   + A V S+EDHG ++  G+      GF+ + 
Sbjct: 256 KSRKRIELTVDPRQANFGLLKSDLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKK 315

Query: 265 NLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLV 320
            +   +    +K G +   +V   +    V+ LS++  + S  + K        +I+  +
Sbjct: 316 EIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFL 374

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G     +     TVD+          +  N Y    KV  R++  
Sbjct: 375 PGTAAEIFLTEVTSSGATGKIMGMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLIST 434

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG +L  ++       + P S      +  I  ++KV++VD GLG+ + I S
Sbjct: 435 FPASDPYKVGFSLLDHVCKFTSETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGS 494

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +Y   +  S    R++G+  L+ L     + S  + 
Sbjct: 495 T--KHVGFVHVSKLADGQVESISAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQ 552

Query: 489 LVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
                 DV  G VVKGK+    I      G IV    G+  L P  H ++  +  P KKF
Sbjct: 553 PFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKF 612

Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           + G  +  R+L V  + ++I +T KK+L+ S+ AI   Y        + G I  ++ HG 
Sbjct: 613 REGMTVSARILSVNPEKRQIRLTLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGA 672

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
            V+FY  V+GF P SE+      +PS  + +GQVV    +S   +  ++ +S    P+  
Sbjct: 673 VVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTF 731

Query: 662 SED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATV 713
           +E      + +  G LV+G V   + + +++ +   G     +  +H+ D     + +T+
Sbjct: 732 TETYKKAFESIHPGLLVTGTVFEKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTL 790

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
            K  I+ G + ++LLVLD + +  L+  S + SL  +A+Q  +P+    +   + V G+V
Sbjct: 791 SK--IRVGQKLNELLVLDIQRTRRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFV 848

Query: 770 CNIIETGCFVRFLGRLTGFAPR 791
            NI  TG FV FLG + G  P+
Sbjct: 849 RNITMTGVFVEFLGGVIGLVPK 870



 Score =  120 bits (300), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 215/444 (48%), Gaps = 51/444 (11%)

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQT 1116
            S +  G + + +I  +K  ++ ++      GRI ++EV D   ++ +       F+  Q 
Sbjct: 949  SDFSFGRVTKCKIVSVKATQINVQLADNIQGRIDVSEVFDSWEDIKDRKQPLRFFRPKQL 1008

Query: 1117 VTARII----AKSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
            ++ARI+    A+S+K         K  ++ELS+KPS L  ++    L      V +G   
Sbjct: 1009 ISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAAD---PLPLNLEQVQVGSSW 1065

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
             G++  + +    + +S +++ +L ++D++ + S L + ++ F IG A+  +V +++ EK
Sbjct: 1066 LGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSAVDIEK 1125

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L  +   + +S   + +           G I+ GR++K+      +++Q+   + G
Sbjct: 1126 GRLDLSAKKGSETLSLDDITV-----------GMILPGRVTKVTER--QVIMQLTDTIVG 1172

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
             V   +L +          D  + +P + Y + + ++  V+ + +  +    + LSLR S
Sbjct: 1173 AVDMIDLTD----------DYSKANP-TIYHKNEVLRACVISVDKANK---KISLSLRPS 1218

Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
                       LS+ +      +  +E +  N +V+G+V+ V   G F+ L   + A V 
Sbjct: 1219 ---------KVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVR 1269

Query: 1408 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1467
            +S+LSD Y++  +  F + +LV GRV  V+P   R+++ LK S      ++ +  L +L 
Sbjct: 1270 VSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPV-KLHDLK 1328

Query: 1468 VGDIVIGQIKRVESYGLFITIENT 1491
             G IV G+I++VE +G FI ++ +
Sbjct: 1329 PGQIVTGKIRKVEEFGAFIVVDGS 1352



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 179/407 (43%), Gaps = 47/407 (11%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                 +Q KV  V RG        GL + +        AYV +SD+++  +++ +  ++ 
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGH---GVTAYVRVSDLSDSYLKEWKDSFQV 1287

Query: 460  GSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FGA 
Sbjct: 1288 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFGAF 1346

Query: 516  VQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1347 IVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1393



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 541  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 595
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 596  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 656  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 704  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 817  LDVNSETGRITLSLKQSCCSSTD 839
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 102/518 (19%), Positives = 202/518 (38%), Gaps = 94/518 (18%)

Query: 484  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK---- 538
            +A +  V + SD   G V K K+++V +    VQ    ++    +  +   +E +K    
Sbjct: 939  NAIDDSVNSMSDFSFGRVTKCKIVSVKATQINVQLADNIQGRIDVSEVFDSWEDIKDRKQ 998

Query: 539  PGKKFKVGAELVFRVLGVKSKR----ITVTHKK-TLVKSKLAILSSYAEATDRLITH--- 590
            P + F+    +  R+LGV   R    + ++H+       +L++  S+ +A D L  +   
Sbjct: 999  PLRFFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQ 1058

Query: 591  --------GWITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMYHVGQVVKC 638
                    G+I  I  +  +V     V+G         +L L    E    + +G  ++ 
Sbjct: 1059 VQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVE--KHFPIGSALRV 1116

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--------- 689
             + +      R++LS       +S DD+  +G ++ G V  VT   V++ +         
Sbjct: 1117 NVSAVDIEKGRLDLSAKKGSETLSLDDIT-VGMILPGRVTKVTERQVIMQLTDTIVGAVD 1175

Query: 690  ---IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
               +   YSK   PT +  + +  A V+               +D  +  + LS + S +
Sbjct: 1176 MIDLTDDYSKAN-PTIYHKNEVLRACVIS--------------VDKANKKISLSLRPSKV 1220

Query: 747  NSAQ---QLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
             S+    Q P   S   +  N VV G+V  + + G FV     +T +   S   D    +
Sbjct: 1221 LSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSYLKE 1280

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
               ++ V Q V+  +  V+ E GR+ + LK+S       + ++ H L             
Sbjct: 1281 WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKP----------- 1329

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
                         G ++ GK+ +  +FG  +  +  +++ G     ++A   V+      
Sbjct: 1330 -------------GQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVY 1376

Query: 917  --GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
              G  ++A IL + + +  +   LK  +   F++ + N
Sbjct: 1377 DEGDAVKAKILKIDRKQGKISFGLKASY---FKDEDEN 1411



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1054 LNLEQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH------ 1107

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + 
Sbjct: 1108 --FPIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVT 1158

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  
Sbjct: 1159 ERQVIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLR 1216

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L ++
Sbjct: 1217 PSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDS 1276

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I   
Sbjct: 1277 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-T 1334

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             K+ +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     
Sbjct: 1335 GKIRKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRK 1392

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1393 QGKISFGLKASYFK 1406



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 131/296 (44%), Gaps = 49/296 (16%)

Query: 1051 SSKRAKKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
            S+K+  +  S D   VG ++   +T++   ++ ++      G + + ++ DD S     +
Sbjct: 1131 SAKKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTI 1190

Query: 1108 FSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS--- 1162
            +      + + A +I+  K+NK          LS++PS +    + S L  ++ +++   
Sbjct: 1191 YHK---NEVLRACVISVDKANKK-------ISLSLRPSKV----LSSSLPVQDPEITSME 1236

Query: 1163 ---IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
               +   V G+V KV +    +T+   + A + + D     S L+E++  F + + V G 
Sbjct: 1237 QVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSD--LSDSYLKEWKDSFQVDQLVKGR 1294

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGG 1276
            V  ++ E+  L++ L+        ++V   N      +H+   G IV G+I K+      
Sbjct: 1295 VTVVDPEQGRLQICLK--------ESVLDPNYKAPVKLHDLKPGQIVTGKIRKVEEFGAF 1346

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            +VV    ++ G  H +E+    V D  + YDEG             VK K+L+I R
Sbjct: 1347 IVVDGSANISGLCHRSEMAENRVDDARTVYDEGDA-----------VKAKILKIDR 1391


>gi|307211267|gb|EFN87453.1| Protein RRP5-like protein [Harpegnathos saltator]
          Length = 1385

 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 155/609 (25%), Positives = 286/609 (46%), Gaps = 43/609 (7%)

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--------NEIEANEDNL 182
           I  GM +   ++E+ E +L+I +PGGL G  +  D  +P  D         +++++E   
Sbjct: 10  ICEGMIILCRISEITEYELIISIPGGLLGCVKLTDLSEPYTDLLQDIIHTKDVQSDEFKS 69

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
           L  ++++G  V C V ++D D    GK    LSL   L+ + ++   +  G  +   VKS
Sbjct: 70  LSELYNLGDYVVCYVKKIDSD----GKWLYNLSLEPQLINQNVNNTNLVTGTKIVCTVKS 125

Query: 243 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV--VYLSSDP 300
           IEDHGY++  G+ +   FL    ++E       PG  +  V++ I    +V  + LS+  
Sbjct: 126 IEDHGYVIDTGIANVRAFLASKYVSEEK--KYFPGNQIMCVIKEIKTVDQVSILTLSAKR 183

Query: 301 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
            TV+K  T D++  S+D L+PG  +S R+   L NG+ ++F     G ++  +L +  P 
Sbjct: 184 KTVNKVSTHDIE--SLDALMPGTKLSLRITRTLSNGLQVTFGKNNVGYLNRIYLDS--PL 239

Query: 361 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
           + + ND     +V   +L++ PT +    +L      + +    + +G +  ++KV+  +
Sbjct: 240 STYVND----TEVTGTLLYIMPTVKFAYFSLPT----DASDEDSLPIGGVIRKAKVLYRE 291

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
              G++  +  + +     +  +DV    + K+   ++ GS  + +++ +  +E L    
Sbjct: 292 SN-GIIFKLTKSNLRGFVSLHRTDVP---ITKISTVFQPGSVHKCKMISYNWMEHLYVCS 347

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKP 539
           ++    E   ++ +D++ G  V  K+  VD+    VQ   G +       H+S+  +   
Sbjct: 348 MEREILEQKYYSLTDLQTGDTVTVKLTKVDTKSGFVQVQVGKICGFVGPEHVSDSGLSGL 407

Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            K  K G  +  RVL V +  + +  T K++L+KSKL +L    EA      HG I KI 
Sbjct: 408 NK-LKDGDSVEARVLNVNTDKRNVRFTLKQSLIKSKLPVLQDICEARCGQEYHGTIIKIN 466

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH-VGQVVKCRIMSSIPASRRINLSFMM 656
           K+G  VRFY  V+G+ PRS   LD      +  H +GQ V   I S      ++ L  + 
Sbjct: 467 KYGLLVRFYGDVKGWVPRS--VLDSNTSDMNWNHTIGQTVTVLIDSIEKEEGKMKLRIIT 524

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI----AKGYSKGTIPTEHLADHLEHAT 712
              +  +   +K+G L+ G V   +   + + +     ++G   G +P  H++  LE   
Sbjct: 525 GEQKQQQSHNMKVGELIEGTVVESSLEGIHLRICKTNDSEGVVSGFLPAGHMSPCLEIGA 584

Query: 713 VMKSVIKPG 721
           ++ S   PG
Sbjct: 585 LLASKCTPG 593



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 25/173 (14%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           ++L ++ +  N+  + K SLI S   +  D          HG +  I + G  VRF G +
Sbjct: 419 RVLNVNTDKRNVRFTLKQSLIKSKLPVLQDICEARCGQEYHGTIIKINKYGLLVRFYGDV 478

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G+ PRS  +D   +D++  + +GQ+V   I  +  E G++ L +               
Sbjct: 479 KGWVPRS-VLDSNTSDMNWNHTIGQTVTVLIDSIEKEEGKMKLRIITG------------ 525

Query: 846 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG---KVHESNDF-GVVVSF 894
               E+K    Q   HN    + +EG ++ S +EG   ++ ++ND  GVV  F
Sbjct: 526 ----EQK----QQQSHNMKVGELIEGTVVESSLEGIHLRICKTNDSEGVVSGF 570


>gi|385305108|gb|EIF49102.1| part of small ribosomal subunit processosome (contains u3 snorna)
           [Dekkera bruxellensis AWRI1499]
          Length = 1300

 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 215/869 (24%), Positives = 368/869 (42%), Gaps = 125/869 (14%)

Query: 54  FPRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG   LT  E  +I   A+ D  FE      HK+++K KK   +   +TVD+     
Sbjct: 33  FPRGGESFLTPLEIKKISNQAKSDVLFEQA----HKESRKSKKNGGKSHPKTVDEEXQ-- 86

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LA 161
                 +  +   +++ K +  G  + G VA+V   +L +     L+G          L+
Sbjct: 87  ------EKXQKVEELSFKILQPGSYVLGKVAKVTNIELTLSXXDNLQGYVPITNVSKELS 140

Query: 162 RAADALDP----------------ILDNEIEANEDNL--------------------LPT 185
           +  DA +                   + E E N D                      L T
Sbjct: 141 KQLDAYEEQEGSEDEDXDEDMSSDDDEGEAEDNGDEQDRITIASKAKSXSSSAKFPNLST 200

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
            F VGQ +   V++   +  + GK++  LS     + KGL  +  +    + A ++S+ED
Sbjct: 201 RFSVGQYLRAYVVE---NTSDTGKKRFELSXEPENVNKGLKKDDFEPNTYVQASIRSVED 257

Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGIDVKP----GLLLQGVVRSIDRTRKVVYLSSD-- 299
           HG IL  G+    GFL + + A   GID+       + L  V +   RT ++   S++  
Sbjct: 258 HGAILDLGMHDMNGFLSKKD-ATKGGIDLASLEVGSVHLLTVKKRSGRTLQLTIPSNNVE 316

Query: 300 ----PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
               P +VS          +ID ++PG +V   +  ++  G+++       G++ + H+ 
Sbjct: 317 KEQIPSSVS----------TIDAILPGSLVDCTITDVVSZGLIVKAFGLANGSISLTHI- 365

Query: 356 NTFPTTNWKNDYNQHKKVNARIL--FVDPTSRAVGLTLNPYLLH----------NRAPPS 403
             + ++  ++ +   + V AR+   ++    R V L+L P++++            AP  
Sbjct: 366 GKYNSSELEDTFKVGESVRARVYASYIQDGLRNVQLSLLPHIVNLKKLAYDPKDESAPLV 425

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPS-TPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
              +G I+D+  +   D    L  D+ S T V       +S  A+     L+  +K GS 
Sbjct: 426 AFPIGHIFDEVTIQGCDSNY-LFADLGSRTAVGQIHKSRVSKGAD-----LDTDFKTGST 479

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA-VDSFGAIVQFPGG 521
            R R+LG+   + +    +     +       D+  G  VK KV   V   G  V     
Sbjct: 480 HRARVLGYSLFDNVYILTMDEEKIDQKYLRMEDIPAGQYVKCKVDKIVPGKGIQVNLEDT 539

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR--ITVTHKKTLVKSKLA-I 576
            +   P  H+S+  ++ P +KFK+G  +  RVL V   S R  I +T K+TLV +  + I
Sbjct: 540 FEGFVPDVHISDVHLLYPQRKFKIGRXVKGRVLRVSXNSTRPTIYITLKRTLVSADDSEI 599

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            SS+ EAT        + +    GC V F+  ++GF P SE+      +P     +GQ V
Sbjct: 600 XSSFDEATVGKXALATVERFYPGGCLVSFFGFLRGFLPNSEISETFVSKPXDFLKLGQTV 659

Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV------VVYVI 690
           + RI++      R+ +S  +  T +SE     +  +V G   +V  N V      ++  +
Sbjct: 660 RVRIINVEKEKNRMKVSMRVAET-LSEKQTEAMEXIVPGKT-IVECNIVEKNRNSLIAEL 717

Query: 691 AKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLIN 747
           A    +G IP   L+D  + E  +++K     G     L++    +   + L+ K SL+ 
Sbjct: 718 ADSNLRGVIPCGQLSDKTYDECRSLLKKT-XVGSXVKALVISKVPNGRFVDLTLKPSLMK 776

Query: 748 SAQQ--LPSDASHIHPNSV-VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            A    LPSD S I  +S  +HG+V N+   G FV F  +LTG              L K
Sbjct: 777 DAANGVLPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTGLILPRYLNSNDVEYLEK 836

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQS 833
            ++V QS+   ++ ++    R  LS+K+S
Sbjct: 837 KFFVNQSISCRVVKMDDANXRFLLSMKES 865



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 166/746 (22%), Positives = 313/746 (41%), Gaps = 119/746 (15%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC V F G L GF P S+  +   +       +GQ+VR  I++V  E  R+ +S++    
Sbjct: 623  GCLVSFFGFLRGFLPNSEISETFVSKPXDFLKLGQTVRVRIINVEKEKNRMKVSMR---- 678

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                             +A   S K   +    V G    +++E  + E N   ++    
Sbjct: 679  -----------------VAETLSEKQTEAMEXIVPG---KTIVECNIVEKNRNSLIAELA 718

Query: 896  EHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDR 945
            + S++ G I   QL+  T +           GS ++A ++      R VDL+LK   +  
Sbjct: 719  D-SNLRGVIPCGQLSDKTYDECRSLLKKTXVGSXVKALVISKVPNGRFVDLTLKPSLM-- 775

Query: 946  FREANSNRQAQKKKRKREASKDLG--VHQTVNAIVEIVKENYLV-LSLPEYNHSIGYASV 1002
             ++A +            +SK+L   V       V +   N L  L LP Y +S      
Sbjct: 776  -KDAANGVLPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTGLILPRYLNS------ 828

Query: 1003 SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-----AISETETSSSKRAKK 1057
               N  ++ +K+F   QS+   V+ +  ++   R LL +K      I        K  KK
Sbjct: 829  ---NDVEYLEKKFFVNQSISCRVVKMDDANX--RFLLSMKESKGGVIEPXNNPVDKHIKK 883

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQ 1115
             + Y  G + +A +  +K   L ++      GRI +T + D   ++ +  N  S FK G+
Sbjct: 884  LNEYIPGRITRAVVKSVKLAYLIVRLADNQLGRIDVTNLFDKFEDIKDPKNPTSQFKEGE 943

Query: 1116 TVTARIIAKSNKPDMKKSFLWE-----------LSIKPSMLTVSEIGSKLLFEEC-DVSI 1163
             +  ++I   +  +   ++L E           LS +   +   +   +L      D  I
Sbjct: 944  ILKVKVIGYFDSRN--HTYLTENHRRFDESVIGLSARKVDIDTGKNTERLNLPTIEDAKI 1001

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  + G+V         ++++   K ++  ++ + + S L + ++   IG A+   ++ +
Sbjct: 1002 GDEILGFVNNFSIGAVWISMAXKYKGRVSFMNLSSDISVLSDVEKVHPIGSALKLKIVDV 1061

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
             K+   + L       G +D    I +      +H GD V  R+ K+      +++++G 
Sbjct: 1062 XKQYSTVEL------SGRADYITSIDS------VHVGDRVPARVVKVYESY--VLLELGD 1107

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
            H+    + TE         L  YD+ + + +  Y +      +VLE+ +  +    +E+S
Sbjct: 1108 HVDAAAYITE--------ALDDYDQ-KLEEV--YAQNDVXAARVLEVDKPSK---RIEVS 1153

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
            L+S      S +S+D                DL    IV+G+V  + + G  + LS+ + 
Sbjct: 1154 LQSDTAKDKSIDSAD----------------DLKVGDIVRGFVNRINNGGLLVXLSKDVY 1197

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
            A V ++NLSD Y++  +  F + + V G+V+  + L K + ++LK SD  +     +   
Sbjct: 1198 AFVKVANLSDSYLKDWKPFFKLYQPVTGKVVRADGLGK-IMLSLKESDI-SGKAHLLKRF 1255

Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIE 1489
             +L VG+I  G +K V  YG+F+ ++
Sbjct: 1256 EDLKVGEIYDGVVKSVVEYGVFVKLD 1281



 Score = 47.0 bits (110), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 168/379 (44%), Gaps = 56/379 (14%)

Query: 1111 FKIGQTVTARII---AKSNKPDMKKSFLWELSIKPSMLTV--SEIGSKLLFEECDVSIGQ 1165
            FKIG+ V  R++     S +P +       +++K ++++   SEI S   F+E   ++G+
Sbjct: 561  FKIGRXVKGRVLRVSXNSTRPTIY------ITLKRTLVSADDSEIXSS--FDEA--TVGK 610

Query: 1166 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
                 V +      L++    L+   F+ +S    + + +      +G+ V   ++++ K
Sbjct: 611  XALATVERFYPGGCLVSFFGFLRG--FLPNSEISETFVSKPXDFLKLGQTVRVRIINVEK 668

Query: 1226 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG-PH 1284
            EK  +++ +R     +++   +   + M+  +    IV   I  +      L+ ++   +
Sbjct: 669  EKNRMKVSMR-----VAETLSEKQTEAMEXIVPGKTIVECNI--VEKNRNSLIAELADSN 721

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            L G +   +L +         YDE +   L     G  VK   L IS+   G F V+L+L
Sbjct: 722  LRGVIPCGQLSD-------KTYDECR-SLLKKTXVGSXVKA--LVISKVPNGRF-VDLTL 770

Query: 1345 RSSL--DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
            + SL  D  +    SD S D+    K L             G+VKNVT  G F+  + +L
Sbjct: 771  KPSLMKDAANGVLPSDYS-DITMSSKEL------------HGFVKNVTRYGVFVSFANQL 817

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1462
               +L   L+   VE  EK+F + + ++ RV+ ++  + R  +++K  +S+       NN
Sbjct: 818  TGLILPRYLNSNDVEYLEKKFFVNQSISCRVVKMDDANXRFLLSMK--ESKGGVIEPXNN 875

Query: 1463 LSNLHV---GDIVIGQIKR 1478
              + H+    + + G+I R
Sbjct: 876  PVDKHIKKLNEYIPGRITR 894


>gi|83770281|dbj|BAE60414.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1827

 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 210/862 (24%), Positives = 369/862 (42%), Gaps = 88/862 (10%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           + A  RK QKK         K   +    +K       +A +L +  DD+ P FPRGGG 
Sbjct: 26  VGAEERKDQKK--------QKTGASGEGKTKPDAGSGPKASELTVLRDDE-PSFPRGGGS 76

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL---------- 110
            LT  ER +I  +   +    E+   K + K  +  E    E VDD  +           
Sbjct: 77  VLTPLERKQIQIQATKDV-LFEQKATKGSSKNDEHDEDAEMEDVDDTTATATKKSRKRKT 135

Query: 111 ----FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
                 D    K       +  K +  G  + G V+ ++  D+ + LP  L G   L   
Sbjct: 136 KSKKSADEAQDKQGVRIEGLNFKRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAV 195

Query: 164 ADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDD---DKKE 206
           +  L+  ++N +  +E+                L   F++GQ +   V+ + +   D   
Sbjct: 196 SKRLEEKIENLLNEDENAEEDDDDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASS 255

Query: 207 IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRN 264
             +++I L++       GL    + +   + A V S+EDHG ++  G+      GF+ + 
Sbjct: 256 KSRKRIELTVDPRQANFGLLKSDLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKK 315

Query: 265 NLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLV 320
            +   +    +K G +   +V   +    V+ LS++  + S  + K        +I+  +
Sbjct: 316 EIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFL 374

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G     +     TVD+          +  N Y    KV  R++  
Sbjct: 375 PGTAAEILLTEVTSSGATGKIMGMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLIST 434

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG +L  ++       + P S      +  I  ++KV++VD GLG+ + I S
Sbjct: 435 FPASDPYKVGFSLLDHVCKFTSETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGS 494

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +Y   +  S    R++G+  L+ L     + S  + 
Sbjct: 495 T--KHVGFVHVSKLADGQVESISAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQ 552

Query: 489 LVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
                 DV  G VVKGK+    I      G IV    G+  L P  H ++  +  P KKF
Sbjct: 553 PFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKF 612

Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           + G  +  R+L V  + ++I +T KK+L+ S+ AI   Y        + G I  ++ HG 
Sbjct: 613 REGMTVSARILSVNPEKRQIRLTLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGA 672

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
            V+FY  V+GF P SE+      +PS  + +GQVV    +S   +  ++ +S    P+  
Sbjct: 673 VVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTF 731

Query: 662 SED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATV 713
           +E      + +  G LV+G V   + + +++ +   G     +  +H+ D     + +T+
Sbjct: 732 TETYKKAFESIHPGLLVTGTVFEKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTL 790

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
            K  I+ G + ++LLVLD + +  L+  S + SL  +A+Q  +P+    +   + V G+V
Sbjct: 791 SK--IRVGQKLNELLVLDIQRTRRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFV 848

Query: 770 CNIIETGCFVRFLGRLTGFAPR 791
            NI  TG FV FLG + G  P+
Sbjct: 849 RNITMTGVFVEFLGGVIGLVPK 870



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 215/444 (48%), Gaps = 51/444 (11%)

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQT 1116
            S +  G + + +I  +K  ++ ++      GRI ++EV D   ++ +       F+  Q 
Sbjct: 949  SDFSFGRVTKCKIVSVKATQINVQLADNIQGRIDVSEVFDSWEDIKDRKQPLRFFRPKQL 1008

Query: 1117 VTARII----AKSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
            ++ARI+    A+S+K         K  ++ELS+KPS L  ++    L      V +G   
Sbjct: 1009 ISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAAD---PLPLNLEQVQVGSSW 1065

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
             G++  + +    + +S +++ +L ++D++ + S L + ++ F IG A+  +V +++ EK
Sbjct: 1066 LGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSAVDIEK 1125

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L  +   + +S   + +           G I+ GR++K+      +++Q+   + G
Sbjct: 1126 GRLDLSAKKGSETLSLDDITV-----------GMILPGRVTKVTER--QVIMQLTDTIVG 1172

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
             V   +L +          D  + +P + Y + + ++  V+ + +  +    + LSLR S
Sbjct: 1173 AVDMIDLTD----------DYSKANP-TIYHKNEVLRACVISVDKANK---KISLSLRPS 1218

Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
                       LS+ +      +  +E +  N +V+G+V+ V   G F+ L   + A V 
Sbjct: 1219 ---------KVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVR 1269

Query: 1408 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1467
            +S+LSD Y++  +  F + +LV GRV  V+P   R+++ LK S      ++ +  L +L 
Sbjct: 1270 VSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPV-KLHDLK 1328

Query: 1468 VGDIVIGQIKRVESYGLFITIENT 1491
             G IV G+I++VE +G FI ++ +
Sbjct: 1329 PGQIVTGKIRKVEEFGAFIVVDGS 1352



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 179/407 (43%), Gaps = 47/407 (11%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                 +Q KV  V RG        GL + +        AYV +SD+++  +++ +  ++ 
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGH---GVTAYVRVSDLSDSYLKEWKDSFQV 1287

Query: 460  GSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FGA 
Sbjct: 1288 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFGAF 1346

Query: 516  VQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1347 IVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1393



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 541  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 595
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 596  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 656  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 704  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 817  LDVNSETGRITLSLKQSCCSSTD 839
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 102/518 (19%), Positives = 202/518 (38%), Gaps = 94/518 (18%)

Query: 484  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK---- 538
            +A +  V + SD   G V K K+++V +    VQ    ++    +  +   +E +K    
Sbjct: 939  NAIDDSVNSMSDFSFGRVTKCKIVSVKATQINVQLADNIQGRIDVSEVFDSWEDIKDRKQ 998

Query: 539  PGKKFKVGAELVFRVLGVKSKR----ITVTHKK-TLVKSKLAILSSYAEATDRLITH--- 590
            P + F+    +  R+LGV   R    + ++H+       +L++  S+ +A D L  +   
Sbjct: 999  PLRFFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQ 1058

Query: 591  --------GWITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMYHVGQVVKC 638
                    G+I  I  +  +V     V+G         +L L    E    + +G  ++ 
Sbjct: 1059 VQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVE--KHFPIGSALRV 1116

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--------- 689
             + +      R++LS       +S DD+  +G ++ G V  VT   V++ +         
Sbjct: 1117 NVSAVDIEKGRLDLSAKKGSETLSLDDIT-VGMILPGRVTKVTERQVIMQLTDTIVGAVD 1175

Query: 690  ---IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
               +   YSK   PT +  + +  A V+               +D  +  + LS + S +
Sbjct: 1176 MIDLTDDYSKAN-PTIYHKNEVLRACVIS--------------VDKANKKISLSLRPSKV 1220

Query: 747  NSAQ---QLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
             S+    Q P   S   +  N VV G+V  + + G FV     +T +   S   D    +
Sbjct: 1221 LSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSYLKE 1280

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
               ++ V Q V+  +  V+ E GR+ + LK+S       + ++ H L             
Sbjct: 1281 WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKP----------- 1329

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
                         G ++ GK+ +  +FG  +  +  +++ G     ++A   V+      
Sbjct: 1330 -------------GQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVY 1376

Query: 917  --GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
              G  ++A IL + + +  +   LK  +   F++ + N
Sbjct: 1377 DEGDAVKAKILKIDRKQGKISFGLKASY---FKDEDEN 1411



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1054 LNLEQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH------ 1107

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + 
Sbjct: 1108 --FPIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVT 1158

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  
Sbjct: 1159 ERQVIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLR 1216

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L ++
Sbjct: 1217 PSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDS 1276

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I   
Sbjct: 1277 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-T 1334

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             K+ +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     
Sbjct: 1335 GKIRKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRK 1392

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1393 QGKISFGLKASYFK 1406



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 131/296 (44%), Gaps = 49/296 (16%)

Query: 1051 SSKRAKKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
            S+K+  +  S D   VG ++   +T++   ++ ++      G + + ++ DD S     +
Sbjct: 1131 SAKKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTI 1190

Query: 1108 FSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS--- 1162
            +      + + A +I+  K+NK          LS++PS +    + S L  ++ +++   
Sbjct: 1191 YHK---NEVLRACVISVDKANKK-------ISLSLRPSKV----LSSSLPVQDPEITSME 1236

Query: 1163 ---IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
               +   V G+V KV +    +T+   + A + + D     S L+E++  F + + V G 
Sbjct: 1237 QVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSD--LSDSYLKEWKDSFQVDQLVKGR 1294

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGG 1276
            V  ++ E+  L++ L+        ++V   N      +H+   G IV G+I K+      
Sbjct: 1295 VTVVDPEQGRLQICLK--------ESVLDPNYKAPVKLHDLKPGQIVTGKIRKVEEFGAF 1346

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            +VV    ++ G  H +E+    V D  + YDEG             VK K+L+I R
Sbjct: 1347 IVVDGSANISGLCHRSEMAENRVDDARTVYDEGDA-----------VKAKILKIDR 1391


>gi|238488517|ref|XP_002375496.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus
           NRRL3357]
 gi|220697884|gb|EED54224.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus
           NRRL3357]
          Length = 1827

 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 210/862 (24%), Positives = 369/862 (42%), Gaps = 88/862 (10%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           + A  RK QKK         K   +    +K       +A +L +  DD+ P FPRGGG 
Sbjct: 26  VGAEERKDQKK--------QKTGASGEGKTKPDAGSGPKASELTVLRDDE-PSFPRGGGS 76

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL---------- 110
            LT  ER +I  +   +    E+   K + K  +  E    E VDD  +           
Sbjct: 77  VLTPLERKQIQIQATKDV-LFEQKATKGSSKNDEHDEDAEMEDVDDTTATATKKSRKRKT 135

Query: 111 ----FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
                 D    K       +  K +  G  + G V+ ++  D+ + LP  L G   L   
Sbjct: 136 KSKKSADEAQDKQGVRIEGLNFKRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAV 195

Query: 164 ADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDD---DKKE 206
           +  L+  ++N +  +E+                L   F++GQ +   V+ + +   D   
Sbjct: 196 SKRLEEKIENLLNEDENAEEDDDDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASS 255

Query: 207 IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRN 264
             +++I L++       GL    + +   + A V S+EDHG ++  G+      GF+ + 
Sbjct: 256 KSRKRIELTVDPRQANFGLLKSDLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKK 315

Query: 265 NLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLV 320
            +   +    +K G +   +V   +    V+ LS++  + S  + K        +I+  +
Sbjct: 316 EIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFL 374

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G     +     TVD+          +  N Y    KV  R++  
Sbjct: 375 PGTAAEILLTEVTSSGATGKIMGMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLIST 434

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG +L  ++       + P S      +  I  ++KV++VD GLG+ + I S
Sbjct: 435 FPASDPYKVGFSLLDHVCKFTSETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGS 494

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +Y   +  S    R++G+  L+ L     + S  + 
Sbjct: 495 T--KHVGFVHVSKLADGQVESISAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQ 552

Query: 489 LVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
                 DV  G VVKGK+    I      G IV    G+  L P  H ++  +  P KKF
Sbjct: 553 PFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKF 612

Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           + G  +  R+L V  + ++I +T KK+L+ S+ AI   Y        + G I  ++ HG 
Sbjct: 613 REGMTVSARILSVNPEKRQIRLTLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGA 672

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
            V+FY  V+GF P SE+      +PS  + +GQVV    +S   +  ++ +S    P+  
Sbjct: 673 VVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTF 731

Query: 662 SED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATV 713
           +E      + +  G LV+G V   + + +++ +   G     +  +H+ D     + +T+
Sbjct: 732 TETYKKAFESIHPGLLVTGTVFEKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTL 790

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
            K  I+ G + ++LLVLD + +  L+  S + SL  +A+Q  +P+    +   + V G+V
Sbjct: 791 SK--IRVGQKLNELLVLDIQRTRRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFV 848

Query: 770 CNIIETGCFVRFLGRLTGFAPR 791
            NI  TG FV FLG + G  P+
Sbjct: 849 RNITMTGVFVEFLGGVIGLVPK 870



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 215/444 (48%), Gaps = 51/444 (11%)

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQT 1116
            S +  G + + +I  +K  ++ ++      GRI ++EV D   ++ +       F+  Q 
Sbjct: 949  SDFSFGRVTKCKIVSVKATQINVQLADNIQGRIDVSEVFDSWEDIKDRKQPLRFFRPKQL 1008

Query: 1117 VTARII----AKSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
            ++ARI+    A+S+K         K  ++ELS+KPS L  ++    L      V +G   
Sbjct: 1009 ISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAAD---PLPLNLEQVQVGSSW 1065

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
             G++  + +    + +S +++ +L ++D++ + S L + ++ F IG A+  +V +++ EK
Sbjct: 1066 LGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSAVDIEK 1125

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L  +   + +S   + +           G I+ GR++K+      +++Q+   + G
Sbjct: 1126 GRLDLSAKKGSETLSLDDITV-----------GMILPGRVTKVTER--QVIMQLTDTIVG 1172

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1347
             V   +L +          D  + +P + Y + + ++  V+ + +  +    + LSLR S
Sbjct: 1173 AVDMIDLTD----------DYSKANP-TIYHKNEVLRACVISVDKANK---KISLSLRPS 1218

Query: 1348 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
                       LS+ +      +  +E +  N +V+G+V+ V   G F+ L   + A V 
Sbjct: 1219 ---------KVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVR 1269

Query: 1408 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1467
            +S+LSD Y++  +  F + +LV GRV  V+P   R+++ LK S      ++ +  L +L 
Sbjct: 1270 VSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPV-KLHDLK 1328

Query: 1468 VGDIVIGQIKRVESYGLFITIENT 1491
             G IV G+I++VE +G FI ++ +
Sbjct: 1329 PGQIVTGKIRKVEEFGAFIVVDGS 1352



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 179/407 (43%), Gaps = 47/407 (11%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                 +Q KV  V RG        GL + +        AYV +SD+++  +++ +  ++ 
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGH---GVTAYVRVSDLSDSYLKEWKDSFQV 1287

Query: 460  GSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FGA 
Sbjct: 1288 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFGAF 1346

Query: 516  VQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1347 IVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1393



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 541  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 595
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 596  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 656  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 704  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 817  LDVNSETGRITLSLKQSCCSSTD 839
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 102/518 (19%), Positives = 202/518 (38%), Gaps = 94/518 (18%)

Query: 484  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK---- 538
            +A +  V + SD   G V K K+++V +    VQ    ++    +  +   +E +K    
Sbjct: 939  NAIDDSVNSMSDFSFGRVTKCKIVSVKATQINVQLADNIQGRIDVSEVFDSWEDIKDRKQ 998

Query: 539  PGKKFKVGAELVFRVLGVKSKR----ITVTHKK-TLVKSKLAILSSYAEATDRLITH--- 590
            P + F+    +  R+LGV   R    + ++H+       +L++  S+ +A D L  +   
Sbjct: 999  PLRFFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQ 1058

Query: 591  --------GWITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMYHVGQVVKC 638
                    G+I  I  +  +V     V+G         +L L    E    + +G  ++ 
Sbjct: 1059 VQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVE--KHFPIGSALRV 1116

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--------- 689
             + +      R++LS       +S DD+  +G ++ G V  VT   V++ +         
Sbjct: 1117 NVSAVDIEKGRLDLSAKKGSETLSLDDIT-VGMILPGRVTKVTERQVIMQLTDTIVGAVD 1175

Query: 690  ---IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
               +   YSK   PT +  + +  A V+               +D  +  + LS + S +
Sbjct: 1176 MIDLTDDYSKAN-PTIYHKNEVLRACVIS--------------VDKANKKISLSLRPSKV 1220

Query: 747  NSAQ---QLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
             S+    Q P   S   +  N VV G+V  + + G FV     +T +   S   D    +
Sbjct: 1221 LSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSYLKE 1280

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
               ++ V Q V+  +  V+ E GR+ + LK+S       + ++ H L             
Sbjct: 1281 WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKP----------- 1329

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
                         G ++ GK+ +  +FG  +  +  +++ G     ++A   V+      
Sbjct: 1330 -------------GQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVY 1376

Query: 917  --GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
              G  ++A IL + + +  +   LK  +   F++ + N
Sbjct: 1377 DEGDAVKAKILKIDRKQGKISFGLKASY---FKDEDEN 1411



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1054 LNLEQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH------ 1107

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + 
Sbjct: 1108 --FPIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVT 1158

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  
Sbjct: 1159 ERQVIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLR 1216

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L ++
Sbjct: 1217 PSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDS 1276

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I   
Sbjct: 1277 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-T 1334

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             K+ +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     
Sbjct: 1335 GKIRKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRK 1392

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1393 QGKISFGLKASYFK 1406



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 131/296 (44%), Gaps = 49/296 (16%)

Query: 1051 SSKRAKKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
            S+K+  +  S D   VG ++   +T++   ++ ++      G + + ++ DD S     +
Sbjct: 1131 SAKKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTI 1190

Query: 1108 FSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS--- 1162
            +      + + A +I+  K+NK          LS++PS +    + S L  ++ +++   
Sbjct: 1191 YHK---NEVLRACVISVDKANKK-------ISLSLRPSKV----LSSSLPVQDPEITSME 1236

Query: 1163 ---IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
               +   V G+V KV +    +T+   + A + + D     S L+E++  F + + V G 
Sbjct: 1237 QVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSD--LSDSYLKEWKDSFQVDQLVKGR 1294

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGG 1276
            V  ++ E+  L++ L+        ++V   N      +H+   G IV G+I K+      
Sbjct: 1295 VTVVDPEQGRLQICLK--------ESVLDPNYKAPVKLHDLKPGQIVTGKIRKVEEFGAF 1346

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            +VV    ++ G  H +E+    V D  + YDEG             VK K+L+I R
Sbjct: 1347 IVVDGSANISGLCHRSEMAENRVDDARTVYDEGDA-----------VKAKILKIDR 1391


>gi|317136747|ref|XP_001727253.2| rRNA biogenesis protein RRP5 [Aspergillus oryzae RIB40]
          Length = 1818

 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 200/814 (24%), Positives = 352/814 (43%), Gaps = 79/814 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
           DD P FPRGGG  LT  ER +I  +   +    E+   K + K  +  E    E VDD  
Sbjct: 56  DDEPSFPRGGGSVLTPLERKQIQIQATKDV-LFEQKATKGSSKNDEHDEDAEMEDVDDTT 114

Query: 109 SL--------------FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLP 154
           +                 D    K       +  K +  G  + G V+ ++  D+ + LP
Sbjct: 115 ATATKKSRKRKTKSKKSADEAQDKQGVRIEGLNFKRVVPGTMVLGQVSSISAHDIGLSLP 174

Query: 155 GGLRG---LARAADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIV 197
             L G   L   +  L+  ++N +  +E+                L   F++GQ +   V
Sbjct: 175 NNLTGYVPLTAVSKRLEEKIENLLNEDENAEEDDDDDDDDEDSIDLSDYFYLGQYLRAYV 234

Query: 198 LQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
           + + +   D     +++I L++       GL    + +   + A V S+EDHG ++  G+
Sbjct: 235 VSVGNNAADASSKSRKRIELTVDPRQANFGLLKSDLVDNTAVQASVVSVEDHGLVMDLGI 294

Query: 255 --PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD- 310
                 GF+ +  +   +    +K G +   +V   +    V+ LS++  + S  + K  
Sbjct: 295 EGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKLSANLQS-SGSIKKSH 353

Query: 311 --LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
                 +I+  +PG      +  +  +G     +     TVD+          +  N Y 
Sbjct: 354 YLSTAPTINSFLPGTAAEILLTEVTSSGATGKIMGMLDTTVDLVQSGGNSSPDDLANKYK 413

Query: 369 QHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRV 419
              KV  R++   P S    VG +L  ++       + P S      +  I  ++KV++V
Sbjct: 414 IGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTSETQGPGSSEDAPAISAIVPEAKVIKV 473

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILGFRHLEGL 476
           D GLG+ + I ST      +V +S +A+ +V  +  +Y   +  S    R++G+  L+ L
Sbjct: 474 DPGLGVYVQIGST--KHVGFVHVSKLADGQVESISAEYGPFRTDSTHEGRVVGYSALDNL 531

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHM 531
                + S  +       DV  G VVKGK+    I      G IV    G+  L P  H 
Sbjct: 532 YLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIVALADGITGLVPSMHF 591

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
           ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ AI   Y        +
Sbjct: 592 ADTALQFPEKKFREGMTVSARILSVNPEKRQIRLTLKKSLLNSESAIWKDYDSIVAGAQS 651

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G I  ++ HG  V+FY  V+GF P SE+      +PS  + +GQVV    +S   +  +
Sbjct: 652 PGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEK 711

Query: 650 INLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
           + +S    P+  +E      + +  G LV+G V   + + +++ +   G     +  +H+
Sbjct: 712 LAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVFEKSSDDLLLKLDDYGLV-ARLNLDHV 769

Query: 705 AD---HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDAS 757
            D     + +T+ K  I+ G + ++LLVLD + +  L+  S + SL  +A+Q  +P+   
Sbjct: 770 VDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRTRRLIRVSGRASLKKAAKQGLIPASFE 827

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 828 DVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 861



 Score =  143 bits (360), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 195/866 (22%), Positives = 377/866 (43%), Gaps = 114/866 (13%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G ++  ++ P+ +  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 551  VTIGAVVKGKIEKLLIGPSGLDGLIVALADGIT-GLVPSMHFADTALQFPEKK--FREGM 607

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ E   + L+ K SL+NS   +  D   I   +   G + N+   G  V+F
Sbjct: 608  TVSARILSVNPEKRQIRLTLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGAVVQF 667

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ + +GQ V  + L V+S       SL++   S  D S
Sbjct: 668  YGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDS-------SLEKLAVSCKDPS 720

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
               E +    K A    S H G     V G +     +  + + +D+G+V        V 
Sbjct: 721  TFTETY----KKAF--ESIHPG---LLVTGTVFEKSSDDLLLKLDDYGLVARLNLDHVVD 771

Query: 902  GFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
            G  +      + +  G  + +  +LD+ +  RL+ +S +           S ++A K+  
Sbjct: 772  GSPSKQSSTLSKIRVGQKLNELLVLDIQRTRRLIRVSGRA----------SLKKAAKQGL 821

Query: 961  KREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQ 1019
               + +D+     V   V  I      V  L      +    V D N  K P       Q
Sbjct: 822  IPASFEDVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPKRLVGDENLNK-PDFGLTKSQ 880

Query: 1020 SVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS------------------- 1060
             V ATV ++       R  +L +  +E   +  K+   KS+                   
Sbjct: 881  VVSATVHSVDPDF---RRFILSRNPAEATQAGPKKPAAKSAVKSAPSDDIVTNAIDDSVN 937

Query: 1061 ----YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 1114
                +  G + + +I  +K  ++ ++      GRI ++EV D   ++ +       F+  
Sbjct: 938  SMSDFSFGRVTKCKIVSVKATQINVQLADNIQGRIDVSEVFDSWEDIKDRKQPLRFFRPK 997

Query: 1115 QTVTARII----AKSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1165
            Q ++ARI+    A+S+K         K  ++ELS+KPS L  ++    L      V +G 
Sbjct: 998  QLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAAD---PLPLNLEQVQVGS 1054

Query: 1166 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
               G++  + +    + +S +++ +L ++D++ + S L + ++ F IG A+  +V +++ 
Sbjct: 1055 SWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSAVDI 1114

Query: 1226 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285
            EK  L L  +   + +S   + +           G I+ GR++K+      +++Q+   +
Sbjct: 1115 EKGRLDLSAKKGSETLSLDDITV-----------GMILPGRVTKVTER--QVIMQLTDTI 1161

Query: 1286 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1345
             G V   +L +          D  + +P + Y + + ++  V+ + +  +    + LSLR
Sbjct: 1162 VGAVDMIDLTD----------DYSKANP-TIYHKNEVLRACVISVDKANK---KISLSLR 1207

Query: 1346 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1405
             S           LS+ +      +  +E +  N +V+G+V+ V   G F+ L   + A 
Sbjct: 1208 PS---------KVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAY 1258

Query: 1406 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1465
            V +S+LSD Y++  +  F + +LV GRV  V+P   R+++ LK S      ++ +  L +
Sbjct: 1259 VRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPV-KLHD 1317

Query: 1466 LHVGDIVIGQIKRVESYGLFITIENT 1491
            L  G IV G+I++VE +G FI ++ +
Sbjct: 1318 LKPGQIVTGKIRKVEEFGAFIVVDGS 1343



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 179/407 (43%), Gaps = 47/407 (11%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 993  FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1052

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1053 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1111

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1112 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1162

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1163 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1221

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                 +Q KV  V RG        GL + +        AYV +SD+++  +++ +  ++ 
Sbjct: 1222 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGH---GVTAYVRVSDLSDSYLKEWKDSFQV 1278

Query: 460  GSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FGA 
Sbjct: 1279 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFGAF 1337

Query: 516  VQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1338 IVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1384



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 541  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 595
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1097 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1147

Query: 596  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1148 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1205

Query: 656  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1206 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1263

Query: 704  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1264 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1317

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1318 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1377

Query: 817  LDVNSETGRITLSLKQSCCSSTD 839
            L ++ + G+I+  LK S     D
Sbjct: 1378 LKIDRKQGKISFGLKASYFKDED 1400



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 102/518 (19%), Positives = 202/518 (38%), Gaps = 94/518 (18%)

Query: 484  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK---- 538
            +A +  V + SD   G V K K+++V +    VQ    ++    +  +   +E +K    
Sbjct: 930  NAIDDSVNSMSDFSFGRVTKCKIVSVKATQINVQLADNIQGRIDVSEVFDSWEDIKDRKQ 989

Query: 539  PGKKFKVGAELVFRVLGVKSKR----ITVTHKK-TLVKSKLAILSSYAEATDRLITH--- 590
            P + F+    +  R+LGV   R    + ++H+       +L++  S+ +A D L  +   
Sbjct: 990  PLRFFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQ 1049

Query: 591  --------GWITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMYHVGQVVKC 638
                    G+I  I  +  +V     V+G         +L L    E    + +G  ++ 
Sbjct: 1050 VQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVE--KHFPIGSALRV 1107

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--------- 689
             + +      R++LS       +S DD+  +G ++ G V  VT   V++ +         
Sbjct: 1108 NVSAVDIEKGRLDLSAKKGSETLSLDDIT-VGMILPGRVTKVTERQVIMQLTDTIVGAVD 1166

Query: 690  ---IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
               +   YSK   PT +  + +  A V+               +D  +  + LS + S +
Sbjct: 1167 MIDLTDDYSKAN-PTIYHKNEVLRACVIS--------------VDKANKKISLSLRPSKV 1211

Query: 747  NSAQ---QLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
             S+    Q P   S   +  N VV G+V  + + G FV     +T +   S   D    +
Sbjct: 1212 LSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSYLKE 1271

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
               ++ V Q V+  +  V+ E GR+ + LK+S       + ++ H L             
Sbjct: 1272 WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKP----------- 1320

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
                         G ++ GK+ +  +FG  +  +  +++ G     ++A   V+      
Sbjct: 1321 -------------GQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVY 1367

Query: 917  --GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
              G  ++A IL + + +  +   LK  +   F++ + N
Sbjct: 1368 DEGDAVKAKILKIDRKQGKISFGLKASY---FKDEDEN 1402



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1045 LNLEQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH------ 1098

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + 
Sbjct: 1099 --FPIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVT 1149

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  
Sbjct: 1150 ERQVIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLR 1207

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L ++
Sbjct: 1208 PSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDS 1267

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I   
Sbjct: 1268 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-T 1325

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             K+ +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     
Sbjct: 1326 GKIRKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRK 1383

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1384 QGKISFGLKASYFK 1397



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 131/296 (44%), Gaps = 49/296 (16%)

Query: 1051 SSKRAKKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
            S+K+  +  S D   VG ++   +T++   ++ ++      G + + ++ DD S     +
Sbjct: 1122 SAKKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTI 1181

Query: 1108 FSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS--- 1162
            +      + + A +I+  K+NK          LS++PS +    + S L  ++ +++   
Sbjct: 1182 YHK---NEVLRACVISVDKANKK-------ISLSLRPSKV----LSSSLPVQDPEITSME 1227

Query: 1163 ---IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
               +   V G+V KV +    +T+   + A + + D     S L+E++  F + + V G 
Sbjct: 1228 QVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSD--LSDSYLKEWKDSFQVDQLVKGR 1285

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGG 1276
            V  ++ E+  L++ L+        ++V   N      +H+   G IV G+I K+      
Sbjct: 1286 VTVVDPEQGRLQICLK--------ESVLDPNYKAPVKLHDLKPGQIVTGKIRKVEEFGAF 1337

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            +VV    ++ G  H +E+    V D  + YDEG             VK K+L+I R
Sbjct: 1338 IVVDGSANISGLCHRSEMAENRVDDARTVYDEGDA-----------VKAKILKIDR 1382


>gi|406602958|emb|CCH45514.1| rRNA biogenesis protein [Wickerhamomyces ciferrii]
          Length = 1724

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 211/850 (24%), Positives = 350/850 (41%), Gaps = 83/850 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG  +LT  E  E+  E   +    +          K   +R   +      S   D
Sbjct: 41  FPRGGASALTPLELKEVANEAAGDVLFGKESSGASQPSTKSDDQRPLKKKKTSKVSKTQD 100

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN 173
             + K       +  K++  G  + G + E+N  DL + LP  L G          I   
Sbjct: 101 S-NDKPSVKIESLNFKSLQPGTSVLGQILEINRLDLALALPDNLIGYVPITSISSSITKQ 159

Query: 174 ----------------------------------EIEANEDNLLPTIFHVGQLVSCIVLQ 199
                                               E+ E   L   F +GQ +  +V++
Sbjct: 160 LEDFEESDSEDEDEDESEDEEQDEENKTTKGTLKTKESKEFPQLSKFFKIGQWLRAVVVE 219

Query: 200 -LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
                KK+  K++I LS+ +    K L  + +  G  L   VKS+EDHG IL  G     
Sbjct: 220 STQKGKKKQNKKRIQLSVEIETTNKDLEDDDLVAGTTLQVSVKSVEDHGLILDTGREGLG 279

Query: 259 GFLPRNNLAENSGID---VKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
           GF+    L +N+  D   + PG + L  VV    RT  V   +   + V+          
Sbjct: 280 GFISNKEL-KNANYDSTAIVPGTVFLSTVVNKNARTVTVKLNTGKKNPVTTTS------- 331

Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
           SID +VPG  + T +  + ++G+          ++++ HL  T+     K+ Y     + 
Sbjct: 332 SIDSIVPGNYIETLITEVHQDGLATKTYGLVDSSINLTHL-GTYSAEEIKHKYAIGSNIK 390

Query: 375 ARILFVDPTSRAVGLTLN--PYLLH----------NRAPPSHVKVGDIYDQSKVVRVDRG 422
           AR++ V  ++ A  L L+  P++L+          + AP     +G I++  +V   D  
Sbjct: 391 ARVIAVILSNGAKKLVLSVLPHVLNLNETNYDTEVSSAPLDAFPLGHIFESVEVKGYDSN 450

Query: 423 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 482
              +       +    Y        +    L   Y  GS  + R+LGF  L+      + 
Sbjct: 451 YIYV------KIGGDRYGQAHTSRADTTAGLSITYTIGSQHKARVLGFSQLDNSYVLTMD 504

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
               E       D+  G  V G+VI+V      ++     +A+ P  HMS+ +++ P +K
Sbjct: 505 PKVIEQKYLKAQDLPLGEKVNGEVISVSEDSMKIKIFKQFEAVVPAAHMSDVKLIYPERK 564

Query: 543 FKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           FK+G+++  R++ +   +  ITVT KK+LV  +  +++   +A     T   +T     G
Sbjct: 565 FKIGSKVRGRIINISKYTSEITVTLKKSLVGIE-NVITKIDDAKVGERTSVTVTSFRPSG 623

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
             V F+  ++ F P+SE+      +P     +GQ +  RI S    + RI++S  +    
Sbjct: 624 ALVSFFGNLKAFLPKSEISETFVKKPEDHLRLGQTITVRIASVNKETHRISVSCRLSE-E 682

Query: 661 VSEDDLVKLGSLVSG----VVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVM 714
            +E+    L  LV G     V++V  +   V V   G + +G I   HL+D + E    +
Sbjct: 683 TTEEQQQALEQLVVGRSILKVEIVEKSKESVIVEIPGNNLRGVIFEGHLSDGNFEQNRAI 742

Query: 715 KSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LPSDASHIH-PNSVVHGYV 769
              ++ G   +  LVLD +S + L  L+AK SLI +AQ+  LP   S I     ++ GYV
Sbjct: 743 LKRLEVGSSIEG-LVLDKDSRSRLFNLTAKKSLITAAQEDKLPVKFSDISISEQLIPGYV 801

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            ++   G FV F  +L G      A      DLS  ++V QSV   ++  + E  R  LS
Sbjct: 802 KSVTNKGIFVAFGAKLVGLILAKYATSRPVDDLSSVFHVNQSVSVRVIRTDEEHNRFLLS 861

Query: 830 LKQSCCSSTD 839
           LK+   +S D
Sbjct: 862 LKEKKTTSDD 871



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 224/1054 (21%), Positives = 424/1054 (40%), Gaps = 173/1054 (16%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            PG  ++  +  V   G   +  G V +   L H+  +   +   K+ +G+ +  RV+ V 
Sbjct: 338  PGNYIETLITEVHQDGLATKTYGLVDSSINLTHLGTYSAEEIKHKYAIGSNIKARVIAV- 396

Query: 558  SKRITVTHKKTLVKSKLAILSSYAEAT----------DRLITHGWITKIEKHG-----CF 602
               I     K LV S L  + +  E            D          +E  G      +
Sbjct: 397  ---ILSNGAKKLVLSVLPHVLNLNETNYDTEVSSAPLDAFPLGHIFESVEVKGYDSNYIY 453

Query: 603  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
            V+      G A  S      G   S  Y +G   K R++     S+  N   +    +V 
Sbjct: 454  VKIGGDRYGQAHTSRADTTAGL--SITYTIGSQHKARVLG---FSQLDNSYVLTMDPKVI 508

Query: 663  EDDLVK-----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
            E   +K     LG  V+G V  V+ +++ + +  +   +  +P  H++D          +
Sbjct: 509  EQKYLKAQDLPLGEKVNGEVISVSEDSMKIKIFKQ--FEAVVPAAHMSD--------VKL 558

Query: 718  IKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGY 768
            I P  +F        +++ +   +S + ++ K SL+     +    DA      SV    
Sbjct: 559  IYPERKFKIGSKVRGRIINISKYTSEITVTLKKSLVGIENVITKIDDAKVGERTSVT--- 615

Query: 769  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
            V +   +G  V F G L  F P+S+  +           +GQ++   I  VN ET RI++
Sbjct: 616  VTSFRPSGALVSFFGNLKAFLPKSEISETFVKKPEDHLRLGQTITVRIASVNKETHRISV 675

Query: 829  SLKQSCCSSTDASFMQEHFLLEE---KIAMLQSSKHN------GSELKWVEGFIIGSVIE 879
            S + S  ++ +     E  ++     K+ +++ SK +      G+ L+       G + E
Sbjct: 676  SCRLSEETTEEQQQALEQLVVGRSILKVEIVEKSKESVIVEIPGNNLR-------GVIFE 728

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
            G + + N       FE++  +             +E GS I+  +LD     RL +L+ K
Sbjct: 729  GHLSDGN-------FEQNRAIL----------KRLEVGSSIEGLVLDKDSRSRLFNLTAK 771

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIG 998
               I           AQ+ K   + S D+ +  Q +   V+ V    + ++       + 
Sbjct: 772  KSLI---------TAAQEDKLPVKFS-DISISEQLIPGYVKSVTNKGIFVAFGAKLVGLI 821

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS------ 1052
             A  +           F   QSV  +V  + +     R LL LK   E +T+S       
Sbjct: 822  LAKYATSRPVDDLSSVFHVNQSV--SVRVIRTDEEHNRFLLSLK---EKKTTSDDIVNPV 876

Query: 1053 -KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFS 1109
             +  K    +  G L +A I  +K  +L ++      GR+ ++++ +  D+    +   +
Sbjct: 877  DQTIKSAKEFVPGKLTKALIKSVKQSQLNVQLADNIQGRVDVSQIYETYDEIKNPKVPLA 936

Query: 1110 NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
             FK G  +  ++I   +  + +         K  L ELS K S LT     + L F++  
Sbjct: 937  PFKKGDIIDVKVIGFHDARNHRFLPISHRRSKQILIELSAKKSDLTEGTTEA-LSFDK-- 993

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +++G     ++      +  L +S  +K ++  +D   + S L++    + IG A+   V
Sbjct: 994  LTVGTEWVAFINNATVGFFFLNLSPSIKGRISFMDLPGDASALKDLDGNYPIGSALKVKV 1053

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             +++ E   + L  R  QD IS  T++         +  G +V  RI +I      ++V+
Sbjct: 1054 KAVDAENHNVLLTGR--QDSIS--TIED--------VKVGAVVPSRILRITESF--VIVE 1099

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +  ++      T        D L  Y +   D    +++ + +  K+L +    +    +
Sbjct: 1100 LAENVTAMSFIT--------DALDDYSKKLEDV---FEKNEILPAKILSVDEHNK---KL 1145

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             +SLRS+                D   K + K +DL    +V G+VKN++ KG FI L R
Sbjct: 1146 NVSLRSN----------------DAKDKLISKSDDLKRGDVVHGFVKNISDKGLFISLGR 1189

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1460
             +   V +S++SD ++++ +K +   + V G++++ +     V +TLK S+       E+
Sbjct: 1190 TVTGYVKVSDVSDSFIKAWKKYYKPHQQVIGKIINADT-EGNVTLTLKESE----VNGEL 1244

Query: 1461 NNLSNLH---VGDIVIGQIKRVESYGLFITIENT 1491
            N L       +GDI  G ++RV  +G+F+ ++ T
Sbjct: 1245 NILKRFEDIVIGDIFEGSVRRVTDFGVFVKLDGT 1278



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 107/480 (22%), Positives = 198/480 (41%), Gaps = 72/480 (15%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIVK----PGKKFKVGAELVFR 552
            PG + K  + +V      VQ    ++    +  + E ++ +K    P   FK G  +  +
Sbjct: 888  PGKLTKALIKSVKQSQLNVQLADNIQGRVDVSQIYETYDEIKNPKVPLAPFKKGDIIDVK 947

Query: 553  VLGVKSKR----ITVTHKKT---LV-----KSKLAILSSYAEATDRL-ITHGWITKIEKH 599
            V+G    R    + ++H+++   L+     KS L   ++ A + D+L +   W+  I   
Sbjct: 948  VIGFHDARNHRFLPISHRRSKQILIELSAKKSDLTEGTTEALSFDKLTVGTEWVAFINNA 1007

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQVVKCRIMSSIPASRRINLS 653
                 F N       R      PG + S++      Y +G  +K ++ +    +  + L+
Sbjct: 1008 TVGFFFLNLSPSIKGRISFMDLPG-DASALKDLDGNYPIGSALKVKVKAVDAENHNVLLT 1066

Query: 654  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE--HA 711
                     ED  VK+G++V   +  +T + V+V  +A+  +  +  T+ L D+ +    
Sbjct: 1067 GRQDSISTIED--VKVGAVVPSRILRITESFVIVE-LAENVTAMSFITDALDDYSKKLED 1123

Query: 712  TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
               K+ I P     ++L +D  +  L +S + +  ++  +L S +  +    VVHG+V N
Sbjct: 1124 VFEKNEILPA----KILSVDEHNKKLNVSLRSN--DAKDKLISKSDDLKRGDVVHGFVKN 1177

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            I + G F+     +TG+   S   D       K Y   Q V   I++ ++E G +TL+LK
Sbjct: 1178 ISDKGLFISLGRTVTGYVKVSDVSDSFIKAWKKYYKPHQQVIGKIINADTE-GNVTLTLK 1236

Query: 832  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWVEGFIIGSVIEGKVHESNDFG 889
            +S                            NG  + LK  E  +IG + EG V    DFG
Sbjct: 1237 ESEV--------------------------NGELNILKRFEDIVIGDIFEGSVRRVTDFG 1270

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVF 942
            V V  +   ++ G   H Q+A   V         G  ++  +L V   ++ + L +K  +
Sbjct: 1271 VFVKLDGTLNISGLCHHSQIADNDVTDLEALFGEGDRVKVKVLAVDTGKKQLSLGMKASY 1330



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 120/302 (39%), Gaps = 50/302 (16%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMV----STRVQSI 332
            G  L+  V+++D     V L+   D++S      ++ + +  +VP  ++    S  +  +
Sbjct: 1046 GSALKVKVKAVDAENHNVLLTGRQDSIST-----IEDVKVGAVVPSRILRITESFVIVEL 1100

Query: 333  LENGVMLSFLT-----YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV 387
             EN   +SF+T     Y     D+F      P               A+IL VD  ++  
Sbjct: 1101 AENVTAMSFITDALDDYSKKLEDVFEKNEILP---------------AKILSVDEHNKK- 1144

Query: 388  GLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 441
               LN  L  N A    +   D   +  VV        D+GL + L    T      YV 
Sbjct: 1145 ---LNVSLRSNDAKDKLISKSDDLKRGDVVHGFVKNISDKGLFISLGRTVT-----GYVK 1196

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKP 498
            +SDV++  ++  +K YK    V  +I+     EG  T  LK S   G   ++    D+  
Sbjct: 1197 VSDVSDSFIKAWKKYYKPHQQVIGKIIN-ADTEGNVTLTLKESEVNGELNILKRFEDIVI 1255

Query: 499  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            G + +G V  V  FG  V+  G   +  LC    +++ ++      F  G  +  +VL V
Sbjct: 1256 GDIFEGSVRRVTDFGVFVKLDGTLNISGLCHHSQIADNDVTDLEALFGEGDRVKVKVLAV 1315

Query: 557  KS 558
             +
Sbjct: 1316 DT 1317


>gi|448510670|ref|XP_003866400.1| hypothetical protein CORT_0A05730 [Candida orthopsilosis Co 90-125]
 gi|380350738|emb|CCG20960.1| hypothetical protein CORT_0A05730 [Candida orthopsilosis Co 90-125]
          Length = 1705

 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 207/858 (24%), Positives = 368/858 (42%), Gaps = 104/858 (12%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG   LT  E  EI  E   D  FE   +      KK+ K T    N       S  
Sbjct: 16  FPRGGATGLTPLEVKEISNEATKDVLFEVASQ------KKRTKNTTDSENPKKKQRTSKK 69

Query: 112 ----------GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL- 160
                     GD    K  +    ++ KN+  G  ++G +  +N+ D+V+ L   L G  
Sbjct: 70  KGSKSESLKDGDDEDEKKTQI-EYLSFKNLVPGSFVFGQIQAINKLDIVLALGNNLVGYV 128

Query: 161 ---ARAADALDPILDNE-------------------IEANEDNLLP---TIFHVGQLVSC 195
              A ++  +D I   E                   I +  + + P   +IF +G  +  
Sbjct: 129 PITAISSHVIDLIKKYEEESEEEEEDEEDYDDNGTLINSKPEKVFPDLKSIFQIGSWLKA 188

Query: 196 IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 255
            V++ +       K++I +S+   ++   L  E +  G +L+  VKSIEDHG IL  G+ 
Sbjct: 189 KVVETETS----NKKRIEMSIEPEIVNAHLEKEDIVSGNILSCSVKSIEDHGLILESGIE 244

Query: 256 SFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK----VVYLSSDPDTVSKCVTKDL 311
             + F+    L      +++P    QG+V +     K    ++ +     + +K +T   
Sbjct: 245 GLSAFVSNKEL---KNAEIEPSTCAQGLVFTTTVVSKPSGRIITVKPAVPSTTKKLTPIT 301

Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
              S+D +  G +V   V  + ++G+         GT++   +Q  F     K+ +    
Sbjct: 302 TISSVDAIQVGAIVDALVSDVTDSGIGARVFGLVDGTINFSDVQ-IFSVEELKHKFAIGS 360

Query: 372 KVNARILFVDPTS--RAVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVRVDR-- 421
            V ARI+ +      R + L+L  + L      S  +      VG ++D  +V+  D+  
Sbjct: 361 NVKARIMAILQKGGVRKLVLSLVSHSLQMGDGTSRTEALEAFPVGHVFDVVEVLGSDQEY 420

Query: 422 ---GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
               LGL         ST   +  S++ +    K    Y   S  + R++ +  ++ L  
Sbjct: 421 IFVKLGL---------STFGQIHNSNIDDS---KTLIDYSVSSKHKARVIAYNMVDNLYV 468

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKG----KVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
              K S  E    +  D+  G ++      KV+  DS G  V+     +   P  HMS+ 
Sbjct: 469 LTFKPSTIEAPYLSVRDIPVGTLLPNCEITKVLP-DSGGIQVKLLDDFQGFIPSNHMSDI 527

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWI 593
           ++V P +KF++G+++  R+L  K K   VT +K+LV      ILS++ +A   + T+  +
Sbjct: 528 KLVYPERKFRIGSKVKGRLLSHKGKTPLVTVRKSLVNLEDDDILSNFEDAKIGMKTNATV 587

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            K    G  V F+  ++ F P++E+      + S    +GQVV  +I+      +R+ ++
Sbjct: 588 EKFVHGGVIVSFFGSLRAFLPKTEISETFVDDASKYLKLGQVVNVKILDINEDQKRLVVT 647

Query: 654 FMMKPTRVSEDDLVKLGSLVSGV-----VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-- 706
            + + +++S     ++ +L+ G+     V V   N  V+  +     +G +    L+D  
Sbjct: 648 -LKQSSQLSTSQKTEIANLIPGISVVQAVVVEKKNDSVLIELEGSNLRGVVHDGQLSDGN 706

Query: 707 -HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 761
                A   K+ I    E   +L+L  D ++  ++ +AK SLI +++  QLP+D   + P
Sbjct: 707 YEQNRALFKKTEINSKLE---VLILEKDFKARTVIATAKKSLIEASKRKQLPTDFDDVQP 763

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
           N ++ GYV ++   G FV F GRLTG             DLS+ +Y  QS+   +L V++
Sbjct: 764 NKIIKGYVKSVTNLGLFVCFTGRLTGLILAKYVSKTAHEDLSRRFYKYQSLACRVLSVDT 823

Query: 822 ETGRITLSLKQSCCSSTD 839
           E  R  L++  S  +  D
Sbjct: 824 ENKRFLLTIADSNDTEGD 841



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 184/828 (22%), Positives = 348/828 (42%), Gaps = 125/828 (15%)

Query: 696  KGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQ 750
            +G IP+ H++D    + E    + S +K         +L ++    L++ + SL+N    
Sbjct: 516  QGFIPSNHMSDIKLVYPERKFRIGSKVKGR-------LLSHKGKTPLVTVRKSLVNLEDD 568

Query: 751  QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
             + S+          +  V   +  G  V F G L  F P+++  +    D SK   +GQ
Sbjct: 569  DILSNFEDAKIGMKTNATVEKFVHGGVIVSFFGSLRAFLPKTEISETFVDDASKYLKLGQ 628

Query: 811  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
             V   ILD+N +  R+ ++LKQS   ST                         S+   + 
Sbjct: 629  VVNVKILDINEDQKRLVVTLKQSSQLST-------------------------SQKTEIA 663

Query: 871  GFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
              I G SV++  V E  +  V++  E  S++ G +   QL+    E    +       +K
Sbjct: 664  NLIPGISVVQAVVVEKKNDSVLIELE-GSNLRGVVHDGQLSDGNYEQNRALFKKTEINSK 722

Query: 930  AERLV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 986
             E L+   D   +TV         S  +A K+K+      D+  ++ +   V+ V    L
Sbjct: 723  LEVLILEKDFKARTVIA---TAKKSLIEASKRKQLPTDFDDVQPNKIIKGYVKSVTNLGL 779

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
             +        +  A        +   ++F   QS+   V+++ + +   R LL +   ++
Sbjct: 780  FVCFTGRLTGLILAKYVSKTAHEDLSRRFYKYQSLACRVLSVDTENK--RFLLTIADSND 837

Query: 1047 TE----TSSSKRAKKK-SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            TE    T+     KK    Y  G + +A I  +K  +L ++     +GR+ +T+      
Sbjct: 838  TEGDNLTNPVDSTKKTVEDYAPGVVTKAIIKSVKGTQLNVRLADNLNGRVDVTQCFKSIK 897

Query: 1102 NVVENL---FSNFKIGQTVTARIIAKSNKPD----------MKKSFLWELSIKPSMLTVS 1148
            ++ +NL    S F  G  +  ++I   +  +            K  + ELS++ + +   
Sbjct: 898  DI-KNLSQPLSGFHKGDELNVKVIGVHDAKNHTFLPITHNKANKQTIIELSLQDAKVNRK 956

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
             + +  L    DV  G  +  +V  VD  +  ++I+  +K ++  +D + + +    F  
Sbjct: 957  HLSALKL---ADVKKGDELVAFVNNVDRGFVWVSITPSIKGRVSFMDLSDDGTIFHNFDN 1013

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLV-----LRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
            R+ IG AV   V  ++ E + L L      +R F D    KT            +   I+
Sbjct: 1014 RYPIGAAVQVKVKEVDNEHQTLALTSREHYIRSFDDVKKGKT------------YPARII 1061

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
              + S +L  +GG V+                +  ++D L+ Y + + D   G+   ++V
Sbjct: 1062 KVKDSYVLVDLGGKVIA---------------SSFITDALNNYSD-KLD--HGFHVNEYV 1103

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
              KVL+I    +    + +SLR                D D+  + ++  EDLS   IV+
Sbjct: 1104 GAKVLDIDADQQ---KISVSLR----------------DEDSTDRTIDSFEDLSRGDIVK 1144

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G+VKNV++ G ++ L R + A V +S+LSD Y++  +K F   + V G++++ +    R+
Sbjct: 1145 GFVKNVSTNGVYVSLGRSVFALVRVSDLSDSYLKDWKKFFKPNQSVTGKIINCKE-EGRI 1203

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
             +TLK S+     ++ +    +L VGDI  G + +   +G+F+ ++ T
Sbjct: 1204 LMTLKESEVNGELKT-MKTFDDLAVGDIFEGHVTKTTDFGVFVKLDGT 1250



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 169/798 (21%), Positives = 301/798 (37%), Gaps = 137/798 (17%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
            + E  + GM   A V+     G I+ F   S   FLP+  ++E    D    L L  VV 
Sbjct: 573  NFEDAKIGMKTNATVEKFVHGGVIVSF-FGSLRAFLPKTEISETFVDDASKYLKLGQVVN 631

Query: 286  ------SIDRTRKVVYL--SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
                  + D+ R VV L  SS   T  K          I  L+PG+ V   VQ+++    
Sbjct: 632  VKILDINEDQKRLVVTLKQSSQLSTSQKT--------EIANLIPGISV---VQAVVVEKK 680

Query: 338  MLSFLTYFTGT--VDIFHLQNTFPTTNWKNDYNQHKK--VNAR----ILFVDPTSRAVGL 389
              S L    G+    + H        N++ +    KK  +N++    IL  D  +R V  
Sbjct: 681  NDSVLIELEGSNLRGVVH-DGQLSDGNYEQNRALFKKTEINSKLEVLILEKDFKARTVIA 739

Query: 390  TLNPYLLHNRAPPSHVKVGDIYDQSKV----VRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
            T    L+            D    +K+    V+    LGL +              +S  
Sbjct: 740  TAKKSLIEASKRKQLPTDFDDVQPNKIIKGYVKSVTNLGLFVCFTGRLTGLILAKYVSKT 799

Query: 446  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH---------SDV 496
            A E++ +   KY+  +C RV  +   +   L T I  ++  EG   T+          D 
Sbjct: 800  AHEDLSRRFYKYQSLAC-RVLSVDTENKRFLLT-IADSNDTEGDNLTNPVDSTKKTVEDY 857

Query: 497  KPGMVVKGKVIAV----------DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
             PG+V K  + +V          D+    V      K++  + ++S+     P   F  G
Sbjct: 858  APGVVTKAIIKSVKGTQLNVRLADNLNGRVDVTQCFKSIKDIKNLSQ-----PLSGFHKG 912

Query: 547  AELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
             EL  +V+GV   +    + +TH K   ++ + +    A+   + ++   +  ++K    
Sbjct: 913  DELNVKVIGVHDAKNHTFLPITHNKANKQTIIELSLQDAKVNRKHLSALKLADVKKGDEL 972

Query: 603  VRFYNGV-QGF-------APRSELGLDPGCEPSSMYH-------VGQVVKCRIMSSIPAS 647
            V F N V +GF       + +  +      +  +++H       +G  V+ ++       
Sbjct: 973  VAFVNNVDRGFVWVSITPSIKGRVSFMDLSDDGTIFHNFDNRYPIGAAVQVKVKEVDNEH 1032

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV----YVIAKGYSKGTIPTEH 703
            + + L+      R  +D  VK G      +  V  + V+V     VIA  +   T    +
Sbjct: 1033 QTLALTSREHYIRSFDD--VKKGKTYPARIIKVKDSYVLVDLGGKVIASSFI--TDALNN 1088

Query: 704  LADHLEHATVMKSVIKPGYEFDQLL---VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
             +D L+H          G+  ++ +   VLD ++    +S      +S  +       + 
Sbjct: 1089 YSDKLDH----------GFHVNEYVGAKVLDIDADQQKISVSLRDEDSTDRTIDSFEDLS 1138

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
               +V G+V N+   G +V     +      S   D    D  K +   QSV   I++  
Sbjct: 1139 RGDIVKGFVKNVSTNGVYVSLGRSVFALVRVSDLSDSYLKDWKKFFKPNQSVTGKIINCK 1198

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF---IIGSV 877
             E GRI ++LK+S                            NG ELK ++ F    +G +
Sbjct: 1199 EE-GRILMTLKESEV--------------------------NG-ELKTMKTFDDLAVGDI 1230

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKA 930
             EG V ++ DFGV V  +   ++ G   H +++   V++       G  ++  IL +  +
Sbjct: 1231 FEGHVTKTTDFGVFVKLDGTVNISGLCHHSEISENDVKNVMALFGEGDRVKVKILKIDPS 1290

Query: 931  ERLVDLSLKTVFIDRFRE 948
            ++ + L +K  + D   E
Sbjct: 1291 KKQLSLGMKASYFDDTHE 1308



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 118/515 (22%), Positives = 206/515 (40%), Gaps = 95/515 (18%)

Query: 996  SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
            +I ++ V  ++ ++   K F  G +V A +MA+       +L+L L + S      + R 
Sbjct: 338  TINFSDVQIFSVEELKHK-FAIGSNVKARIMAILQKGGVRKLVLSLVSHSLQMGDGTSRT 396

Query: 1056 KKKSSYDVGSLVQA-EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
            +   ++ VG +    E+       + +K G+   G+IH + ++D K+ +      ++ + 
Sbjct: 397  EALEAFPVGHVFDVVEVLGSDQEYIFVKLGLSTFGQIHNSNIDDSKTLI------DYSVS 450

Query: 1115 QTVTARIIAKSNKPDMKKSFLWELSIKPSM-----LTVSEIGSKLLFEECDVSIGQRVTG 1169
                AR+IA  N  D     L+ L+ KPS      L+V +I    L   C+++       
Sbjct: 451  SKHKARVIA-YNMVDN----LYVLTFKPSTIEAPYLSVRDIPVGTLLPNCEIT------- 498

Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS------- 1222
               KV  +   + +      Q FI  +     +L   +R+F IG  V G +LS       
Sbjct: 499  ---KVLPDSGGIQVKLLDDFQGFIPSNHMSDIKLVYPERKFRIGSKVKGRLLSHKGKTPL 555

Query: 1223 INKEKKLLRL----VLRPFQDG-ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
            +   K L+ L    +L  F+D  I  KT    N  ++ F+H                GG+
Sbjct: 556  VTVRKSLVNLEDDDILSNFEDAKIGMKT----NATVEKFVH----------------GGV 595

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
            +V     L   +  TE+    V D  S Y             GQ V  K+L+I+   +  
Sbjct: 596  IVSFFGSLRAFLPKTEISETFVDDA-SKY----------LKLGQVVNVKILDINEDQK-- 642

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM-IVQGYVKNVTSKGCFI 1396
              + ++L+          SS LST   T      +I +L P + +VQ  V    +    I
Sbjct: 643  -RLVVTLKQ---------SSQLSTSQKT------EIANLIPGISVVQAVVVEKKNDSVLI 686

Query: 1397 MLS-RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
             L    L   V    LSDG  E      K+  I   +   +L  +  ++ V  T K S  
Sbjct: 687  ELEGSNLRGVVHDGQLSDGNYEQNRALFKKTEINSKLEVLILEKDFKARTVIATAKKSLI 746

Query: 1453 RTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFI 1486
              + + ++  +  ++    I+ G +K V + GLF+
Sbjct: 747  EASKRKQLPTDFDDVQPNKIIKGYVKSVTNLGLFV 781


>gi|145251307|ref|XP_001397167.1| rRNA biogenesis protein RRP5 [Aspergillus niger CBS 513.88]
 gi|134082698|emb|CAK42591.1| unnamed protein product [Aspergillus niger]
          Length = 1822

 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 217/876 (24%), Positives = 373/876 (42%), Gaps = 86/876 (9%)

Query: 29  NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEA----VE 82
           NSK   N A +A +L++  DD+ P FPRGGG  LT  ER +I   A  D  FE       
Sbjct: 45  NSKPDANSAPKASELSVLRDDE-PSFPRGGGSVLTPLERKQIQIQATKDVLFEQKGSKPS 103

Query: 83  RGLHKKNKKKKKKTERKANETVDDLGSLFG------------DGISGKLPRYANKITLKN 130
            G    +  +    E   ++T                     D    K  R    +  K 
Sbjct: 104 AGDFGDDGMEDTDMEDAGDDTKSAAAKKSRKKKTKGKKDAEKDATEKKDVRIEG-LNFKR 162

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-------------- 176
           I  G  + G V+ +N  D+ + LP  L G      ++  +L+ +IE              
Sbjct: 163 IVPGTMVLGQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEEDD 221

Query: 177 -ANEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQE 232
             ++   L   F++GQ +   V+       D     +++I LS+       GLS   +  
Sbjct: 222 DEDDSLDLHKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDLVV 281

Query: 233 GMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDR 289
              + A V S+EDHG ++  GL      GF+    +  +     +K G +   +V   + 
Sbjct: 282 NSAVQASVVSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSSIKEGSVFLCMVTGQNA 341

Query: 290 TRKVVYLSSD-PDTVSKCVTKDLK-GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
              V+ LS++ P   S   +  L    +I   +PG      +  +   G+    +     
Sbjct: 342 NGSVIKLSANLPSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGMLDA 401

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH-------- 397
           TVD+     +    +    Y+   K+  R++   P++    VG +L  ++          
Sbjct: 402 TVDLVQSGGSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGGPG 461

Query: 398 --NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
             + AP     +  I  ++KVV+V+ GLG+ + I ST      +V +S +++ +V  +  
Sbjct: 462 SSDDAP----AISAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLSDGQVETISP 515

Query: 456 K---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IA 508
           +   ++  S    R++G+  ++ L     +    +       DV  G VVKGKV    I 
Sbjct: 516 ELGPFRVDSVHEGRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTLGAVVKGKVEKLLIG 575

Query: 509 VDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 565
            +   G IV    G+  L P  H ++  +  P KKF  G  +  R+L V  + ++I +T 
Sbjct: 576 ANGVDGLIVALADGITGLVPSMHFADTPLQFPEKKFHEGMTVSTRILSVNLEKRQIRLTL 635

Query: 566 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625
           KK+L+ S+ AI   Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +
Sbjct: 636 KKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQFYGPIRGFLPVSEMSEAYIKD 695

Query: 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVV 680
           PS  + +GQVV    + S+ ASR         P   +E      + +  G LVSG V   
Sbjct: 696 PSQHFRLGQVVNVHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEK 754

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
           + +  ++ +   G     +  EH+AD    + A+ + S I+ G + ++L+V+D + ++ L
Sbjct: 755 SADDTLLKLDDYGLV-ARLNVEHVADGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRL 812

Query: 739 L--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
           +  + + SL  +A+   +PS+   +   + V G++ NI   G FV FLG + G  P+   
Sbjct: 813 IKVTGRQSLKKAAKHGSIPSEIEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLV 872

Query: 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            D            GQ V + +  V+++  R  LS+
Sbjct: 873 GDENVNKPDYGMARGQVVTATVHSVDADFQRFILSM 908



 Score =  153 bits (386), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 196/880 (22%), Positives = 379/880 (43%), Gaps = 143/880 (16%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V LG++V G V+  ++  N V  ++  +A G + G +P+ H AD     T ++   K  +
Sbjct: 559  VTLGAVVKGKVEKLLIGANGVDGLIVALADGIT-GLVPSMHFAD-----TPLQFPEKKFH 612

Query: 723  E----FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            E      ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  
Sbjct: 613  EGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAV 672

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            V+F G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K       
Sbjct: 673  VQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCK------- 725

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            D     E +                   K  E    G ++ G V E +    ++  +++ 
Sbjct: 726  DPETFTEAYR------------------KAFENIHPGMLVSGTVFEKSADDTLLKLDDYG 767

Query: 899  DVYGFITHHQLAGATVESGSVI----------QAAILDVAKAERLVDLSLKTVFIDRFRE 948
             V      H   G+  +  S +          +  ++D+ +A RL+ ++           
Sbjct: 768  LVARLNVEHVADGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIKVT----------- 816

Query: 949  ANSNRQAQKKKRKREAS----KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS--- 1001
                RQ+ KK  K  +     +DL     V   +  +  N + +        IG      
Sbjct: 817  ---GRQSLKKAAKHGSIPSEIEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRL 871

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETE 1048
            V D N  K P      GQ V ATV ++            P+ +T AG           T 
Sbjct: 872  VGDENVNK-PDYGMARGQVVTATVHSVDADFQRFILSMNPAEATHAGAKKKAAAKPEPTP 930

Query: 1049 TSSS------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
            T  +      +  K  S +  G + + +I  ++  ++ ++      GRI ++EV D   +
Sbjct: 931  TDDAVANAIDEGIKSMSDFTFGRVTKCKIVSVRATQVNVQLADNIQGRIDVSEVFDKWED 990

Query: 1103 VVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIG 1151
            + +       F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   
Sbjct: 991  IKDRKQPLRFFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAAN-P 1049

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
            S L  E+  V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + 
Sbjct: 1050 SPLNLEQ--VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYP 1107

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G A+  HV +++ +K  L L  +   D +  + V +           G I+ GR++K+ 
Sbjct: 1108 VGSAMKVHVSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMILPGRVTKVT 1156

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
                 +++Q+   + G V   ++ +          D  + +P +   + + ++  V+ I 
Sbjct: 1157 ER--QVIMQLSKSIVGAVDLIDMAD----------DYTKANP-TVCQKNEVLRACVIAID 1203

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1391
            +  +    + LSLR S           LS+ +    K +  I+ L  N IV+G+V+ V  
Sbjct: 1204 KANK---KISLSLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVAD 1251

Query: 1392 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
             G F+ + R + A V +S+LSD Y++  +  F + +LV GRV   +    +++++LK S 
Sbjct: 1252 NGLFVTVGRDVTAYVRISDLSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESV 1311

Query: 1452 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                 ++ +  L +L  G +V G++++VE +G FI I+ +
Sbjct: 1312 LDPNYKAPL-TLHDLKPGQVVTGKVRKVEEFGAFIVIDGS 1350



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 178/410 (43%), Gaps = 53/410 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  ++  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSAMKVHVSA 1118

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMILPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 347  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            G VD+  + + +    PT   KN+      + A ++ +D  ++ + L+L P  + + + P
Sbjct: 1170 GAVDLIDMADDYTKANPTVCQKNEV-----LRACVIAIDKANKKISLSLRPSKVLSSSLP 1224

Query: 403  SHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
               K      Q KV  + RG        GL + +        AYV ISD+++  +++ + 
Sbjct: 1225 VQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKD 1281

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSF 512
             ++    V+ R+      +G     LK S  +       T  D+KPG VV GKV  V+ F
Sbjct: 1282 SFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEF 1341

Query: 513  GAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            GA +   G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1342 GAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 33/373 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + L+ +  G    G V  V +  L I L   +RG  R  DA D   D  + A+ +   P 
Sbjct: 1052 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP- 1107

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
               VG  +   V  +D DK         L L        L  E V  GM+L   V  + +
Sbjct: 1108 ---VGSAMKVHVSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMILPGRVTKVTE 1157

Query: 246  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDP 300
               I+     S  G +   ++A++      P +     +L+  V +ID+  K + LS  P
Sbjct: 1158 RQVIMQLS-KSIVGAVDLIDMADDY-TKANPTVCQKNEVLRACVIAIDKANKKISLSLRP 1215

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   V+ + +NG+ ++     T  V I  L +++
Sbjct: 1216 SKVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDVTAYVRISDLSDSY 1275

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQS 414
                WK+ +   + V  R+   D     + ++L   +L  + +AP +   +K G +    
Sbjct: 1276 -LKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVV-TG 1333

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHL 473
            KV +V+     ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  
Sbjct: 1334 KVRKVEEFGAFIVIDGSKNISGLCHR--SEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391

Query: 474  EGLATGILKASAF 486
            E ++ G LKAS F
Sbjct: 1392 EKISFG-LKASYF 1403



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 120/277 (43%), Gaps = 38/277 (13%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG ++   +T++   ++ ++      G + + ++ DD +     +       + + A +I
Sbjct: 1144 VGMILPGRVTKVTERQVIMQLSKSIVGAVDLIDMADDYTKANPTVCQK---NEVLRACVI 1200

Query: 1123 A--KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
            A  K+NK          LS++PS +  S   +  K +     + +   V G+V +V +  
Sbjct: 1201 AIDKANKK-------ISLSLRPSKVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNG 1253

Query: 1179 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
              +T+ R + A + I D     S L+E++  F + + V G V   + E+  L++ L+   
Sbjct: 1254 LFVTVGRDVTAYVRISD--LSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLK--- 1308

Query: 1239 DGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                 ++V   N      +H+   G +V G++ K+      +V+    ++ G  H +E+ 
Sbjct: 1309 -----ESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEFGAFIVIDGSKNISGLCHRSEMA 1363

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
               V D  + Y+EG             VK K+L+I R
Sbjct: 1364 ENRVEDARTLYEEGDA-----------VKAKILKIDR 1389


>gi|403217806|emb|CCK72299.1| hypothetical protein KNAG_0J02180 [Kazachstania naganishii CBS 8797]
          Length = 1704

 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 292/1273 (22%), Positives = 555/1273 (43%), Gaps = 168/1273 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKK--KKKKTERKANETVDDLGSLF 111
            FPRGG  +L+  E  ++  E  ++   V  G +K + +  + KK ++ + +  D  G L 
Sbjct: 38   FPRGGASALSPLELKQVANEAASD---VLFGNNKTSTEVSRPKKKKKTSIKDKDAAGELN 94

Query: 112  GDG-ISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA------ 164
             D  +  +     + I+ +++  G  L G V+E+N+ D+ +    G+ G           
Sbjct: 95   EDAALEDEKLSVVHHISFRSLKVGSSLIGQVSEINKNDICVTFSDGISGFVNLTHISEQF 154

Query: 165  ----DALDPILDNEIE-----------ANEDNLLPTI---FHVGQLVSCIVL---QLDDD 203
                + LD  +D++ E           A E   LP +   F +GQ + C VL    L   
Sbjct: 155  THILEELDENMDSDEEKESEYESDNEKAAEAKELPDLKNYFKLGQWLRCNVLTNNALTTK 214

Query: 204  KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR 263
             K   KR+I L++  S +    + E + +   +   VKS+EDHG  L  G+   TGF+ +
Sbjct: 215  SKNNKKRRIELTIEPSYV-NTFTEEDLVKSAPVQCSVKSVEDHGATLDVGVVGITGFISK 273

Query: 264  NNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPG 322
             ++  + G+   PG +  G V    +T +VV ++ D  +    +T+    IS +D LVPG
Sbjct: 274  KDIGSSLGL--LPGAVFLGNVYK--QTERVVNINLDFSSKKNKITQ----ISNVDALVPG 325

Query: 323  MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL--FV 380
            M +    ++I  +G++        G +   HL   F   + K+ +     +  R+L   +
Sbjct: 326  MSLDLLCKAITPSGIVGKCFGLVNGFISSAHL-GVFKEDDMKHKFAIGSNIQCRVLATLI 384

Query: 381  DPTSRAVGL-TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            +  S  V L +L P +   R  P+ +K  + ++   +       G   +          Y
Sbjct: 385  NNESEKVALLSLIPNI--ERLEPT-LKCTEAFEAFPI-------GYNFETTKVKGRDSEY 434

Query: 440  VTISDVAEEEVRKLEK----KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
            + ++ V ++ V ++ K    +      ++ +++G+  ++ +                  D
Sbjct: 435  LYLA-VDDDRVGRVHKSRIGELDSTDNLKAKVMGYDIVDNMYELATDPKILALKYVRSKD 493

Query: 496  VKPGMVVKGKVI-AVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            +K G ++   ++ AV   G  ++   G  V  + PL H+S+  +V P +KFK+G ++  R
Sbjct: 494  IKIGELLTTCIVNAVSEKGIELKIFNGQFVATVSPL-HISDTRLVYPERKFKIGGKVKAR 552

Query: 553  VLGVKSK-RITVTHKKTLV---KSKLAILSSYAEA-TDRLITHGWITKIE---KHGCFVR 604
            +L V ++ RI  T KK+LV   + +  I+SSY  A T +      +  +E   K GC V 
Sbjct: 553  ILNVDNRGRIYATMKKSLVNLEQDETPIISSYEIAKTAKEKNEKTLATVEVFRKTGCIVS 612

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE- 663
            F+ GV+GF P +E+      +P     +GQ V  R++       RI  +  +   +  E 
Sbjct: 613  FFGGVRGFLPNAEISEVFVKKPEQHLRLGQTVVVRLLKVDAEDSRILATCKVSNAQAQEQ 672

Query: 664  ----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
                + LV   S+++  V   T +A+++  + K   +G +   HL+D  +E        I
Sbjct: 673  KETIEQLVPGRSMINVTVVEKTKDALIIE-MDKVELRGVLQVGHLSDSRIEQNRADFKKI 731

Query: 719  KPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQ--QLP---SDASHIHPNSVVHGYVCN 771
              G    + LV+D E+   +  ++ K SLI +A+  +LP   SD   +  ++ + GYV +
Sbjct: 732  AIGTHL-RGLVIDKETRTQVFNMTLKKSLIEAAEKEELPTSYSDIKAVSKDTPLCGYVKS 790

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            I + G F+ F G+  G    S AV+ +  D+SKT+++ QSV + +L  + E  R  L+LK
Sbjct: 791  ISDKGLFIAFNGKFVGLVLPSYAVESRDVDISKTFFINQSVSAYLLRSDDENERFLLTLK 850

Query: 832  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG--KVHESNDFG 889
                 S            +++ A  + +    + +K +  + IG +++G  K  + N   
Sbjct: 851  APKIESK-----------KKEPASDEVTNPIDNSIKKLSDYTIGKIVKGTIKAVKKNQLN 899

Query: 890  VVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVA---------- 928
            ++++ + H         D Y  I + +   +  ++GS+I+A I+   D+           
Sbjct: 900  IILADDLHGRIDVSEVYDNYSDILNTKAPLSQFKNGSIIEAKIVGNHDIKSHKFLPITHQ 959

Query: 929  -KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 987
             K   +++LS+K   +     +  NR          + KD+ +   +   V     N+L 
Sbjct: 960  IKKGTVLELSIKPSVL----SSEDNRPL--------SLKDISIGDELVGFVNNYSLNFLW 1007

Query: 988  LSL-PEYNHSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI 1044
            L++ P     +    +++      K  +  F  G ++   V A+ S+             
Sbjct: 1008 LTISPILKAKLSMFDLTEDGLELSKNIEDNFPLGSAIPVKVTAIDSTHEFA--------- 1058

Query: 1045 SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV 1104
              T T  S   K   S  V  ++ A I +I    L L  G    G +  T+  D  S  +
Sbjct: 1059 --TVTGRSHVVKDFDSIAVNDVIPARIGKIFENFLLLDLGNSITGLVFATDALDSFSTSL 1116

Query: 1105 ENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
               + + K+ + V+A+++A  K NK  +  S   E S  P++ + S           D+ 
Sbjct: 1117 NEAYGD-KVNRIVSAKVVAIDKKNKK-INLSLRSEASKVPTVTSYS-----------DLK 1163

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
             G  V G V  V+++   + +SR ++A  F+  S    + L+++++ +   + V G V+ 
Sbjct: 1164 QGDIVHGLVKTVNDKGIFVYLSRTVEA--FVPISKLSDAYLKDWKKFYKPMQHVIGKVVK 1221

Query: 1223 INKEKKLLRLVLR 1235
               +K +L + LR
Sbjct: 1222 SEDDKHIL-ITLR 1233



 Score =  136 bits (343), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 188/756 (24%), Positives = 315/756 (41%), Gaps = 124/756 (16%)

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            +TGC V F G + GF P ++  +       +   +GQ+V   +L V++E  RI      +
Sbjct: 606  KTGCIVSFFGGVRGFLPNAEISEVFVKKPEQHLRLGQTVVVRLLKVDAEDSRIL-----A 660

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             C  ++A   ++    +E I  L   +               S+I   V E     +++ 
Sbjct: 661  TCKVSNAQAQEQ----KETIEQLVPGR---------------SMINVTVVEKTKDALIIE 701

Query: 894  FEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFI 943
             ++  ++ G +    L+ + +E           G+ ++  ++D     ++ +++LK   I
Sbjct: 702  MDK-VELRGVLQVGHLSDSRIEQNRADFKKIAIGTHLRGLVIDKETRTQVFNMTLKKSLI 760

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVLSLPEYNHSIG 998
            +    A            +  SKD  +   V +I +          ++ L LP Y     
Sbjct: 761  E---AAEKEELPTSYSDIKAVSKDTPLCGYVKSISDKGLFIAFNGKFVGLVLPSYAVESR 817

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA-----------ISET 1047
               +S         K F   QSV A +  L S     R LL LKA             E 
Sbjct: 818  DVDIS---------KTFFINQSVSAYL--LRSDDENERFLLTLKAPKIESKKKEPASDEV 866

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
                    KK S Y +G +V+  I  +K  +L +      HGRI ++EV D+ S+++   
Sbjct: 867  TNPIDNSIKKLSDYTIGKIVKGTIKAVKKNQLNIILADDLHGRIDVSEVYDNYSDILNTK 926

Query: 1108 --FSNFKIGQTVTARIIA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLF 1156
               S FK G  + A+I+     KS+K       +KK  + ELSIKPS+L+ SE    L  
Sbjct: 927  APLSQFKNGSIIEAKIVGNHDIKSHKFLPITHQIKKGTVLELSIKPSVLS-SEDNRPLSL 985

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKA 1215
            +  D+SIG  + G+V      +  LTIS  LKA+L + D   +  EL +  +  F +G A
Sbjct: 986  K--DISIGDELVGFVNNYSLNFLWLTISPILKAKLSMFDLTEDGLELSKNIEDNFPLGSA 1043

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V +I+   +   +       G S    D  +      I   D++  RI KI     
Sbjct: 1044 IPVKVTAIDSTHEFATVT------GRSHVVKDFDS------IAVNDVIPARIGKIFENF- 1090

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
             L++ +G  + G V  T        D L  +     +   G    + V  KV+ I +  +
Sbjct: 1091 -LLLDLGNSITGLVFAT--------DALDSF-STSLNEAYGDKVNRIVSAKVVAIDKKNK 1140

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                + LSLRS    + +  S                  DL    IV G VK V  KG F
Sbjct: 1141 ---KINLSLRSEASKVPTVTS----------------YSDLKQGDIVHGLVKTVNDKGIF 1181

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            + LSR ++A V +S LSD Y++  +K +   + V G+V+  E   K + +TL+ S+    
Sbjct: 1182 VYLSRTVEAFVPISKLSDAYLKDWKKFYKPMQHVIGKVVKSED-DKHILITLRESEV-NG 1239

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                + N  ++ VG++  G +K +  +G+FI ++NT
Sbjct: 1240 DLKVLKNYDDIKVGEVFKGSVKNITDFGVFIKLDNT 1275



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 164/402 (40%), Gaps = 30/402 (7%)

Query: 456  KYKEGSCVRVRILGFRHLEG---------LATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
            ++K GS +  +I+G   ++          +  G +   + +  V +  D +P + +K   
Sbjct: 931  QFKNGSIIEAKIVGNHDIKSHKFLPITHQIKKGTVLELSIKPSVLSSEDNRP-LSLKDIS 989

Query: 507  IAVDSFGAIVQFPGGVKALCPLP----HMSEFEIVKPGKKFKVGAELVF---RVLGVKSK 559
            I  +  G +  +      L   P     +S F++ + G +     E  F     + VK  
Sbjct: 990  IGDELVGFVNNYSLNFLWLTISPILKAKLSMFDLTEDGLELSKNIEDNFPLGSAIPVKVT 1049

Query: 560  RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG--FAPRSE 617
             I  TH+   V  +  ++  +       +    I KI ++   +   N + G  FA  + 
Sbjct: 1050 AIDSTHEFATVTGRSHVVKDFDSIAVNDVIPARIGKIFENFLLLDLGNSITGLVFATDAL 1109

Query: 618  LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLV 673
                     +    V ++V  ++++    +++INLS   +    PT  S  DL K G +V
Sbjct: 1110 DSFSTSLNEAYGDKVNRIVSAKVVAIDKKNKKINLSLRSEASKVPTVTSYSDL-KQGDIV 1168

Query: 674  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
             G+V  V    + VY+      +  +P   L+D   +    K   KP       +V   +
Sbjct: 1169 HGLVKTVNDKGIFVYL--SRTVEAFVPISKLSD--AYLKDWKKFYKPMQHVIGKVVKSED 1224

Query: 734  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF--LGRLTGFAPR 791
              ++L++ + S +N   ++  +   I    V  G V NI + G F++      +TG A  
Sbjct: 1225 DKHILITLRESEVNGDLKVLKNYDDIKVGEVFKGSVKNITDFGVFIKLDNTANVTGLAHI 1284

Query: 792  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            S+  D    D+S  +  G  V++ +L  NS   +++LSLK S
Sbjct: 1285 SEIADSTPNDISSLFGPGDKVKAIVLKTNSAKKQLSLSLKAS 1326


>gi|353236542|emb|CCA68534.1| related to RRP5-processing of pre-ribosomal RNA [Piriformospora
           indica DSM 11827]
          Length = 1501

 Score =  170 bits (431), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 202/769 (26%), Positives = 328/769 (42%), Gaps = 102/769 (13%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           +A++  +S  +   D  K  K   N  K S ++      A+ LA  P   V V       
Sbjct: 36  VASAPTQSSSRVKPDYGKLTKKMSNVDKTSPER------AKKLATRPAKRVAVASLFKTR 89

Query: 61  S--LTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGK 118
           S  L ++ R+E   E D++         KKNKK+ +  + K+       G L  + +  K
Sbjct: 90  STFLEEKLREEAIREADSQIFKESTSSLKKNKKRSRDGKSKS-------GDLDEEDLQNK 142

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADAL- 167
                  ++ K +  G ++ G V  +    +V+ LP  + G          + +A D L 
Sbjct: 143 DSLRIQHLSYKKLLPGTRILGQVIAILPFSIVLSLPHQMVGHVPVDKVSHIVNKAMDELG 202

Query: 168 DPILDNEIEANEDNL------------LPTIFHVGQLVSCIV-----------------L 198
           D   +N+ +  E++             L  +F +GQ V  +V                 +
Sbjct: 203 DDGSENDADEEENSTSDEEEKISRIATLEDMFTIGQYVLAVVTAVHPQGVVFTPASGASV 262

Query: 199 QLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
            L   + E+ +  R++ LSL       GLS + + +G VL A + S+ED+GY L F + +
Sbjct: 263 DLGKPQNELDRASRRLELSLLPQQFNAGLSGKDLIKGQVLPAVITSVEDYGYTLDFAIAN 322

Query: 257 FTGFLP-----RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL 311
            +GFLP     +++ ++    ++K G  L   V  ++   +V  +       SK    +L
Sbjct: 323 ISGFLPFQHADQDDNSQEVPHNMKIGTWLATTVVKMEDNGRVCNVG----IGSKVPKAEL 378

Query: 312 KGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
             + S   + PG +V   +      G+ +  L  F+GT+   H+     +T         
Sbjct: 379 STLPSASAVHPGCLVKAMITESAPEGLNVQVLGLFSGTIHPLHVSPGAASTA------VG 432

Query: 371 KKVNARILF----VDPTSRAVG-----LTLNPYLLH--NRAPPSH-----VKVGDIYDQS 414
           KK+ ARIL+     +PT  A+      L+L P LL   N    S        +G I D  
Sbjct: 433 KKIKARILWDIPGTEPTQFALSTLPHILSLRPRLLTSPNDGEESQDLQAVFPIGTILDAV 492

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFR 471
           KV RVD    L L +    + T   V ISDVA+E V  L      YK G+  R R++G  
Sbjct: 493 KVARVDTDRSLFLQVAEGLLGT---VHISDVADEHVASLPDSSGPYKVGTVQRARVIGHN 549

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 531
            L+G     +K S          D++ G +VKG VI+++  G  V   G V A+    H 
Sbjct: 550 PLDGTLRCSMKESVLSQKWLKADDIQVGSLVKGTVISLNEKGLFVSLSGNVHAIVWPNHY 609

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
           ++  +  P +KF+VG  +  RVL V     RIT+T KKTL++S L I+S+        +T
Sbjct: 610 ADIPLKHPERKFRVGKLIKCRVLVVDPAQNRITLTAKKTLMESTLPIISAIETNLVNAVT 669

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM-----SSI 644
           H  + KI +    V FYN V+G  P  E     G      + +GQVVK RI+     + I
Sbjct: 670 HAIVFKISERVLTVEFYNNVRGIIPYKEALETLGQNLDQAFKIGQVVKVRIIEVKLEAGI 729

Query: 645 PASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
             +  I  +  + P++     + ++G  VSG V  +    V + +   G
Sbjct: 730 LVASIIKANSPVGPSKQDILAMTEIGQSVSGTVSDIHKEHVAITLQPSG 778



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 133/547 (24%), Positives = 234/547 (42%), Gaps = 76/547 (13%)

Query: 965  SKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIAT 1024
            + D+ V   V   V  + E  L +SL    H+I + +       K P+++F  G+ +   
Sbjct: 571  ADDIQVGSLVKGTVISLNEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKCR 630

Query: 1025 VMAL-PSSS----TAGRLLL--LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 1077
            V+ + P+ +    TA + L+   L  IS  ET+            V ++  A + +I   
Sbjct: 631  VLVVDPAQNRITLTAKKTLMESTLPIISAIETNL-----------VNAVTHAIVFKISER 679

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1137
             L ++F     G I   E  +    + +NL   FKIGQ V  RII              E
Sbjct: 680  VLTVEFYNNVRGIIPYKEALE---TLGQNLDQAFKIGQVVKVRII--------------E 722

Query: 1138 LSIKPSMLTVSEI--GSKLLFEECDV----SIGQRVTGYVYKVDNEWALLTI--SRHLKA 1189
            + ++  +L  S I   S +   + D+     IGQ V+G V  +  E   +T+  S  L  
Sbjct: 723  VKLEAGILVASIIKANSPVGPSKQDILAMTEIGQSVSGTVSDIHKEHVAITLQPSGALAL 782

Query: 1190 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDI 1248
                  +    + + + +    IG  +   V+ S N EK L+ +V++P      D + ++
Sbjct: 783  LTLNNLANARDTSIAQLRSSLKIGDDLRDLVIVSKNSEKGLVIVVVKP-----KDNSKNM 837

Query: 1249 SNDNMQTFIHEGDIVGGRISKIL--SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
             N N      E   +G R++ ++      G V+++   LYG +H TE+ +   + P    
Sbjct: 838  FNLNDPNLKLENLQLGQRVTGVVLKHSKKGAVIKMSKRLYGCLHLTEISDDYSTHP---- 893

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
               +  P+        V   V  + +T R    ++LS+R SL           S+ VD  
Sbjct: 894  ---KLPPIDS-----VVTAAVANVDKTHR---LLDLSIRPSL-----LEPQTQSSIVDP- 936

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
               +    +L     V+G+V  V   G F+ LS  LDAK+ + +L D Y +  +  F   
Sbjct: 937  --RIRSFAELRIGQKVRGFVTEVVDFGVFVALSPSLDAKIPVKHLFDVYNKDWKGSFTPD 994

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            ++V GR+L +     + E+TL++ +    S +    LS+   G  V G I+ +  YG+FI
Sbjct: 995  QMVEGRILRINVDKNQAEMTLRSGE--ITSLATNVTLSDFSKGQRVDGVIQNIAEYGVFI 1052

Query: 1487 TIENTNL 1493
             I+ +++
Sbjct: 1053 QIKGSDI 1059



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 132/606 (21%), Positives = 231/606 (38%), Gaps = 116/606 (19%)

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTP 682
            S  Y VG V + R++   P    +  S  MK + +S+     D +++GSLV G V  ++ 
Sbjct: 532  SGPYKVGTVQRARVIGHNPLDGTLRCS--MKESVLSQKWLKADDIQVGSLVKGTV--ISL 587

Query: 683  NAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
            N   ++V   G     +   H AD    H E    +  +IK      ++LV+D   + + 
Sbjct: 588  NEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKC-----RVLVVDPAQNRIT 642

Query: 739  LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            L+AK +L+ S   + S       N+V H  V  I E    V F   + G  P  +A++  
Sbjct: 643  LTAKKTLMESTLPIISAIETNLVNAVTHAIVFKISERVLTVEFYNNVRGIIPYKEALETL 702

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSL----------KQSCCSSTD--------- 839
              +L + + +GQ V+  I++V  E G +  S+          KQ   + T+         
Sbjct: 703  GQNLDQAFKIGQVVKVRIIEVKLEAGILVASIIKANSPVGPSKQDILAMTEIGQSVSGTV 762

Query: 840  ASFMQEHFLL--------------------EEKIAMLQSSKHNGSELKWV--------EG 871
            +   +EH  +                    +  IA L+SS   G +L+ +        +G
Sbjct: 763  SDIHKEHVAITLQPSGALALLTLNNLANARDTSIAQLRSSLKIGDDLRDLVIVSKNSEKG 822

Query: 872  FIIGSVIEGKVHESNDFGV------VVSFEEHSDVYGFITHHQLAGATVESG-------- 917
             +I  V++ K +  N F +      + + +    V G +  H   GA ++          
Sbjct: 823  LVI-VVVKPKDNSKNMFNLNDPNLKLENLQLGQRVTGVVLKHSKKGAVIKMSKRLYGCLH 881

Query: 918  ------------------SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 959
                              SV+ AA+ +V K  RL+DLS++   ++         Q+    
Sbjct: 882  LTEISDDYSTHPKLPPIDSVVTAAVANVDKTHRLLDLSIRPSLLE------PQTQSSIVD 935

Query: 960  RKREASKDLGVHQTVNAIV-EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 1018
             +  +  +L + Q V   V E+V     V   P  +  I    + D   + + +  F   
Sbjct: 936  PRIRSFAELRIGQKVRGFVTEVVDFGVFVALSPSLDAKIPVKHLFDVYNKDW-KGSFTPD 994

Query: 1019 QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 1078
            Q V   ++ +        + L    I+   T+ +      S +  G  V   I  I    
Sbjct: 995  QMVEGRILRINVDKNQAEMTLRSGEITSLATNVT-----LSDFSKGQRVDGVIQNIAEYG 1049

Query: 1079 LRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1137
            + ++  G    G  H +E+ D      + +   FK G  V A II+     D +K  L  
Sbjct: 1050 VFIQIKGSDIKGLCHRSELADPNGPSADEMLKTFKKGDVVRALIISV----DAEKKRLG- 1104

Query: 1138 LSIKPS 1143
             S+KPS
Sbjct: 1105 FSLKPS 1110



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 48/79 (60%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            K +D+    +V+G V ++  KG F+ LS  + A V  ++ +D  ++ PE++F +GKL+  
Sbjct: 570  KADDIQVGSLVKGTVISLNEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKC 629

Query: 1432 RVLSVEPLSKRVEVTLKTS 1450
            RVL V+P   R+ +T K +
Sbjct: 630  RVLVVDPAQNRITLTAKKT 648



 Score = 40.0 bits (92), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 146/370 (39%), Gaps = 37/370 (10%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKP-GKKFKVGAELVFR 552
           D+  G V+   + +V+ +G  + F    +    P  H  + +  +      K+G  L   
Sbjct: 295 DLIKGQVLPAVITSVEDYGYTLDFAIANISGFLPFQHADQDDNSQEVPHNMKIGTWLATT 354

Query: 553 VLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           V+ ++   +   V     + K++L+ L S +      +    IT+    G  V+      
Sbjct: 355 VVKMEDNGRVCNVGIGSKVPKAELSTLPSASAVHPGCLVKAMITESAPEGLNVQVLGLFS 414

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-------- 662
           G      L + PG   ++   VG+ +K RI+  IP +     +    P  +S        
Sbjct: 415 GTI--HPLHVSPGAASTA---VGKKIKARILWDIPGTEPTQFALSTLPHILSLRPRLLTS 469

Query: 663 ------EDDL---VKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
                   DL     +G+++  V V  V  +  +   +A+G   GT+    +AD  EH  
Sbjct: 470 PNDGEESQDLQAVFPIGTILDAVKVARVDTDRSLFLQVAEGLL-GTVHISDVAD--EHVA 526

Query: 713 VMKSVIKP----GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
            +     P      +  +++  +     L  S K S++ S + L +D   I   S+V G 
Sbjct: 527 SLPDSSGPYKVGTVQRARVIGHNPLDGTLRCSMKESVL-SQKWLKAD--DIQVGSLVKGT 583

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V ++ E G FV   G +      +   D       + + VG+ ++  +L V+    RITL
Sbjct: 584 VISLNEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKCRVLVVDPAQNRITL 643

Query: 829 SLKQSCCSST 838
           + K++   ST
Sbjct: 644 TAKKTLMEST 653


>gi|388580414|gb|EIM20729.1| hypothetical protein WALSEDRAFT_69646 [Wallemia sebi CBS 633.66]
          Length = 1098

 Score =  170 bits (431), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 151/586 (25%), Positives = 270/586 (46%), Gaps = 62/586 (10%)

Query: 134 GMKLWGVVAEVNEKDLVICLPGGLRG-----------LARAADALDPILDN----EIEAN 178
           G+K+   +  +   DL++ LP  L               R   A++   D+      + N
Sbjct: 109 GLKVLCQIVHITAIDLIVSLPEQLLAHIPITNISTHFTQRLDSAMNDDSDDGKSVSDDGN 168

Query: 179 ED-NLLPTIFHVGQLVSCIVLQLDDD------KKE-----IGKRKIWLSLRLSLLYKGLS 226
           ED   L  +F VGQ +   VL +  D      KKE        RK+ LS+    +  GL+
Sbjct: 169 EDLPELDELFQVGQWLRATVLHVHKDSNTGRVKKEGEEIIKASRKLELSIDPRSVNDGLT 228

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
            + +++   +   V+S+EDHGY++  G+P   GF+    + + SG D +    L G V S
Sbjct: 229 QKDLEKDFTIVGAVRSVEDHGYLVDLGVPDVDGFVSTTEM-DASGFDKE----LAGQVGS 283

Query: 287 I------DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
           I       ++ KVV LS +P T +K    +    +++ ++PG++++  V ++L  G+ + 
Sbjct: 284 ILPLTVTSKSNKVVNLSPNPSTFAKSYMNEAN--TLESVIPGVVLNAMVTAVLPAGLNVK 341

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLHN 398
           F  +F GT+   H+   +   +    +   KKV AR++F  PTS  +   L+L P++++ 
Sbjct: 342 FFGFFDGTISKEHI--PYEKKSLSERFPVGKKVKARVIFDHPTSNPKRFSLSLLPHIVNL 399

Query: 399 RAPPSH-----------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           +   +               G I +  +V+ V+   GL + IP + +    +V IS +A+
Sbjct: 400 QNSLTEKSEDGLTIAEAFGKGRIIEGVQVITVESEKGLYVTIPDSEL--LGFVHISQIAD 457

Query: 448 EEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           +    L       K GS    R++G  +++ +    +K S  E      SD + G +V G
Sbjct: 458 DHTPSLSSSSGATKVGSLHTARVVGLSYVDKIVQLSIKPSVLEKSFMKVSDAEVGAIVDG 517

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRIT 562
            V  +      +   G V A+    H S+ ++  P KK++   ++  R+L  ++   R+T
Sbjct: 518 IVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDMKVKARILTAEADKNRVT 577

Query: 563 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
            T KK+LVKS L I++SY  +   +IT+  ++ I++ G  V FYN V+ F P  E+    
Sbjct: 578 ATLKKSLVKSDLPIITSYDASNKNVITYATVSGIKEKGAIVDFYNNVRAFLPVGEISESY 637

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
                    VGQ+VK  I+     ++R+  S      +   + L+K
Sbjct: 638 TKHAKDALEVGQIVKVIIVKVEAEAKRMMASIRKTVPKEEREALIK 683



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            K   K+ D     IV G VK +     FI +S  +DA V  ++ SD  ++ PEK++    
Sbjct: 501  KSFMKVSDAEVGAIVDGIVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDM 560

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTS 1450
             V  R+L+ E    RV  TLK S
Sbjct: 561  KVKARILTAEADKNRVTATLKKS 583



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 157/398 (39%), Gaps = 55/398 (13%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           A ++     T   V PG+V+   V AV   G  V+F G         H+  +E     ++
Sbjct: 307 AKSYMNEANTLESVIPGVVLNAMVTAVLPAGLNVKFFGFFDGTISKEHIP-YEKKSLSER 365

Query: 543 FKVGAELVFRVL----GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           F VG ++  RV+        KR +++    L+   + + +S  E ++  +T   I +   
Sbjct: 366 FPVGKKVKARVIFDHPTSNPKRFSLS----LLPHIVNLQNSLTEKSEDGLT---IAEAFG 418

Query: 599 HGCFVRFYNGVQGFAPRSELGLD---PGCEPSSMYHVGQVVKCRIMS-----------SI 644
            G   R   GVQ     SE GL    P  E     H+ Q+      S           S+
Sbjct: 419 KG---RIIEGVQVITVESEKGLYVTIPDSELLGFVHISQIADDHTPSLSSSSGATKVGSL 475

Query: 645 PASRRINLSFMMKPTRVS------EDDLVKL-----GSLVSGVVDVVTPNAVVVYVIAKG 693
             +R + LS++ K  ++S      E   +K+     G++V G+V  +  + + + +   G
Sbjct: 476 HTARVVGLSYVDKIVQLSIKPSVLEKSFMKVSDAEVGAIVDGIVKKIADDRMFISI--SG 533

Query: 694 YSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLIN 747
                +   H +D  L+H        +  Y  D     ++L  + + + +  + K SL+ 
Sbjct: 534 NVDAIVWPTHYSDVKLKHP-------EKKYRSDMKVKARILTAEADKNRVTATLKKSLVK 586

Query: 748 SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
           S   + +     + N + +  V  I E G  V F   +  F P  +  +           
Sbjct: 587 SDLPIITSYDASNKNVITYATVSGIKEKGAIVDFYNNVRAFLPVGEISESYTKHAKDALE 646

Query: 808 VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
           VGQ V+  I+ V +E  R+  S++++       + ++E
Sbjct: 647 VGQIVKVIIVKVEAEAKRMMASIRKTVPKEEREALIKE 684



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 167/434 (38%), Gaps = 45/434 (10%)

Query: 441 TISDVAEEEVRKLEKKYKEGSCVRVRIL--------GFRHLEG---------LATGILKA 483
           ++SD   E++ +L++ ++ G  +R  +L        G    EG         L   I   
Sbjct: 162 SVSDDGNEDLPELDELFQVGQWLRATVLHVHKDSNTGRVKKEGEEIIKASRKLELSIDPR 221

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
           S  +GL  T  D++    + G V +V+  G +V    GV  +      +E +     K+ 
Sbjct: 222 SVNDGL--TQKDLEKDFTIVGAVRSVEDHGYLVDL--GVPDVDGFVSTTEMDASGFDKEL 277

Query: 544 --KVGAELVFRVLGVKSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
             +VG+ L   V    +K + ++ +  T  KS +   ++       ++ +  +T +   G
Sbjct: 278 AGQVGSILPLTVTSKSNKVVNLSPNPSTFAKSYMNEANTLESVIPGVVLNAMVTAVLPAG 337

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-- 658
             V+F+    G   +  +  +     S  + VG+ VK R++   P S     S  + P  
Sbjct: 338 LNVKFFGFFDGTISKEHIPYEKKS-LSERFPVGKKVKARVIFDHPTSNPKRFSLSLLPHI 396

Query: 659 -------TRVSEDDLV-----KLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLA 705
                  T  SED L        G ++ GV  +   +   +YV I      G +    +A
Sbjct: 397 VNLQNSLTEKSEDGLTIAEAFGKGRIIEGVQVITVESEKGLYVTIPDSELLGFVHISQIA 456

Query: 706 D-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
           D H    +      K G      +V L      + LS K S++  +    SDA      +
Sbjct: 457 DDHTPSLSSSSGATKVGSLHTARVVGLSYVDKIVQLSIKPSVLEKSFMKVSDA---EVGA 513

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           +V G V  I +   F+   G +      +   D +     K Y     V++ IL   ++ 
Sbjct: 514 IVDGIVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDMKVKARILTAEADK 573

Query: 824 GRITLSLKQSCCSS 837
            R+T +LK+S   S
Sbjct: 574 NRVTATLKKSLVKS 587



 Score = 40.8 bits (94), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            G +HI+++ DD +  + +     K+G   TAR++  S         + +LSIKPS+L   
Sbjct: 448  GFVHISQIADDHTPSLSSSSGATKVGSLHTARVVGLSYVDK-----IVQLSIKPSVL--- 499

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
                K   +  D  +G  V G V K+ ++   ++IS ++ A   +  + Y   +L+  ++
Sbjct: 500  ---EKSFMKVSDAEVGAIVDGIVKKIADDRMFISISGNVDA--IVWPTHYSDVKLKHPEK 554

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            ++     V   +L+   +K  +   L+
Sbjct: 555  KYRSDMKVKARILTAEADKNRVTATLK 581


>gi|350636490|gb|EHA24850.1| hypothetical protein ASPNIDRAFT_48843 [Aspergillus niger ATCC 1015]
          Length = 1822

 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 217/876 (24%), Positives = 372/876 (42%), Gaps = 86/876 (9%)

Query: 29  NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEA----VE 82
           NSK   N A +A +L++  DD+ P FPRGGG  LT  ER +I   A  D  FE       
Sbjct: 45  NSKPDANSAPKASELSVLRDDE-PSFPRGGGSVLTPLERKQIQIQATKDVLFEQKGSKPS 103

Query: 83  RGLHKKNKKKKKKTERKANETVDDLGSLFG------------DGISGKLPRYANKITLKN 130
            G    +  +    E   ++T                     D    K  R    +  K 
Sbjct: 104 AGDFGDDGMEDTDMEDAGDDTKSAAAKKSRKKKTKGKKDAEKDATEKKDVRIEG-LNFKR 162

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-------------- 176
           I  G  + G V+ +N  D+ + LP  L G      ++  +L+ +IE              
Sbjct: 163 IVPGTMVLGQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEEDD 221

Query: 177 -ANEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQE 232
             ++   L   F++GQ +   V+       D     +++I LS+       GLS   +  
Sbjct: 222 DEDDSLDLHKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDLVV 281

Query: 233 GMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDR 289
              + A V S+EDHG ++  GL      GF+    +  +     +K G +   +V   + 
Sbjct: 282 NSAVQASVVSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSSIKEGSVFLCMVTGQNA 341

Query: 290 TRKVVYLSSD-PDTVSKCVTKDLK-GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
              V+ LS++ P   S   +  L    +I   +PG      +  +   G+    +     
Sbjct: 342 NGSVIKLSANLPSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGMLDA 401

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH-------- 397
           TVD+     +    +    Y+   K+  R++   P++    VG +L  ++          
Sbjct: 402 TVDLVQSGGSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGGPG 461

Query: 398 --NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
             + AP     +  I  ++KVV+V+ GLG+ + I ST      +V +S +++ +V  +  
Sbjct: 462 SSDDAP----AISAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLSDGQVETISP 515

Query: 456 K---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IA 508
           +   ++  S    R++G+  ++ L     +    +       DV  G VVKGKV    I 
Sbjct: 516 ELGPFRVDSVHEGRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTLGAVVKGKVEKLLIG 575

Query: 509 VDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 565
            +   G IV    G+  L P  H ++  +  P KKF  G  +  R+L V  + ++I +T 
Sbjct: 576 ANGVDGLIVALADGITGLVPSMHFADTPLQFPEKKFHEGMTVSTRILSVNLEKRQIRLTL 635

Query: 566 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625
           KK+L+ S+ AI   Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +
Sbjct: 636 KKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQFYGPIRGFLPVSEMSEAYIKD 695

Query: 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVV 680
           PS  + +GQVV    + S+ ASR         P   +E      + +  G LVSG V   
Sbjct: 696 PSQHFRLGQVVNVHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEK 754

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
           + +  ++ +   G     +  EH+AD    + A+ + S I+ G + ++L+V+D + ++ L
Sbjct: 755 SADDTLLKLDDYGLV-ARLNVEHVADGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRL 812

Query: 739 L--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
           +  + + SL  +A+   +PS    +   + V G++ NI   G FV FLG + G  P+   
Sbjct: 813 IKVTGRQSLKKAAKHGSIPSKIEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLV 872

Query: 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            D            GQ V + +  V+++  R  LS+
Sbjct: 873 GDENVNKPDYGMARGQVVTATVHSVDADFQRFILSM 908



 Score =  153 bits (386), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 196/880 (22%), Positives = 379/880 (43%), Gaps = 143/880 (16%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V LG++V G V+  ++  N V  ++  +A G + G +P+ H AD     T ++   K  +
Sbjct: 559  VTLGAVVKGKVEKLLIGANGVDGLIVALADGIT-GLVPSMHFAD-----TPLQFPEKKFH 612

Query: 723  E----FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            E      ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  
Sbjct: 613  EGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAV 672

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            V+F G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K       
Sbjct: 673  VQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCK------- 725

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            D     E +                   K  E    G ++ G V E +    ++  +++ 
Sbjct: 726  DPETFTEAYR------------------KAFENIHPGMLVSGTVFEKSADDTLLKLDDYG 767

Query: 899  DVYGFITHHQLAGATVESGSVI----------QAAILDVAKAERLVDLSLKTVFIDRFRE 948
             V      H   G+  +  S +          +  ++D+ +A RL+ ++           
Sbjct: 768  LVARLNVEHVADGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIKVT----------- 816

Query: 949  ANSNRQAQKKKRKREAS----KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS--- 1001
                RQ+ KK  K  +     +DL     V   +  +  N + +        IG      
Sbjct: 817  ---GRQSLKKAAKHGSIPSKIEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRL 871

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETE 1048
            V D N  K P      GQ V ATV ++            P+ +T AG           T 
Sbjct: 872  VGDENVNK-PDYGMARGQVVTATVHSVDADFQRFILSMNPAEATHAGAKKKAAAKPEPTP 930

Query: 1049 TSSS------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
            T  +      +  K  S +  G + + +I  ++  ++ ++      GRI ++EV D   +
Sbjct: 931  TDDAVANAIDEGIKSMSDFTFGRVTKCKIVSVRATQVNVQLADNIQGRIDVSEVFDKWED 990

Query: 1103 VVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIG 1151
            + +       F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   
Sbjct: 991  IKDRKQPLRFFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAAN-P 1049

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
            S L  E+  V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + 
Sbjct: 1050 SPLNLEQ--VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYP 1107

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G A+  HV +++ +K  L L  +   D +  + V +           G I+ GR++K+ 
Sbjct: 1108 VGSAMKVHVSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMILPGRVTKVT 1156

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
                 +++Q+   + G V   ++ +          D  + +P +   + + ++  V+ I 
Sbjct: 1157 ER--QVIMQLSKSIVGAVDLIDMAD----------DYTKANP-TVCQKNEVLRACVIAID 1203

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1391
            +  +    + LSLR S           LS+ +    K +  I+ L  N IV+G+V+ V  
Sbjct: 1204 KANK---KISLSLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVAD 1251

Query: 1392 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
             G F+ + R + A V +S+LSD Y++  +  F + +LV GRV   +    +++++LK S 
Sbjct: 1252 NGLFVTVGRDVTAYVRISDLSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESV 1311

Query: 1452 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                 ++ +  L +L  G +V G++++VE +G FI I+ +
Sbjct: 1312 LDPNYKAPL-TLHDLKPGQVVTGKVRKVEEFGAFIVIDGS 1350



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 178/410 (43%), Gaps = 53/410 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  ++  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSAMKVHVSA 1118

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMILPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 347  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            G VD+  + + +    PT   KN+      + A ++ +D  ++ + L+L P  + + + P
Sbjct: 1170 GAVDLIDMADDYTKANPTVCQKNEV-----LRACVIAIDKANKKISLSLRPSKVLSSSLP 1224

Query: 403  SHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
               K      Q KV  + RG        GL + +        AYV ISD+++  +++ + 
Sbjct: 1225 VQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKD 1281

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSF 512
             ++    V+ R+      +G     LK S  +       T  D+KPG VV GKV  V+ F
Sbjct: 1282 SFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEF 1341

Query: 513  GAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            GA +   G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1342 GAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 33/373 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + L+ +  G    G V  V +  L I L   +RG  R  DA D   D  + A+ +   P 
Sbjct: 1052 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP- 1107

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
               VG  +   V  +D DK         L L        L  E V  GM+L   V  + +
Sbjct: 1108 ---VGSAMKVHVSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMILPGRVTKVTE 1157

Query: 246  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDP 300
               I+     S  G +   ++A++      P +     +L+  V +ID+  K + LS  P
Sbjct: 1158 RQVIMQLS-KSIVGAVDLIDMADDY-TKANPTVCQKNEVLRACVIAIDKANKKISLSLRP 1215

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   V+ + +NG+ ++     T  V I  L +++
Sbjct: 1216 SKVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDVTAYVRISDLSDSY 1275

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQS 414
                WK+ +   + V  R+   D     + ++L   +L  + +AP +   +K G +    
Sbjct: 1276 -LKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVV-TG 1333

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHL 473
            KV +V+     ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  
Sbjct: 1334 KVRKVEEFGAFIVIDGSKNISGLCHR--SEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391

Query: 474  EGLATGILKASAF 486
            E ++ G LKAS F
Sbjct: 1392 EKISFG-LKASYF 1403



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 120/277 (43%), Gaps = 38/277 (13%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG ++   +T++   ++ ++      G + + ++ DD +     +       + + A +I
Sbjct: 1144 VGMILPGRVTKVTERQVIMQLSKSIVGAVDLIDMADDYTKANPTVCQK---NEVLRACVI 1200

Query: 1123 A--KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
            A  K+NK          LS++PS +  S   +  K +     + +   V G+V +V +  
Sbjct: 1201 AIDKANKK-------ISLSLRPSKVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNG 1253

Query: 1179 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
              +T+ R + A + I D     S L+E++  F + + V G V   + E+  L++ L+   
Sbjct: 1254 LFVTVGRDVTAYVRISD--LSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLK--- 1308

Query: 1239 DGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                 ++V   N      +H+   G +V G++ K+      +V+    ++ G  H +E+ 
Sbjct: 1309 -----ESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEFGAFIVIDGSKNISGLCHRSEMA 1363

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
               V D  + Y+EG             VK K+L+I R
Sbjct: 1364 ENRVEDARTLYEEGDA-----------VKAKILKIDR 1389


>gi|410076380|ref|XP_003955772.1| hypothetical protein KAFR_0B03400 [Kazachstania africana CBS 2517]
 gi|372462355|emb|CCF56637.1| hypothetical protein KAFR_0B03400 [Kazachstania africana CBS 2517]
          Length = 1715

 Score =  169 bits (429), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 201/772 (26%), Positives = 341/772 (44%), Gaps = 92/772 (11%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL----------- 171
           +  K +  G  L G V+++   D+ I    G+ G   L R +D    IL           
Sbjct: 114 LNFKTLKVGSSLLGQVSKITRGDICITCSDGISGYVNLTRISDQFTTILEDLDDDMESDD 173

Query: 172 ----DNEIEANEDNL--------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIW 213
               D E + ++D          LP +   F +GQ + C ++    L+   K+  KR+I 
Sbjct: 174 ETKNDEEYDLSDDEEGKERKAAELPDLNDYFKLGQWLRCSIVSNSTLEPKSKQNNKRRIE 233

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
            ++  +L+   +S E +Q+ M L   VKSIEDHG IL  G+   TGF+ + ++     + 
Sbjct: 234 FTIEPTLV-NAMSEEDLQKFMPLQCAVKSIEDHGAILDIGIDGMTGFITKKDVPNFDKLL 292

Query: 274 VKPGLLLQGVVRSIDRTRKV-VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
           V   + L  V +  +R+  V +  ++  + +S+         S+D +VPG +V    Q +
Sbjct: 293 V-GSVFLGNVYKKTERSVNVNLDFANKKNIISQIS-------SVDAIVPGQLVDLLCQQV 344

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL--FVDPT-SRAVGL 389
            + G+         G +   HL   F     K+ +     V ARIL   +D    + + L
Sbjct: 345 SQYGISGKVFGLVPGFIGSSHLLK-FKEEELKHSFAIGSNVRARILASLIDGNGDKTLIL 403

Query: 390 TLNPYL------LHNRAPPSHVKVGDIYDQSKVVRVDRG-LGLLLDIPSTPVSTPAYVTI 442
           +  P++      L   +      +G I++ S V   D   L L LD             +
Sbjct: 404 STLPHIQSLETDLKEISALDAFPIGYIFENSIVKGRDSDYLYLALDEDR----------L 453

Query: 443 SDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG-MV 501
             V   ++ KLE        +R R+LG+  ++ +    +  +  +       D+  G ++
Sbjct: 454 GKVHRSKIGKLESI----DNLRARVLGYNSVDKIYELAVDPNVLKMQYIRTKDIPAGELL 509

Query: 502 VKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK- 559
              ++  V S G  ++   G   A  P  H+S+  +V P +KFK+G+++  RVL V  + 
Sbjct: 510 AACEIETVSSSGIQLKILNGQFTASVPPLHISDTRLVYPERKFKIGSKVKGRVLTVDQRG 569

Query: 560 RITVTHKKTLVK---SKLAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           R+ +T KK+LV     +  I+SS+A A     +   T   +      GC V F+ G++GF
Sbjct: 570 RVFMTLKKSLVNIDTEETPIVSSFALAQEVKNNNKKTVATVQSFRPSGCVVSFFGGIRGF 629

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
            P +E+       P     +GQ V  +++       RI  S  +   +  E   V + +L
Sbjct: 630 LPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARILTSCKISSEQSQEQKDV-ITNL 688

Query: 673 VSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 725
           V G   +DVV    T ++++V +   G  +G I   HL+D  +E        I  G EF+
Sbjct: 689 VPGKTFIDVVAVEKTKDSIIVEMSKTGL-RGVIYVGHLSDSRIEQNRAALKKITIGAEFN 747

Query: 726 QLLVLDNESSNLL-LSAKYSLINSAQQ--LPSDASHIHPNS---VVHGYVCNIIETGCFV 779
            L++  +  + +  L+ K SLI +A+   LP+  S I   S    + GYV +I   G FV
Sbjct: 748 GLVIDKDVRTQVFNLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGVFV 807

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            F G+  G    S AVD +  D+SK +YV QSV + +L  + +  R  L+LK
Sbjct: 808 AFNGKFVGLVLPSYAVDSRDIDISKIFYVNQSVTAYLLRTDDKNERFLLTLK 859



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 191/770 (24%), Positives = 323/770 (41%), Gaps = 155/770 (20%)

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            +GC V F G + GF P ++  +       +   +GQ+V   +L V+ E  RI      SC
Sbjct: 616  SGCVVSFFGGIRGFLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARIL----TSC 671

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              S++ S  Q+                           +I +++ GK      F  VV+ 
Sbjct: 672  KISSEQSQEQKD--------------------------VITNLVPGKT-----FIDVVAV 700

Query: 895  EEHSD----------VYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLV 934
            E+  D          + G I    L+ + +E           G+     ++D     ++ 
Sbjct: 701  EKTKDSIIVEMSKTGLRGVIYVGHLSDSRIEQNRAALKKITIGAEFNGLVIDKDVRTQVF 760

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV--NAIVEIVKENYLVLSLPE 992
            +L+LK   I   +      Q  + K   +A    G  +++  N +       ++ L LP 
Sbjct: 761  NLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGVFVAFNGKFVGLVLPS 820

Query: 993  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
            Y        +S         K F   QSV A +  L +     R LL LKA  E      
Sbjct: 821  YAVDSRDIDIS---------KIFYVNQSVTAYL--LRTDDKNERFLLTLKAQKE------ 863

Query: 1053 KRAKKKSSYDV----------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            + AKK +S ++                G +V A+I  +K  +L +      HGR+ + E+
Sbjct: 864  ETAKKTTSSEIVNPIDPAIQSLNDLTTGKVVSAKIKSVKKNQLNIVIADNIHGRVDVAEI 923

Query: 1097 NDDKSNVVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSML 1145
             DD  ++ +     S FK  QTV  +II   N    K         K  + ELS+KPS+L
Sbjct: 924  FDDLKDIKDRKQPLSAFKKDQTVKVKIIGYHNIKSHKFLPITHQVSKGSVLELSMKPSLL 983

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
               +  SK + E   +++G+ + GYV  +  +N W  LTIS  LKA+L + D A + +EL
Sbjct: 984  NSEDTFSKTIKE---INVGEELVGYVNNFASNNLW--LTISPVLKARLSVFDLAGDNTEL 1038

Query: 1204 QE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1262
             E  +  F +G A+   V SI+ E   +          +++K   + + N    I  G+ 
Sbjct: 1039 SENVEDSFPLGSAIPVKVTSIDSEHGFI---------TVANKYHTMKDINS---IKVGES 1086

Query: 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTE-LKNICVSDPLSGYDEGQFDPLSGYDEGQ 1321
            +  RI+KI      +++ +G  L G    T+ L +  V+   + +D+            Q
Sbjct: 1087 LPARIAKIFEKY--ILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKV----------NQ 1134

Query: 1322 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1381
             V   ++ +    +    V LSLR+               D  TP   +   +DL    I
Sbjct: 1135 IVMATIVSLDVDSK---KVNLSLRTK--------------DAKTPT--ITSHDDLKKGDI 1175

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V   VK+V+ KG F+ LSR L+A V ++ LSD Y++  +K +   + V G+V+  +    
Sbjct: 1176 VHALVKSVSDKGIFLHLSRTLEAFVPVTMLSDSYLKEWKKFYKSMQHVVGKVVKCDE-DA 1234

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            R+ +TL+ S+        + N  ++ VGD+V G +K V  +G+F+ ++NT
Sbjct: 1235 RILITLRESEV-NGELKVLKNYDDIEVGDVVSGSVKNVTDFGVFVKLDNT 1283



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 13/262 (4%)

Query: 593  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH--VGQVVKCRIMSSIPASRRI 650
            I KI +    +   N + G A  ++   D        +H  V Q+V   I+S    S+++
Sbjct: 1091 IAKIFEKYILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKVNQIVMATIVSLDVDSKKV 1150

Query: 651  NLSFMMK----PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            NLS   K    PT  S DDL K G +V  +V  V+   + +++      +  +P   L+D
Sbjct: 1151 NLSLRTKDAKTPTITSHDDLKK-GDIVHALVKSVSDKGIFLHL--SRTLEAFVPVTMLSD 1207

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 766
               +    K   K        +V  +E + +L++ + S +N   ++  +   I    VV 
Sbjct: 1208 S--YLKEWKKFYKSMQHVVGKVVKCDEDARILITLRESEVNGELKVLKNYDDIEVGDVVS 1265

Query: 767  GYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
            G V N+ + G FV+      ++G A  S+  D +  D+S  +  G  V++ +L  N E  
Sbjct: 1266 GSVKNVTDFGVFVKLDNTVNVSGLAHISEIADKKPEDISALFGPGDRVKTIVLKTNPEKK 1325

Query: 825  RITLSLKQSCCSSTDASFMQEH 846
            +++LSLK S  ++      +EH
Sbjct: 1326 QLSLSLKASRFTTAQVENEEEH 1347



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 113/512 (22%), Positives = 212/512 (41%), Gaps = 82/512 (16%)

Query: 967  DLGVHQTVNAIVEIVKENYLVLSLPEYNH-----SIGYASVSDYNTQKFPQKQFLNGQSV 1021
            DL   + V+A ++ VK+N L + + +  H     +  +  + D   +K P   F   Q+V
Sbjct: 887  DLTTGKVVSAKIKSVKKNQLNIVIADNIHGRVDVAEIFDDLKDIKDRKQPLSAFKKDQTV 946

Query: 1022 IATVMA---------LPSS---STAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLVQ 1068
               ++          LP +   S    L L +K ++  +E + SK  K+    +VG  + 
Sbjct: 947  KVKIIGYHNIKSHKFLPITHQVSKGSVLELSMKPSLLNSEDTFSKTIKE---INVGEELV 1003

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
              +       L L        R+ + ++  D + + EN+  +F +G  +  ++ +     
Sbjct: 1004 GYVNNFASNNLWLTISPVLKARLSVFDLAGDNTELSENVEDSFPLGSAIPVKVTS----I 1059

Query: 1129 DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1188
            D +  F+   ++     T+ +I S        + +G+ +   + K+  ++ LL +   L 
Sbjct: 1060 DSEHGFI---TVANKYHTMKDINS--------IKVGESLPARIAKIFEKYILLDLGNKLT 1108

Query: 1189 AQLFILDSAYEPSELQEFQRRFH--IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
               F  D+  + S     Q  FH  + + V   ++S++ + K + L LR  +D    KT 
Sbjct: 1109 GMAFATDALDDFS--VTLQDAFHDKVNQIVMATIVSLDVDSKKVNLSLRT-KDA---KTP 1162

Query: 1247 DI-SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1305
             I S+D+++    +GDIV   +  +     G+ + +   L   V  T L +  + +    
Sbjct: 1163 TITSHDDLK----KGDIVHALVKSVSDK--GIFLHLSRTLEAFVPVTMLSDSYLKEWKKF 1216

Query: 1306 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1365
            Y   Q      +  G+ VKC   E +R +       ++LR S              +V+ 
Sbjct: 1217 YKSMQ------HVVGKVVKCD--EDARIL-------ITLRES--------------EVNG 1247

Query: 1366 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL--LSNLSDGYVESPEKEF 1423
              K L+  +D+    +V G VKNVT  G F+ L   ++   L  +S ++D   E     F
Sbjct: 1248 ELKVLKNYDDIEVGDVVSGSVKNVTDFGVFVKLDNTVNVSGLAHISEIADKKPEDISALF 1307

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
              G  V   VL   P  K++ ++LK S   TA
Sbjct: 1308 GPGDRVKTIVLKTNPEKKQLSLSLKASRFTTA 1339



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 23/155 (14%)

Query: 123  ANKI-TLKNISA---GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN 178
            ANK  T+K+I++   G  L   +A++ EK +++ L   L G+A A DALD          
Sbjct: 1069 ANKYHTMKDINSIKVGESLPARIAKIFEKYILLDLGNKLTGMAFATDALDDF-------- 1120

Query: 179  EDNLLPTIFH--VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG--LSLETVQEGM 234
                L   FH  V Q+V   ++ LD D K     K+ LSLR          S + +++G 
Sbjct: 1121 -SVTLQDAFHDKVNQIVMATIVSLDVDSK-----KVNLSLRTKDAKTPTITSHDDLKKGD 1174

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 269
            ++ A VKS+ D G  LH    +   F+P   L+++
Sbjct: 1175 IVHALVKSVSDKGIFLHLS-RTLEAFVPVTMLSDS 1208


>gi|401626228|gb|EJS44184.1| rrp5p [Saccharomyces arboricola H-6]
          Length = 1726

 Score =  169 bits (427), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 290/1275 (22%), Positives = 540/1275 (42%), Gaps = 177/1275 (13%)

Query: 119  LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---- 171
            L  + N  TLKN   G  L G ++ + ++DL I    G+ G   L   +D    IL    
Sbjct: 110  LVEHVNFKTLKN---GSSLLGQISGITKQDLCITFTDGISGYVNLTHISDVFTSILEDLD 166

Query: 172  ------------------DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ--- 199
                              D E E+++D        N LP +   FH+GQ + C V++   
Sbjct: 167  EDMDSDAETADKTKSKGDDTEYESSDDEDEKNDKSNDLPNLKKYFHIGQWLRCSVIKNTF 226

Query: 200  LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG 259
            L+   K+  K++I L++  S +    S E + +   +   +KSIEDHG IL  GLP FTG
Sbjct: 227  LEPATKKTKKKRIELTIEPSFV-NTYSDEDLVKSTSIQCAIKSIEDHGAILDVGLPDFTG 285

Query: 260  FLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL 318
            F+ + +++    +   PG +  G + +  DR+  V    SD       ++      SID 
Sbjct: 286  FIAKKDISNFENL--LPGAVFLGNITKKSDRSIVVNTNFSDKKNRITQIS------SIDA 337

Query: 319  LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            ++PG +V    ++I +NGV        +G +++ HL+ +F   + K+ +     +  RI+
Sbjct: 338  VIPGQIVDLLCETITKNGVSGKAFGLVSGVINVSHLR-SFSEEDLKHKFAIGSSIRCRII 396

Query: 379  FVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV---- 434
                             L N+   S  KV  +     ++R++  L     + + P+    
Sbjct: 397  ---------------ACLENK---SGDKVLILSTLPHILRLEDSLKSTEGLDAFPIGYTF 438

Query: 435  ---------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
                     S   Y+ + D     V    V ++E   K  S    R+LG+  ++ +    
Sbjct: 439  ESCAVKGRDSDYLYLALDDDRLGKVHSSRVGEIENPEKLSS----RVLGYSPVDDIYQLS 494

Query: 481  LKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVK 538
                  +      +D+  G +    ++ +V S G  ++ F G  KA  P  H+S+  +V 
Sbjct: 495  TDPKYLKLKYLRTNDIPIGELAPSCEITSVSSSGIELKIFNGQFKANVPALHISDTRLVY 554

Query: 539  PGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITH 590
            P +KFK+G+++  R+L V  +  + +T KK+LV     +  ++S+Y  A +       T 
Sbjct: 555  PERKFKIGSKVKGRILSVNLRGNVHMTLKKSLVNIEADESPLVSNYESAKEIKEKNEKTL 614

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
              +   + +GC + F+ G+ GF P SE+      +P     +GQ V  +++      RRI
Sbjct: 615  ATVQVFKPNGCVISFFGGLSGFLPNSEISEVFVKKPEEHLRLGQTVVVKLLDVDADRRRI 674

Query: 651  NLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
              +  +   + ++     +++V   +L++  V   T  +V+V +      +G I   HL+
Sbjct: 675  IATCKVSNEQAAQQKDTIENIVPGRTLITVSVIEKTKESVIVEIPGVNL-RGVIYAGHLS 733

Query: 706  D-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASH 758
            D  +E        I+ G E   L++  D  +    ++ K SLI  A++  LP    D  +
Sbjct: 734  DARIEQNRAQLKKIRIGAELTGLVIDKDTRTRVFNMTLKSSLIKDAKKKTLPLTYDDVKN 793

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            I  +  +H Y+ +I + G FV F G+  G    S AVD +  D++KT+Y+ QSV   +L 
Sbjct: 794  IKKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDINKTFYINQSVTVYLLR 853

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
             + +  +  LSLK            +E   +E  I     S  + S   W +   IGSV+
Sbjct: 854  TDDQNQKFLLSLKA-------PKVKEEKKQVESNI----ESPIDSSIKTW-DDISIGSVV 901

Query: 879  EGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL--- 925
            + K+   + N   V+++   H         D Y  I   +   +  +   VIQ  I+   
Sbjct: 902  KAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEIKDKKQPLSHYKKDDVIQVKIIGNH 961

Query: 926  DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENY 985
            DV K+ + + ++ +         +    + + K+   +  +++ V + +   V     N+
Sbjct: 962  DV-KSHKFLPITHRISKASILELSMKPLELKSKETHTKTLEEIKVGEELTGFVNNSSGNH 1020

Query: 986  LVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKA 1043
            L L++ P     I    +++ +T +F +    N +SV     AL    ++       + A
Sbjct: 1021 LWLTISPVLKARISLLDLTENDT-RFSE----NVESVFPLGSALQVKVASVDHEHGFINA 1075

Query: 1044 ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV 1103
            I +T           S+  V   +   +  +    + L  G    G   IT+  DD S  
Sbjct: 1076 IGKTHVDVD-----MSTIKVADELPGRVLNVAEKYVLLDLGNKVTGISFITDALDDFSIS 1130

Query: 1104 VENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
            ++  F + KI   +   ++A  N  + K     ELS++ +      I S       DV  
Sbjct: 1131 LKEAFQD-KINNVIPTTVLA-VNAENKK----IELSLRSATPKSRSINS-----HNDVKQ 1179

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G +  V+++   + +S+ ++A  F+  +    S L+E+++ +   + V G V++ 
Sbjct: 1180 GDIVDGIIKNVNDKGIFVYLSKKVEA--FVPVTKLSDSYLKEWKKFYKPMQYVVGKVVTC 1237

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            +++ + + L LR      S+   D+      + I  GDI  G +  +     G+ V++  
Sbjct: 1238 SEDSR-ISLTLRE-----SEVNGDLKVLKSYSDIKAGDIFDGTVKNVTD--FGVFVKLDN 1289

Query: 1284 --HLYGRVHFTELKN 1296
              +  G  H TE+ +
Sbjct: 1290 TVNATGLAHVTEIAD 1304



 Score =  129 bits (325), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 211/847 (24%), Positives = 358/847 (42%), Gaps = 134/847 (15%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K  +P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 533  IFNGQFKANVPALHISD--TRLVYPERKFKIGSKVKGRILSVNLRGNVHMTLKKSLVNIE 590

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            A + P       A  I   N      V      GC + F G L+GF P S+  +      
Sbjct: 591  ADESPLVSNYESAKEIKEKNEKTLATVQVFKPNGCVISFFGGLSGFLPNSEISEVFVKKP 650

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C  ++    Q+   +E  +         
Sbjct: 651  EEHLRLGQTVVVKLLDVDADRRRII-----ATCKVSNEQAAQQKDTIENIVP-------- 697

Query: 863  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------ 916
            G  L      I  SVIE K  ES    V+V      ++ G I    L+ A +E       
Sbjct: 698  GRTL------ITVSVIE-KTKES----VIVEIP-GVNLRGVIYAGHLSDARIEQNRAQLK 745

Query: 917  ----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
                G+ +   ++D     R+ +++LK+  I   ++A            +   KD+ +H 
Sbjct: 746  KIRIGAELTGLVIDKDTRTRVFNMTLKSSLI---KDAKKKTLPLTYDDVKNIKKDVPMHA 802

Query: 973  TVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 1027
             + +I +    V  N  ++ L LP Y  ++    + D N      K F   QSV  TV  
Sbjct: 803  YIKSISDKGLFVAFNGKFIGLVLPSY--AVDSRDI-DIN------KTFYINQSV--TVYL 851

Query: 1028 LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD----------VGSLVQAEITEIKPL 1077
            L +     + LL LKA    E      +  +S  D          +GS+V+A+I  +K  
Sbjct: 852  LRTDDQNQKFLLSLKAPKVKEEKKQVESNIESPIDSSIKTWDDISIGSVVKAKIKSVKKN 911

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK---- 1127
            +L +      HGR+ I EV D    + +     S++K    +  +II     KS+K    
Sbjct: 912  QLNVILAANLHGRVDIAEVFDTYEEIKDKKQPLSHYKKDDVIQVKIIGNHDVKSHKFLPI 971

Query: 1128 -PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1186
               + K+ + ELS+KP  L   E  +K L E   + +G+ +TG+V         LTIS  
Sbjct: 972  THRISKASILELSMKPLELKSKETHTKTLEE---IKVGEELTGFVNNSSGNHLWLTISPV 1028

Query: 1187 LKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1245
            LKA++ +LD     +   E  +  F +G A+   V S++ E          F + I    
Sbjct: 1029 LKARISLLDLTENDTRFSENVESVFPLGSALQVKVASVDHE--------HGFINAIGKTH 1080

Query: 1246 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE-LKNICVSDPLS 1304
            VD+   +M T I   D + GR+  +      +++ +G  + G    T+ L +  +S    
Sbjct: 1081 VDV---DMST-IKVADELPGRVLNVAEKY--VLLDLGNKVTGISFITDALDDFSIS---- 1130

Query: 1305 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1364
               E   D ++       +   VL ++   +    +ELSLRS+     S NS +      
Sbjct: 1131 -LKEAFQDKINN-----VIPTTVLAVNAENK---KIELSLRSATPKSRSINSHN------ 1175

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1424
                      D+    IV G +KNV  KG F+ LS+K++A V ++ LSD Y++  +K + 
Sbjct: 1176 ----------DVKQGDIVDGIIKNVNDKGIFVYLSKKVEAFVPVTKLSDSYLKEWKKFYK 1225

Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1484
              + V G+V++    S R+ +TL+ S+        + + S++  GDI  G +K V  +G+
Sbjct: 1226 PMQYVVGKVVTCSEDS-RISLTLRESEV-NGDLKVLKSYSDIKAGDIFDGTVKNVTDFGV 1283

Query: 1485 FITIENT 1491
            F+ ++NT
Sbjct: 1284 FVKLDNT 1290



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 44/294 (14%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA--YEPSELQEFQRRFHIGKAVTG 1218
            + +   + G V  V  ++ LL +   +    FI D+   +  S  + FQ +  I   +  
Sbjct: 1088 IKVADELPGRVLNVAEKYVLLDLGNKVTGISFITDALDDFSISLKEAFQDK--INNVIPT 1145

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             VL++N E K + L LR        ++++  ND     + +GDIV G I  +     G+ 
Sbjct: 1146 TVLAVNAENKKIELSLRSATP--KSRSINSHND-----VKQGDIVDGIIKNV--NDKGIF 1196

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V +   +   V  T+L     SD      +  + P+      Q+V  KV+  S   R   
Sbjct: 1197 VYLSKKVEAFVPVTKL-----SDSYLKEWKKFYKPM------QYVVGKVVTCSEDSR--- 1242

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             + L+LR S              +V+   K L+   D+    I  G VKNVT  G F+ L
Sbjct: 1243 -ISLTLRES--------------EVNGDLKVLKSYSDIKAGDIFDGTVKNVTDFGVFVKL 1287

Query: 1399 SRKLDAKVL--LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
               ++A  L  ++ ++D   E     F +G  V   VL   P  K++ ++LK S
Sbjct: 1288 DNTVNATGLAHVTEIADKKPEDLSVLFGVGDRVKAIVLKTNPEKKQISLSLKAS 1341



 Score = 41.6 bits (96), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 38/246 (15%)

Query: 310  DLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFLTYFTGTVDIF----------HLQNTF 358
            D+  I +   +PG +++   + +L + G  ++ +++ T  +D F           + N  
Sbjct: 1084 DMSTIKVADELPGRVLNVAEKYVLLDLGNKVTGISFITDALDDFSISLKEAFQDKINNVI 1143

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH--VKVGDIYDQSKV 416
            PTT               +L V+  ++ + L+L      +R+  SH  VK GDI D    
Sbjct: 1144 PTT---------------VLAVNAENKKIELSLRSATPKSRSINSHNDVKQGDIVDGIIK 1188

Query: 417  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
               D+G+ + L          A+V ++ +++  +++ +K YK    V  +++     +  
Sbjct: 1189 NVNDKGIFVYL-----SKKVEAFVPVTKLSDSYLKEWKKFYKPMQYVVGKVVTCSE-DSR 1242

Query: 477  ATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
             +  L+ S   G   ++ ++SD+K G +  G V  V  FG  V+    V A   L H++E
Sbjct: 1243 ISLTLRESEVNGDLKVLKSYSDIKAGDIFDGTVKNVTDFGVFVKLDNTVNA-TGLAHVTE 1301

Query: 534  FEIVKP 539
                KP
Sbjct: 1302 IADKKP 1307


>gi|383851354|ref|XP_003701198.1| PREDICTED: protein RRP5 homolog [Megachile rotundata]
          Length = 1397

 Score =  169 bits (427), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 220/940 (23%), Positives = 409/940 (43%), Gaps = 105/940 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG     ++    +       F+  E+  +KKN++K+K   +  +ET          
Sbjct: 6   FPRGGKKPQDKKSSTSL-------FKQYEKS-NKKNREKQKSGIQNKDET---------- 47

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPI 170
                +   A +++   IS G+ + G + EV + DL+I LPGGL G A+  D   +   +
Sbjct: 48  ---NLVASTAERLSYPTISEGLVVLGCIFEVTQYDLMISLPGGLIGRAQVTDISESYTNM 104

Query: 171 LDNEI-----EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
           L N I     + N+   L  ++  G  V C V  +   +K     +I LSL   L+ + L
Sbjct: 105 LQNLIKTEDTQPNDFKPLSELYSCGDYVVCYVKSIQPQEK----WQIVLSLDPKLINQNL 160

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
            +  +  G  +   + SIEDHG+++  GL +   F+P     +N+       LL    VR
Sbjct: 161 DISYLHNGSKILCNISSIEDHGFVVDTGLTNIRAFIPT---PKNNEKYFCKQLLC--TVR 215

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
            I+    +  +          VT + +  S+D L+PG      V  IL NG+ +SF +  
Sbjct: 216 EIETNENMSTVKLSTKHKHIIVTNNTEIKSLDCLMPGTKFELYVNKILSNGLYVSFGSNH 275

Query: 346 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV 405
           +G ++  +L            Y+   ++   +L++ PT +    +L    + +++    V
Sbjct: 276 SGYINQLYLDEPLA------KYSVGMEITGTLLYILPTVKFGYFSL----MVDKSRNDAV 325

Query: 406 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 465
           K+GDI D++  +  + G G+ L +    V     +  ++V   +  K+ +K+  GS  + 
Sbjct: 326 KLGDIIDEATTLFRESG-GITLQLNKNGVRGFVPLKRTNV---DYDKIIEKFIPGSKHKC 381

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKA 524
           R+L +  ++ +    ++ S  E   F+  D+KPG VV  ++I++++    V    G +  
Sbjct: 382 RVLTYSWMDAVYICTMQHSLLEQKYFSLLDLKPGDVVNIRIISINAETGFVNVQLGKING 441

Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAE 582
                H+S+  +    KK KV  E+  +VLG+ + R     T K++L+ S L +LS   +
Sbjct: 442 QVAPEHVSDAGL-SDLKKLKVDTEVEAKVLGISTARNKAYFTLKRSLLTSNLPVLSDIKD 500

Query: 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
           A      HG I +I   G  V+F+  ++G+ PR+    +   E +  Y VGQ V  +I S
Sbjct: 501 AECGSNYHGTIIQINNSGLLVKFFGDIKGWIPRNTSNKE-ASEVNWNYSVGQTVLVQIKS 559

Query: 643 SIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSKG 697
                 +I L+    PT  +  E+++  +G  V G +   +   V + +     +  S G
Sbjct: 560 VDQNLGKIILTI---PTEDKKREENVFTIGEHVEGTIIESSTQGVYLRISKNDGQDVSTG 616

Query: 698 TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY---SLINSAQQL-- 752
            +P  H++  +E A ++ S   PG     L+     S  L+L+A +       S +QL  
Sbjct: 617 FLPAGHMSPCMETAALLASKCIPGDTLSALVFATTPS--LILTATFLTDEKYRSFEQLRV 674

Query: 753 ----PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
               P     I P+ V               + +  ++G  P    V        K  ++
Sbjct: 675 GDCIPCSIKDIEPDGV---------------KVILPVSGCTPFG-FVSYSNVSHFKLLHI 718

Query: 809 GQSVRSNILDVNSETGRI--TLSLKQSCCSSTDAS-----FMQEHFLLEEKIAMLQSSKH 861
            Q + + +  +N +   I  TLSLK+      D        +    L   K+A L  +K+
Sbjct: 719 HQILFAKVFSINRKEKEINVTLSLKKVYNGLLDTYSKLIVAVDTLTLYFNKLAEL--AKN 776

Query: 862 NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQ 921
              + + +    +G  + GKV +  + G+VV+ E  +++ G ++    +G  ++ G  + 
Sbjct: 777 PFYDNRPISSVRLGQRVTGKVEKITNSGLVVALE--NNLQGIVSKDHYSG-NLKVGDTVV 833

Query: 922 AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRK 961
             ++       LV+L+LK   +    E + N+Q +  + K
Sbjct: 834 GTVMWKNYVHELVELTLKPTTMKSISE-DQNKQIEIPQEK 872


>gi|358374933|dbj|GAA91521.1| rRNA biogenesis protein RRP5 [Aspergillus kawachii IFO 4308]
          Length = 1823

 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 213/879 (24%), Positives = 369/879 (41%), Gaps = 86/879 (9%)

Query: 29  NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEA----VE 82
           N K   N A +A +L++  DD+ P FPRGGG  LT  ER +I   A  D  FE       
Sbjct: 45  NPKPDANSAPKASELSVLRDDE-PSFPRGGGSVLTPLERKQIQIQATKDVLFEQKGSKPS 103

Query: 83  RGLHKKNKKKKKKTERKANETVDDLGSLFG------------DGISGKLPRYANKITLKN 130
            G    +  +    E   ++T                     D    K  R    +  K 
Sbjct: 104 AGDFGDDGMEDTDMEDAGDDTKSAAAKKSRKKKTKGKKDTEKDATEKKDVRIEG-LNFKR 162

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-------------- 176
           +  G  + G V+ +N  D+ + LP  L G      ++  +L+ +IE              
Sbjct: 163 VVPGTMVLGQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEEDD 221

Query: 177 -ANEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQE 232
             ++   L   F++GQ +   V+       D     +++I LS+       GLS   +  
Sbjct: 222 EDDDSLDLHKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDLVV 281

Query: 233 GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDR 289
              + A V S+EDHG ++  GL      GF+    +  +     +K G +   +V   + 
Sbjct: 282 NSAVQASVVSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSTIKEGSVFLCMVTGQNA 341

Query: 290 TRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
              V+ LS++  +              +I   +PG      +  +   G+    +     
Sbjct: 342 NGSVIKLSANLQSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGMLDA 401

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH-------- 397
           TVD+     +    +    Y+   K+  R++   P++    VG +L  ++          
Sbjct: 402 TVDLVQSGGSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGGPG 461

Query: 398 --NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
             + AP     +  I  ++KVV+V+ GLG+ + I ST      +V +S +A+ +V  +  
Sbjct: 462 SSDDAP----AISAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLADGQVETISP 515

Query: 456 K---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IA 508
           +   ++  S    R++G+  ++ L     +    +       DV  G VVKGKV    I 
Sbjct: 516 ELGPFRVESVHEGRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTVGAVVKGKVEKLLIG 575

Query: 509 VDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 565
            +   G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T 
Sbjct: 576 ANGVDGLIVVLADGITGLVPSMHFADTPLQFPEKKFREGMTVSTRILSVNLEKRQIRLTL 635

Query: 566 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625
           KK+L+ S+ AI   Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +
Sbjct: 636 KKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQFYGSIRGFLPVSEMSEAYIKD 695

Query: 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVV 680
           PS  + +GQVV    + S+ ASR         P   +E      + +  G LVSG V   
Sbjct: 696 PSQHFRLGQVVNVHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEK 754

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
           + +  ++ +   G     +  EH+ D    + A+ + S I+ G + ++L+V+D + ++ L
Sbjct: 755 SADDTLLKLDDYGLV-ARLNVEHVVDGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRL 812

Query: 739 L--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
           +  + + SL  +A+   +PS    +   + V G++ NI   G FV FLG + G  P+   
Sbjct: 813 IRVTGRQSLKKAAKHGSIPSKFEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLV 872

Query: 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            D            GQ V + +  V+++  R  LS+  S
Sbjct: 873 GDENVNKPDYDMARGQVVTATVHSVDADFKRFILSMNPS 911



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 197/872 (22%), Positives = 381/872 (43%), Gaps = 127/872 (14%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G V+  ++  N V  ++ V+A G + G +P+ H AD        K   + G 
Sbjct: 559  VTVGAVVKGKVEKLLIGANGVDGLIVVLADGIT-GLVPSMHFADTPLQFPEKK--FREGM 615

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  V+F
Sbjct: 616  TVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQF 675

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K         +
Sbjct: 676  YGSIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCKDP------ET 729

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES----NDFGVVVSFEEH 897
            F + +    E I       H G         + G+V E    ++    +D+G+V      
Sbjct: 730  FTEAYRKAFENI-------HPGM-------LVSGTVFEKSADDTLLKLDDYGLVARLNVE 775

Query: 898  SDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
              V G  +      + +  G  + +  ++D+ +A RL+ ++               RQ+ 
Sbjct: 776  HVVDGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIRVT--------------GRQSL 821

Query: 957  KKKRKREA----SKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQK 1009
            KK  K  +     +DL     V   +  +  N + +        IG      V D N  K
Sbjct: 822  KKAAKHGSIPSKFEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRLVGDENVNK 879

Query: 1010 FPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETETSSS---- 1052
             P      GQ V ATV ++            PS +T AG           T T  +    
Sbjct: 880  -PDYDMARGQVVTATVHSVDADFKRFILSMNPSEATHAGAKKKAAAKPEPTPTDDAVANA 938

Query: 1053 --KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLF 1108
              +  K  S +  G + + ++  ++  ++ ++      GRI ++EV D   ++ +     
Sbjct: 939  IDEGIKSMSDFTFGRVTKCKVVSVRATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPL 998

Query: 1109 SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1159
              F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   S L  E+ 
Sbjct: 999  RFFRPKQVISARILGIHDARNHKFLPISHRTGKFPVFELSVKPSFLQAAN-PSPLNLEQ- 1056

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
             V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + +G A+  H
Sbjct: 1057 -VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYPVGSALKVH 1115

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V +++ +K  L L  +   D +  + V +           G ++ GR++K+      +++
Sbjct: 1116 VSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMVLPGRVTKVTER--QVIM 1162

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            Q+   + G V   ++ +          D  + +P + Y + + ++  V+ I +  +    
Sbjct: 1163 QLSKSIVGAVDLIDMAD----------DFSKANP-TVYQKNEVLRACVVAIDKANK---K 1208

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + LSLR S           LS+ +    K +  I+ L  N IV+G+++ V   G F+ + 
Sbjct: 1209 ISLSLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFIRRVADNGLFVTVG 1259

Query: 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
            R + A V +S+LSD Y++  +  F   +LV GRV   +    +++++LK S      ++ 
Sbjct: 1260 RDVTAYVRISDLSDSYLKEWKDSFQADQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAP 1319

Query: 1460 INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            I  L +L  G IV G++++VE +G F+ I+ +
Sbjct: 1320 I-TLHDLKPGQIVTGKVRKVEEFGAFVVIDGS 1350



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 178/406 (43%), Gaps = 45/406 (11%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQVISARILGIHDARNHKFLPISHRTGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSALKVHVSA 1118

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMVLPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  + + F   N    Y +++ + A ++ +D  ++ + L+L P  + + + P   K
Sbjct: 1170 GAVDLIDMADDFSKAN-PTVYQKNEVLRACVVAIDKANKKISLSLRPSKVLSSSLPVQDK 1228

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                  Q KV  + RG        GL + +        AYV ISD+++  +++ +  ++ 
Sbjct: 1229 EITSIKQLKVNDIVRGFIRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKDSFQA 1285

Query: 460  GSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
               V+ R+      +G     LK S  +       T  D+KPG +V GKV  V+ FGA V
Sbjct: 1286 DQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPITLHDLKPGQIVTGKVRKVEEFGAFV 1345

Query: 517  QFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
               G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1346 VIDGSKNISGLCHRSEMAEGRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 33/373 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + L+ +  G    G V  V +  L I L   +RG  R  DA D   D  + A+ +   P 
Sbjct: 1052 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP- 1107

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
               VG  +   V  +D DK         L L        L  E V  GMVL   V  + +
Sbjct: 1108 ---VGSALKVHVSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMVLPGRVTKVTE 1157

Query: 246  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDP 300
               I+     S  G +   ++A++      P +     +L+  V +ID+  K + LS  P
Sbjct: 1158 RQVIMQLS-KSIVGAVDLIDMADDFS-KANPTVYQKNEVLRACVVAIDKANKKISLSLRP 1215

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   ++ + +NG+ ++     T  V I  L +++
Sbjct: 1216 SKVLSSSLPVQDKEITSIKQLKVNDIVRGFIRRVADNGLFVTVGRDVTAYVRISDLSDSY 1275

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQS 414
                WK+ +   + V  R+   D     + ++L   +L  + +AP +   +K G I    
Sbjct: 1276 -LKEWKDSFQADQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPITLHDLKPGQIV-TG 1333

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHL 473
            KV +V+     ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  
Sbjct: 1334 KVRKVEEFGAFVVIDGSKNISGLCHR--SEMAEGRVEDARTLYEEGDAVKAKILKIDRKQ 1391

Query: 474  EGLATGILKASAF 486
            E ++ G LKAS F
Sbjct: 1392 EKISFG-LKASYF 1403



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 120/276 (43%), Gaps = 36/276 (13%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG ++   +T++   ++ ++      G + + ++ DD S     ++   ++ +      I
Sbjct: 1144 VGMVLPGRVTKVTERQVIMQLSKSIVGAVDLIDMADDFSKANPTVYQKNEVLRACVV-AI 1202

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
             K+NK          LS++PS +  S   +  K +     + +   V G++ +V +    
Sbjct: 1203 DKANKK-------ISLSLRPSKVLSSSLPVQDKEITSIKQLKVNDIVRGFIRRVADNGLF 1255

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            +T+ R + A + I D     S L+E++  F   + V G V   + E+  L++ L+     
Sbjct: 1256 VTVGRDVTAYVRISD--LSDSYLKEWKDSFQADQLVKGRVTVSDSEQGKLQMSLK----- 1308

Query: 1241 ISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
               ++V   N      +H+   G IV G++ K+      +V+    ++ G  H +E+   
Sbjct: 1309 ---ESVLDPNYKAPITLHDLKPGQIVTGKVRKVEEFGAFVVIDGSKNISGLCHRSEMA-- 1363

Query: 1298 CVSDPLSGYDEGQF-DPLSGYDEGQFVKCKVLEISR 1332
                      EG+  D  + Y+EG  VK K+L+I R
Sbjct: 1364 ----------EGRVEDARTLYEEGDAVKAKILKIDR 1389


>gi|366991363|ref|XP_003675447.1| hypothetical protein NCAS_0C00900 [Naumovozyma castellii CBS 4309]
 gi|342301312|emb|CCC69080.1| hypothetical protein NCAS_0C00900 [Naumovozyma castellii CBS 4309]
          Length = 1722

 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 285/1207 (23%), Positives = 510/1207 (42%), Gaps = 169/1207 (14%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL-------------- 171
            +  K +  G  + G ++E+++ D+ I    GL G         P +              
Sbjct: 111  VNFKTLKIGSLVLGQISEISKTDMCISFTDGLSGYVNLTHISAPFMTILEELDDDMDDDD 170

Query: 172  -------DNEIEANEDNL-----------LPTI---FHVGQLVSCIVLQ---LDDDKKEI 207
                   D E ++++D             LP++   F VGQ + C V+    L    K+ 
Sbjct: 171  ELEKKKTDEEYDSSDDEEEKEKATKDSIGLPSLENYFKVGQWLRCSVISNTALLPKDKKN 230

Query: 208  GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
             K+KI LS+  S++   L+ E +     +   VKSIEDHG +L  G+  FTGF+ + +  
Sbjct: 231  KKKKIELSIEPSVV-NTLTEEDIVRSASVQCAVKSIEDHGAMLDIGIDGFTGFISKKDYP 289

Query: 268  ENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVS 326
            E   +   PG +  G V +  DRT  +    SD       ++      S+D +VPG +V 
Sbjct: 290  EFEKL--LPGAVFLGNVTKKSDRTVTINLDFSDKKAKITHIS------SVDAVVPGQVVD 341

Query: 327  TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 386
               Q+I  NG++          +   HL+  F     K+++     +  RI+ V      
Sbjct: 342  LLCQTITNNGIVGKTFGLVPSFISTAHLR-VFKEEELKHNFAVGSNIPCRIIAV-----L 395

Query: 387  VGLTLNPYLLHNRAPPSHVK-----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 441
            +    +  LL +  P  H+K     +G++ + +        +G L+D  +       Y+ 
Sbjct: 396  INKENDKTLLLSTLP--HIKSLKNVLGEVENLTAF-----PIGHLIDSCTVKGRDSDYLY 448

Query: 442  IS-------DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
            ++       +V    + +LEK  K    ++ R+LGF  ++ L          +       
Sbjct: 449  LAMDDDRVGEVHSSRIGELEKFDK----LKARVLGFNSIDNLYELSTDPEILKLKYLRSK 504

Query: 495  DVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            D+  G V+   ++ AV S G  ++ F G  KA+ P  H+S+  +V P +KFK+G+++  R
Sbjct: 505  DIPIGEVLPNCEITAVSSKGIELKIFNGQFKAIVPPMHISDTRLVYPERKFKIGSKVKGR 564

Query: 553  VLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVR 604
            VL + ++  I VT KKTLV      + +LS++A A +       T   +T     GC V 
Sbjct: 565  VLNINNRGLIYVTLKKTLVNIEDDDIQLLSNFAIAKEIQEKNQKTVATVTAFRPSGCIVA 624

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
            F+ G+  F P +E+      +P     +GQ +  +++     + R     M+   ++S D
Sbjct: 625  FFGGMTAFLPNAEISEVFVRKPEEHLRLGQTIVVKLLKIDQENAR-----MLVTCKISND 679

Query: 665  DLVK----LGSLVSG----VVDVV--TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATV 713
               K    +  L+ G     V+VV  T ++V+V  + +   +G I   HL+D  +E    
Sbjct: 680  QAEKKKETIEKLIPGRSMVKVNVVEKTKDSVIVE-LPETSLRGVIYVGHLSDARIEQNRA 738

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPS-----DASHIHPNSVVHG 767
                I  G E   L++  +  + +  LS K SLI  A+   S     D       + +HG
Sbjct: 739  AIKKIAIGSELKGLVIDKDARTQVFNLSLKQSLIKDAKNEVSPLTYADIKSKSKTTPLHG 798

Query: 768  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            Y+ +I   G FV F G+  G    S AV+ +  D+SKT+Y+ QSV + +L  + +  R  
Sbjct: 799  YIKSISNKGLFVAFNGKFVGLVLPSYAVESRDVDISKTFYINQSVTAYLLRSDDDNERFL 858

Query: 828  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ES 885
            L+L+ +  +  D+S          K+   ++ K     +K ++ F  G V++ ++   + 
Sbjct: 859  LTLR-TPSTKDDSS----------KVTGTETLKPIDPAMKDLKDFTTGKVVKVQIKGIKK 907

Query: 886  NDFGVVVSFEEHSDV---YGFITHHQLAGAT-----VESGSVIQAAILDV--AKAERLVD 935
            N   VV++   H  +     F +   +  AT      + G++I A I+     K+ R + 
Sbjct: 908  NQLNVVLADNLHGRIDIAEVFDSFSDIKNATHPLIDFKKGNIIDAKIIGTHDIKSHRFLP 967

Query: 936  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 994
            +S   V       +    Q + K  K  +  D+ V   +   V     N L L++ P   
Sbjct: 968  ISHHAVKGSVLELSLKPSQMRSKDIKTLSISDVAVGDELTGFVNNYGSNTLWLTVSPTLK 1027

Query: 995  HSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSS----STAGRLLLLLKAISETE 1048
              I    +++    + +  +  F  G ++   V ++ +     +  GR        S TE
Sbjct: 1028 AKISLFDLAEDGLKSSEKVEDNFPLGCALPVKVTSIDTEHGVVNVTGR--------SHTE 1079

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
             S         S  VG  V + I +I    + L  G   HG   IT+  DD S  ++  +
Sbjct: 1080 ISF-------ESLKVGDNVPSRIIKIADSYVLLDLGNKIHGIAFITDALDDFSVPLKEAY 1132

Query: 1109 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1168
               +    V+A+I+  S   + KK     LS++        I S       D+S G  V 
Sbjct: 1133 KGME-NDIVSAKIV--SIDAENKKV---NLSLRTESAKTPSISS-----HTDISQGDVVH 1181

Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
            G V  + ++   + +SR + A  F+  S    + L+++++ F   + V G V++  ++ +
Sbjct: 1182 GLVKSISDKGIFVYLSRSINA--FVPVSKLSDTYLKDWKKFFKPMQYVIGKVVNAEEDSR 1239

Query: 1229 LLRLVLR 1235
            +L L LR
Sbjct: 1240 IL-LTLR 1245



 Score =  130 bits (326), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 187/753 (24%), Positives = 319/753 (42%), Gaps = 120/753 (15%)

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            +GC V F G +T F P ++  +       +   +GQ++   +L ++ E  R+ ++    C
Sbjct: 619  SGCIVAFFGGMTAFLPNAEISEVFVRKPEEHLRLGQTIVVKLLKIDQENARMLVT----C 674

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              S D                 Q+ K   +  K + G    S+++  V E     V+V  
Sbjct: 675  KISND-----------------QAEKKKETIEKLIPG---RSMVKVNVVEKTKDSVIVEL 714

Query: 895  EEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFID 944
             E S + G I    L+ A +E           GS ++  ++D     ++ +LSLK   I 
Sbjct: 715  PETS-LRGVIYVGHLSDARIEQNRAAIKKIAIGSELKGLVIDKDARTQVFNLSLKQSLIK 773

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASV 1002
              +   S       K K + +   G  ++++     V  N  ++ L LP Y        +
Sbjct: 774  DAKNEVSPLTYADIKSKSKTTPLHGYIKSISNKGLFVAFNGKFVGLVLPSYAVESRDVDI 833

Query: 1003 SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS----------- 1051
            S         K F   QSV A +  L S     R LL L+  S  + SS           
Sbjct: 834  S---------KTFYINQSVTAYL--LRSDDDNERFLLTLRTPSTKDDSSKVTGTETLKPI 882

Query: 1052 SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFS 1109
                K    +  G +V+ +I  IK  +L +      HGRI I EV D  S++    +   
Sbjct: 883  DPAMKDLKDFTTGKVVKVQIKGIKKNQLNVVLADNLHGRIDIAEVFDSFSDIKNATHPLI 942

Query: 1110 NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            +FK G  + A+II   +    +         K  + ELS+KPS +   +I +  +    D
Sbjct: 943  DFKKGNIIDAKIIGTHDIKSHRFLPISHHAVKGSVLELSLKPSQMRSKDIKTLSI---SD 999

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGH 1219
            V++G  +TG+V    +    LT+S  LKA++ + D A +  +  E  +  F +G A+   
Sbjct: 1000 VAVGDELTGFVNNYGSNTLWLTVSPTLKAKISLFDLAEDGLKSSEKVEDNFPLGCALPVK 1059

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V SI+ E  ++ +  R           +IS ++++     GD V  RI KI      +++
Sbjct: 1060 VTSIDTEHGVVNVTGRSH--------TEISFESLKV----GDNVPSRIIKIADSY--VLL 1105

Query: 1280 QIGPHLYGRVHFTE-LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
             +G  ++G    T+ L +  V  PL    +G         E   V  K++ I    +   
Sbjct: 1106 DLGNKIHGIAFITDALDDFSV--PLKEAYKGM--------ENDIVSAKIVSIDAENK--- 1152

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             V LSLR+      S +S                  D+S   +V G VK+++ KG F+ L
Sbjct: 1153 KVNLSLRTESAKTPSISSH----------------TDISQGDVVHGLVKSISDKGIFVYL 1196

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
            SR ++A V +S LSD Y++  +K F   + V G+V++ E  S R+ +TL+ S+       
Sbjct: 1197 SRSINAFVPVSKLSDTYLKDWKKFFKPMQYVIGKVVNAEEDS-RILLTLRESEV-NGDLK 1254

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
             + N  ++ V +I  G +K V  +G+F+ ++NT
Sbjct: 1255 ILKNYDDIKVNEIYNGSVKNVTDFGVFVKLDNT 1287



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 131/303 (43%), Gaps = 42/303 (13%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS-ELQEFQRRFHIGKAVTGH 1219
            + +G  V   + K+ + + LL +   +    FI D+  + S  L+E  +       V+  
Sbjct: 1085 LKVGDNVPSRIIKIADSYVLLDLGNKIHGIAFITDALDDFSVPLKEAYKGME-NDIVSAK 1143

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            ++SI+ E K + L LR      S KT  IS+    T I +GD+V G +  I     G+ V
Sbjct: 1144 IVSIDAENKKVNLSLRTE----SAKTPSISS---HTDISQGDVVHGLVKSISDK--GIFV 1194

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
             +   +   V  ++L +  + D      +  F P+      Q+V  KV+      R    
Sbjct: 1195 YLSRSINAFVPVSKLSDTYLKDW-----KKFFKPM------QYVIGKVVNAEEDSR---- 1239

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + L+LR S              +V+   K L+  +D+  N I  G VKNVT  G F+ L 
Sbjct: 1240 ILLTLRES--------------EVNGDLKILKNYDDIKVNEIYNGSVKNVTDFGVFVKLD 1285

Query: 1400 RKLDAKVLLSN--LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
              ++   L  N  ++D   E     F +G  V   VL V P  K++ ++LK S     ++
Sbjct: 1286 NTVNVTGLAHNSEIADQKPEDLASLFGVGDRVKAYVLKVNPEKKQLSLSLKASRFGNTNE 1345

Query: 1458 SEI 1460
            S++
Sbjct: 1346 SKV 1348


>gi|363754491|ref|XP_003647461.1| hypothetical protein Ecym_6262 [Eremothecium cymbalariae
           DBVPG#7215]
 gi|356891098|gb|AET40644.1| hypothetical protein Ecym_6262 [Eremothecium cymbalariae
           DBVPG#7215]
          Length = 1714

 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 214/849 (25%), Positives = 371/849 (43%), Gaps = 93/849 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANET---VDDLGSL 110
           FPRGG   LT  E  ++  E   +   V  G+ + +K + +  ++K N +    +  G++
Sbjct: 40  FPRGGASVLTPLELKQVANEAARD---VLFGVEESSKMEGRPKKKKKNSSGSMKEGAGNV 96

Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------- 159
            G   +  +  +   ++ + ++ G  + G V  +++ D+ +     LRG           
Sbjct: 97  KGSEDTTDIIEH---VSFRALTPGTLVLGQVCSISKMDICVAFTDNLRGYVPLTNISDRF 153

Query: 160 ---LARAADALDPILDNEIE----------ANEDNL----LPTI---FHVGQLVSCIVLQ 199
              L    DA++   D+E E           NE+N     LP +   F VGQ + C V +
Sbjct: 154 SSILEELDDAMESGSDSEDEDGEYDSSDERKNENNRPTAELPNLQNYFTVGQWLRCYVQK 213

Query: 200 ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
              LD   K+  K +I LS+    + + L  E + +   +   VKSIEDHG IL  G+ +
Sbjct: 214 NTALDPQHKK--KHRIELSIEPPKVNQ-LEDEDLSKNSTIQCSVKSIEDHGAILDLGIKN 270

Query: 257 FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK-CVTKDLKGIS 315
            TGF+ + +   ++ + +   + L  +V+   RT  V +     D  SK C    +   S
Sbjct: 271 ITGFISKKDFPGSNEL-LAGSVFLANIVKRSGRTVTVNF-----DFASKKCKVSQIS--S 322

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
           +D ++PG  V    Q I  +G++        G + I  LQ  F T   KN Y     +  
Sbjct: 323 VDAVIPGQTVDFLCQKITNHGIVGKAFGLVDGFLGISQLQ-CFSTDIIKNKYPVGNNIKC 381

Query: 376 RILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD--IPSTP 433
           RI+    T       L   L      P  + + D   + + ++    +G LLD  +  T 
Sbjct: 382 RIIATLTTKNGNKTILVSTL------PHVLSLNDTLLEHEALQA-FSVGYLLDSCMVETR 434

Query: 434 VSTPAYVTISD--VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVF 491
                Y+ +SD  + +  + K+      G+ ++ RI+G+  ++            E    
Sbjct: 435 DQQYFYIKLSDDRLGQVHISKIGDVLPAGN-MKARIIGYNTIDAYYQLTTDPKMLEVDYL 493

Query: 492 THSDVKPG-MVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAEL 549
              D+  G ++ K ++ +V   G  +   GG  KA  P  H+S+  +V P +KFK+G+++
Sbjct: 494 RSLDIPIGKILTKCEITSVSDKGIELNLYGGQFKAFVPPLHISDVRLVYPERKFKIGSQV 553

Query: 550 VFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYA-----EATDRLITHGWITKIEKHG 600
             RVL V  K RI  T KK+LV    S + ++SS+      EA DR  T G +   +  G
Sbjct: 554 KARVLNVDHKGRIYATLKKSLVSYDDSSIQLISSFENVKNLEADDRK-TLGTVESFKPGG 612

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
           C V     ++ F P SE+      +      +GQ V  +++      +RI +S  +  T 
Sbjct: 613 CIVSLLGNLKAFLPNSEISEAFVKKAQDHLRLGQTVMIKVLECNEDRQRIIVSCKVSSTA 672

Query: 661 VSEDDLVKLGSLVSG--VVDVVTPNAVVVYVIAKGYS---KGTIPTEHLAD-HLEHATVM 714
            S+     +  ++ G  ++DV         ++A+      +G I   HL+D  +E    +
Sbjct: 673 ASQQQEA-IEKMIVGRSIIDVTIVEKTKDSIVAESNDAGLRGVIFVGHLSDSRIEQNRAL 731

Query: 715 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LPSDASHIH---PNSVVHGY 768
              +K G     L+   D ++    ++ K SLI  A++  LP +   I     NS +HGY
Sbjct: 732 LKKLKIGTGLRGLVTDKDTKTRVFNMTCKKSLIRDAEEDLLPLNFEKIKNKDKNSPMHGY 791

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V +I E G FV F G+  G    S A + +   +SK +Y+ QSV   +L ++ E  R  L
Sbjct: 792 VKSISEKGIFVAFHGKFVGLVLPSYATESRDVGISKKFYINQSVTVYLLRIDEENERFLL 851

Query: 829 SLKQSCCSS 837
           ++K+   S+
Sbjct: 852 TMKEPKLST 860



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 185/750 (24%), Positives = 317/750 (42%), Gaps = 117/750 (15%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC V  LG L  F P S+  +           +GQ+V   +L+ N +  RI +S K    
Sbjct: 612  GCIVSLLGNLKAFLPNSEISEAFVKKAQDHLRLGQTVMIKVLECNEDRQRIIVSCK---V 668

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 893
            SST AS  QE     EK+ + +S          ++  I+    +  V ESND G+  V+ 
Sbjct: 669  SSTAASQQQEAI---EKMIVGRS---------IIDVTIVEKTKDSIVAESNDAGLRGVIF 716

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
                SD    I  ++     ++ G+ ++  + D     R+ +++ K   I   R+A  + 
Sbjct: 717  VGHLSD--SRIEQNRALLKKLKIGTGLRGLVTDKDTKTRVFNMTCKKSLI---RDAEEDL 771

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
                 ++ +   K+  +H  V +I E          ++ L LP Y        +S     
Sbjct: 772  LPLNFEKIKNKDKNSPMHGYVKSISEKGIFVAFHGKFVGLVLPSYATESRDVGIS----- 826

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK---------- 1058
                K+F   QSV  TV  L       R LL +K   E + S++K   K           
Sbjct: 827  ----KKFYINQSV--TVYLLRIDEENERFLLTMK---EPKLSTNKEEPKVVGALNPVDQN 877

Query: 1059 ----SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN---F 1111
                S Y +G L +A I  IK  +L +      HGRI ++E+ D+   + EN+ +    F
Sbjct: 878  IKYLSEYTIGRLTKARINSIKKTQLNVVLADNLHGRIDVSEIFDNFEEI-ENISTPLVPF 936

Query: 1112 KIGQTVTARII----AKSNK--PDMKKS---FLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
            K G  +  R+I    AK++K  P   ++    + ELS K S+L+        +    DV 
Sbjct: 937  KKGDIIDVRVIGFHDAKTHKFLPVSHRNGINTVLELSAKKSVLS----NEHRILSFKDVK 992

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ-EFQRRFHIGKAVTGHVL 1221
            +G  + G+V     ++  LTIS+ LKA++   + + E    + E    F +G A+   V 
Sbjct: 993  VGDSLVGFVNNFSKDFVWLTISQSLKAKIPNFELSDEGDIFKSEIDHTFPLGSALKVKVT 1052

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            S++ E + + +  R         ++ +  D     +  G  +  R+ K+ S    L++ +
Sbjct: 1053 SLDSEHRTVNVSARS-------TSITVIKD-----VEIGSTLPARVVKVSSSY--LLLDL 1098

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1341
            G  + G V F       V+D L  Y         G   G  V   V++      G   + 
Sbjct: 1099 GNKVTG-VAF-------VTDALDEYSLSLETAFEG-KVGSIVSATVVDCDV---GNNRIN 1146

Query: 1342 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1401
            LSLR            D+++  D           L    +V+G++K VT KG F+ LSR 
Sbjct: 1147 LSLRGG-----KPKDRDITSHTD-----------LKRGDVVRGFIKTVTEKGIFVYLSRS 1190

Query: 1402 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1461
            + A V +S L+D Y++  +K +   + +  +V++    S  + +T+K S+        + 
Sbjct: 1191 IQAFVPVSKLTDAYIKEWKKFYRPMQPITAKVVNCADNS-HILLTMKESEV-NGDLHILK 1248

Query: 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
              +++ VGDI  G +K V  +G+F+ + NT
Sbjct: 1249 GYNDIQVGDIFEGYVKNVTDFGVFVKLGNT 1278



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 40/293 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            DV IG  +   V KV + + LL +   +    F+ D+  E S   E      +G  V+  
Sbjct: 1075 DVEIGSTLPARVVKVSSSYLLLDLGNKVTGVAFVTDALDEYSLSLETAFEGKVGSIVSAT 1134

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V+  +     + L LR    G   K  DI++    T +  GD+V G I  +     G+ V
Sbjct: 1135 VVDCDVGNNRINLSLR----GGKPKDRDITS---HTDLKRGDVVRGFIKTVTEK--GIFV 1185

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
             +   +   V  ++L +  + +    Y   Q  P++     + V C             H
Sbjct: 1186 YLSRSIQAFVPVSKLTDAYIKEWKKFYRPMQ--PITA----KVVNCA---------DNSH 1230

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + L+++ S              +V+     L+   D+    I +GYVKNVT  G F+ L 
Sbjct: 1231 ILLTMKES--------------EVNGDLHILKGYNDIQVGDIFEGYVKNVTDFGVFVKLG 1276

Query: 1400 RKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
              L+   L   S +S+  VE     F  G  V   +L   P  K++ + LK S
Sbjct: 1277 NTLNVTGLAHKSEVSEAKVEDLHNLFGEGDKVKAIILKTNPTKKQISLGLKAS 1329


>gi|67523381|ref|XP_659751.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|40745035|gb|EAA64191.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|259487526|tpe|CBF86270.1| TPA: rRNA biogenesis protein RRP5, putative (AFU_orthologue;
           AFUA_2G16040) [Aspergillus nidulans FGSC A4]
          Length = 1780

 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 202/857 (23%), Positives = 367/857 (42%), Gaps = 91/857 (10%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
           DD P FPRGGG  LT  ER +IH  A  D  FE       K   KK  K E +A E   D
Sbjct: 53  DDEPSFPRGGGSVLTPLERKQIHIKATKDVLFE------QKSGTKKPSKDEDEAFEDDTD 106

Query: 107 LGSLFGDGIS---------GKLPRYANK------------ITLKNISAGMKLWGVVAEVN 145
           +     D  +         GK  + A +            ++ K +  G  + G V+ +N
Sbjct: 107 MEDADEDASTPAKKSQKRKGKGKKDAKQDKREKKGVRIEGLSFKRLVPGALILGQVSSIN 166

Query: 146 EKDLVICLPGGLRGLARAADALDPILDNEIE---------ANEDNLLPTIFHVGQLVSCI 196
             ++ I LP  L G      ++   L+++IE           E+  L   F++GQ +   
Sbjct: 167 AHNIGISLPNNLTGYVPLT-SVSKTLESKIEKMLEEDEDSDEEEFDLHDYFYLGQYLRTY 225

Query: 197 VLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG 253
           V+ + +   D     K++I LS+       GL    +     + A V S+EDHG ++  G
Sbjct: 226 VVSVGNKSADASSKSKKRIELSIDPRSANTGLQKTDLVVNAAVQASVVSVEDHGLVMDLG 285

Query: 254 LP--SFTGFL------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
           +      GF+      PR + +      +K G +   +V   +    V+ LS++  +   
Sbjct: 286 IEGTDVRGFMSSKEIDPRTDYST-----IKEGSVFLCMVTGQNANGNVIKLSANLQSSGS 340

Query: 306 CVTKDLKGI--SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
                   +  +I+  VPG+     +  +   G++   +     TVD+ H       T+ 
Sbjct: 341 IKKSHFLSVAPTINSFVPGVAAEILLTDVSSTGMIGKIMGMLDTTVDLVHSGGATGKTDL 400

Query: 364 KNDYNQHKKVNARILFVDPTSRA--VGLTL----NPYLLHNRAPPSH---VKVGDIYDQS 414
              Y+   K+  RI    P S    +G ++      +      P S      +  +  ++
Sbjct: 401 TKKYHNGAKIKGRISCTFPGSEPYKIGFSMLDHVQKFSAEGHGPNSSDDAPAISAVIPEA 460

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFR 471
            +V VD GLG+ + I ST      +V +S +A+ +V  +      +K G+    R++G+ 
Sbjct: 461 TIVNVDPGLGVYVKIGST--KHMGFVHVSRLADGQVETISSDHGPFKVGTTHEARVVGYS 518

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVK---GKVIAVDS--FGAIVQFPGGVKALC 526
            ++ L +   +            DV  G VVK    KV+  +S   G IV    G+    
Sbjct: 519 AIDNLYSLSFERKVINQPFLRLEDVTLGAVVKVTITKVLVGESGVTGLIVSLTDGITGFI 578

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 584
           P  H ++  +  P KKF+ G  +  RVL V  + + + +T KK+L+ ++ A+   Y +  
Sbjct: 579 PSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKDYRDIL 638

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
               + G I  I  +G  V+FY  V+G+   SE+      +PS  + +GQVV    ++  
Sbjct: 639 PGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVD 698

Query: 645 PASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
            +  ++++S     ++  +  +    ++ G  V+G V   + + V++ +   G     + 
Sbjct: 699 ASQGKLSVSCRDQSLLADSYRTAFKTIQPGQSVTGTVFEKSDDYVLLRLEDLGGLVARLG 758

Query: 701 TEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSD 755
              +AD      +   S I+ G + ++L+VLD   ++ L+  + + SL  + ++  +PS 
Sbjct: 759 VGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRASLKKATKEGNMPST 818

Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS--KAVDGQRADLSKTYYVGQSVR 813
              +   + V G++ NI  TG FV+FLG L G  PR    + D  +++  K  +  Q V 
Sbjct: 819 FEDLREGAEVTGFIRNITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEFGKANF--QVVS 876

Query: 814 SNILDVNSETGRITLSL 830
           + +  ++++  R  LS+
Sbjct: 877 ATVHSLDTDFRRFILSM 893



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 203/926 (21%), Positives = 405/926 (43%), Gaps = 149/926 (16%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV-- 687
            + VG   + R++         +LSF  K   V     ++L  +  G V  VT   V+V  
Sbjct: 504  FKVGTTHEARVVGYSAIDNLYSLSFERK---VINQPFLRLEDVTLGAVVKVTITKVLVGE 560

Query: 688  -------YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
                     +  G + G IP+ H AD        K   + G     ++L ++ E   + L
Sbjct: 561  SGVTGLIVSLTDGIT-GFIPSVHFADTRLQFPEKK--FREGLSITARVLSVNLEKREVRL 617

Query: 740  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            + K SL+N+   +  D   I P +   G + NI+  G  V+F G + G+   S+  +   
Sbjct: 618  TLKKSLLNTEAAVWKDYRDILPGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYI 677

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 859
             D S+ + +GQ V  + L+V++  G++++S +       D S + + +            
Sbjct: 678  KDPSQHFKLGQVVNVHALNVDASQGKLSVSCR-------DQSLLADSYR----------- 719

Query: 860  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-GATVESGS 918
                +  K ++    G  + G V E +D  V++  E+   +   +   Q+A G+  +  S
Sbjct: 720  ----TAFKTIQP---GQSVTGTVFEKSDDYVLLRLEDLGGLVARLGVGQVADGSASKRSS 772

Query: 919  VI----------QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
             +          +  +LDV +A RL+ ++ +           S ++A K+       +DL
Sbjct: 773  TLSKIRVGQKLNELVVLDVHRAHRLIHVTNRA----------SLKKATKEGNMPSTFEDL 822

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA-----SVSDYNTQKFPQKQFLNGQSVIA 1023
                 V   +  +    L +        IG          D N  +F +  F   Q V A
Sbjct: 823  REGAEVTGFIRNITPTGLFVQF--LGGLIGLVPRRLVGSEDSNKSEFGKANF---QVVSA 877

Query: 1024 TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD--------------------- 1062
            TV +L +     R +L +     T     K + KKS+ +                     
Sbjct: 878  TVHSLDTDFR--RFILSMDPAEATHAGPKKESTKKSAKETAAAGDESLANPVDETLKAKS 935

Query: 1063 ---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTV 1117
               VG +++ +I  +K  ++ +K      GRI ++EV D   ++ +      +F+ GQ +
Sbjct: 936  DITVGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFDSWEDISDKKQPLKHFRPGQVI 995

Query: 1118 TARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1168
            TA+++   +              K  ++ELS+KP  +  ++  + L  ++  V  G    
Sbjct: 996  TAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVK-ADNATPLTIDQ--VQAGSSSF 1052

Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
            G+V  V N++  +++S +++ +L  +D++ + S L + ++++ IG A+   V  ++ EK 
Sbjct: 1053 GFVNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIEKQYPIGCALKFRVTGVDAEKG 1112

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGR 1288
             + L  R       +++  ++ D++      G ++  R++++      +++Q+   L G 
Sbjct: 1113 HIDLSAR-------ERSESLTFDDLSV----GMVLPTRVTRVTDK--QVIMQLNNTLVGA 1159

Query: 1289 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348
            V       I ++D  S     + DP   Y + + V+  ++ + +  R    + LSLR S 
Sbjct: 1160 VDL-----INMADDFS-----KADP-HAYHKNEVVRSCIIGVDKANR---KIHLSLRPS- 1204

Query: 1349 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1408
                      LS+ +      +  +E +  N I++G+V+ V+  G F+ +   + A + +
Sbjct: 1205 --------KVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIVAFIRI 1256

Query: 1409 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1468
            S+LSD Y++  +  F +G+LV GRV  V+P +K+++++LK S    + ++ I  L +L  
Sbjct: 1257 SDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPI-TLYDLKP 1315

Query: 1469 GDIVIGQIKRVESYGLFITIENTNLV 1494
            G IV G++++VE +G FI I+ ++ V
Sbjct: 1316 GQIVTGKVRKVEQFGAFIVIDGSSNV 1341



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 179/403 (44%), Gaps = 49/403 (12%)

Query: 187  FHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQEG 233
            F  GQ+++  VL L D +           GK  ++ LS++   +       L+++ VQ G
Sbjct: 989  FRPGQVITAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVKADNATPLTIDQVQAG 1048

Query: 234  MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRSI 287
                 +V ++ +  + +    P+  G L   + +++  +  D++     G  L+  V  +
Sbjct: 1049 SSSFGFVNNVSNDFFWVSLS-PNVRGRLRFIDASDDISLLADIEKQYPIGCALKFRVTGV 1107

Query: 288  DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
            D  +  + LS+   + S         ++ D L  GM++ TRV  + +  V++       G
Sbjct: 1108 DAEKGHIDLSARERSES---------LTFDDLSVGMVLPTRVTRVTDKQVIMQLNNTLVG 1158

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP----- 402
             VD+ ++ + F   +  + Y++++ V + I+ VD  +R + L+L P  + + + P     
Sbjct: 1159 AVDLINMADDFSKAD-PHAYHKNEVVRSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPE 1217

Query: 403  ----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
                  VKV DI  +  V +V  G GL + +    V   A++ ISD+++  +++ +  ++
Sbjct: 1218 ITSMEQVKVNDII-RGFVRQVSDG-GLFVTVGHNIV---AFIRISDLSDSYLKEWKDSFQ 1272

Query: 459  EGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
             G  V+ R+             LK S  +       T  D+KPG +V GKV  V+ FGA 
Sbjct: 1273 VGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAF 1332

Query: 516  VQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            +   G   V  LC    M++  +      ++ G  +  +VL V
Sbjct: 1333 IVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKV 1375



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 172/408 (42%), Gaps = 41/408 (10%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDN 181
            A  +T+  + AG   +G V  V+     + L   +RG  R  DA D I L  +IE     
Sbjct: 1037 ATPLTIDQVQAGSSSFGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIEKQ--- 1093

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
                 + +G  +   V  +D +K  I      LS R     + L+ + +  GMVL   V 
Sbjct: 1094 -----YPIGCALKFRVTGVDAEKGHID-----LSARER--SESLTFDDLSVGMVLPTRVT 1141

Query: 242  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS----IDRTRKVVYLS 297
             + D   I+     +  G +   N+A++             VVRS    +D+  + ++LS
Sbjct: 1142 RVTDKQVIMQLN-NTLVGAVDLINMADDFSKADPHAYHKNEVVRSCIIGVDKANRKIHLS 1200

Query: 298  SDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
              P  V  S    +D +  S++ +    ++   V+ + + G+ ++        + I  L 
Sbjct: 1201 LRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIVAFIRISDLS 1260

Query: 356  NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD--- 412
            +++    WK+ +   + V  R+  VDP ++ + ++L   +L     PS+     +YD   
Sbjct: 1261 DSY-LKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLD----PSYKAPITLYDLKP 1315

Query: 413  ----QSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRI 467
                  KV +V++    ++   S+ VS   + T ++D   E+ R L   Y+EG  V+ ++
Sbjct: 1316 GQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTL---YEEGDAVKAKV 1372

Query: 468  LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
            L     +G  +  LKAS F       S         G  +++DSFG +
Sbjct: 1373 LKVDRDQGKISFGLKASYFNDDAEDESSGNEDSDSDG--VSLDSFGGV 1418



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 35/242 (14%)

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVT------GYVYKVDNEWALLTISRHLKAQL 1191
            LS++PS +    + S L  ++ +++  ++V       G+V +V +    +T+  ++ A  
Sbjct: 1199 LSLRPSKV----LSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIVA-- 1252

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
            FI  S    S L+E++  F +G+ V G V  ++ E K L++ L+       D  +D S  
Sbjct: 1253 FIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLK-------DSVLDPSYK 1305

Query: 1252 NMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
               T   +  G IV G++ K+      +V+    ++ G  H TE+ +  V          
Sbjct: 1306 APITLYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVE--------- 1356

Query: 1310 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1369
              D  + Y+EG  VK KVL++ R       +   L++S     + + S  + D D+ G  
Sbjct: 1357 --DARTLYEEGDAVKAKVLKVDRD---QGKISFGLKASYFNDDAEDESSGNEDSDSDGVS 1411

Query: 1370 LE 1371
            L+
Sbjct: 1412 LD 1413



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 101/500 (20%), Positives = 191/500 (38%), Gaps = 75/500 (15%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIV----KPGKKFKVGAE 548
            SD+  G V+K K+ +V      V+    V+    +  +   +E +    +P K F+ G  
Sbjct: 935  SDITVGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFDSWEDISDKKQPLKHFRPGQV 994

Query: 549  LVFRVLGVKSKR----ITVTH------------KKTLVKSKLAILSSYAEATDRLITHGW 592
            +  +VLG+   R    + ++H            K   VK+  A   +  +      + G+
Sbjct: 995  ITAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVKADNATPLTIDQVQAGSSSFGF 1054

Query: 593  ITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            +  +     +V     V+G         ++ L    E    Y +G  +K R+        
Sbjct: 1055 VNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIE--KQYPIGCALKFRVTGVDAEKG 1112

Query: 649  RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             I+LS   +   ++ DDL  +G ++   V  VT   V++ +       G +   ++AD  
Sbjct: 1113 HIDLSARERSESLTFDDL-SVGMVLPTRVTRVTDKQVIMQL--NNTLVGAVDLINMADDF 1169

Query: 709  E----HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ---QLPSDAS--HI 759
                 HA     V++       ++ +D  +  + LS + S + S+    Q P   S   +
Sbjct: 1170 SKADPHAYHKNEVVRSC-----IIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQV 1224

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
              N ++ G+V  + + G FV     +  F   S   D    +   ++ VGQ V+  +  V
Sbjct: 1225 KVNDIIRGFVRQVSDGGLFVTVGHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLV 1284

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
            + E  ++ +SLK S     D S+     L + K                      G ++ 
Sbjct: 1285 DPENKKLQMSLKDSVL---DPSYKAPITLYDLKP---------------------GQIVT 1320

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAER 932
            GKV +   FG  +  +  S+V G     ++A   VE        G  ++A +L V + + 
Sbjct: 1321 GKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKVDRDQG 1380

Query: 933  LVDLSLKTVFIDRFREANSN 952
             +   LK  + +   E  S+
Sbjct: 1381 KISFGLKASYFNDDAEDESS 1400



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 109/248 (43%), Gaps = 23/248 (9%)

Query: 1068 QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            +A I  + P L + +K G   H G +H++ + D +   + +    FK+G T  AR++  S
Sbjct: 459  EATIVNVDPGLGVYVKIGSTKHMGFVHVSRLADGQVETISSDHGPFKVGTTHEARVVGYS 518

Query: 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV---DNEWALLT 1182
               +     L+ LS +  ++      ++      DV++G  V   + KV   ++    L 
Sbjct: 519  AIDN-----LYSLSFERKVI------NQPFLRLEDVTLGAVVKVTITKVLVGESGVTGLI 567

Query: 1183 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1242
            +S       FI    +  + LQ  +++F  G ++T  VLS+N EK+ +RL L+     + 
Sbjct: 568  VSLTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKK---SLL 624

Query: 1243 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1302
            +    +  D     I  G    G I  IL    G VVQ   ++ G +  +E+    + DP
Sbjct: 625  NTEAAVWKDYRD--ILPGAQSPGTIINILP--NGAVVQFYGNVRGWLSVSEMSEAYIKDP 680

Query: 1303 LSGYDEGQ 1310
               +  GQ
Sbjct: 681  SQHFKLGQ 688


>gi|302308948|ref|NP_986113.2| AFR566Cp [Ashbya gossypii ATCC 10895]
 gi|299790870|gb|AAS53937.2| AFR566Cp [Ashbya gossypii ATCC 10895]
          Length = 1715

 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 284/1270 (22%), Positives = 528/1270 (41%), Gaps = 177/1270 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
            FPRGG  +LT  E  ++  E   D  F           +   K  E +  +      +  
Sbjct: 39   FPRGGASALTPLELKQVANEAASDVLF----------GRDDGKPAEERPRKKKKTSKASK 88

Query: 112  GDGISGKLPR--YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP 169
             D ++GK  R      ++ K +++G  L G +  VN  DL I L  GLRG     +   P
Sbjct: 89   EDAVAGKEDRTDIVEHLSFKGLTSGTVLLGQLCGVNRTDLCIALTDGLRGYVPLTNISAP 148

Query: 170  I------LDNEIEA--------------------NEDNLLPTIFHVGQLVSCIVLQ---L 200
                   LD  +++                     E   L   F +GQ + C+V++   L
Sbjct: 149  FTSLLEQLDQSMDSGSEDEDDDSDDEQRDKPHTITELPELSKYFTLGQWLRCVVVKNSAL 208

Query: 201  DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
            D  KK+    +I LS+  S +      E + +   +   VKSIEDHG +L  G+   TGF
Sbjct: 209  DSQKKK--NSRIELSIEPSKV-NLFETEDLAKHTTVQCAVKSIEDHGALLDLGVQDVTGF 265

Query: 261  LPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDL 318
            +   +L++    DV PG + L  + +  DRT  V +  ++    VS+         S+D 
Sbjct: 266  ISNKDLSKMG--DVMPGSVFLANITKRGDRTATVNFEFTAKNSKVSQIS-------SVDA 316

Query: 319  LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN---TFPTTNWKNDYNQHKKVNA 375
            ++PG  +    + I  +G++        G +D F  ++    F  T+ K+ Y     +  
Sbjct: 317  VIPGHTIDFLCEKITNHGIIGKAF----GVLDGFLSESQARVFSVTDMKHKYAIGSNIKV 372

Query: 376  RILFVDPTSRAVG----------LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
            RI+    T +             L+L   LL   A  +   VG ++D  K++  D     
Sbjct: 373  RIIATLRTKQGNKVILVSALPHILSLERNLLETEAMHA-FPVGYVFDNCKLLGRD----- 426

Query: 426  LLDIPSTPVSTPAYVTISD--VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
                     S   YV++SD  + +  + K      +   V+ R+ G+  ++G        
Sbjct: 427  ---------SQYLYVSLSDERIGQIHISKAGDAITQ-EAVKARVTGYNTVDGYYQLTSDP 476

Query: 484  SAFEGLVFTHSDVKPGMVVKG-KVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                      +D+  G ++ G ++ AV   G  +  F G  KA     H+S+  +V P +
Sbjct: 477  KLLAKPYLRSADIPVGTILSGCEITAVSGNGIELSLFDGQFKAFVAPLHISDIRLVYPER 536

Query: 542  KFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAE----ATDRLITHGWI 593
            KFK+G+++  RVL V +K R+ VT KK+LV    S + ++S + +    A +   T   +
Sbjct: 537  KFKIGSKVKGRVLHVDNKGRVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEEDGKTLATV 596

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
               +  GC V F   ++ F P  E+             +GQ V  +++  +    ++ ++
Sbjct: 597  ESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRAQDHLRLGQTVVVKVLEHVAKQSKVIVT 656

Query: 654  FMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD- 706
              +  +  SE     +  LV G  +VDV     T ++VVV +   G  +G I   HL+D 
Sbjct: 657  RKVS-SEDSEKQKAAINDLVVGRSIVDVTVVEKTKDSVVVELNDVGL-RGVIYVGHLSDS 714

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LP---SDASHI 759
             LE    +   ++ G    Q +V+D +    +  +S K SLI  A +  LP    D    
Sbjct: 715  KLEQNRALLKKLRIGSSL-QGVVMDKDVKTRVFNMSCKKSLIKDASKDILPLTFVDIKDK 773

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
             PN+ +HGYV +I + G FV F G+  G    S A + +  D+ K +Y+ QSV   +L  
Sbjct: 774  DPNTPMHGYVKSISDRGIFVAFTGKFVGLVLPSYATESRDVDIFKKFYINQSVTVYLLRT 833

Query: 820  NSETGR--ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            + E  R  +T+S  Q+     D++           +A +       + +K +  + +G+V
Sbjct: 834  DEENERFLLTMSPPQTSNKKEDSN---------HDVAAVNPVD---ASVKIISQYSVGTV 881

Query: 878  IEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAILDV 927
             + +V   +     VV++   H         D +  I + +   A  +SG VI   ++  
Sbjct: 882  TKARVKSVKKTQLNVVLADNLHGRVDASEIYDTFEEIENPKEPLAKFKSGDVIDVKVIGF 941

Query: 928  --AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENY 985
              +K  + + +S +T  ++   E ++ + A K           G +Q +     +   + 
Sbjct: 942  HDSKTHKFLPISHRT-GVNTVLELSAKKSALK-----------GAYQPIE-FSGMKNGDE 988

Query: 986  LVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045
            L+  +  +     + ++S     K P  +  +  SV    +   S      L + +K + 
Sbjct: 989  LIGFVNNFAKGFIWLTLSPALKAKIPDFELSDDGSVFTGNLD-ESFPLGCALKVKVKELD 1047

Query: 1046 ETETSSSKRAKKKSSYDVGSL-----VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
                  S  A+K +  D+  +     + A I ++    L L  G    G   +T+  ++ 
Sbjct: 1048 PAHKIVSVSARKHAITDIKDIKVADKLPARIVKVADSYLLLDLGNRLTGVAFVTDALNEF 1107

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            S  + +++ + KIG  + A ++      D++   +  LS++    T      + +    D
Sbjct: 1108 SLSLRSVYED-KIGSMILASVVG----VDVENKKI-NLSLRTEDAT-----DRYILSHKD 1156

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +  G  V G++  V ++   + +SR L+A  F+  S    + ++E+++ +   + +TG V
Sbjct: 1157 LKQGDVVRGFIKSVTDKGIFVYLSRTLQA--FVPVSKLTDAYIKEWKKFYKTMQPITGKV 1214

Query: 1221 LSINKEKKLL 1230
            ++   + ++L
Sbjct: 1215 VNCESDSRIL 1224



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 205/898 (22%), Positives = 375/898 (41%), Gaps = 165/898 (18%)

Query: 654  FMMKPTRVSEDDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HL 708
             + KP   S D  + +G+++SG  +  V+ N + + +   G  K  +   H++D    + 
Sbjct: 478  LLAKPYLRSAD--IPVGTILSGCEITAVSGNGIELSLF-DGQFKAFVAPLHISDIRLVYP 534

Query: 709  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ---LPSDASHIHPNSVV 765
            E    + S +K      ++L +DN+   + ++ K SL+++      L SD   I   +  
Sbjct: 535  ERKFKIGSKVK-----GRVLHVDNKG-RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEE 588

Query: 766  HGYVCNIIET----GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDV 819
             G     +E+    GC V FLG L  F P  +  +   QRA       +GQ+V   +L+ 
Sbjct: 589  DGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRA--QDHLRLGQTVVVKVLEH 646

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVI 878
             ++  ++ ++ K    SS D+         ++K A              +   ++G S++
Sbjct: 647  VAKQSKVIVTRK---VSSEDSE--------KQKAA--------------INDLVVGRSIV 681

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 928
            +  V E     VVV   +   + G I    L+ + +E           GS +Q  ++D  
Sbjct: 682  DVTVVEKTKDSVVVELNDVG-LRGVIYVGHLSDSKLEQNRALLKKLRIGSSLQGVVMDKD 740

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKE 983
               R+ ++S K   I   ++A+ +         ++   +  +H  V +I +         
Sbjct: 741  VKTRVFNMSCKKSLI---KDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTG 797

Query: 984  NYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 1043
             ++ L LP Y       +    +   F  K+F   QSV  TV  L +     R LL    
Sbjct: 798  KFVGLVLPSY-------ATESRDVDIF--KKFYINQSV--TVYLLRTDEENERFLL---T 843

Query: 1044 ISETETSSSKR---------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
            +S  +TS+ K                 K  S Y VG++ +A +  +K  +L +      H
Sbjct: 844  MSPPQTSNKKEDSNHDVAAVNPVDASVKIISQYSVGTVTKARVKSVKKTQLNVVLADNLH 903

Query: 1089 GRIHITEVNDDKSNVVENL---FSNFKIGQTVTARII----AKSNK--PDMKKS---FLW 1136
            GR+  +E+ D    + EN     + FK G  +  ++I    +K++K  P   ++    + 
Sbjct: 904  GRVDASEIYDTFEEI-ENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRTGVNTVL 962

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
            ELS K S L     G+    E   +  G  + G+V      +  LT+S  LKA++   + 
Sbjct: 963  ELSAKKSALK----GAYQPIEFSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPDFEL 1018

Query: 1197 AYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            + + S         F +G A+   V  ++   K++ +  R           DI +     
Sbjct: 1019 SDDGSVFTGNLDESFPLGCALKVKVKELDPAHKIVSVSARKHA------ITDIKD----- 1067

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
             I   D +  RI K+      L++ +G  L G V F       V+D L   +E      S
Sbjct: 1068 -IKVADKLPARIVKVADSY--LLLDLGNRLTG-VAF-------VTDAL---NEFSLSLRS 1113

Query: 1316 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1373
             Y++  G  +   V+ +    +    + LSLR+                 D   +++   
Sbjct: 1114 VYEDKIGSMILASVVGVDVENK---KINLSLRTE----------------DATDRYILSH 1154

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
            +DL    +V+G++K+VT KG F+ LSR L A V +S L+D Y++  +K +   + + G+V
Sbjct: 1155 KDLKQGDVVRGFIKSVTDKGIFVYLSRTLQAFVPVSKLTDAYIKEWKKFYKTMQPITGKV 1214

Query: 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            ++ E  S R+ +T+K S+        + + ++L  GDI  G +K V  +G+F+ + NT
Sbjct: 1215 VNCESDS-RILLTMKESEV-NGELKILKSYADLKSGDIFDGSVKNVTDFGVFVKLHNT 1270


>gi|326481772|gb|EGE05782.1| rRNA biogenesis protein RRP5 [Trichophyton equinum CBS 127.97]
          Length = 1738

 Score =  167 bits (422), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 212/837 (25%), Positives = 348/837 (41%), Gaps = 116/837 (13%)

Query: 3   ASSRKSQKKSSKDGPKFNKAS---------------KNQFKNSKKQINDAVEAQDLALPP 47
           +SS   +KK+  D  + N AS               K   K SKK  +   +A  +++  
Sbjct: 14  SSSSAPKKKAKVDAEELNGASKLKKKSKEPKEQKEQKEAVKASKKDTSTVSKAAPISMLR 73

Query: 48  DDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE-------------------AVE--RG 84
           D+  P FPRGG + LT  ER +I   A  D  FE                   A E  + 
Sbjct: 74  DEQ-PAFPRGGNNVLTPLERKQIQIQATKDVLFEQKGKNGAEFANSDDEGSLGAAEDKKD 132

Query: 85  LHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEV 144
              K+KK+K KT +                 + K       +T K ++ G ++ G V+ +
Sbjct: 133 AGTKSKKRKAKTSKTKEAPA-----------AAKQGVKVESLTYKRLAVGSRILGQVSSI 181

Query: 145 NEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------------------LPTI 186
              D+ + LP  L G     +A+   L  ++EA   +                   L   
Sbjct: 182 GLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEDDDDDDDDDDDLELKNY 240

Query: 187 FHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
             VGQ +   V      +DDKK   K+ I LS+       GL+   +     + A V S+
Sbjct: 241 VKVGQYLRAAVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVISV 300

Query: 244 EDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 298
           EDHG ++  GL      GF+    L   +GID   VK G +   +V   + +  V+ LS+
Sbjct: 301 EDHGLVMDLGLEENEAKGFISSRELP--AGIDISTVKEGSVFLCIVTGQNASGTVIKLSA 358

Query: 299 DPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
           D  + +            +I+  +PG      +  +   G++   +      VD+ H   
Sbjct: 359 DLSSAASVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGA 418

Query: 357 TFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLHNRAPPSHVKVGD----- 409
           +    +    Y+   K+  R++   P+S  V  G ++   +L      + V  GD     
Sbjct: 419 SDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGGDDDLPL 478

Query: 410 ---IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCV 463
              I  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS  
Sbjct: 479 ISDIIPEVKVTYVDTSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSMEGPYKVGSTH 536

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQF 518
             RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV  
Sbjct: 537 EGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSL 596

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
              +  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S  A 
Sbjct: 597 TDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAP 656

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
              Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV
Sbjct: 657 WKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVV 716

Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIA 691
               ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ +  
Sbjct: 717 NVHALTVDAENERLVVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVFEKSSDDLLIKLQD 775

Query: 692 KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-----LDNESSNLLLSAK 742
            G     + + H++D      T   + I+ G + D LLV        +S   LLS K
Sbjct: 776 SGLI-ARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKFAPYKEDSDRFLLSLK 831



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 212/928 (22%), Positives = 395/928 (42%), Gaps = 144/928 (15%)

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMM-------KPTRV----SEDDLVKLGSLVSG 675
            ++ YH G  +K R++++ P+S  + L F +        PT       +DDL  +  ++  
Sbjct: 426  TTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGGDDDLPLISDIIPE 485

Query: 676  VVDVVTPNAVVVYV-IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 733
            V       ++ +YV +     +G +    LAD  ++  + M+   K G   +  ++  + 
Sbjct: 486  VKVTYVDTSLGLYVQLGSTKHQGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRIIGFSA 545

Query: 734  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE-----TGCFVRFLGRLTGF 788
              NL L +    I   +Q       +   SVV G +  ++       G  V     ++G 
Sbjct: 546  MDNLFLVSLEPKI--IEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGL 603

Query: 789  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
             P     D +     K +  G  V   IL V+ +  ++ L+LK+S  +S  A +      
Sbjct: 604  VPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPW------ 657

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 908
                              K  E    GS   G + +  + G +V F  +  V GF+   +
Sbjct: 658  ------------------KDYESISAGSRSPGTLIKIQNNGAIVQF--YGAVKGFLPVSE 697

Query: 909  LAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
            ++ A ++        G V+    L V A+ ERLV +S K           S   A  +  
Sbjct: 698  MSEAYIKDPSQHFTVGQVVNVHALTVDAENERLV-VSCKD---------PSTVTADYQSA 747

Query: 961  KREASKDLGVHQTV-----NAIVEIVKENYLVLSLPEYNHSIGYAS--VSDYNTQKFPQK 1013
              +    L V  TV     + ++  ++++ L+  L   + S G ++   S +N  +  QK
Sbjct: 748  FEKVHPGLVVSGTVFEKSSDDLLIKLQDSGLIARLTSNHISDGSSAKRTSTFNRIRVGQK 807

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDV--------- 1063
              ++G  V       P    + R LL LK +S+  E S S  A +K +  V         
Sbjct: 808  --MDGLLVHKFA---PYKEDSDRFLLSLKPVSKPKEQSDSNPASEKKAPAVVLNNPIDEE 862

Query: 1064 ---------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFK 1112
                     G + +A+IT +K  +L +       GRI I+E+ D   ++ +      +F 
Sbjct: 863  LKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKSFH 922

Query: 1113 IGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
                +  R++   +  + K         K  ++ELS K S L  SE    L  E+  + +
Sbjct: 923  SKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLHLEQ--LKV 979

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A+   V+ I
Sbjct: 980  GDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVIGI 1039

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            + EK  L L  R    G S KT+ +++      + +G I+ GR++KI      ++VQI  
Sbjct: 1040 DAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR--QVLVQIND 1088

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
            ++ G +   ++ +          D  + +P + + + + ++  V+++    +    +  S
Sbjct: 1089 NVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK---KISFS 1134

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
            +R S           LS+ +      +  I++L    IV+G+++ V + G F+ L   + 
Sbjct: 1135 VRPS---------KVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVFVTLGHDVT 1185

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
            A + +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S      +     L
Sbjct: 1186 AYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLDPNYKPPF-TL 1244

Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIENT 1491
              L VG IV G++++VE YG FI I+ +
Sbjct: 1245 KELKVGQIVTGKVRKVEEYGAFIAIDGS 1272



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 214/939 (22%), Positives = 380/939 (40%), Gaps = 173/939 (18%)

Query: 610  QGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L        SSM   Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 507  QGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 563

Query: 667  VKL-----GSLVSGVVD--VVTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 717
             +L     GS+V G ++  ++ P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 564  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHP---EKK 620

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 621  FREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 680

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 681  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 740

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F   EK+                     G V+ G V E +   +++  ++
Sbjct: 741  TAD---YQSAF---EKVHP-------------------GLVVSGTVFEKSSDDLLIKLQD 775

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD-------------LSLKTVFI 943
               +    ++H   G++ +  S      +       LV              LSLK V  
Sbjct: 776  SGLIARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKFAPYKEDSDRFLLSLKPVSK 835

Query: 944  DRFREANSNRQAQKK----------KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE- 992
             +  +++SN  ++KK            + +A +D+ V +   A +  VK+  L + L + 
Sbjct: 836  PK-EQSDSNPASEKKAPAVVLNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADN 894

Query: 993  ----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE 1048
                 + S  + S  D   +K P K F +   +   V+ +  +     L +         
Sbjct: 895  VQGRIDISEIFDSWEDIKDRKRPLKSFHSKDILPVRVLGIHDARNHKFLPI--------- 945

Query: 1049 TSSSKRAKKKSSYDVG---SLVQAEITEIKPLEL-RLKFG---IGF-------------- 1087
               S R+ K S Y++    S +QA  +E KPL L +LK G   IGF              
Sbjct: 946  ---SHRSGKVSVYELSTKRSCLQA--SEFKPLHLEQLKVGDRHIGFVNNIAEDCLWLNIS 1000

Query: 1088 ---HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELSIK 1141
                GR+ IT+++DD S +  N+  NF IG  +   +I   A+ N+ D+       +   
Sbjct: 1001 PNVRGRLRITDISDDIS-IRGNIQKNFPIGSALQVAVIGIDAEKNRLDLSA----RIGSS 1055

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
               LTV            D+S G  + G V K+ +   L+ I+ ++   + ++D A + +
Sbjct: 1056 AKTLTV-----------ADLSKGMILVGRVTKITDRQVLVQINDNVVGAISLIDMADDYT 1104

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD-KTVD---ISNDNMQTFI 1257
            ++      FH  +A+   V+ ++   K +   +RP +   S    VD    S DN++   
Sbjct: 1105 KVNPTN--FHKNEALRVCVVDVDIPNKKISFSVRPSKVLSSSLPVVDPEITSIDNLKV-- 1160

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
              G IV G I ++ +   G+ V +G  +   +  ++L +  + +     DE Q D     
Sbjct: 1161 --GQIVRGFIRRVDN--IGVFVTLGHDVTAYIRVSDLSDSFLKE---WKDEFQVD----- 1208

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
               Q V+ ++  + +       ++++L+ S+              +D   K    +++L 
Sbjct: 1209 ---QLVQGRLTVVDKE---NNKIQMTLKKSV--------------LDPNYKPPFTLKELK 1248

Query: 1378 PNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
               IV G V+ V   G FI +  S  L      S +++  VE   + +    +V  +VL 
Sbjct: 1249 VGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLK 1308

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVI 1473
            V+    ++ + LK S  R   + E + N S+   G I++
Sbjct: 1309 VDLEKGQIALGLKASYFRDLPEEESDANCSDDEAGGIML 1347



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 156/351 (44%), Gaps = 39/351 (11%)

Query: 208  GKRKIW-LSLRLSLL----YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
            GK  ++ LS + S L    +K L LE ++ G     +V +I +    L+   P+  G L 
Sbjct: 950  GKVSVYELSTKRSCLQASEFKPLHLEQLKVGDRHIGFVNNIAEDCLWLNIS-PNVRGRLR 1008

Query: 263  RNNLAENSGI------DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI 316
              +++++  I      +   G  LQ  V  ID  +  + LS+   + +K +T       +
Sbjct: 1009 ITDISDDISIRGNIQKNFPIGSALQVAVIGIDAEKNRLDLSARIGSSAKTLT-------V 1061

Query: 317  DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
              L  GM++  RV  I +  V++       G + +  + + +   N  N +++++ +   
Sbjct: 1062 ADLSKGMILVGRVTKITDRQVLVQINDNVVGAISLIDMADDYTKVNPTN-FHKNEALRVC 1120

Query: 377  ILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLL 427
            ++ VD  ++ +  ++ P  + + + P          ++KVG I  +  + RVD  +G+ +
Sbjct: 1121 VVDVDIPNKKISFSVRPSKVLSSSLPVVDPEITSIDNLKVGQIV-RGFIRRVD-NIGVFV 1178

Query: 428  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
             +        AY+ +SD+++  +++ + +++    V+ R+             LK S  +
Sbjct: 1179 TLGH---DVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLD 1235

Query: 488  GLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 533
                  FT  ++K G +V GKV  V+ +GA +   G   +  LC    M+E
Sbjct: 1236 PNYKPPFTLKELKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAE 1286


>gi|374109344|gb|AEY98250.1| FAFR566Cp [Ashbya gossypii FDAG1]
          Length = 1715

 Score =  166 bits (420), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 213/851 (25%), Positives = 360/851 (42%), Gaps = 119/851 (13%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG  +LT  E  ++  E   D  F           +   K  E +  +      +  
Sbjct: 39  FPRGGASALTPLELKQVANEAASDVLF----------GRDDGKPAEERPRKKKKTSKASK 88

Query: 112 GDGISGKLPR--YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP 169
            D ++GK  R      ++ K +++G  L G +  VN  DL I L  GLRG     +   P
Sbjct: 89  EDAVAGKEDRTDIVEHLSFKGLTSGTVLLGQLCGVNRTDLCIALTDGLRGYVPLTNISAP 148

Query: 170 I------LDNEIEA--------------------NEDNLLPTIFHVGQLVSCIVLQ---L 200
                  LD  +++                     E   L   F +GQ + C+V++   L
Sbjct: 149 FTSLLEQLDQSMDSGSEDEDEDSDDEQRDKPHTITELPELSKYFTLGQWLRCVVVKNSAL 208

Query: 201 DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
           D  KK+    +I LS+  S +      E + +   +   VKSIEDHG +L  G+   TGF
Sbjct: 209 DSQKKK--NSRIELSIEPSKV-NLFETEDLAKHTTVQCAVKSIEDHGALLDLGVQDVTGF 265

Query: 261 LPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDL 318
           +   +L++    DV PG + L  + +  DRT  V +  ++    VS+         S+D 
Sbjct: 266 ISNKDLSKMG--DVMPGSVFLANITKRGDRTATVNFEFTAKNSKVSQIS-------SVDA 316

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN---TFPTTNWKNDYNQHKKVNA 375
           ++PG  +    + I  +G++        G +D F  ++    F  T+ K+ Y     +  
Sbjct: 317 VIPGHTIDFLCEKITNHGIIGKAF----GVLDGFLSESQARVFSVTDMKHKYAIGSNIKV 372

Query: 376 RILFVDPTSRAVG----------LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
           RI+    T +             L+L   LL   A  +   VG ++D  K++  D     
Sbjct: 373 RIIATLRTKQGNKVILVSALPHILSLERNLLETEAMHA-FPVGYVFDNCKLLGRD----- 426

Query: 426 LLDIPSTPVSTPAYVTISD--VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
                    S   YV++SD  + +  + K      +   V+ R+ G+  ++G        
Sbjct: 427 ---------SQYLYVSLSDERIGQIHISKAGDAITQ-EAVKARVTGYNTVDGYYQLTSDP 476

Query: 484 SAFEGLVFTHSDVKPGMVVKG-KVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                     +D+  G ++ G ++ AV   G  +  F G  KA     H+S+  +V P +
Sbjct: 477 KLLAKPYLRSADIPVGTILSGCEITAVSGNGIELSLFDGQFKAFVAPLHISDIRLVYPER 536

Query: 542 KFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAE----ATDRLITHGWI 593
           KFK+G+++  RVL V +K R+ VT KK+LV    S + ++S + +    A +   T   +
Sbjct: 537 KFKIGSKVKGRVLHVDNKGRVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEEDGKTLATV 596

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
              +  GC V F   ++ F P  E+             +GQ V  +++  +    ++ ++
Sbjct: 597 ESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRAQDHLRLGQTVVVKVLEHVAKQSKVIVT 656

Query: 654 FMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD- 706
             +  +  SE     +  LV G  +VDV     T ++VVV +   G  +G I   HL+D 
Sbjct: 657 RKVS-SEDSEKQKAAINDLVVGRSIVDVTVVEKTKDSVVVELNDVGL-RGVIYVGHLSDS 714

Query: 707 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LP---SDASHI 759
            LE    +   ++ G    Q +V+D +    +  +S K SLI  A +  LP    D    
Sbjct: 715 KLEQNRALLKKLRIGSSL-QGVVMDKDVKTRVFNMSCKKSLIKDASKDILPLTFVDIKDK 773

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            PN+ +HGYV +I + G FV F G+  G    S A + +  D+ K +Y+ QSV   +L  
Sbjct: 774 DPNTPMHGYVKSISDRGIFVAFTGKFVGLVLPSYATESRDVDIFKKFYLNQSVTVYLLRT 833

Query: 820 NSETGRITLSL 830
           + E  R  L++
Sbjct: 834 DEENERFLLTM 844



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 205/898 (22%), Positives = 375/898 (41%), Gaps = 165/898 (18%)

Query: 654  FMMKPTRVSEDDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HL 708
             + KP   S D  + +G+++SG  +  V+ N + + +   G  K  +   H++D    + 
Sbjct: 478  LLAKPYLRSAD--IPVGTILSGCEITAVSGNGIELSLF-DGQFKAFVAPLHISDIRLVYP 534

Query: 709  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ---LPSDASHIHPNSVV 765
            E    + S +K      ++L +DN+   + ++ K SL+++      L SD   I   +  
Sbjct: 535  ERKFKIGSKVK-----GRVLHVDNKG-RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEE 588

Query: 766  HGYVCNIIET----GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDV 819
             G     +E+    GC V FLG L  F P  +  +   QRA       +GQ+V   +L+ 
Sbjct: 589  DGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRA--QDHLRLGQTVVVKVLEH 646

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVI 878
             ++  ++ ++ K    SS D+         ++K A              +   ++G S++
Sbjct: 647  VAKQSKVIVTRK---VSSEDSE--------KQKAA--------------INDLVVGRSIV 681

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 928
            +  V E     VVV   +   + G I    L+ + +E           GS +Q  ++D  
Sbjct: 682  DVTVVEKTKDSVVVELNDVG-LRGVIYVGHLSDSKLEQNRALLKKLRIGSSLQGVVMDKD 740

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKE 983
               R+ ++S K   I   ++A+ +         ++   +  +H  V +I +         
Sbjct: 741  VKTRVFNMSCKKSLI---KDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTG 797

Query: 984  NYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 1043
             ++ L LP Y       +    +   F  K+F   QSV  TV  L +     R LL    
Sbjct: 798  KFVGLVLPSY-------ATESRDVDIF--KKFYLNQSV--TVYLLRTDEENERFLL---T 843

Query: 1044 ISETETSSSKR---------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
            +S  +TS+ K                 K  S Y VG++ +A +  +K  +L +      H
Sbjct: 844  MSPPQTSNKKEDSNHDVAAVNPVDASVKIISQYSVGTITKARVKSVKKTQLNVVLADNLH 903

Query: 1089 GRIHITEVNDDKSNVVENL---FSNFKIGQTVTARII----AKSNK--PDMKKS---FLW 1136
            GR+  +E+ D    + EN     + FK G  +  ++I    +K++K  P   ++    + 
Sbjct: 904  GRVDASEIYDTFEEI-ENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRTGVNTVL 962

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
            ELS K S L     G+    E   +  G  + G+V      +  LT+S  LKA++   + 
Sbjct: 963  ELSAKKSALK----GAYQPIEFSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPDFEL 1018

Query: 1197 AYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            + + S         F +G A+   V  ++   K++ +  R           DI +     
Sbjct: 1019 SDDGSVFTGNLDESFPLGCALKVKVKELDPAHKIVSVSARKHA------ITDIKD----- 1067

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
             I   D +  RI K+      L++ +G  L G V F       V+D L   +E      S
Sbjct: 1068 -IKVADKLPARIVKVADSY--LLLDLGNRLTG-VAF-------VTDAL---NEFSLSLRS 1113

Query: 1316 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1373
             Y++  G  +   V+ +    +    + LSLR+                 D   +++   
Sbjct: 1114 VYEDKIGSMILASVVGVDVENK---KINLSLRTE----------------DATDRYISSH 1154

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
            +DL    +V+G++K+VT KG F+ LSR L A V +S L+D Y++  +K +   + + G+V
Sbjct: 1155 KDLKQGDVVRGFIKSVTDKGIFVYLSRTLQAFVPVSKLTDAYIKEWKKFYKTMQPITGKV 1214

Query: 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            ++ E  S R+ +T+K S+        + + ++L  GDI  G +K V  +G+F+ + NT
Sbjct: 1215 VNCESDS-RILLTMKESEV-NGELKILKSYADLKSGDIFDGSVKNVTDFGVFVKLHNT 1270


>gi|50294291|ref|XP_449557.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528871|emb|CAG62533.1| unnamed protein product [Candida glabrata]
          Length = 1706

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 192/770 (24%), Positives = 342/770 (44%), Gaps = 94/770 (12%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL----------- 171
           +   N+  G  L G +  + + DL I    GL G   L   ++ L  +L           
Sbjct: 103 LNFNNVKEGTILLGQIDSITKNDLRITFTDGLSGFVDLTHISEQLTSLLEDIDEDMDSDS 162

Query: 172 ---DNEIEANEDNL----LPTI---FHVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLS 219
              D E E+++D      LP +   F VGQ + C V +    K +  K+K  I L++  S
Sbjct: 163 KEDDAEYESSDDESEQKSLPNLRHYFKVGQWLRCAVTKNTALKPKNAKQKKRIELTIEPS 222

Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-L 278
           ++     +E + +  ++   V+SIEDHG  L  G+PS TGF+ + +       ++KPG +
Sbjct: 223 VV-NNFDVEDINKNTIIQCSVESIEDHGATLDLGVPSLTGFIAKKDCTNFD--ELKPGSV 279

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
            +  + +  DR+   + +S D  +V K     +   SID ++PG +V    + I ++G++
Sbjct: 280 FISCITKKTDRS---IVVSQDF-SVKKNKMTSIS--SIDSVLPGQVVDLLCEEITDSGIV 333

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL---FVDPTSRAVGLTLNPYL 395
                  +  +   HLQ TF   + K+ ++    +  RIL         R + L+  P++
Sbjct: 334 GKVFGSISAFIGKPHLQ-TFSEEDIKHKFSLGSNIPCRILASVINKSGDRVLILSTLPHV 392

Query: 396 LHNRAPPSHVK------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD----- 444
           +        ++      +G I D+S V   D              S+  Y+ ISD     
Sbjct: 393 ISLNNTLGSIESLEAFPIGFIIDESVVKGRD--------------SSYLYLAISDKFIGR 438

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           V +  + ++ K+ K    ++ R++G+   + +          +       D+  G V   
Sbjct: 439 VHQSNLGEIIKQDK----LKSRVIGYDVADCIFELTTDPEKLKLKYIRSKDIPVGEVFNN 494

Query: 505 -KVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RI 561
            +++   S G  ++  GG   A  P  H+S+  ++ P +KFK+ ++   R+L V +   I
Sbjct: 495 CEILKASSSGVELKLLGGQFTAFVPPLHISDIRLIYPERKFKIASKTKCRILNVDNHGHI 554

Query: 562 TVTHKKTLVKSK---LAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
             T KK+LV  +     ++ S+  A         T G +     HGC + F+ GV GF P
Sbjct: 555 IATMKKSLVNDEELEKPVIESFETAKSIKNKNEKTVGTVQSFNGHGCVIMFFGGVTGFLP 614

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLG 670
           +SE+             +GQ V+ +++      RRI ++  +      +     + +K+G
Sbjct: 615 KSEVSEVFVKRAEDHLRLGQTVQVKVLEVDEERRRIIVTCKVSNEEAQQQKSIIESLKIG 674

Query: 671 -SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLL 728
            S++  VV   T ++V+V +   G  +G I   H++D  +E        I+ G +   L 
Sbjct: 675 QSIIETVVVEKTKDSVIVEIPDVGI-RGVIYVGHISDERIEQCRAEIKKIRIGSKLTGL- 732

Query: 729 VLDNESSNLL--LSAKYSLINSAQ--QLPSDASHI---HPNSVVHGYVCNIIETGCFVRF 781
           V+D +S   +  LS K SL+  AQ  +LP+  + I        +HGYV +I  TG FV F
Sbjct: 733 VIDKDSRTQIFNLSLKKSLMKDAQNKRLPTTFAEITKFKKTDPLHGYVKSISSTGVFVAF 792

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G+  G    S AV+ ++ D+ K +Y  QSV + +L  + +  R  L+LK
Sbjct: 793 TGKFVGLVLPSYAVESRQVDIEKAFYSNQSVTAYLLRTDDDNERFLLTLK 842



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 189/808 (23%), Positives = 339/808 (41%), Gaps = 129/808 (15%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQ-------QLPSDASHIHPNSVVHGYVCNIIETGCF 778
            ++L +DN   +++ + K SL+N  +          +  S  + N    G V +    GC 
Sbjct: 544  RILNVDNHG-HIIATMKKSLVNDEELEKPVIESFETAKSIKNKNEKTVGTVQSFNGHGCV 602

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + F G +TGF P+S+  +           +GQ+V+  +L+V+ E  RI ++    C  S 
Sbjct: 603  IMFFGGVTGFLPKSEVSEVFVKRAEDHLRLGQTVQVKVLEVDEERRRIIVT----CKVSN 658

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE-- 896
            + +  Q+  +   KI                      S+IE  V E     V+V   +  
Sbjct: 659  EEAQQQKSIIESLKIGQ--------------------SIIETVVVEKTKDSVIVEIPDVG 698

Query: 897  -HSDVY-GFITHHQLAGATVES-----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
                +Y G I+  ++     E      GS +   ++D     ++ +LSLK   +   ++A
Sbjct: 699  IRGVIYVGHISDERIEQCRAEIKKIRIGSKLTGLVIDKDSRTQIFNLSLKKSLM---KDA 755

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEI-----VKENYLVLSLPEYNHSIGYASVSD 1004
             + R         +  K   +H  V +I            ++ L LP Y        +  
Sbjct: 756  QNKRLPTTFAEITKFKKTDPLHGYVKSISSTGVFVAFTGKFVGLVLPSYAVESRQVDI-- 813

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK------K 1058
                   +K F + QSV A +  L +     R LL LKA    + + +  A+       K
Sbjct: 814  -------EKAFYSNQSVTAYL--LRTDDDNERFLLTLKAPKVEKAAETISAENIIDTSIK 864

Query: 1059 SSYDV--GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 1114
            S  D+  G ++ A+I  +K  +L +      HGR+ I+EV D+ +++ +  +  S++K  
Sbjct: 865  SVKDIKLGKILDAKIKGVKKNQLNIILADNVHGRVDISEVFDNYNDIKDKKHPLSHYKAN 924

Query: 1115 QTVTARIIA----KSNKP-----DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1165
              V  +II     KS+K      +  K  ++EL++KPS L   ++      +  D+++G 
Sbjct: 925  DKVRVKIIGHHDLKSHKSLPITHNFVKGTVFELTMKPSQLKSKDVKE---LDIRDITVGD 981

Query: 1166 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP-SELQEFQRRFHIGKAVTGHVLSIN 1224
             +  +V    N    LT++  +KA+L I D + E    ++  +  F +G  +  +V   +
Sbjct: 982  EIIAFVNNYQNSTLWLTVTPTIKAKLSIFDLSEETLMNIKNVEDDFPLGSVLKVNVTGKD 1041

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVGGRISKILSGVGGLVVQIGP 1283
            + K +L++  R  +          S D+++   H  G IV      +L  +   +  I  
Sbjct: 1042 QNKSILQVTQRNGKIN--------SIDDLKVGGHTIGKIVKVTPKYLLIELENKITGIST 1093

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
             L     FTE        PL        D +    E +FVK K   I+  +     V+L 
Sbjct: 1094 ALEALNDFTE--------PL--------DQVFAGKENEFVKAK---ITSVIADEKKVQLQ 1134

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
            L           + D ST V     H     DL    +V G VK VT KG F+ L + ++
Sbjct: 1135 L-----------AEDEST-VQKITSH----SDLKVGEVVNGLVKTVTDKGLFVFLGKSVE 1178

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
            A V +S LSD Y++  +K +   + V G+++S      R+ +TL+ ++        + N 
Sbjct: 1179 AFVPVSKLSDSYLKEWKKFYKPMQPVVGKIVSCNE-DDRILLTLRETEV-NGDLKVLKNY 1236

Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIENT 1491
            S++  GDI  G ++ V  +G+F+ ++NT
Sbjct: 1237 SDIKPGDIFNGTVRNVTDFGVFVKLDNT 1264



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 17/255 (6%)

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKCRIMSSIP 645
            T G I K+      +   N + G +   E  L+   EP      G   + VK +I S I 
Sbjct: 1068 TIGKIVKVTPKYLLIELENKITGISTALE-ALNDFTEPLDQVFAGKENEFVKAKITSVIA 1126

Query: 646  ASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIP 700
              +++ L      + V    S  DL K+G +V+G+V  VT   + V++   G S +  +P
Sbjct: 1127 DEKKVQLQLAEDESTVQKITSHSDL-KVGEVVNGLVKTVTDKGLFVFL---GKSVEAFVP 1182

Query: 701  TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
               L+D   +    K   KP       +V  NE   +LL+ + + +N   ++  + S I 
Sbjct: 1183 VSKLSDS--YLKEWKKFYKPMQPVVGKIVSCNEDDRILLTLRETEVNGDLKVLKNYSDIK 1240

Query: 761  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            P  + +G V N+ + G FV+      +TG A  ++  D    D+   + VG  V++ +L 
Sbjct: 1241 PGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPEDIQSIFGVGDRVKAYVLK 1300

Query: 819  VNSETGRITLSLKQS 833
             N E  +++LSLK S
Sbjct: 1301 SNPEKKQLSLSLKAS 1315



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 3/168 (1%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            + +HSD+K G VV G V  V   G  V     V+A  P+  +S+  + +  K +K    +
Sbjct: 1145 ITSHSDLKVGEVVNGLVKTVTDKGLFVFLGKSVEAFVPVSKLSDSYLKEWKKFYKPMQPV 1204

Query: 550  VFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 607
            V +++   +  RI +T ++T V   L +L +Y++     I +G +  +   G FV+  N 
Sbjct: 1205 VGKIVSCNEDDRILLTLRETEVNGDLKVLKNYSDIKPGDIFNGTVRNVTDFGVFVKLDNT 1264

Query: 608  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              V G A  +E+  +   +  S++ VG  VK  ++ S P  ++++LS 
Sbjct: 1265 ANVTGLAHITEIADEVPEDIQSIFGVGDRVKAYVLKSNPEKKQLSLSL 1312



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 233/586 (39%), Gaps = 82/586 (13%)

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRT 290
            L  YVKSI   G  + F    F G +  +   E+  +D++        +   ++R+ D  
Sbjct: 776  LHGYVKSISSTGVFVAF-TGKFVGLVLPSYAVESRQVDIEKAFYSNQSVTAYLLRTDDDN 834

Query: 291  RKVVYLSSDP------DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 344
             + +     P      +T+S     D    S+  +  G ++  +++ + +N + +     
Sbjct: 835  ERFLLTLKAPKVEKAAETISAENIIDTSIKSVKDIKLGKILDAKIKGVKKNQLNIILADN 894

Query: 345  FTGTVDIFHLQNTF--------PTTNWK------------NDYNQHKKVNARILFVDPTS 384
              G VDI  + + +        P +++K            +D   HK +     FV  T 
Sbjct: 895  VHGRVDISEVFDNYNDIKDKKHPLSHYKANDKVRVKIIGHHDLKSHKSLPITHNFVKGT- 953

Query: 385  RAVGLTLNPYLLHNRAPPSHVKVGDIYD----QSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
                LT+ P  L ++     VK  DI D       +  V+      L +  TP +  A +
Sbjct: 954  -VFELTMKPSQLKSK----DVKELDIRDITVGDEIIAFVNNYQNSTLWLTVTP-TIKAKL 1007

Query: 441  TISDVAEE---EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
            +I D++EE    ++ +E  +  GS ++V + G    +     IL+ +   G + +  D+K
Sbjct: 1008 SIFDLSEETLMNIKNVEDDFPLGSVLKVNVTG----KDQNKSILQVTQRNGKINSIDDLK 1063

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKAL-CPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
             G    GK++ V     +++    +  +   L  +++F   +P  +   G E  F    V
Sbjct: 1064 VGGHTIGKIVKVTPKYLLIELENKITGISTALEALNDF--TEPLDQVFAGKENEF----V 1117

Query: 557  KSKRITVTHKKTLVKSKLA-------ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            K+K  +V   +  V+ +LA        ++S+++     + +G +  +   G FV     V
Sbjct: 1118 KAKITSVIADEKKVQLQLAEDESTVQKITSHSDLKVGEVVNGLVKTVTDKGLFVFLGKSV 1177

Query: 610  QGFAPRSELGLDPGCEPSSMYH-----VGQVVKC----RIMSSIPASRRINLSFMMKPTR 660
            + F P S+L      E    Y      VG++V C    RI+ ++   R   ++  +K  +
Sbjct: 1178 EAFVPVSKLSDSYLKEWKKFYKPMQPVVGKIVSCNEDDRILLTL---RETEVNGDLKVLK 1234

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               D  +K G + +G V  VT   V V +       G      +AD +     ++S+   
Sbjct: 1235 NYSD--IKPGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPED--IQSIFGV 1290

Query: 721  GYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSV 764
            G      ++  N E   L LS K S  N+ + +   A S   P  +
Sbjct: 1291 GDRVKAYVLKSNPEKKQLSLSLKASHFNTNETITEKAESQPQPRKI 1336



 Score = 40.4 bits (93), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL--LSNLSDGYVES 1418
            T+V+   K L+   D+ P  I  G V+NVT  G F+ L    +   L  ++ ++D   E 
Sbjct: 1224 TEVNGDLKVLKNYSDIKPGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPED 1283

Query: 1419 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
             +  F +G  V   VL   P  K++ ++LK S
Sbjct: 1284 IQSIFGVGDRVKAYVLKSNPEKKQLSLSLKAS 1315


>gi|340503389|gb|EGR29983.1| programmed cell death 11, putative [Ichthyophthirius multifiliis]
          Length = 2032

 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 307/1402 (21%), Positives = 583/1402 (41%), Gaps = 205/1402 (14%)

Query: 156  GLRG------LARAADALDPILDNEIEANEDNLLPTIFHVGQ-LVSCIVLQLDDDKKEIG 208
            GL+G      L+R   A   I D   E NE++ L  I++ G+ L+  IV  + +    I 
Sbjct: 137  GLKGQFLIVNLSRNKKAFLTIADAVEEKNEESDL-RIYNQGEYLIGEIVNSIKEGNSNI- 194

Query: 209  KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRN-NL 266
                  S++ S++ +GL    + E M+L   V + E++G  + F     + GFL ++ N+
Sbjct: 195  ------SIKPSVVNEGLQFNEIYENMLLQGKVLTKEEYGIKVVFHTSQQYIGFLKKDKNV 248

Query: 267  AENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID-------- 317
             E+    D++ G +    V   +  +K++YLS    T    + + +   SID        
Sbjct: 249  CEDDQYEDLEEGRVYMFRVEKKENNKKLLYLSLKYTTQE--IKESILNPSIDIEDGSDFH 306

Query: 318  -LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
             L  PG +V+  +  +L NG+++ F   F G +   HL N  P +     Y   +++ AR
Sbjct: 307  HLAKPGNLVNCLIIKVLSNGLVVRFFKQFIGFIFEDHLDNNQPES-----YKVKERILAR 361

Query: 377  ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV--GDIYDQS-KVVRVDRGLGLLLDIPSTP 433
            I+  +   + + L+     +  +A     K   GD++ Q  K+ +V  G   L+ I +T 
Sbjct: 362  IIAANFDQKHINLSAKKVHVDLQAFNQSYKYKPGDVFTQGFKIKKVLYGDSYLVKIQNTS 421

Query: 434  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
            +           A++E  K  + Y +   ++  I  F H             F   V   
Sbjct: 422  IDNGFLHKNQLHADKESFKEGQNYTKALKLK-EINYFEHFPIFTA----KEEFVKNVKNW 476

Query: 494  SDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK---FKV 545
            +D++PGMV+  KV  +     + +   V+    +K +    +  +     P  K   FK 
Sbjct: 477  TDLRPGMVLNVKVEKIIQGHQNQYKVKVEINENIKGIIDYLNTQD----HPQSKNLNFKE 532

Query: 546  GAELVFRVLGV--KSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEKHGCF 602
            G  +  R+L V  + K++ +T K+TLV + +  I+ S+          G+I+     G  
Sbjct: 533  GKRVTVRILSVNLEEKKLKLTAKQTLVNAPEDCIIKSWENIQQNNKYLGYISGKTDFGYI 592

Query: 603  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM------- 655
            ++F+N V+G     ++  +   +  + Y +GQ+++  ++   P ++++ LS         
Sbjct: 593  IQFFNNVKGLLTYKDIE-NLNKKNRNDYKIGQILETYVVFINPLNQKLALSLTEKGFQEA 651

Query: 656  --MKPTRVSEDDLVKLGSLVSGVVDV-----------VTPNAVV--VYVIAKGYSKGTIP 700
               K    S   + ++ SL +  V++           V  N +   V V+     K  +P
Sbjct: 652  QNQKKNNTSRKTVFEMQSLNNEDVELNVNEGDICEYKVDSNNIYKDVIVLFNENHKAILP 711

Query: 701  TEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHI 759
             EHL+D   H  ++   ++      +  +++   + N+L+SAK SL+++    P+    I
Sbjct: 712  LEHLSDFQWHYEILNEHLRSTKGSLKCKIINIFPNKNVLVSAKASLLSNMN--PNCVEDI 769

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILD 818
                +  GY+      G  V+F  R+  F  +    +  + +   +  V  +++ +N ++
Sbjct: 770  KNGYIYTGYIDRGARKGIVVKFNERIKIFVGKESFEENVQFNTYDSVAVLVKNIENNKIN 829

Query: 819  ---VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 875
               +N    R  +S K S  S+          L  E+ A+LQ         K  + F +G
Sbjct: 830  ATLLNENIFRHKMSKKISFFSN----------LFTEQYAVLQDKNK-----KVWQKFKVG 874

Query: 876  SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------GSVIQAAILDVAK 929
            + +   VH   DFG++   E +  + GFI    L     +       G  IQ  I+D+  
Sbjct: 875  NYLNTTVHIIKDFGIITKIEGNDSLTGFILIEHLMNNEAQQKIEIWEGKKIQCKIIDIDF 934

Query: 930  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEI---VKENYL 986
             + ++DL +   F+   ++  +N+Q   +          G  Q +  I E+   V++N+ 
Sbjct: 935  EKEVLDL-IPVDFLP-LKQLINNKQNLDEFFN-------GNFQNIPIIEEVKVLVEKNHY 985

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQF----LNGQSVIATVMALPSSSTAGRL----L 1038
            ++ + +  + I Y + ++ N  +  +K F     N + V   ++      +  +     L
Sbjct: 986  LICIIQNTNIICYVNTNNINNIQHEKKYFNDKIYNVRLVNKDLLDKKKQQSINKSTYVPL 1045

Query: 1039 LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
               K I   +           +   G  V  +I + +   L ++     +G++H T+++D
Sbjct: 1046 YEQKVIRREQNQDQINNTSHVNLVPGEKVSGKILKKQGNNLHVQLRGKLYGKLHKTQLDD 1105

Query: 1099 DKSNVVENLFSNFKIGQTVTARII-AKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLL 1155
             K       F  F+  + +  +I+  K N+ ++    L  LS  +K   L  +   S+  
Sbjct: 1106 QKQ------FGKFQENELIQCKILYVKKNEKNIDIE-LTALSCHLKADFLDENNYLSQYE 1158

Query: 1156 FEECDVSIGQRVTGYVYKVDNE-----WALLTISRHLKAQLFILDSAYEP-SELQEFQRR 1209
                + +I Q+  G V  +D       +  LT S       F L     P S L+  + +
Sbjct: 1159 STFQEKNINQKFLGLVKSIDKSSIHPIYVELTNSHSGYVSAFDL-----PFSHLENIEDK 1213

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            + IG      ++ I + KK L+ + R    GI     ++S         +G ++  +I K
Sbjct: 1214 YSIGNLCDWKIVGIQENKKGLKNI-RLLPAGI-----ELSE------YKQGTLLNVKILK 1261

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
              +  GG+ VQI    +  +H +E   IC        DE +  P   ++ GQ+ K ++LE
Sbjct: 1262 -KNAQGGIRVQISDEKFTNIHISE---IC--------DEWEGVPAEHFESGQYTKGRILE 1309

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE------KIE--------- 1374
                 R   +V++SLR ++     TN ++    +   G  +E      ++E         
Sbjct: 1310 -----RDDENVQISLRQAV-----TNENNWKKALGPSGNTIEYKKIFQEVEKQGDLRNRL 1359

Query: 1375 ------DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1428
                   L   MI  GY+     KGCF+ +S     +V L  LSD Y+E P+  F   KL
Sbjct: 1360 IKLGQGSLKQGMIFVGYINQTNDKGCFVNISYNTIIRVGLQELSDDYLEKPQISFYKNKL 1419

Query: 1429 VAGRVLSVEPLSKRVEVTLKTS 1450
            V GR+  ++   K +E +L+ S
Sbjct: 1420 VVGRITDIKQDGK-IEGSLRDS 1440


>gi|449550992|gb|EMD41956.1| hypothetical protein CERSUDRAFT_147388 [Ceriporiopsis subvermispora
           B]
          Length = 1482

 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 206/857 (24%), Positives = 354/857 (41%), Gaps = 106/857 (12%)

Query: 54  FPRGGGHSLTQRE----RDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS 109
           FPRGGG SLT  E    R E   E + E         K   K ++K++    E  D    
Sbjct: 50  FPRGGGTSLTPLEVKALRAEAVQEANEELFDSPDAAQKPANKSRRKSDVSGKEKKDS-KD 108

Query: 110 LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP 169
             GD I          +  K +  GMK+   V  V    L++ +P  L        A  P
Sbjct: 109 RKGDTI------RVEHLNYKRVEVGMKILAQVVSVEPLALIVSMPNQLF-------AHVP 155

Query: 170 I--LDNEIEANEDNL-----------------------LPTIFHVGQLVSCIVLQL---- 200
           I  + +E+    + +                       L  +F  GQ V  +V  +    
Sbjct: 156 ITHISSELTERLEKMGEDDEENSEDEETEEAGSARVPDLVELFKPGQYVRAVVTTVHAPG 215

Query: 201 -----------DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
                      DD +K    R++ LS+    +  G++   V+ G  + A +KS+EDHGYI
Sbjct: 216 STDVSGLGRARDDVQK--ASRRVELSIVPEKVNGGVAKADVRPGFTMAAAIKSVEDHGYI 273

Query: 250 LHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
           L+ G+P  +GFL   + A+    + K    G LL   V  +    +   ++ DP  +   
Sbjct: 274 LNLGVPEISGFLSFKDAAKCYPQNSKKLHVGQLLDVSVTKVAGNGRTCNVTVDPQEIHSS 333

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
              ++  ++   ++PG +V + + ++  +G+ L  L +F GTVD FHL    P  N    
Sbjct: 334 SISEISNVTS--VLPGALVQSLITAVHPDGLNLQVLGFFGGTVDQFHLLPGEPEVN---- 387

Query: 367 YNQHKKVNARILF----VDPTSRAVG-----LTLNPYLLHNRAPPSHVKVGDIY------ 411
           Y    KV AR+L+      P   A+      L+L+P         S   + D Y      
Sbjct: 388 YKVGTKVKARVLYDLHQSSPPRFALSLAEHVLSLSPKHTDGSKESSGSTLFDAYPVGCTL 447

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRIL 468
           D  +V+RV+   GL+  +  +P     +V IS V+++ +  L      +K G+  + R+ 
Sbjct: 448 DAVEVIRVESERGLITRV--SP-EVEGFVHISHVSDDHIPSLSSSSGTWKIGTTHKARVT 504

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
           G   L+G+    L+ S          +V+ G ++KG V  +      V   G V  +   
Sbjct: 505 GHFPLDGMLQLSLRPSILSQKFLQVGEVQVGEIIKGTVKKLTDSALFVSISGNVDGVVWP 564

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 586
            H ++  +  P K+FK GA +  R+L V    KRI +T KKTL+ S L I+  + +A   
Sbjct: 565 NHYADIILKHPQKRFKPGASIKCRILVVDPARKRIALTAKKTLLDSTLPIIRKFEDAQVG 624

Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
           L+TH  + K       V FYNG++   P  E            + VG+ V  RI++    
Sbjct: 625 LVTHAVVFKTTDKILQVEFYNGLKAVVPLREASESAVTSLPEAFPVGKPVTVRIITVDTE 684

Query: 647 SRRINLSF-MMKPT---RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           + RI  S     PT    V++   V++G+ V G +  V  + +V+  +        +   
Sbjct: 685 TSRITASIRQASPTYKSAVTDISGVEIGNTVEGTISDVRKDQIVL-TLQPTQVTALLSLN 743

Query: 703 HLADHLEHATV-MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA---SH 758
           +LA+    +   +++ +K G +  +L+V+        +    S  +    +P ++     
Sbjct: 744 NLANRRNVSVAQLRTRLKIGDKLQELVVVSRNPEKGFVLVASSPKDKVALVPKNSLSLDT 803

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY--VGQSVRSNI 816
           I    +V G V   +  G  V+    ++G    +   D      S T +  V   +++ +
Sbjct: 804 IQVGQLVGGRVLRHVRQGALVKLTQSISGVLHPTDTCDDYE---SGTPFPPVDSIIKAVV 860

Query: 817 LDVNSETGRITLSLKQS 833
           + V+ E  ++TLS + S
Sbjct: 861 IAVDKEKRQLTLSTRSS 877



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 220/490 (44%), Gaps = 53/490 (10%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
            K PQK+F  G S+   ++ +       R  + L A      S+    +K     VG +  
Sbjct: 573  KHPQKRFKPGASIKCRILVV----DPARKRIALTAKKTLLDSTLPIIRKFEDAQVGLVTH 628

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
            A + +     L+++F  G    + + E ++   + V +L   F +G+ VT RII      
Sbjct: 629  AVVFKTTDKILQVEFYNGLKAVVPLREASE---SAVTSLPEAFPVGKPVTVRIIT----V 681

Query: 1129 DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1188
            D + S      I  S+   S      + +   V IG  V G +  V  +  +LT+     
Sbjct: 682  DTETS-----RITASIRQASPTYKSAVTDISGVEIGNTVEGTISDVRKDQIVLTLQPTQV 736

Query: 1189 AQLFILDSAYEPSELQ--EFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKT 1245
              L  L++      +   + + R  IG  +   V+ S N EK  + +   P      DK 
Sbjct: 737  TALLSLNNLANRRNVSVAQLRTRLKIGDKLQELVVVSRNPEKGFVLVASSP-----KDKV 791

Query: 1246 VDISNDNMQ-TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              +  +++    I  G +VGGR+ + +    G +V++   + G +H T        D   
Sbjct: 792  ALVPKNSLSLDTIQVGQLVGGRVLRHVRQ--GALVKLTQSISGVLHPT--------DTCD 841

Query: 1305 GYDEGQ-FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1363
             Y+ G  F P+        +K  V+ + +  R    + LS RSS    +  N   L+   
Sbjct: 842  DYESGTPFPPVDS-----IIKAVVIAVDKEKR---QLTLSTRSSR--FNPDNRKALA--- 888

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
                + L  ++ LSP   V+G++K+V   G F+ML R +DA+V +  L D +V+  +  F
Sbjct: 889  ---DRELVGLDALSPGDSVRGFIKSVAEHGLFVMLGRNIDARVQIKELFDEFVKDWKSRF 945

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
             + +LV GR++SV+   K+VE++ ++ D  T S S    L++L  G  + G++KRVE YG
Sbjct: 946  TVNQLVKGRIVSVDREKKQVEMSFRSGDI-TKSASTKLTLADLSEGQKINGRVKRVEEYG 1004

Query: 1484 LFITIENTNL 1493
            LFI IE + L
Sbjct: 1005 LFIEIEGSKL 1014



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 123/256 (48%), Gaps = 17/256 (6%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKP-GLLLQ 281
            LSL+T+Q G ++   V      G ++     S +G L   +  ++  SG    P   +++
Sbjct: 799  LSLDTIQVGQLVGGRVLRHVRQGALVKL-TQSISGVLHPTDTCDDYESGTPFPPVDSIIK 857

Query: 282  GVVRSIDRTRKVVYLSS-----DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
             VV ++D+ ++ + LS+     +PD       ++L G+  D L PG  V   ++S+ E+G
Sbjct: 858  AVVIAVDKEKRQLTLSTRSSRFNPDNRKALADRELVGL--DALSPGDSVRGFIKSVAEHG 915

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + +         V I  L + F   +WK+ +  ++ V  RI+ VD   + V ++     +
Sbjct: 916  LFVMLGRNIDARVQIKELFDEF-VKDWKSRFTVNQLVKGRIVSVDREKKQVEMSFRSGDI 974

Query: 397  HNRAPPSHVKVGDIYDQSKVV-RVDR--GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRK 452
              ++  + + + D+ +  K+  RV R    GL ++I  + +S   + + +SD  + +V  
Sbjct: 975  -TKSASTKLTLADLSEGQKINGRVKRVEEYGLFIEIEGSKLSGLCHKSELSDNKDADVTL 1033

Query: 453  LEKKYKEGSCVRVRIL 468
              + ++EG  V+ +IL
Sbjct: 1034 ALRSFREGDAVKAKIL 1049



 Score = 45.1 bits (105), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            I++G VK +T    F+ +S  +D  V  ++ +D  ++ P+K F  G  +  R+L V+P  
Sbjct: 537  IIKGTVKKLTDSALFVSISGNVDGVVWPNHYADIILKHPQKRFKPGASIKCRILVVDPAR 596

Query: 1441 KRVEVTLKTS 1450
            KR+ +T K +
Sbjct: 597  KRIALTAKKT 606



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 34/251 (13%)

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AISETETSSSKRAKKKS---SYDV 1063
            P+  +  G  V A V+     S+  R  L L     ++S   T  SK +   +   +Y V
Sbjct: 384  PEVNYKVGTKVKARVLYDLHQSSPPRFALSLAEHVLSLSPKHTDGSKESSGSTLFDAYPV 443

Query: 1064 GSLVQA-EITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            G  + A E+  ++    L  +      G +HI+ V+DD    + +    +KIG T  AR+
Sbjct: 444  GCTLDAVEVIRVESERGLITRVSPEVEGFVHISHVSDDHIPSLSSSSGTWKIGTTHKARV 503

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
                         + +LS++PS+L      S+   +  +V +G+ + G V K+ +    +
Sbjct: 504  TGH-----FPLDGMLQLSLRPSIL------SQKFLQVGEVQVGEIIKGTVKKLTDSALFV 552

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL--------- 1232
            +IS ++     +  + Y    L+  Q+RF  G ++   +L ++  +K + L         
Sbjct: 553  SISGNVDG--VVWPNHYADIILKHPQKRFKPGASIKCRILVVDPARKRIALTAKKTLLDS 610

Query: 1233 ---VLRPFQDG 1240
               ++R F+D 
Sbjct: 611  TLPIIRKFEDA 621



 Score = 41.2 bits (95), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 25/181 (13%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G  V+  I  +    L +  G     R+ I E+ D+    V++  S F + Q V  RI++
Sbjct: 901  GDSVRGFIKSVAEHGLFVMLGRNIDARVQIKELFDE---FVKDWKSRFTVNQLVKGRIVS 957

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
               +   KK    E+S +   +T S   +KL     D+S GQ++ G V +V+ E+ L   
Sbjct: 958  VDRE---KKQV--EMSFRSGDITKS-ASTKLTL--ADLSEGQKINGRVKRVE-EYGLF-- 1006

Query: 1184 SRHLKAQLFILDSAYEPSELQEFQ--------RRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
               ++ +   L      SEL + +        R F  G AV   +LSI+ EK+ + L L+
Sbjct: 1007 ---IEIEGSKLSGLCHKSELSDNKDADVTLALRSFREGDAVKAKILSIDVEKRRISLGLK 1063

Query: 1236 P 1236
            P
Sbjct: 1064 P 1064


>gi|336376655|gb|EGO04990.1| hypothetical protein SERLA73DRAFT_157761 [Serpula lacrymans var.
           lacrymans S7.3]
          Length = 1437

 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 206/836 (24%), Positives = 359/836 (42%), Gaps = 96/836 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAE-VD-AEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGGG S T  E   I AE VD A  + + +G   KN              VD +    
Sbjct: 50  FPRGGGTSFTPLEVKAIRAEGVDEANVKLISQGHILKN-------------NVDSI---- 92

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL-------------- 157
                 K P     +  K I  GMK++G +  ++   L++ LP  +              
Sbjct: 93  ------KNPTLKECLNYKRIVPGMKIFGQIMFIHPLALIVSLPNRIVAHVPVTQVTSQLT 146

Query: 158 -RGLARAADALDPILDNEIEANEDNL-----LPTIFHVGQLVSCIVLQL----DDDKKEI 207
            R  +  A+ + P   + IE   ++      L  +F+ GQ V  IV+        D   +
Sbjct: 147 ERLESTPANTVQPGEYSHIENGWNSSFHIPELAHLFYPGQYVRAIVIATHAAGSADVCGL 206

Query: 208 GK---------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
           GK         R+I LSL    +  G+    +  G  ++A ++S+EDHGYI   G+   +
Sbjct: 207 GKVRNDAIRASRRIELSLIPERVNAGVQKSDLTTGFTMSAALRSVEDHGYIFDLGISDTS 266

Query: 259 GFLPRNNL--AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI 316
           GFL   +   A  +      G L++  V  +    +   LS DP+ ++     ++  +S 
Sbjct: 267 GFLSFKDYRKAHVNTNHFVVGSLVEVCVTEMSTDGRNCTLSVDPELLASASLSEVTHVSS 326

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
             ++PG MV + + S    G+ L  L +F G V+ FHL    P    + +Y   +KV AR
Sbjct: 327 --ILPGSMVQSLIISAKPAGLNLKLLHFFNGVVNEFHL----PAGEME-EYKVGRKVKAR 379

Query: 377 ILFVDPTSR----AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
           +L+   +S     AV L  +   L  +       +G + +  +V +++   GL++++   
Sbjct: 380 VLYSVHSSPYPTFAVSLADHIIGLKKKEEVESYPIGTVLEAVRVNKLEGEQGLIVEVQP- 438

Query: 433 PVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
                 +V IS ++++ V  L     +K  +  R R+ G   L+G+    L+ S  E   
Sbjct: 439 --GVEGFVHISQISDDHVLSLSATGPWKLNTIHRGRVTGLHPLDGILQLSLRRSVLEQKF 496

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
               ++  G V++G +  +      +     V  +    H ++  I  P  +FK+G  + 
Sbjct: 497 LEAGEILVGEVLRGTIKQMTKSALFISISANVDGVVWPNHYADIAIKHPTLRFKLGVSIK 556

Query: 551 FRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            RVL + S  +RI +T KKTLV+S L ILSSY +    L+T   ++KI      V FYN 
Sbjct: 557 CRVLTIDSEQRRIVLTAKKTLVESTLPILSSYDDDNIGLVTDAAVSKILDKAIQVEFYNN 616

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS-------SIPASRRINLSFMMKPTRV 661
           V+   P  E+G   G + +  + VG+VVK RI+S        + + R++ L+       +
Sbjct: 617 VKAIIPLQEVGQVTG-KLADEFSVGKVVKVRIISIDAKNQRMVASIRQVTLNVQSVAATI 675

Query: 662 SEDDLVKLGSLVSGVV-DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIK 719
           +    V++GS V G+V ++ T N  +   +    +   I   +LA+H    +  ++  +K
Sbjct: 676 TG---VEIGSTVEGIVTEIHTRN--IALSLQPTQAPALISLRNLANHYGTTSAKLEMSLK 730

Query: 720 PGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            G   D+L+V+    E   +L+          ++       I    VV G V     +G 
Sbjct: 731 VGDRVDRLVVVSRNLEKDFVLVVGNLRGRAVIKKGAVSMDTIEIGQVVGGRVTRHCHSGA 790

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            V+   R++G    +   D   A +S    V   +++ ++ ++      TLS + S
Sbjct: 791 HVKISTRISGSLHPTDVSDNYDAGIS-FLPVDSILKAVVIGIDKSNNHATLSTRPS 845



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 202/442 (45%), Gaps = 52/442 (11%)

Query: 1059 SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
            SSYD   +G +  A +++I    ++++F       I + EV      V   L   F +G+
Sbjct: 586  SSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVG----QVTGKLADEFSVGK 641

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
             V  RII+   K     +     SI+   L V  + + +      V IG  V G V ++ 
Sbjct: 642  VVKVRIISIDAKNQRMVA-----SIRQVTLNVQSVAATI----TGVEIGSTVEGIVTEIH 692

Query: 1176 NEWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRL 1232
                 L++       L  L   + +  +   + +    +G  V   V+ S N EK  + L
Sbjct: 693  TRNIALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFV-L 751

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
            V+   +     K   +S D ++     G +VGGR+++      G  V+I   + G +H T
Sbjct: 752  VVGNLRGRAVIKKGAVSMDTIEI----GQVVGGRVTRHCHS--GAHVKISTRISGSLHPT 805

Query: 1293 ELKNICVSDPLSGYDEG-QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
            +     VSD    YD G  F P+        +K  V+ I ++     H  LS R S    
Sbjct: 806  D-----VSD---NYDAGISFLPVD-----SILKAVVIGIDKS---NNHATLSTRPSRFLP 849

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
              T    L TD     + ++   +L     V+G+VK+V+  G F+ML R +DA+V +  L
Sbjct: 850  VKTG---LVTD-----REIKAFAELKTGDTVRGFVKSVSEHGLFVMLGRGIDARVQIKEL 901

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1471
             + +V+  +  F   ++V G +LSV+ L+K+VE+T ++ D  T   ++    ++LH G  
Sbjct: 902  FNTFVKDWKSRFTANQVVKGSILSVDVLTKKVEMTFRSRD-LTRDGTDSFTFADLHQGQK 960

Query: 1472 VIGQIKRVESYGLFITIENTNL 1493
            V G++KR+E YGLFI I+ + L
Sbjct: 961  VTGRVKRIELYGLFIEIDGSTL 982


>gi|340727098|ref|XP_003401888.1| PREDICTED: protein RRP5 homolog [Bombus terrestris]
          Length = 1510

 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 156/617 (25%), Positives = 284/617 (46%), Gaps = 39/617 (6%)

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP--------I 170
           +P  A +++   IS G+ + G + EV   DL+I LPGGL G A+  D  +         +
Sbjct: 171 VPNTAERLSYATISEGLVVLGCIYEVTNYDLLISLPGGLIGRAQITDISECYTNLLQSLV 230

Query: 171 LDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETV 230
              + + NE   LP ++  G  V C V  +   ++     +I +SL  +L+ + L +  +
Sbjct: 231 KSQDSQTNEFKSLPELYTCGDYVVCYVKAIQSQER----LQILISLEPNLINQSLDVNYL 286

Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT 290
             G  +   + SIEDHGY++  GL +   F+P    + N     K  L     V++ + T
Sbjct: 287 DSGSKIVCTISSIEDHGYVVDTGLINVRAFIPTKE-SGNEKCLCKQLLCYVKEVKTNENT 345

Query: 291 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
             +  L+     V      ++K  S+D L+PG   +  ++ +L NG+ +S      G ++
Sbjct: 346 STIT-LTLKQKLVKAICETEIK--SLDSLMPGTKFNLSIKKVLSNGLCVSLDENNVGFIN 402

Query: 351 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDI 410
             +L    P + + N+     K+   +L++ PT +    +    +  NR   + +K GD+
Sbjct: 403 QTYLDE--PLSKYSNNL----KITGTLLYILPTIKFAYFS--STIDKNR--DNTIKPGDV 452

Query: 411 YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
             ++ V+  + G G++L +  + +    +V+    + E    +EK +  G+  + RIL +
Sbjct: 453 VKEATVLFRESG-GIVLQLAKSGIR--GFVSFKRTSVEYDTIIEK-FAPGTTHKCRILSY 508

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLP 529
             L+G+    ++ S  E   F+ SD KPG VV  K+  +D     V    G         
Sbjct: 509 SWLDGIYICTMQRSLLEQKYFSLSDFKPGDVVNVKITNIDKVNGFVNVQYGKFNGQIAPD 568

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRL 587
           H+S+ E +   KK KV  E+  RVL V    K++ +T K++L+ S L IL++  +A    
Sbjct: 569 HISD-EGLSALKKLKVDKEVEARVLFVHIGRKKVYLTLKRSLITSDLPILANIQDAKTDS 627

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
             H  I +I KHG  V+F+  V+G+ P + L  +     +  Y +GQ +  +I +    S
Sbjct: 628 KHHATIIQIHKHGILVKFFGDVKGWIPHTALDTET-FNINWNYSIGQTILVKIQTVNTDS 686

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSKGTIPTEHL 704
             I LS   +  +  E     +G  V+G +   +   + + +     +  S G +P  H+
Sbjct: 687 GEITLSVANQDIQ-DEKATFHIGEEVAGTIIESSTQGLYLKISKNEGQTVSTGFLPAGHM 745

Query: 705 ADHLEHATVMKSVIKPG 721
           +  +E A ++ S   PG
Sbjct: 746 SPCMEIAALLASKYVPG 762



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 22/241 (9%)

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
           V +   ++ FAP    G    C   S   +  +  C +  S+   +  +LS   KP  V 
Sbjct: 486 VEYDTIIEKFAP----GTTHKCRILSYSWLDGIYICTMQRSLLEQKYFSLS-DFKPGDVV 540

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
              +  +   V+G V+V             G   G I  +H++D  E  + +K  +K   
Sbjct: 541 NVKITNIDK-VNGFVNV-----------QYGKFNGQIAPDHISD--EGLSALKK-LKVDK 585

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           E + ++L +      + L+ K SLI S   + ++      +S  H  +  I + G  V+F
Sbjct: 586 EVEARVLFVHIGRKKVYLTLKRSLITSDLPILANIQDAKTDSKHHATIIQIHKHGILVKF 645

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            G + G+ P + A+D +  +++  Y +GQ++   I  VN+++G ITLS+         A+
Sbjct: 646 FGDVKGWIPHT-ALDTETFNINWNYSIGQTILVKIQTVNTDSGEITLSVANQDIQDEKAT 704

Query: 842 F 842
           F
Sbjct: 705 F 705


>gi|350424715|ref|XP_003493888.1| PREDICTED: protein RRP5 homolog [Bombus impatiens]
          Length = 1529

 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 170/685 (24%), Positives = 307/685 (44%), Gaps = 66/685 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG     ++  D +       F+  E+   +  +K++ K + K              
Sbjct: 146 FPRGGKEVQKRKPSDLL-------FDKYEKIGKRNCEKQRAKKQDK-------------- 184

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPI 170
           G    +P  A +++   IS G+ + G + EV   DL+I LPGGL G A+  D       +
Sbjct: 185 GEPNFIPNTAERLSYATISEGLVVLGCIYEVTNYDLLISLPGGLVGRAQITDISECYTNL 244

Query: 171 LDNEIEA-----NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIW---LSLRLSLLY 222
           L + +++     NE   L  ++  G  V C V       K I  ++ W   +SL  SL+ 
Sbjct: 245 LQSLVKSQDSLTNELKSLSELYTYGDYVVCYV-------KAIQPQETWQISISLEPSLIN 297

Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
           + L +  +  G  +   + SIEDHGY++  GL +   F+     + N     K  L    
Sbjct: 298 QSLDVTYLDSGSKIVCTISSIEDHGYVVDTGLINVRAFISTKE-SGNKKCLCKQLLCYVK 356

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            V++ + T  ++    +    + C T ++K  S+D L+PG   +  ++ +L NG+ +S  
Sbjct: 357 EVKTNENTSTIILTLKEKLVKAICET-EIK--SLDSLMPGTKFNLSIKKVLSNGLCVSLD 413

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
               G ++  +L    P + + N+     K+   +L++ PT +    +    +  NR   
Sbjct: 414 ENNIGFINQTYLDE--PLSKYSNNL----KITGTLLYILPTIKFAYFS--STIDKNR--D 463

Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
             +K GD+  ++ V+  + G G++L +  + +    +V+    + E    +EK +  G+ 
Sbjct: 464 YTIKPGDVVKEATVLFRESG-GIVLQLAKSGIR--GFVSFKRTSVEYDTIIEK-FAPGTT 519

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GG 521
            + RIL +  L+G+    ++ S  E   F+ SD KPG VV  K+  +D     +    G 
Sbjct: 520 HKCRILSYSWLDGIYICTMQRSLLEQKYFSLSDFKPGDVVNVKITNIDKVNGFINVQHGK 579

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS 579
                   H+S+ E +   KK KV  E+  RVL V    KRI +T K++L+ S L IL++
Sbjct: 580 FNGQIAPDHISD-EGLSALKKLKVDEEVEARVLSVHIDRKRIYLTLKRSLITSDLPILAN 638

Query: 580 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 639
             +A      H  I +I K G  V+F+  V+G+ P + L +      +  Y +GQ +  +
Sbjct: 639 IQDAKIDAKHHATIIQIHKRGILVKFFGDVKGWIPHTALDMLTS-NVNWNYSIGQTISVK 697

Query: 640 IMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSK 696
           I +    S  I L+   +  +V E+    +G  V G +   +   + + +     +  S 
Sbjct: 698 IQTVNTDSGEITLNVANQDIQV-EEATFDIGEEVEGTIIESSTQGLYLRICRNEGQTVST 756

Query: 697 GTIPTEHLADHLEHATVMKSVIKPG 721
           G +P  H++  +E A ++ S   PG
Sbjct: 757 GFLPAGHMSPCMEIAALLASKYVPG 781



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 22/241 (9%)

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
           V +   ++ FAP    G    C   S   +  +  C +  S+   +  +LS   KP  V 
Sbjct: 505 VEYDTIIEKFAP----GTTHKCRILSYSWLDGIYICTMQRSLLEQKYFSLS-DFKPGDVV 559

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
              +  +   V+G ++V             G   G I  +H++D  E  + +K  +K   
Sbjct: 560 NVKITNIDK-VNGFINV-----------QHGKFNGQIAPDHISD--EGLSALKK-LKVDE 604

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           E + ++L +  +   + L+ K SLI S   + ++      ++  H  +  I + G  V+F
Sbjct: 605 EVEARVLSVHIDRKRIYLTLKRSLITSDLPILANIQDAKIDAKHHATIIQIHKRGILVKF 664

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            G + G+ P + A+D   ++++  Y +GQ++   I  VN+++G ITL++        +A+
Sbjct: 665 FGDVKGWIPHT-ALDMLTSNVNWNYSIGQTISVKIQTVNTDSGEITLNVANQDIQVEEAT 723

Query: 842 F 842
           F
Sbjct: 724 F 724


>gi|336389636|gb|EGO30779.1| hypothetical protein SERLADRAFT_444441 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 1430

 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 202/834 (24%), Positives = 358/834 (42%), Gaps = 88/834 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG S T  E   I AE          G+ + N K         +   +++ S+   
Sbjct: 39  FPRGGGTSFTPLEVKAIRAE----------GVDEANVKLISVNFLIRHILKNNVDSI--- 85

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL---------------R 158
               K P     +  K I  GMK++G +  ++   L++ LP  +               R
Sbjct: 86  ----KNPTLKECLNYKRIVPGMKIFGQIMFIHPLALIVSLPNRIVAHVPVTQVTSQLTER 141

Query: 159 GLARAADALDPILDNEIEANEDNL-----LPTIFHVGQLVSCIVLQL----DDDKKEIGK 209
             +  A+ + P   + IE   ++      L  +F+ GQ V  IV+        D   +GK
Sbjct: 142 LESTPANTVQPGEYSHIENGWNSSFHIPELAHLFYPGQYVRAIVIATHAAGSADVCGLGK 201

Query: 210 ---------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
                    R+I LSL    +  G+    +  G  ++A ++S+EDHGYI   G+   +GF
Sbjct: 202 VRNDAIRASRRIELSLIPERVNAGVQKSDLTTGFTMSAALRSVEDHGYIFDLGISDTSGF 261

Query: 261 LPRNNL--AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL 318
           L   +   A  +      G L++  V  +    +   LS DP+ ++     ++  +S   
Sbjct: 262 LSFKDYRKAHVNTNHFVVGSLVEVCVTEMSTDGRNCTLSVDPELLASASLSEVTHVSS-- 319

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
           ++PG MV + + S    G+ L  L +F G V+ FHL    P    + +Y   +KV AR+L
Sbjct: 320 ILPGSMVQSLIISAKPAGLNLKLLHFFNGVVNEFHL----PAGEME-EYKVGRKVKARVL 374

Query: 379 FVDPTSR----AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
           +   +S     AV L  +   L  +       +G + +  +V +++   GL++++     
Sbjct: 375 YSVHSSPYPTFAVSLADHIIGLKKKEEVESYPIGTVLEAVRVNKLEGEQGLIVEVQP--- 431

Query: 435 STPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
               +V IS ++++ V  L     +K  +  R R+ G   L+G+    L+ S  E     
Sbjct: 432 GVEGFVHISQISDDHVLSLSATGPWKLNTIHRGRVTGLHPLDGILQLSLRRSVLEQKFLE 491

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
             ++  G V++G +  +      +     V  +    H ++  I  P  +FK+G  +  R
Sbjct: 492 AGEILVGEVLRGTIKQMTKSALFISISANVDGVVWPNHYADIAIKHPTLRFKLGVSIKCR 551

Query: 553 VLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL + S  +RI +T KKTLV+S L ILSSY +    L+T   ++KI      V FYN V+
Sbjct: 552 VLTIDSEQRRIVLTAKKTLVESTLPILSSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVK 611

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS-------SIPASRRINLSFMMKPTRVSE 663
              P  E+G   G + +  + VG+VVK RI+S        + + R++ L+       ++ 
Sbjct: 612 AIIPLQEVGQVTG-KLADEFSVGKVVKVRIISIDAKNQRMVASIRQVTLNVQSVAATITG 670

Query: 664 DDLVKLGSLVSGVV-DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPG 721
              V++GS V G+V ++ T N  +   +    +   I   +LA+H    +  ++  +K G
Sbjct: 671 ---VEIGSTVEGIVTEIHTRN--IALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVG 725

Query: 722 YEFDQLLVLDN--ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
              D+L+V+    E   +L+          ++       I    VV G V     +G  V
Sbjct: 726 DRVDRLVVVSRNLEKDFVLVVGNLRGRAVIKKGAVSMDTIEIGQVVGGRVTRHCHSGAHV 785

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           +   R++G    +   D   A +S    V   +++ ++ ++      TLS + S
Sbjct: 786 KISTRISGSLHPTDVSDNYDAGIS-FLPVDSILKAVVIGIDKSNNHATLSTRPS 838



 Score =  100 bits (248), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 202/442 (45%), Gaps = 52/442 (11%)

Query: 1059 SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
            SSYD   +G +  A +++I    ++++F       I + EV      V   L   F +G+
Sbjct: 579  SSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVG----QVTGKLADEFSVGK 634

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
             V  RII+   K     +     SI+   L V  + + +      V IG  V G V ++ 
Sbjct: 635  VVKVRIISIDAKNQRMVA-----SIRQVTLNVQSVAATI----TGVEIGSTVEGIVTEIH 685

Query: 1176 NEWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRL 1232
                 L++       L  L   + +  +   + +    +G  V   V+ S N EK  + L
Sbjct: 686  TRNIALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFV-L 744

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
            V+   +     K   +S D ++     G +VGGR+++      G  V+I   + G +H T
Sbjct: 745  VVGNLRGRAVIKKGAVSMDTIEI----GQVVGGRVTRHCHS--GAHVKISTRISGSLHPT 798

Query: 1293 ELKNICVSDPLSGYDEG-QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
            +     VSD    YD G  F P+        +K  V+ I ++     H  LS R S    
Sbjct: 799  D-----VSD---NYDAGISFLPVD-----SILKAVVIGIDKS---NNHATLSTRPSRFLP 842

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
              T    L TD     + ++   +L     V+G+VK+V+  G F+ML R +DA+V +  L
Sbjct: 843  VKTG---LVTD-----REIKAFAELKTGDTVRGFVKSVSEHGLFVMLGRGIDARVQIKEL 894

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1471
             + +V+  +  F   ++V G +LSV+ L+K+VE+T ++ D  T   ++    ++LH G  
Sbjct: 895  FNTFVKDWKSRFTANQVVKGSILSVDVLTKKVEMTFRSRD-LTRDGTDSFTFADLHQGQK 953

Query: 1472 VIGQIKRVESYGLFITIENTNL 1493
            V G++KR+E YGLFI I+ + L
Sbjct: 954  VTGRVKRIELYGLFIEIDGSTL 975


>gi|342321045|gb|EGU12983.1| U3 snoRNP-associated protein Rrp5 [Rhodotorula glutinis ATCC
           204091]
          Length = 1507

 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 197/791 (24%), Positives = 337/791 (42%), Gaps = 106/791 (13%)

Query: 3   ASSRKSQKKSSKDGPK----FNKASKNQFKNSKKQINDAVEAQ---------DLALPPDD 49
           A+SR  +  SS   P+      ++SK      KK+  +  E +          L+L    
Sbjct: 15  AASRPFKAPSSSQPPRRTASTTQSSKPALAGGKKRTREGREDEPEKAVVTQSSLSLLNQP 74

Query: 50  DVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERG-------------LHKKNKKKKKKT 96
           D   FPRGGG  LTQRE  E  A+++ E EA++ G             +  K K K++K 
Sbjct: 75  DEIDFPRGGGTGLTQREVRE--AQLEGEAEAMDDGNDEDRERQKETEVIKDKGKAKRRKL 132

Query: 97  ERKANETVDDLGSLFGDGISGKLPRYANKI---TLKNISAGMKLWGVVAEVNEKDLVICL 153
           ER  N  V             ++P+ A ++     K +  G K+   V +V   ++ + L
Sbjct: 133 ERALNGEVK---------AKNQIPKDAFRVEHLNYKRLIPGTKVLCQVVQVRPLEVTVSL 183

Query: 154 PGGLRG--------------LARAADALDPILDNEIEANEDNL--------LPTIFHVGQ 191
           P  L G              L +A +      + E    ED L        LP +FH GQ
Sbjct: 184 PNQLLGHIPITNISSEFTARLEKAGEEDSDEEEEEESDEEDELAADKGLPGLPALFHTGQ 243

Query: 192 LVSCIVLQL-------------DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 238
            +  +V                + D+     R++ LS+    + +G++   ++ G VL A
Sbjct: 244 YLIAVVTSTAVSDPTKPKLAGREGDETVRSSRRVELSVEPEKVNEGIAKGDLKRGFVLPA 303

Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 298
            V  +E+ GY L FGLP  + FLP  +  + +   +  G ++   +  I    + V ++ 
Sbjct: 304 AVHDVEEKGYTLSFGLPPLSAFLPFADAKKLAPKGLHVGQVVVCRLTKIHSNERTVSVAV 363

Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
           +   ++      +   SI  L+P  +V   V +++  G+ + F  Y+ GT+D FHL  + 
Sbjct: 364 EWADIASTTLDSVS--SITSLLPLQIVPALVTAVMPQGLNVKFHGYYDGTIDRFHLPIS- 420

Query: 359 PTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNRAPPSHVK-------VGD 409
              +    Y + +KV  RIL+  +  T +   L++   ++  R   S VK       VG 
Sbjct: 421 AGEDIAQHYKEGQKVKGRILWDSISQTPKKFALSMREEVV--RLDESRVKALQSEWVVGR 478

Query: 410 IYDQSKVVRVDRGLGLLLDI-PSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVR 466
              Q+K+V VD   GL  +I    PVS  A+V IS + ++ +  + K   ++ G+    R
Sbjct: 479 KC-QAKIVAVDEEWGLTCEIVGDEPVS--AFVHISRITDDHLSTIPKAGPWQIGTVHPAR 535

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
           ++    L+ L    L+ S          DV+ G  VKG V  +      V   G V  + 
Sbjct: 536 VVSLSPLDSLVQLSLQPSILSQSFLRVQDVRVGEEVKGTVKVLRDNALFVSIGGSVDGVV 595

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 584
              H ++  +  P KKFK G  +  RV  V  +  R+ +T KK L+++   ++++ +EA 
Sbjct: 596 WPLHYADIRLKHPEKKFKPGQAVKARVFSVDPEKNRVVLTLKKQLLQTPHPLVTTLSEAK 655

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQVVKCRIMS 642
             L+T   +TK+      V F+ GV+   P +E         +   M+ +G+VV  RI+S
Sbjct: 656 PGLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILS 715

Query: 643 SIPASRRINLSFMMKPTRVSED------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
              AS RI  S        +        + + +G+L +G +  +    +V+  +A+G  K
Sbjct: 716 VDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHETNLVLS-LAEGGIK 774

Query: 697 GTIPTEHLADH 707
             +    LA H
Sbjct: 775 ALLAYPTLARH 785



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 128/242 (52%), Gaps = 24/242 (9%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPH---LYGRVHFTELKNICVSDPLSGYDE-GQFDPLS 1315
            G +  GR++  LS    LV  +G     L GRV  TEL     SD  S   E G+    +
Sbjct: 854  GALYPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTEL-----SDDYSLVSEKGE----A 904

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
             +  G  V+  VL      R    ++LSLR+S   +S+ +    S   D P   +  ++D
Sbjct: 905  LFPVGTNVQAVVLAKDDEQR---RLDLSLRAS-RVLSAQDKPLASPPADAP---VTSVDD 957

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L P   V+G+VKNV + G F+ L R + A+VL+  L D YV+  +  F +G+LV G++LS
Sbjct: 958  LKPGSKVRGFVKNVANAGVFVELGRDITARVLIKELFDEYVKEWKPRFKVGELVEGKILS 1017

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLS----NLHVGDIVIGQIKRVESYGLFITIENT 1491
            V+ +S ++E++ ++S       S   ++S    NL  G +V G IKRV++YG+FI ++ +
Sbjct: 1018 VDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLSRGQVVRGTIKRVQNYGVFIRLDES 1077

Query: 1492 NL 1493
             +
Sbjct: 1078 GV 1079



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 182/831 (21%), Positives = 334/831 (40%), Gaps = 98/831 (11%)

Query: 177  ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
            A+   L P   HVGQ+V C + ++  +++ +     W  +  + L    S+ ++    ++
Sbjct: 329  ADAKKLAPKGLHVGQVVVCRLTKIHSNERTVSVAVEWADIASTTLDSVSSITSLLPLQIV 388

Query: 237  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV----KPGLLLQGVV--RSIDRT 290
             A V ++   G  + F    + G + R +L  ++G D+    K G  ++G +   SI +T
Sbjct: 389  PALVTAVMPQGLNVKFH-GYYDGTIDRFHLPISAGEDIAQHYKEGQKVKGRILWDSISQT 447

Query: 291  RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFL--TYFTG 347
             K   LS   + V +     +K +  + +V G     ++ ++ E  G+    +     + 
Sbjct: 448  PKKFALSMREEVV-RLDESRVKALQSEWVV-GRKCQAKIVAVDEEWGLTCEIVGDEPVSA 505

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVN-ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
             V I  + +   +T  K    Q   V+ AR++ + P    V L+L P +L      S ++
Sbjct: 506  FVHISRITDDHLSTIPKAGPWQIGTVHPARVVSLSPLDSLVQLSLQPSILSQ----SFLR 561

Query: 407  VGDIYDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
            V D+    +V   V+V R   L + I     S    V     A+  ++  EKK+K G  V
Sbjct: 562  VQDVRVGEEVKGTVKVLRDNALFVSIGG---SVDGVVWPLHYADIRLKHPEKKFKPGQAV 618

Query: 464  RVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 520
            + R+      +      LK    +    LV T S+ KPG+V    V  V     +V F G
Sbjct: 619  KARVFSVDPEKNRVVLTLKKQLLQTPHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFG 678

Query: 521  GVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            GV+AL P    +E   ++   G+ F +G  +  R+L V   S RI  + ++    +    
Sbjct: 679  GVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILSVDRASGRIVASARQASAPAASTS 738

Query: 577  LSSYAEATD-RLITHGWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQ 634
             SS  E+ D   +T G I+ + +    +    G ++       L    G    ++   G 
Sbjct: 739  SSSAIESIDVGTLTTGTISALHETNLVLSLAEGGIKALLAYPTLARHRGVSVETLK--GD 796

Query: 635  VVKCRIMSS-IPASRRINLSFM---MKPTRVSED------------------DLVKLGSL 672
            + K + +   +  S+ ++  F+   + P++ +                    D +++G+L
Sbjct: 797  LAKGQKLEDLVVVSKNVDKGFVIVGLVPSKSAAATAAASSSAASTSQPQLTFDRLEVGAL 856

Query: 673  VSG-VVDVVTPNAVVVYVIAKGYS--KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 729
              G V   ++   V+V ++    +  +G +    L+D     +     + P     Q +V
Sbjct: 857  YPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTELSDDYSLVSEKGEALFPVGTNVQAVV 916

Query: 730  L--DNESSNLLLSAKYSLINSAQ-----QLPSDA-----SHIHPNSVVHGYVCNIIETGC 777
            L  D+E   L LS + S + SAQ       P+DA       + P S V G+V N+   G 
Sbjct: 917  LAKDDEQRRLDLSLRASRVLSAQDKPLASPPADAPVTSVDDLKPGSKVRGFVKNVANAGV 976

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            FV     +T      +  D    +    + VG+ V   IL V+  + +I +S + S    
Sbjct: 977  FVELGRDITARVLIKELFDEYVKEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVK 1036

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
             DAS      L +  ++                    G V+ G +    ++GV +  +E 
Sbjct: 1037 KDASAPTSVSLADANLSR-------------------GQVVRGTIKRVQNYGVFIRLDE- 1076

Query: 898  SDVYGFITHHQLAG-------ATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            S V G     ++           V  G  ++A +L V   ++ + L LK V
Sbjct: 1077 SGVEGLCHKSKIVDDEKRSWKEVVREGQKVKAVVLSVDLEKKKLSLGLKNV 1127



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 97/431 (22%), Positives = 179/431 (41%), Gaps = 57/431 (13%)

Query: 1066 LVQAEITEIKPLELRLKFGIGFHG---RIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +V A +T + P  L +KF   + G   R H+        +  E++  ++K GQ V  RI+
Sbjct: 387  IVPALVTAVMPQGLNVKFHGYYDGTIDRFHLP------ISAGEDIAQHYKEGQKVKGRIL 440

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
              S     KK   + LS++  ++ + E   K L  + +  +G++    +  VD EW L  
Sbjct: 441  WDSISQTPKK---FALSMREEVVRLDESRVKAL--QSEWVVGRKCQAKIVAVDEEWGLTC 495

Query: 1183 -ISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
             I        F+  S      L    +   + IG      V+S++    L++L L+P   
Sbjct: 496  EIVGDEPVSAFVHISRITDDHLSTIPKAGPWQIGTVHPARVVSLSPLDSLVQLSLQP--S 553

Query: 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
             +S   + + +      +  G+ V G + K+L     L V IG  + G V      +I +
Sbjct: 554  ILSQSFLRVQD------VRVGEEVKGTV-KVLRD-NALFVSIGGSVDGVVWPLHYADIRL 605

Query: 1300 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1359
              P     E +F P      GQ VK +V  +         V L+L+  L           
Sbjct: 606  KHP-----EKKFKP------GQAVKARVFSVDPEKN---RVVLTLKKQL----------- 640

Query: 1360 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1419
               + TP   +  + +  P ++    V  V  K   +     + A V  +  ++ + +  
Sbjct: 641  ---LQTPHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVA 697

Query: 1420 E--KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1477
            +  + FP+GK+VA R+LSV+  S R+  + + + +  AS S  + + ++ VG +  G I 
Sbjct: 698  DLGRMFPLGKVVAVRILSVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTIS 757

Query: 1478 RVESYGLFITI 1488
             +    L +++
Sbjct: 758  ALHETNLVLSL 768



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 18/193 (9%)

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP-----DMKKSFLWELSIK 1141
              GR+ +TE++DD S V E   + F +G  V A ++AK ++       ++ S +     K
Sbjct: 882  LRGRVALTELSDDYSLVSEKGEALFPVGTNVQAVVLAKDDEQRRLDLSLRASRVLSAQDK 941

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
            P     S      +    D+  G +V G+V  V N    + + R + A++ I +   E  
Sbjct: 942  P---LASPPADAPVTSVDDLKPGSKVRGFVKNVANAGVFVELGRDITARVLIKELFDE-- 996

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF----QDGISDKTVDISNDNMQTFI 1257
             ++E++ RF +G+ V G +LS++K    + +  R      +D  +  +V +++ N+    
Sbjct: 997  YVKEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLS--- 1053

Query: 1258 HEGDIVGGRISKI 1270
              G +V G I ++
Sbjct: 1054 -RGQVVRGTIKRV 1065



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 99/472 (20%), Positives = 189/472 (40%), Gaps = 68/472 (14%)

Query: 127  TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTI 186
            TL     G+     V +V +K +++   GG+R L  AA+A +   D          L  +
Sbjct: 650  TLSEAKPGLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVAD-------LGRM 702

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
            F +G++V+  +L +D     I       S   +      ++E++  G + T  + ++ + 
Sbjct: 703  FPLGKVVAVRILSVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHET 762

Query: 247  GYILHFGLPSFTGFLPRNNLAENSGIDVKP--GLLLQG--------VVRSIDRTRKVVYL 296
              +L          L    LA + G+ V+   G L +G        V +++D+   +V L
Sbjct: 763  NLVLSLAEGGIKALLAYPTLARHRGVSVETLKGDLAKGQKLEDLVVVSKNVDKGFVIVGL 822

Query: 297  SSDPDTVSKCVTKDLKG------ISIDLLVPGMMVSTRVQSILENGVMLSFL-----TYF 345
                   +               ++ D L  G +   RV S L +GV+L  L        
Sbjct: 823  VPSKSAAATAAASSSAASTSQPQLTFDRLEVGALYPGRVTSSLSSGVVLVQLVGSRNASL 882

Query: 346  TGTVDIFHLQNTFPTTNWKND--YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR---- 399
             G V +  L + +   + K +  +     V A +L  D   R + L+L    + +     
Sbjct: 883  RGRVALTELSDDYSLVSEKGEALFPVGTNVQAVVLAKDDEQRRLDLSLRASRVLSAQDKP 942

Query: 400  --APPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEV 450
              +PP+   V  + D     +V RG        G+ +++        A V I ++ +E V
Sbjct: 943  LASPPADAPVTSVDDLKPGSKV-RGFVKNVANAGVFVELGR---DITARVLIKELFDEYV 998

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEG------LATGILK--ASAFEGLVFTHSDVKPGMVV 502
            ++ + ++K G  V  +IL    +         ++ ++K  ASA   +    +++  G VV
Sbjct: 999  KEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLSRGQVV 1058

Query: 503  KGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEF---------EIVKPGKKFK 544
            +G +  V ++G  ++    GV+ LC   H S+          E+V+ G+K K
Sbjct: 1059 RGTIKRVQNYGVFIRLDESGVEGLC---HKSKIVDDEKRSWKEVVREGQKVK 1107


>gi|388855273|emb|CCF51167.1| related to RRP5-processing of pre-ribosomal RNA [Ustilago hordei]
          Length = 1566

 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 151/560 (26%), Positives = 257/560 (45%), Gaps = 53/560 (9%)

Query: 183 LPTIFHVGQLVSCIVLQL------------DDDKKEIGKRKIWLSLRLSLLYKGLSLETV 230
           L  +FHVGQ +   V+Q+            +  + E   R++ LSL   L+  G++L  +
Sbjct: 236 LRDLFHVGQWLVASVVQVRGGDVAKGRPTREGGEYEKESRRVELSLAPHLVNTGVTLSDL 295

Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--NSGIDVKPGLLLQ------G 282
             G  L+A + S+EDHGY+L  G+P F GF+P  + A+  +S    K G LLQ       
Sbjct: 296 DAGATLSASISSVEDHGYMLDSGIPEFRGFVPFADAAKLPSSFHARKNGKLLQVGSVVFA 355

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            +  I   R+    + DP TVS    K +   SI  ++PG +    + + L  G+ +   
Sbjct: 356 KITKIPENRRSFEATFDPKTVSTSPIKHVP--SITSILPGTLTKVLITAALPTGLNVKLF 413

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 389
             F  T+D FHL       + ++ Y +  K  AR+L+  + P S           R  GL
Sbjct: 414 GMFDATIDRFHLPQLPEGKDIQDVYKEGSKHVARVLWDLLAPPSTALQGDNPDHERKFGL 473

Query: 390 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 442
           +L P +L  +AP +       H        + KVV+     GL++ I +T +    +V I
Sbjct: 474 SLAPQVLALQAPVAKDQQLLQHAYPIGAPLKVKVVQTINDWGLIVSIHNTDLR--GFVHI 531

Query: 443 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           S V+++ V  L      + +G+  + R++G    +      LKAS  E      S+V+ G
Sbjct: 532 SQVSDDHVVSLPPSSGPFAKGTEHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 591

Query: 500 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
            +V   +I +     I +Q  G V  +    H ++ ++  P K+FK G ++  RV+ V  
Sbjct: 592 EIVNANIIKLGLPNTIFLQLHGHVDGVVFANHFADVKLTHPEKRFKPGLQVKARVMDVDP 651

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
              RI +T KK+LVKS L I++S  +A   ++TH  + +++ +   V  + G++   P  
Sbjct: 652 SRNRIVLTCKKSLVKSDLPIVASMQDARVGVVTHATVFRVQTNSLIVSLFGGLKALVPGR 711

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---DLVKLGSLV 673
           E+  D   +    +  G+VVK RI      ++++  S     +        D V++G  V
Sbjct: 712 EVSEDDFNDVKDSFTEGKVVKMRITEVDYENQKLVGSIKQASSEYLAKLNVDAVEVGEKV 771

Query: 674 SGVVDVVTPNAVVVYVIAKG 693
           +G V  V    VV+ ++  G
Sbjct: 772 TGKVAAVHKEVVVLSLVPSG 791



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 161/661 (24%), Positives = 288/661 (43%), Gaps = 106/661 (16%)

Query: 871  GFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSV 919
             + IG+ ++ KV ++ ND+G++VS   ++D+ GF+   Q++   V S          G+ 
Sbjct: 496  AYPIGAPLKVKVVQTINDWGLIVSIH-NTDLRGFVHISQVSDDHVVSLPPSSGPFAKGTE 554

Query: 920  IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
             +A ++  +  +R + LSLK   ++R             K  R +  ++G         E
Sbjct: 555  HKARVVGHSPTDRTLQLSLKASVLER-------------KFMRVSEVEVG---------E 592

Query: 980  IVKENYLVLSLPE------YNHSIGYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSS 1031
            IV  N + L LP       + H  G    + +   K   P+K+F  G  V A VM +  S
Sbjct: 593  IVNANIIKLGLPNTIFLQLHGHVDGVVFANHFADVKLTHPEKRFKPGLQVKARVMDVDPS 652

Query: 1032 STAGRLLLLLK-AISETE---TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
                R++L  K ++ +++    +S + A+      VG +  A +  ++   L +    G 
Sbjct: 653  RN--RIVLTCKKSLVKSDLPIVASMQDAR------VGVVTHATVFRVQTNSLIVSLFGGL 704

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
               +   EV++D  N V++ F+    G+ V  RI     + D +   L   SIK +    
Sbjct: 705  KALVPGREVSEDDFNDVKDSFTE---GKVVKMRI----TEVDYENQKLVG-SIKQAS--- 753

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILD--SAYEPSELQE 1205
            SE  +KL  +   V +G++VTG V  V  E  +L++       L  L   +A   +  + 
Sbjct: 754  SEYLAKLNVDA--VEVGEKVTGKVAAVHKEVVVLSLVPSGVRALLSLSVLAAMRGTTSEA 811

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
                      +   V+S+    K + +V    + G S      +       + +G +V G
Sbjct: 812  LLESLEEDHEIEDLVVSVKNPAKGIVIVADKVRSGKSTDHSAANGTATSAQVKQGAVVQG 871

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
            R+ +  S     +V +G     ++H T+L     SD  S       +P      GQ V C
Sbjct: 872  RVIEKNSKYLDCIVALGTATRAKLHITDL-----SDNYSSDSSTLPNP------GQSVLC 920

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
             +L +    +      +S R S     +T S  +   VD     +  I DL+    ++G+
Sbjct: 921  YILSLKPNGKSAV---ISTRPS----RTTGSGGI---VDP---EISSISDLTKGQKIRGF 967

Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
            VK +T+ G FI + RKLDA+V +  L D +V   +  F +G++V+G ++ + P +  VE+
Sbjct: 968  VKAITNVGLFITIGRKLDARVQVRELFDEFVRDWKTRFTLGQVVSGTIMDLNPGNNEVEM 1027

Query: 1446 TLKTSDSRTASQSE-------------INNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            +LK++      ++E                L++  VGD V G IK +  +G+F+ IE TN
Sbjct: 1028 SLKSTPGSIKPRAEKVEERAQAMQKQRPKRLTDFKVGDKVKGFIKNIIGFGVFVQIEGTN 1087

Query: 1493 L 1493
            +
Sbjct: 1088 V 1088



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 148/666 (22%), Positives = 260/666 (39%), Gaps = 97/666 (14%)

Query: 240  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP--GLLLQGVVRSIDRTRKVVYLS 297
            V++I D G I+        GF+  + ++++  + + P  G   +G     +   +VV  S
Sbjct: 508  VQTINDWGLIVSIHNTDLRGFVHISQVSDDHVVSLPPSSGPFAKGT----EHKARVVGHS 563

Query: 298  SDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSI-LENGVMLSFLTYFTGTVDIFH 353
                T+    K    + K + +  +  G +V+  +  + L N + L    +  G V   H
Sbjct: 564  PTDRTLQLSLKASVLERKFMRVSEVEVGEIVNANIIKLGLPNTIFLQLHGHVDGVVFANH 623

Query: 354  LQN---TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP--------- 401
              +   T P   +K       +V AR++ VDP+   + LT    L+ +  P         
Sbjct: 624  FADVKLTHPEKRFKPGL----QVKARVMDVDPSRNRIVLTCKKSLVKSDLPIVASMQDAR 679

Query: 402  ---PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
                +H  V  +   S +V +  GL              A V   +V+E++   ++  + 
Sbjct: 680  VGVVTHATVFRVQTNSLIVSLFGGL-------------KALVPGREVSEDDFNDVKDSFT 726

Query: 459  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD-VKPGMVVKGKVIAVDSFGAIVQ 517
            EG  V++RI    +      G +K ++ E L   + D V+ G  V GKV AV     ++ 
Sbjct: 727  EGKVVKMRITEVDYENQKLVGSIKQASSEYLAKLNVDAVEVGEKVTGKVAAVHKEVVVLS 786

Query: 518  F-PGGVKALCPLPHMSEFEIVKPG---KKFKVGAELVFRVLGVK--SKRITVTHKKTLVK 571
              P GV+AL  L  ++           +  +   E+   V+ VK  +K I +   K    
Sbjct: 787  LVPSGVRALLSLSVLAAMRGTTSEALLESLEEDHEIEDLVVSVKNPAKGIVIVADKVRSG 846

Query: 572  SKLAILSSYAEATDRLITHGWITK---IEKHG----CFVRFYNGVQGFAPRSELGLDPGC 624
                  ++   AT   +  G + +   IEK+     C V      +     ++L  +   
Sbjct: 847  KSTDHSAANGTATSAQVKQGAVVQGRVIEKNSKYLDCIVALGTATRAKLHITDLSDNYSS 906

Query: 625  EPSSMYHVGQVVKCRIMSSIP----------ASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            + S++ + GQ V C I+S  P           SR      ++ P   S  DL K G  + 
Sbjct: 907  DSSTLPNPGQSVLCYILSLKPNGKSAVISTRPSRTTGSGGIVDPEISSISDLTK-GQKIR 965

Query: 675  GVVDVVTPNAVVVYVIAKGYSKGTIPT---EHLADHLEHATVMKSV------IKPGYEFD 725
            G V  +T   + + +  K  ++  +     E + D     T+ + V      + PG    
Sbjct: 966  GFVKAITNVGLFITIGRKLDARVQVRELFDEFVRDWKTRFTLGQVVSGTIMDLNPG---- 1021

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQ-----------QLPSDASHIHPNSVVHGYVCNIIE 774
                 +NE    L S   S+   A+           Q P   +       V G++ NII 
Sbjct: 1022 -----NNEVEMSLKSTPGSIKPRAEKVEERAQAMQKQRPKRLTDFKVGDKVKGFIKNIIG 1076

Query: 775  TGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G FV+  G  ++G A  ++  DG+  +  K + VG  VR+ +L VN E  +I+  LK S
Sbjct: 1077 FGVFVQIEGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRVNEEKRKISFGLKPS 1136

Query: 834  CCSSTD 839
               + D
Sbjct: 1137 YFDAAD 1142



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 18/187 (9%)

Query: 765  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
            + G+V  I   G F+    +L       +  D    D    + +GQ V   I+D+N    
Sbjct: 964  IRGFVKAITNVGLFITIGRKLDARVQVRELFDEFVRDWKTRFTLGQVVSGTIMDLNPGNN 1023

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
             + +SLK     ST  S       +EE+   +Q  +      K +  F +G  ++G +  
Sbjct: 1024 EVEMSLK-----STPGSIKPRAEKVEERAQAMQKQRP-----KRLTDFKVGDKVKGFIKN 1073

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLS 937
               FGV V   E ++V G    ++L+    +        G  ++A +L V + +R +   
Sbjct: 1074 IIGFGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRVNEEKRKISFG 1132

Query: 938  LKTVFID 944
            LK  + D
Sbjct: 1133 LKPSYFD 1139


>gi|452846030|gb|EME47963.1| hypothetical protein DOTSEDRAFT_147032, partial [Dothistroma
           septosporum NZE10]
          Length = 1780

 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 196/851 (23%), Positives = 347/851 (40%), Gaps = 92/851 (10%)

Query: 53  VFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
            FPRGG   LT  ER +I A+ + +    E G                    D+ G LF 
Sbjct: 57  AFPRGGAEVLTPIERKQIQAQAERDVLLEEEG--------------GVTNAADEDGELFD 102

Query: 113 ---------------DGISG----KLPRYANK-ITLKNISAGMKLWGVVAEVNEKDLVIC 152
                          DG  G    K+     + ++ KN+  G  + G V  +  +D+ + 
Sbjct: 103 EEAAAPAKKKQKKTRDGEKGDKKLKITEVRKEGLSYKNLVVGSSVLGRVTAITGRDIALA 162

Query: 153 LPGGLRGLA-------RAADALDPILDNEIEANEDNL----LPTIFHVGQLVSCIVLQLD 201
           LP  L G A       R    ++ +L ++ +  ++      L  +F+VGQ +   +    
Sbjct: 163 LPNNLTGFAPILSISERLTSRIERLLASDEKPEDEEDEDVDLKQLFYVGQWLRASITATG 222

Query: 202 DDKKEIGKRK--IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSF 257
            + K+  K K  I LSL  + +   L  E V     + A V+S+EDHG ++  GL   S 
Sbjct: 223 TEPKDGSKSKKHIELSLDPAAVNGALREENVVTNSTIQAAVRSVEDHGIVMDIGLSESSV 282

Query: 258 TGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK---- 312
            GF  +  L     +D ++ G +L  +V     + KVV L+ DP   S   T++ K    
Sbjct: 283 KGFASKKALGSAYSLDQIQEGQVLLCLVTGKASSGKVVNLTPDPSKFS-VATREGKDKDK 341

Query: 313 ------GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH-LQNTFPTTNWKN 365
                   ++D  +PG  V   +      G+    +     T D+ H   + FP  N K 
Sbjct: 342 MPFVAEAPTVDAFLPGTAVDVLITETGPKGIAGKIMGMLDVTSDVVHSAASQFPDMNQK- 400

Query: 366 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
            Y    K  ARI+F  P       T +     ++     + +    + +KV  +    G+
Sbjct: 401 -YRVGSKAKARIIFSIPQDDGARKTKSEATELSQP----LALSSTLEDAKVTSIVADRGI 455

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKA 483
            L++        A+  IS +++ +V  +     YK  S  +VRI  +  ++ +    LK 
Sbjct: 456 FLELTD---GKKAFAHISQLSDSKVDSISTAGPYKPESTHKVRITAYNPVDNIYYVSLKK 512

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAV------DSFGAIVQFPGGVKALCPLPHMSEFEIV 537
           S  +       D+  G VV G V  +         G +V+    +  L P  H+S+  + 
Sbjct: 513 SVLDQPFLRLEDLPIGGVVTGTVDKLILGGKSGVTGVLVKLSDSITGLVPEMHLSDAHLT 572

Query: 538 KPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
            P +KF+ G  +  R+L V +++  + VT KK+LV     + + Y +    + + G I  
Sbjct: 573 HPERKFREGYPIKGRILSVDTEKRHVRVTLKKSLVDDSATVWNDYKDLQPGMESKGTIVS 632

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           +  +G  V+FY  V+ + P +E+      +P   + +GQ V  ++++  P S+ + ++  
Sbjct: 633 LLPNGAAVQFYGPVRAWLPVAEMSETFIEKPEKHFRLGQTVTVKVLNVKPESQEMKVTCK 692

Query: 656 MKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEH 710
              T   E     + +  G LVS  V     +++   +      +GTI   H+ D     
Sbjct: 693 DSSTFDDEQQSAWNALSGGQLVSATVSEKLADSITAEL--DNGIRGTIRIGHVIDGPASK 750

Query: 711 ATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSAQQLPSDASHI--HPNSVVH 766
           A      I+ G +   LLVL  +  S  ++LS K S+I  ++      S +       VH
Sbjct: 751 AEKELKRIRVGQKLSNLLVLTKQERSHTVVLSNKPSMIEDSKACALIKSFVDAREGQKVH 810

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G+V NI   G +  F   + G  P+++      A  S      Q+V + ++  +    R 
Sbjct: 811 GFVRNITPEGVYAEFANGIVGLIPKNQVPADSLAQPSFGLRKDQTVTAYVIGTDGIHERF 870

Query: 827 TLSLKQSCCSS 837
            LS+++   ++
Sbjct: 871 ILSMREQAATN 881



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 204/440 (46%), Gaps = 49/440 (11%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTAR 1120
            +G +V+A I  IK  ++ ++      GR+ ++E  D  D+ N        FK    +  +
Sbjct: 911  LGRVVKARIASIKATQMNVRLADNVQGRVDVSEAFDSWDEINNKAAPLQKFKHNDLIDVK 970

Query: 1121 IIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            ++   +  + +         K  ++ELS K S +   E G + L     V  G     +V
Sbjct: 971  VLGIHDARNHRFLPISHRQGKVPVFELSAKKSRV---EAGDEALLGLDSVQPGSTYLAFV 1027

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
                +    + +S +++ ++ ++D + +  +LQ  + RF IG A+   V S++     L 
Sbjct: 1028 NNHGDNCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVKVKSVDVSANRLD 1087

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L  R  +       V   ND     +  G ++  R++K    +  + VQI   + G V  
Sbjct: 1088 LTARHNESS----EVKTLND-----LKAGMVIPARVTKTTERL--VNVQITDTISGVVPL 1136

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
             EL +          D  Q +P + Y++   V+  VL +    +  F   LSLR S    
Sbjct: 1137 AELSD----------DFEQANP-AQYNKNDIVRACVLAVDVPNKKIF---LSLRPS---- 1178

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
                   LS+ + T    +     L    IV+G++K+VT KG F+ L   +DA V +S+L
Sbjct: 1179 -----KVLSSSLPTTDAQVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGATVDALVRISDL 1233

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1471
            SD +V+  +    I +LV GR++SV+  +K+V+++LK S     + +   N+ ++  GD 
Sbjct: 1234 SDRFVKDWKSLHEIDQLVKGRIMSVDHATKQVQMSLKQSHV-DGNYTPPLNIGDIKAGDT 1292

Query: 1472 VIGQIKRVESYGLFITIENT 1491
            V G++++VE +G F+ IENT
Sbjct: 1293 VTGRVRKVEDFGAFVDIENT 1312



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 142/327 (43%), Gaps = 32/327 (9%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGL 278
            L L++VQ G    A+V +  D+   ++   P+  G +   +L+++ G         + G 
Sbjct: 1012 LGLDSVQPGSTYLAFVNNHGDNCVWVNLS-PNVRGRVALMDLSDDVGQLQNVENRFRIGC 1070

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVT-KDLKGISIDLLVPGMMVSTRVQSILENGV 337
             L+  V+S+D +   + L++  +  S+  T  DLK         GM++  RV    E  V
Sbjct: 1071 ALRVKVKSVDVSANRLDLTARHNESSEVKTLNDLKA--------GMVIPARVTKTTERLV 1122

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LL 396
             +      +G V +  L + F   N    YN++  V A +L VD  ++ + L+L P  +L
Sbjct: 1123 NVQITDTISGVVPLAELSDDFEQAN-PAQYNKNDIVRACVLAVDVPNKKIFLSLRPSKVL 1181

Query: 397  HNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEE 449
             +  P +  +V D     KV  + RG        G+ + + +T     A V ISD+++  
Sbjct: 1182 SSSLPTTDAQVSDT-GSLKVGNIVRGFIKHVTDKGVFVSLGAT---VDALVRISDLSDRF 1237

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKGKV 506
            V+  +  ++    V+ RI+   H        LK S  +G         D+K G  V G+V
Sbjct: 1238 VKDWKSLHEIDQLVKGRIMSVDHATKQVQMSLKQSHVDGNYTPPLNIGDIKAGDTVTGRV 1297

Query: 507  IAVDSFGAIVQFPGGVKALCPLPHMSE 533
              V+ FGA V        L  L H SE
Sbjct: 1298 RKVEDFGAFVDIENTQPRLSGLCHRSE 1324



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 112/240 (46%), Gaps = 36/240 (15%)

Query: 1260 GDIVGGRISKIL----SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
            G +V G + K++    SGV G++V++   + G V    L +  ++ P   + EG   P+ 
Sbjct: 528  GGVVTGTVDKLILGGKSGVTGVLVKLSDSITGLVPEMHLSDAHLTHPERKFREGY--PIK 585

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
            G         ++L +    R   HV ++L+ SL   S+T  +D               +D
Sbjct: 586  G---------RILSVDTEKR---HVRVTLKKSLVDDSATVWNDY--------------KD 619

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L P M  +G + ++   G  +     + A + ++ +S+ ++E PEK F +G+ V  +VL+
Sbjct: 620  LQPGMESKGTIVSLLPNGAAVQFYGPVRAWLPVAEMSETFIEKPEKHFRLGQTVTVKVLN 679

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVR 1495
            V+P S+ ++VT K  DS T    + +  + L  G +V   +   E     IT E  N +R
Sbjct: 680  VKPESQEMKVTCK--DSSTFDDEQQSAWNALSGGQLVSATVS--EKLADSITAELDNGIR 735



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 138/321 (42%), Gaps = 50/321 (15%)

Query: 542  KFKVGAELVFRV--LGVKSKRITVTHK-------KTL--VKSKLAILSSYAEATDRLITH 590
            +F++G  L  +V  + V + R+ +T +       KTL  +K+ + I +   + T+RL+  
Sbjct: 1065 RFRIGCALRVKVKSVDVSANRLDLTARHNESSEVKTLNDLKAGMVIPARVTKTTERLVN- 1123

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RI 640
                        V+  + + G  P +EL  D      + Y+   +V+           +I
Sbjct: 1124 ------------VQITDTISGVVPLAELSDDFEQANPAQYNKNDIVRACVLAVDVPNKKI 1171

Query: 641  MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
              S+  S+ ++ S      +VS+   +K+G++V G +  VT   V V + A       + 
Sbjct: 1172 FLSLRPSKVLSSSLPTTDAQVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGA--TVDALVR 1229

Query: 701  TEHLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSD 755
               L+D        KS+    +E DQL     + +D+ +  + +S K S ++     P +
Sbjct: 1230 ISDLSDRF--VKDWKSL----HEIDQLVKGRIMSVDHATKQVQMSLKQSHVDGNYTPPLN 1283

Query: 756  ASHIHPNSVVHGYVCNIIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
               I     V G V  + + G FV       RL+G   RS+    +  D+ K Y  G  V
Sbjct: 1284 IGDIKAGDTVTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVV 1343

Query: 813  RSNILDVNSETGRITLSLKQS 833
            ++ +L V+ E  +I+L LK S
Sbjct: 1344 KAKVLSVDVENRKISLGLKAS 1364



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 106/495 (21%), Positives = 198/495 (40%), Gaps = 80/495 (16%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM--SEFEI---VKPGKKFKVGAE 548
            +++  G VVK ++ ++ +    V+    V+    +     S  EI     P +KFK    
Sbjct: 907  AEITLGRVVKARIASIKATQMNVRLADNVQGRVDVSEAFDSWDEINNKAAPLQKFKHNDL 966

Query: 549  LVFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDRLIT--------HGWITK 595
            +  +VLG+   R    + ++H++  V   +L+   S  EA D  +           ++  
Sbjct: 967  IDVKVLGIHDARNHRFLPISHRQGKVPVFELSAKKSRVEAGDEALLGLDSVQPGSTYLAF 1026

Query: 596  IEKHG--C-FVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPASRRI 650
            +  HG  C +V     V+G     +L  D G      + + +G  ++ ++ S   ++ R+
Sbjct: 1027 VNNHGDNCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVKVKSVDVSANRL 1086

Query: 651  NLSFMMKPTRVSEDDLVK-LGSLVSGVV---DVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            +L+      R +E   VK L  L +G+V    V      +V V       G +P   L+D
Sbjct: 1087 DLT-----ARHNESSEVKTLNDLKAGMVIPARVTKTTERLVNVQITDTISGVVPLAELSD 1141

Query: 707  HLEHATVMK----SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDA 756
              E A   +     +++       +L +D  +  + LS + S + S+  LP      SD 
Sbjct: 1142 DFEQANPAQYNKNDIVRAC-----VLAVDVPNKKIFLSLRPSKVLSSS-LPTTDAQVSDT 1195

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
              +   ++V G++ ++ + G FV     +      S   D    D    + + Q V+  I
Sbjct: 1196 GSLKVGNIVRGFIKHVTDKGVFVSLGATVDALVRISDLSDRFVKDWKSLHEIDQLVKGRI 1255

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            + V+  T ++ +SLKQS     D ++               +   N  ++K       G 
Sbjct: 1256 MSVDHATKQVQMSLKQSHV---DGNY---------------TPPLNIGDIK------AGD 1291

Query: 877  VIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE-------SGSVIQAAILDVA 928
             + G+V +  DFG  V  E     + G     ++A   VE       +G V++A +L V 
Sbjct: 1292 TVTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVVKAKVLSVD 1351

Query: 929  KAERLVDLSLKTVFI 943
               R + L LK  + 
Sbjct: 1352 VENRKISLGLKASYF 1366


>gi|405120627|gb|AFR95397.1| ribosomal RNA processing protein RRP5 [Cryptococcus neoformans var.
           grubii H99]
          Length = 1483

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 194/799 (24%), Positives = 347/799 (43%), Gaps = 101/799 (12%)

Query: 4   SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLT 63
           S++K+QK+SS   P+   A  +  +N                    D   FPRGGG SLT
Sbjct: 14  STKKTQKESSSAAPRPAPAFTSTLQN--------------------DETDFPRGGGSSLT 53

Query: 64  Q------RERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER-KANETVDDLGSLFGDGIS 116
                  RE     AE +A+ +A  +G  +K +   ++ +R K NE          D I 
Sbjct: 54  AFEFKQVREEGRREAEDEAKLQA-SKGEKRKRQMSDRQAKRLKKNEDAKKKEERDKDNIR 112

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN 173
            ++  Y      K +  G  +   V  +    L++ LP  L     +   +D L  +L  
Sbjct: 113 VEILNY------KRLVPGTHVLARVHTILPLHLILSLPNNLLAHVPITEISDTLTQLLTA 166

Query: 174 E------------IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE--------IGKRKIW 213
           E             + +    L  +F  GQ V   VL L     +            K+ 
Sbjct: 167 EEAMVVDEGEEESDDESSAPDLAQLFVAGQYVPAKVLTLYPTASQSFISQYPVTETTKLA 226

Query: 214 LSLRLSLLYKGLSLETVQE----GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRN 264
             + L+L+ K ++ E  ++    G  L   VKS ED G+I+  GL      S  GF+ ++
Sbjct: 227 SRVELTLIPKKVNSEVAKKDLETGYYLVGEVKSEEDKGWIVGVGLDAQDGSSVEGFVSKD 286

Query: 265 NLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323
            +A++     + PG LL   + SI    +VV+LS D   +++    ++   ++  ++PG 
Sbjct: 287 EVAKSVPAQALVPGQLLSATISSIAAGGRVVHLSLDQQDIARSQISEVS--TVGSILPGH 344

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---- 379
            V+  + +++ +G+ +    +F GT+D+ HL       + ++ Y   KK+ AR+++    
Sbjct: 345 SVNALITAVVPSGLNVKVAGFFDGTIDLAHL--PLGEIDIEDKYKIGKKIRARVIYDNLA 402

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIP 430
            +P S A  L+  P++L+  +P            + +G +Y   KV RV    G+++   
Sbjct: 403 ANPHSFA--LSALPHVLNFTSPIQKGDDTPLELAIPIGKVYQSVKVTRVLNDWGVVV--- 457

Query: 431 STPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            T      +V IS +A+E +  L     ++K G+  R R++G   ++G+     + S   
Sbjct: 458 RTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLS 517

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
            L    S++K G  +KG +  +      V   G V  +    H ++  +  P K+FK  A
Sbjct: 518 QLFMQVSELKIGQQLKGTIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEA 577

Query: 548 ELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            +  RVL ++    R+ +T KKT ++S LA+   + +     +T G + KI   G  V  
Sbjct: 578 SVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFDDLKVGELTLGSVLKIVDKGVIVEL 637

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           + G++ F P SE       + S  ++VG+ +  R+++  P++ RI +S            
Sbjct: 638 FAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITVDPSASRIVVSAKQASPTAPATA 697

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPG 721
             KL  G  VSG V  V    VVV +   G +   +   +L++   H  +  ++  +K G
Sbjct: 698 AEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRGSLKEG 755

Query: 722 YEFDQLLVLD-NESSNLLL 739
            + D L+V+  N  S L++
Sbjct: 756 EKIDDLVVVSKNPVSGLII 774



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 27/238 (11%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  G I+ G + +  S   G +VQ+  +L GRVH       C S        G+  PL+ 
Sbjct: 808  IEVGQIITGTVQEQNSQ--GYMVQLPNNLRGRVHS------CDSSDDLALAAGR-GPLT- 857

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               G+ VKC VL ++R+ R    ++LS R S ++G  +    +++T           ++D
Sbjct: 858  --VGEEVKCYVLAVNRSKRA---IDLSTRLSRVEGKENVVDREVNT-----------VDD 901

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L     V+G VKN+   G F+ L R + A++++  L D YV+  E  F I +LV+G++LS
Sbjct: 902  LKQGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWESRFEINQLVSGKILS 961

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            + P S  +E+TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+
Sbjct: 962  INPRSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNV 1019



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 18/243 (7%)

Query: 600 GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           G  VR  +G++GF   S L    +      +  +  G + + R++   P    + LSF  
Sbjct: 454 GVVVRTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQ 513

Query: 657 KP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 710
                   +VSE   +K+G  + G +  +T    +++V   G   G +   H AD  L+H
Sbjct: 514 SVLSQLFMQVSE---LKIGQQLKGTIRRLTDK--MLFVNVHGNVDGIVHPTHYADIRLKH 568

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
               +   KP      ++L L+   + ++L+ K + + S   +P     +    +  G V
Sbjct: 569 P---QKRFKPEASVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFDDLKVGELTLGSV 625

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             I++ G  V     L  F P S+       DLS+ +YVG+ +   ++ V+    RI +S
Sbjct: 626 LKIVDKGVIVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITVDPSASRIVVS 685

Query: 830 LKQ 832
            KQ
Sbjct: 686 AKQ 688



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 131/272 (48%), Gaps = 14/272 (5%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGIDVKPGLLLQG-- 282
            +++ ++ G ++T  V+     GY++   LP+   G +   + +++  +    G L  G  
Sbjct: 804  AIDAIEVGQIITGTVQEQNSQGYMVQ--LPNNLRGRVHSCDSSDDLALAAGRGPLTVGEE 861

Query: 283  ---VVRSIDRTRKVVYLSSDPDTVS-KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
                V +++R+++ + LS+    V  K    D +  ++D L  G  V   V++I  +GV 
Sbjct: 862  VKCYVLAVNRSKRAIDLSTRLSRVEGKENVVDREVNTVDDLKQGESVRGLVKNIAGHGVF 921

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            +S     T  + I  L + +   +W++ +  ++ V+ +IL ++P S ++ +TL      +
Sbjct: 922  VSLGRNVTARIMIKELFDEY-VKDWESRFEINQLVSGKILSINPRSNSIEMTLRKNPSKS 980

Query: 399  RAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLE 454
                + + + D  +  KVV V R     G+ L I  + VS   + + ++D  + +V +  
Sbjct: 981  AKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADVAQAL 1040

Query: 455  KKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
            K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1041 KGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|255595431|ref|XP_002536303.1| hypothetical protein RCOM_1962080 [Ricinus communis]
 gi|223520127|gb|EEF26080.1| hypothetical protein RCOM_1962080 [Ricinus communis]
          Length = 109

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 94/110 (85%), Gaps = 1/110 (0%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            GYVKNV  KGCFI LSRK+DAK+LLSNLSD +V SPE+EFPIGKLV GRVLSVEPLSKRV
Sbjct: 1    GYVKNVAPKGCFIFLSRKIDAKILLSNLSDEFVVSPEEEFPIGKLVTGRVLSVEPLSKRV 60

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            EVTLK  ++++  +SE+N+LS L+VGD   G+IKRVE YGLFI I++TNL
Sbjct: 61   EVTLK-KNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGLFIAIDHTNL 109


>gi|355709767|gb|AES03702.1| programmed cell death 11 [Mustela putorius furo]
          Length = 398

 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 183/381 (48%), Gaps = 39/381 (10%)

Query: 54  FPRGGGHSLTQRER--------DEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
           FPRGG     + E+        D +  ++  E E+ +R   +K   K KK + +  E+  
Sbjct: 8   FPRGGTRKTHKSEKALQKSVEQDNLF-DLSTEEESTKRKKSQKGPAKTKKLKTEKRESSK 66

Query: 106 DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
            +   F            N + ++++  GM++ G V EVNE +LVI LP GLRG  +  +
Sbjct: 67  SIREKF---------EILNILNIESLCEGMRILGCVKEVNELELVISLPNGLRGFVQVTE 117

Query: 166 ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
             D      NE  A E+ +     LP +F  G LV C+V  +   ++  GK+ + LSL  
Sbjct: 118 ICDAYTKKLNEQVAQEEPVKDLVGLPELFSPGMLVRCVVSSVGITER--GKKSVKLSLNP 175

Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 176 RNVNEVLSAEALKPGMLLTGTVSSLEDHGYVVDIGVSGARAFLPLQKAQEYIRQKNKGAK 235

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
           +K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 236 LKVGQYLHCIIEEVKGNGGVVGLSIGHSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVT 295

Query: 334 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
             G+ L+FL++FTG VD  HL      T + N     + V A +L V P +RAV L+L P
Sbjct: 296 PVGLTLNFLSFFTGLVDFMHLDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRP 350

Query: 394 YLLH--NRAPPSHVKVGDIYD 412
             L      P S   +G + D
Sbjct: 351 VFLQPGRSLPRSCQHLGAVLD 371


>gi|339240195|ref|XP_003376023.1| putative S1 RNA binding domain protein [Trichinella spiralis]
 gi|316975284|gb|EFV58732.1| putative S1 RNA binding domain protein [Trichinella spiralis]
          Length = 2154

 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 349/1542 (22%), Positives = 628/1542 (40%), Gaps = 266/1542 (17%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKK--KTERKANETVDDLGSLF 111
            FPRGG H      R +I+ +       +   LH + KK K   K + KA  TV +     
Sbjct: 338  FPRGGDH------RGQINFKKRKSL--LPPDLHGRRKKFKTLDKLKSKAT-TVSENNHKV 388

Query: 112  GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL 171
             D  + ++  +  K+  +   AG+     V    + ++ + +PG + G+ +A+      +
Sbjct: 389  DDDFASRV--WTKKLNNETCVAGLLTVACVHYCWDTEVNVEMPGNMNGILKASSVSQSFV 446

Query: 172  DNEIEANEDN---LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKI---WL-SLRLSLLYKG 224
            D+     ED     L ++F   +L+ C+ + +D + ++    K+   WL +   + L   
Sbjct: 447  DHVQAKREDEEAATLASLFEPAELI-CVKV-IDKEMRQFASGKMHTTWLVTTNPADLNAH 504

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLL 280
            ++  T+++  V+   V+S+E+ GY++  G  +  GFL          EN  + +   +L 
Sbjct: 505  ITPSTLRKHAVIGCAVRSVEEKGYLMDLGFQNVHGFLSFAEACRFYPENKQLPIGKPILC 564

Query: 281  QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI---------DLLVPGMMVSTRVQS 331
              V  +     +VV L+        C+   L G  +          LL+PG++  T VQ 
Sbjct: 565  TVVEPAAATGGRVVQLN--------CLNGQLNGTDVPKIDENFPKSLLMPGLLCRTTVQQ 616

Query: 332  ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
              + G++    +   G + +             N+ +    V   + +  P S  VG + 
Sbjct: 617  HCQQGLICKLNSDLYGWLSLADSPKRRKRA-LANEQSLQGAVELMVTYSLPQSSMVGFSS 675

Query: 392  NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT----ISDVAE 447
              YLL            D     +  +V R         STP     ++T    I +VA 
Sbjct: 676  ADYLLRRTRLVERFSF-DAKGSLQTCKVRR---------STPEKV-QFITDSGAIVNVAN 724

Query: 448  EEVRK-------------LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
              +RK             L  K+      RVR++G   L+ +  G   A           
Sbjct: 725  CRLRKPVGKKKKSTEKYKLATKH------RVRMIGMSTLKMVYHGSCLACDVRQPFSKID 778

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQ----FPGGVKALCPLPHMSEFEI-VKPGKKFKVGAEL 549
            +   G+ V  KV+ V    A+V+    F G + AL    H S+  + V    KF VG  +
Sbjct: 779  EAAVGLRVTAKVVRVSDTAALVKVFHTFDGKIDAL----HFSDGLVSVGCRAKFVVGQTV 834

Query: 550  VFRVLGVKS--KRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFY 606
              RVL V    +R+ +T K++LVKS L +LS+Y AEA   +     +  +E+ G  + FY
Sbjct: 835  PTRVLAVDKDLQRLYLTAKRSLVKSDLPLLSAYTAEAVGNVYDGFVVQLLERSGVLIGFY 894

Query: 607  NGVQGFAPRSELGLDPGCE---PSSMYHVGQVV----------KCRIMSSIPASRRINLS 653
            N V+G        L  G +   P+ +YHVGQVV          K RI  ++P      L 
Sbjct: 895  NNVRGVLDERAFQL-AGYQKQSPTDVYHVGQVVRVLVVRVDVDKRRIDLALPECSARGLQ 953

Query: 654  FMMKPT-RVSEDDL-------VKLG----------SLVSGVVDVVTPNAVVVYVIAKGYS 695
            +M+  + +VS   L        + G           L+   V  +  + ++V ++  G S
Sbjct: 954  WMLGCSGKVSNSKLEADVGQCARAGGSKRKPPPFFELLKAEVKALRDDWLLVELVEYGVS 1013

Query: 696  KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLP 753
               +P+ HL D L    ++ +  + G + D  +VL N    L+++AK SL+   +  Q P
Sbjct: 1014 -ARLPSAHLTDSLTTGHLLLASFRVGDKLD--VVLFNSVKGLVVTAKPSLLYLMRNMQAP 1070

Query: 754  SDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
                 +    +V G +  +  E G F+   G ++   P+SK       D      +G +V
Sbjct: 1071 RSLDDLKCGQLVTGVLARVHPEHGYFIDLPGNMSALCPKSKVEWKCETDAGLANLIGATV 1130

Query: 813  RSNILDVNSETGRITLSLKQSCCS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
               ++ VN + G++ ++LK   C      T  + ++++  LEE+  +L     N S   W
Sbjct: 1131 VGRVMTVNPQAGKLIINLKLKKCLLNGLHTSIALLKQY--LEER-ELLSQRFRNPSNTDW 1187

Query: 869  ----VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG-FITHHQLAGATVES--GSVIQ 921
                +  + IG ++E  V    + G++ + E+   V G F++        VE   GS + 
Sbjct: 1188 KRRLLSKYQIGQLVECTVGMVVESGLICTVED--GVPGIFVSELLDPHWNVEYAVGSSLT 1245

Query: 922  AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV 981
              ++ V  +ER ++L+     +  FR+      A +++R + A  D     ++ A V + 
Sbjct: 1246 GLVVCVNYSERCLELAAMKQLLANFRQV-----ALRRRRHQPAVGD-----SLTATVLVA 1295

Query: 982  KENYLVLSLPEYNHSIGYASVS-DYNTQKFP--------------QKQFLNGQSVIATVM 1026
              + ++LS     H + Y S    YN    P              Q    +GQ ++++V 
Sbjct: 1296 NADCVLLSTA--GHGLCYMSARLHYNDFSLPRLKNPDKRQLRVRVQAYTTSGQCLVSSVR 1353

Query: 1027 ALPSSSTAGRLLLLLKAISETETSSSKRA----KKKSSYDVGSLVQAEITEIKPLELRLK 1082
                 S   R L    AIS   +  S  A    +K  +  VG L  A +  +    + L 
Sbjct: 1354 DEQLCSKIERRLR--SAISVQPSIESGTAPVIEEKGVAMAVGRLYSASVLSVDNRYVHLF 1411

Query: 1083 FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
                + GRI  TE++D             ++G TVT ++I  + +     S + E ++K 
Sbjct: 1412 IAGRYRGRIFATELDDQFLQDGSEPLKTVRLGTTVTVKVIG-TKRIRKGGSLMAECTMKS 1470

Query: 1143 SMLTVSE-----IGSKLLF---EECDVSIGQRVTGYVYKVDN-EWALLTISRHLKAQLFI 1193
            S L         IG K  F   EE +V + +R   +   V N  W+        +   + 
Sbjct: 1471 SKLFSKRNKKTIIGYKENFVIGEELNVLVVERKRHHFNVVVNPRWS-------GEVSFYT 1523

Query: 1194 LD--SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPF-----QDGIS-DK 1244
            +D  SA+   +L++             +VL ++ EK+ L+L  L+P      ++G +  K
Sbjct: 1524 VDPRSAWRNGQLRKV------------YVLDVDVEKRWLKLSALKPAMVELKENGYTFGK 1571

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             +   + ++ T +    + G R      GV  LV                 +IC      
Sbjct: 1572 LLSRDDKDLSTKLCFSMLGGAR------GVASLV-----------------DIC-----D 1603

Query: 1305 GYDEGQFDPLSGYDEGQFVKC----KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             YD          D+ + ++     K+  + +     +HV  SLR SL G +S+ +++ +
Sbjct: 1604 NYDH-------AVDKWRLLQVESYYKLFVVGKLENNFWHV--SLRPSLTGENSSEANN-A 1653

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVT--SKGCFIMLSRKLDAKV---LLSNLSDGY 1415
            T  D P   L    +L+   + +G+V  V    KG  ++L  +L   V   L+S  +D  
Sbjct: 1654 TIRDDPLYSLA--SELAVGNVYRGFVSKVRHYKKGLTVLLGHELFGNVPCGLISECTDAV 1711

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
                ++ FPIG +V  +V+S++  +  + +++ + D+    Q
Sbjct: 1712 --RLDQTFPIGTVVTVKVMSLDKSNGNLTLSMLSKDTGLPDQ 1751


>gi|156845672|ref|XP_001645726.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116393|gb|EDO17868.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1725

 Score =  156 bits (395), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 325/1422 (22%), Positives = 579/1422 (40%), Gaps = 209/1422 (14%)

Query: 54   FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
            FPRGG  +LT  E  ++  E   D  F          N+  KKK E  A     D     
Sbjct: 39   FPRGGASALTPLELKQVANEAANDVLF---------ANESSKKKAENSAETGTSDQRKSK 89

Query: 112  GDGISGKLPRY--------------ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
               ++ K                   + I  KN+  G +L G +  + ++D+ +     +
Sbjct: 90   KKKVTKKTDDDNEDSEEDIDVTSVIVSHINFKNLKVGSQLLGQIKYITKEDICVTFADNI 149

Query: 158  RG---LARAADALDPILDN------------------------EIEANEDNL-------L 183
             G   L   +D    IL+                         ++ +++  L       L
Sbjct: 150  SGYVPLTSISDQFTDILEQLDESMSDSSSDEEGEDEEEYESSDDVSSDKKPLAKKEVPNL 209

Query: 184  PTIFHVGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
               F +GQ + C V     L+   K+  K+KI LS+  S++   L+ E + +   +   V
Sbjct: 210  RNYFKIGQWLRCSVSANTALETQSKKNKKKKILLSIEPSVV-NILTEEDLNKSTTVQCSV 268

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
            KSIEDHG  L  G+   TGF+ + +       ++KPG +  G +        VV L+  P
Sbjct: 269  KSIEDHGAALDLGIEGITGFISKKDYLNFD--ELKPGFVFLGNIAKKSGRSVVVNLNFSP 326

Query: 301  DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
                  ++      SID ++PG  V    +S+   G+         G +   HL  TF  
Sbjct: 327  KNKVSQIS------SIDAVIPGQSVDLLCESVQPTGITGKVYGLVPGFISNVHLH-TFDR 379

Query: 361  TNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYL------LHNRAPPSHVKVGDIY 411
               K+ Y     V  RIL         + + ++  P++      LH          G  +
Sbjct: 380  EEIKHKYAIGSNVQGRILASLNNKNGDKVLIISTLPHITSLENKLHEIENLEAFPFGYTF 439

Query: 412  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471
            D + +   D    L L +    +    +  I +  E E             +  R+LG+ 
Sbjct: 440  DSASIKGRDSEY-LYLALDEDRIGEVHHSKIGNAFESE------------KISARVLGYN 486

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+K G ++ G ++++V S G  ++ F     A  P  
Sbjct: 487  SIDNVFQLSTDPETLKLKYVRAADIKIGELLTGCEIVSVSSKGIQLKIFNNQFSAFVPPI 546

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV---KSKLAILSSYAEAT- 584
            H+S+  +V P +KFK+G+++  RVL V  +  I VT KKTLV   +++  +L SY  A  
Sbjct: 547  HISDTRLVYPERKFKIGSKIKGRVLSVDFRGHILVTLKKTLVNAEENETPLLDSYKAAQT 606

Query: 585  ---DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC V F+ G+ GF P +E+       P     +GQ +  +++
Sbjct: 607  IKDSNSKTTATVQYFKPNGCVVSFFGGISGFLPNTEISEAFVKRPEEHLRLGQTILVKLL 666

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                   RI ++  +   +        + L+   S V   V   T +++VV +   G  +
Sbjct: 667  QVEKERSRIIVTCKVSNDKADSQKETIEKLIPGKSFVEASVIEKTKDSLVVEMEKTGL-R 725

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ-- 751
            G +   HL+D  +E        ++ G + + L V+D ++   +  ++ K SLI  A++  
Sbjct: 726  GVVYVGHLSDLRIEQNRAEIKKVRIGSKLNGL-VIDKDTRTYIFNMTLKESLIKDAKEGK 784

Query: 752  LPSDASHIHP---NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
            LP+  S +     ++ +HGYV ++ + G FV F G+  G    S AV+ +  D  K++Y+
Sbjct: 785  LPTSYSEVKTLDKSTPLHGYVKSVSDKGIFVAFNGKFVGLVLPSYAVENREIDFKKSFYM 844

Query: 809  GQSVRSNILDVNSETGRITLSL-----KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
             QSV + IL  + E  R  L+L     K+   +STD +           I  + SS    
Sbjct: 845  NQSVTAYILRTDDEQERFLLTLKEPKTKEKKKTSTDTA----------AINPIDSS---- 890

Query: 864  SELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGAT 913
              +K +  F +GS++EGK+   + N   ++++   H         D +  I   Q   + 
Sbjct: 891  --IKDLSDFRVGSIVEGKIKGVKKNQLNIILADNLHGRVDIAEVFDNFADIKDKQQPLSN 948

Query: 914  VESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
             +SG +I+  IL   DV         S K + I      NS  +   K  + ++SK    
Sbjct: 949  FKSGDLIKVKILGHHDVK--------SYKFLPISHSNLKNSVLELSIKPSELKSSK---- 996

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPS 1030
               + +I E+  ++ L   +  +     + +VS     K P  +  +  S  + +     
Sbjct: 997  -INIPSIDEVKIDSELTGFINNFAKDCVWLTVSPILKAKLPLFELSDDGSRFSAIEDSFP 1055

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGSLVQAEITEIKPLELRLKFGIGF 1087
              TA R+ +     +    + S R+K   S D   V  ++ A I ++    + L  G   
Sbjct: 1056 LGTALRVHVTSVDKTHNFVTVSNRSKSVKSIDDVNVDDILPARIIKVNDNYVLLDLGHKI 1115

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
             G   IT+  +D S+ + + + + K+ + V+A++I  S   + KK     LS++    + 
Sbjct: 1116 TGISFITDALNDFSSSLHDEYDD-KLNEMVSAKVI--SIDRETKK---INLSLQNEKASN 1169

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
             ++ S    ++ DV     V   +  V  +   + +S  L+A  F+  S    S L++++
Sbjct: 1170 MKLKSHEDLKQKDV-----VKAIIKNVTEKGIFVYLSSALEA--FVPVSKLSDSYLKDWK 1222

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + +   ++V G V+S +    +L L LR  +     K +   +D     I  GDI  G I
Sbjct: 1223 KFYKPMQSVIGKVISCDDNSHIL-LTLRESEVNGELKVLKGYSD-----IKVGDIFNGNI 1276

Query: 1268 SKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
              +     G+ V++    ++ G  H TE+ +  V + LS          S +  G  VK 
Sbjct: 1277 KNVTD--FGVFVKLDNTVNVSGLAHRTEIAD-TVPENLS----------SIFGVGDRVKA 1323

Query: 1326 KVLEISRTVRGTFHVELSLRSSL--DGMSSTNS-SDLSTDVD 1364
             VL   +T      + L L++S      S  NS SDL +D D
Sbjct: 1324 IVL---KTNPEKQQISLGLKASYFTSAKSKENSDSDLESDED 1362



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 196/752 (26%), Positives = 327/752 (43%), Gaps = 121/752 (16%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC V F G ++GF P ++  +       +   +GQ++   +L V  E  RI ++    C 
Sbjct: 625  GCVVSFFGGISGFLPNTEISEAFVKRPEEHLRLGQTILVKLLQVEKERSRIIVT----CK 680

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 893
             S D +  Q+     E I  L   K       +VE  +I    +  V E    G+  VV 
Sbjct: 681  VSNDKADSQK-----ETIEKLIPGKS------FVEASVIEKTKDSLVVEMEKTGLRGVVY 729

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
                SD+   I  ++     V  GS +   ++D      + +++LK   I   ++A   +
Sbjct: 730  VGHLSDLR--IEQNRAEIKKVRIGSKLNGLVIDKDTRTYIFNMTLKESLI---KDAKEGK 784

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSDY 1005
                    +   K   +H  V ++ +    V  N  ++ L LP Y   N  I +      
Sbjct: 785  LPTSYSEVKTLDKSTPLHGYVKSVSDKGIFVAFNGKFVGLVLPSYAVENREIDF------ 838

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------ETETSS----SKR 1054
                  +K F   QSV A +  L +     R LL LK           T+T++       
Sbjct: 839  ------KKSFYMNQSVTAYI--LRTDDEQERFLLTLKEPKTKEKKKTSTDTAAINPIDSS 890

Query: 1055 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFK 1112
             K  S + VGS+V+ +I  +K  +L +      HGR+ I EV D+ +++ +     SNFK
Sbjct: 891  IKDLSDFRVGSIVEGKIKGVKKNQLNIILADNLHGRVDIAEVFDNFADIKDKQQPLSNFK 950

Query: 1113 IGQTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
             G  +  +I+     KS K       ++K S L ELSIKPS L  S+I    + E   V 
Sbjct: 951  SGDLIKVKILGHHDVKSYKFLPISHSNLKNSVL-ELSIKPSELKSSKINIPSIDE---VK 1006

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            I   +TG++     +   LT+S  LKA+L + + + + S     +  F +G A+  HV S
Sbjct: 1007 IDSELTGFINNFAKDCVWLTVSPILKAKLPLFELSDDGSRFSAIEDSFPLGTALRVHVTS 1066

Query: 1223 INKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            ++K    + +  R      I D  VD             DI+  RI K+      +++ +
Sbjct: 1067 VDKTHNFVTVSNRSKSVKSIDDVNVD-------------DILPARIIKVNDNY--VLLDL 1111

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQFVKCKVLEISRTVRGTFH 1339
            G  + G + F       ++D L+ +     D    YD+   + V  KV+ I R  +    
Sbjct: 1112 GHKITG-ISF-------ITDALNDFSSSLHDE---YDDKLNEMVSAKVISIDRETK---K 1157

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + LSL++         +S++          L+  EDL    +V+  +KNVT KG F+ LS
Sbjct: 1158 INLSLQNE-------KASNM---------KLKSHEDLKQKDVVKAIIKNVTEKGIFVYLS 1201

Query: 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
              L+A V +S LSD Y++  +K +   + V G+V+S +  S  + +TL+ S+        
Sbjct: 1202 SALEAFVPVSKLSDSYLKDWKKFYKPMQSVIGKVISCDDNS-HILLTLRESEV-NGELKV 1259

Query: 1460 INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +   S++ VGDI  G IK V  +G+F+ ++NT
Sbjct: 1260 LKGYSDIKVGDIFNGNIKNVTDFGVFVKLDNT 1291


>gi|307177534|gb|EFN66645.1| Protein RRP5-like protein [Camponotus floridanus]
          Length = 1398

 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 153/618 (24%), Positives = 292/618 (47%), Gaps = 56/618 (9%)

Query: 128 LKNIS--AGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN-----EIEA 177
           L NI+   GM + G ++ V+E DL+I +PGG+ G   +   +++   +L N      I++
Sbjct: 56  LSNITLREGMTVLGRISRVSEYDLIISIPGGILGHVEITNLSESYTNLLQNIISTKAIQS 115

Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
           NE   LP +++ G  V C V  ++      GK    LSL   L+ + +    + +   + 
Sbjct: 116 NEFKPLPDLYNPGDYVICYVKNINPQ----GKWLYNLSLEPQLINQNVHNSYLVKNAKIV 171

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR--KVVY 295
             +KSIEDHGY++  G+ S   FL   ++ +    + K    L  ++  ++      V+ 
Sbjct: 172 CTIKSIEDHGYVVDTGIASVRAFLATKDVDK----EKKYCNQLLCIINEVETANYSSVIK 227

Query: 296 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
           LS+    ++     D+   S+D+L PG  +S  V  IL NG+ ++F     G ++  +L 
Sbjct: 228 LSAKRKKINNVSIHDIA--SLDVLAPGTKLSLCVAKILSNGLQVTFGKNNIGYINQIYLD 285

Query: 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK 415
           N          Y ++ +V   +L++ PT +    +L    L +++    +  GDI  ++K
Sbjct: 286 NPLSM------YIENMEVTGTLLYILPTVKLAYFSL----LTDKSEKEKLSKGDIIKKAK 335

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           V+  +   G++L+I  + +     +  ++V+ +   K+  ++K+GS  + RIL +  +E 
Sbjct: 336 VLYKESN-GIILNISESGLRGFVSLVKTNVSFD---KIPTEFKQGSTHKCRILAYNWMEH 391

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSE 533
           L    ++    +   F+ SD+  G ++   + ++D     +    G  +  + P+ H+S+
Sbjct: 392 LYVCTMEDEILKQKYFSSSDLNCGDIITVTITSIDKGSGYMHVQAGNILGFVSPM-HVSD 450

Query: 534 FEIVKPGKKFKVGAELVFRVLGVKSKR-----ITVTHKKTLVKSKLAILSSYAEATDRLI 588
             +     K K+G  +  RVL +K+       +  T K++L+KSKL +L    +A   L 
Sbjct: 451 SGL-SALNKMKIGDSIEARVLDLKTSNDNNVNVIFTLKQSLIKSKLPVLHDIHKAQCGLE 509

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            HG ITKI+K+G  VRFY  ++G+  RS L        +  Y +GQ +   I S      
Sbjct: 510 YHGTITKIDKNGLLVRFYGNIRGWVSRSTLN-SKTHNMNWNYSIGQTITVCIES--IEKY 566

Query: 649 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGT----IPTEH 703
            I L  + +  +   ++   +G ++ G   V+  +   VY+ I +G  +      +P  H
Sbjct: 567 EIKLKIVTEKQKQQTENF-SIGEMIEGT--VIESSIKGVYLRIHRGNDENVTTAFLPAGH 623

Query: 704 LADHLEHATVMKSVIKPG 721
           +A  +E  +++ S   PG
Sbjct: 624 IAPCIEIGSLLASKYNPG 641



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 30/220 (13%)

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
           ++ + N++ + K SLI S   +  D          HG +  I + G  VRF G + G+  
Sbjct: 476 NDNNVNVIFTLKQSLIKSKLPVLHDIHKAQCGLEYHGTITKIDKNGLLVRFYGNIRGWVS 535

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
           RS  ++ +  +++  Y +GQ++                     C  S +   ++   + E
Sbjct: 536 RS-TLNSKTHNMNWNYSIGQTI-------------------TVCIESIEKYEIKLKIVTE 575

Query: 851 EKIAMLQSSKHNGSELKWVEGFIIGSVIEG---KVHESNDFGVVVSFEEHSDVYGFITHH 907
           ++    +    N S  + +EG +I S I+G   ++H  ND  V  +F     +   I   
Sbjct: 576 KQ----KQQTENFSIGEMIEGTVIESSIKGVYLRIHRGNDENVTTAFLPAGHIAPCIEIG 631

Query: 908 QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            L  +    G VI A +     +   + LS   V  +R+R
Sbjct: 632 SLLASKYNPGDVISALVFATKPS---IILSRTFVTQERYR 668


>gi|321477952|gb|EFX88910.1| hypothetical protein DAPPUDRAFT_220970 [Daphnia pulex]
          Length = 1487

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 191/851 (22%), Positives = 355/851 (41%), Gaps = 69/851 (8%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI--------LDNEIEA 177
            T K ++ GM++   V EV E D+++ LPG ++ +    +   P          D ++EA
Sbjct: 87  FTFKMLAEGMQVLSRVQEVRELDVLLSLPGRIQAVVPITNISAPYSKLIDMLAQDEDVEA 146

Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
                L  I   G L  C + ++ +D    G  K+  SL    +   +    + +GM +T
Sbjct: 147 KG---LKEILTAGDLFPCSIKEVTND----GSFKVTASLNPVDVNSDIPSTALCKGMKMT 199

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 297
           A V+S+EDHGY++  G+ +   FL +        +D+  G ++   V        V  L+
Sbjct: 200 AAVQSVEDHGYVMDVGILNVRSFLTKV-----PDLDLAVGQIVSVCVTGCQIDGHVATLT 254

Query: 298 SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
               TV     K    +++  L+P   +   V  +L  G+ ++F     G +   HL N 
Sbjct: 255 LS--TVESVKFKQNVELNLSTLIPATKLHVTVNKVLPQGLTVTF-GNMVGYIHKDHLVNI 311

Query: 358 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH---NRAPPSHVKVGDIYDQS 414
             + +    Y +     A +L+  P   AV L+L   L+    N      + +G  ++ +
Sbjct: 312 NDSVSA---YEKSANYTAIVLYTLPLVNAVYLSLKSSLVKPDLNVNEKDTIALGQFFEAT 368

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
                  GL + L+  +       +++ +    E+ R L   +   S  R R+L    L+
Sbjct: 369 ITESTSAGLFVQLNKKAKGFVPLRHLSDNQDIFEDTRAL---FPVKSRKRCRVLYHASLD 425

Query: 475 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE- 533
            +    +K S        + D   G +++GK+ +V   G  V     +K   P  H ++ 
Sbjct: 426 DIYICTMKKSLITQKALRYEDFIVGEILEGKIDSVSPAGVSVHLGVNLKGFIPKLHWADD 485

Query: 534 FEIVKPGKKFKVGAELVFRVLGVKSKRITV--THKKTLVKSKLAILSSYAEATDRLITHG 591
             + KP  +F+VG  +  RVL V   R T+  T KK+++  K+   S  ++    L   G
Sbjct: 486 PRLKKPELRFRVGEPITCRVLKVMIDRKTIHLTCKKSMLDEKVVAYSCTSQLETNLALKG 545

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +  IEK G  V F++G+ G+ P + L  +   +    +++G+V+ C++  SI  S ++ 
Sbjct: 546 TVALIEKGGVLVSFFDGLTGYIPGNRLLKNGITDIHHYFYMGKVIDCKV-ESINESGKVI 604

Query: 652 LSF----MMKPTRVSEDDLVKLGSLVSG----VVDVVTPNAVVVYV-IAKGYSKGTIPTE 702
           L+     + KP  + E  ++ LG++V      V D V  N+  + V I    + G IP E
Sbjct: 605 LTLAGSGLTKPKSLPEKPILNLGTIVECKVERVYDAVEGNSSGLEVSIPSLETTGIIPVE 664

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN--SAQQLPSDASHIH 760
           HL+D  + A+ +    +PG    + +V  +     +L+ K +++N       P     + 
Sbjct: 665 HLSDFPKAASHLLDCYRPGQVIKEAVVYMSSKLQTVLTLKPNIMNFIKGNGYPKSVDDVA 724

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-------VGQSVR 813
             S +          G F + L       P    V      +S   Y       +  ++ 
Sbjct: 725 MGSTLPCVATLHRPFGVFAQLLC-----PPNKFDVLFPPGKMSPNLYSYMENGTMHMTLE 779

Query: 814 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM-LQSSKHNGSELKWVEGF 872
             ++ +  E  +I LS   +C     A  ++ +  +EEKI + L+ S   G  LK +   
Sbjct: 780 GEVIRIEKEEKKIFLSALNACVPENAARVLEAYLKVEEKIKVHLRESSDEG--LKNLASL 837

Query: 873 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
            +G V+ GK+    D    + FE    + G +  +  A    +   +I  +++       
Sbjct: 838 KLGDVVVGKLLTEFDSSADLEFELPHGINGIVPAYHHAKKDFKKNDLIVGSVM------- 890

Query: 933 LVDLSLKTVFI 943
            VD  +K V++
Sbjct: 891 YVDPIMKKVYV 901


>gi|226291917|gb|EEH47345.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb18]
          Length = 1780

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 209/888 (23%), Positives = 362/888 (40%), Gaps = 100/888 (11%)

Query: 9   QKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERD 68
           Q+K +K G       K+Q +NS+   +   +A  +++  +++ P+FPRGGG+ LT  E+ 
Sbjct: 30  QRKGAKGG------KKSQAENSRDSSDLPSKAPAVSVLREEE-PMFPRGGGNILTPLEQK 82

Query: 69  EIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISG----------- 117
           +I  +   +    + G   +      + +R   ++    G       S            
Sbjct: 83  QIQIQATRDVLFEQNGAAGQQDDNMDEADRGHKKSGKSSGVKVKKVKSKAKKQAASEDPT 142

Query: 118 KLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNE 174
           K       +  K I  G K+ G V+ +N  D+ + LP  L G   L   +      ++  
Sbjct: 143 KQAVRIEGLNFKRIVIGSKVLGQVSSINAHDIGLSLPNNLTGYVPLTSISRTFQQKIEKL 202

Query: 175 IEANEDN---------------LLPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSL 216
           + +NED                 L + F +GQ +   V   + + K     GK+ I LS+
Sbjct: 203 LNSNEDENEGSDDGDSDDEEDLDLKSYFELGQYLRASVTATESETKNPQTKGKKHIQLSV 262

Query: 217 RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGI-D 273
                  GLS   +     + A V S+EDHG ++  GL      GF+    +  +  +  
Sbjct: 263 DPRDANSGLSKSDMVVNTTVQASVVSVEDHGLVMDLGLDDGQTKGFMSSKEIPPDLEVSQ 322

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQS 331
           +K G +   VV   +    VV LS++ P   S   +  L    +I+  +PG      +  
Sbjct: 323 IKEGSVFLCVVTGHNANGSVVKLSANLPAAGSIKKSHYLTSAPTINSFLPGTAAEILLNE 382

Query: 332 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-- 389
           +   G+    +      VD+    +T  T N    Y+   K+  R++   PT     L  
Sbjct: 383 VTSTGMAGKIMGMLDAVVDLVQSGSTTGTENLTTKYHVGAKIKGRLICTFPTVEPSKLGF 442

Query: 390 -------TLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 441
                    +P +L   +    +  V  I  ++KV +V+ GLG+ +   +          
Sbjct: 443 SILEHVVKFSPTVLEQYSTSEDIPAVSAIVPEAKVTKVEPGLGVYVQFNNKHYGFVHISR 502

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           +SD   + +   +  YK  S    RI+GF  L+ L     +    +       DV  G V
Sbjct: 503 LSDDKVDSISATQGPYKVDSTHEARIVGFSALDNLYLLSFERKVIDQPFLRLEDVTVGAV 562

Query: 502 VKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           VKGK+       D   G IV    G+  L P  H+S+ ++  P +KF+ G ++  R+L V
Sbjct: 563 VKGKIEKLLTGPDGIDGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSV 622

Query: 557 --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
             + +++ +T KK+L+ S+      Y++      + G I  I  HG  V+FY  V+    
Sbjct: 623 NLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQSPGTIISIHPHGAIVQFYGEVR---- 678

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
                     E   +     VV C+  S+   + + N    ++P           G LVS
Sbjct: 679 ----------EVRKL-----VVSCKDPSTSTETYK-NAFENIQP-----------GDLVS 711

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDN 732
             V   +   +++ +   G     +  EH+ D    +H + + + I+ G +   L++L  
Sbjct: 712 CTVFEKSKEVILLRLEGSGLV-ARLNAEHVTDGQSSKHGSAL-ACIRVGQKLHDLVILSM 769

Query: 733 ESSNLLL--SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           +  + L+  S K SL  + Q  +LP+        S V G+V NII  G FV FL  LTGF
Sbjct: 770 QKVHRLIKVSNKPSLKQARQRGELPAKFEDFQEGSKVTGFVKNIIADGLFVEFLRGLTGF 829

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            P+    D   A     Y + Q++ S +  +  +  R TLS+K++  S
Sbjct: 830 LPKRLMDDDHVAKPDFGYTLSQTISSFVHSIEDDRQRFTLSMKENQTS 877



 Score =  117 bits (293), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 209/439 (47%), Gaps = 49/439 (11%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARI 1121
            G + +A+I  +K  ++ ++      GRI ++E+ D  D     +     FK  Q +  RI
Sbjct: 912  GRITKAKIVSVKETQINVQLADNIQGRIDVSEIFDGWDAIKDRKQPLRYFKPKQIIPVRI 971

Query: 1122 I----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            I    A+S+K  P   +S    ++ELS KPS L   +I    L     V IG    G+V 
Sbjct: 972  IGIHDARSHKFLPISHRSGKYPVFELSAKPSSLESKDIE---LLSLDKVEIGSSWLGFVN 1028

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             + ++   + I+ +++ +L I D + + S + +  + F +G A+  HV  +N +K  L L
Sbjct: 1029 NIGDDCLWINITPNVRGRLRITDVSDDLSLVGDVTKNFPVGSAIKVHVTGVNVDKNRLDL 1088

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
                     S K  D  N    +   +G+I+ GR++K+      ++VQ+     G ++  
Sbjct: 1089 ---------SAKHGDPLNKRTISDFSKGEILLGRVTKVSDR--QVLVQLSDTTVGAINLI 1137

Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1352
            ++                 D  +      F K +VL +         V++  +  L  +S
Sbjct: 1138 DMA----------------DDYTKVIPANFHKNEVLRVC-----ILDVDVPNKKIL--LS 1174

Query: 1353 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1412
               S  LS+ +      ++ I  L  N IV+G+V+ V + G F+ L  ++ A V +S+LS
Sbjct: 1175 VRPSRVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLS 1234

Query: 1413 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1472
            D Y++  + EF + +LV GR++ V+  + +++++LK S      ++ I  + +L+ G IV
Sbjct: 1235 DSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPI-TIRDLNRGQIV 1293

Query: 1473 IGQIKRVESYGLFITIENT 1491
             G+++ VE +G FI I+ T
Sbjct: 1294 TGKVRSVEEFGAFIVIDGT 1312



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 188/467 (40%), Gaps = 93/467 (19%)

Query: 1068 QAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1126
            +A++T+++P L + ++F    +G +HI+ ++DDK + +      +K+  T  ARI+  S 
Sbjct: 474  EAKVTKVEPGLGVYVQFNNKHYGFVHISRLSDDKVDSISATQGPYKVDSTHEARIVGFSA 533

Query: 1127 KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1186
              +     L+ LS +  ++       +      DV++G  V G + K      LLT    
Sbjct: 534  LDN-----LYLLSFERKVI------DQPFLRLEDVTVGAVVKGKIEK------LLTGPDG 576

Query: 1187 LKAQLFILD---SAYEP------SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            +   +  L    S   P      ++LQ  +R+F  G  V+  +LS+N EK+ LRL L+  
Sbjct: 577  IDGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKK- 635

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-----LYGRVHFT 1292
                      + N     +    DI+ G  S       G ++ I PH      YG V   
Sbjct: 636  ---------SLLNSESPAWKEYSDILPGNQSP------GTIISIHPHGAIVQFYGEVR-- 678

Query: 1293 ELKNICVS--DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV-----RGTFHV-ELSL 1344
            E++ + VS  DP S   E   +       G  V C V E S+ V      G+  V  L+ 
Sbjct: 679  EVRKLVVSCKDP-STSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNA 737

Query: 1345 RSSLDGMSSTNSSDLST-------------------------------DVDTPGKHLEKI 1373
                DG SS + S L+                                     G+   K 
Sbjct: 738  EHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKF 797

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
            ED      V G+VKN+ + G F+   R L   +    + D +V  P+  + + + ++  V
Sbjct: 798  EDFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFV 857

Query: 1434 LSVEPLSKRVEVTLK---TSDSRTASQSEINNLSNLHVGDIVIGQIK 1477
             S+E   +R  +++K   TS  R +  +   + +N    + V G IK
Sbjct: 858  HSIEDDRQRFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIK 904



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 41/252 (16%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 780
            +L +D  +  +LLS + S + S+  LP         S +  N +V G+V  +   G FV 
Sbjct: 1161 ILDVDVPNKKILLSVRPSRVLSSS-LPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVT 1219

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
                +T +   S   D    D    + V Q V   I+ V++E  ++ +SLK+S       
Sbjct: 1220 LGHEVTAYVRISDLSDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESV------ 1273

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
              ++ ++     I  L                  G ++ GKV    +FG  +  +  +++
Sbjct: 1274 --LEPNYKAPITIRDLNR----------------GQIVTGKVRSVEEFGAFIVIDGTANL 1315

Query: 901  YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
             G     ++A   VE        G +++A IL +   +  + L LK  +   F+E++   
Sbjct: 1316 SGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKERISLGLKASY---FKESDDKS 1372

Query: 954  QAQKKKRKREAS 965
              +  +   E S
Sbjct: 1373 DGENSEDGNEQS 1384



 Score = 47.0 bits (110), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 157/374 (41%), Gaps = 31/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            ++L  +  G    G V  + +  L I +   +RG  R  D  D + L  ++  N      
Sbjct: 1012 LSLDKVEIGSSWLGFVNNIGDDCLWINITPNVRGRLRITDVSDDLSLVGDVTKN------ 1065

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F VG  +   V  ++ DK      ++ LS +        ++    +G +L   V  + 
Sbjct: 1066 --FPVGSAIKVHVTGVNVDKN-----RLDLSAKHGDPLNKRTISDFSKGEILLGRVTKVS 1118

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR----SIDRTRKVVYLSSDP 300
            D   ++     +  G +   ++A++    +        V+R     +D   K + LS  P
Sbjct: 1119 DRQVLVQLS-DTTVGAINLIDMADDYTKVIPANFHKNEVLRVCILDVDVPNKKILLSVRP 1177

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   V+ +  NG+ ++     T  V I  L +++
Sbjct: 1178 SRVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDSY 1237

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPSHVKVGDIYDQSKV 416
               +W++++   + V+ RI+FVD  +  + ++L   +L  + +AP   + + D+     V
Sbjct: 1238 -LKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAP---ITIRDLNRGQIV 1293

Query: 417  ---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
               VR     G  + I  T  +       +++AE++V    K +++G  V+ +IL   H 
Sbjct: 1294 TGKVRSVEEFGAFIVIDGT-ANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHD 1352

Query: 474  EGLATGILKASAFE 487
            +   +  LKAS F+
Sbjct: 1353 KERISLGLKASYFK 1366



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 111/288 (38%), Gaps = 68/288 (23%)

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFT-HSDVKPGMV 501
           +++ +++  E+K++EG+ V  RIL     +      LK S    E   +  +SD+ PG  
Sbjct: 597 LSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQ 656

Query: 502 VKGKVIAVDSFGAIVQFPGGVKAL------CPLPHMS------EFEIVKPG--------- 540
             G +I++   GAIVQF G V+ +      C  P  S       FE ++PG         
Sbjct: 657 SPGTIISIHPHGAIVQFYGEVREVRKLVVSCKDPSTSTETYKNAFENIQPGDLVSCTVFE 716

Query: 541 ---------------------------KKFKVGAELVFRVLGVK------------SKRI 561
                                      +  K G+ L    +G K             + I
Sbjct: 717 KSKEVILLRLEGSGLVARLNAEHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLI 776

Query: 562 TVTHKKTL--VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            V++K +L   + +  + + + +  +     G++  I   G FV F  G+ GF P+  + 
Sbjct: 777 KVSNKPSLKQARQRGELPAKFEDFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMD 836

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT---RVSED 664
            D   +P   Y + Q +   + S     +R  LS     T   RVS++
Sbjct: 837 DDHVAKPDFGYTLSQTISSFVHSIEDDRQRFTLSMKENQTSKQRVSDN 884



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 141/330 (42%), Gaps = 53/330 (16%)

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
            S +  G ++   +T++   ++ ++      G I++ ++ DD + V+    +NF   + + 
Sbjct: 1102 SDFSKGEILLGRVTKVSDRQVLVQLSDTTVGAINLIDMADDYTKVIP---ANFHKNEVLR 1158

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV-SIGQR-----VTGYVY 1172
              I+   + P+ K      LS++PS +    + S L  E+ ++ SI Q      V G+V 
Sbjct: 1159 VCIL-DVDVPNKK----ILLSVRPSRV----LSSSLPIEDPEIKSISQLKVNDIVRGFVR 1209

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            +V N    +T+   + A + I D     S L+++Q  F + + V G ++ ++ E   L++
Sbjct: 1210 RVANNGLFVTLGHEVTAYVRISD--LSDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQM 1267

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
             L+        ++V   N      I +   G IV G++  +      +V+    +L G  
Sbjct: 1268 SLK--------ESVLEPNYKAPITIRDLNRGQIVTGKVRSVEEFGAFIVIDGTANLSGLC 1319

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL- 1348
            H TE+    V            D    +++G  VK K+L+I         + L L++S  
Sbjct: 1320 HRTEMAEQKVE-----------DARKLFEKGDIVKAKILKIDHDKE---RISLGLKASYF 1365

Query: 1349 -------DGMSSTNSSDLSTDVDTPGKHLE 1371
                   DG +S + ++ S      G  LE
Sbjct: 1366 KESDDKSDGENSEDGNEQSVSESEDGGELE 1395


>gi|345490135|ref|XP_001599465.2| PREDICTED: protein RRP5 homolog [Nasonia vitripennis]
          Length = 1396

 Score =  154 bits (389), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 221/922 (23%), Positives = 381/922 (41%), Gaps = 121/922 (13%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD----DLGS 109
           FPRGG   + +   +                  K+ K K KK   K N+T +    D G 
Sbjct: 6   FPRGGKKPVIKPSNNL---------------FSKRTKIKAKKPRSKPNKTKEVASTDDGP 50

Query: 110 LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---- 165
           L  +         A  + L ++  GM + G +  V +    + LPG +    +A D    
Sbjct: 51  LVANT--------AQNLRLSSLHEGMVIVGRIFRVTDYHAFVSLPGQISAKLQATDISDS 102

Query: 166 ---ALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLY 222
              +L  I  NE  + E   +  ++  G  V C V   + + K     K+ +SL   L+ 
Sbjct: 103 YTNSLKSIAKNEEISEEFKPMSDLYKEGDYVVCYVKSFNPNTK-----KVSVSLEPQLIN 157

Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA-ENSGIDVKPGLLLQ 281
           + L+  T+ +   +   + S+EDHGY+L  GL +F  FL   ++A E + + V  G  + 
Sbjct: 158 QSLNPGTLVKRSKVVLSISSVEDHGYVLETGLKNFRAFLSIKDIADEETKLFV--GKQII 215

Query: 282 GVVRSIDR-----TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
             V+ +       T KV   +   DTV   +T      S+D L+P    +  V+ +L+NG
Sbjct: 216 CAVKDVKTAENIYTAKVSIKTKHLDTVETNIT------SLDSLIPTAQFALTVKKVLKNG 269

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
           + + F     G ++  +LQN+       + + + +++   +L++ PT +    +L P   
Sbjct: 270 LQVEFGENSIGYINQLYLQNSL------DSFKKGQELVGTLLYIVPTVKFGYFSLLP--- 320

Query: 397 HNRAPPSHVKVGDIYDQSKVVRVD-RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
              A    + +GD+  ++K V  D RG+ L L           YV +    E +  K++ 
Sbjct: 321 -QEAEQKLLAIGDVITKAKFVSKDSRGIILQLK-----KGIQGYVPLKR-TEVQFEKIDS 373

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
            + + S  + +IL +  +  +    ++    E  V   + ++PG VV+ K+  +   G I
Sbjct: 374 VFTKNSIHKCKILAYDSIARVYICSMEKKVIEKTVVNKTILQPGHVVEVKITKIKKNGYI 433

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVKSKRITVTHKKTLVKSK 573
               G      P   +S+     PG K  FKVG  +  RVL    K I  T KK+L++SK
Sbjct: 434 SVSSGTRNGFVPADQVSD-----PGYKATFKVGQNVTARVLETSVKNI-FTLKKSLIESK 487

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
           L IL    +A    +  G +++I   G  +RF++GV+GF P+  L  +      +M  VG
Sbjct: 488 LPILCKMEDAKADAVHDGTVSRITDAGILIRFFDGVKGFIPKKFLNNNTASAKWNMV-VG 546

Query: 634 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
           Q V   I        ++ LS +      +++   K+G +V G+V   +   V + +  K 
Sbjct: 547 QTVSTVIKDVDVRETKLILSLVKGAK--AQNTKFKIGDVVEGIVTDSSAEGVQLRL--KN 602

Query: 694 YSKGTIPTEHL-ADHLEHATVMKSVIKPGYEFDQLL----VLDNESSNLLLSAKYSLINS 748
           Y +   PT +L A H+           P YE  +LL    V     + ++ S   +LI S
Sbjct: 603 YGEEA-PTAYLPAGHMS----------PCYEVGKLLASKTVAGESVTAIVFSTMPTLILS 651

Query: 749 AQQLPSDASHIH---PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK--AVDGQRADLS 803
               P     IH   P   V   V  I +    V     L      SK   V    A   
Sbjct: 652 TTFAPEKTYKIHDLKPEDTVMCSVKKIHKESVKV-----LMPLVKSSKFGTVPAASAGNI 706

Query: 804 KTYYVGQSVRSNILDVNSETGRITLSLKQS----CCSSTDASFMQEHFLLE---EKIAML 856
           ++ Y  Q +   +  +  ++  I+L+ + S      S  D   M    +L     K+  L
Sbjct: 707 ESMYENQILIGKVTRIEKDSQEISLTTQLSKVWKSVSEHDVKMMTAVDVLSSYLNKVTEL 766

Query: 857 QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
             + +  S  K +    IG  I+G V    D G+++  E  ++V G +      G  V  
Sbjct: 767 SRNVYYTS--KPISKLSIGQRIKGSVESVMDHGLILKLE--NNVKGIVRTSHFTGNVV-P 821

Query: 917 GSVIQAAILDVAKAERLVDLSL 938
           G  ++ ++L +      V+L+L
Sbjct: 822 GQKVEGSVLWINYPHEYVELTL 843


>gi|257206022|emb|CAX82662.1| putative DnaJ (Hsp40) homolog, subfamily C, member 2 [Schistosoma
           japonicum]
          Length = 1870

 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 187/793 (23%), Positives = 339/793 (42%), Gaps = 124/793 (15%)

Query: 139 GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-----DNL--LPTIFHVGQ 191
           GVV  +++  L I LP G  G     D  D   +   E+ E     D+L  L  +F VGQ
Sbjct: 9   GVVKSIHKLYLEIQLPHGFLGRVNIYDISDKYTELLRESAETGVIHDDLVELSEMFKVGQ 68

Query: 192 LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
           +V C + + D+ +     ++  +SL   ++ K +  + ++  MV    + S EDHGYI+ 
Sbjct: 69  IVRCFIKESDNSRGGGSNKRYLVSLNPKMVNKSVISKNLKPYMVFVGSIVSNEDHGYIVD 128

Query: 252 FGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT--- 308
            G+P  + FLP++ + +N  I    G L+       D +    ++SS  D VSK  T   
Sbjct: 129 SGVPRMSCFLPKDQVDDNPNI----GSLIAFTPYVSDPSN---FVSSTSDRVSKVTTRLD 181

Query: 309 ------KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 362
                 K    ++ D ++PG  ++  +   + + ++  F  YF           + P ++
Sbjct: 182 PTLSVLKSNSRVNFDCILPGTCLNASIVKKVTSVLVAEFSDYFI----------SVPRSH 231

Query: 363 W---KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---------VGDI 410
           +   K DY     V   I+FVDP+++ +  +L P+L++    PS +K         VG  
Sbjct: 232 YDGCKEDYQIGANVVVCIIFVDPSAKQLTGSLLPHLVN--PIPSILKISELLFRCPVGTR 289

Query: 411 YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRIL 468
           +  S V RV++   +L+ +P T  S      +  + + E +  E  K    GS +  RI+
Sbjct: 290 FSGSLVERVNKR-AVLVKLPKTNGSK----AVIRIHKTETKNNENFKSLAVGSKLTCRII 344

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
           G   LE +A   +          + +++KPG  V   V      G +V   G +  L P 
Sbjct: 345 GHDFLENVAVATINKKLLTVPFLSLNELKPGYKVLATVKRYSKTGIVVHIEGRLHGLIPY 404

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSS---YAE- 582
            H ++  + +  +KFK G ++   VL +   + ++ +T K  LV S+  +  S   Y   
Sbjct: 405 LHTTDINLKEYKEKFKAGEKVSCIVLQLDECANKLILTAKPGLVNSEFPVFGSREMYTAL 464

Query: 583 ---ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 639
               TDRL+  G++ K+ + G  +   + V+G+ P+ E GL       + ++ GQV+K +
Sbjct: 465 EKGNTDRLLVIGFVVKVSEKGLLISGLDNVRGWIPKRETGLADEDILQTNFYRGQVLKMK 524

Query: 640 IM---------------SSIPASRRINLSFMMKPTRVSED---DLVKLGSLVSGVVDVVT 681
                             SI +    +L F  K  + S+    D V +G   S  V+ V 
Sbjct: 525 FKREINISPTNQMEGDNQSIRSKYMFSLKFHSKKVKSSQSIFLDSVHIGQRFSATVNRVE 584

Query: 682 PNAVVVYVIAKGYSKGTIPT---------EHLADHLEHATVMKSV---IKPGYEFD---- 725
              + V + A   S  T+ +           L+D+  +  ++      +K G   D    
Sbjct: 585 DTGISVNLYATKDSNNTMTSVLGTGFLSFSQLSDYESNQQLLCRYTKNMKSGSTLDWNNS 644

Query: 726 --QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIET-- 775
             +++V+D     +++SA+ +LI +A     DAS+      +  ++ + G++    E   
Sbjct: 645 AREVVVIDKGKQTVIVSARPTLIWAAGNPKIDASNDVNMVDLQTSTTMPGFLRTFDELQI 704

Query: 776 --------------GCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILD 818
                         G FVRF   + G AP+    D +     + ++ + VG +V + I++
Sbjct: 705 GGQWFAWVSHHKDYGVFVRFPAGIYGLAPKHLLSDFRAPSNTNWAELFPVGATVIAKIVE 764

Query: 819 VNSETGRITLSLK 831
           V  E      SL+
Sbjct: 765 VTPEKRHCLASLR 777


>gi|321258889|ref|XP_003194165.1| rRNA processing-related protein [Cryptococcus gattii WM276]
 gi|317460636|gb|ADV22378.1| rRNA processing-related protein, putative [Cryptococcus gattii
           WM276]
          Length = 1486

 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 193/782 (24%), Positives = 349/782 (44%), Gaps = 82/782 (10%)

Query: 20  NKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQ------RERDEIHAE 73
           +KA+KN  K S         A    L  D+    FPRGGG +LT       RE     AE
Sbjct: 12  DKATKNTQKESLSGAPRPAPAFTSTLQSDETN--FPRGGGSTLTAFEFKQVREEGRREAE 69

Query: 74  VDAEFEAVERGLHKKNKKKKKKTER-KANETVDDLGSLFGDGISGKLPRYANKITLKNIS 132
            DA+ +A  +G  +K +   ++ +R K NE          D I  ++  Y      K + 
Sbjct: 70  NDAKLQA-SKGEKRKRQMSDRQAKRLKKNEDAKKKEERDKDNIRVEILNY------KRLV 122

Query: 133 AGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNE--------IEANEDN 181
            G  +   V  V    L++ LP  L     +   ++ L  +L  E         E+++++
Sbjct: 123 PGTHVLARVHTVLPLHLILSLPNNLLAHVPITEVSNTLTKLLTAEEAMVVDEDEESDDES 182

Query: 182 LLP---TIFHVGQLVSCIVLQLDDDKKE--IGKRKIWLSLRL------SLLYKGLSLETV 230
            +P    +F  GQ V   VL L     +  I +  +  + RL      +L+ + ++ E  
Sbjct: 183 TVPDLAQLFVPGQYVPAKVLTLYPTASQSFISQYPVTETTRLASRVELTLVPEKVNSEVA 242

Query: 231 QE----GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLL 280
           ++    G  L   V+S ED G+I+  GL      S  GF+ ++ +A+      + PG LL
Sbjct: 243 KKDLETGYFLVGEVRSEEDKGWIIGVGLNTENGSSVEGFVSKDEVAKFVPAQALIPGQLL 302

Query: 281 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
              + SI    +VV+LS +   +++    ++   ++  +VPG  V+  + +++ +G+ + 
Sbjct: 303 PATISSIAAGGRVVHLSLNQQDIARSQISEVS--TVGSIVPGHSVNALITAVVPSGLNVK 360

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLL 396
              +F GT+D+ HL       + ++ Y   KK+ AR+++     +P S A  L+  P++L
Sbjct: 361 VAGFFDGTIDLAHL--PLGDDDIEDKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVL 416

Query: 397 HNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           +  +P            + +G +Y  +KV RV    G+++    T      +V IS +A+
Sbjct: 417 NLTSPTQEGDDTPLELAIPIGKVYQSAKVTRVLNDWGVMV---RTQDGLEGFVHISHLAD 473

Query: 448 EEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           E +  L     ++K G+  R R++G   ++G+     + S    L    S++K G  ++G
Sbjct: 474 ERIPVLSNATPQFKVGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVSELKIGQQLRG 533

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRIT 562
            +  +      V   G V  +    H ++  +  P K+FK  A +  RVL ++    R+ 
Sbjct: 534 TIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEASVKARVLYLEPARNRVV 593

Query: 563 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
           +T KKT ++S LA+  S+ +     +T G + KI   G  V  + G++ F P SE     
Sbjct: 594 LTLKKTFLESDLAVPQSFEDLKVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTH 653

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVV 680
             + S  ++VG+ +  R+++  P++ RI +S              KL  G  VSG V  V
Sbjct: 654 IKDLSEAFYVGKPLTVRVITLDPSTSRIVVSVKQAAPTAPATAAEKLEVGEAVSGTVSQV 713

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNL 737
               VVV +   G     +   +L++   H  +  ++  +K G + D L+V+  N  S L
Sbjct: 714 HTEQVVVKLEGSGLI-ALLSLSNLSNQ-RHTGIEELRRSLKQGEKIDDLVVVSKNPVSGL 771

Query: 738 LL 739
           ++
Sbjct: 772 II 773



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 127/238 (53%), Gaps = 27/238 (11%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  G IV G + +      G ++Q+  +L GRVH  +  +  V     G       PLS 
Sbjct: 807  IEVGQIVTGTVQE--QTPQGYMIQLPNNLRGRVHPCDSSDDLVVAAGRG-------PLS- 856

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               G+ V C VL ++++ R    ++LS R S ++G             D   + +  ++D
Sbjct: 857  --IGEEVTCYVLAVNKSKRA---IDLSTRLSRVEGKE-----------DVVDREINTVDD 900

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L     V+G VKN+   G F+ L R + A++++  L D YV+  E  F I +LV+G++LS
Sbjct: 901  LKQGETVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWESRFEINQLVSGKILS 960

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            + P S  +E+TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+
Sbjct: 961  INPKSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNV 1018



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 600 GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           G  VR  +G++GF   S L    +      +  + VG + + R++   P    + LSF  
Sbjct: 453 GVMVRTQDGLEGFVHISHLADERIPVLSNATPQFKVGTLHRARVIGHSPMDGVLLLSFEQ 512

Query: 657 KP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 710
                   +VSE   +K+G  + G +  +T    +++V   G   G +   H AD  L+H
Sbjct: 513 SVLSQLFMQVSE---LKIGQQLRGTIRRLTDK--MLFVNVHGNVDGIVHPTHYADIRLKH 567

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
               +   KP      ++L L+   + ++L+ K + + S   +P     +    V  G V
Sbjct: 568 P---QKRFKPEASVKARVLYLEPARNRVVLTLKKTFLESDLAVPQSFEDLKVGEVTLGSV 624

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             I++ G  V     L  F P S+       DLS+ +YVG+ +   ++ ++  T RI +S
Sbjct: 625 LKIVDKGVIVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITLDPSTSRIVVS 684

Query: 830 LKQ 832
           +KQ
Sbjct: 685 VKQ 687



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 285  RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 344
            R+ID + ++  +    D V + +       ++D L  G  V   V++I  +GV +S    
Sbjct: 873  RAIDLSTRLSRVEGKEDVVDREIN------TVDDLKQGETVRGLVKNIAGHGVFVSLGRN 926

Query: 345  FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 404
             T  + I  L + +   +W++ +  ++ V+ +IL ++P S ++ +TL      +    + 
Sbjct: 927  VTARIMIKELFDEY-VKDWESRFEINQLVSGKILSINPKSNSIEMTLRKNPSKSAKKTAL 985

Query: 405  VKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEG 460
            + + D  +  KVV V R     G+ L I  + VS   + + ++D  + +V +  K ++EG
Sbjct: 986  LSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADVAQALKGFREG 1045

Query: 461  SCVRVRILGFRHLEGLATGILKASAF 486
              V+ +I+     +G  +  +KAS F
Sbjct: 1046 DQVKAKIVSIDTEKGKISFGIKASYF 1071



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 109/514 (21%), Positives = 217/514 (42%), Gaps = 63/514 (12%)

Query: 367  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPPS--HVKVGDIYDQSKVVRVDRG 422
            +     V AR+L+++P    V LTL    L +    P S   +KVG++   S +  VD+G
Sbjct: 572  FKPEASVKARVLYLEPARNRVVLTLKKTFLESDLAVPQSFEDLKVGEVTLGSVLKIVDKG 631

Query: 423  LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 482
            +     I        A++  S+ ++  ++ L + +  G  + VR++            +K
Sbjct: 632  V-----IVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITLDPSTSRIVVSVK 686

Query: 483  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFE---IVK 538
             +A          ++ G  V G V  V +   +V+  G G+ AL  L ++S      I +
Sbjct: 687  QAAPTAPATAAEKLEVGEAVSGTVSQVHTEQVVVKLEGSGLIALLSLSNLSNQRHTGIEE 746

Query: 539  PGKKFKVGAELVFRVLGVK---SKRITVTHKKTLVKSKLAI---------LSSYAEATDR 586
              +  K G ++   V+  K   S  I V  KKT+   K            +S+  +A D 
Sbjct: 747  LRRSLKQGEKIDDLVVVSKNPVSGLIIVNIKKTIAAKKEKEKKEDKAPSGISANVKAIDA 806

Query: 587  L----ITHGWITKIEKHGCFVRFYNGVQGFA----PRSELGLDPGCEPSSMYHVGQVVKC 638
            +    I  G + +    G  ++  N ++G         +L +  G  P S   +G+ V C
Sbjct: 807  IEVGQIVTGTVQEQTPQGYMIQLPNNLRGRVHPCDSSDDLVVAAGRGPLS---IGEEVTC 863

Query: 639  RIMSSIPASRRINLSFMMKPTRVSED---------DLVKLGSLVSGVVDVVTPNAVVVYV 689
             +++   + R I+LS  +      ED         D +K G  V G+V  +  + V V  
Sbjct: 864  YVLAVNKSKRAIDLSTRLSRVEGKEDVVDREINTVDDLKQGETVRGLVKNIAGHGVFVS- 922

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYS 744
            + +  +   +  E   ++++         +  +E +QL     L ++ +S+++ ++ + +
Sbjct: 923  LGRNVTARIMIKELFDEYVKD-------WESRFEINQLVSGKILSINPKSNSIEMTLRKN 975

Query: 745  LINSAQQLP-SDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADL 802
               SA++      S       V   V  +   G F++  G  ++G   +S+  D ++AD+
Sbjct: 976  PSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADV 1035

Query: 803  S---KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            +   K +  G  V++ I+ +++E G+I+  +K S
Sbjct: 1036 AQALKGFREGDQVKAKIVSIDTEKGKISFGIKAS 1069


>gi|58267098|ref|XP_570705.1| rRNA processing-related protein [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57226939|gb|AAW43398.1| rRNA processing-related protein, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 1484

 Score =  150 bits (378), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 215/908 (23%), Positives = 378/908 (41%), Gaps = 116/908 (12%)

Query: 4   SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLT 63
           SS+K+Q +SS   P+   A  +  +N                    D   FPRGGG SLT
Sbjct: 14  SSKKTQNESSSTAPRPAPAFTSTLQN--------------------DETDFPRGGGSSLT 53

Query: 64  QRERDEIHAE--VDAEFEAVERGLHKKNKKKKKKTERKA-----NETVDDLGSLFGDGIS 116
             E  ++  E   +AE EA  +   K  K+K++ ++R+A     NE          D I 
Sbjct: 54  AFEFKQVREEGRREAENEAKHQA-SKGEKRKRQMSDRQAKRLKKNEDAKKKEERDKDNIR 112

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN 173
            ++  Y      K +  G  +   V  +    L++ LP  L     +   ++ L  +L  
Sbjct: 113 VEILNY------KRLVPGTHVLARVHTILPLHLILSLPNNLLAHVPITEISNTLTQLLTA 166

Query: 174 E------------IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE--------IGKRKIW 213
           E             + +    L  +F  GQ V   VL L     +            K+ 
Sbjct: 167 EEAMAVDEGEEESDDESSAPDLAQLFVPGQYVHAKVLTLYPTASQSFISQYPITETTKLA 226

Query: 214 LSLRLSLLYKGLSLETVQE----GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRN 264
             + L+L+ + ++ E  ++    G  L   VKS ED G+I+  GL      S  GF+ ++
Sbjct: 227 SRVELTLIPEKVNSEVAKKDLETGYFLVGEVKSEEDKGWIVGVGLNTQGGSSVEGFVSKD 286

Query: 265 NLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323
            +A+      + PG LL   + SI    +V +LS +   +++    ++   ++  +VPG 
Sbjct: 287 EVAKFVPAQALIPGQLLPATISSIAAGGRVAHLSLNQQDITRSQISEVS--TVGSIVPGH 344

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---- 379
            V+  + +++ +G+ +    +F GT+D+ HL       + +N Y   KK+ AR+++    
Sbjct: 345 SVNALITAVVPSGLNVKVAGFFDGTIDLAHL--PLGEDDIENKYKIGKKIRARVIYDNLA 402

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIP 430
            +P S A  L+  P++L+  +P            + +G +Y   KV RV    G+++   
Sbjct: 403 ANPHSFA--LSALPHVLNFTSPTQEGDNTPLELAIPIGKVYQSVKVTRVLNDWGVMV--- 457

Query: 431 STPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            T      +V IS +A+E +  L     ++K G+  R R++G   ++G+     + S   
Sbjct: 458 RTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLS 517

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
            L     ++K G  +KG +  +      V   G V  +    H ++  +  P K+FK   
Sbjct: 518 QLFMQVDELKVGQQLKGTIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEG 577

Query: 548 ELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            +  RVL ++    R+ +T KKT ++S LA+   + +     +T G + KI   G  V  
Sbjct: 578 SVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGVIVEL 637

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           + G++ F P SE         S  +++G+ +  R+++   ++ RI +S            
Sbjct: 638 FAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVITVDASASRIVVSAKQAAPTAPATA 697

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPG 721
             KL  G  VSG V  V    VVV +   G +   +   +L++   H  +  ++  +K G
Sbjct: 698 AEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRRSLKEG 755

Query: 722 YEFDQLLVLD-NESSNLL-------LSAKYSLINSAQQLPSDAS-------HIHPNSVVH 766
            + D L+V+  N  S L+       ++AK        + PS  S        I    ++ 
Sbjct: 756 EKIDDLVVVSKNPVSGLIIVNIKKTITAKKEKAKKEDKAPSGISAHVKAIDAIEVGQIIT 815

Query: 767 GYVCNIIETGCFVRFLGRLTG-FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
           G V      G  V+    L G   P   + D   A       VG+ V+  +LDVN     
Sbjct: 816 GTVQEQTSQGYMVQLPNNLRGRVHPCDSSDDLALAAGHGPLTVGEEVKCYVLDVNRSKRA 875

Query: 826 ITLSLKQS 833
           I LS + S
Sbjct: 876 IDLSTRLS 883



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 130/238 (54%), Gaps = 27/238 (11%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  G I+ G + +  S   G +VQ+  +L GRVH       C S        G   PL+ 
Sbjct: 808  IEVGQIITGTVQEQTSQ--GYMVQLPNNLRGRVH------PCDSSDDLALAAGH-GPLT- 857

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               G+ VKC VL+++R+ R    ++LS R S + G  +    +++T           ++D
Sbjct: 858  --VGEEVKCYVLDVNRSKRA---IDLSTRLSRVQGKENVVDREINT-----------VDD 901

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L     V+G VKN+   G F+ L R + A++++  L D YV+  +  F I +LV+G++LS
Sbjct: 902  LKEGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILS 961

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            + P S  +E+TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+
Sbjct: 962  INPGSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNV 1019



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 121/528 (22%), Positives = 222/528 (42%), Gaps = 83/528 (15%)

Query: 373  VNARILFVDPTSRAVGLTLNP-YLLHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLD 428
            V AR+L+++PT   V LTL   +L  + A P     +KVG++   S +  VD+G+     
Sbjct: 579  VKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGV----- 633

Query: 429  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL---KASA 485
            I        A++  S+ ++  ++ L + +  G  + VR++    ++  A+ I+   K +A
Sbjct: 634  IVELFAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVI---TVDASASRIVVSAKQAA 690

Query: 486  FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFE---IVKPGK 541
                      ++ G  V G V  V +   +V+  G G+ AL  L ++S      I +  +
Sbjct: 691  PTAPATAAEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLTALLSLSNLSNQRHTGIEELRR 750

Query: 542  KFKVGAELVFRVLGVK---SKRITVTHKKTLVKSKLAI---------LSSYAEATDRL-- 587
              K G ++   V+  K   S  I V  KKT+   K            +S++ +A D +  
Sbjct: 751  SLKEGEKIDDLVVVSKNPVSGLIIVNIKKTITAKKEKAKKEDKAPSGISAHVKAIDAIEV 810

Query: 588  --ITHGWITKIEKHGCFVRFYNGVQGFA----PRSELGLDPGCEPSSMYHVGQVVKCRIM 641
              I  G + +    G  V+  N ++G         +L L  G  P +   VG+ VKC ++
Sbjct: 811  GQIITGTVQEQTSQGYMVQLPNNLRGRVHPCDSSDDLALAAGHGPLT---VGEEVKCYVL 867

Query: 642  SSIPASRRINLSFMMKPTRVSED---------DLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
                + R I+LS  +   +  E+         D +K G  V G+V  +  + V V +   
Sbjct: 868  DVNRSKRAIDLSTRLSRVQGKENVVDREINTVDDLKEGESVRGLVKNIAGHGVFVSLGRN 927

Query: 693  GYSKGTIPT---EHLADHLEHATVMKSV------IKPGYEFDQLLVLDNESSNLLLSAKY 743
              ++  I     E++ D      + + V      I PG    ++ +  N S +   +A  
Sbjct: 928  VTARIMIKELFDEYVKDWKSRFEINQLVSGKILSINPGSNSIEMTLRKNPSKSAKKTALL 987

Query: 744  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADL 802
            SL           S       V   V  +   G F++  G  ++G   +S+  D ++AD+
Sbjct: 988  SL-----------SDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDNRKADV 1036

Query: 803  S---KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
            +   K +  G  V++ I+ +++E G+I+  +K        AS+  E F
Sbjct: 1037 AQALKGFREGDQVKAKIVSIDTEKGKISFGIK--------ASYFGEEF 1076



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 130/272 (47%), Gaps = 14/272 (5%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGIDVKPGLLLQG-- 282
            +++ ++ G ++T  V+     GY++   LP+   G +   + +++  +    G L  G  
Sbjct: 804  AIDAIEVGQIITGTVQEQTSQGYMVQ--LPNNLRGRVHPCDSSDDLALAAGHGPLTVGEE 861

Query: 283  ---VVRSIDRTRKVVYLSSDPDTVS-KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
                V  ++R+++ + LS+    V  K    D +  ++D L  G  V   V++I  +GV 
Sbjct: 862  VKCYVLDVNRSKRAIDLSTRLSRVQGKENVVDREINTVDDLKEGESVRGLVKNIAGHGVF 921

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            +S     T  + I  L + +   +WK+ +  ++ V+ +IL ++P S ++ +TL      +
Sbjct: 922  VSLGRNVTARIMIKELFDEY-VKDWKSRFEINQLVSGKILSINPGSNSIEMTLRKNPSKS 980

Query: 399  RAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLE 454
                + + + D  +  KVV V R     G+ L I  + VS   + + I+D  + +V +  
Sbjct: 981  AKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDNRKADVAQAL 1040

Query: 455  KKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
            K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1041 KGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|387192690|gb|AFJ68666.1| rrna biogenesis protein rrp5, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 578

 Score =  150 bits (378), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 192/405 (47%), Gaps = 38/405 (9%)

Query: 93  KKKTERKANETVDDLGSLFGDGISGKLPRYANKIT---LKNISAGMKLWGVVAEVNEKDL 149
           K+ TE   NE    L    G G   K+ R   +I+   LK +  G  + GVV  V  KD+
Sbjct: 104 KEATEGFHNEA-SKLTQAVGLGCVTKIGRAVPQISPICLKQMVRGTAVLGVVIRVGPKDV 162

Query: 150 VICLPGGLRGLARAADALDPI-----------LDNEIEANED--NLLPTIFHVGQLVSCI 196
            + LPGGL G     +  DP            + + +   ED    + T    GQ+V  +
Sbjct: 163 SVALPGGLSGRVPLVEVSDPFFSRFSPSVNGTISDPVSEKEDLIKAVSTFLRPGQVVRAV 222

Query: 197 VLQLDDDKKE----------IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
           V   +   ++             +K+ L+LR S + +GL LE V  G  L   V S+EDH
Sbjct: 223 VSSSNAASRKQSAGGAGSGGRASQKVPLTLRASAVNRGLKLEHVLPGGALMGAVASVEDH 282

Query: 247 GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL----LQGVVRSIDRTRKVVYLSSDPDT 302
           GY++  GL   T FL R ++    G +V+  L+    ++ VV  +    + +    DP  
Sbjct: 283 GYVVSTGLEGVTAFLARKHV--KGGAEVEKALVKGSPVEIVVLDVKEASRAITCGFDPAV 340

Query: 303 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 362
           + + +T+    +++  L PGM+V+  + +IL+NG+ L+FL   +G V + HL   +   +
Sbjct: 341 LPRALTRG-SALTLAGLKPGMLVNAAIDAILKNGLALTFLGGLSGVVSLEHLDRPYAEND 399

Query: 363 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRG 422
           W+  Y     +  R+L VD  S++V LTL  +LL  RAP    ++G +  ++KV+RVD  
Sbjct: 400 WRKRYRLGDILQVRVLMVDVKSKSVYLTLRAHLLGMRAPSGLPELGQVLSEAKVLRVDPT 459

Query: 423 LGLLLD-IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
            GL+L  +P  P S        D  E+E R +E++       RVR
Sbjct: 460 KGLVLGFLP--PESVNGGTKDIDTCEDEGR-IEEELSGRRAKRVR 501


>gi|71004318|ref|XP_756825.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
 gi|46095627|gb|EAK80860.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
          Length = 1563

 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 186/747 (24%), Positives = 313/747 (41%), Gaps = 115/747 (15%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVE---------RGLHKKNKKKKKKTERKANETV 104
           FPRGG   LT  E  E   E  +E  A E         + L K+NK K+K    K N+T 
Sbjct: 49  FPRGGSSGLTPLEFREAKREARSESAANELLFKDAKDEQALAKRNKIKQKHNREKRNDTK 108

Query: 105 DDLGSLFGDGISGKLPRYANK----ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG- 159
                      + +  +  +     I  K +  G +L   V  ++   +V+ LP  + G 
Sbjct: 109 KKRTPAAASAPTMRAEKSEHHRIEHINYKRLVPGSRLLCSVLAIHPIAVVVSLPNQMLGH 168

Query: 160 -------------LARAADALDPILDNEIE------------ANEDNLLPT--------- 185
                        L  AADA     D + +              E N  P          
Sbjct: 169 IPATQISPQFTHRLQVAADASAEHDDQDEDMSTEEDSESDDDDAETNSAPNKRSKKDVTK 228

Query: 186 ------IFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSL 227
                 +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+
Sbjct: 229 VPELSELFHVGQWLVASVVQVHSGDVAKGRPTREGGEYEKESRRVELSLSPHLVNTGVSI 288

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF--------LPRNNLAENSGIDVKPGLL 279
             +  G  L+A + S+EDHGY+L  G+P F GF        LP +  A  +G  ++ G +
Sbjct: 289 SDLDVGASLSATISSVEDHGYMLDSGIPEFRGFVGFSDVARLPASFHAGKNGKSLEVGSV 348

Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
           +   +  I  +++    + DP TVS    K     SI  ++PG +    V + L  G+ +
Sbjct: 349 VFAKITKIPESKRSFEATLDPKTVSTSPIKHTP--SITAILPGTLTKVLVTAALPTGLNV 406

Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RA 386
                F  T+D FHL       +  + Y +  K  AR+L+  + P S           R 
Sbjct: 407 KLFGMFDATIDRFHLPELPQGKDISDVYKEGSKHVARVLWDLLSPPSTALQSDIPEHERK 466

Query: 387 VGLTLNPYLLHNRAPPSHVK--------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
           +GL+L P +L   AP +  +        +G I  +  VV+     GL++ +  T +    
Sbjct: 467 LGLSLAPQVLALEAPVAKDQQLLQHAYPIGAIL-KVTVVQTINDWGLVVSVHDTDLR--G 523

Query: 439 YVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
           +V IS V+++ V  L      + + +  + R++G    +      LKAS  E      S+
Sbjct: 524 FVHISQVSDDHVVSLPPSSGPFAKETVHKARVVGHSPTDRTLQLSLKASVLERKFMRVSE 583

Query: 496 VKPGMVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           V+ G VV   +I +    AI +Q  G V  +    H ++ ++ +P K++K G  +  RV+
Sbjct: 584 VEVGEVVTANIIKLGLPNAIFLQLQGHVDGVVFSNHFADVKLTQPEKRYKPGLSVKARVM 643

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V     RI +T KK+LVKS L I++S  +A   ++T+  + +++ +   V  + G++  
Sbjct: 644 DVDPNRNRIVLTLKKSLVKSDLPIVASMQDARIGVVTNATVFRVQTNSLIVSLFGGLKAL 703

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 666
            P  E+  +   +  S +  G+V+K RI         +  S +  L   +    V   D 
Sbjct: 704 VPGREVSENDFNDVKSSFTEGKVIKIRITEVDYENQKVVGSIKQTLPEYLAKLNV---DA 760

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKG 693
           V++G  V+G V  V    VV+ ++  G
Sbjct: 761 VEVGDKVTGKVAAVHKEVVVLTLVPTG 787



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 154/663 (23%), Positives = 292/663 (44%), Gaps = 111/663 (16%)

Query: 871  GFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSV 919
             + IG++++  V ++ ND+G+VVS  + +D+ GF+   Q++   V S           +V
Sbjct: 492  AYPIGAILKVTVVQTINDWGLVVSVHD-TDLRGFVHISQVSDDHVVSLPPSSGPFAKETV 550

Query: 920  IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
             +A ++  +  +R + LSLK   ++R             K  R +  ++G   T N I++
Sbjct: 551  HKARVVGHSPTDRTLQLSLKASVLER-------------KFMRVSEVEVGEVVTAN-IIK 596

Query: 980  IVKENYLVLSLPEYNHSIGYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRL 1037
            +   N + L L    H  G    + +   K   P+K++  G SV A VM +       R+
Sbjct: 597  LGLPNAIFLQL--QGHVDGVVFSNHFADVKLTQPEKRYKPGLSVKARVMDV--DPNRNRI 652

Query: 1038 LLLLK-AISETE---TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
            +L LK ++ +++    +S + A+      +G +  A +  ++   L +    G    +  
Sbjct: 653  VLTLKKSLVKSDLPIVASMQDAR------IGVVTNATVFRVQTNSLIVSLFGGLKALVPG 706

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFLWELSIKPSMLTVSEIG 1151
             EV+++  N V+   S+F  G+ +  RI  +   N+  +        SIK    T+ E  
Sbjct: 707  REVSENDFNDVK---SSFTEGKVIKIRITEVDYENQKVVG-------SIKQ---TLPEYL 753

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILD--SAYEPSELQEFQRR 1209
            +KL  +   V +G +VTG V  V  E  +LT+       L  L   ++   +  QE    
Sbjct: 754  AKLNVDA--VEVGDKVTGKVAAVHKEVVVLTLVPTGVRALLSLSVLASMRNTTSQELLES 811

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT-FIHEGDIVGGRIS 1268
                + +   V+S     K + +V    +   S K+ D+ N+   +  + +G++V GR+ 
Sbjct: 812  LEEDQEIEDLVVSAKNPAKGIVIVADKVR---SSKSEDVENNGSTSGQVKQGNVVQGRVI 868

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTEL-----KNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
            +        VV +G      +H T+L     +N+ +  P                 GQ +
Sbjct: 869  QKNDKYLDCVVALGTATRATLHVTDLADDFSRNVSLPSP-----------------GQTL 911

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            +C ++ +    +      +S R S    S       S +V  P   +  I DL+    V+
Sbjct: 912  QCYIVSLKSNGKSAV---ISTRPSRVAASD------SAEVTDP--EISSISDLAKGQKVR 960

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G+VK +T+ G F+ + RKLDA+V +  L D +V   +  F +G++V+G ++     +  +
Sbjct: 961  GFVKAITNVGLFVTVGRKLDARVQVRELFDEFVRDWKTRFTVGQVVSGTIMDTNVHNNEI 1020

Query: 1444 EVTLKTSDSRTASQSE-------------INNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            E++LK++      ++E                L++  VGD V G +K +  +G+F+ IE 
Sbjct: 1021 EMSLKSTPGSIKPRAERAEERALLDAKKRPKRLADFKVGDKVKGFVKNIIGFGVFVQIEG 1080

Query: 1491 TNL 1493
            TN+
Sbjct: 1081 TNV 1083



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 118/531 (22%), Positives = 213/531 (40%), Gaps = 49/531 (9%)

Query: 446  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVV 502
            A+ ++ + EK+YK G  V+ R++            LK S  +    +V +  D + G+V 
Sbjct: 621  ADVKLTQPEKRYKPGLSVKARVMDVDPNRNRIVLTLKKSLVKSDLPIVASMQDARIGVVT 680

Query: 503  KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR 560
               V  V +   IV   GG+KAL P   +SE +       F  G  +  R+  V  ++++
Sbjct: 681  NATVFRVQTNSLIVSLFGGLKALVPGREVSENDFNDVKSSFTEGKVIKIRITEVDYENQK 740

Query: 561  ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY-NGVQGFAPRSELG 619
            +  + K+TL +    +     E  D++   G +  + K    +     GV+     S L 
Sbjct: 741  VVGSIKQTLPEYLAKLNVDAVEVGDKVT--GKVAAVHKEVVVLTLVPTGVRALLSLSVLA 798

Query: 620  LDPGCEPS----SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--------DLV 667
                        S+    ++    + +  PA   + ++  ++ ++ SED          V
Sbjct: 799  SMRNTTSQELLESLEEDQEIEDLVVSAKNPAKGIVIVADKVRSSK-SEDVENNGSTSGQV 857

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 727
            K G++V G V +   +  +  V+A G +  T  T H+ D  +  +   S+  PG      
Sbjct: 858  KQGNVVQGRV-IQKNDKYLDCVVALGTA--TRATLHVTDLADDFSRNVSLPSPGQTLQCY 914

Query: 728  LV-LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 780
            +V L +   + ++S + S + ++          S  S +     V G+V  I   G FV 
Sbjct: 915  IVSLKSNGKSAVISTRPSRVAASDSAEVTDPEISSISDLAKGQKVRGFVKAITNVGLFVT 974

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               +L       +  D    D    + VGQ V   I+D N     I +SLK     ST  
Sbjct: 975  VGRKLDARVQVRELFDEFVRDWKTRFTVGQVVSGTIMDTNVHNNEIEMSLK-----STPG 1029

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            S        EE+ A+L + K      K +  F +G  ++G V     FGV V   E ++V
Sbjct: 1030 SIKPRAERAEER-ALLDAKKRP----KRLADFKVGDKVKGFVKNIIGFGVFVQI-EGTNV 1083

Query: 901  YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFID 944
             G    ++L+    +        G  ++A +L + + ++ +   LK  + D
Sbjct: 1084 SGLAHMNELSDGKADEALKAFRVGDKVRAIVLRINEEKKKISFGLKPSYFD 1134



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 749  AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYY 807
            A++ P   +       V G+V NII  G FV+  G  ++G A  ++  DG+  +  K + 
Sbjct: 1046 AKKRPKRLADFKVGDKVKGFVKNIIGFGVFVQIEGTNVSGLAHMNELSDGKADEALKAFR 1105

Query: 808  VGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            VG  VR+ +L +N E  +I+  LK S   + D
Sbjct: 1106 VGDKVRAIVLRINEEKKKISFGLKPSYFDAAD 1137


>gi|360043001|emb|CCD78412.1| putative programmed cell death protein 11 (pre-rRNA processing
           protein rrp5) [Schistosoma mansoni]
          Length = 1880

 Score =  147 bits (370), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 180/781 (23%), Positives = 325/781 (41%), Gaps = 103/781 (13%)

Query: 139 GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-----DNL--LPTIFHVGQ 191
           GV+  V +  L + LP G  G     D  D   +   E+ E     D+L  L  +F VGQ
Sbjct: 9   GVIKSVQKLYLEVQLPHGFLGRVNIYDVSDKYTELLRESAESGIIQDDLVELSDMFKVGQ 68

Query: 192 LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
            V C + + D+ +     ++  +SL   ++ K +  + V+  MV    V S+EDHGYI+ 
Sbjct: 69  TVRCFIKEADNSRGSGSTKRYIVSLNPKMVNKAVISKNVKPHMVFVGSVVSVEDHGYIVD 128

Query: 252 FGLPSFTGFLPRN----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 307
            G+     FLP++    NL   S I   P +    V  S   +++V+ +++  D+    +
Sbjct: 129 PGVARMNCFLPKDQVDVNLDIGSLIPFTPHVSDPLVNSS---SKRVLKVTTRLDSTLSVL 185

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
           + D + ++ D ++PG  +   +   + + ++  F  YF       ++ N       K DY
Sbjct: 186 SPDSR-VNFDCMLPGTCLHASIVKKVTSTLVAEFSEYFVSISRTHYIGN-------KEDY 237

Query: 368 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRV 419
               KV   I+ VDP+++ +  +L P+L+ N  P         S   VG  +  S V RV
Sbjct: 238 QIGAKVFVCIILVDPSTKQLTGSLLPHLV-NPIPSVLNISEMLSKCPVGTRFSGSLVERV 296

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 479
           ++   +L+ +P T     A + I     +      K    GS +  RI     LE +A  
Sbjct: 297 NKR-AVLVKLPKTN-GLKAVIRIPKTGTKNNENF-KSLVVGSKLTCRITDHDFLENVAVA 353

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
                       +  ++KPG  V   V      G +V   G +  L P  H ++  +   
Sbjct: 354 TTNKKLLSLPFLSLHELKPGNKVSATVKRYSKTGIVVHLEGRIHGLIPYLHTTDINLKDH 413

Query: 540 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT-------DRLITH 590
            +KFK G ++   VL +   + ++ +T K  L+ ++L I  S+   +       ++L+  
Sbjct: 414 REKFKAGEKVSCLVLQLDECANKLILTAKPGLLNAELPIFGSHEMYSALKNGNNNQLLIV 473

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR- 649
           G+I K+ + G  +   + ++G+ PR E GL       + ++ GQV+K +    I  S   
Sbjct: 474 GFIVKVSEKGLLISGLDNIRGWIPRRETGLADEDILQTNFYRGQVLKMKFKREINISSEN 533

Query: 650 --------------INLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
                         ++L F  K T+  +    + V++G L    V+ V    + + +  K
Sbjct: 534 EVEKDSRNIRSKYMLSLKFHSKKTKNMQSIFLNSVQIGQLFRATVNQVQDTGISLNLYDK 593

Query: 693 GYSKGTIPT--------EHLADHLEHATVMKSV---IKPGYEFD------QLLVLDNESS 735
             +    P           L+D+  +  ++      IKPG   D       ++V+D    
Sbjct: 594 NINDTVTPVLGTGFLSFSQLSDYESNQQLLSRYIKNIKPGSTLDWNHSARNVVVIDKGKQ 653

Query: 736 NLLLSAKYSLINSAQQLP-----------SDASHIHP-----------NSVVHGYVCNII 773
            ++LSA+ +L+ +A  L            S+AS   P            S    +V +  
Sbjct: 654 TVILSARPTLVQAASDLKTNINIDVDMVDSEASDKRPGFLRTFDELQVGSQWFAWVSHHK 713

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           + G FV F   + G AP+    D +     + ++ + VG +V + I++V  E     +SL
Sbjct: 714 DYGVFVHFPAGIYGLAPKHLLSDFRTQSNTNWTELFPVGATVITKIVEVTPEKCHCLISL 773

Query: 831 K 831
           K
Sbjct: 774 K 774


>gi|134111727|ref|XP_775399.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258058|gb|EAL20752.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1484

 Score =  146 bits (369), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 215/911 (23%), Positives = 377/911 (41%), Gaps = 122/911 (13%)

Query: 4   SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLT 63
           SS+K+Q +SS   P+   A  +  +N                    D   FPRGGG SLT
Sbjct: 14  SSKKTQNESSSTAPRPAPAFTSTLQN--------------------DETDFPRGGGSSLT 53

Query: 64  QRERDEIHAE--VDAEFEAVERGLHKKNKKKKKKTERKA-----NETVDDLGSLFGDGIS 116
             E  ++  E   +AE EA  +   K  K+K++ ++R+A     NE          D I 
Sbjct: 54  AFEFKQVREEGRREAENEAKHQA-SKGEKRKRQMSDRQAKRLKKNEDAKKKEERDKDNIR 112

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN 173
            ++  Y      K +  G  +   V  +    L++ LP  L     +   ++ L  +L  
Sbjct: 113 VEILNY------KRLVPGTHVLARVHTILPLHLILSLPNNLLAHVPITEISNTLTQLLTA 166

Query: 174 E------------IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE--------IGKRKIW 213
           E             + +    L  +F  GQ V   VL L     +            K+ 
Sbjct: 167 EEAMAVDEGEEESDDESSAPDLAQLFVPGQYVHAKVLTLYPTASQSFISQYPITETTKLA 226

Query: 214 LSLRLSLLYKGLSLETVQE----GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRN 264
             + L+L+ + ++ E  ++    G  L   VKS ED G+I+  GL      S  GF+ ++
Sbjct: 227 SRVELTLIPEKVNSEVAKKDLETGYFLVGEVKSEEDKGWIVGVGLNTQGGSSVEGFVSKD 286

Query: 265 NLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323
            +A+      + PG LL   + SI    +V +LS +   +++    ++   ++  +VPG 
Sbjct: 287 EVAKFVPAQALIPGQLLPATISSIAAGGRVAHLSLNQQDITRSQISEVS--TVGSIVPGH 344

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---- 379
            V+  + +++ +G+ +    +F GT+D+ HL       + +N Y   KK+ AR+++    
Sbjct: 345 SVNALITAVVPSGLNVKVAGFFDGTIDLAHL--PLGEDDIENKYKIGKKIRARVIYDNLA 402

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIP 430
            +P S A  L+  P++L+  +P            + +G +Y   KV RV    G+++   
Sbjct: 403 ANPHSFA--LSALPHVLNFTSPTQEGDNTPLELAIPIGKVYQSVKVTRVLNDWGVMV--- 457

Query: 431 STPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            T      +V IS +A+E +  L     ++K G+  R R++G   ++G+     + S   
Sbjct: 458 RTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLS 517

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
            L     ++K G  +KG +  +      V   G V  +    H ++  +  P K+FK   
Sbjct: 518 QLFMQVDELKVGQQLKGTIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEG 577

Query: 548 ELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            +  RVL ++    R+ +T KKT ++S LA+   + +     +T G + KI   G  V  
Sbjct: 578 SVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGVIVEL 637

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           + G++ F P SE         S  +++G+ +  R+++   ++ RI +S            
Sbjct: 638 FAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVITVDASASRIVVSAKQAAPTAPATA 697

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPG 721
             KL  G  VSG V  V    VVV +   G +   +   +L++   H  +  ++  +K G
Sbjct: 698 AEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRRSLKEG 755

Query: 722 YEFDQLLVLD-NESSNLL-------LSAKYSLINSAQQLPSDAS-------HIHPNSVVH 766
            + D L+V+  N  S L+       ++AK        + PS  S        I    ++ 
Sbjct: 756 EKIDDLVVVSKNPVSGLIIVNIKKTITAKKEKAKKEDKAPSGISAHVKAIDAIEVGQIIT 815

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR----ADLSKTYYVGQSVRSNILDVNSE 822
           G V      G  V+    L G   R    D       A       VG+ V+  +LDVN  
Sbjct: 816 GTVQEQTSQGYMVQLPNNLRG---RVHPCDSSDYLVLAAGHGPLTVGEEVKCYVLDVNRS 872

Query: 823 TGRITLSLKQS 833
              I LS + S
Sbjct: 873 KRAIDLSTRLS 883



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 131/238 (55%), Gaps = 27/238 (11%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  G I+ G + +  S   G +VQ+  +L GRVH  +  +  V     G       PL+ 
Sbjct: 808  IEVGQIITGTVQEQTSQ--GYMVQLPNNLRGRVHPCDSSDYLVLAAGHG-------PLT- 857

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               G+ VKC VL+++R+ R    ++LS R S + G  +    +++T           ++D
Sbjct: 858  --VGEEVKCYVLDVNRSKRA---IDLSTRLSRVQGKENVVDREINT-----------VDD 901

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L     V+G VKN+   G F+ L R + A++++  L D YV+  +  F I +LV+G++LS
Sbjct: 902  LKEGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILS 961

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            + P S  +E+TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+
Sbjct: 962  INPGSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNV 1019



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 124/279 (44%), Gaps = 28/279 (10%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG--- 282
            +++ ++ G ++T  V+     GY++          LP N        D    L+L     
Sbjct: 804  AIDAIEVGQIITGTVQEQTSQGYMVQ---------LPNNLRGRVHPCDSSDYLVLAAGHG 854

Query: 283  ----------VVRSIDRTRKVVYLSSDPDTVS-KCVTKDLKGISIDLLVPGMMVSTRVQS 331
                       V  ++R+++ + LS+    V  K    D +  ++D L  G  V   V++
Sbjct: 855  PLTVGEEVKCYVLDVNRSKRAIDLSTRLSRVQGKENVVDREINTVDDLKEGESVRGLVKN 914

Query: 332  ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
            I  +GV +S     T  + I  L + +   +WK+ +  ++ V+ +IL ++P S ++ +TL
Sbjct: 915  IAGHGVFVSLGRNVTARIMIKELFDEY-VKDWKSRFEINQLVSGKILSINPGSNSIEMTL 973

Query: 392  NPYLLHNRAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAE 447
                  +    + + + D  +  KVV V R     G+ L I  + VS   + + I+D  +
Sbjct: 974  RKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDNRK 1033

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
             +V +  K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1034 ADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|403159936|ref|XP_003320504.2| hypothetical protein PGTG_02526 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169342|gb|EFP76085.2| hypothetical protein PGTG_02526 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1909

 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 215/889 (24%), Positives = 359/889 (40%), Gaps = 161/889 (18%)

Query: 14  KDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAE 73
           KD  K   A++   +  KK  N   +   L     D++  FPRGGG  LT  E+ E  A+
Sbjct: 109 KDPKKKEPAAEPDQRKFKKPKNQPTDPPRLPTSTADEID-FPRGGGIQLTAYEQAE--AK 165

Query: 74  VDAEFEAVERGLH-------KKNKKKKKKTERKANET----------VDDLGSLFGDGIS 116
            D   EA ER LH       K + KK+  +E K  ++           ++ GS   D   
Sbjct: 166 RDGAQEA-ERHLHSLEPSQPKPHSKKRTLSESKTTDSGKAKGKKRAQDEEPGSHIADAYR 224

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG------LAR-------- 162
                    +  K +  G+KL G++ +V   +L++ LP  L G      ++R        
Sbjct: 225 ------VEHLNHKRLIPGIKLAGMIIQVRPLELIVALPSHLLGHVPITEISRQYTQRLTE 278

Query: 163 -AADALDPILDNEIEANEDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKR-------- 210
            A D    +  N      +N L     +F VGQ + C V++   +  +   R        
Sbjct: 279 TAEDDEGSVASNSDSDRTENALKGLDEMFTVGQWIRCSVIKTATEIPKGSLRASPLVRSA 338

Query: 211 -KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-------------- 255
            K+ L++    +  G+    +Q GM LT  VKSIED GYI+  G+               
Sbjct: 339 LKVTLTIDPVHINSGIDKSDLQGGMTLTGAVKSIEDRGYIIDLGISVDSNVDSATSQASA 398

Query: 256 -SFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR--------KVVYLSSDPDTVSKC 306
            + T F+   +  + +G++ +    LQ  V  +   R            +S +   +S+ 
Sbjct: 399 NNLTAFISFADATKATGVNHQDEPSLQWEVGQVIWCRINKLSENGATCMVSVNAQDISRS 458

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILE-NGVMLSFLTYFTGTVDIFHLQ-NTFPTTNWK 364
           V       +ID ++P  MVS  + S++   G+ ++ L +F  T+ + HL+ ++    +  
Sbjct: 459 VL--TAATNIDSILPLHMVSCLITSVIPGQGLNVTLLGFFKATIQVPHLECHSTAGVDLS 516

Query: 365 NDYNQHKKVNARILF-VDPTSRAVGLTLNPYLLHNR--------------AP--PSHVK- 406
             +   +K+ AR+L+   P+   V L  N  LL  +               P  P+H++ 
Sbjct: 517 EKFKVGQKLRARVLWDTIPSKNHVSLEGNESLLGPKIFSLSIFDHVVKLDTPGLPTHLQN 576

Query: 407 ----------------VGDIYDQSKVVRVDRGL-----------GLLLDIPSTPVSTPAY 439
                           +G  +   ++ RVD              GL ++I   PV+    
Sbjct: 577 GERTRCDKIDQLLLYPIGYTFQTVRIFRVDEEWGVYATCVNGEDGLPIEI-DPPVAFAHI 635

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
            TISD     + K    YK G+  + R+ G   ++G+    L+ S  E       D+  G
Sbjct: 636 ATISDSFLSCLSKDSGPYKVGTTHKARVTGVSPVDGVLQLTLQPSVVEQAYMRSEDIPIG 695

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
            ++ G +  + +   IV+  GG  A+    H S+ +   P KKF  GA++  RVL     
Sbjct: 696 ALMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPD 755

Query: 560 R--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR-- 615
           R  I +T +KTLV++   I++SY  A+        ITK+E+    + F+   +G  PR  
Sbjct: 756 RDQIVLTLRKTLVRAD-EIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAE 814

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG 675
           +E G     +P  ++  G++VK +I++     RRI  S      R + D+  KL    S 
Sbjct: 815 AEAGYVESMKP--IFTPGRLVKVKIINVDVEKRRILASV----KRSTSDEASKL----ST 864

Query: 676 VVDVVTPNAVVVYVIAKGY-----------------SKGTIPTEHLADHLE-HATVMKSV 717
           V+DV    +  V  I   +                  KG I  E LA   +     +K+ 
Sbjct: 865 VIDVGDQVSAFVTAIRNAFIQLDLRHINADPSSSEPVKGLISVEILAKKYDISPEALKNQ 924

Query: 718 IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVV 765
           +K G E   L+V   +    LL   Y   +  Q Q+      IH  ++V
Sbjct: 925 LKAGDEVKDLIVHTKDKEKELLIVGYKSASMPQEQMTGPIRFIHDKNLV 973



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 1315 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1374
            S Y +G  +   V++I +    T+   LS+R S D    TN S  S+  D P   + + +
Sbjct: 1296 SKYQDGSEITACVIQIDKKSLTTY---LSVRPS-DLNKLTNESLKSSVKDRP---IRQWK 1348

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +L     ++G+V+ VT  G  + +   + A+V + +L D  +   + +F IG++V+G+++
Sbjct: 1349 NLRIGTAIRGFVQRVTDHGLMLQVGTNIRAQVSVQDLFDEDMPDWKSKFRIGQVVSGKII 1408

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            S+     RV +    S  +     E      L +G I+  ++  +++YG+F+ +  + +
Sbjct: 1409 SLHNHKARVSLRENPSAPKGVPVWE-----KLQIGQILSTEVSNIQTYGMFLKVPKSKI 1462



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 105/222 (47%), Gaps = 18/222 (8%)

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV------SEDDLVKLGSLVSGVVDVV 680
           S  Y VG   K R+    P    + L+  ++P+ V      SED  + +G+L++G +  +
Sbjct: 650 SGPYKVGTTHKARVTGVSPVDGVLQLT--LQPSVVEQAYMRSED--IPIGALMNGTIKKL 705

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
           T   ++V +  +G     +  +H +D ++HA   K    PG +   ++L  + +   ++L
Sbjct: 706 TATNLIVRI--EGGHDAVVWPDHYSD-VKHAHPEKK-FAPGAKVKARVLYTNPDRDQIVL 761

Query: 740 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
           + + +L+ + + + S  S     +     +  + E    + F G   G  PR++A  G  
Sbjct: 762 TLRKTLVRADEIITSYES-ASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYV 820

Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             +   +  G+ V+  I++V+ E  RI  S+K+S  +S +AS
Sbjct: 821 ESMKPIFTPGRLVKVKIINVDVEKRRILASVKRS--TSDEAS 860


>gi|365991395|ref|XP_003672526.1| hypothetical protein NDAI_0K00920 [Naumovozyma dairenensis CBS 421]
 gi|343771302|emb|CCD27283.1| hypothetical protein NDAI_0K00920 [Naumovozyma dairenensis CBS 421]
          Length = 1718

 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 173/696 (24%), Positives = 310/696 (44%), Gaps = 77/696 (11%)

Query: 183 LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
           LP++   F +GQ + C V+    L+   K+   ++I L++  S +      + +     +
Sbjct: 202 LPSLERYFKIGQWLRCCVITNSALEPKMKKKNSKRIELTIEPSRV-NPFQEDDLLRSTAV 260

Query: 237 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKV-V 294
              VKSIEDHG  L  G+ + TGF+ + +  +   +   PG + L  V +  DR+ +V +
Sbjct: 261 QCSVKSIEDHGATLDLGIENMTGFISKKDCPDFETL--LPGSVFLGNVFKKSDRSVQVNM 318

Query: 295 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
             ++  + +++         S+D +VPG  V    Q I   G+         G +   HL
Sbjct: 319 DFTNKKNKITQIS-------SVDAVVPGQSVDLLCQQITPRGINGKAFGLVPGFIGNAHL 371

Query: 355 QNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLH--NRAPP----SHV 405
           +  F   + K+ +     + ARI+ V       + + L++ P++L+  N+       S  
Sbjct: 372 R-VFKEEDLKHKFALGSNIQARIIAVLTNKENDKTLILSILPHILNLENKLKATESLSAF 430

Query: 406 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS-CVR 464
            +G  +D   V   D              S   Y+ + D    +V       +EG+  + 
Sbjct: 431 PIGYKFDSCDVKGRD--------------SDYLYLALDDDRIGQVHSSRVGEQEGTDKLP 476

Query: 465 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGV 522
            R+LGF  ++ +   +      +       D+  G ++ G ++  V S G  ++ F G  
Sbjct: 477 ARVLGFNSVDDVYELVTAPETLKLKYLRTKDIPVGELLTGCEIETVSSKGMKLKIFNGQF 536

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK----SKLAIL 577
            A  P  H+S+  +V P +KFK+G+++  RVL V  K R+ VT KKTLV     S +  +
Sbjct: 537 TATVPSLHISDTRLVYPERKFKIGSKVKARVLNVDEKGRVYVTLKKTLVNIEDDSDIQFI 596

Query: 578 SSYAEA-TDRLITHGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
           S+YA+A T +  +   +  +E    +GC V F+ G+  F P +E+       P     +G
Sbjct: 597 STYAQAKTIQEKSEKTVATVESFRPNGCIVSFFGGLTAFLPNAEISEVFVKRPEEHLRLG 656

Query: 634 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV----KLGSLVSG--VVDVV----TPN 683
           Q V  +I+       R     M+   ++S D       ++  L+ G  +VDV     T  
Sbjct: 657 QTVIVKILKMDEEQSR-----MLVTCKISNDQAEQKKERIEKLIPGRSIVDVTVLEKTKE 711

Query: 684 AVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSA 741
           +++V +      +G +   HL+D  +E        I  G +   L++  +  + +  L+ 
Sbjct: 712 SLIVELQDVDL-RGVLYVGHLSDARIEQNRAAFKKIVVGSKLTGLVIDKDTRTQIFNLTL 770

Query: 742 KYSLINSAQQLPSDASHIHPNS-----VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
           K SL+  A++  S  S+    S      +HGYV +I   G FV F G+  G    S AV+
Sbjct: 771 KKSLLKDAEKESSPLSYADLKSKDKTTPLHGYVKSISNKGIFVAFNGKFVGLVLPSYAVE 830

Query: 797 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            +  D+SK +Y+ QSV + +L  + +  R  L+LK+
Sbjct: 831 SRDIDISKVFYINQSVTAYLLRTDDDNQRFLLTLKE 866



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 185/751 (24%), Positives = 315/751 (41%), Gaps = 120/751 (15%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC V F G LT F P ++  +       +   +GQ+V   IL ++ E  R+ ++    C 
Sbjct: 623  GCIVSFFGGLTAFLPNAEISEVFVKRPEEHLRLGQTVIVKILKMDEEQSRMLVT----CK 678

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSF 894
             S D +  ++                       +E  I G S+++  V E     ++V  
Sbjct: 679  ISNDQAEQKKE---------------------RIEKLIPGRSIVDVTVLEKTKESLIVEL 717

Query: 895  EEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFID 944
            ++  D+ G +    L+ A +E           GS +   ++D     ++ +L+LK   + 
Sbjct: 718  QD-VDLRGVLYVGHLSDARIEQNRAAFKKIVVGSKLTGLVIDKDTRTQIFNLTLKKSLLK 776

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVN--AIVEIVKENYLVLSLPEYNHSIGYASV 1002
               + +S       K K + +   G  ++++   I       ++ L LP Y        +
Sbjct: 777  DAEKESSPLSYADLKSKDKTTPLHGYVKSISNKGIFVAFNGKFVGLVLPSYAVESRDIDI 836

Query: 1003 SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETETSSS 1052
            S         K F   QSV A +  L +     R LL LK  +          ET     
Sbjct: 837  S---------KVFYINQSVTAYL--LRTDDDNQRFLLTLKEPTNKVTITTNSLETINPVD 885

Query: 1053 KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSN 1110
               K    +  G+LV+A+I  IK  +L +      HGRI + EV D+ S +   +   S 
Sbjct: 886  PSMKSLKDFTPGTLVKAQIKGIKKNQLNVILADNLHGRIDVAEVYDNLSEIKDTKQPLSG 945

Query: 1111 FKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
            FK G  V A+II   +    K         K    ELS+K S+L    +  K +    DV
Sbjct: 946  FKKGDIVKAKIIGTHDMKSHKFLPISHHAIKGTALELSLKTSVLGNPVVNMKSI---SDV 1002

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            S+G  + GYV    +++  LTIS  LKA++ I D A +  +  + +  F +G A+   V 
Sbjct: 1003 SVGDELIGYVNNYTSKFLWLTISPILKAKISIFDLAKDGLKGSDIESNFPLGCALPVTVT 1062

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            SI+ E  ++ +       G S   + I++      I  GD +  RI+K+      L++ +
Sbjct: 1063 SIDTEHGIINV------KGKSHTVISIAD------IKVGDRLPARITKVTERY--LLLDL 1108

Query: 1282 GPHLYGRVHFTE-LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            G  +      T+ L+N  +S  L    +G+        E + V  KVL +    +    +
Sbjct: 1109 GNGVSALSFATDALENFSLS--LVASFKGK--------ENKLVFVKVLSVDVESK---KI 1155

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             +SL+S     SS  S D                D+    IV   VKNV+ KG F+ LS 
Sbjct: 1156 HVSLKSDSAKSSSIKSHD----------------DIKQGDIVDALVKNVSDKGIFVYLSG 1199

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1460
             + A V +S LSD Y++  +K +   + V G+V+  +    R+ +TL+ S+      + +
Sbjct: 1200 SIQAFVPVSKLSDSYLKEWKKFYKPMQHVIGKVVKSDE-DDRILLTLRESEV-NGDLNIL 1257

Query: 1461 NNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
               S++ V D+  G +K V  +G+F+ ++NT
Sbjct: 1258 KGYSDIKVNDVFDGTVKNVTDFGVFVKLDNT 1288



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 138/325 (42%), Gaps = 23/325 (7%)

Query: 531  MSEFEIVKPGKK-------FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
            +S F++ K G K       F +G  L   V  + ++   +  K    KS   I  +  + 
Sbjct: 1032 ISIFDLAKDGLKGSDIESNFPLGCALPVTVTSIDTEHGIINVKG---KSHTVISIADIKV 1088

Query: 584  TDRLITHGWITKIEKHGCFVRFYNGVQG--FAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
             DRL     ITK+ +    +   NGV    FA  +          S      ++V  +++
Sbjct: 1089 GDRLPAR--ITKVTERYLLLDLGNGVSALSFATDALENFSLSLVASFKGKENKLVFVKVL 1146

Query: 642  SSIPASRRINLSFM---MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
            S    S++I++S      K + +   D +K G +V  +V  V+   + VY+   G  +  
Sbjct: 1147 SVDVESKKIHVSLKSDSAKSSSIKSHDDIKQGDIVDALVKNVSDKGIFVYL--SGSIQAF 1204

Query: 699  IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            +P   L+D   +    K   KP       +V  +E   +LL+ + S +N    +    S 
Sbjct: 1205 VPVSKLSDS--YLKEWKKFYKPMQHVIGKVVKSDEDDRILLTLRESEVNGDLNILKGYSD 1262

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            I  N V  G V N+ + G FV+      +TG A  ++  D Q  DLS  +  G  V++ +
Sbjct: 1263 IKVNDVFDGTVKNVTDFGVFVKLDNTVNVTGLAHITEIADTQPKDLSSLFGTGDRVKAFV 1322

Query: 817  LDVNSETGRITLSLKQSCCSSTDAS 841
            L VN    +++LSLK S  S   A+
Sbjct: 1323 LKVNPTKKQLSLSLKASRFSKDSAT 1347


>gi|323508229|emb|CBQ68100.1| related to RRP5-processing of pre-ribosomal RNA [Sporisorium
           reilianum SRZ2]
          Length = 1557

 Score =  143 bits (361), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 147/560 (26%), Positives = 255/560 (45%), Gaps = 53/560 (9%)

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 230
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+  +
Sbjct: 236 LRELFHVGQWLVASVVQVRSGDVAKGRPTREGGEYEKESRRVELSLAPHLVNAGVSVSDL 295

Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--------NSGIDVKPGLLLQG 282
             G  L+A + S+EDHGY+L  GL   +GF+P  + A+         +G  ++ G ++  
Sbjct: 296 DTGATLSAAISSVEDHGYMLDAGLAELSGFVPFTDAAKLPASFHAGKNGKSLQVGSVVFA 355

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            +  I   ++    + DP TV     K     SI  ++PG +    + + L  G+ +   
Sbjct: 356 KITRIPENKRSFDATLDPKTVRTSPIK--HAPSITAILPGTLTKVLITASLPTGLNVKLF 413

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 389
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R  GL
Sbjct: 414 GMFDATIDRFHLPELPEGKDIPDVYKEGSKHVARVLWDLLAPPSAALQGDNPDHERKFGL 473

Query: 390 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 442
           +L P +L   AP +       H        +  VV+     GL++ +  T +    +V I
Sbjct: 474 SLAPQVLALEAPVAKDDQLLQHAFPIGAALKVTVVQTINDWGLIVSVHDTDLR--GFVHI 531

Query: 443 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           S V+++ V  L      + +GS  + R++G    +      LKAS  E      S+V+ G
Sbjct: 532 SQVSDDHVVALPPSSGPFAKGSVHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 591

Query: 500 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
            VV   +I +    AI +Q  G V  +    H ++ ++ +P K+FK G ++  RV+ V  
Sbjct: 592 EVVNASIIKLGLPNAIFLQLQGHVDGVVFANHFADVKLTQPEKRFKPGLQVKARVMDVDP 651

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
              RI +T KK+LVKS L I++S  +A   ++T+  + +++ +   V  + G++   P  
Sbjct: 652 NRNRIVLTLKKSLVKSDLPIVASMQDARVGVVTNATVFRVQTNSLIVSLFGGLRALVPGR 711

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE--DDLVKLGSLV 673
           E+  D   +  S +  G+VVK RI      ++R+  S     P  +++   D V++G  V
Sbjct: 712 EVSEDDFNDVKSGFGEGKVVKMRITEVDYENQRLVGSIKQASPEYLAKLNVDAVEVGETV 771

Query: 674 SGVVDVVTPNAVVVYVIAKG 693
           +G V  V    VV+ ++  G
Sbjct: 772 TGKVAAVHKEVVVLTLVPSG 791



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 159/661 (24%), Positives = 285/661 (43%), Gaps = 107/661 (16%)

Query: 871  GFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV----------ESGSV 919
             F IG+ ++  V ++ ND+G++VS  + +D+ GF+   Q++   V            GSV
Sbjct: 496  AFPIGAALKVTVVQTINDWGLIVSVHD-TDLRGFVHISQVSDDHVVALPPSSGPFAKGSV 554

Query: 920  IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
             +A ++  +  +R + LSLK   ++R             K  R +  ++G      +I++
Sbjct: 555  HKARVVGHSPTDRTLQLSLKASVLER-------------KFMRVSEVEVGEVVNA-SIIK 600

Query: 980  IVKENYLVLSLPEYNHSIGYAS-VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 1038
            +   N + L L  +   + +A+  +D    + P+K+F  G  V A VM +       R++
Sbjct: 601  LGLPNAIFLQLQGHVDGVVFANHFADVKLTQ-PEKRFKPGLQVKARVMDV--DPNRNRIV 657

Query: 1039 LLLK---AISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095
            L LK     S+    +S +  +     VG +  A +  ++   L +    G    +   E
Sbjct: 658  LTLKKSLVKSDLPIVASMQDAR-----VGVVTNATVFRVQTNSLIVSLFGGLRALVPGRE 712

Query: 1096 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1155
            V++D  N V+   S F  G+ V  RI     + D +   L   SIK +     E  +KL 
Sbjct: 713  VSEDDFNDVK---SGFGEGKVVKMRI----TEVDYENQRLVG-SIKQAS---PEYLAKLN 761

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLT-----ISRHLKAQLFILDSAYEPSELQEFQRRF 1210
             +   V +G+ VTG V  V  E  +LT     +   L   +     +  P  L E     
Sbjct: 762  VDA--VEVGETVTGKVAAVHKEVVVLTLVPSGVRALLSLAVLAAMRSTTPEALLE---TL 816

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
               + + G V+S+    K + +V    ++  S K  + ++      + +G +V GR+ + 
Sbjct: 817  EEDQEIDGLVVSVKNPAKGIVIVADKVRE--SKKANEGASSTTSGQVKQGAVVQGRVIQK 874

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELK-----NICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
                   VV +G      +  T+L      NI +  P                 GQ ++C
Sbjct: 875  NDKYLDCVVALGTATRATLQMTDLADDFSANITLPSP-----------------GQTLQC 917

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
             ++ +    +      +S R S       N S  +  VD     +  I DL     ++G+
Sbjct: 918  YIVSLKPNGKSAV---ISTRPS-----RVNPSTSAQIVDP---EITSISDLIKGQKIRGF 966

Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
            VK +T+ G F+ + RKLDA+V +  L D +V   +  F +G+LV G V+ V   S  VE+
Sbjct: 967  VKAITNVGLFVNVGRKLDARVQVRELFDEFVRDWKTRFRVGQLVEGTVMDVNAHSNEVEL 1026

Query: 1446 TLKTSD-------SRTASQSEINN------LSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            +LK++         R A +++ ++      L++  VGD V G +K V  +G+F+ I+ TN
Sbjct: 1027 SLKSTPGSIKPRAEREAERAQAHDAKRPKRLTDFSVGDKVKGFVKNVIDFGVFVQIDGTN 1086

Query: 1493 L 1493
            +
Sbjct: 1087 V 1087



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 30/293 (10%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
            VK G++V G V +   +  +  V+A G  ++ T+    LAD       + S   PG    
Sbjct: 861  VKQGAVVQGRV-IQKNDKYLDCVVALGTATRATLQMTDLADDFSANITLPS---PGQTLQ 916

Query: 726  QLLV-LDNESSNLLLSAKYSLIN---SAQQLPSDASHIH---PNSVVHGYVCNIIETGCF 778
              +V L     + ++S + S +N   SAQ +  + + I        + G+V  I   G F
Sbjct: 917  CYIVSLKPNGKSAVISTRPSRVNPSTSAQIVDPEITSISDLIKGQKIRGFVKAITNVGLF 976

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            V    +L       +  D    D    + VGQ V   ++DVN+ +  + LSLK +  S  
Sbjct: 977  VNVGRKLDARVQVRELFDEFVRDWKTRFRVGQLVEGTVMDVNAHSNEVELSLKSTPGSIK 1036

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
              +  +            ++  H+    K +  F +G  ++G V    DFGV V   + +
Sbjct: 1037 PRAEREAE----------RAQAHDAKRPKRLTDFSVGDKVKGFVKNVIDFGVFVQI-DGT 1085

Query: 899  DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFID 944
            +V G    ++L+    +        G  ++A +L + + ++ +   LK  + D
Sbjct: 1086 NVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRINEEKKKISFGLKPSYFD 1138


>gi|225680123|gb|EEH18407.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb03]
          Length = 1175

 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 188/797 (23%), Positives = 350/797 (43%), Gaps = 98/797 (12%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            ++L ++ E   L L+ K SL+NS      + S I P +   G + +I   G  V+F G +
Sbjct: 24   RILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQSPGTIISIHPHGAIVQFYGEV 83

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
             GF P S+  +    D S+ + VGQ V  + L V++E  ++ +S K     ST     + 
Sbjct: 84   RGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAEVRKLVVSCKDP---STSTETYKN 140

Query: 846  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
             F                      E    G ++   V E +   +++  E    V     
Sbjct: 141  AF----------------------ENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNA 178

Query: 906  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF-IDRFREANSNRQAQKKKRKREA 964
             H   G + + GS + A I    K   LV LS++ V  + +     S +QA+++      
Sbjct: 179  EHVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAK 237

Query: 965  SKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIA 1023
             +DL     V   V+ I+ +   V  L      +    + D +  K P   +   Q++ +
Sbjct: 238  FEDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAK-PDFGYTLSQTISS 296

Query: 1024 TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS---------------SYD---VGS 1065
             V ++       R  L +K    ++   S  A+  S               S+D    G 
Sbjct: 297  FVHSIEDDRQ--RFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIKSFDDLTFGR 354

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII- 1122
            + +A+I  +K  ++ ++      GRI ++E+ D  D     +     FK  Q +  RII 
Sbjct: 355  ITKAKIVSVKETQINVQLADNIQGRIDVSEIFDGWDAIKDRKQPLRYFKPKQIIPVRIIG 414

Query: 1123 ---AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
               A+S+K  P   +S    ++ELS KPS L   +I    L     V IG    G+V  +
Sbjct: 415  IHDARSHKFLPISHRSGKYPVFELSAKPSSLESKDIE---LLSLDKVEIGSSWLGFVNNI 471

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
             ++   + I+ +++ +L I D + + S + + ++ F +G A+  HV  +N +K  L L  
Sbjct: 472  GDDCLWINITPNVRGRLRITDVSDDLSLVGDVKKNFPVGSAIKVHVTGVNVDKNRLDL-- 529

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                   S K  D  N    +   +G+I+ GR++K+      ++VQ+     G ++  ++
Sbjct: 530  -------SAKHGDPLNKRTISDFSKGEILLGRVTKVSDR--QVLVQLSDTTVGAINLIDM 580

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
             +          D  +  P + + + + ++  +L++    +    + LS+R S       
Sbjct: 581  AD----------DYTKVIP-ANFHKNEVLRVCILDVDVPNK---KILLSVRPS------- 619

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
                LS+ +      ++ I  L  N IV+G+V+ V + G F+ L  ++ A V +S+LSD 
Sbjct: 620  --RVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDS 677

Query: 1415 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1474
            Y++  + EF + +LV GR++ V+  + +++++LK S      ++ I  + +L+ G IV G
Sbjct: 678  YLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPI-TIRDLNRGQIVTG 736

Query: 1475 QIKRVESYGLFITIENT 1491
            +++ VE +G FI I+ T
Sbjct: 737  KVRSVEEFGAFIVIDGT 753



 Score =  110 bits (275), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 159/320 (49%), Gaps = 16/320 (5%)

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
           H+S+ ++  P +KF+ GA++  R+L V  + +++ +T KK+L+ S+      Y++     
Sbjct: 2   HLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGN 61

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            + G I  I  HG  V+FY  V+GF P SE+      +PS  + VGQVV    ++     
Sbjct: 62  QSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAEV 121

Query: 648 RRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R++ +S    P+  +E      + ++ G LVS  V   +   +++ +   G     +  E
Sbjct: 122 RKLVVS-CKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLV-ARLNAE 179

Query: 703 HLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDA 756
           H+ D    +H + + + I+ G +   L++L  +  + L+  S K SL  + Q  +LP+  
Sbjct: 180 HVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKF 238

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
             +   S V G+V NII  G FV FL  LTGF P+    D   A     Y + Q++ S +
Sbjct: 239 EDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFV 298

Query: 817 LDVNSETGRITLSLKQSCCS 836
             +  +  R TLS+K++  S
Sbjct: 299 HSIEDDRQRFTLSMKENQTS 318



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFT-HSDVKPGMV 501
           +++ +++  E+K++EG+ V  RIL     +      LK S    E   +  +SD+ PG  
Sbjct: 3   LSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQ 62

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
             G +I++   GAIVQF G V+   P+  MSE  I  P + F VG  +    L V ++
Sbjct: 63  SPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAE 120



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 127/356 (35%), Gaps = 95/356 (26%)

Query: 1201 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1260
            ++LQ  +R+F  G  V+  +LS+N EK+ LRL L+            + N     +    
Sbjct: 6    TKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKK----------SLLNSESPAWKEYS 55

Query: 1261 DIVGGRISKILSGVGGLVVQIGPH-----LYGRVH----FTELKNICVSDPLSGYDEGQF 1311
            DI+ G  S       G ++ I PH      YG V      +E+    + DP   +  GQ 
Sbjct: 56   DILPGNQSP------GTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQV 109

Query: 1312 --------------------DP----------LSGYDEGQFVKCKVLEISRTV-----RG 1336
                                DP                G  V C V E S+ V      G
Sbjct: 110  VNVHALTVHAEVRKLVVSCKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEG 169

Query: 1337 TFHV-ELSLRSSLDGMSSTNSSDLST-------------------------------DVD 1364
            +  V  L+     DG SS + S L+                                   
Sbjct: 170  SGLVARLNAEHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQAR 229

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1424
              G+   K EDL     V G+VKN+ + G F+   R L   +    + D +V  P+  + 
Sbjct: 230  QRGELPAKFEDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYT 289

Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLK---TSDSRTASQSEINNLSNLHVGDIVIGQIK 1477
            + + ++  V S+E   +R  +++K   TS  R +  +   + +N    + V G IK
Sbjct: 290  LSQTISSFVHSIEDDRQRFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIK 345



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 166/385 (43%), Gaps = 51/385 (13%)

Query: 225 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKPGLLLQG 282
           LSL+ V+ G     +V +I D    ++   P+  G L   +++++  +  DVK    +  
Sbjct: 453 LSLDKVEIGSSWLGFVNNIGDDCLWINI-TPNVRGRLRITDVSDDLSLVGDVKKNFPVGS 511

Query: 283 VVR------SIDRTR-KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
            ++      ++D+ R  +     DP          L   +I     G ++  RV  + + 
Sbjct: 512 AIKVHVTGVNVDKNRLDLSAKHGDP----------LNKRTISDFSKGEILLGRVTKVSDR 561

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
            V++       G +++  + + + T     ++++++ +   IL VD  ++ + L++ P  
Sbjct: 562 QVLVQLSDTTVGAINLIDMADDY-TKVIPANFHKNEVLRVCILDVDVPNKKILLSVRPSR 620

Query: 396 LHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDV 445
           + + + P         S +KV DI  +  V RV + GL + L    T     AYV ISD+
Sbjct: 621 VLSSSLPIEDPEIKSISQLKVNDIV-RGFVRRVANNGLFVTLGHEVT-----AYVRISDL 674

Query: 446 AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVV 502
           ++  ++  + +++    V  RI+            LK S  E       T  D+  G +V
Sbjct: 675 SDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPITIRDLNRGQIV 734

Query: 503 KGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            GKV +V+ FGA +   G   +  LC    M+E ++    K F+ G         VK+K 
Sbjct: 735 TGKVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGD-------IVKAKI 787

Query: 561 ITVTHKKTLVKSKLAILSSYAEATD 585
           + + H K  +   L + +SY + +D
Sbjct: 788 LKIDHDKERI--SLGLKASYFKESD 810



 Score = 43.5 bits (101), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 48/284 (16%)

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
            S +  G ++   +T++   ++ ++      G I++ ++ DD + V+    +NF   + + 
Sbjct: 543  SDFSKGEILLGRVTKVSDRQVLVQLSDTTVGAINLIDMADDYTKVIP---ANFHKNEVLR 599

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV-SIGQR-----VTGYVY 1172
              I+   + P+  K  L  LS++PS +    + S L  E+ ++ SI Q      V G+V 
Sbjct: 600  VCIL-DVDVPN--KKIL--LSVRPSRV----LSSSLPIEDPEIKSISQLKVNDIVRGFVR 650

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            +V N    +T+   + A + I D     S L+++Q  F + + V G ++ ++ E   L++
Sbjct: 651  RVANNGLFVTLGHEVTAYVRISD--LSDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQM 708

Query: 1233 -----VLRP-FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
                 VL P ++  I+ +            ++ G IV G++  +      +V+    +L 
Sbjct: 709  SLKESVLEPNYKAPITIRD-----------LNRGQIVTGKVRSVEEFGAFIVIDGTANLS 757

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            G  H TE+    V            D    +++G  VK K+L+I
Sbjct: 758  GLCHRTEMAEQKVE-----------DARKLFEKGDIVKAKILKI 790



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 136/319 (42%), Gaps = 29/319 (9%)

Query: 367 YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 426
           + +  +V+ARIL V+   R + LTL   LL++ +P          + S ++  ++  G +
Sbjct: 15  FREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPA-------WKEYSDILPGNQSPGTI 67

Query: 427 LDI-PSTPV-----STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LA 477
           + I P   +         ++ +S+++E  ++   + +  G  V V  L   H E    + 
Sbjct: 68  ISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTV-HAEVRKLVV 126

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEI 536
           +    +++ E       +++PG +V   V        +++  G G+ A     H+++ + 
Sbjct: 127 SCKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNAEHVTDGQS 186

Query: 537 VKPGKKF---KVGA---ELVFRVLGVKSKRITVTHKKTL--VKSKLAILSSYAEATDRLI 588
            K G      +VG    +LV   +    + I V++K +L   + +  + + + +  +   
Sbjct: 187 SKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGSK 246

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G++  I   G FV F  G+ GF P+  +  D   +P   Y + Q +   + S     +
Sbjct: 247 VTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFVHSIEDDRQ 306

Query: 649 RINLSFMMKPT---RVSED 664
           R  LS     T   RVS++
Sbjct: 307 RFTLSMKENQTSKQRVSDN 325


>gi|118374077|ref|XP_001020230.1| S1 RNA binding domain containing protein [Tetrahymena thermophila]
 gi|89301997|gb|EAR99985.1| S1 RNA binding domain containing protein [Tetrahymena thermophila
            SB210]
          Length = 2060

 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 314/1450 (21%), Positives = 581/1450 (40%), Gaps = 238/1450 (16%)

Query: 125  KITLKNISAGMKLWGVVAEV--NEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL 182
            K+ +   S G ++   V+E   N + +V+ L    +     ADA +        + E+N 
Sbjct: 144  KVPVLRYSPGTQVLTAVSEYGSNGQYMVVNLSRNKKAFVTVADATEA-------SKEEND 196

Query: 183  LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
            L  I+  G+ L+  IV         I +  + +S++ S +  GL +  +   M+L   V 
Sbjct: 197  L-RIYDQGEYLIGEIV-------PSIKEGNMNVSIKTSKVNSGLQISDIHLNMILPGLVS 248

Query: 242  SIEDHGYILHF-GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD- 299
            S EDHG  + F G   + GFL ++    N+  D++ G +    V   +  +++V+LS   
Sbjct: 249  SKEDHGAKIEFNGGEKYFGFLSKD--EANNFEDLEEGRVYMFRVIKKEEKKRLVHLSQKV 306

Query: 300  PDTVSKCVTK---DLK-GISIDLLV-PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
             D   K V     D++ G  +  L  PG +V+  +  +L NG+++ FL  F G +   HL
Sbjct: 307  SDQEGKFVVSGEVDIEDGADLHHLAKPGNLVNAVILKVLNNGLIVRFLKQFIGFIFEDHL 366

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLT-------LNPYLLHNRAPPSHVKV 407
                        Y + +K+ ARI+  D   + + L+       L PY        + +  
Sbjct: 367  DKEISA------YKEKEKLLARIIASDFDQKQINLSVKKAHIDLKPY------EDNSIVT 414

Query: 408  GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR--V 465
            GD+     VV      G     P+      +++  + + +EE+       KEG      +
Sbjct: 415  GDVLTDGFVVTKALYGGSYFVKPNNSNIQQSFLHKAHIEKEEL-------KEGQTYTDAI 467

Query: 466  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            +I    + E +     K    +  V   +D++PGM +  K+  +   GA  Q+   V   
Sbjct: 468  KIKEINYFEQIPIITAKGELVK-RVTNWNDLRPGMQLSAKIDKIIQ-GANNQYKLKVAVN 525

Query: 526  CPLPHMSEF----EIVKPG---KKFKVGAELVFRVLGVK--SKRITVTHKKTLVKS---K 573
              +  + +F    +I K G   K  K G ++  R++ V    K +  T K  L+     K
Sbjct: 526  DKMIGLVDFYNTADIPKAGPVPKNLKEGRKIKVRIMSVNPSDKTLRFTIKPALLNEEDDK 585

Query: 574  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
            +    S A+  D  +  G+I++  ++G  V+F+  V G     ++    G      Y VG
Sbjct: 586  ILKNISNAQVGDSYL--GFISRKTEYGYIVQFFGDVIGLLTFKDIEEING-HSRDEYKVG 642

Query: 634  QVVKCRIMSSIPASRRINLSF------MMKPTRVSE--------------DDLVKLGSLV 673
            QV++  I        +I LS        ++  ++S+              +++  +   V
Sbjct: 643  QVIRVYIAFVNAEQGKIGLSISEKGVSQLQKQKLSQNTSRKTLFEFQAINENVENISHNV 702

Query: 674  SGVVDVVTPNAVVVYVIAKGYSK---GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL 730
              V++ +  N   +  +   Y K     I  EHL+D   H   +    +        + +
Sbjct: 703  GDVLEYIVENNQALQDVLTLYHKEHRAIIAIEHLSDFRNHYQSLNQYYRTLPNKGNQVTI 762

Query: 731  DNE------SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              +      + N+++SAK S++++    P+    +  N++   Y+      G  V+F  R
Sbjct: 763  KCKIIHIMPNKNVIVSAKPSILSNMN--PNSLESVKANNIYTAYIDRGARKGVLVKFNER 820

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-------KQSCCSS 837
            +  F      +  +  D    +    SV   +   N E  +IT SL       KQ+  +S
Sbjct: 821  VKFF------IGKENLDEHAAFQTYDSVL--VFVKNVEGDKITASLQNEAVFKKQAHINS 872

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                F+ E+F  E    ML      G   K    + +G+ +   +    +FG+VV   + 
Sbjct: 873  QFNRFI-EYFNDE---YMLNKKFTQGEHKKTWNKYRVGNYVNTTIELVKEFGIVVKVND- 927

Query: 898  SDVYGFITHHQLAG--ATVESGSVIQAAILDVAKAERLVDL---------SLKTVF---- 942
            S + G I +  +A   +T+  G  +   I D+   +++VD+          L T+     
Sbjct: 928  SPLTGLIMNEHVANTRSTLAEGQTLLCRITDIDFEKQMVDVIPSPIDDNTKLTTLLQSNN 987

Query: 943  --IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
              +D+F E  +N                   +T++A V   K  Y++  + +      Y 
Sbjct: 988  FNLDKFLELENN-------------------ETIDATVICQKGEYIICQITKAPKVFCYV 1028

Query: 1001 SVSDYNT---------QKFPQKQFLNGQSVIATVMALPSSSTAGR---LLLLLKAISETE 1048
            +++++N          QK    + +N + +  T     S++ A R   + L  + +++  
Sbjct: 1029 NMTNFNNLEHEEMLFGQKIKNLKCVNKEILQKTHKNAQSTNMALRSNYIPLFEQQVNQQN 1088

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
              ++   K   +   G  V  ++ +     + ++     +G++H ++  D +       F
Sbjct: 1089 KGTAIEEKSGITLKPGIKVVGKVLKTVGFNVFVQLKGKLYGKLHKSQCQDAEQ------F 1142

Query: 1109 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK-----PSMLTVSEIGSKLLFEECDVSI 1163
            ++FK GQ +  +I+    K D  KS   +L+ K      ++L  SE+ S  +    +  +
Sbjct: 1143 ASFKEGQQIDCKILYL--KKD--KSLQIDLTTKQAHMNSTLLEESEVLSMSIDNFRENCV 1198

Query: 1164 GQRVTGYVYKVDNE-----WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
            GQ   G V   D       +  L+   H     F LD+     +L + ++++  G  V  
Sbjct: 1199 GQIHRGVVKSTDPSSIHPVYIELSNYHHGYFSAFDLDA----EDLNQIKKKYKKGSIVEC 1254

Query: 1219 HVLSIN--KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
             ++S++  KE  L  + L P        + D S +   + I  GD+V  +I K      G
Sbjct: 1255 RIVSLSSSKENDLKHIQLSP-----KLLSADESAEKKDS-IKVGDLVTAKIVK--KNNNG 1306

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
              VQI  +L+G V  TE   IC        DE   +  S      FVK +V+        
Sbjct: 1307 FRVQISDNLFGNVDITE---IC--------DEWIANASSSIQINSFVKARVI-----AEE 1350

Query: 1337 TFHVELSLRSSLDGM-----------SSTNSSDLSTDVDTPGKHLEKIEDLSPN-----M 1380
              H  LSLRSS+              ++ N     +D +  G    +I  L P      M
Sbjct: 1351 GDHKYLSLRSSVTNEQNWKNSLGPNGTTINYKKYFSDSEKIGDLRNRIIKLGPGSIKVGM 1410

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +  GY+     KGCFI + +    +  L+ LSD ++  P+  F   KLV GR++ ++   
Sbjct: 1411 VFVGYINQTNDKGCFIKIGQDTVVRASLNELSDEHIAKPQTHFYQNKLVVGRIIQIKEDG 1470

Query: 1441 KRVEVTLKTS 1450
            K +E +L+ S
Sbjct: 1471 K-IEASLRES 1479


>gi|358056290|dbj|GAA97773.1| hypothetical protein E5Q_04452 [Mixia osmundae IAM 14324]
          Length = 1414

 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 221/856 (25%), Positives = 352/856 (41%), Gaps = 102/856 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG SLTQ E      E  AE +  E  L  ++ K K+ T+               D
Sbjct: 37  FPRGGGTSLTQMEVKTAKREAIAELDRDEE-LFARDSKAKRSTDGTDEGKHKKRRRKEKD 95

Query: 114 GISGKLPRYANKITL-------KNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
                 P  A + T+       K  + G KL  +V  V+  +L++ LP  L G   L   
Sbjct: 96  AAKAVKPDVAKQDTIRVEHLNYKRCTPGTKLLCLVVSVHALELIVSLPNELSGHIPLVNI 155

Query: 164 ADALDPIL-----DNEIEA----NEDNL--LPTIFHVGQ--LVSCIVLQLDD-------- 202
           +  L   L     D+E E+    +ED+   L  ++  GQ  + S +  +  D        
Sbjct: 156 SSGLTAQLASGHPDDESESTDEQDEDDSPDLTQMYEPGQYLIASVVACRSSDVARNTLDP 215

Query: 203 ----DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL---- 254
               D+     R++ LSL    +   L+   + +G++L   VKS+ED+GY+L   L    
Sbjct: 216 SRRGDEAYRTSRRLELSLDPKPINDDLARSDLTDGLLLPVSVKSVEDNGYVLDLRLKDEM 275

Query: 255 PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
            SF  F       E +    K   L+ G V     T +++ L+S+  T +  +  D   I
Sbjct: 276 TSFVKF-------EEAQTSRK---LIGGQVI----TARLIKLASNGRTCTLAI--DATRI 319

Query: 315 SIDL---------LVPGMMVSTRVQSILE-NGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
                        L+PG  V+  V +++   G+ + FL +F GT+D  HL          
Sbjct: 320 RAAALATAPTLHGLLPGNQVNAIVSAVIPGRGLNVKFLGFFDGTIDHTHLV-------IG 372

Query: 365 NDYNQHKKVNARILFVD-PT---SRAVGLTLNPYLLHNRAPP--------SHVKVGDIYD 412
            +Y +  K+ AR+L+   PT   +R   L+  P++L   APP          V +G   D
Sbjct: 373 KEYKEGNKIKARLLWSSAPTLDAARTFALSALPHVL-KLAPPLLGDTLLKEAVPIGTFVD 431

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILG 469
             KV R +   GL            A+V IS V++E +  L  K   Y  G+  R R++G
Sbjct: 432 SVKVNRTESEHGLACTARLGANECAAFVHISRVSDEHLGTLSAKSGPYCPGTTHRGRVIG 491

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
              L+G     L+ S         SDV  G  VK  +  + S    V   G V A+    
Sbjct: 492 LALLDGALQISLQPSVLAQRFLRVSDVVVGEAVKATIKRITSKAMFVSVDGNVDAVVWPL 551

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
           H S+ ++  P K+FK+G  +  R+     +S +I VT KK+L+ S L +  S A+   + 
Sbjct: 552 HYSDIKLKHPEKRFKIGDVVKGRIFAADSESSKIVVTLKKSLLASDLPVPQSLADVKPQQ 611

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
                ++KI +    V  + G +   P SE G       +++Y  GQ ++ RIM    ++
Sbjct: 612 AYDAVLSKIMEKALLVDLFGGARAIIPISEAGQGFVDNLAALYKEGQRLQVRIMHVDTSA 671

Query: 648 RRINLSFMMKPTR-VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            RI  S   +    V+  + +K+G     V+  +  N  +V  IA   ++G +     A 
Sbjct: 672 GRITASLRERDLDGVAALEGLKVGQKTEAVIAALH-NDNIVLEIAPSKARGLLSYTAHAR 730

Query: 707 HLEHAT-VMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQLPSDASHIHPNS 763
            L  AT  +K  I  G     L V+   +     +LS+  +  NS+    SD       +
Sbjct: 731 QLGVATDELKQRIAVGQLLKDLTVVSKNTQKGIAILSSGSTSTNSSANGISDMLQFESVA 790

Query: 764 VVHGYVCNIIET---GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
           V   Y   II +   G  V+    L   A  +  +D   A L      G  V  NI+  +
Sbjct: 791 VGETYAGKIIGSAPQGLHVQLSRALRALAHWTDVLDDFDAALPAP---GTVVSCNIVGKD 847

Query: 821 SETGRITLSLKQSCCS 836
               R+ +SL+ S  +
Sbjct: 848 EAARRVDVSLRPSVMA 863



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 217/498 (43%), Gaps = 77/498 (15%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AISETETSSSKRAKKKSSYDVG 1064
            K P+K+F  G  V   + A  S S+  ++++ LK    A       S    K + +YD  
Sbjct: 559  KHPEKRFKIGDVVKGRIFAADSESS--KIVVTLKKSLLASDLPVPQSLADVKPQQAYDA- 615

Query: 1065 SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 1124
              V ++I E K L + L     F G   I  +++     V+NL + +K GQ +  RI+  
Sbjct: 616  --VLSKIME-KALLVDL-----FGGARAIIPISEAGQGFVDNLAALYKEGQRLQVRIMHV 667

Query: 1125 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                    + L E  +          G   L     + +GQ+    +  + N+  +L I+
Sbjct: 668  DTSAGRITASLRERDLD---------GVAALE---GLKVGQKTEAVIAALHNDNIVLEIA 715

Query: 1185 RHLKAQLFILDSAYEPS---ELQEFQRRFHIGKAVTG-HVLSINKEKKLLRLVLRPFQ-- 1238
               KA+  +  +A+         E ++R  +G+ +    V+S N +K +  L        
Sbjct: 716  PS-KARGLLSYTAHARQLGVATDELKQRIAVGQLLKDLTVVSKNTQKGIAILSSGSTSTN 774

Query: 1239 ---DGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
               +GISD         M  F  +  G+   G+I  I S   GL VQ+   L    H+T 
Sbjct: 775  SSANGISD---------MLQFESVAVGETYAGKI--IGSAPQGLHVQLSRALRALAHWT- 822

Query: 1294 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353
                   D L  +D     P      G  V C ++      R    V++SLR S+   ++
Sbjct: 823  -------DVLDDFDAALPAP------GTVVSCNIVGKDEAAR---RVDVSLRPSVMADNA 866

Query: 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1413
              S      +  P   +  I++L     ++G+V NV   G F+ + R L A+V +  L D
Sbjct: 867  EGS------ILDP--EIISIDELRIGQKIRGFVVNVADSGLFVSVGRSLTARVQIRELFD 918

Query: 1414 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1473
             YV   +  F +G+LV+G +L ++P   ++E++L++   RTA++S+ N L++  VG I  
Sbjct: 919  EYVREWKPRFSVGQLVSGSILKLDPERNQIELSLRS--ERTAAKSDANALASYQVGQIAS 976

Query: 1474 GQIKRVESYGLFITIENT 1491
              IK +E YG F+ I +T
Sbjct: 977  CVIKTIERYGAFLRITDT 994


>gi|357616535|gb|EHJ70248.1| programmed cell death protein 11 [Danaus plexippus]
          Length = 1195

 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 262/568 (46%), Gaps = 66/568 (11%)

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANEDNL--LPT 185
           +  G+ L G V    E  +++ LP  + G+  A   +DA + IL+  +    D +  LP 
Sbjct: 75  VKEGLLLLGRVRRALETKILVSLPCRMSGVVMACHISDAFNNILEAYVNDKVDQVRELPQ 134

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE----TVQEGMVLTAYVK 241
           +F +GQ V+  VL+  D+           SL L+++ + ++ +     + +G ++ A V 
Sbjct: 135 MFRLGQYVAVKVLEASDN-----------SLTLTMMPQDINSDRKATDLHKGALIQAAVT 183

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
           SIEDHGY++  G+P+   FL ++    NS +++  G+L    ++S+     VV LSS+  
Sbjct: 184 SIEDHGYVMDIGIPNTRAFLAKD--TANSDMELDIGMLTWVTIKSLSADSNVVTLSSELG 241

Query: 302 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV---MLSFLTYFTGTVDIFHLQNTF 358
            + +   ++  G+    + PG  V   V   L+NG+   +L+    +     I  ++   
Sbjct: 242 ALQRSFQRN-PGV----IYPGTAVDFTVHKALDNGIEGHILNNQLAYIQRHQIDTVKGKK 296

Query: 359 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV---GDIYDQSK 415
           P           +K+ AR+L+  P  +   LT+      ++   +  ++   GD+ +++K
Sbjct: 297 PALG--------QKIRARLLYSVPPQQTPFLTMREIFDSSKTNLNEEQIHQDGDVIEEAK 348

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           V++   G  + L +        +     D  + +   L K Y  GS  RVR+L +     
Sbjct: 349 VLK-SWGRTVFLRLSDRSTGFLSLRRGHDFNDHD--DLAKSYPIGSTHRVRVLCY----N 401

Query: 476 LATGILKASAFEGLV----FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 531
           L+  +   S    L+    F  S +  G +V G V  V      V     +    P  HM
Sbjct: 402 LSDYVYSVSDDPALLRQKYFNISQLSVGELVSGTVTEVADQHLRVAV-DRISGYVPRAHM 460

Query: 532 SEFEIV----KP-----GKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSY 580
           +E  +     KP      KK+KVG E+  RVL V   +  + +T K +L+   L +L  Y
Sbjct: 461 TETGVFIDPKKPRNSNVSKKYKVGQEVQARVLVVDETKNSVVLTLKPSLLAEDLPLLMDY 520

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
           +EA    +  G I+ I KH   V F+N V  + P   +G  PG + +  +H GQ+VKC I
Sbjct: 521 SEAHVGKMYTGVISHI-KHYLLVSFFNNVVAYVPSRLVGAQPG-DLADAFHTGQIVKCTI 578

Query: 641 MSSIPASRRINLSFMMKPTRVSEDDLVK 668
           MS  P +++++ S +  P + +++++ K
Sbjct: 579 MSVKPEAKKMSGSLVDAPFQDADNEVKK 606



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 29/194 (14%)

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFG--IGFHGRIHITEVN---DDKSNVVENLFSNFKI 1113
            S   VG LV   +TE+    LR+      G+  R H+TE     D K     N+   +K+
Sbjct: 424  SQLSVGELVSGTVTEVADQHLRVAVDRISGYVPRAHMTETGVFIDPKKPRNSNVSKKYKV 483

Query: 1114 GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1173
            GQ V AR++      + K S +  L++KPS+L        LL +  +  +G+  TG +  
Sbjct: 484  GQEVQARVLVVD---ETKNSVV--LTLKPSLLAED---LPLLMDYSEAHVGKMYTGVISH 535

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSEL-----QEFQRRFHIGKAVTGHVLSINKEKK 1228
                     I  +L    F    AY PS L      +    FH G+ V   ++S+  E K
Sbjct: 536  ---------IKHYLLVSFFNNVVAYVPSRLVGAQPGDLADAFHTGQIVKCTIMSVKPEAK 586

Query: 1229 LL--RLVLRPFQDG 1240
             +   LV  PFQD 
Sbjct: 587  KMSGSLVDAPFQDA 600



 Score = 47.0 bits (110), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFD 725
           +G LVSG V  V    + V V       G +P  H+ +    ++      S +   Y+  
Sbjct: 428 VGELVSGTVTEVADQHLRVAV---DRISGYVPRAHMTETGVFIDPKKPRNSNVSKKYKVG 484

Query: 726 Q-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
           Q     +LV+D   ++++L+ K SL+     L  D S  H   +  G + +I +    V 
Sbjct: 485 QEVQARVLVVDETKNSVVLTLKPSLLAEDLPLLMDYSEAHVGKMYTGVISHI-KHYLLVS 543

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           F   +  + P S+ V  Q  DL+  ++ GQ V+  I+ V  E  +++ SL
Sbjct: 544 FFNNVVAYVP-SRLVGAQPGDLADAFHTGQIVKCTIMSVKPEAKKMSGSL 592


>gi|443896583|dbj|GAC73927.1| rRNA processing protein Rrp5 [Pseudozyma antarctica T-34]
          Length = 1563

 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 253/560 (45%), Gaps = 53/560 (9%)

Query: 183 LPTIFHVGQLVSCIVLQL------------DDDKKEIGKRKIWLSLRLSLLYKGLSLETV 230
           L  +FHVGQ +   V+Q+            +  + E   R++ LSL   L+  G+S+  +
Sbjct: 239 LRDLFHVGQWLVASVVQVRGGDVARGRPTREGGEYEKESRRVELSLAPQLVNAGVSVSDL 298

Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGF--------LPRNNLAENSGIDVKPGLLLQG 282
             G  L+A + S+EDHGYIL  G+  F GF        LP N  A  +G  ++ G ++  
Sbjct: 299 DAGATLSATISSVEDHGYILDSGIGEFRGFVSFAEAAKLPENFHAGKNGKSLQVGSVVFA 358

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            +  +   ++    + DP  VS    K +   SI  ++PG +    V + L  G+ +   
Sbjct: 359 KITKVPENKRSFEATLDPKAVSTTPIKHVP--SITAVLPGTLTKVLVTAALPTGLNVKLF 416

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 389
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R  GL
Sbjct: 417 GMFDATIDRFHLPELPEGKDIPDVYKEGSKHVARVLWDLLSPPSAALQGENPEHERKFGL 476

Query: 390 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 442
           +L P +L  +AP +       H        +  VV+     GL++ +  T +    +V I
Sbjct: 477 SLAPQVLSLQAPVAKDQQLLQHAYPIGTPIKVTVVQTVTDWGLIVSVKGTDLR--GFVHI 534

Query: 443 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           S V+++ V  L      + +G+  + R++G    +      LKAS  E      S+V+ G
Sbjct: 535 SQVSDDHVVALPPSSGPFCKGTEHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 594

Query: 500 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
            VV   +I +    AI +Q  G V  +    H ++ ++ +P K+FK G ++  RVL V  
Sbjct: 595 EVVNATIIKLGLPNAIFLQLQGHVDGVVFANHFADVKLTQPEKRFKPGLQVKARVLDVDP 654

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
              RI +T KK+LVKS L I+ S  +A   ++TH  + +++ +   V  + G++   P  
Sbjct: 655 SRNRIVLTCKKSLVKSDLPIVGSMQDARVGVVTHATVFRVQVNSIIVNLFGGLKALIPGR 714

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE--DDLVKLGSLV 673
           E       +  S +  G+VVK RI      ++R+  S     P  +++   D V++G  V
Sbjct: 715 EASEASFEDVKSSFTEGKVVKMRITEVDYENQRLVGSIKQASPEFLAKLNVDAVEVGEKV 774

Query: 674 SGVVDVVTPNAVVVYVIAKG 693
            G V  V    VV+ ++  G
Sbjct: 775 VGKVAAVHKEVVVLSLVPSG 794



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 150/666 (22%), Positives = 286/666 (42%), Gaps = 117/666 (17%)

Query: 871  GFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSV 919
             + IG+ I+  V ++  D+G++VS +  +D+ GF+   Q++   V +          G+ 
Sbjct: 499  AYPIGTPIKVTVVQTVTDWGLIVSVK-GTDLRGFVHISQVSDDHVVALPPSSGPFCKGTE 557

Query: 920  IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
             +A ++  +  +R + LSLK   ++R           K  R  E      V+ T   I++
Sbjct: 558  HKARVVGHSPTDRTLQLSLKASVLER-----------KFMRVSEVEVGEVVNAT---IIK 603

Query: 980  IVKENYLVLSLPEYNHSIGYAS-VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 1038
            +   N + L L  +   + +A+  +D    + P+K+F  G  V A V+ +  S    R++
Sbjct: 604  LGLPNAIFLQLQGHVDGVVFANHFADVKLTQ-PEKRFKPGLQVKARVLDVDPSRN--RIV 660

Query: 1039 LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
            L  K                      SLV++++  +  ++   + G+  H  +   +VN 
Sbjct: 661  LTCKK---------------------SLVKSDLPIVGSMQ-DARVGVVTHATVFRVQVN- 697

Query: 1099 DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL--- 1155
               +++ NLF   K    +  R  ++++  D+K SF     +K  +  V     +L+   
Sbjct: 698  ---SIIVNLFGGLK--ALIPGREASEASFEDVKSSFTEGKVVKMRITEVDYENQRLVGSI 752

Query: 1156 ----------FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILD--SAYEPSEL 1203
                           V +G++V G V  V  E  +L++       L  L   +A   +  
Sbjct: 753  KQASPEFLAKLNVDAVEVGEKVVGKVAAVHKEVVVLSLVPSGVRALLSLSVLAAMRGTSA 812

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGD 1261
            +E        + +   V+S+   +K L +V    +   S KT   +N ++ T   + +G 
Sbjct: 813  EELLESLEEDQEIDNLVVSVKNPEKGLVIVADKVR---SSKTARDANGSVSTSAQVEQGA 869

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1321
            +V GR+ +        VV +G      +H T+L +    D  SG        +S    G 
Sbjct: 870  VVKGRVIQKNEKYLDCVVALGTATRATLHITDLAD----DFASG--------VSLPSPGD 917

Query: 1322 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS-TDVDTPGKHLEKIEDLSPNM 1380
             V C V+ +    +              G+ ST +S +S ++ +     +  I +L+   
Sbjct: 918  NVDCFVVSLKANGKS-------------GVVSTRASRISPSNAEVTDVEITAITELAKGQ 964

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
             V+G+VK +T+ G F+ L RKLDA+V +  L D +V   +K F +G++V+G ++ V    
Sbjct: 965  KVRGFVKAITNVGVFVSLGRKLDARVQVRELFDEFVRDWKKRFTVGQVVSGTIMDVNANQ 1024

Query: 1441 KRVEVTLKTSD-------SRTASQSEIN------NLSNLHVGDIVIGQIKRVESYGLFIT 1487
              +E++LK++         R   ++E +       L++   GD V G IK +  +G+F+ 
Sbjct: 1025 NEIEMSLKSTPGSIKPRAERAQERAEADGKKRPKRLTDFKAGDKVKGFIKNIIDFGVFVQ 1084

Query: 1488 IENTNL 1493
            IE TN+
Sbjct: 1085 IEGTNV 1090



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 141/664 (21%), Positives = 249/664 (37%), Gaps = 77/664 (11%)

Query: 327  TRVQSILENGVMLSFL-TYFTGTVDIFHLQNTF-----PTTNWKNDYNQHKKVNARILFV 380
            T VQ++ + G+++S   T   G V I  + +       P++       +HK   AR++  
Sbjct: 509  TVVQTVTDWGLIVSVKGTDLRGFVHISQVSDDHVVALPPSSGPFCKGTEHK---ARVVGH 565

Query: 381  DPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
             PT R + L+L   +L  +              + ++++     + L +          V
Sbjct: 566  SPTDRTLQLSLKASVLERKFMRVSEVEVGEVVNATIIKLGLPNAIFLQLQG---HVDGVV 622

Query: 441  TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVK 497
              +  A+ ++ + EK++K G  V+ R+L             K S  +    +V +  D +
Sbjct: 623  FANHFADVKLTQPEKRFKPGLQVKARVLDVDPSRNRIVLTCKKSLVKSDLPIVGSMQDAR 682

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIVKPGKKFKVGAELVFRVLG 555
             G+V    V  V     IV   GG+KAL P    SE  FE VK    F  G  +  R+  
Sbjct: 683  VGVVTHATVFRVQVNSIIVNLFGGLKALIPGREASEASFEDVK--SSFTEGKVVKMRITE 740

Query: 556  V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY-NGVQGF 612
            V  +++R+  + K+   +    +     E  ++++  G +  + K    +    +GV+  
Sbjct: 741  VDYENQRLVGSIKQASPEFLAKLNVDAVEVGEKVV--GKVAAVHKEVVVLSLVPSGVRAL 798

Query: 613  APRSELGLDPGCEPSSMYHV-------------------GQVVKCRIMSSIPASRRINLS 653
               S L    G     +                      G V+    + S   +R  N S
Sbjct: 799  LSLSVLAAMRGTSAEELLESLEEDQEIDNLVVSVKNPEKGLVIVADKVRSSKTARDANGS 858

Query: 654  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
                   VS    V+ G++V G V       +   V     ++ T+    LAD       
Sbjct: 859  -------VSTSAQVEQGAVVKGRVIQKNEKYLDCVVALGTATRATLHITDLADDFASGVS 911

Query: 714  MKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHG 767
            + S   PG   D  +V L     + ++S + S I+ +    +D      + +     V G
Sbjct: 912  LPS---PGDNVDCFVVSLKANGKSGVVSTRASRISPSNAEVTDVEITAITELAKGQKVRG 968

Query: 768  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            +V  I   G FV    +L       +  D    D  K + VGQ V   I+DVN+    I 
Sbjct: 969  FVKAITNVGVFVSLGRKLDARVQVRELFDEFVRDWKKRFTVGQVVSGTIMDVNANQNEIE 1028

Query: 828  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 887
            +SLK     ST  S        +E+     +        K +  F  G  ++G +    D
Sbjct: 1029 MSLK-----STPGSIKPRAERAQER-----AEADGKKRPKRLTDFKAGDKVKGFIKNIID 1078

Query: 888  FGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKT 940
            FGV V   E ++V G    ++L+    +        G  ++A +L + + +R +   LK 
Sbjct: 1079 FGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRINEEKRKISFGLKP 1137

Query: 941  VFID 944
             + D
Sbjct: 1138 SYFD 1141


>gi|256090782|ref|XP_002581360.1| programmed cell death protein [Schistosoma mansoni]
          Length = 769

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 176/769 (22%), Positives = 320/769 (41%), Gaps = 103/769 (13%)

Query: 139 GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-----DNL--LPTIFHVGQ 191
           GV+  V +  L + LP G  G     D  D   +   E+ E     D+L  L  +F VGQ
Sbjct: 9   GVIKSVQKLYLEVQLPHGFLGRVNIYDVSDKYTELLRESAESGIIQDDLVELSDMFKVGQ 68

Query: 192 LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
            V C + + D+ +     ++  +SL   ++ K +  + V+  MV    V S+EDHGYI+ 
Sbjct: 69  TVRCFIKEADNSRGSGSTKRYIVSLNPKMVNKAVISKNVKPHMVFVGSVVSVEDHGYIVD 128

Query: 252 FGLPSFTGFLPRN----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 307
            G+     FLP++    NL   S I   P +    V  S   +++V+ +++  D+    +
Sbjct: 129 PGVARMNCFLPKDQVDVNLDIGSLIPFTPHVSDPLVNSS---SKRVLKVTTRLDSTLSVL 185

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
           + D + ++ D ++PG  +   +   + + ++  F  YF       ++ N       K DY
Sbjct: 186 SPDSR-VNFDCMLPGTCLHASIVKKVTSTLVAEFSEYFVSISRTHYIGN-------KEDY 237

Query: 368 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRV 419
               KV   I+ VDP+++ +  +L P+L+ N  P         S   VG  +  S V RV
Sbjct: 238 QIGAKVFVCIILVDPSTKQLTGSLLPHLV-NPIPSVLNISEMLSKCPVGTRFSGSLVERV 296

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 479
           ++   +L+ +P T     A + I     +      K    GS +  RI     LE +A  
Sbjct: 297 NKR-AVLVKLPKTN-GLKAVIRIPKTGTKNNENF-KSLVVGSKLTCRITDHDFLENVAVA 353

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
                       +  ++KPG  V   V      G +V   G +  L P  H ++  +   
Sbjct: 354 TTNKKLLSLPFLSLHELKPGNKVSATVKRYSKTGIVVHLEGRIHGLIPYLHTTDINLKDH 413

Query: 540 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT-------DRLITH 590
            +KFK G ++   VL +   + ++ +T K  L+ ++L I  S+   +       ++L+  
Sbjct: 414 REKFKAGEKVSCLVLQLDECANKLILTAKPGLLNAELPIFGSHEMYSALKNGNNNQLLIV 473

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR- 649
           G+I K+ + G  +   + ++G+ PR E GL       + ++ GQV+K +    I  S   
Sbjct: 474 GFIVKVSEKGLLISGLDNIRGWIPRRETGLADEDILQTNFYRGQVLKMKFKREINISSEN 533

Query: 650 --------------INLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
                         ++L F  K T+  +    + V++G L    V+ V    + + +  K
Sbjct: 534 EVEKDSRNIRSKYMLSLKFHSKKTKNMQSIFLNSVQIGQLFRATVNQVQDTGISLNLYDK 593

Query: 693 GYSKGTIPT--------EHLADHLEHATVMKSV---IKPGYEFD------QLLVLDNESS 735
             +    P           L+D+  +  ++      IKPG   D       ++V+D    
Sbjct: 594 NINDTVTPVLGTGFLSFSQLSDYESNQQLLSRYIKNIKPGSTLDWNHSARNVVVIDKGKQ 653

Query: 736 NLLLSAKYSLINSAQQLP-----------SDASHIHP-----------NSVVHGYVCNII 773
            ++LSA+ +L+ +A  L            S+AS   P            S    +V +  
Sbjct: 654 TVILSARPTLVQAASDLKTNINIDVDMVDSEASDKRPGFLRTFDELQVGSQWFAWVSHHK 713

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILDV 819
           + G FV F   + G AP+    D +     + ++ + VG +V + I++V
Sbjct: 714 DYGVFVHFPAGIYGLAPKHLLSDFRTQSNTNWTELFPVGATVITKIVEV 762


>gi|393909953|gb|EJD75660.1| S1 RNA binding domain-containing protein [Loa loa]
          Length = 1790

 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 231/962 (24%), Positives = 414/962 (43%), Gaps = 123/962 (12%)

Query: 233  GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRS 286
            G+VL   V+S+ED G I++ GL S    GFL   +L     + S I+ +P LL      S
Sbjct: 152  GLVLNGVVESVEDKGVIINLGLQSVELKGFLAEKHLPPTFQKESLIEGQPLLLRIQNENS 211

Query: 287  IDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
             ++  +VV LS+ P+   +C+    +K + ++ L+PG ++         +GV ++     
Sbjct: 212  SNKKSRVVSLSAVPEM--ECLDDIAVKNLKLNDLMPGTLLLVNPLQPTASGVYVNIGNDI 269

Query: 346  TGTVDIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NR 399
             G V+  HL        ++ND +   K     ++F    S  + L  +P ++       R
Sbjct: 270  KGYVNRQHL-----PPRYRNDSFKCLKSFKTIVMFCQQNSNLLALNGHPDIIAASKFAKR 324

Query: 400  APPSHVKVGDIYDQSKVVRVDRG----LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
                +V  GDI  + KV  V++       L+L          A+   +++ E+ V     
Sbjct: 325  TNFENVHTGDII-ECKVSNVNKNGDVNFDLVLHGDERNSLVAAFARKTEL-EDHV----- 377

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
            +YK+G+  + R+L F+ +E +     +       +    D  PGM V  KV +V   G  
Sbjct: 378  EYKKGTIHQTRVLSFKMVERILIVATRKDILAQKMVCVKDAVPGMKVIAKVESVLPKGLF 437

Query: 516  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSK 573
            V+    +    P  H+S+  I +  K F VG EL  R+L V    +R+ +T+K++L  +K
Sbjct: 438  VKIYNSIPGFIPKIHLSDKLITRIDKHFAVGDELTCRILTVNEAKERLILTNKQSLTTNK 497

Query: 574  LAILSSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSM 629
              ++ SYAE T   IT G+I  + +H   G  + FY G +GF  P+    L       + 
Sbjct: 498  DTVIKSYAEVTTNAITTGYI--VSQHPSGGLIIGFYGGTRGFMFPKETERL------GTN 549

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV- 677
              VG  V+ R++S  P   R+ ++              +P  +   + V   ++V  ++ 
Sbjct: 550  IKVGLTVRVRVVSVDPQRGRMLVAVANAANDGTEIAKAQPFLIDGGNSVSFSAVVMNILS 609

Query: 678  --DVVTPNAVVVYVIAKGYS-----KGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLL 728
              +   PN ++   +  G       K  IP E L+D L+   A++ +S I  G    ++ 
Sbjct: 610  NDNKSKPNEILNVTVRLGKKLGGKVKAFIPKELLSDCLDLPFASLSES-IALGSVLPKVT 668

Query: 729  VLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNII----ETGCFVRFL 782
            VL + + NL +++K  +I+  ++ P  +   ++    +V G   NII    E G FV   
Sbjct: 669  VLGDVAGNLKVTSKRFMIDWLEKHPRITGLQNLTKGELVCG---NIIRKHKEMGYFVELA 725

Query: 783  GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G     AP    R  A+     +L     +GQ+V + +  V+ E  R  L L    C   
Sbjct: 726  GGSALTAPARFIRPMALPVSMQELQ----IGQTVVARVSSVDLERKRFALILDAHLCIPP 781

Query: 839  DAS---FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             A    F     H+ LEE +    ++  N S++       IG  I+ KV E ++  VVV 
Sbjct: 782  GAELDYFAPSIVHYSLEE-LNWFIANNPNYSQVPE-----IGECIDIKVVEISECSVVVQ 835

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSN 952
            +  + D+ G   ++      ++ GS  +A +LDV    +L    L    +D   +  N  
Sbjct: 836  YASNPDLKGCAINNT---NILQKGSCAKALVLDV----KLPTCELVLFLLDGGVQHLNEK 888

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKE-NYLVLSLPEYNH---SIGYASVSDYNTQ 1008
            +       K+E    + +H+   A+  +  E +  V+S+P   H   +I    + + + Q
Sbjct: 889  KLQSLLCSKKEFDAKIWLHKREYAVATVETEKSAFVVSIPMRLHPNVNITSVDLDENSNQ 948

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGS 1065
                 + ++G  +I T M +         L+  K  +  +++  K+ K+   Y    +G 
Sbjct: 949  CIITPKLISGNVMIGTAMEILKKYG----LIHRKFKTPIKSAVKKKLKQFKIYTAKVMGM 1004

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVN----DDKSNVVENLFSNFKIGQTVTARI 1121
              + ++     LEL      G  GR+H +E +    D  S  +++     K G+TV  +I
Sbjct: 1005 WSKGDLYNAIELEL----PDGSIGRLHASEFDESFLDQTSQPIQSFLKKRK-GKTVNVKI 1059

Query: 1122 IA 1123
            + 
Sbjct: 1060 MC 1061


>gi|312075992|ref|XP_003140662.1| hypothetical protein LOAG_05077 [Loa loa]
          Length = 1279

 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 231/962 (24%), Positives = 414/962 (43%), Gaps = 123/962 (12%)

Query: 233  GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRS 286
            G+VL   V+S+ED G I++ GL S    GFL   +L     + S I+ +P LL      S
Sbjct: 152  GLVLNGVVESVEDKGVIINLGLQSVELKGFLAEKHLPPTFQKESLIEGQPLLLRIQNENS 211

Query: 287  IDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
             ++  +VV LS+ P+   +C+    +K + ++ L+PG ++         +GV ++     
Sbjct: 212  SNKKSRVVSLSAVPEM--ECLDDIAVKNLKLNDLMPGTLLLVNPLQPTASGVYVNIGNDI 269

Query: 346  TGTVDIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NR 399
             G V+  HL        ++ND +   K     ++F    S  + L  +P ++       R
Sbjct: 270  KGYVNRQHL-----PPRYRNDSFKCLKSFKTIVMFCQQNSNLLALNGHPDIIAASKFAKR 324

Query: 400  APPSHVKVGDIYDQSKVVRVDRG----LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
                +V  GDI  + KV  V++       L+L          A+   +++ E+ V     
Sbjct: 325  TNFENVHTGDII-ECKVSNVNKNGDVNFDLVLHGDERNSLVAAFARKTEL-EDHV----- 377

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
            +YK+G+  + R+L F+ +E +     +       +    D  PGM V  KV +V   G  
Sbjct: 378  EYKKGTIHQTRVLSFKMVERILIVATRKDILAQKMVCVKDAVPGMKVIAKVESVLPKGLF 437

Query: 516  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSK 573
            V+    +    P  H+S+  I +  K F VG EL  R+L V    +R+ +T+K++L  +K
Sbjct: 438  VKIYNSIPGFIPKIHLSDKLITRIDKHFAVGDELTCRILTVNEAKERLILTNKQSLTTNK 497

Query: 574  LAILSSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSM 629
              ++ SYAE T   IT G+I  + +H   G  + FY G +GF  P+    L       + 
Sbjct: 498  DTVIKSYAEVTTNAITTGYI--VSQHPSGGLIIGFYGGTRGFMFPKETERL------GTN 549

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV- 677
              VG  V+ R++S  P   R+ ++              +P  +   + V   ++V  ++ 
Sbjct: 550  IKVGLTVRVRVVSVDPQRGRMLVAVANAANDGTEIAKAQPFLIDGGNSVSFSAVVMNILS 609

Query: 678  --DVVTPNAVVVYVIAKGYS-----KGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLL 728
              +   PN ++   +  G       K  IP E L+D L+   A++ +S I  G    ++ 
Sbjct: 610  NDNKSKPNEILNVTVRLGKKLGGKVKAFIPKELLSDCLDLPFASLSES-IALGSVLPKVT 668

Query: 729  VLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNII----ETGCFVRFL 782
            VL + + NL +++K  +I+  ++ P  +   ++    +V G   NII    E G FV   
Sbjct: 669  VLGDVAGNLKVTSKRFMIDWLEKHPRITGLQNLTKGELVCG---NIIRKHKEMGYFVELA 725

Query: 783  GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G     AP    R  A+     +L     +GQ+V + +  V+ E  R  L L    C   
Sbjct: 726  GGSALTAPARFIRPMALPVSMQELQ----IGQTVVARVSSVDLERKRFALILDAHLCIPP 781

Query: 839  DAS---FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             A    F     H+ LEE +    ++  N S++       IG  I+ KV E ++  VVV 
Sbjct: 782  GAELDYFAPSIVHYSLEE-LNWFIANNPNYSQVPE-----IGECIDIKVVEISECSVVVQ 835

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSN 952
            +  + D+ G   ++      ++ GS  +A +LDV    +L    L    +D   +  N  
Sbjct: 836  YASNPDLKGCAINNT---NILQKGSCAKALVLDV----KLPTCELVLFLLDGGVQHLNEK 888

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKE-NYLVLSLPEYNH---SIGYASVSDYNTQ 1008
            +       K+E    + +H+   A+  +  E +  V+S+P   H   +I    + + + Q
Sbjct: 889  KLQSLLCSKKEFDAKIWLHKREYAVATVETEKSAFVVSIPMRLHPNVNITSVDLDENSNQ 948

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGS 1065
                 + ++G  +I T M +         L+  K  +  +++  K+ K+   Y    +G 
Sbjct: 949  CIITPKLISGNVMIGTAMEILKKYG----LIHRKFKTPIKSAVKKKLKQFKIYTAKVMGM 1004

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVN----DDKSNVVENLFSNFKIGQTVTARI 1121
              + ++     LEL      G  GR+H +E +    D  S  +++     K G+TV  +I
Sbjct: 1005 WSKGDLYNAIELEL----PDGSIGRLHASEFDESFLDQTSQPIQSFLKKRK-GKTVNVKI 1059

Query: 1122 IA 1123
            + 
Sbjct: 1060 MC 1061


>gi|61402583|gb|AAH91949.1| Pdcd11 protein [Danio rerio]
          Length = 400

 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 201/379 (53%), Gaps = 34/379 (8%)

Query: 54  FPRGGGHSLTQRER--DEIHAEVDAEFEA-VERGLHKKNKKKKKKTERKANETVDDLGSL 110
           FPRGG    T+R++  D I  EVD  F+   +    KK   K+ +  +   + VD+    
Sbjct: 5   FPRGG----TERKKPTDLIPHEVDNLFDTPAKAVKKKKKAVKQDEAPKPKKQKVDE---- 56

Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
             + I          + L++++ G  + G V EV++ ++V+ LP GL G   +    DA 
Sbjct: 57  --ENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAY 114

Query: 168 DPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
             IL+++++ ++  + ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K
Sbjct: 115 TNILNDKLDTDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNK 172

Query: 224 GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
            L+   ++  M L+  V+S+EDHGY++  G+     FLP+   + +S  D+  G  +  +
Sbjct: 173 ALNSVALKPAMTLSGCVESVEDHGYLVDIGIGGSKAFLPKK--STSSKRDLYVGQYVLVL 230

Query: 284 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
           +  +  + +VV LS +P  + K   +  +G ++D L+PG+++   V+ +  +G++++FL+
Sbjct: 231 IEDVKDSGRVVRLSQNPQALVKACAETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLS 290

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 403
            FTG VD  HL     +T     Y++ +++ ARIL+V P++R VGL+L  +LL    PP 
Sbjct: 291 SFTGVVDFLHLDEDKEST-----YSKGQEILARILYVQPSTRQVGLSLRSHLL----PPG 341

Query: 404 HVKVGDIYDQSKVVRVDRG 422
              V D++   +V  V +G
Sbjct: 342 GA-VLDLHFSERVGEVVQG 359


>gi|255714000|ref|XP_002553282.1| KLTH0D13156p [Lachancea thermotolerans]
 gi|238934662|emb|CAR22844.1| KLTH0D13156p [Lachancea thermotolerans CBS 6340]
          Length = 1731

 Score =  137 bits (344), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 210/864 (24%), Positives = 360/864 (41%), Gaps = 122/864 (14%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEF-----EAVERGLHKKNKK---KKKKTERKANETVD 105
           FPRGG  +LT  E  ++  E  ++       AV       +++   KKK + + A  T D
Sbjct: 39  FPRGGASALTPLELKQVANEAASDVLFGSGPAVASPAANDSQRPKKKKKTSPKAATGTKD 98

Query: 106 DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL----- 160
             G   GD  S  +    + +T +N+  G  + G +++VN+ DL + L   L G      
Sbjct: 99  AAG---GDDESVAV---IDHLTFRNLPVGTLVLGRISKVNKHDLCVALSDNLCGFVTLPN 152

Query: 161 -----ARAADALDPILDNEIEANEDNL--------------------------LPTIFHV 189
                 +  + +D  ++++ EA++D                            L   F  
Sbjct: 153 ISEPFTKLLEDIDESMESDKEASDDESDAEYDNDDDDQKSSQAQAAKLKDLPDLNNFFTQ 212

Query: 190 GQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
           GQ + C V     LD + K+  +++I LS+  S   + L  E +     +   VKSIEDH
Sbjct: 213 GQWLRCSVHSNSALDKNSKK--QKRIELSIEPSATNQ-LIEEDLARNCTIQCAVKSIEDH 269

Query: 247 GYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
           G IL  G+   TGF+ +      S  +  PG + L  V +   RT  V +   +  +   
Sbjct: 270 GAILDVGMDGITGFISKKEC--ESLPNFAPGTVFLANVAKKSGRTVTVNFEFKNKKSKVS 327

Query: 306 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
            ++      S+D ++PG  V    Q    NGV+        G ++I   Q     T+ K+
Sbjct: 328 QIS------SVDAVIPGQAVDFLCQKKTSNGVIGKVFGLVDGFLNI--SQQAIFYTDSKS 379

Query: 366 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
           D       N R+  +               L N++    V + D+     +     G   
Sbjct: 380 DQAYPIGSNTRVRIIAS-------------LKNKSGDKFVILSDLPSVLSLASETSGNSA 426

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY-------KEGSC-----VRVRILGFRHL 473
           L   P         V   D ++    KL K +       K G       V  R+LG+   
Sbjct: 427 LEAFPVGYTFENCEVKGRD-SQYFYLKLNKDFLGRVHLSKTGEQEPSGEVSARVLGYDSF 485

Query: 474 EG---LATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPL 528
           +G   LAT   K  A E L     D+  G +V G ++  V   G  +  F G  KA  P 
Sbjct: 486 DGYYQLATDP-KVIAVEYL--RPIDIPVGTIVPGCEITEVSDKGIKLSIFGGQFKATVPP 542

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV---KSKLAILSSYAE-- 582
            H+S+  +V P +KFK+G+++   ++    + ++ ++ KK+LV   + +  + SS+ +  
Sbjct: 543 LHISDIRLVYPERKFKIGSKVKGILINATERGQLFMSLKKSLVNLDREETELASSFEDIE 602

Query: 583 --ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
             A+        +   + +GC V F NG++GF P S +       P     +GQ V  ++
Sbjct: 603 KIASSDSKLAATVDIFKPNGCIVSFLNGLRGFLPNSNISEAYVKRPQDHLRLGQTVIVKV 662

Query: 641 MSSIPASRRINLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
           +       R+ ++  +        R + ++++   S++   V   T +++VV  +  G  
Sbjct: 663 LQHNKEQNRVIVTCKVSSEAASLQREAIENMIVGRSIIKVAVVEKTKDSIVVEQVGTGL- 721

Query: 696 KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQ-- 751
           +G +   HL+D  +E        +K G E + L++  +E + +  LS K SL+  A++  
Sbjct: 722 RGVVYVGHLSDSRVEQNRAQLKKLKIGSELEGLVIDKDERTRVFNLSCKKSLMKDAEKSL 781

Query: 752 LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
           LP    D      +S  +GYV ++ E G FV F G+  G    S AVD +   LS  +YV
Sbjct: 782 LPLNYQDVKQRGNHSPFNGYVKSVSEKGVFVAFNGQFVGLVLPSYAVDSRDVSLSSKFYV 841

Query: 809 GQSVRSNILDVNSETGRITLSLKQ 832
            QSV + +L  + +  R  LS K+
Sbjct: 842 NQSVSAFLLRTDDDNERFLLSFKE 865



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 220/885 (24%), Positives = 364/885 (41%), Gaps = 164/885 (18%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            + +G++V G       +  +   I  G  K T+P  H++D        +   K G +   
Sbjct: 508  IPVGTIVPGCEITEVSDKGIKLSIFGGQFKATVPPLHISDI--RLVYPERKFKIGSKVKG 565

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-------PNSVVHGYVCNIIETGCFV 779
            +L+   E   L +S K SL+N  ++    AS           +S +   V      GC V
Sbjct: 566  ILINATERGQLFMSLKKSLVNLDREETELASSFEDIEKIASSDSKLAATVDIFKPNGCIV 625

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             FL  L GF P S   +           +GQ+V   +L  N E  R+ ++ K    SS  
Sbjct: 626  SFLNGLRGFLPNSNISEAYVKRPQDHLRLGQTVIVKVLQHNKEQNRVIVTCK---VSSEA 682

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHS 898
            AS  +E                       +E  I+G S+I+  V E     +VV  +  +
Sbjct: 683  ASLQREA----------------------IENMIVGRSIIKVAVVEKTKDSIVVE-QVGT 719

Query: 899  DVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
             + G +    L+ + VE           GS ++  ++D  +  R+ +LS K   +    +
Sbjct: 720  GLRGVVYVGHLSDSRVEQNRAQLKKLKIGSELEGLVIDKDERTRVFNLSCKKSLMKDAEK 779

Query: 949  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKE---------NYLVLSLPEYNHSIGY 999
            +      Q  K++       G H   N  V+ V E          ++ L LP Y      
Sbjct: 780  SLLPLNYQDVKQR-------GNHSPFNGYVKSVSEKGVFVAFNGQFVGLVLPSYAVDSRD 832

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA---- 1055
             S+S          +F   QSV A    L +     R LL  K     ++S +  +    
Sbjct: 833  VSLS---------SKFYVNQSVSA--FLLRTDDDNERFLLSFKEPKNEKSSKTPESERPA 881

Query: 1056 --------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 1105
                    K+ S + +G + +A++  +K  +L +      HGRI I+EV D   ++ +  
Sbjct: 882  INPVDQSIKEVSEFALGKVTKAKVKAVKKNQLNVVLSDNLHGRIDISEVFDKFEDIKDPK 941

Query: 1106 NLFSNFKIGQTVTARIIA----KSNK-----PDMKKSFLWELSIKPSMLT-VSEIGSKLL 1155
               + FK G  +  ++I     KS+K         K+ L ELS KPS L  V+    K  
Sbjct: 942  KPLATFKKGDVLDVKVIGFHDVKSHKFLPVSHRSSKNVLIELSAKPSSLAGVNHATIK-- 999

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGK 1214
                DV +G  + G+V  V  +   LT+S  LKA++   D A E S+L    +  F +G 
Sbjct: 1000 ----DVKVGDSIVGFVNNVSKDIMWLTVSPSLKAKIDFFDLADENSQLGHGIEDSFPLGC 1055

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
            A+   V+SI++++  L +  R     GI D             I+ GD +  R+ KI   
Sbjct: 1056 ALRTKVVSIDQDRNTLSVSARTHDIKGIKD-------------INVGDCLPARLLKITDS 1102

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1333
               L++++G ++ G V F        +D L  Y +   D +    +   V  KV+ I + 
Sbjct: 1103 Y--LLLELGENVRG-VAFA-------TDALDDYSKPLKD-VYANQKNSIVSAKVISIDKD 1151

Query: 1334 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1393
              G  ++ L   +  DG + T+                  EDL    +V+G VK +T KG
Sbjct: 1152 -DGKLNLSLRSENPRDGTAKTH------------------EDLKRGDVVRGLVKKITEKG 1192

Query: 1394 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453
             FI LS  L A V +S L+D +++   K F   + V G+V++ +  S  + VTLK     
Sbjct: 1193 IFIYLSSTLQAFVPVSKLTDSFIKDWRKFFKPMQSVVGKVVNCDDDS-HILVTLK----- 1246

Query: 1454 TASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
               +SE+N       + +++ VG+I  G +K V  +GLF+ ++NT
Sbjct: 1247 ---ESEVNGELRILKSYNDIKVGEIFEGAVKNVTDFGLFVKLDNT 1288



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 111/250 (44%), Gaps = 15/250 (6%)

Query: 593  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ---VVKCRIMSSIPASRR 649
            + KI      +     V+G A  ++  LD   +P    +  Q   +V  +++S      +
Sbjct: 1096 LLKITDSYLLLELGENVRGVAFATD-ALDDYSKPLKDVYANQKNSIVSAKVISIDKDDGK 1154

Query: 650  INLSFMMKPTR----VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
            +NLS   +  R     + +DL K G +V G+V  +T   + +Y+      +  +P   L 
Sbjct: 1155 LNLSLRSENPRDGTAKTHEDL-KRGDVVRGLVKKITEKGIFIYL--SSTLQAFVPVSKLT 1211

Query: 706  DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
            D        +   KP       +V  ++ S++L++ K S +N   ++    + I    + 
Sbjct: 1212 DSF--IKDWRKFFKPMQSVVGKVVNCDDDSHILVTLKESEVNGELRILKSYNDIKVGEIF 1269

Query: 766  HGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
             G V N+ + G FV+      +TG A +++  D    DL+  + VG  V++ +L VN + 
Sbjct: 1270 EGAVKNVTDFGLFVKLDNTVNVTGLAHKTEVADSAVGDLASIFGVGDKVKAIVLKVNPDK 1329

Query: 824  GRITLSLKQS 833
             +++L LK S
Sbjct: 1330 KQLSLGLKAS 1339



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 127/305 (41%), Gaps = 40/305 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            D+++G  +   + K+ + + LL +  +++   F  D+  + S+  +          V+  
Sbjct: 1085 DINVGDCLPARLLKITDSYLLLELGENVRGVAFATDALDDYSKPLKDVYANQKNSIVSAK 1144

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V+SI+K+   L L LR   +   D T     D     +  GD+V G + KI     G+ +
Sbjct: 1145 VISIDKDDGKLNLSLR--SENPRDGTAKTHED-----LKRGDVVRGLVKKITEK--GIFI 1195

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
             +   L   V  ++L +  + D         F P+     G+ V C             H
Sbjct: 1196 YLSSTLQAFVPVSKLTDSFIKDW-----RKFFKPMQSV-VGKVVNCD---------DDSH 1240

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + ++L+ S              +V+   + L+   D+    I +G VKNVT  G F+ L 
Sbjct: 1241 ILVTLKES--------------EVNGELRILKSYNDIKVGEIFEGAVKNVTDFGLFVKLD 1286

Query: 1400 RKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
              ++   L   + ++D  V      F +G  V   VL V P  K++ + LK S  + +++
Sbjct: 1287 NTVNVTGLAHKTEVADSAVGDLASIFGVGDKVKAIVLKVNPDKKQLSLGLKASYFKESNE 1346

Query: 1458 SEINN 1462
            ++ ++
Sbjct: 1347 NQASD 1351


>gi|170571773|ref|XP_001891858.1| S1 RNA binding domain containing protein [Brugia malayi]
 gi|158603388|gb|EDP39328.1| S1 RNA binding domain containing protein [Brugia malayi]
          Length = 1795

 Score =  137 bits (344), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 218/869 (25%), Positives = 373/869 (42%), Gaps = 105/869 (12%)

Query: 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN 181
           +  +IT   ++ GM   GVV ++ E ++++    G+       +    +L  E   N   
Sbjct: 46  WNQRITPNFLTEGMLGLGVVMKIREAEILLECSDGVVVKVPVQNFGSLML--ETLRNSSI 103

Query: 182 LLPTIFHVGQLVSCIVLQLDDDKKEIGKRK----IWLSLRLSLLYKGLSLETVQEGMVLT 237
            L  +F VGQ+++  V++  +      KRK      +S    ++   L+   + +G+VL 
Sbjct: 104 TLEDVFRVGQMLAFKVIKGRETHDTQKKRKKASYPIVSCDPLIVNFHLNPGALIDGLVLN 163

Query: 238 AYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTR 291
             V S+ED G I+  GL S    GFL   +L     + S I  +P LL      S ++  
Sbjct: 164 GVVGSVEDKGVIIDLGLQSVELKGFLAERHLPSTFPKESLIKGQPLLLRIQNESSSNKKA 223

Query: 292 KVVYLSSDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 349
           +V+ LS+ P+   +   V K LK   ++ L+PG ++         +GV ++      G V
Sbjct: 224 RVISLSAVPEMECLDXAVVKKLK---LNDLMPGTLLLVNPLQPTHSGVYVNIGNDIKGYV 280

Query: 350 DIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPS 403
              HL        ++ND Y   K     ++F    S  + L  +P +     L  R    
Sbjct: 281 SRQHL-----PPRYRNDPYKCLKSFKTIVMFCQQNSNLLTLNGHPDIIAVSKLVKRTNFE 335

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
           +  +GDI  + +V  VD+   +  D+            ++  A +   K   +YK+G+  
Sbjct: 336 NXHIGDII-ECRVSSVDKNGNVNFDLVHEDERNS---LVAAFARKTKLKDSVEYKKGTVH 391

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
           + R+L F+ +E +     + +     + +  D  PG+ V  K+ +V   G  V+    + 
Sbjct: 392 QARVLSFKMVERILIVATQKNILAQKMVSIKDAVPGVKVTAKIESVLDKGLFVKIYNSIP 451

Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYA 581
              P  H+S+  I +  K F VG EL  RVL V    +R+ +T+K++L+ SK  I+ +YA
Sbjct: 452 GFIPKIHLSDKLITRIEKHFVVGDELNCRVLNVNKLKERLILTNKQSLISSKDTIIKNYA 511

Query: 582 EATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSMYHVGQVVK 637
           E T  +IT G+I  I +H   G  + FY G  GF  P+    L    +      VG  V+
Sbjct: 512 EVTTNVITTGYI--ISQHSSGGLVIGFYGGTCGFMFPKEAERLGTNVK------VGLTVR 563

Query: 638 CRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV---DVVTPN 683
            R++S  P  +R+ ++              +P  +  ++ +   ++V  V    D +T N
Sbjct: 564 VRVVSVDPQRKRLLVALANTTNGGTGIARAQPFLMDRENPLSFSAVVVNVSSNGDNLTRN 623

Query: 684 AVVVYVIAKGYS-----KGTIPTEHLADHLE---HATVMKSVIKPGYEFDQLLVLDNESS 735
            V+   +  G       K  IP E L+D+L+   H+  +   I PG    ++ VL + + 
Sbjct: 624 EVLNVSVRLGKKLGGKVKAFIPKELLSDYLDLPFHS--LNESIAPGSVLPKVTVLGDIAG 681

Query: 736 NLLLSAKYSLINSAQQLPSDASHIHPNSVVHG-YVC-NII----ETGCFVRFLG--RLTG 787
           NL +++K  +I+    L   A       +  G  VC NII    E G FV   G   LTG
Sbjct: 682 NLKVTSKRFIID---WLEKHARITGIQDLTKGDLVCGNIIQKHKEMGYFVELAGGSALTG 738

Query: 788 FA----PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS-- 841
            A    P    V  Q         +GQ+V + +  V+ E  R  L L    C    A   
Sbjct: 739 PARFIRPMMLPVSMQELQ------IGQTVVARVSSVDLERKRFALILDTHLCVPPGAKPD 792

Query: 842 -FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            F     H+ +EE    + ++  N    K      IG  I  KV E ++  VVV   +++
Sbjct: 793 YFAPSMIHYTVEELNWFIANNASNSQVPK------IGECIHVKVIEVSERNVVVQHGDNT 846

Query: 899 DVYGFITHHQLAGATVESGSVIQAAILDV 927
           ++ G   +   +   ++ GS  +A +LD+
Sbjct: 847 NLKGCTIN---STNILQKGSYAKALVLDI 872


>gi|392578567|gb|EIW71695.1| hypothetical protein TREMEDRAFT_27162 [Tremella mesenterica DSM
           1558]
          Length = 1475

 Score =  136 bits (343), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 186/856 (21%), Positives = 359/856 (41%), Gaps = 94/856 (10%)

Query: 54  FPRGGGHSLT--------QRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
           FPRGGG +LT        Q  R E  AEV AE   +   + + +  +      K N    
Sbjct: 55  FPRGGGTTLTALELKQTLQEGRREADAEVQAEVCQISFCIGQASDTQSSTAAVKRN---- 110

Query: 106 DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LAR 162
                 G  +S +  +   +++ K ++ GM++   +  V    L++ LP  L     +  
Sbjct: 111 ------GHQVSERQIKL-EELSYKRLTEGMRILTRIHTVLPLHLIVSLPNNLLAHVPITE 163

Query: 163 AADALDPILDNEIEANEDNL------------LPTIFHVGQLVSCIVL------------ 198
            +  L  +L  E EA   +             L ++F  GQ     VL            
Sbjct: 164 ISTTLTRLLSAE-EAMSVSEDEEEEDSSSAPDLGSLFTPGQYFPAKVLTVFPTASQSFAS 222

Query: 199 QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-- 256
           Q    +      ++ ++L    +   ++   +  G  +T  V S ED G+ + F   S  
Sbjct: 223 QYPPSETTRLAARVEMTLVPEKVNSDVASVDLSPGYAVTGEVISEEDKGWRVKFVAESSD 282

Query: 257 --FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
               G+L +   AE +   +  G LL   + +     +VV LS D  T+   V  + K +
Sbjct: 283 NVVEGWLSKAE-AEKNNFHIVVGQLLPCTISASSAGGRVVQLSLDHQTL---VRSEQKAV 338

Query: 315 S-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
           S +  L+PG +V   + +++ +G+ +    ++ GT+++ HL      ++  + Y   KKV
Sbjct: 339 SEVGSLLPGHLVIALITAVVPSGLNVKISGFYDGTIEVAHL--PLGDSDIDDKYKVGKKV 396

Query: 374 NARILFV----DPTSRAVGLTLNPYLLHNRAPPSH--------VKVGDIYDQSKVVRVDR 421
            AR+++     DP  R   L+  P+++   +P +         V++G ++D  KVVR+  
Sbjct: 397 QARVIYEANSHDP--RHFSLSALPHIITFSSPTTKTGIPLEQGVEIGRVFDSLKVVRIIP 454

Query: 422 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLAT 478
             G+   I  T      +V IS +++E +  L     +++ G+  R R++G   L+G+  
Sbjct: 455 EWGV---ICRTDDGLDGFVHISHLSDERLPALNSGTAEFRAGTVHRGRVIGHSPLDGVLL 511

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
              +      +    ++++ G V+KG +  +      V   G V  +    H ++  +  
Sbjct: 512 FSFERKIINQVFMQVNELQVGQVLKGTIQRLTDQMLFVNINGSVDGIVRPLHYADIVLKH 571

Query: 539 PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P K+F+ G+ +  RV  +     R+ +T K+TL+ S L I + +       +    I+KI
Sbjct: 572 PEKRFRPGSTVRARVFSLDPARNRVVLTLKRTLIDSPLDIPTKFENVRKGQLIPAVISKI 631

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
              GC V  +  ++ F P+SE         + ++++G+ V  R++   P S+RI +S   
Sbjct: 632 LDKGCLVDLFGDMKAFLPQSEASEAVVANIAEIFYIGKPVNVRVIDLTPESQRIFVSVRQ 691

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMK 715
                  +  VK+G +V+G+   + P  ++V +    +    +    LA   +     ++
Sbjct: 692 AKFDPVSEVPVKVGEIVNGIATEIHPAQILVTLTPSRHP-ALLSLRSLAIQRKMTDDELR 750

Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSAKY--------SLINSAQQLPSDASHIHPNSVVHG 767
           S +K G + D L V+    +  LL   Y        S+ N+   L  + S I P  ++ G
Sbjct: 751 SNLKVGEKVDGLRVVSKNPTTGLLIVAYTTRGGGVVSVSNTTAAL--EESDIQPGQIISG 808

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVD--GQRADLSKTYYVGQSVRSNILDVNSETGR 825
            V +    G  ++    + G      A D   + A+      VG+ +++ +L ++  +  
Sbjct: 809 RVASYTPVGTIIQLGHSVRGVVHPCDASDDFAEIAEGDGPLRVGEEIKAYVLAIDPISKA 868

Query: 826 ITLSLKQSCCSSTDAS 841
           + LS + S      A+
Sbjct: 869 VQLSTRVSRAHPDQAT 884



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 223/502 (44%), Gaps = 74/502 (14%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV----- 1063
            K P+K+F  G +V A V +L  +    R++L LK           R    S  D+     
Sbjct: 570  KHPEKRFRPGSTVRARVFSLDPARN--RVVLTLK-----------RTLIDSPLDIPTKFE 616

Query: 1064 ----GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN-VVENLFSNFKIGQTVT 1118
                G L+ A I++I    L     +   G +       + S  VV N+   F IG+ V 
Sbjct: 617  NVRKGQLIPAVISKI----LDKGCLVDLFGDMKAFLPQSEASEAVVANIAEIFYIGKPVN 672

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1177
             R+I  +  P+ ++ F+   S++ +    VSE+          V +G+ V G   ++   
Sbjct: 673  VRVIDLT--PESQRIFV---SVRQAKFDPVSEV---------PVKVGEIVNGIATEIHPA 718

Query: 1178 WALLTISRHLKAQLFILDSAYEPSEL--QEFQRRFHIGKAVTG-HVLSINKEKKLLRLVL 1234
              L+T++      L  L S     ++   E +    +G+ V G  V+S N    LL +  
Sbjct: 719  QILVTLTPSRHPALLSLRSLAIQRKMTDDELRSNLKVGEKVDGLRVVSKNPTTGLLIVAY 778

Query: 1235 RPFQDGISDKTVDISNDNM---QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
                 G+    V +SN      ++ I  G I+ GR++       G ++Q+G  + G VH 
Sbjct: 779  TTRGGGV----VSVSNTTAALEESDIQPGQIISGRVASYTPV--GTIIQLGHSVRGVVHP 832

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
             +      SD  +   EG   PL     G+ +K  VL I    +    V+LS R S    
Sbjct: 833  CD-----ASDDFAEIAEGD-GPLR---VGEEIKAYVLAIDPISKA---VQLSTRVS---- 876

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
                  D +T+   P   +E++ +L     ++G VK+V + G F+ L R + A+V++  L
Sbjct: 877  --RAHPDQATESIDP--EVERVGELQSGQSIRGLVKHVAAHGLFVALGRTVTARVMIREL 932

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1471
             D +V+  E  F + +LV+G++LSV+    +VE+TL+   +    +     LS+   G  
Sbjct: 933  FDDFVKEWESHFHVNQLVSGKILSVDEQRNQVEMTLRQDSTVRHKREAQFGLSDFKEGQK 992

Query: 1472 VIGQIKRVESYGLFITIENTNL 1493
            VI  +KRVE YG+F+ IE + +
Sbjct: 993  VIAVVKRVERYGMFLRIEGSGV 1014


>gi|380482965|emb|CCF40910.1| rRNA biogenesis protein RRP5, partial [Colletotrichum higginsianum]
          Length = 1210

 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 180/790 (22%), Positives = 330/790 (41%), Gaps = 111/790 (14%)

Query: 737  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L L+ K +L+NS   +  +           G +      G  + F G + GF P S+  +
Sbjct: 43   LRLTLKKTLVNSDAPIVKNYDDAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSE 102

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                D  + + VGQ V  ++LDVN E  R+ +S K               F L+++ A+ 
Sbjct: 103  AYIKDPKEHFRVGQVVSVHVLDVNPEERRMVVSCKDPSA-----------FGLDKQAAL- 150

Query: 857  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
                         +   IG ++  KV +  +  V V  EE S +   I    L+    +S
Sbjct: 151  -------------KALKIGDIVSAKVSQKTEDEVFVDLEE-SGLKAIIRTGHLSD---KS 193

Query: 917  GSVIQAA--------------ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 962
             S  QAA              +LD  +  R V L+ K  F           +A KK    
Sbjct: 194  ASKTQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFA----------EASKKGTLL 243

Query: 963  EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVI 1022
             +++D+ V   V A V  +    + +        I   +    + Q+ P       QS+ 
Sbjct: 244  SSAEDVTVGAVVPAYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRKHQSI- 302

Query: 1023 ATVMALPSSSTAGRLLLLLKAISETETSSSKRA--------KKKSSYDVGSLVQAEITEI 1074
              V  + S+    R+++   +  E    + + A        K  +   +G+++ A++  I
Sbjct: 303  -EVKIVSSNPEQNRIIVAPASADEPAPIAPESAVNSVDDSIKTINDIALGTILNAKVMSI 361

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARIIAKSNKPDMK- 1131
            K  +L +K      GRI +++  D   N+  ++N     K  + +  R I   +  + + 
Sbjct: 362  KNTQLNVKVADNIQGRIDVSQFFDAWENIKNLKNPLQQVKANEIIRVRAIGIHDSKNYRF 421

Query: 1132 -------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                      L E + K S +   E+    L     + +G     +V         + +S
Sbjct: 422  LPFSHRSTHSLIEFTAKASDIKAKEVE---LLSYDKIEVGSSHVAFVNNHGKNCLWVNLS 478

Query: 1185 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
              ++ ++ I+D + + S     ++ F +G A+   VLS++ +K  L L  R    G S+ 
Sbjct: 479  PTVRGRISIMDVSDDLSHAGNLEKYFPVGSALKVRVLSVDADKGHLDLSSR-SSTGSSEV 537

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T D    NM         + GR++K+      ++V++   + G VH  +L   C      
Sbjct: 538  TWDSLKKNM--------TLPGRVTKV--NDRSVMVKLSDSVSGPVHLVDL---C-----D 579

Query: 1305 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1364
             YDE        Y +G+ ++  V+E+ ++ +    + LS R S    S++  +D      
Sbjct: 580  NYDEAN---TLKYTKGEIIRVSVVEVDKSNK---RLRLSTRPSRILSSTSPVAD------ 627

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1424
               + + K+  +S   I++G+VKNVT KG F+ L   + A V + NLSD Y++  +  F 
Sbjct: 628  ---REITKLPQISSGDIIRGFVKNVTDKGVFVQLGGTVSAYVKIGNLSDRYIKDWKGNFQ 684

Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1484
            + +LV GRV++V+    +VE++LK S         +    ++  G IV G++++VE +G 
Sbjct: 685  VDQLVKGRVINVDTAINQVELSLKASVVENDYTPPV-TYKDIKEGQIVTGKVRKVEEFGA 743

Query: 1485 FITIENTNLV 1494
            FI ++N++ V
Sbjct: 744  FIVVDNSHNV 753



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 14/321 (4%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILS 578
           G+       H+++ ++  P KKF+ G  +  RVL V+ ++  + +T KKTLV S   I+ 
Sbjct: 1   GITGYVHESHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVK 60

Query: 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
           +Y +A   + T G IT     G  + F+  V+GF P S++      +P   + VGQVV  
Sbjct: 61  NYDDAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSV 120

Query: 639 RIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
            ++   P  RR+ +S    P+    D       +K+G +VS  V   T + V V +   G
Sbjct: 121 HVLDVNPEERRMVVS-CKDPSAFGLDKQAALKALKIGDIVSAKVSQKTEDEVFVDLEESG 179

Query: 694 YSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ 750
             K  I T HL+D     T      I  G     L+VLD NE    ++L+ K S   +++
Sbjct: 180 L-KAIIRTGHLSDKSASKTQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFAEASK 238

Query: 751 Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
           +  L S A  +   +VV  YV  I     +V+F G LTG  P++K     +   +     
Sbjct: 239 KGTLLSSAEDVTVGAVVPAYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRK 298

Query: 809 GQSVRSNILDVNSETGRITLS 829
            QS+   I+  N E  RI ++
Sbjct: 299 HQSIEVKIVSSNPEQNRIIVA 319



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 155/369 (42%), Gaps = 55/369 (14%)

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
             GRI I +V+DD S+   NL   F +G  +  R+++              +      L +
Sbjct: 482  RGRISIMDVSDDLSHA-GNLEKYFPVGSALKVRVLS--------------VDADKGHLDL 526

Query: 1148 SEIGSKLLFEECDVSIGQRVT--GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
            S   S    E    S+ + +T  G V KV++   ++ +S  +   + ++D      E   
Sbjct: 527  SSRSSTGSSEVTWDSLKKNMTLPGRVTKVNDRSVMVKLSDSVSGPVHLVDLCDNYDEANT 586

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIV 1263
               ++  G+ +   V+ ++K  K LRL  RP +  I   T  +++  +     I  GDI+
Sbjct: 587  L--KYTKGEIIRVSVVEVDKSNKRLRLSTRPSR--ILSSTSPVADREITKLPQISSGDII 642

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G +  +     G+ VQ+G  +   V    L +  + D    +   Q D        Q V
Sbjct: 643  RGFVKNVTDK--GVFVQLGGTVSAYVKIGNLSDRYIKDWKGNF---QVD--------QLV 689

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            K +V+ +   +     VELSL++S+          +  D   P  +    +D+    IV 
Sbjct: 690  KGRVINVDTAIN---QVELSLKASV----------VENDYTPPVTY----KDIKEGQIVT 732

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            G V+ V   G FI++    +   L   S +++  VE   + +  G +V  ++LSV+   K
Sbjct: 733  GKVRKVEEFGAFIVVDNSHNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKILSVDDERK 792

Query: 1442 RVEVTLKTS 1450
            R+  +LK S
Sbjct: 793  RITFSLKPS 801



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 439 YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSD 495
           YV  S +A+ +++  EKK++EG  V+ R+L  R  +      LK +       +V  + D
Sbjct: 5   YVHESHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVKNYDD 64

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            + GM   G +    + GA ++F G V+   PL  MSE  I  P + F+VG  +   VL 
Sbjct: 65  AEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSVHVLD 124

Query: 556 V--KSKRITVTHK 566
           V  + +R+ V+ K
Sbjct: 125 VNPEERRMVVSCK 137



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 132/316 (41%), Gaps = 39/316 (12%)

Query: 541 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           K F VG+ L  RVL V + +  +            +  ++      +   G +TK+    
Sbjct: 502 KYFPVGSALKVRVLSVDADKGHLDLSSRSSTGSSEV--TWDSLKKNMTLPGRVTKVNDRS 559

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
             V+  + V G     +L  D   E +++ Y  G++++  ++    +++R+ LS   +P+
Sbjct: 560 VMVKLSDSVSGPVHLVDL-CDNYDEANTLKYTKGEIIRVSVVEVDKSNKRLRLS--TRPS 616

Query: 660 R-------VSEDDLVKL-----GSLVSGVVDVVTPNAVVVYV--IAKGYSK-GTIPTEHL 704
           R       V++ ++ KL     G ++ G V  VT   V V +      Y K G +   ++
Sbjct: 617 RILSSTSPVADREITKLPQISSGDIIRGFVKNVTDKGVFVQLGGTVSAYVKIGNLSDRYI 676

Query: 705 ADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
            D            K  ++ DQL     + +D   + + LS K S++ +    P     I
Sbjct: 677 KDW-----------KGNFQVDQLVKGRVINVDTAINQVELSLKASVVENDYTPPVTYKDI 725

Query: 760 HPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
               +V G V  + E G F+       ++G   RS+  +    D  + Y  G  V++ IL
Sbjct: 726 KEGQIVTGKVRKVEEFGAFIVVDNSHNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKIL 785

Query: 818 DVNSETGRITLSLKQS 833
            V+ E  RIT SLK S
Sbjct: 786 SVDDERKRITFSLKPS 801



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 20/265 (7%)

Query: 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
           ++ D L   M +  RV  + +  VM+      +G V +  L + +   N    Y + + +
Sbjct: 537 VTWDSLKKNMTLPGRVTKVNDRSVMVKLSDSVSGPVHLVDLCDNYDEAN-TLKYTKGEII 595

Query: 374 NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLG 424
              ++ VD +++ + L+  P  + +   P           +  GDI         D+G+ 
Sbjct: 596 RVSVVEVDKSNKRLRLSTRPSRILSSTSPVADREITKLPQISSGDIIRGFVKNVTDKGVF 655

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 484
           + L       +  AYV I ++++  ++  +  ++    V+ R++            LKAS
Sbjct: 656 VQLG-----GTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAINQVELSLKAS 710

Query: 485 AFEGLV---FTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKP 539
             E       T+ D+K G +V GKV  V+ FGA  +V     V  LC    M+E  +   
Sbjct: 711 VVENDYTPPVTYKDIKEGQIVTGKVRKVEEFGAFIVVDNSHNVSGLCHRSEMAEKPVEDA 770

Query: 540 GKKFKVGAELVFRVLGVKSKRITVT 564
            + +  G  +  ++L V  +R  +T
Sbjct: 771 RRLYSEGDVVKAKILSVDDERKRIT 795



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 138/333 (41%), Gaps = 44/333 (13%)

Query: 373 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL-------GL 425
           V AR+L V P  R + LTL   L+++ AP     +   YD ++V     G        G 
Sbjct: 29  VKARVLSVRPRKRQLRLTLKKTLVNSDAP-----IVKNYDDAEVGMQTPGTITGFTAAGA 83

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL--------- 476
            L+          ++ +S ++E  ++  ++ ++ G  V V +L     E           
Sbjct: 84  QLEFFG---DVRGFLPLSQMSEAYIKDPKEHFRVGQVVSVHVLDVNPEERRMVVSCKDPS 140

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFE 535
           A G+ K +A + L       K G +V  KV         V     G+KA+    H+S+  
Sbjct: 141 AFGLDKQAALKAL-------KIGDIVSAKVSQKTEDEVFVDLEESGLKAIIRTGHLSDKS 193

Query: 536 IVK---PGKKFKVG---AELVFRVLGVKSKRITVTHKKTLVKS--KLAILSSYAEATDRL 587
             K     K+  VG   ++LV      + + + +T K +  ++  K  +LSS  + T   
Sbjct: 194 ASKTQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFAEASKKGTLLSSAEDVTVGA 253

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +   ++ +I     +V+F   + G  P+++L  D   +P+      Q ++ +I+SS P  
Sbjct: 254 VVPAYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRKHQSIEVKIVSSNPEQ 313

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVV 680
            RI    ++ P    E   +   S V+ V D +
Sbjct: 314 NRI----IVAPASADEPAPIAPESAVNSVDDSI 342



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 123/555 (22%), Positives = 228/555 (41%), Gaps = 87/555 (15%)

Query: 187 FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL---YKGL---SLETVQEGMVLTAYV 240
            +VG L+S +V+ LD +++   +R + L+ + S      KG    S E V  G V+ AYV
Sbjct: 204 INVGNLLSDLVV-LDKNER---RRAVILTQKPSFAEASKKGTLLSSAEDVTVGAVVPAYV 259

Query: 241 KSIEDHGYILHFGLPSFTGFLPRNNLAENS------GIDVKPGLLLQGVVRSIDRTRKVV 294
           + I      + FG  S TG LP+  L +++      G+     + ++ V  + ++ R +V
Sbjct: 260 REIGPFAVYVQFG-GSLTGILPKAKLPKDAQEKPAFGMRKHQSIEVKIVSSNPEQNRIIV 318

Query: 295 YLSSD-------PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
             +S        P++    V   +K  +I+ +  G +++ +V SI    + +       G
Sbjct: 319 APASADEPAPIAPESAVNSVDDSIK--TINDIALGTILNAKVMSIKNTQLNVKVADNIQG 376

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL------TLNPY------- 394
            +D+    + +   N KN  N  ++V A  +      RA+G+         P+       
Sbjct: 377 RIDVSQFFDAW--ENIKNLKNPLQQVKANEII---RVRAIGIHDSKNYRFLPFSHRSTHS 431

Query: 395 LLHNRAPPSHVKVGDI----YDQ-----SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
           L+   A  S +K  ++    YD+     S V  V+      L +  +P +    ++I DV
Sbjct: 432 LIEFTAKASDIKAKEVELLSYDKIEVGSSHVAFVNNHGKNCLWVNLSP-TVRGRISIMDV 490

Query: 446 AEE--EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           +++      LEK +  GS ++VR+L     +G    +   S+      T   +K  M + 
Sbjct: 491 SDDLSHAGNLEKYFPVGSALKVRVLSVDADKG-HLDLSSRSSTGSSEVTWDSLKKNMTLP 549

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
           G+V  V+    +V+    V     L  + +        K+  G  +   V+ V   +KR+
Sbjct: 550 GRVTKVNDRSVMVKLSDSVSGPVHLVDLCDNYDEANTLKYTKGEIIRVSVVEVDKSNKRL 609

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLIT-----------HGWITKIEKHGCFVRFYNGVQ 610
            ++ + +       ILSS +   DR IT            G++  +   G FV+    V 
Sbjct: 610 RLSTRPS------RILSSTSPVADREITKLPQISSGDIIRGFVKNVTDKGVFVQLGGTVS 663

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 666
            +     L      +    + V Q+VK R+++   A  ++ LS       V E+D     
Sbjct: 664 AYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAINQVELSLK---ASVVENDYTPPV 720

Query: 667 ----VKLGSLVSGVV 677
               +K G +V+G V
Sbjct: 721 TYKDIKEGQIVTGKV 735



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 44/289 (15%)

Query: 125 KITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLP 184
           ++T  ++   M L G V +VN++ +++ L   + G     D    + DN  EAN      
Sbjct: 536 EVTWDSLKKNMTLPGRVTKVNDRSVMVKLSDSVSGPVHLVD----LCDNYDEAN-----T 586

Query: 185 TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS---------LETVQEGMV 235
             +  G+++   V+++D   K     ++ LS R S +    S         L  +  G +
Sbjct: 587 LKYTKGEIIRVSVVEVDKSNK-----RLRLSTRPSRILSSTSPVADREITKLPQISSGDI 641

Query: 236 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQGVVRSIDRTR 291
           +  +VK++ D G  +  G  + + ++   NL++    D K       L++G V ++D   
Sbjct: 642 IRGFVKNVTDKGVFVQLG-GTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAI 700

Query: 292 KVVYLSSDPDTVSKCVT-----KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
             V LS     V    T     KD+K         G +V+ +V+ + E G  +  +    
Sbjct: 701 NQVELSLKASVVENDYTPPVTYKDIK--------EGQIVTGKVRKVEEFGAFI-VVDNSH 751

Query: 347 GTVDIFHLQNTF--PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
               + H       P  + +  Y++   V A+IL VD   + +  +L P
Sbjct: 752 NVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKILSVDDERKRITFSLKP 800


>gi|198413904|ref|XP_002123749.1| PREDICTED: similar to Protein RRP5 homolog (Programmed cell death
           protein 11) [Ciona intestinalis]
          Length = 1581

 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 177/367 (48%), Gaps = 32/367 (8%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           K S  +     + D+ PG +V+ K+  V   G  V                   ++  GK
Sbjct: 8   KRSVLDAKYLRYEDIIPGTLVQCKITQVQQKGLQV-------------------VLGSGK 48

Query: 542 K-FKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           K F  G  +  RVL   +KR  + +THK++LV SKL I+++Y       + HG+I+ I+ 
Sbjct: 49  KIFNEGNVIRCRVLTSSAKRRHLHLTHKQSLVGSKLPIVTNYDVIKRDDVIHGFISNIKP 108

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMK 657
            GCFV+FY+ V GF P  +L   P   P  ++ +GQVVKCR++S+   ++++ LSF  M 
Sbjct: 109 FGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRVISNDAGNKKLKLSFRTMN 168

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE-----HLADHLEHAT 712
             RV E + VK G +V+  V +   + + V ++     +   PT       L+D +E + 
Sbjct: 169 EKRVVEHN-VKPGMMVNVKVIMKEQSHLSVKIMGDESEQSDWPTAMISQYQLSDFVEISR 227

Query: 713 VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772
            + ++++     +  +V+  +   + +S K+SL+     L  D   +    ++  +V  I
Sbjct: 228 SIFTLVREETVLNDCIVVATK-QQIQVSRKHSLVERG--LKVDFCDLIIGQLLRCFVRQI 284

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
              G FV  +G L G  P+S   D   AD++  +  GQSV + +  +  +  R  +SL+ 
Sbjct: 285 TSYGVFVETVGGLVGLCPKSAICDKYLADVNDRFITGQSVVAVVTGIEDDRKRFLVSLRL 344

Query: 833 SCCSSTD 839
           S C   D
Sbjct: 345 SQCPLID 351



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 169/404 (41%), Gaps = 65/404 (16%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGI-----GFH--GRIHITEVNDD-KSNVVENLFSNFKIG 1114
            VGS V+ E+  I+     +K        G H  GRIH +EV ++ K NV  +  +N K+G
Sbjct: 852  VGSKVRGEVASIRATTAIVKLTSLPIVHGHHQVGRIHASEVFEECKQNV--SPMNNLKVG 909

Query: 1115 QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
             T++  +I   +   M   FL E++ + +   V E+           S+ + V     K+
Sbjct: 910  DTISCTVIGVRDV--MTHRFL-EITNRKATRGVIEL-----------SLWRSVPPPGDKI 955

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS--INKEKKLLRL 1232
            D E+           ++      + P  L     +   GK   G  +   + K    +  
Sbjct: 956  DAEFPFDRSRESYLVEVRPGVRGFIPKLLAMDGGKMGQGKMKQGRCVECIVVKHGDPIMF 1015

Query: 1233 VLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
              R    +G+ +   DI+          G +  G I +I++   G +V++     G++  
Sbjct: 1016 ACRGALTNGVGEDVCDIA---------VGHVTNGEIREIVAD--GALVRMELRGKGKIFS 1064

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
            T++ +    + L G        L  +  GQ ++C+V  I R+  G     L++R SL  M
Sbjct: 1065 TDISD----EFLDGM-------LKNFRVGQIIRCRV--IGRSNEGFV---LTMRKSL--M 1106

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
                      D++   + +  I D+ P  I +G +K  +  G F+ LSR +  +V  +N 
Sbjct: 1107 HEI------CDLEPVDRDICDITDVKPKQIFRGIIKVCSESGIFVTLSRCVHGRVTFANA 1160

Query: 1412 SDGYVESPEKEFPI---GKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            S  Y+    +   I   G++V   V+SV P   RVE+++   D+
Sbjct: 1161 SKFYISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSMLERDT 1204



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 17/137 (12%)

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
            ++EG  ++C+VL  S   R   H+ L+ + SL G    +   + T+ D           +
Sbjct: 51   FNEGNVIRCRVLTSSAKRR---HLHLTHKQSLVG----SKLPIVTNYDV----------I 93

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
              + ++ G++ N+   GCF+     +   V    LS   V++P+K F IG++V  RV+S 
Sbjct: 94   KRDDVIHGFISNIKPFGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRVISN 153

Query: 1437 EPLSKRVEVTLKTSDSR 1453
            +  +K+++++ +T + +
Sbjct: 154  DAGNKKLKLSFRTMNEK 170



 Score = 47.8 bits (112), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 167/395 (42%), Gaps = 61/395 (15%)

Query: 474  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP---- 529
            + L  G ++ S+ +   F   D+  G  V+G+V ++ +  AIV+       L  LP    
Sbjct: 828  KNLLLGKIQESSSDVGDFPFLDISVGSKVRGEVASIRATTAIVK-------LTSLPIVHG 880

Query: 530  -------HMSE-FEIVK----PGKKFKVGAELVFRVLGVKS----KRITVTHKK-TLVKS 572
                   H SE FE  K    P    KVG  +   V+GV+     + + +T++K T    
Sbjct: 881  HHQVGRIHASEVFEECKQNVSPMNNLKVGDTISCTVIGVRDVMTHRFLEITNRKATRGVI 940

Query: 573  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
            +L++  S     D++       +  +    V    GV+GF P+  L +D G         
Sbjct: 941  ELSLWRSVPPPGDKIDAEFPFDR-SRESYLVEVRPGVRGFIPKL-LAMDGGKMGQGKMKQ 998

Query: 633  GQVVKCRIM---SSIPASRRINLSFMMKPTRVSEDDL-VKLGSLVSGVVDVVTPNAVVVY 688
            G+ V+C ++     I  + R  L+       V ED   + +G + +G +  +  +  +V 
Sbjct: 999  GRCVECIVVKHGDPIMFACRGALT-----NGVGEDVCDIAVGHVTNGEIREIVADGALVR 1053

Query: 689  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL---VLDNESSNLLLSAKYSL 745
            +  +G  KG I +  ++D       +  ++K  +   Q++   V+   +   +L+ + SL
Sbjct: 1054 MELRG--KGKIFSTDISDEF-----LDGMLK-NFRVGQIIRCRVIGRSNEGFVLTMRKSL 1105

Query: 746  INSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFL----GRLTGFAPRSKAV 795
            ++    L        D + + P  +  G +    E+G FV       GR+T FA  SK  
Sbjct: 1106 MHEICDLEPVDRDICDITDVKPKQIFRGIIKVCSESGIFVTLSRCVHGRVT-FANASKFY 1164

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
                 +  K +Y G+ V   ++ V+ + GR+ LS+
Sbjct: 1165 ISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSM 1199



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG +   EI EI      ++  +   G+I  T+++D+    ++ +  NF++GQ +  R+I
Sbjct: 1034 VGHVTNGEIREIVADGALVRMELRGKGKIFSTDISDE---FLDGMLKNFRVGQIIRCRVI 1090

Query: 1123 AKSNKP---DMKKSFLWELS-IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
             +SN+     M+KS + E+  ++P    + +I         DV   Q   G +       
Sbjct: 1091 GRSNEGFVLTMRKSLMHEICDLEPVDRDICDI--------TDVKPKQIFRGIIKVCSESG 1142

Query: 1179 ALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
              +T+SR +  ++ F   S +  S+  E  + F+ G+ V   V+S++ +   + L +   
Sbjct: 1143 IFVTLSRCVHGRVTFANASKFYISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSMLER 1202

Query: 1238 QDGISDKTVDISND 1251
              G      DI ND
Sbjct: 1203 DTG----HCDIIND 1212


>gi|123507674|ref|XP_001329471.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
 gi|121912426|gb|EAY17248.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
          Length = 1601

 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 294/1376 (21%), Positives = 510/1376 (37%), Gaps = 285/1376 (20%)

Query: 153  LPGGLRGLARAADALDPILDNEIEA--NEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIG 208
            LPG  RG  +  +  DP L     A  N++ L  L   F++G  +   V+         G
Sbjct: 75   LPGNARGTLQLTEINDPFLQRLQHAIKNDEELPELENFFNIGDFLMATVISA-------G 127

Query: 209  KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE 268
               + LS+R +L+    S+   +EG +    VKS ED GYI+  G  + T FLP      
Sbjct: 128  THPVELSIRPNLVN---SMIEPEEGRIFWGAVKSKEDRGYIIDLGKENVTAFLPF----- 179

Query: 269  NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISI-------DLLV 320
                   P  L  G      +   V  L    +++ KC +TK     S+       D L 
Sbjct: 180  -------PAQLEVG------QPAFVTLLKKTSESIYKCELTKKDFFPSVPTVKPFFDTLR 226

Query: 321  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
            P  ++   V S   NG +      F G    +         +W         V  R + +
Sbjct: 227  PIDVLDGLVTSNFTNGALAINAQSFNGFCSKY---------SWPPGLTNGNNVQVRPVLI 277

Query: 381  DPTSRAVGLTLNPYLLHNRAPPS-HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            D   + +  T  P +++   P     K+G     SKV R+   +G+   +P         
Sbjct: 278  DHAQKTIWFTAIPRIVNGERPYCLDAKIGSKV-TSKVSRIRYNVGIEFTMPDN------- 329

Query: 440  VTISDVAEEEVRKL--EKKYKEGSCVR-----VRILGFRHLEGLATGILKASAFEGLVFT 492
                    E +R    EK+ K  + +      VRI   R ++ L          +  VF+
Sbjct: 330  --------ENLRVFIPEKETKSHALMAGQDHVVRITERRPIDDLLLAADDPEIIDLAVFS 381

Query: 493  HSDVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
              DV PG ++   + A+ D  G  V+    + ALCP+ +       K G   K       
Sbjct: 382  ADDVHPGQILDATISAINDKIGIFVELSPFLTALCPVSYCDNDPEPKKGDVKKC------ 435

Query: 552  RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYN 607
             VL V    + V  K+  V S+L  + S   A +    +  TH  + K  K    V F N
Sbjct: 436  VVLSVSEGHVRVAMKEKFVTSELPRVESLEIAHNLCESKEWTHALVRKSGKSAIIVEFIN 495

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            G+ G    S L +  G + S  Y  G V+K  I SS+    +IN           E  ++
Sbjct: 496  GLVGMIRSSSLPVSQGQDISKQYPQGYVIKTMI-SSVDGD-KINCV-----VSTDESQIL 548

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAK-GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
             LG   +  VD  T +AV V V AK G     I   H +D+   + ++   +  G +   
Sbjct: 549  TLGQTCTVTVDRFTEDAVYVRVPAKYGEINSVIQATHFSDYEPLSRLIFKNLNIGDKLRH 608

Query: 727  LLVLDNESSN--LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              ++ N  +N     + K  +  + + +P D   I       G+V  I   G FV F GR
Sbjct: 609  ACLIRNPGTNAPAYFTMKRCIRENTESIPKDTKSIKAGEHYFGFVSGIQNYGSFVSFFGR 668

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST------ 838
             +G               S+   +G SV +  +D  +E G I L+   +   S       
Sbjct: 669  ASGLIH------------SRQLTLGDSVNA-FVDQVTEDGHIRLTTPIADGESIKFLDSF 715

Query: 839  --DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
              DA  + + +L++++I                        ++G   +S+++    S++ 
Sbjct: 716  LKDAKKLNDKYLIDQEIQ-----------------------VQGDGEKSDEY---FSYQL 749

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
              D         L    V++G+ ++ A  DV           K+VF              
Sbjct: 750  DEDWIC------LTNEKVKAGTTLKIAYADVLS---------KSVF-----------AVL 783

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
              K+ R    ++ V  TV  + E +     + ++   N  I    + +YN +   +K+  
Sbjct: 784  PPKKPRSIENNVVVKATVIGVFEPI----FICTV---NGRIVICPMVNYNNKT--EKKIA 834

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             G+ +  TV  + S S +     +LK   +    S          ++   V A IT +  
Sbjct: 835  VGEELEITV--VDSRSESDETFEVLKGYPQYLLKS----------EISQNVVATITSVND 882

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
            +    K   G   RIH +++    S V E       +GQ V   ++   N      +FL 
Sbjct: 883  ISCNAKLNDGRTVRIHRSQL----SQVPE-------VGQQVKGSLMNGDN-----ATFLI 926

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL--FIL 1194
                 P  +              D  +GQ+VTG + KV N+   L++S  +   +    L
Sbjct: 927  TNPDSPQKIE-------------DFKVGQQVTGVITKVSNDSLRLSMSPFVLGTVSSLQL 973

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
             S       +     + +G    G V S++++   +  +   F   +             
Sbjct: 974  SSTNRKVVDKPLAESYSVGDLFEGWVSSVSEKMITVTGIDPSFSSNV------------- 1020

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1314
                         +K+L       ++ G +   +V    LK + V+D +   DE QF+PL
Sbjct: 1021 -----------EFAKVLK------IKTGDYATVKVGNGSLKKLDVTDVI---DEYQFNPL 1060

Query: 1315 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1374
            S   +G     KV+++                    +S  N S   +D+    K + KIE
Sbjct: 1061 SRLKKG-----KVIDVV------------------NVSEENVSMKLSDITGTPKEI-KIE 1096

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +     I+QGYV +       + L+R +  ++   +++D +++     +P+G +V  +++
Sbjct: 1097 E---GEILQGYVCHAIKGALLVRLARNVTGRLPFGSIADCFIQDAAALYPLGTVVTVKIM 1153

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
                  K+ +  +  S  R+        + +L VGD+V G I      G+F+ + +
Sbjct: 1154 ------KKTDSEITLSSKRSDITGVALTIQDLKVGDVVGGFITAANKNGVFVRLND 1203


>gi|355709772|gb|AES03703.1| programmed cell death 11 [Mustela putorius furo]
          Length = 399

 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 201/418 (48%), Gaps = 40/418 (9%)

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF 
Sbjct: 1   VKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFK 60

Query: 656 MKPTRVSED--------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
           +      E           V LG LV   V   T + + V V+    +   +PT HL+DH
Sbjct: 61  LLSDPKKEHLGHSQKKRRTVSLGQLVDVKVLEKTKDGLEVAVLPYN-TPAFLPTPHLSDH 119

Query: 708 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 765
           + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   + IHP  ++
Sbjct: 120 VANGPLLYHWLQTGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKSFAEIHPGMLL 179

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 180 IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 239

Query: 826 ITLSLKQSCCSSTDASFMQEHF---LLEEK--IAMLQSSKHNGSELKWVEGFIIGSVIEG 880
           + LSL+ S C   D +          LEE+  +  L S++ +   ++ +     G V++ 
Sbjct: 240 MLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNR-DSVLIQTLAEMTPGMVLDL 298

Query: 881 KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
           +V E  + G VV F E   V G +   + +  AG  VE G   +  IL+V   +  V +S
Sbjct: 299 EVQEVLEDGSVV-FSE-GPVPGLVLRASRYHRAGQEVEPGQKKKVVILNVDMLKLEVHVS 356

Query: 938 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 995
           L    +        NR+A+K K+  E            A+V+ ++E++ V SL E  H
Sbjct: 357 LCHDLV--------NRRAKKLKKGSE----------YQAVVQHLEESFAVASLVETGH 396



 Score = 40.4 bits (93), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            G+  +   ++ P M++ G+VK++   G F+     L      + +SD +V S    F  G
Sbjct: 164  GQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEG 223

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            + V  +V +V+   +R+ ++L+ SD 
Sbjct: 224  QTVVAKVTNVDEEKQRMLLSLRLSDC 249


>gi|391342289|ref|XP_003745453.1| PREDICTED: protein RRP5 homolog [Metaseiulus occidentalis]
          Length = 1008

 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 168/716 (23%), Positives = 285/716 (39%), Gaps = 92/716 (12%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGL-----------------RGLARAADALD 168
           +T K+I  GM L G V  V E  L I LPG +                 R  A ++    
Sbjct: 102 LTHKSIQEGMVLLGAVHYVQENSLRIALPGCVAQLPLNQLSHPYNDLVQRWRAESSAVKR 161

Query: 169 PILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
             L  + +  +   L  ++ VG ++  +VL      K  G   I LS   + +  G++ E
Sbjct: 162 RGLGQKAQPEKLMRLDAMYKVGHIIKVVVLS-----KNSGN--INLSALCNHVNGGITRE 214

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSF-TGFLPRNNLAENSGIDVKPGLLLQGVVRSI 287
           T+++GM+L A V S+ED+GY +  G+    + F+  +N  E   +     + L  V +S 
Sbjct: 215 TLRDGMILQAAVASVEDYGYSIELGIDGLASAFVSADNFTEVMYVG---QIFLVRVSKSH 271

Query: 288 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
               K V     P    + V KD    +++ + PG++    V    ENGV L+    F G
Sbjct: 272 GGRLKFV-----PHHFEE-VAKD-NDWNLNNVTPGLVAEGTVLQSDENGVCLAL---FDG 321

Query: 348 TVD--IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH- 404
           +V   +   Q         ND     KV   +++  P        LN      R PP H 
Sbjct: 322 SVTACVEPRQCLRGAAVSIND-----KVRVILMYTHPI-------LNTVYCSMRIPPVHP 369

Query: 405 ---------VKVGDIYDQSKVVRVDRGLGLLLDIP--STPVSTPAYVTISDVAEEEVRKL 453
                    + +G +  ++ VV+V     + LDIP  ++  +  A     +V+++E    
Sbjct: 370 ADPFKEFHGLSLGQLVKKAVVVQVTSSF-VKLDIPIKNSRHTVCAIAAKPNVSDDEAADP 428

Query: 454 EKKYKEGSCVRVRILGFRHLEG-LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
              +  G     R++G    EG L   +  +   EG  +T  ++  G ++  KV   +  
Sbjct: 429 SDVFSVGQIAPCRVIGMSLFEGELYVSLRHSVVIEGCYYTEHELYVGRILPAKVKYTNDC 488

Query: 513 GAIVQFPGGVKALCPLPHMSEF-------EIVKPGKKFKVGAELVFRVLGVK--SKRITV 563
           G + +   G  A C     S         E   PGK  +V      R +  K    R  V
Sbjct: 489 GIVFEICPGTIAFCDFTEASPILNKSNVAEKYPPGKPVQVA----IRYINGKHYPPRYFV 544

Query: 564 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 623
           T  K L+KSK  I+  Y E     I+ G +   E+ G  + FYN V+G+ P  +L     
Sbjct: 545 TCNKQLIKSKHGIIDRYDEGNVGKISDGIVLLTERRGLLLGFYNKVRGWVPEEQLP-HSA 603

Query: 624 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-------- 675
             P  ++  GQV+  ++++  P + R+ LS     ++ S      +G+ +S         
Sbjct: 604 SRPDEVFRKGQVLSAKVLNVTPEASRMTLSLRCVDSKESTGQTDDVGAGISTDRRYIFEG 663

Query: 676 ----VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 731
                  VV      + ++ +G+ K ++P EHL+D  + +  +   I  G   D+L V  
Sbjct: 664 KTHLEALVVDKEGTCLKIVVEGFGKSSLPAEHLSDFPDLSKSLLERINIGDRLDELAVFG 723

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +     + S K  +        S+A  I   +++   V  +   G  V     L+ 
Sbjct: 724 SSEGTTIFSMKPLVAQVLASCGSEAMKITEGAILPALVKKVTGRGVMVSLPNNLSA 779


>gi|403353839|gb|EJY76463.1| S1 RNA binding domain containing protein [Oxytricha trifallax]
          Length = 2023

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 139/539 (25%), Positives = 236/539 (43%), Gaps = 83/539 (15%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL 182
           ANKI     + G      ++E+  K L++      +G   + + L  + D          
Sbjct: 128 ANKINRLKFNVGSLGLFAISEIQTKYLIVNYTRNTKGYV-SLEGLSHLADK--------- 177

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEI---GKR--KIWLSLRLSLLYKGLSLETVQEGMVLT 237
               F +GQ +   VL     K      G R  K+ L++++  L K LS E +   M+L 
Sbjct: 178 ----FKIGQFIIASVLSAGTSKYNTETSGNRNKKLQLTIQIDHLNKSLSAENLAPNMLLQ 233

Query: 238 AYVKSIEDHGYILHFGLPSFT-GFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV-- 294
             V+S E  G++++FGL   T GFLP  N  ++  I    G L+Q +++++  + KV   
Sbjct: 234 GLVESKEAKGHLINFGLKDKTKGFLPFTNDTQHLQI----GSLVQVLIKTVLASSKVAKC 289

Query: 295 -YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            +++   +   + +  ++K I+I  L PG MV+++V  IL+NG+ L+FL  F GT+   H
Sbjct: 290 EFINQSVEEYHQYM--NVKDITIHNLKPGFMVNSKVSKILDNGIELTFLGGFKGTIFTDH 347

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-------LHNRAPPSHVK 406
           L  + PT      Y   +K+ AR++ VDP ++ V ++L P++       ++N    S V 
Sbjct: 348 LDKSDPTK-----YKIGEKIGARVIAVDPQAQNVQMSLLPHIKQMNDKVVYNTMKQSGVH 402

Query: 407 VGDIYDQSKV----------VRVDRGLGLLLDIPST---------------PVSTPAYVT 441
           VG I +++ V          V+  +     L    T               P  +     
Sbjct: 403 VGQIIEKATVEKELYGGSYKVKFGKDQIAFLHKSHTKEDVVPEEEEEEEEIPTQSKDKKQ 462

Query: 442 ISDVAEEEV---RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 498
                 +E+   +KLEK         VR+    + +GL    +K         T+ D+K 
Sbjct: 463 KVAKKSDELEVGQKLEK---------VRVKEINYFDGLPILSIKEDILNSATLTYEDLKC 513

Query: 499 GMVVKGKVIAVDSFGAIV--QFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLG 555
           G  +   V  V+     V  Q    VK    L HM++F + V P K   +G  L  RV  
Sbjct: 514 GDYISTMVTEVNEDKKFVTLQVNDFVKGRLYLEHMADFPMKVIPPKYKDLGKTLKMRVFN 573

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           V  K++ +  T K TL+K+K+ +  SY E       +G I    ++G  V+ + G++G 
Sbjct: 574 VDKKTRTLDFTRKDTLLKAKVPVYQSYREVEKGSKLYGVIVGENEYGYVVKSFGGIKGL 632



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 179/407 (43%), Gaps = 49/407 (12%)

Query: 738  LLSAKYSLINSAQQLP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
            ++S++Y LI     +P   +D S    N +  G V    ++G  V+FL  L         
Sbjct: 807  IISSQYDLIQLKDSIPRKNADISTDAINRIFTGVVSESNKSGVMVKFLDGLKKLVIIKDL 866

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
               Q  + S+ Y  G+ VR  +  +N       L LK +     D + +Q+    ++++ 
Sbjct: 867  ETVQ--NFSEIYKPGKVVRVALNKLNR------LCLKNNVIYLNDQTLIQK----DKELQ 914

Query: 855  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-THHQLAGAT 913
            +        ++LK  E   IG  I+G++    D+G++VS E++  + GF+ + HQ++G T
Sbjct: 915  IRSFYSEIETQLKAHE-IKIGDKIQGEISLVKDYGLIVSVEKYEGLTGFVLSEHQVSGRT 973

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
             + G  I   ++D+   + ++DLS      ++  E   ++ ++  K         G +Q 
Sbjct: 974  HKEGQKITCIVMDIDFEKEIIDLS------EKLAENTKSKDSKIAK---------GSNQK 1018

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--KFPQKQFLNGQSVIATVMALPSS 1031
            V  IVE+ KE+YL++S        G      YN    + P ++F  G  +   ++     
Sbjct: 1019 V--IVELNKEDYLIVSFKNNKSQFGLLMAQTYNNDHSENPNEKFTIGDELDVQIV---DQ 1073

Query: 1032 STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP---LELRLKFGIGFH 1088
            +  G  L +   ++ +++    +     S   G LV A+I   K         +      
Sbjct: 1074 TETGFFLTIPVIVAPSKSQDKNKQVSTVSLAQGVLVNAQIKSKKHDCIYLQIQQQSQLSI 1133

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            GR+H  E   D      N F NF++G+TV A+++  S   D KK+F+
Sbjct: 1134 GRLHRIECQTD------NEFKNFQVGETVQAKVLKISQGAD-KKTFI 1173



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--K 1441
            GYV N++  GCFI +  +   +  L+ L+D      ++  P+G+LV  RV+ V+  +  K
Sbjct: 1412 GYVTNISKSGCFIQVGYQSTVRSGLNELNDDSSFDFQENMPLGRLVLCRVVKVDESNGQK 1471

Query: 1442 RVEVTLKTS 1450
            R  VTL+ S
Sbjct: 1472 RFNVTLRRS 1480


>gi|328850494|gb|EGF99658.1| hypothetical protein MELLADRAFT_22369 [Melampsora larici-populina
           98AG31]
          Length = 1489

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 151/702 (21%), Positives = 291/702 (41%), Gaps = 117/702 (16%)

Query: 54  FPRGGGHSLTQRERDEIHAE----VDAEFEAVERGLHKKNKKKKKKT-------ER-KAN 101
           FPRGGG  LT  E  +   E     D  F    + +   +  K+K++       +R K+N
Sbjct: 11  FPRGGGTHLTAVEVKQAGHEGKTDADQIFIPDPKPVKDTSSSKRKRSLLDPSSHQRIKSN 70

Query: 102 ETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-- 159
                  + F +            +  + +++G+KL G++ E+   +L++ LP  L G  
Sbjct: 71  NISASQNTPFQNAYR------IEHLNHRRLTSGLKLAGLIIEIRPLELIVALPSQLVGHV 124

Query: 160 ----------------------------LARAADALDPILDNEIEANEDNLLPTIFHVGQ 191
                                           +D  D    + +++     L  IF VGQ
Sbjct: 125 PITEISSYYTQKLQESTDQDDEDTDSEDDQSNSDKADD-YQHRVKSGGLQGLNEIFKVGQ 183

Query: 192 LVSCIVLQLDDDKKEIGKR---------KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
            + C+V+        I  R         ++ L++  + L   L  + +   M L   VKS
Sbjct: 184 WIRCMVIHTTSGTPNIAHRASPLVRAAHRVKLTIDPARLNGDLEKKDLSANMTLDGAVKS 243

Query: 243 IEDHGYILHFGLP----------------SFTGF-----LPRNNLAENSGIDVKPGLLLQ 281
           IED+GY++   +P                +F  F     +P+ +L       +  G +++
Sbjct: 244 IEDNGYVVDLCVPVNSSQQASSSAPQTVTTFVLFSDAIKIPQTHLHNRELWQI--GQIVR 301

Query: 282 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL-ENGVMLS 340
             +  + ++     +  DP  ++  +      I+ID ++P  +V+  + +++ E G+ + 
Sbjct: 302 CRIDKVSKSGSTCTVFVDPTGIASSLLT--TAINIDCVLPLHLVTCLITAVVPEEGLNVE 359

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS---RAVGLTLN----- 392
           FL Y+ GT+D+++L      T  ++ +   +K+ AR+L+   +S   +   L+L      
Sbjct: 360 FLGYYKGTIDLYNLGVGIGGTKVEDRFKAGQKIRARVLWHTRSSSPQKTFSLSLLDHCVN 419

Query: 393 ------PYLLHNRAP---PSH-------VKVGDIYDQSKVVRVDRGLGLLLDIP--STPV 434
                 P LL N  P   PS          +G  +  ++V  V +  GL ++    S   
Sbjct: 420 MVTPGLPLLLQNDTPNGLPSESIEHLMRFNIGYTFQSTRVCGVVKDWGLYVEYSDNSNQQ 479

Query: 435 STPAYVTISDVAEEEVRKL----EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
               ++ IS + +  +  +       Y+ G+  + +++G   ++G+     + S  E   
Sbjct: 480 RVIGFIHISAIRDTHLSDILVEGSGPYRLGTTHKAKVVGISPIDGMLQLSSQPSVVEQPY 539

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
               DV  G +V  +V  + S    +   GG+  +    H S+ ++  P KKF+ G +L 
Sbjct: 540 IRPQDVAVGEIVTAEVTRLCSSALFLSIFGGLDCVVWPDHYSDVKLQHPEKKFQAGMKLT 599

Query: 551 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            RVL V     RI +T +K+L+    + ++SYA A   ++T   IT+++     + F+  
Sbjct: 600 ARVLYVNPNKHRIALTLRKSLLDPTFSSITSYATAQPGMVTDAVITRVKARHLEIEFFGQ 659

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            +G  P  E   +   E  S +  G+VVK +I+S  P +R+I
Sbjct: 660 TRGVIPIRE-AAEKFSESLSDFRAGRVVKVQILSVDPLARKI 700



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 1325 CKVLEISRTVRGTFHVELSLRSS-LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            C V+++ R    T  V L+LRSS L+     ++S++    D P   +  I+DL     ++
Sbjct: 879  CAVVKVDRQ---TSKVYLTLRSSRLNRGVQKSASEVR---DRP---IVSIKDLKKGDKIR 929

Query: 1384 GYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
            G+++ +  K G  + +   L AKV +S L D  +     +F +G++V+G +++    S+ 
Sbjct: 930  GFIQRICEKAGLLVRIGTNLSAKVKISELFDQDIPDWVGKFKVGQVVSGVIITPVKASRG 989

Query: 1443 VEVTLKTSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            ++++L+ +      S  +   L     G IV   I+++E YG+F+ I++  +
Sbjct: 990  IQLSLRENPFGPKVSDPKKLVLEKFQEGQIVGTTIRKIEKYGMFLAIDDAGI 1041



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
            +D++   IV   V  + S   F+ +   LD  V   + SD  ++ PEK+F  G  +  RV
Sbjct: 543  QDVAVGEIVTAEVTRLCSSALFLSIFGGLDCVVWPDHYSDVKLQHPEKKFQAGMKLTARV 602

Query: 1434 LSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIK 1477
            L V P   R+ +TL+ S  D   +S +         V D VI ++K
Sbjct: 603  LYVNPNKHRIALTLRKSLLDPTFSSITSYATAQPGMVTDAVITRVK 648


>gi|242223612|ref|XP_002477408.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723046|gb|EED77394.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1088

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 193/838 (23%), Positives = 336/838 (40%), Gaps = 145/838 (17%)

Query: 169 PILDNEIEANEDNLLPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKI 212
           P  D E +    + +P +FH+   GQ V  +V             L    D+ +   R+I
Sbjct: 16  PPSDEEDDGPSKSRIPDLFHIFPAGQYVRAVVSAVHPPGATDASVLGRARDEVQKASRRI 75

Query: 213 WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RNNLA 267
            LSL    +   +S   ++ G  L+A VKSIEDHGYIL  G+P  +GFL      +    
Sbjct: 76  ELSLIPEKVNASVSKSDLRAGFTLSAAVKSIEDHGYILDLGIPDVSGFLSFKEAKKGPFG 135

Query: 268 ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVST 327
           +++ + V  G L+   V  I    +   +S D  +V      ++   S+  ++PG +V +
Sbjct: 136 DDNKLPV--GRLIDVCVVKITGNGRTCTVSVDSASVRDASLSEVA--SVTSILPGTLVQS 191

Query: 328 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSR 385
            V +++ +G+ L  L YF GT+D FHL+      + + +Y   +K+ ARIL+ V P T  
Sbjct: 192 LVTAVVPDGLNLQVLGYFVGTIDQFHLR----AGDVEENYKVGQKIKARILYDVSPSTPP 247

Query: 386 AVGLTLNPYLLHNRAPPSHVK---------------VGDIYDQSKVVRVDRGLGLLLDIP 430
              L++  ++L  +  P H                 VG I +  KVVRV+   GL+++I 
Sbjct: 248 RFALSVVEHVL--KLSPKHAAGSDGSKDSSLQDAYPVGAILEAVKVVRVEAERGLVVEIS 305

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 487
           S       +V IS V++E V  L      +K G+  + R+ G  HL+G      + S  E
Sbjct: 306 S---GLEGFVHISQVSDEHVPSLSPSSGHWKVGTVHKARVTGHFHLDGCLQLSFRPSVLE 362

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
                  +V+ G ++KG V  +      V   G V  +    H ++  +  P ++F+ G 
Sbjct: 363 QKFLQVGEVQVGELIKGTVKRLTESALFVSMSGSVDGVVWPNHYADIALKHPQRRFRPGV 422

Query: 548 ELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRF 605
                V  ++  +  +T + T V++ L++  L++    +   +     T  +     V  
Sbjct: 423 -----VAELQKDKAVITLQPTQVRALLSLNNLANRRGVSLTQLRTSLKTDEKLQDLVVVS 477

Query: 606 YNGVQGFA-----PRS-ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            N  +GF      P+  E  L  G        VGQVV  R++                  
Sbjct: 478 RNPEKGFVLVATKPKEKESLLQKGSLNLDTIQVGQVVGGRVLR----------------- 520

Query: 660 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI--PTEHLADHLEHATVMKSV 717
              +  LVKL S +SG +                +  G    P +         +++K+V
Sbjct: 521 HGRQGALVKLTSSISGTLHPTD--------TCDDFDSGRAFPPVD---------SILKAV 563

Query: 718 IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCN 771
           +         L +D +   L LS + S +   Q            S +     V G++ N
Sbjct: 564 V---------LSIDRDKRQLTLSTRPSRLYPDQAKDVKDHEVDGVSDLKVGQTVRGFIKN 614

Query: 772 IIETGCFVRFLGRLTGFAPRSKAV-DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           + E G FV  LGR      + K + D    D    +   Q V+  +L V+ +  ++ ++ 
Sbjct: 615 VAEHGIFV-MLGRHIDARVQIKELFDEYVKDWKSHFAANQLVKGRVLSVDFDKKQVEMTF 673

Query: 831 KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-----IIGSVIEGKVHES 885
           +         S        +  +A L   +     +K +E +     I GS + G  H+S
Sbjct: 674 RSGDLKRDARS--------QSTLADLSEGQKVDGRVKKIEDYGLFIEIAGSKLSGLCHKS 725

Query: 886 NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
                 +S  + +DV        LA  +      ++A IL + + +R +   LK  + 
Sbjct: 726 E-----LSDNKDADV-------TLALRSFRENDQVKAVILSIDREKRRISFGLKPSYF 771



 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 134/539 (24%), Positives = 232/539 (43%), Gaps = 113/539 (20%)

Query: 1018 GQSVIATVMALPSSSTAGRL-------LLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
            GQ + A ++   S ST  R        +L L       +  SK +  + +Y VG++++A 
Sbjct: 230  GQKIKARILYDVSPSTPPRFALSVVEHVLKLSPKHAAGSDGSKDSSLQDAYPVGAILEA- 288

Query: 1071 ITEIKPLELRLKFGI------GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 1124
               +K + +  + G+      G  G +HI++V+D+    +     ++K+G    AR+   
Sbjct: 289  ---VKVVRVEAERGLVVEISSGLEGFVHISQVSDEHVPSLSPSSGHWKVGTVHKARVTGH 345

Query: 1125 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                        +LS +PS+L       +   +  +V +G+ + G V ++      +++S
Sbjct: 346  -----FHLDGCLQLSFRPSVL------EQKFLQVGEVQVGELIKGTVKRLTESALFVSMS 394

Query: 1185 RHLKAQLFILDSAYEPSELQEFQRRFHIG--------KAVTGH----------------- 1219
              +     +  + Y    L+  QRRF  G        KAV                    
Sbjct: 395  GSVDG--VVWPNHYADIALKHPQRRFRPGVVAELQKDKAVITLQPTQVRALLSLNNLANR 452

Query: 1220 ----------------------VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
                                  V+S N EK  + +  +P +    +  +   + N+ T I
Sbjct: 453  RGVSLTQLRTSLKTDEKLQDLVVVSRNPEKGFVLVATKPKE---KESLLQKGSLNLDT-I 508

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ-FDPLSG 1316
              G +VGGR+  +  G  G +V++   + G +H T        D    +D G+ F P+  
Sbjct: 509  QVGQVVGGRV--LRHGRQGALVKLTSSISGTLHPT--------DTCDDFDSGRAFPPVDS 558

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV--DTPGKHLEKIE 1374
                  +K  VL I R  R     +L+L        ST  S L  D   D     ++ + 
Sbjct: 559  -----ILKAVVLSIDRDKR-----QLTL--------STRPSRLYPDQAKDVKDHEVDGVS 600

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            DL     V+G++KNV   G F+ML R +DA+V +  L D YV+  +  F   +LV GRVL
Sbjct: 601  DLKVGQTVRGFIKNVAEHGIFVMLGRHIDARVQIKELFDEYVKDWKSHFAANQLVKGRVL 660

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            SV+   K+VE+T ++ D +  ++S+ + L++L  G  V G++K++E YGLFI I  + L
Sbjct: 661  SVDFDKKQVEMTFRSGDLKRDARSQ-STLADLSEGQKVDGRVKKIEDYGLFIEIAGSKL 718



 Score = 48.5 bits (114), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
             D+ +GQ V G++  V      + + RH+ A++ I +   E   +++++  F   + V G
Sbjct: 600  SDLKVGQTVRGFIKNVAEHGIFVMLGRHIDARVQIKELFDE--YVKDWKSHFAANQLVKG 657

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             VLS++ +KK + +  R       D   D  + +    + EG  V GR+ KI     GL 
Sbjct: 658  RVLSVDFDKKQVEMTFRS-----GDLKRDARSQSTLADLSEGQKVDGRVKKIED--YGLF 710

Query: 1279 VQI-GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
            ++I G  L G  H +EL +   +D            L  + E   VK  +L I R  R
Sbjct: 711  IEIAGSKLSGLCHKSELSDNKDADVTLA--------LRSFRENDQVKAVILSIDREKR 760


>gi|302779846|ref|XP_002971698.1| hypothetical protein SELMODRAFT_412232 [Selaginella moellendorffii]
 gi|300160830|gb|EFJ27447.1| hypothetical protein SELMODRAFT_412232 [Selaginella moellendorffii]
          Length = 425

 Score =  126 bits (317), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 133/292 (45%), Gaps = 93/292 (31%)

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
            Q V  YV +V + W  L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+N
Sbjct: 137  QSVIRYVQEVKDNWTWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSVN 196

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             E+K                 VD+S    QT+                       Q+G +
Sbjct: 197  HERK----------------QVDLSLQK-QTYCAR--------------------QMGKY 219

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
                 + T +                 DP   + EGQFV+C+VL++ R  RG   +ELS 
Sbjct: 220  QKSSCNDTWID----------------DPAILFTEGQFVRCRVLDLKRPGRGKMGLELS- 262

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
                                                   G+VKNV  KG F++LS  L+A
Sbjct: 263  ---------------------------------------GFVKNVMEKGFFVVLSPSLEA 283

Query: 1405 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
            ++ L NLS+ +V++P + FP GK+++GR+LS+EPLS  +E++L  ++++  S
Sbjct: 284  RIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIEMSLVDAETKRIS 335


>gi|195451940|ref|XP_002073142.1| GK13970 [Drosophila willistoni]
 gi|194169227|gb|EDW84128.1| GK13970 [Drosophila willistoni]
          Length = 1379

 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 138/590 (23%), Positives = 271/590 (45%), Gaps = 55/590 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKK-TERKANETVDDLGSLFG 112
           FPRGG   +  +E    + + +  F A ++ + K  K K K+  E   +ET         
Sbjct: 8   FPRGG---IVHQESKSGNNDSNIIFGATQKKIRKAPKSKDKQPNELDQDET--------- 55

Query: 113 DGISGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALD 168
             +  +L  + A  +    +   M + GVV E +   + + LPG L   A  AD   A  
Sbjct: 56  -NVGEQLEAFSAESLKFDTLQEEMLVMGVVRETSATSVQVALPGRLTARALVADISEAYA 114

Query: 169 PILDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS 226
            +    +  + +E + L  +FHVGQ+V    ++   D+ E  +  + LSLR + ++  L 
Sbjct: 115 HVAKAAMAGDTSEYHDLTELFHVGQIVYGRAIK--TDQLEAKRITVILSLRPADVHSQLQ 172

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS-GIDVKPGLLLQGVVR 285
             ++++G + +  +  I++HG+I+  G+     F+P +   EN   +     L ++ +  
Sbjct: 173 HTSIKKGFIFSGAIAEIQEHGFIIETGIQGLQAFVPHDESNENQFHVGQLAFLKVKQITH 232

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY- 344
             +++     + SD +   K   K     ++D L+PG +V  +V   L++G+  S L   
Sbjct: 233 DKNQSTCTCQIISDQN---KLKIKSQNETNLDYLLPGSIVRFKVSKQLKDGLKGSILNEN 289

Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-- 402
           F   ++  HL +   T     DY+ +++ NAR+L+  P ++ V LTLN   +  +A P  
Sbjct: 290 FVAYINEHHLAHPLHTL---QDYDLNEEYNARVLYTMPLTKLVYLTLN---VEIKAGPEQ 343

Query: 403 ---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                    + +K G I +++KV+R+  G G++L +        +Y  I    +    K 
Sbjct: 344 EVEDEAEDQTELKKGSIVEKAKVLRLASG-GVILLLNKQSKGLISYSCIKSHYKGNYDKD 402

Query: 454 E--KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
           E   KY   +  +VR+LG+  +E L       +     ++T  D+ PG +V  +++  D 
Sbjct: 403 EVLSKYGRKTKHKVRVLGYDLIESLYYCSDDPNVVNEKLYTLEDLNPGDLVSARLVKQD- 461

Query: 512 FGAIVQFPGGVK-ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKT 568
               ++  GG    L  +  + +   + PG++++VG  +  R+L V  +R T  +T++  
Sbjct: 462 ----IKINGGWSLKLGKINGIIDALYLAPGQRYEVGQRVRCRILDVNLERRTCYLTNRPE 517

Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
            +     +L++   A +  +  G + K E +   ++F NG++G   + +L
Sbjct: 518 YLSKSAKLLTNLQSAQEGQVFTGTVVKNELNFFLIKFCNGLKGVLYKQQL 567


>gi|449675704|ref|XP_002155874.2| PREDICTED: protein RRP5 homolog [Hydra magnipapillata]
          Length = 824

 Score =  123 bits (308), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 197/400 (49%), Gaps = 56/400 (14%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            +GSLV A +  IKP +L +    G  +GRIHI+ ++D        L + FK  Q V A++
Sbjct: 74   LGSLVSAVVKGIKPAQLSVTLMNGRLNGRIHISNIHDTIEQGKSPLKA-FKPLQVVEAKV 132

Query: 1122 IAKSN----------KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            I   +            ++ +S + ELS+KPS+LT  E  ++    +   SIG+ V G+V
Sbjct: 133  IGFRDLRTHNYLPISHTNISRSMV-ELSLKPSVLTSQETETEKKINQ--FSIGEVVNGFV 189

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              V  +   ++++  +K ++ +L+ +    +L +++  F +G   +  +LS  ++     
Sbjct: 190  ASVTKKSLWISVNPLVKGKVSVLNISENIMDLNKWKSVFKVGLGYSFRILSCKED----- 244

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
                          ++++       + +G ++ G+ISK+L    GL++++     G  H 
Sbjct: 245  -------------FLELTRLGEDLNVAKGVVINGKISKVLKN-AGLLIELSNGKAGVAHI 290

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
            TEL            D  +  PL+G+   QFV+CKVL I +       ++LSLR S    
Sbjct: 291  TELS-----------DHFEESPLNGFAVDQFVRCKVLAIKKND----EIDLSLRQSRINE 335

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
               N+ +         +++   +D+    I++GYVK+ +  G F+ LS+ ++ +V + NL
Sbjct: 336  GQANAGEWD-------RYINGYDDIKEGDILRGYVKSCSKIGVFVSLSQTINGRVQIKNL 388

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
            S  +V+  E  F +GKLV  +V+ ++P +  ++++L+  D
Sbjct: 389  SQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSLRGKD 428



 Score = 43.9 bits (102), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
            ++ TR+ ED  V  G +++G +  V  NA ++  ++ G + G      L+DH E + + 
Sbjct: 245 FLELTRLGEDLNVAKGVVINGKISKVLKNAGLLIELSNGKA-GVAHITELSDHFEESPL- 302

Query: 715 KSVIKPGYEFDQLL----VLDNESSNLLLSAKYSLINSAQQLPSDASH-------IHPNS 763
                 G+  DQ +    +   ++  + LS + S IN  Q    +          I    
Sbjct: 303 -----NGFAVDQFVRCKVLAIKKNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGD 357

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           ++ GYV +  + G FV     + G             D    ++VG+ V++ ++ ++  T
Sbjct: 358 ILRGYVKSCSKIGVFVSLSQTINGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTT 417

Query: 824 GRITLSLKQSCCSSTDAS 841
             I LSL+    +  D +
Sbjct: 418 NHIDLSLRGKDVNDVDPA 435



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 495 DVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +V  G+V+ GK+  V  + G +++   G   +  +  +S+     P   F V   +  +V
Sbjct: 256 NVAKGVVINGKISKVLKNAGLLIELSNGKAGVAHITELSDHFEESPLNGFAVDQFVRCKV 315

Query: 554 LGVK-SKRITVTHKKTLVKSKLA-------ILSSYAEATDRLITHGWITKIEKHGCFVRF 605
           L +K +  I ++ +++ +    A        ++ Y +  +  I  G++    K G FV  
Sbjct: 316 LAIKKNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGDILRGYVKSCSKIGVFVSL 375

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              + G      L      +  S++HVG++VK +++   P +  I+LS 
Sbjct: 376 SQTINGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSL 424


>gi|242004044|ref|XP_002422951.1| programmed cell death protein, putative [Pediculus humanus
           corporis]
 gi|212505867|gb|EEB10213.1| programmed cell death protein, putative [Pediculus humanus
           corporis]
          Length = 1410

 Score =  120 bits (300), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 139/632 (21%), Positives = 275/632 (43%), Gaps = 39/632 (6%)

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEA 177
           +Y  ++    +  GM L G+V++V++K + + LPG LRG   +   ++    ++ N    
Sbjct: 52  KYVEELNASLVQEGMILLGIVSDVSDKIVNVSLPGSLRGVITIPNVSEFYTSLIQNMSSQ 111

Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
           +E   L  IF  G ++   +L + ++ K +      ++    ++   LS + + + ++LT
Sbjct: 112 SEVLGLTEIFQPGDILPVKILSVSEESKSL-----MVTSDPKMINSNLSYDAIDKDLILT 166

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT--RKVVY 295
             VKS EDHG+I+ FG+    GFL  + + E+   ++K G +++  V S  ++     V 
Sbjct: 167 GNVKSKEDHGFIIDFGIDKVLGFLKFDKVKEDG--ELKVGQIIRSSVISCLKSPGSCSVQ 224

Query: 296 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF--H 353
           LS+      K   K    +S+  LVPG      V  +L NGV + +         I+  +
Sbjct: 225 LSTLKTDFEKAYIKLNSSVSLSFLVPGFQFQVVVTKVLLNGVEVKYGNDVNKKGFIYEDN 284

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ 413
           L   FP        N   +  A +L+V P    +   + P     +      K GDI   
Sbjct: 285 LPMKFPNL---EKVNVGTEYIATLLYVKPLVNVLYFKVLP----KKKIEWPFKFGDIV-S 336

Query: 414 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE-----EEVRKLEKKYKEGSCV-RVRI 467
            KVV+  R  GL++ I         ++ IS +       E  + +E  Y     + ++R+
Sbjct: 337 GKVVKARRS-GLVVKIVKGINVARCFIPISKLKNNKKILENDKSIETLYPVNKKIPQIRL 395

Query: 468 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
               +++    G    ++ +   F+ +D+K G ++  K+++   +   ++    +     
Sbjct: 396 GSRNYMKRQYLGATDKASLQEKYFSVTDLKCGEIISAKILSFSKYSVKLKIGQSILGTVA 455

Query: 528 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
              +++  +  P  +FKVG ++    +  +SK + +T K +L+K K  ++    E     
Sbjct: 456 FNDLTDVPLKNPSLRFKVGQQVT--EINPESKFVRLTMKPSLIKEKNILMDLNFEKNHFY 513

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G I+++      V+F+NGV G  P+       G    + +  G ++KC  ++    +
Sbjct: 514 L--GVISRVLHGKLIVKFFNGVIGILPKRFTNHLDGGSLKTYFAEGHLIKCCPINVTSEN 571

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV--VYVIAKGYSKGTIPTEHLA 705
           + +    +   +     DL+K+G   +  V   T N  +  V V  K   +G +P + L+
Sbjct: 572 KLL----LSLLSSTEGSDLLKVGKKYNVTVVNKTENGFLLDVQVNKKKTCQGYLPKQLLS 627

Query: 706 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
            H    T + S   P  +F    V  +E++ L
Sbjct: 628 VHQNLTTPLLSTYFPNEKFSAYCVFASETNGL 659


>gi|324500113|gb|ADY40064.1| Protein RRP5 [Ascaris suum]
          Length = 1854

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 225/1039 (21%), Positives = 415/1039 (39%), Gaps = 148/1039 (14%)

Query: 183  LPTIFHVGQLVSCIVLQL-----DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
            L  +F  GQ+++  VL+         +K+ G R+  ++   S++   L   ++  G+VL 
Sbjct: 114  LADVFVPGQMIAYKVLRAATATDSKGRKQGGTRRAVVTCCPSVVNAHLMPSSLLNGLVLN 173

Query: 238  AYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID--VKPGLLLQGV--VRSIDRTR 291
              V+S+ED G I+ FGL S    GFLP   L + + ++  ++  +LL  +  + ++ +  
Sbjct: 174  GSVESVEDKGVIISFGLRSCELRGFLPSAALPQYANMETLIRGQVLLIRIQHLSAVGKVG 233

Query: 292  KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 351
            +V+ +S+ P+ V     + ++ + +++L+PG ++         +GV +       G +  
Sbjct: 234  RVINVSAIPE-VENLDERVVQKLHLNMLMPGTILQAEPIQSAPHGVYVELGNGVKGFIRK 292

Query: 352  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-----VK 406
             HL    P    ++     + + A ++F    S+ + L+ +P ++    P        + 
Sbjct: 293  QHL----PPRLRRDLSKLVRSIRAVVMFCQQNSQMLVLSAHPDIIALSKPQKRNTFEGIA 348

Query: 407  VGDIYDQSKVVRVDR----GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
            +GD     +V  VDR       L+LD         AY T S +     +     YK GS 
Sbjct: 349  IGDKV-LCEVNEVDRYGNVHFDLILDNAPKGSLVSAYATKSHLQSANEKD---AYKPGSV 404

Query: 463  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
             +VR++ +R +E       K   F   + +  D  PG  ++ K+ ++ + G  ++    +
Sbjct: 405  HQVRVISYRLIERQLVVSNKREIFVQKMVSLVDAVPGEKIRAKIESIKANGLGMKVYDRI 464

Query: 523  KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSY 580
             A  P+ H+++ +  +  K +  G  L  R+L   +  +R+ +T K +L+ +   ++  Y
Sbjct: 465  SAFIPIAHVADKQFTRIEKHYSKGQMLDCRILEADALKRRLILTSKPSLLNTSYKLIKDY 524

Query: 581  AEATDRLITHGWI-TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV-VKC 638
            +      +T G++  K E  G  + FY GV+ +             P     +G+V + C
Sbjct: 525  SAENVGAVTLGYVRAKHENGGLLIGFYGGVRAYM-----------FPKEAARLGEVKLGC 573

Query: 639  RI---MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG------VVDVVTPNAVVVYV 689
             +   + S+   R+  L  +  P+  S+  +++  + + G          VT N+ VV  
Sbjct: 574  TVQVNVQSVDVERQRMLVAVADPSLTSDTAILRSNAFMEGKDVPLCYSATVTGNSQVVTG 633

Query: 690  IAKGYS-----------KGTIPT----EHLADHLEH-ATVMKSVIKPGYEFDQLLVLDNE 733
              +G              GT+ T    E L+D L+     +    K G +  Q+ VL  +
Sbjct: 634  TKQGQRIDLSVHLGKKLGGTVQTSMALELLSDTLDPLVDTLTDCFKIGSKIPQVTVLSEK 693

Query: 734  SSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHG-YVCNII-----ETGCFVRFLGRLT 786
            +  + +S+K  LI+  ++ P     IH  + +  G  VC  +     E G FV   G   
Sbjct: 694  AGIIKVSSKRFLIDWLERHPP----IHSIDDLSKGLLVCGTVTQRHSEMGYFVELAGGSA 749

Query: 787  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
              AP    VD    D      VGQ+V + +  ++ E  R +L L    C   D     E+
Sbjct: 750  LVAPARFIVDSTEEDPQNEVQVGQTVLARVSSLDVERKRFSLILNPPLCCELDDG---EN 806

Query: 847  F------LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE----- 895
            +      LLE  IA          + +W    + G      +  S D  +VV        
Sbjct: 807  WCSLGLRLLEYTIA----------DWEWCAANLEGGKELPSLGASVDVTLVVPLNDALTV 856

Query: 896  EHSD--VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            E SD  + G+             G  ++A +LDVA    L    L+    D  +E  S  
Sbjct: 857  EWSDQKLRGYARKGNFPERKYTKGETLKALLLDVA----LPSCELEFYIFDEDKE--STL 910

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYL------------VLSLPEYNHSIGYAS 1001
             + K K+     + + +   V   V  VK +++            V+ LP   H      
Sbjct: 911  HSAKTKKGHTKRRKVELCSEVEVCVAAVKRDFIATVTMEDSFERAVIYLPSRFH------ 964

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAG---------RLLLLLKAISETET--- 1049
              +  T   P  +F  G    A V     S+  G           LL  K  ++ E    
Sbjct: 965  -PNIVTPSAPAGRFECGAVCKAVVKQFCGSTLIGLAEGDLAFATALLSAKVKTKQEKKRG 1023

Query: 1050 --SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
              S+SKR K    Y    +   +  +     + L+   G  GR+H +E+++       N 
Sbjct: 1024 ADSASKRVKPFMVYPAKVIGPWKRGKQSACAVELELPGGILGRLHGSELDESLLENERNP 1083

Query: 1108 FSNF---KIGQTVTARIIA 1123
             + F   KI + V  ++I+
Sbjct: 1084 IAAFLREKIAKNVYVKVIS 1102


>gi|402589157|gb|EJW83089.1| hypothetical protein WUBG_05999 [Wuchereria bancrofti]
          Length = 598

 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 143/585 (24%), Positives = 263/585 (44%), Gaps = 47/585 (8%)

Query: 91  KKKKKTERKANETVD-DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDL 149
           KK++K     +ET D    S+  +  S  +  +  +IT   ++ GM   GVV ++ E ++
Sbjct: 14  KKRRKIHSVNDETTDVKQVSIKNEQKSEYVGVWNQRITPNFLAEGMLGLGVVMKIREAEI 73

Query: 150 VICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDD--DKKEI 207
           ++    G+       +  + +L  E   N    L  +F VGQ+++  V++  +  D ++ 
Sbjct: 74  LLECSDGVIVKVPVQNFGNLML--ETLRNSSVTLEDVFRVGQMLAFKVIKGRETHDTQKK 131

Query: 208 GKRKIWLSLRLSLLYKGLSLE--TVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPR 263
           GK+  +  +    L     L    + +G+VL   V S+ED G I++ GL S    GFL  
Sbjct: 132 GKKSPYPIVSCDPLIVNFHLNPGALIDGLVLNGVVGSVEDKGVIINLGLQSVELKGFLAE 191

Query: 264 NNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD--TVSKCVTKDLKGISID 317
            +L     + S +  +P LL      S ++  +V+ LS+ P+   +   V K LK   ++
Sbjct: 192 RHLPSTFPKESLVKGQPLLLRIQNESSSNKKTRVINLSAVPEMECLDDAVVKKLK---LN 248

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YNQHKKVNAR 376
            L+PG ++         +GV ++      G V   HL        ++ND Y   K     
Sbjct: 249 DLMPGTLLLVNPLQPTHSGVYVNIGNDIKGYVSRQHL-----PPRYRNDPYKCLKSFKTI 303

Query: 377 ILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
           ++F    S  + L  +P ++       R    ++ +GDI  + +V  +D+   +  D+  
Sbjct: 304 VMFCQQNSNLLTLNGHPDIIAVSKFVKRTNFENIHIGDII-ECRVTSMDKSGNVNFDLVH 362

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVF 491
                     ++  A +   K   +Y++G+  + R+L F+ +E +             + 
Sbjct: 363 EDERNSL---VAAFARKTKLKDSVEYEKGTVHKARVLSFKMVERILMVTTLKDILAQKMV 419

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           +  D  PG+ V  K+ ++   G  V+    +    P  H+S+  + +  K F VG EL  
Sbjct: 420 SIKDAVPGVKVTAKIESLLDKGLFVKIYNSIPGFIPKIHLSDKLVTRIDKHFAVGDELNC 479

Query: 552 RVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH---GCFVRFY 606
           R+L V    +R+ +T+K++L+ SK  I+ +YAE T  +IT G+I  I +H   G  + FY
Sbjct: 480 RILNVNKLKERLILTNKQSLISSKDTIIKNYAEVTTNIITTGYI--ISQHSSGGLVIGFY 537

Query: 607 NGVQGFA-PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            G++GF  P+    L    +      VG  V+ R++S  P   R+
Sbjct: 538 GGIRGFMLPKEAERLGTNVK------VGLTVRVRVISVDPQRERL 576



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 749 AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
           AQ++ S    + P   V   + ++++ G FV+    + GF P+    D     + K + V
Sbjct: 415 AQKMVSIKDAV-PGVKVTAKIESLLDKGLFVKIYNSIPGFIPKIHLSDKLVTRIDKHFAV 473

Query: 809 GQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
           G  +   IL+VN    R+ L+ KQS  SS D 
Sbjct: 474 GDELNCRILNVNKLKERLILTNKQSLISSKDT 505


>gi|154274013|ref|XP_001537858.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415466|gb|EDN10819.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 799

 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 149/607 (24%), Positives = 264/607 (43%), Gaps = 41/607 (6%)

Query: 185 TIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
           + F +GQ +   V   + +    K  GK+ I LS+       GLS   +     + A V 
Sbjct: 187 SYFKLGQYLRAAVTSTETEVNHGKIKGKKHIELSVDPREANSGLSKSDLVVNATVQASVL 246

Query: 242 SIEDHGYILHFGLP--SFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSS 298
           S+EDHG ++  GL      GF+    +  +   + +K G +   VV   +    VV LS+
Sbjct: 247 SLEDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGNVVKLSA 306

Query: 299 DPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
           +  T              +I   +PG      +  +   G+    +      VDI     
Sbjct: 307 NLPTAGSIKKSHFLTSAPTIHSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGA 366

Query: 357 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAPPSHV-K 406
           T    +    Y+   K+  R++   PT+  + L  +         P +L  ++    V  
Sbjct: 367 TAGKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFMPTVLDRKSSCEVVPA 426

Query: 407 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCV 463
           +  I  + KV +V+ GLG+             +V IS +++++V  +   +  Y   S  
Sbjct: 427 ISAIVPEVKVTKVEPGLGVYAQFNDKHY---GFVHISRLSDDKVDSISSTQGPYMVDSTH 483

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQF 518
             RI+GF  L+ L    L+    +       DV  G VVKGK+    I  D   G IV  
Sbjct: 484 EARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSL 543

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
             G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T KKTL+ S+ + 
Sbjct: 544 ADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESST 603

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
              Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P+  +++GQVV
Sbjct: 604 WCDYSDILPGNKSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVV 663

Query: 637 KCRIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAK 692
               ++     R++ +S    +  T   +  L  +  G+ VSG V   +   +++ +   
Sbjct: 664 NVHALNVDAELRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDS 723

Query: 693 GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSA 749
           G     +  EH++D          + I+ G + ++LL+L+ + S+ L+  + K SL  + 
Sbjct: 724 GLV-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNIQKSHQLIKVTNKPSLKQAR 782

Query: 750 Q--QLPS 754
           Q  +LP+
Sbjct: 783 QRGELPT 789



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 125/270 (46%), Gaps = 22/270 (8%)

Query: 593 ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 648
           +TK+E   G + +F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 436 VTKVEPGLGVYAQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 492

Query: 649 RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 699
             NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 493 LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 551

Query: 700 PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
           P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 552 PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 608

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 609 DILPGNKSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 668

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHF 847
           +V++E  ++ +S K    S+       EH 
Sbjct: 669 NVDAELRKLVVSCKDQLSSTEAYKRALEHI 698



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 107/238 (44%), Gaps = 33/238 (13%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            G +V G+I K+L    G+ GL+V +   + G V    + +  +  P     E +F     
Sbjct: 519  GAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHP-----EKKFR---- 569

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
              EG  V  ++L ++   R           + +  +  + SD+      PG       + 
Sbjct: 570  --EGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYSDI-----LPG-------NK 615

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            SP  I+     ++ S G  +    ++   + +S +S+ Y++ P + F IG++V    L+V
Sbjct: 616  SPGTII-----SIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNV 670

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
            +   +++ V+ K  D  +++++    L ++H G+ V G +    +  + + +E++ LV
Sbjct: 671  DAELRKLVVSCK--DQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLV 726


>gi|50554347|ref|XP_504582.1| YALI0E30217p [Yarrowia lipolytica]
 gi|49650451|emb|CAG80186.1| YALI0E30217p [Yarrowia lipolytica CLIB122]
          Length = 1567

 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 171/722 (23%), Positives = 297/722 (41%), Gaps = 89/722 (12%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
           ++L NIS G  + G +  +     V+ LP  L G       +   L+ +IE  E+  L  
Sbjct: 86  LSLDNISVGSIILGRIVNIQSTACVVSLPNNLHGFVSCVQ-VSEALNAKIEEGEEFDLSD 144

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
               GQ V   V+  D   K +G     LSL    + + +    +   M L   VKS ED
Sbjct: 145 YVKEGQWVRASVV--DTSNKRLG-----LSLLPKDVNRDIEDSDIDANMALQVEVKSKED 197

Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
            GY++  G+    GF+   ++  N G      ++L  V+R   RT     ++ D +   +
Sbjct: 198 KGYVVATGIKGKKGFIKDTDVELNKG-----QIVLACVLRISGRT-----ITLDTEHTGE 247

Query: 306 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
            V + L+  S    V G  V+        NG ++S       T+D F  Q +F       
Sbjct: 248 AV-RQLEDFS--SAVAGTPVTVVTTDKRNNGAVVSVFGSVDATIDPF--QGSF------- 295

Query: 366 DYNQHKKVNARILFV---DPTSRAVGLTLNPYLLH-NRAPPSHVKVGDIYDQSKV--VRV 419
              +     AR++       + + + L+  P++++   A P   ++G+ +   +V  V+V
Sbjct: 296 GLEEKTSSVARVVATLDRGASGKRMLLSALPHVVNLEDADP---RIGEAFLPGQVLGVKV 352

Query: 420 DRGL--GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
              +  GL +++     + P ++ IS +A+E+       Y+ G  +  RI+ F   + + 
Sbjct: 353 THVVQHGLFVELAE---NIPGFIHISKLADEKTDST-ADYEVGQTLDARIIAFAPQDEMY 408

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIA-VDSFGAIVQFPGGVKALCPLPHMSEFEI 536
               + S  +      SD+  G  V+G V   +   G IV     + A+ P  H+ + ++
Sbjct: 409 VLSCEQSVMDAKYIATSDLSAGDKVEGTVTRHLPKGGIIVALSSFITAVVPAAHLVDAKM 468

Query: 537 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA-EATDRLITHGWITK 595
             P  KFK+G+++  R+LGV S    +T KK+L         SYA E  D  I  G +  
Sbjct: 469 ANPELKFKIGSKIKGRLLGVDSSGCRMTIKKSLYNLPKDDFISYASEIGD--IGSGTVVN 526

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++  GC V F++  Q + P  E+      + +    VGQ VK RI+   P  + + +S  
Sbjct: 527 VKPGGCVVEFWDNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPEKQSMQVS-- 584

Query: 656 MKPTRVSEDDL------VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEH- 703
            K ++V+ + +      + LG LV+G +     D V    V    +     +  +P  H 
Sbjct: 585 CKLSKVAAEHVSGAYEGISLGDLVTGKIIDKRGDFVIEMTVGDVDLTGVVPRNLLPPSHK 644

Query: 704 ---LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
              + D LE   + K   +P              S++ L A   +I              
Sbjct: 645 KLRVGDKLECVVLAK---QPWM------------SSMTLGAHPDIIKGYHNKTLIKETPS 689

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
               V G+V N+ + G FV F G + G AP++   D        +Y   Q V+  +  VN
Sbjct: 690 VGQTVTGWVQNVNQHGVFVSFAG-VVGLAPQASLSD-------DSYDKFQVVKGRVTSVN 741

Query: 821 SE 822
            +
Sbjct: 742 GD 743



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 113/265 (42%), Gaps = 20/265 (7%)

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +T + +HG FV     + GF   S+L  D   + ++ Y VGQ +  RI++  P      L
Sbjct: 352 VTHVVQHGLFVELAENIPGFIHISKLA-DEKTDSTADYEVGQTLDARIIAFAPQDEMYVL 410

Query: 653 SF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
           S    +M    ++  DL   G  V G V    P   ++  ++  +    +P  HL D   
Sbjct: 411 SCEQSVMDAKYIATSDL-SAGDKVEGTVTRHLPKGGIIVALSS-FITAVVPAAHLVDAKM 468

Query: 710 HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSV 764
               +K   K G +    L L  +SS   ++ K SL N    LP D     AS I    +
Sbjct: 469 ANPELK--FKIGSKIKGRL-LGVDSSGCRMTIKKSLYN----LPKDDFISYASEI--GDI 519

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
             G V N+   GC V F      + P  +  +   AD++K   VGQ+V+  ILD+N E  
Sbjct: 520 GSGTVVNVKPGGCVVEFWDNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPEKQ 579

Query: 825 RITLSLKQSCCSSTDASFMQEHFLL 849
            + +S K S  ++   S   E   L
Sbjct: 580 SMQVSCKLSKVAAEHVSGAYEGISL 604



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G V  + + G F+ +   +DA+V ++NLSD ++   +K F IG++V GR++     S 
Sbjct: 1020 VKGVVTGIAA-GIFVAIGHGIDARVKITNLSDSFLMDWKKYFKIGQIVTGRIMG---FSD 1075

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +    +            I    +L VG    G ++R   YG+F+ I
Sbjct: 1076 KGLPDMSLKQRHMTGDKLIEGPQDLTVGQKYDGSVQRTTDYGVFVNI 1122



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 116/566 (20%), Positives = 232/566 (40%), Gaps = 121/566 (21%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGF--------APRSKAVDGQRADLSKTYYVG 809
            +I   S++ G + NI  T C V     L GF        A  +K  +G+  DLS     G
Sbjct: 90   NISVGSIILGRIVNIQSTACVVSLPNNLHGFVSCVQVSEALNAKIEEGEEFDLSDYVKEG 149

Query: 810  QSVRSNILDVNSETGRITLSL-KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
            Q VR++++D +++  R+ LSL  +      + S +  +  L+ ++     SK +      
Sbjct: 150  QWVRASVVDTSNK--RLGLSLLPKDVNRDIEDSDIDANMALQVEV----KSKED------ 197

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
             +G+++ + I+GK                    GFI    +    +  G ++ A +L + 
Sbjct: 198  -KGYVVATGIKGK-------------------KGFIKDTDV---ELNKGQIVLACVLRI- 233

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 988
                    S +T+ +D      + RQ +       +S   G   TV  +    + N  V+
Sbjct: 234  --------SGRTITLDTEHTGEAVRQLEDF-----SSAVAGTPVTV--VTTDKRNNGAVV 278

Query: 989  SLPEYNHSIGYASVSDYNTQKFPQKQFLNGQ-SVIATVMALPSSSTAGRLLLLLKAISET 1047
            S+        + SV D     F     L  + S +A V+A      +G+ +LL  A+   
Sbjct: 279  SV--------FGSV-DATIDPFQGSFGLEEKTSSVARVVATLDRGASGKRMLL-SALPHV 328

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
                    +   ++  G ++  ++T +    L ++      G IHI+++ D+K++     
Sbjct: 329  VNLEDADPRIGEAFLPGQVLGVKVTHVVQHGLFVELAENIPGFIHISKLADEKTDST--- 385

Query: 1108 FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
             +++++GQT+ ARIIA + + +M     + LS + S++    I +       D+S G +V
Sbjct: 386  -ADYEVGQTLDARIIAFAPQDEM-----YVLSCEQSVMDAKYIAT------SDLSAGDKV 433

Query: 1168 TGYVYKVDNEWALLTISRHL-KAQLFILDSAY----------EPSELQEFQRRFHIGKAV 1216
             G            T++RHL K  + +  S++            +++   + +F IG  +
Sbjct: 434  EG------------TVTRHLPKGGIIVALSSFITAVVPAAHLVDAKMANPELKFKIGSKI 481

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVGGRISKILSGVG 1275
             G +L ++      R+ ++           ++  D+  ++  E GDI  G +  +    G
Sbjct: 482  KGRLLGVDSSG--CRMTIKK-------SLYNLPKDDFISYASEIGDIGSGTVVNVKP--G 530

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSD 1301
            G VV+   +    +   E+    ++D
Sbjct: 531  GCVVEFWDNSQAWLPAGEVSEAFIAD 556


>gi|403160369|ref|XP_003320886.2| hypothetical protein PGTG_02908 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169528|gb|EFP76467.2| hypothetical protein PGTG_02908 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1187

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 152/642 (23%), Positives = 266/642 (41%), Gaps = 95/642 (14%)

Query: 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--------------- 255
           K+ L++    +  G+    +Q  M LT  VKSIED GYI+  G+                
Sbjct: 199 KVTLTIDPVHINSGIDKSDLQGRMTLTGAVKSIEDRGYIIDLGISVDSNVDSATSQASAN 258

Query: 256 SFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 307
           + T F+   +  + +G++ +         G +L   +  +        +S +   +S+ V
Sbjct: 259 NLTAFISFADATKATGVNHQDEPSLQWEVGQVLWCRINKLSENGATCMVSVNAQDISRSV 318

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILE-NGVMLSFLTYFTGTVDIFHLQNTFPT-TNWKN 365
                  +ID ++P  MVS  + S++   G+ ++ L +F  T+ + HL+    T  +   
Sbjct: 319 L--TAATNIDSILPLHMVSCLITSVIPGQGLNVTLLGFFKATIQVPHLECHSTTGVDLSE 376

Query: 366 DYNQHKKVNARILF-VDPTSRAVGLTLNPYLLHNR--------------AP--PSHVK-- 406
            +   +K+ AR+L+   P+   V L  N  LL  +               P  P+H++  
Sbjct: 377 KFKVGQKLRARVLWDTIPSKNHVSLEGNESLLGPKIFSLSIFDHVVKLDTPGLPTHLQNG 436

Query: 407 ---------------VGDIYDQSKVVRVDRGL-----------GLLLDIPSTPVSTPAYV 440
                          +G  +   ++ RVD              GL ++I   PV+     
Sbjct: 437 ERTRCDKIDQLLLYPIGYTFQTVRIFRVDEEWGVYATCVNGEDGLPIEI-DPPVAFAHIA 495

Query: 441 TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 500
            ISD     + K    YK G+  + R+ G   ++G+    L+ S  E       D+  G 
Sbjct: 496 AISDSFLSCLSKDSGPYKVGTTHKARVTGVSPVDGVLQLTLQPSVVEQAYMRSEDIPIGA 555

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
           ++ G +  + +   IV+  GG  A+    H S+ +   P KKF  GA++  RVL     R
Sbjct: 556 LMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPDR 615

Query: 561 --ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR--S 616
             I +T +KTLV++   I++SY  A+        ITK+E+    + F+   +G  PR  +
Sbjct: 616 DQIVLTLRKTLVRAD-EIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEA 674

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---VKLGSLV 673
           E G     +P  ++  G++VK +I++     RRI L+ + + T      L   + +G  V
Sbjct: 675 EAGYVESMKP--IFTPGRLVKVKIINVDVEKRRI-LASVKRSTSGEASKLSTVIDVGDQV 731

Query: 674 SGVVDVVTPNAVVVYVIAKGYS--------KGTIPTEHLADHLE-HATVMKSVIKPGYEF 724
           S  V V+  NA +   +    +        KG I  E LA   +     +K+ +K G E 
Sbjct: 732 SAFVTVIR-NAFIQLDLRHTNADPSSSEPVKGLISVEILAKKYDISPEALKNQLKAGDEV 790

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVV 765
             L+V   +    LL   Y   +  Q Q+      IH  ++V
Sbjct: 791 KDLIVHTKDKEKELLMVGYKSASIPQEQMTGPIRFIHDKNLV 832



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 16/215 (7%)

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV------SEDDLVKLGSLVSGVVDVV 680
           S  Y VG   K R+    P    + L+  ++P+ V      SED  + +G+L++G +  +
Sbjct: 509 SGPYKVGTTHKARVTGVSPVDGVLQLT--LQPSVVEQAYMRSED--IPIGALMNGTIKKL 564

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
           T   ++V +  +G     +  +H +D ++HA   K    PG +   ++L  + +   ++L
Sbjct: 565 TATNLIVRI--EGGHDAVVWPDHYSD-VKHAHPEKK-FAPGAKVKARVLYTNPDRDQIVL 620

Query: 740 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
           + + +L+  A ++ +        +     +  + E    + F G   G  PR++A  G  
Sbjct: 621 TLRKTLVR-ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYV 679

Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             +   +  G+ V+  I++V+ E  RI  S+K+S 
Sbjct: 680 ESMKPIFTPGRLVKVKIINVDVEKRRILASVKRST 714


>gi|195389266|ref|XP_002053298.1| GJ23416 [Drosophila virilis]
 gi|194151384|gb|EDW66818.1| GJ23416 [Drosophila virilis]
          Length = 1397

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 146/613 (23%), Positives = 266/613 (43%), Gaps = 70/613 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG  +L   + +  ++  +  F A +R + K  K K+K+ +    E  D L +    
Sbjct: 8   FPRGGIANL---QANAENSPSNIVFGASQRKIKKGPKPKEKQID---GEHSDQLQAF--- 58

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---I 170
                    A  +T   +   M + GVV   +   L I LPG +   A  AD  D    +
Sbjct: 59  --------SAETLTYDTLRDRMLVMGVVKAADATSLQIALPGRMTARALVADISDAYARV 110

Query: 171 LDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRK---IWLSLRLSLLYKGL 225
             + +  + +E + L  +F VGQ+V    +     K EI +R    + LSL+ + +   L
Sbjct: 111 AQSYMAGDGSEYHDLTVLFSVGQIVYGRAI-----KTEIPERNRMSLLLSLKPAEVNSSL 165

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
              ++++G + T  ++ I++HG ++  G+     F+P  + A+   I    G L+   V+
Sbjct: 166 HHASIKKGFIFTGAIEEIQEHGCVIETGIEGLQAFVPIADAAQQHHI----GQLIFLKVK 221

Query: 286 SIDR-----TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
            I       T + V L  D     K   K     ++D ++PG +V  +V   L+NG+  S
Sbjct: 222 QIQHSSAKSTCQCVRLDQD-----KLKIKSQNETNLDYILPGSIVKFKVIKHLKNGLEGS 276

Query: 341 FLT-YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN------- 392
            +   F G V+  HL     T     DY  +++  AR+L+V P ++ V LTLN       
Sbjct: 277 IMNESFRGYVNEHHLAEALHTP---PDYELNEEYLARVLYVMPLTKLVYLTLNLDINVTT 333

Query: 393 -PYLLHNRAPPSHVKVGDIYDQSKVVRVDR-GLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
               + +      +K G I ++++V+R    G+ LLL+     + +   +  +     + 
Sbjct: 334 EKTAMEDDEQQELLKKGSIVEKARVLRHGTGGIVLLLNHKHKGLISYGSIKSNHKGNYDQ 393

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
             +  KY   S  +VR+LG+  +E L      A+     ++T  D++ G +V+ +++  +
Sbjct: 394 DVVLAKYSSKSKHKVRVLGYDVIESLYYCTDDANILNEKLYTLEDLQAGDIVQARIVKPE 453

Query: 511 S-FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKK 567
           S  G      G V  +    H++      P  +++VG  L  RVL +   R    ++++ 
Sbjct: 454 SKIGGYNVKIGKVNGIIEQLHLA------PNMRYEVGQRLRCRVLDICLDRKICYLSNRN 507

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
             +   + +L+S   A    +  G + K E     V+F +G++G   +  L         
Sbjct: 508 EYLNKSVKLLTSLQSAQPGSLFTGTVVKCESSYVLVKFCSGIKGVLHKQRLNE----LIE 563

Query: 628 SMYHVGQVVKCRI 640
           S +  GQ  K RI
Sbjct: 564 STFFAGQTTKFRI 576


>gi|159489442|ref|XP_001702706.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
 gi|158280728|gb|EDP06485.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
          Length = 1280

 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 138/546 (25%), Positives = 221/546 (40%), Gaps = 109/546 (19%)

Query: 976  AIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSV--IATVMALPSSST 1033
            A V+  ++ + VL  P    S   A + DY  ++    Q L G  V     V  L     
Sbjct: 426  ATVDAARQRFTVLLRPSATASSDAAYLIDY-FREMAALQVLRGDEVKDFGLVADLDGHPD 484

Query: 1034 AGRLLLLLKA-ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI- 1091
             G + L LK  ++     ++   +       G+ V+A +  I+P E  L   +  H  + 
Sbjct: 485  VGLVELSLKPELTAAAKDAAASKEALRKLKPGTQVEAVVEGIRPGEY-LILSLPSHAHLL 543

Query: 1092 ---HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
                IT+ N  + + V   F+     Q V A ++ +    +  K  + +LS++PS L ++
Sbjct: 544  AYAAITDFNTPRPDAVPRKFT-----QVVEAVVLGRLQGGEGHKRGVMDLSLRPSRLAIA 598

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
                K   +   V +G  V G                  +   F+L    EP        
Sbjct: 599  R---KAEPQAPPVVLGDLVPGQ-----------------QLTCFVL----EP-------- 626

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
                G  V   VL++N +K  L L L P                      EG +V GRI 
Sbjct: 627  ----GAPVLARVLAVNAKKHTLDLSLAPLP-------------------AEGALVMGRI- 662

Query: 1269 KILSGVG-GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1327
              LS  G G+ V +GP   GRV  T++ +  V D L+G  EG +           V+ +V
Sbjct: 663  --LSASGAGVRVSLGPKRAGRVALTDIHDAAVPDALAGLTEGTY-----------VRVRV 709

Query: 1328 LEISRTVRGTFHVELSLRSS-------------------LDGMSSTNSSDLSTDVDTPGK 1368
            L       G F V LSLR S                           ++        P  
Sbjct: 710  LGKD----GDFAV-LSLRPSRGGAIAGAAGAAGAAAAAGGKKGKDAAAAKDQAAAAAPQP 764

Query: 1369 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1428
             L  +  +     + GYVK   +KG F+ L R  D ++ L NLSDG++E P   FP G  
Sbjct: 765  ELLDVSGVKVGDSLGGYVKRCDAKGVFVALDRYRDGRIKLGNLSDGFIEDPAAAFPPGCR 824

Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +  RV+++E    R+E++L+T+    +S + I +L+ L  G +V G+++RVE +G+F+ +
Sbjct: 825  LEARVVALE-ADGRLELSLRTAPRSGSSGAAIQSLAELKEGQLVSGRVRRVEKFGVFVEV 883

Query: 1489 ENTNLV 1494
            E  + V
Sbjct: 884  EGNSSV 889



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 134/633 (21%), Positives = 234/633 (36%), Gaps = 183/633 (28%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             +   +++ GYV N+     +VRFL  LTG A   +  D   ++  + +  GQSVR  + 
Sbjct: 367  EVSEGALLSGYVANVTGDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRCLVA 426

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
             V++   R T+ L+ S  +S+DA+++ ++F    ++A LQ                   V
Sbjct: 427  TVDAARQRFTVLLRPSATASSDAAYLIDYF---REMAALQ-------------------V 464

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            + G   E  DFG+V   + H DV                                LV+LS
Sbjct: 465  LRG--DEVKDFGLVADLDGHPDVG-------------------------------LVELS 491

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN-YLVLSLPEYNHS 996
            LK       ++A ++++A +K         L     V A+VE ++   YL+LSLP + H 
Sbjct: 492  LKPELTAAAKDAAASKEALRK---------LKPGTQVEAVVEGIRPGEYLILSLPSHAHL 542

Query: 997  IGYASVSDYNT-------QKFPQ-------KQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
            + YA+++D+NT       +KF Q        +   G+     VM L  S    RL +  K
Sbjct: 543  LAYAAITDFNTPRPDAVPRKFTQVVEAVVLGRLQGGEGHKRGVMDL--SLRPSRLAIARK 600

Query: 1043 AISET-------------------ETSSSKRAK------KKSSYDV--------GSLVQA 1069
            A  +                    E  +   A+      KK + D+        G+LV  
Sbjct: 601  AEPQAPPVVLGDLVPGQQLTCFVLEPGAPVLARVLAVNAKKHTLDLSLAPLPAEGALVMG 660

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1129
             I       +R+  G    GR+ +T+++D     V +  +    G  V  R++ K     
Sbjct: 661  RILSASGAGVRVSLGPKRAGRVALTDIHD---AAVPDALAGLTEGTYVRVRVLGKDGD-- 715

Query: 1130 MKKSFLWELSIKPSMLTVSEIGSKL------------------------------LFEEC 1159
                    LS++PS        +                                L +  
Sbjct: 716  -----FAVLSLRPSRGGAIAGAAGAAGAAAAAGGKKGKDAAAAKDQAAAAAPQPELLDVS 770

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQL--------FILDSAYEPSELQEFQRRFH 1211
             V +G  + GYV + D +   + + R+   ++        FI D A            F 
Sbjct: 771  GVKVGDSLGGYVKRCDAKGVFVALDRYRDGRIKLGNLSDGFIEDPAAA----------FP 820

Query: 1212 IGKAVTGHVLSINKEKKL---LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
             G  +   V+++  + +L   LR   R    G + +++          + EG +V GR+ 
Sbjct: 821  PGCRLEARVVALEADGRLELSLRTAPRSGSSGAAIQSL--------AELKEGQLVSGRVR 872

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
            ++      + V+    + G  H +EL +  V D
Sbjct: 873  RVEKFGVFVEVEGNSSVVGLAHISELADGAVKD 905



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           MA +  + +++  +  P   + +K + K +K  +      +D           FPRGG  
Sbjct: 1   MATAQYEKKRRQPQGQPATEQTAKPE-KTAKAAVTTTNGEED-----------FPRGGAD 48

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD---GISG 117
           +LT  ER ++     AE EA      K+ K KK +T +K     DD  + FG     + G
Sbjct: 49  ALTALERKQLAEAAKAEVEAEFA-EGKQQKSKKPRTGKKGE---DDEDAFFGRQAASLEG 104

Query: 118 KLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
           K+ ++   + +KN+S G KLWG+V EV  + LVI LP GLRG
Sbjct: 105 KMAKHVELLRVKNLSVGTKLWGMVLEVTPRGLVISLPHGLRG 146



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 110/252 (43%), Gaps = 46/252 (18%)

Query: 436 TPAYVTISDVAEEEVRKLE------KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 489
            PA+  +++  E +V+  E      KK+K G+ +  R++G+R ++G+AT  ++ S     
Sbjct: 229 APAFCHVANALETKVKPEEAAADMTKKFKAGAKLPARVIGYRLMDGMATVTVRPSQV--- 285

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF------ 543
                    G  V+ +V+  ++  A    P           ++  E   PG ++      
Sbjct: 286 ---------GEKVEARVL--EALLAPKAAP-----------LASLEAAVPGGRYSGLVTG 323

Query: 544 ---KVGAELVF---RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
              ++G  + F    V    +  + +   +T  +   ++  ++ E ++  +  G++  + 
Sbjct: 324 FHDRLGVFVTFFGGVVGAAAAAELGLQPGQT-AQDVFSVGQAFGEVSEGALLSGYVANVT 382

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
               +VRF  G+ G A   +L       P  ++  GQ V+C +++++ A+R+   + +++
Sbjct: 383 GDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRC-LVATVDAARQ-RFTVLLR 440

Query: 658 PTRVSEDDLVKL 669
           P+  +  D   L
Sbjct: 441 PSATASSDAAYL 452



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 92/230 (40%), Gaps = 59/230 (25%)

Query: 501 VVKGKVIAVDSFGAIVQF-------PGGVKALCPLPHMSEFEIVKP-------GKKFKVG 546
           V K +V+ VD+F              G   A C + +  E + VKP        KKFK G
Sbjct: 201 VRKAEVMRVDAFAGPGLLLRLPGLPEGPAPAFCHVANALETK-VKPEEAAADMTKKFKAG 259

Query: 547 AELVFRVLGVK--SKRITVTHK-------------KTLVKSKLAILSSYAEATDRLITHG 591
           A+L  RV+G +      TVT +             + L+  K A L+S   A       G
Sbjct: 260 AKLPARVIGYRLMDGMATVTVRPSQVGEKVEARVLEALLAPKAAPLASLEAAVPGGRYSG 319

Query: 592 WITKI-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            +T   ++ G FV F+ GV G A  +ELGL PG     ++ VGQ                
Sbjct: 320 LVTGFHDRLGVFVTFFGGVVGAAAAAELGLQPGQTAQDVFSVGQAF-------------- 365

Query: 651 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                     VSE      G+L+SG V  VT +AV V  +A    +  +P
Sbjct: 366 --------GEVSE------GALLSGYVANVTGDAVYVRFLAGLTGRAGLP 401


>gi|294941146|ref|XP_002783028.1| programmed cell death protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239895225|gb|EER14824.1| programmed cell death protein, putative [Perkinsus marinus ATCC
           50983]
          Length = 1786

 Score =  110 bits (274), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 208/857 (24%), Positives = 354/857 (41%), Gaps = 121/857 (14%)

Query: 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLP----GGLRGLARAADALDPILDNEIEA 177
           + + IT K++  G ++   + +++   L++ LP    G ++G++   D  D I  +  + 
Sbjct: 41  HVSSITYKDLKVGTQVMAAIQDISPDALILDLPFNKMGIVKGISNMVDE-DDISKHMKQG 99

Query: 178 N---EDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGM 234
           N   +       F  GQLV+  V+  D   +E     I LSL  S+L  GL+ +T++  M
Sbjct: 100 NVALKSFKAQHRFRRGQLVTAAVIANDGSGRE---GSIQLSLLPSVLNAGLTSKTMKPHM 156

Query: 235 VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-AENSGIDVKPGL--LLQGVVRSID--- 288
            L A V + E HGY+L FG+   TGFL ++ L A    ++   G+  LL+   R  D   
Sbjct: 157 WLPATVLTEEAHGYVLSFGIDGVTGFLKKSELPAPTDKVETTKGVNPLLEMSARDNDAPE 216

Query: 289 ----RTRKVVY---LSSDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
               R   +VY   L +DP   T  +C  K       D +        +  S    G+ +
Sbjct: 217 AEQMRLGTLVYVRVLDNDPSNKTSLQCSAKAGNVEESDRI----GAPKKKASKKSAGIQV 272

Query: 340 SFLTYFTGTVDIFHL-------QNTFPTTNWKNDYNQHKKVNARILFV--DPTS--RAVG 388
            F+    G V   HL        +   TTN K      + V AR+L V  DP+S  RAV 
Sbjct: 273 DFMGPLKGVVHQHHLLHPILNDTDVTMTTNLK----VGQSVTARVLAVLADPSSHTRAVY 328

Query: 389 LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
           LTL P L+  +   S V+ G   + ++V+ V             P     +V   ++   
Sbjct: 329 LTLLPNLIQWKGIKSQVEAGTTIEAARVIDV------------IPKDCTRFVAGGNLMVA 376

Query: 449 EVRKLEKKYKE----GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
              +    Y++    G    VR LG   LE       +       V     V  GMV   
Sbjct: 377 HATRCSLPYRQPGAVGKKTDVRALGSNLLEMSVQVSAEEKVLAASVVNLQQVSAGMVFDK 436

Query: 505 KVIA--VDSFGAIVQFPGGVKALCPLPHMSEFEIVK--PGKKFKVGAELVFRVLGVKS-- 558
            VI    +  G IV     V    P    ++    +  P +  +  AE+  RVL V    
Sbjct: 437 AVIEHFDNEKGLIVSLSDFVTGRVPKEQCTDQGNQRKLPKRYAEEKAEIRVRVLNVDPVR 496

Query: 559 KRITVTHKKTLV----KSKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQGFA 613
           +++T+T KK+LV    +     L   A+A+   +  G+++KI  H GC V+F+    G  
Sbjct: 497 RQVTLTAKKSLVGRPDEEVPRALIRNADASVGDVVVGYVSKILDHGGCIVKFFGEAFGLL 556

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMS--SIPASRRINLSFMMKPTRVSEDDLVKLGS 671
           P     +  GC      H G +VK R++S    P   R+ L  +      +  ++ K+G 
Sbjct: 557 PI----VTEGCA-----HEGALVKVRVVSKNDSPKGTRLRLQQVNSMEDSTMGEITKVGD 607

Query: 672 LVS----GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKPG----Y 722
           +++       D  +     V +   G +   +P   LAD  + A  VM+ V K      +
Sbjct: 608 VLTVETIEGADKCSGGRQCVKIRCVGGTDVLVPVMQLADDPDMAVAVMERVEKKEDLQHF 667

Query: 723 EFDQLLV--LDNESS-------NLLLSAKYS--LINSAQQLPSDASHIHPNSVVHGYVCN 771
              ++LV  + N+ +        L+   KY   L  S +++P   S +     + G+V N
Sbjct: 668 PLAKVLVTAVMNDGTVEGTCKPVLVEDEKYRELLGISQEEIP---SKVKVGEGLVGFVSN 724

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DVNSETGRITLSL 830
           +   G FVR +G +TG  P+ K  +G   ++S+   VGQ+V + ++  V++E     + +
Sbjct: 725 VTTFGAFVR-VGGVTGLVPKPKLAEGFVEEVSEAVEVGQTVTTAVVSSVDAERNMFKMDM 783

Query: 831 KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII---GSVIEGKVHESND 887
           +    ++      +E      K+ +           KW+    I   G V++ KV +   
Sbjct: 784 QPRAVAAVSELSAREELRAAAKLRL----------EKWLGSGRIPQRGQVVDAKVGKKKP 833

Query: 888 FGVVVSFEEHSDVYGFI 904
           +G ++   +     G +
Sbjct: 834 YGWMLELTKFEAAAGLL 850



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 98/241 (40%), Gaps = 41/241 (17%)

Query: 1257 IHEGDIVG-GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
            + EG +V   R+S   S     +V++     GR+H T   +   ++PLS    G   P  
Sbjct: 1065 VKEGSVVTTARVSSHKSAAIQRIVELPGGHKGRLHATMACDDWRANPLSPLTPGMLAP-- 1122

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
                        L +     G    EL L+S    +S  +   L              +D
Sbjct: 1123 -----------ALLVVSLGSGRTPTELCLKS----ISRAHVKGLPKGA----------KD 1157

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE--KEFPIGKLVAG-R 1432
            L     V GYV +V+S G F+ LS  L  +VLL N+++  V   E  K +P+G  V    
Sbjct: 1158 LKEGGKVSGYVASVSSSGVFVALSPWLTGRVLLGNVAEHPVTPEEAGKLYPVGTSVRDIA 1217

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR--VESYGLFITIEN 1490
            + SV+    RV + +   D         + ++ +  G I+ GQ+ R   E  GLF+ I  
Sbjct: 1218 ITSVDVTKNRVGLAIVNKDK--------SQITEIEEGAIMYGQVSRKDKEGKGLFVRISG 1269

Query: 1491 T 1491
            T
Sbjct: 1270 T 1270


>gi|21355217|ref|NP_651245.1| CG5728 [Drosophila melanogaster]
 gi|16769580|gb|AAL29009.1| LD41803p [Drosophila melanogaster]
 gi|23172158|gb|AAF56280.2| CG5728 [Drosophila melanogaster]
          Length = 1430

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 161/684 (23%), Positives = 293/684 (42%), Gaps = 62/684 (9%)

Query: 116 SGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL 171
           +G+L  + A  + +  +   M + GVV E+    L I LPG +     +A  +DA   + 
Sbjct: 55  NGQLEAFSAETLNMDTLQEDMLVMGVVKELTATALQIALPGRMFARTLVADISDAYTRVA 114

Query: 172 DNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 229
              +  + +E + L  +F +G++V    ++   +K + G+  + LSL+ + ++  L  ++
Sbjct: 115 KAAMSGDTSEYHDLTELFQLGRIVYGKAIK--TEKLDTGRVSLLLSLKPADVHGNLHHKS 172

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 289
           +++G + +  V    +HGY++  G+     F+P    A+   +     L ++ V     +
Sbjct: 173 IKKGFIFSGAVAEALEHGYVIESGVQGLQAFVPCEKPAQKLHVGQLAFLKVKTVHHDTHQ 232

Query: 290 -TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTG 347
            T   V +  D     +   K     ++D ++PG +V  +V   L++G+  S +   F+ 
Sbjct: 233 STCTCVQVEQD-----QLRIKSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSA 287

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH--- 404
            V+  HL N   T    + Y  ++  NAR+L+V P ++ V LTLN  +    A       
Sbjct: 288 YVNEHHLANALDTL---DAYELNEDYNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDQDE 344

Query: 405 -------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--K 455
                  +KVG + +++KV+R+  G G++L +        +Y +I    +    K E   
Sbjct: 345 EEQEVEPIKVGSVVEKAKVLRLGSG-GVVLLLNKKLKGIISYGSIRGNFKGNYDKDEVLS 403

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFG 513
           KY   +  +VRILG+  +E L       +     +F   D+  G +V            G
Sbjct: 404 KYGRKTKHKVRILGYDVIESLYYCSDDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKG 463

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK 571
             V+  G V  +     + +F +  P  ++ VG  L  RVL V ++R    V+++   + 
Sbjct: 464 WSVRI-GKVNGI-----LEQFYLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLG 516

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
             + IL+ YA A    +  G + + E     V+F NG++G   R  L      E SS + 
Sbjct: 517 KGIKILTDYASAHVGNVYMGTVVRCEDTYVLVKFGNGIKGVLHRQNLK-----ENSSFFE 571

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVI 690
            GQ  K RI++      +I L+      ++ E   V++ + +   ++V +T  A      
Sbjct: 572 -GQTTKFRILTR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEVKITFAAEDDEED 628

Query: 691 AKGYSK-----GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
             G  K     G IP   L+DHLE       V   G   D   ++ N  S  L    Y  
Sbjct: 629 EDGNPKLEEFVGLIPLRLLSDHLELLHAQMRVHPAGSYTDAACIMQNIFS--LRDVPY-- 684

Query: 746 INSAQQLPSDASHIHPNSVVHGYV 769
              + QL  D   +    ++  YV
Sbjct: 685 --FSGQLTKDWQSVQVGDIIRSYV 706


>gi|302779850|ref|XP_002971700.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
 gi|300160832|gb|EFJ27449.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
          Length = 479

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 165/372 (44%), Gaps = 82/372 (22%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            +L  N  I +TV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 42   SLRGNVHITETVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFET-VTIE 100

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
            Q V  YV +V + W  L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+N
Sbjct: 101  QSVIRYVQEVKDNWTWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSVN 160

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG---------GRISKILSGV- 1274
             E+K + L L P     SDK       ++Q FI+ G +           G++   LSG  
Sbjct: 161  HERKQVDLSLHP---KTSDK--QFKKGDLQ-FIYRGTVRKVLDLKRPGRGKMGLELSGFV 214

Query: 1275 -----GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FDPLSGYDEGQ 1321
                  G  V + P L  R+    L N  V +P   +  G+         +PLSG     
Sbjct: 215  KNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPSGKVISGRILSIEPLSG----- 269

Query: 1322 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1381
                             H+E+SL       ++T S D S             +      I
Sbjct: 270  -----------------HIEMSL-------TATTSQDSSG-----------WKKFGAGEI 294

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDA---KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
            V G + N+ + G FI L++   A    +L+SNLS  Y         +G+ V  ++L V+ 
Sbjct: 295  VSGRIHNIEAFGIFISLAKSDVASSLSILVSNLSTLY--------KVGQWVQVKILKVDA 346

Query: 1439 LSKRVEVTLKTS 1450
             +KR+ + +K S
Sbjct: 347  ETKRISLGMKVS 358



 Score =  100 bits (249), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 86/133 (64%), Gaps = 12/133 (9%)

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
            D+  PG+    +E       + G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P +
Sbjct: 197  DLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE 249

Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1481
             FP GK+++GR+LS+EPLS  +E++L  + S+ +S            G+IV G+I  +E+
Sbjct: 250  MFPSGKVISGRILSIEPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEA 304

Query: 1482 YGLFITIENTNLV 1494
            +G+FI++  +++ 
Sbjct: 305  FGIFISLAKSDVA 317



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 31/263 (11%)

Query: 225 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGID-----VKPGL 278
           ++ ETV     +  YV+ ++D+   L    P   G L   + +++ S ++      K G 
Sbjct: 92  ITFETVTIEQSVIRYVQEVKDNWTWLVLS-PHLKGCLFILDTSDDPSELERFKERFKVGD 150

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK-DLKGIS-------IDLLVP-----GMMV 325
             Q  +RS++  RK V LS  P T  K   K DL+ I        +DL  P     G+ +
Sbjct: 151 PFQCHIRSVNHERKQVDLSLHPKTSDKQFKKGDLQFIYRGTVRKVLDLKRPGRGKMGLEL 210

Query: 326 STRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR 385
           S  V+++ E G  +         + + +L N+F   N    +   K ++ RIL ++P S 
Sbjct: 211 SGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSF-VQNPAEMFPSGKVISGRILSIEPLSG 269

Query: 386 AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
            + ++L      + +       G+I   S  +      G+ + +  + V++   + +S+ 
Sbjct: 270 HIEMSLTATTSQDSSGWKKFGAGEIV--SGRIHNIEAFGIFISLAKSDVASSLSILVSN- 326

Query: 446 AEEEVRKLEKKYKEGSCVRVRIL 468
                  L   YK G  V+V+IL
Sbjct: 327 -------LSTLYKVGQWVQVKIL 342


>gi|195111152|ref|XP_002000143.1| GI22689 [Drosophila mojavensis]
 gi|193916737|gb|EDW15604.1| GI22689 [Drosophila mojavensis]
          Length = 1396

 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 136/588 (23%), Positives = 251/588 (42%), Gaps = 60/588 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAE-----FEAVERGLHKKNKKKKKKTERKANETVDDLG 108
           FPRGG  +L         A  D+      F A +R + K  K K+K  E    E  D L 
Sbjct: 8   FPRGGIANL--------QANTDSSTSNLIFGATQRKIKKAPKLKEKPVE---GEKGDQLQ 56

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
           +             A  +T   +   M + GVV   +   L I LPG +   A  AD  D
Sbjct: 57  AF-----------SAETLTYDTLQENMLVMGVVKATDATSLQIALPGRMTARALVADISD 105

Query: 169 P---ILDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
               +  + +  +++E   L  +F+VGQ+V    ++   D  E  +  + L+L+ S +  
Sbjct: 106 AYGRVAQSYMAGDSSEYRDLTALFNVGQIVYGRAIKTRKDS-ESKRMSLLLTLKPSEVNS 164

Query: 224 GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
            L    +++G +    ++ I++HG ++  G+     F+P  N A+   I     L ++ +
Sbjct: 165 SLHHANIKKGFIFVGAIEEIQEHGCVIETGIDGLQAFVPIENAAQKHHIGQLIFLKVKQI 224

Query: 284 VRSIDR-TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
               D+ T + V +  D     K   K     ++D ++PG +V  +V   L+NG+  S +
Sbjct: 225 QHDSDKSTCQCVCIEQD-----KLKIKSQHETNLDYILPGSIVKFKVTKHLKNGLEGSIM 279

Query: 343 T-YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-LHNRA 400
              F G V+  HL     +     DY  +++  AR+L+V P ++ V LT N  + +H   
Sbjct: 280 NEAFRGYVNEHHLAEALQSP---QDYEVNEEYLARLLYVMPLTKLVYLTFNLNITVHPEQ 336

Query: 401 PPSH----VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK--LE 454
           P S     +K G I ++++V+R   G G+++ +        +Y +I    +    +  + 
Sbjct: 337 PESEGEELLKKGSIVEKARVLRHGTG-GIVVLLNHKYKGLISYGSIKSNFKGNYDQDVVL 395

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD-SFG 513
            KY   S  +VR+LG+  +E L       +     ++T  D++ G +V  +++  D   G
Sbjct: 396 AKYSSKSKHKVRVLGYDVIESLYYCTDDPNVVNEKMYTLEDIQTGDIVSARIVKPDPKIG 455

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK 571
                 G V  +     ++      P  +++VG  +  RVL +   R    ++ +   + 
Sbjct: 456 GYSVKIGKVNGIIEQLQLA------PNTRYEVGQRVRCRVLEISLDRKICYLSSRNEYLS 509

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
             + +L+S   A    +  G + K E     V+F  G++G   +  L 
Sbjct: 510 KGIKLLTSLQLAQPGHVFTGTVVKCEASYVLVKFCGGIKGVLHKQRLN 557



 Score = 40.8 bits (94), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 25/130 (19%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY---------VESPEKE---- 1422
            L  NM+V G VK   +    I L  ++ A+ L++++SD Y          +S E      
Sbjct: 68   LQENMLVMGVVKATDATSLQIALPGRMTARALVADISDAYGRVAQSYMAGDSSEYRDLTA 127

Query: 1423 -FPIGKLVAGRVLSV--EPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIVIGQI 1476
             F +G++V GR +    +  SKR+ + L      T   SE+N+    +N+  G I +G I
Sbjct: 128  LFNVGQIVYGRAIKTRKDSESKRMSLLL------TLKPSEVNSSLHHANIKKGFIFVGAI 181

Query: 1477 KRVESYGLFI 1486
            + ++ +G  I
Sbjct: 182  EEIQEHGCVI 191


>gi|302779838|ref|XP_002971694.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
 gi|300160826|gb|EFJ27443.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
          Length = 429

 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 40/240 (16%)

Query: 1105 ENLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
            EN    + +GQTV A+I++K       + + + +LS++PS L  ++    ++  E  V I
Sbjct: 50   ENPLRKYSVGQTVRAKILSKRKTSRKHRNAGILDLSLRPSELAGNDAACSVITFE-TVII 108

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
             Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+
Sbjct: 109  EQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSV 168

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG-------- 1275
            N E+K + L L P       KT D           +GD++G R+++  +G G        
Sbjct: 169  NHERKQVDLSLHP-------KTSDEQ-------FKKGDLLGRRMTRFFAGRGKMGLELSG 214

Query: 1276 --------GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FDPLSGYDE 1319
                    G  V + P L  R+    L N  V +P   +  G+         +PLSG+ E
Sbjct: 215  FVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIE 274



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 36/259 (13%)

Query: 1208 RRFHIGKAVTGHVLSINKEKK------LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
            R++ +G+ V   +LS  K  +      +L L LRP +   +D    +     +T I E  
Sbjct: 54   RKYSVGQTVRAKILSKRKTSRKHRNAGILDLSLRPSELAGNDAACSVIT--FETVIIEQS 111

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP--LSGYDEGQFDPLSGYDE 1319
            ++   + ++      LV  + PHL G +   +  +    DP  L  + E        +  
Sbjct: 112  VIR-YVQEVKDNWAWLV--LSPHLKGCLFILDTSD----DPSELERFKER-------FKV 157

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G   +C +  ++   +    V+LSL           S +     D  G+ + +       
Sbjct: 158  GDPFQCHIRSVNHERK---QVDLSLHPK-------TSDEQFKKGDLLGRRMTRFFAGRGK 207

Query: 1380 MIVQ--GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
            M ++  G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+E
Sbjct: 208  MGLELSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIE 267

Query: 1438 PLSKRVEVTLKTSDSRTAS 1456
            PLS  +E++L  + S+ +S
Sbjct: 268  PLSGHIEMSLTATTSQDSS 286


>gi|194909767|ref|XP_001982005.1| GG12355 [Drosophila erecta]
 gi|190656643|gb|EDV53875.1| GG12355 [Drosophila erecta]
          Length = 1433

 Score =  107 bits (267), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 144/625 (23%), Positives = 272/625 (43%), Gaps = 58/625 (9%)

Query: 116 SGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPIL 171
           +G+L  + A  + +  +   M + GVV E     L I LPG +      AD   A   + 
Sbjct: 55  NGQLEAFSAETLNMDTLQEDMLVMGVVKEATATALQIALPGRMFARTMVADISEAYTRVA 114

Query: 172 DNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLSLLYKGLS 226
              +  + +E + L  +F VG++V    +     K E+   G+  + LSL+ + ++  L 
Sbjct: 115 KAAMSGDTSEYHDLTELFQVGRIVYGKAI-----KTEMLGTGRVSLLLSLKPADVHGSLH 169

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
            +++++G + +  V  I++HGY++  G+     F+P    A+   +     L ++ V   
Sbjct: 170 HKSIKKGFIFSGAVAEIQEHGYVIESGVQGLQAFVPCEEPAQKLHVGQLAFLKVKNVHHD 229

Query: 287 IDR-TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-Y 344
             + T   V +  D     +   K     ++D ++PG +V  +V   L++G+  S +   
Sbjct: 230 THQSTCTCVQVEQD-----QLRIKSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNES 284

Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 404
           F+  ++  HL N   T    + Y  ++  NAR+L+V P ++ V LTLN  +    A    
Sbjct: 285 FSAYINEHHLTNALDTL---DAYELNEDYNARVLYVMPLTKLVYLTLNLDMKTGVAAEKD 341

Query: 405 ----------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 454
                     +KVG + +++KV+R+  G G++L +        +Y +I    +    K E
Sbjct: 342 QNEEEQEEEPLKVGTVVEKAKVLRLGSG-GVVLLLNKKLKGIISYGSIRANFKGNYDKDE 400

Query: 455 --KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
              KY   +  +VRILG+  +E L       +     ++   D+  G +V  K+   D  
Sbjct: 401 VLSKYGRKTKHKVRILGYDIIESLYYCSDDPNVVSEKLYCLEDITAGDLVTAKIFKRDD- 459

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 570
               +  G    +  +  + E   + P  ++ VG  L  RVL V ++R    V+++   +
Sbjct: 460 ----KIKGWSVKIGKVNGILEQFYLAPNVRYDVGQSLKCRVLEVNAERKICYVSNRSEYL 515

Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
              +  L+  A A    +  G + + E +   V+F NG++G   R  L      + S+ +
Sbjct: 516 GKGIKFLTDIASAHVGNVYMGTVVRCEDNYVLVKFGNGIKGVLHRQNL------KESNSF 569

Query: 631 HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYV 689
             GQ  K RI++      +I L+      ++ E   V++ + +   ++V +T  A     
Sbjct: 570 FEGQTAKFRILTR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEVKITYAADDDEE 627

Query: 690 IAKGYSK-----GTIPTEHLADHLE 709
              G  K     G IP   L+DH+E
Sbjct: 628 DEDGNPKLEEFMGLIPLRLLSDHME 652


>gi|332030070|gb|EGI69895.1| Protein RRP5-like protein [Acromyrmex echinatior]
          Length = 1313

 Score =  106 bits (265), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 206/443 (46%), Gaps = 26/443 (5%)

Query: 284 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
           ++++D    V+ LS+    +      D+  +S+D+L PG  +S  V  +L NG+ + F  
Sbjct: 142 IKTVDNM-SVIKLSTKRKKIDSANVHDI--MSLDVLTPGTKLSLYVTKVLSNGLQVRFGK 198

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 403
              G ++  +L N   T      Y  + +V   +L++ PT +    +L    L + +   
Sbjct: 199 NNVGYINRIYLNNPLST------YVDNMEVIGTLLYILPTVKLAYFSL----LTDISEKE 248

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
            + VG+I + ++V+  +   G++  +  + +     +  ++V      K+  ++KE S  
Sbjct: 249 KLPVGNIINNARVLYRESS-GIIFKLSKSGLRGYISLRRTNVP---FTKIPIEFKESSTH 304

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG-V 522
           + R+L +  +E      ++    +   F+ SD+  G ++   ++ +++  + +    G +
Sbjct: 305 KCRVLAYNWMEHFYVCTMEEEILKQKYFSASDLSIGDILTVTIVHIETSRSNIHVQAGKI 364

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYA 581
             + P+ H+S+  +     K KVG  +  RVL   K  ++  T K++LVKSKL +L  + 
Sbjct: 365 CGIVPMEHISDSGL-SALHKLKVGDNVEARVLDKNKINQVKFTLKQSLVKSKLPVLHDFG 423

Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
           EA   L  HG I  I K+G  VRFY  ++G+ PR  L  D   + +  + VGQ V   + 
Sbjct: 424 EAKCGLKYHGTIGIINKNGMLVRFYGIIKGWVPRITLNSD-TYDMNWNFSVGQTVTVCVE 482

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK---GT 698
           S      R+ L  + +  + S    + +G ++ G V   +   + + +  +       G 
Sbjct: 483 SVEKDQCRMTLRIVSEKEKQSIS--LSIGDIIEGTVSESSIKGIYLKIQKEDNENVVTGF 540

Query: 699 IPTEHLADHLEHATVMKSVIKPG 721
           +P+ H+A  +E  +++ S   PG
Sbjct: 541 LPSGHMAPCIEVGSLLASRCSPG 563



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 39/229 (17%)

Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
           G +P EH++D    A      +K G   +  ++  N+ + +  + K SL+ S   +  D 
Sbjct: 366 GIVPMEHISDSGLSAL---HKLKVGDNVEARVLDKNKINQVKFTLKQSLVKSKLPVLHDF 422

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
                    HG +  I + G  VRF G + G+ PR   ++    D++  + VGQ+V   +
Sbjct: 423 GEAKCGLKYHGTIGIINKNGMLVRFYGIIKGWVPRI-TLNSDTYDMNWNFSVGQTVTVCV 481

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
             V  +  R+TL +                   +EK ++  S               IG 
Sbjct: 482 ESVEKDQCRMTLRIVSE----------------KEKQSISLS---------------IGD 510

Query: 877 VIEGKVHESNDFGVVVSFEEHSD---VYGFITHHQLAGATVESGSVIQA 922
           +IEG V ES+  G+ +  ++  +   V GF+    +A   +E GS++ +
Sbjct: 511 IIEGTVSESSIKGIYLKIQKEDNENVVTGFLPSGHMA-PCIEVGSLLAS 558


>gi|452821025|gb|EME28060.1| rRNA biogenesis protein rrp5 [Galdieria sulphuraria]
          Length = 1832

 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 123/534 (23%), Positives = 248/534 (46%), Gaps = 85/534 (15%)

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS- 1032
            +  IV ++KE YL++ +P+ N+ + Y +  D   +           SVI +V ++   + 
Sbjct: 933  LRGIVLLIKEEYLIMRIPQLNNCLVYLTSWDPRVRA--------NLSVIYSVDSVIEGTV 984

Query: 1033 --TAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL---KFGIGF 1087
               + RL +L+   +  E     + +   +  VG  V   I  I  + L L   ++ +  
Sbjct: 985  YYCSERLTMLVAMDANDE-----KKRMIENVQVGDHVIGRIVRISTVHLHLFIPRYSV-- 1037

Query: 1088 HGRIHITEVNDD--KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
            +GRIH +++  +  K  ++  L  +F+IGQ V A+IIAK +    KK  + +L++  + +
Sbjct: 1038 YGRIHCSQIMSEPGKDTLISPL-EHFEIGQQVEAKIIAKDHS---KKYQILDLTLNKNDV 1093

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1201
               E   K L +  ++S  Q +TG+V+K+  +  L++ S      +K   F  +     S
Sbjct: 1094 VTME---KNLVDWSNLSCRQCLTGFVHKIMTDKVLISFSSKVIGVMKRWGFTQNEQLLSS 1150

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
              ++       G+ +   ++ +N+ +KLL + L                  +   +H GD
Sbjct: 1151 --KQIFSSLRTGQPLHCTIIRLNQSRKLLEVAL----------------SELVKPVHVGD 1192

Query: 1262 IVGGRISKILSG------VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
             V   + ++L G      +   V        G + FT++ +         +D      +S
Sbjct: 1193 SVVAHVGQVLYGAEFCLELPKWVEWSLSTCRGVLSFTDIDD--------NFDRAT-AKIS 1243

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK-HLEKIE 1374
                 +++K  ++E S           S++     + S  +SD      TP     + + 
Sbjct: 1244 HIKSRKWIKGIIIECS-----------SVKEKPIAIVSLRNSDAHPTQSTPKDIRWKNLM 1292

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            DL    +V+G++++ + KGCF+ LS  +  +V+L NLSDG+V++ E+ FP+G+LV  +V+
Sbjct: 1293 DLKAGQLVRGFIRHHSLKGCFVQLSSSIIGRVMLRNLSDGFVQNVEETFPLGQLVTAKVI 1352

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             ++  + +VE++L+ SD   + +  I   S L  G  + G +K ++ +G+F+++
Sbjct: 1353 DIQ--NGQVELSLRESD--LSDRQTI--YSVLQKGLRLQGTVKNIQPFGIFVSL 1400



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 146/581 (25%), Positives = 250/581 (43%), Gaps = 91/581 (15%)

Query: 232 EGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 289
           +G ++   +   E++GY + FGL S  + GFLP   L E     +K G L+  +V     
Sbjct: 201 KGCLVYGMIYEREEYGYRVTFGLESIQYDGFLP---LEETESQILKSGSLIXQLVCD--- 254

Query: 290 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 349
             K+ Y S  P     CV   L+       + G ++  + +    +  + S +T F  ++
Sbjct: 255 -SKISYQSKWP---FGCVFPGLR-------MEGQVLQKKWKGSWTHIKLASNMTGFVYSM 303

Query: 350 DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP---PSHVK 406
           +   ++ +F              ++ R++FVD   R + L+    L+    P   P+  K
Sbjct: 304 ET--IRESF--------------LDLRVIFVDVGKRVIYLSSVESLVGFLEPAKLPNAWK 347

Query: 407 VGDIYDQSKVVRVDRGL----GLLL------DIPSTPVSTPAYVTIS-DVAEEEVRKLEK 455
           +G+I    K V V+  L    G+LL       I   P S  A   IS D A   +  L+ 
Sbjct: 348 LGNIL---KNVIVEGHLSSPKGILLRHSESNTILFAPNSQLADSDISADAALSSLPSLQ- 403

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
                S V  RI+ F  L+G     +K S     + +  ++ PGM V+ K+ +V   G +
Sbjct: 404 -----SIVCCRIVAFSPLDGTIIVSMKPSILSKTIVSFDELHPGMPVQCKIESVRENGCL 458

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 573
                 ++A  P  H  +    +   KF  G ++   VL +   S R T+T KK  + ++
Sbjct: 459 CIVEDKIRAWIPQMHFGDTVGARLKNKFVAGKKVKGCVLSIFQDSHRCTITTKKKFIDNQ 518

Query: 574 LAILSSYAEATDRLITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLD--PGCEP-S 627
             +++S  +A   + +  +    +     G  V F+ GV+GF P S +GL+  P  E  S
Sbjct: 519 YPVIASIQDAKSNIGSAAYCCVYQVSSSRGLQVEFFQGVKGFLPVSYMGLEKLPSLEWLS 578

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD---LVKLGSLVSGVVDVVTPNA 684
             Y VG+ +K  I+S    S RI +S  +    +  DD   +V  G+    +V +   N 
Sbjct: 579 ENYPVGKTLKVWILSVHEESHRIIVS--LSRDVIMNDDSSAIVTYGA----IVGIEYGNL 632

Query: 685 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-------FDQLLVLDNE-SSN 736
           +V   +     +  +P EHL+D    +  + S++   +E        +Q+++L +  SSN
Sbjct: 633 IVEVCLLDSRKRALLPKEHLSDFAYLSERIYSLLVSYFESNSSSLPLEQVVILRSRISSN 692

Query: 737 ---LLLSAKYSLINSAQQLPS-----DASHIHPNSVVHGYV 769
               L+S K SLI  A   PS       S    N ++ G+V
Sbjct: 693 DCRALVSLKRSLIQFALTYPSLSSDRICSEWKANQMLPGFV 733



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 155/363 (42%), Gaps = 36/363 (9%)

Query: 515  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 574
            I+  PG    + PL H   FEI +     +V A+++ +    K + + +T  K  V +  
Sbjct: 1046 IMSEPGKDTLISPLEH---FEIGQ-----QVEAKIIAKDHSKKYQILDLTLNKNDVVTME 1097

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS----SMY 630
              L  ++  + R    G++ KI      + F + V G   R     +     S    S  
Sbjct: 1098 KNLVDWSNLSCRQCLTGFVHKIMTDKVLISFSSKVIGVMKRWGFTQNEQLLSSKQIFSSL 1157

Query: 631  HVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 687
              GQ + C I+  +  SR+   + LS ++KP  V +  +  +G ++ G    +     V 
Sbjct: 1158 RTGQPLHCTIIR-LNQSRKLLEVALSELVKPVHVGDSVVAHVGQVLYGAEFCLELPKWVE 1216

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL------LLSA 741
            + ++    +G +    + D+ + AT   S IK       +++   E S++      ++S 
Sbjct: 1217 WSLST--CRGVLSFTDIDDNFDRATAKISHIKSRKWIKGIII---ECSSVKEKPIAIVSL 1271

Query: 742  KYSLINSAQQLPSDASH-----IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            + S  +  Q  P D        +    +V G++ +    GCFV+    + G        D
Sbjct: 1272 RNSDAHPTQSTPKDIRWKNLMDLKAGQLVRGFIRHHSLKGCFVQLSSSIIGRVMLRNLSD 1331

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--STDASFMQEHFLLEEKIA 854
            G   ++ +T+ +GQ V + ++D+  + G++ LSL++S  S   T  S +Q+   L+  + 
Sbjct: 1332 GFVQNVEETFPLGQLVTAKVIDI--QNGQVELSLRESDLSDRQTIYSVLQKGLRLQGTVK 1389

Query: 855  MLQ 857
             +Q
Sbjct: 1390 NIQ 1392



 Score = 40.4 bits (93), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 20/244 (8%)

Query: 612 FAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 664
           FAP S+L    +      SS+  +  +V CRI++  P    I +S  MKP+ +S+     
Sbjct: 379 FAPNSQLADSDISADAALSSLPSLQSIVCCRIVAFSPLDGTIIVS--MKPSILSKTIVSF 436

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
           D +  G  V   ++ V  N  +   I +   +  IP  H  D +     +K+    G + 
Sbjct: 437 DELHPGMPVQCKIESVRENGCLC--IVEDKIRAWIPQMHFGDTV--GARLKNKFVAGKKV 492

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI---IETGCFVR 780
              +L +  +S    ++ K   I++   + +       N     Y C        G  V 
Sbjct: 493 KGCVLSIFQDSHRCTITTKKKFIDNQYPVIASIQDAKSNIGSAAYCCVYQVSSSRGLQVE 552

Query: 781 FLGRLTGFAPRSKAVDGQRADL---SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           F   + GF P S     +   L   S+ Y VG++++  IL V+ E+ RI +SL +    +
Sbjct: 553 FFQGVKGFLPVSYMGLEKLPSLEWLSENYPVGKTLKVWILSVHEESHRIIVSLSRDVIMN 612

Query: 838 TDAS 841
            D+S
Sbjct: 613 DDSS 616


>gi|347970192|ref|XP_313352.5| AGAP003595-PA [Anopheles gambiae str. PEST]
 gi|333468818|gb|EAA08922.6| AGAP003595-PA [Anopheles gambiae str. PEST]
          Length = 1470

 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 165/704 (23%), Positives = 305/704 (43%), Gaps = 82/704 (11%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEF-------EAVERGLHKKNKKKKKKTERKANETV 104
           P  PRG    + +  R + H    + F       E   + L  K + +  ++E++  E  
Sbjct: 6   PALPRGPSRPVVKHNRVKKHKTPKSHFGAKTLPAEQKAQRLRPKERWQAMQSEKEMEE-- 63

Query: 105 DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA- 163
           + L   F            + +    + AGM L G V ++   +L+I LPG L G+ +  
Sbjct: 64  EQLQQCFK----------GSNLVFGKVRAGMLLLGCVKQIRATELLISLPGRLNGIVQIT 113

Query: 164 --ADALDPILDNEIEANEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             ++A    L++       +   L  ++ VG LV   VL+   D+     R+++L+L  S
Sbjct: 114 NISEAYSKRLEHMYNTRSTDCPTLGDLYTVGDLVYMKVLRKVKDR-----RQVYLTLDPS 168

Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL 279
            L+       + EG+VL A +   EDHGY +  G+ +   FLP+ +L  N   +   G  
Sbjct: 169 KLHSDFKPAQLVEGLVLAATITVKEDHGYTMDIGVHNVRAFLPQEHLNGNRDDE---GRN 225

Query: 280 LQGVVRSIDRTRK---VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           L   + S+ ++     VV  +  PD        +++ ++++ +VPG  ++  V   +E G
Sbjct: 226 LFCSIHSVTQSGSGAVVVLKAFRPDEPR---VLNVEEVAVETIVPGCQLTFTVGEPVEYG 282

Query: 337 VM-LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
           +  + F    T  V+   L  T  T+N    Y+  K + A +L+V P +  V ++L PY 
Sbjct: 283 LRGMLFEDSITAYVNRNML--TKVTSN-PEKYSMFKTLPATLLYVMPVTNEVFVSLRPY- 338

Query: 396 LHNRAPPSHVK-VGDIYDQSKVVRVDRGLGLLLD--------IPSTPVSTPAYVTISDVA 446
            +NRA       VG I ++++V   D G G+ L+        +P   +   A        
Sbjct: 339 PNNRADCGQAHMVGSIVEKARVKSTDGG-GVWLEFGNKCRALLPMGVIRKTAEAAAGGNV 397

Query: 447 EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA--FEGLVFTHSDVKPGMVVKG 504
           +E V  +   ++ G+  RV ++ F  LE  +T I+  S    E ++    DV+ G   K 
Sbjct: 398 DESV--MLSNFQVGTTHRVGVVYFDPLE--STYIVSNSPDHAETMIQDSFDVEIGKTYKC 453

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRIT 562
           +V+ + S GA+V   G V  +       ++E      K KV   +  R +  G+ +  + 
Sbjct: 454 RVLQLLSTGALVGV-GRVTGIV------KYEFFNRDSKLKVRDVVPMRAVCRGLDNDFLM 506

Query: 563 VTHKKTLVKSKLAILSSYAEATDRLITH---GWITKIEKHGCFVRFYNGVQGF--APRSE 617
            T++  L+  K  IL  +++           G +++I+K   +VRF+N + G   A  + 
Sbjct: 507 FTNQPMLLNEKAPILMHWSQLDRNRKDQKFVGAVSQIQKSYVWVRFFNNLSGRINASVTV 566

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
            G D   E + +   G +    ++     +  I+L+      + + D  V+   L    V
Sbjct: 567 AGQDEA-EVAKLRQ-GSIRLFTVLDFDEGANIIDLAL-----KQTSDQPVRTAQLARVTV 619

Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
             V  +A    V+ +   +GTIP E  ++  EH ++   +++ G
Sbjct: 620 SYV--HATGAEVLTENGEQGTIPAECFSEFGEHNSLYMRLLRGG 661


>gi|125776020|ref|XP_001359140.1| GA19088 [Drosophila pseudoobscura pseudoobscura]
 gi|54638882|gb|EAL28284.1| GA19088 [Drosophila pseudoobscura pseudoobscura]
          Length = 1433

 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 140/612 (22%), Positives = 274/612 (44%), Gaps = 64/612 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG           IHAE  +    +  G  +K  KK ++++ K +  + +L   + D
Sbjct: 8   FPRGGI----------IHAEAKSANSNIIFGATQKKAKKGQQSKAK-DSFLKELTEEYND 56

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPI 170
            +       A  + L  +   M + GVV E +   L I +PG +     +   ++A   +
Sbjct: 57  QLESA---SAETLRLDTLQEDMLVMGVVKESSAISLQIAIPGRMTARTQVGEISEAYTRV 113

Query: 171 LDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
             + +  E ++ + L  +F VG +V    ++   DK    +  + LSL+ + +++ L  +
Sbjct: 114 AQSAMAGETSDYHDLTELFPVGTIVYGKAIK--TDKPGSNRTSVLLSLKPADVHERLHHK 171

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 288
            +++G V +  +    +HGY++  G+   T F+      E +   +  G L      +  
Sbjct: 172 NIKKGFVFSGAISEALEHGYVIETGIQGLTAFVA----CEAAEQTLHVGQL------AFL 221

Query: 289 RTRKVVYLSSDPDTVSKCVTKDLKGI------SIDLLVPGMMVSTRVQSILENGVMLSFL 342
           + ++V + +S        V +D   I      ++D ++PG +V  +V  +L++G+  S +
Sbjct: 222 KVKQVKHDASTSSCTCVHVQQDALKIKSQNESNLDYILPGSIVRFKVSKLLKDGLKGSIM 281

Query: 343 T-YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP 401
              FT  V+  HL N   T     DY  +++ +AR+L+V P ++ V LTLN   +  RA 
Sbjct: 282 NESFTAYVNEHHLANALETP---EDYELNEEYHARVLYVMPLTKLVYLTLN-LDIKQRAE 337

Query: 402 PSH------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE- 454
                    +K G I +++KV+R+  G G++L +     +  +Y +I    +    K E 
Sbjct: 338 DVEEQEEEPLKPGSIVEKAKVLRLGSG-GVVLLLNKKLKAILSYGSIKANFKGNYDKDEV 396

Query: 455 -KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             KY   +  +VR+LG+  +E L       +     +++  D+ PG +V  K+I  D   
Sbjct: 397 LSKYGRKTKHKVRVLGYDMIESLYYCSDDPNLVNEKLYSLEDLNPGDIVTAKMIKKDE-- 454

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVK 571
              +  G    +  L  + +   +    +++ G  +  RVL +   R T  ++++   ++
Sbjct: 455 ---KINGWTVKIGRLNGIIDQLYLANNLRYEAGQRVRCRVLDISLDRKTCYLSNRSEYLR 511

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-Y 630
               +L+S + A +  +  G + + E     V+F +G++G   R  L      E SS+ +
Sbjct: 512 KDAKLLTSLSAAHEGGVYLGTVVRCEPGYILVKFGDGIKGVLHRQNLS-----EKSSLSF 566

Query: 631 HVGQVVKCRIMS 642
             GQ    RI+S
Sbjct: 567 FEGQTTTFRILS 578


>gi|195504842|ref|XP_002099252.1| GE10809 [Drosophila yakuba]
 gi|194185353|gb|EDW98964.1| GE10809 [Drosophila yakuba]
          Length = 1478

 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 146/623 (23%), Positives = 270/623 (43%), Gaps = 54/623 (8%)

Query: 116 SGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPIL 171
           +G+L  + A  + +  +   M + GVV E     L I LPG +      AD   A   + 
Sbjct: 55  NGQLEAFSAETLNMDTLQEDMLVMGVVKETTATALQISLPGRMFARTLVADISEAYTRVA 114

Query: 172 DNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 229
              +  + +E + L  +F  G++V    ++ +  K   G+  + LSL+ + ++  L  ++
Sbjct: 115 KAAMGGDTSEYHDLSELFQAGRIVYGKAIKTE--KLGTGRISLLLSLKPADVHGNLHHKS 172

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 289
           +++G + +  V  I++HGY++  G+     F+P     E     +  G L    V+S+  
Sbjct: 173 IKKGFIFSGAVAEIQEHGYVIESGVQGLQAFVP----CEEPAQKLHVGQLAFLKVKSVHH 228

Query: 290 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGT 348
                  S       +   K     ++D ++PG +V  +V   L++G+  S +   F+  
Sbjct: 229 DTHQSTCSCVQVEQDQLRIKSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAY 288

Query: 349 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH---- 404
           ++  HL N   T    + Y  ++  NAR+L+V P ++ V LTLN  +    A        
Sbjct: 289 INEHHLTNALDTL---DAYELNEDYNARVLYVMPLTKLVYLTLNLDIKSGVAAEKDQDEE 345

Query: 405 ------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KK 456
                 +KVG + +++KV+R+  G G++L +        +Y +I    +    K E   K
Sbjct: 346 EQEEEPLKVGSVVEKAKVLRLGSG-GVVLLLNKKLKGIISYGSIRANFKGNYDKDEVLSK 404

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGA 514
           Y   +  +VRILG+  +E L       +     ++   D+  G +V            G 
Sbjct: 405 YGRKTKHKVRILGYDIIESLYYCSDDPNVVSEKLYCLEDINAGDLVTAKIFKKDDKIKGW 464

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 572
            V+  G V  +     + +F +  P  ++ VG  L  RVL V ++R    V+++   +  
Sbjct: 465 SVRI-GKVNGI-----LEQFYLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRSEYLGK 517

Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
            + +L+ YA A    +  G + + E +   V+F NG++G   R  L      E +S +  
Sbjct: 518 GIKLLTDYASAHVGNVYVGTVVRCEDNYVLVKFGNGIKGVLHRQNLK-----ENNSFFE- 571

Query: 633 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIA 691
           GQ  K RI++      +I L+      ++ E   V++ + +   ++V +T  A       
Sbjct: 572 GQTTKFRILTR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEVKITYAADDDEEDE 629

Query: 692 KGYSK-----GTIPTEHLADHLE 709
            G  K     G IP   L+DHLE
Sbjct: 630 DGNPKLEEFMGLIPLRLLSDHLE 652


>gi|302796338|ref|XP_002979931.1| hypothetical protein SELMODRAFT_419585 [Selaginella moellendorffii]
 gi|300152158|gb|EFJ18801.1| hypothetical protein SELMODRAFT_419585 [Selaginella moellendorffii]
          Length = 309

 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 80/113 (70%), Gaps = 5/113 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G+VKNVT KGCF++LS  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 160  VHGFVKNVTEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 219

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++V
Sbjct: 220  HIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLPESHVV 267



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 46/191 (24%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     ++
Sbjct: 46   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCYI 105

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             S+N E+K + L L P       KT D      + F  + D++G RI+++ +GVGG  VQ
Sbjct: 106  RSVNHERKQVDLSLHP-------KTSD------EQF-KKNDLLGRRITRVFAGVGGHTVQ 151

Query: 1281 ------------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQ------ 1310
                                    + P L  R+    L N  V +P   +  G+      
Sbjct: 152  GRWESLGKVHGFVKNVTEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRI 211

Query: 1311 --FDPLSGYDE 1319
               +PLSG+ E
Sbjct: 212  LSIEPLSGHIE 222


>gi|380494873|emb|CCF32825.1| rRNA biogenesis protein RRP5, partial [Colletotrichum higginsianum]
          Length = 565

 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 218/494 (44%), Gaps = 46/494 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKN--KKKKKKTERKANETVDD 106
           D+ P+FPRGGG  LT  E+ +I  E  A+    E  L   N   K KK+  RKA +T D 
Sbjct: 58  DEEPLFPRGGGSILTPLEQKQITMEAKADAAKEEAELFDPNVKSKAKKEKRRKAKDTKDV 117

Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
             +   D +          +  K +  G  + G +  ++   L I LP  L G   +A  
Sbjct: 118 KPARDEDAVK------IEGLNFKRLVKGSLVLGQITHIDTVQLTIALPNNLTGHVSIASI 171

Query: 164 ADALDPILDNEIEANEDNL------------LPTIFHVGQLVSCIVLQLDDDKKE-IGKR 210
           +D  +  L+ ++ A ++              L ++F +GQ V   VL   D+      KR
Sbjct: 172 SDTTNSKLEKDLNAADEESDDDEEEDDEGIDLKSMFKIGQYVRTHVLSTADESGPGKAKR 231

Query: 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAEN 269
           +I LSLR +    G++ + V     L A + S++DHGY +  G+     GFLP+  +  +
Sbjct: 232 RIELSLRPAEANAGITGDDVVAHTTLMASIASVQDHGYEMDLGIEGDLKGFLPKKEVGPD 291

Query: 270 -SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
                ++PG +   VV+S+  T  VV LS+DP  +           +I+  +PG +    
Sbjct: 292 MDEASLRPGAVCLCVVKSV--TGIVVQLSTDPLKLGNTSLVASTAPTINSFLPGSLADVL 349

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--A 386
           +  +   G+    L +   T D+ H        + +  Y    +V ARI+   P +R   
Sbjct: 350 LTEVTSRGIQGKLLGHLPVTADLIHSGVGPDNVDLEAKYTVGTRVKARIICNFPAAREPK 409

Query: 387 VGLTLNPYLL-----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
           +G++L P+++             +AP   + +    ++  V +V+  +GL +D     ++
Sbjct: 410 LGISLLPHIVGLQPKSSGKGSRAKAPLDILPIASFVEKCTVRKVEPEIGLYVDTGVPGIA 469

Query: 436 TPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
              +V IS V + +V  L +    +K GS  R R++G+  L+G+     + +  +     
Sbjct: 470 --GFVHISRVKDGKVDALYETSGPHKVGSTHRGRVVGYSSLDGMFLLSFEQNILDQPFIR 527

Query: 493 HSDVKPGMVVKGKV 506
             DV  G VV GK+
Sbjct: 528 LEDVPVGEVVSGKI 541


>gi|302811444|ref|XP_002987411.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
 gi|300144817|gb|EFJ11498.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
          Length = 378

 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 143/324 (44%), Gaps = 83/324 (25%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V+I Q V  YV +V + WA L +S HLK  LFILD++  PSEL+ F+ RF +G     H+
Sbjct: 46   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDNPSELERFKERFKVGDPFQCHI 105

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             S+N E+K + L L P       KT D      + F  +GD++G RI+++ +GVGG  VQ
Sbjct: 106  RSVNHERKQVDLSLHP-------KTRD------EQF-KKGDLLGRRITRVFAGVGGHTVQ 151

Query: 1281 ------------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
                                    + P L  R+    L N  V +P        F P   
Sbjct: 152  GRWESLGKVHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSFVQNPAE-----MFPP--- 203

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               G+ +  ++L I      + H+E+SL       ++T S D S             +  
Sbjct: 204  ---GKVISGRILSIEPL---SGHIEMSL-------TATTSQDSS-----------GWKKF 239

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL----------SNLSDGYVESPEKEFPIG 1426
                IV G + N+ + G FI L    ++ V L          S +S  +++     + +G
Sbjct: 240  GAGEIVSGRIHNIEAFGIFISLP---ESHVFLVCAPGCLCHVSEVSYNFIQDLSTLYKVG 296

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L V+  +KRV + +K S
Sbjct: 297  QWVQVKILKVDAETKRVSLGMKAS 320



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 79/112 (70%), Gaps = 5/112 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G+VKNVT KGCF++LS  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 160  VHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 219

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++
Sbjct: 220  HIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLPESHV 266



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 28/268 (10%)

Query: 225 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGID-----VKPGL 278
           ++ ETV     +  YV+ ++D+   L    P   G L   + ++N S ++      K G 
Sbjct: 41  ITFETVTIEQSVIRYVQEVKDNWAWLVLS-PHLKGCLFILDTSDNPSELERFKERFKVGD 99

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLL---VPGMMVSTR------ 328
             Q  +RS++  RK V LS  P T  +   K DL G  I  +   V G  V  R      
Sbjct: 100 PFQCHIRSVNHERKQVDLSLHPKTRDEQFKKGDLLGRRITRVFAGVGGHTVQGRWESLGK 159

Query: 329 ----VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
               V+++ E G  +         + + +L N+F   N    +   K ++ RIL ++P S
Sbjct: 160 VHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSF-VQNPAEMFPPGKVISGRILSIEPLS 218

Query: 385 RAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP---VSTPAYVT 441
             + ++L      + +       G+I   S  +      G+ + +P +    V  P  + 
Sbjct: 219 GHIEMSLTATTSQDSSGWKKFGAGEIV--SGRIHNIEAFGIFISLPESHVFLVCAPGCLC 276

Query: 442 -ISDVAEEEVRKLEKKYKEGSCVRVRIL 468
            +S+V+   ++ L   YK G  V+V+IL
Sbjct: 277 HVSEVSYNFIQDLSTLYKVGQWVQVKIL 304


>gi|195573449|ref|XP_002104706.1| GD18300 [Drosophila simulans]
 gi|194200633|gb|EDX14209.1| GD18300 [Drosophila simulans]
          Length = 1128

 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 159/679 (23%), Positives = 287/679 (42%), Gaps = 70/679 (10%)

Query: 116 SGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE 174
           +G+L  + A  + +  +   M + GVV E+    L  CL       AR   A+       
Sbjct: 55  NGQLEAFSAETLNMDTLQEDMLVMGVVKELTATALHYCL-------ARPDAAMSG----- 102

Query: 175 IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGM 234
            + +E + L  +F VG++V    ++ +  K + G+  + LSL+ + ++  L  +++++G 
Sbjct: 103 -DTSEYHDLTELFQVGRIVYGKAIKTE--KLDTGRVSLLLSLKPADVHGSLHHKSIKKGF 159

Query: 235 VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKV 293
           + +  V    +HGY++  G+     F+P    A+   +     L ++ V     + T   
Sbjct: 160 IFSGAVAEALEHGYVIESGVQGLQAFVPCEKPAQKLHVGQLAFLKVKTVHHDTHQSTCTC 219

Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIF 352
           V +  D     +   K     ++D ++PG +V  +V   L++G+  S +   F+  V+  
Sbjct: 220 VQVEQD-----QLRIKSQNETNLDYILPGSIVRFKVAKHLKDGLKGSIMNESFSAYVNEH 274

Query: 353 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-------- 404
           HL N   T    + Y  ++  NAR+L+V P ++ V LTLN  +    A            
Sbjct: 275 HLANALDTL---DAYELNEDYNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDDDEEEQEV 331

Query: 405 --VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEG 460
             ++VG + +++KV+R+  G G++L +        +Y +I    +    K E   KY   
Sbjct: 332 EPIQVGSVVEKAKVLRLGSG-GVVLLLNKKLKGIISYGSIRGNFKGNYDKDEVLSKYGRK 390

Query: 461 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGAIVQF 518
           +  +VRILG+  +E L       +     +F   D+  G +V            G  V+ 
Sbjct: 391 TKHKVRILGYDVIESLYYCSDDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKGWSVRI 450

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAI 576
            G V  +     + +F +  P  ++ VG  L  RVL V ++R    V+++   +   + I
Sbjct: 451 -GKVNGI-----LEQFYLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLGKGMKI 503

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
           L+ YA A    +  G + + E     V+F NG++G   R  L      E SS +  GQ  
Sbjct: 504 LTDYASAHVGNVYMGTVVRCEDTYVLVKFGNGIKGVLHRQNLK-----ENSSFFE-GQTT 557

Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYS 695
           K RI++      +I L+      ++ E   V++ + +   ++V +T  A        G  
Sbjct: 558 KFRILTR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEVKITFAAEDDEEDEDGNP 615

Query: 696 K-----GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ 750
           K     G IP   L+DHLE       V   G   D   ++ N  S  L    Y     + 
Sbjct: 616 KLEEFVGLIPLRLLSDHLELLHAQMRVHPAGSYTDAACIMQNIFS--LRDVPY----FSG 669

Query: 751 QLPSDASHIHPNSVVHGYV 769
           QL  D   +    ++  YV
Sbjct: 670 QLTKDWQSVQVGDIIRSYV 688


>gi|302824310|ref|XP_002993799.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
 gi|300138362|gb|EFJ05133.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
          Length = 429

 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 149/308 (48%), Gaps = 65/308 (21%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+
Sbjct: 93   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHI 152

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             S+N E+K + L L P     SDK              +GD++G RI+++ +GVGG  VQ
Sbjct: 153  RSVNHERKQVDLSLHP---KTSDKQ-----------FKKGDLLGRRITRVFAGVGGHTVQ 198

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL--------EISR 1332
                 +G+VH   +KN+         ++G F  L+   E + ++ K L        +I +
Sbjct: 199  SRWESFGKVHGF-VKNV--------TEKGCFVVLAPSLEAR-IQLKNLSNSFVQNPDIGK 248

Query: 1333 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1392
             + G  H+E+SL       ++T S D S             +      IV G + N+ + 
Sbjct: 249  PLSG--HIEMSL-------AATTSQDSSG-----------WKKFGAGEIVSGRIHNIEAF 288

Query: 1393 GCFIMLSRKLDAKVLL----------SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
            G FI L+   ++ V L          + +S  +++     + +G+ V  ++L V+  +KR
Sbjct: 289  GIFISLA---ESDVFLVCAPGCLCHVAEVSYDFIQDLSTLYKVGQWVQVKILKVDGETKR 345

Query: 1443 VEVTLKTS 1450
            + + +K S
Sbjct: 346  ISLGMKAS 353



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 19/112 (16%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P+    IGK          PLS 
Sbjct: 207  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPD----IGK----------PLSG 252

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++
Sbjct: 253  HIEMSLAATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDV 299


>gi|302823614|ref|XP_002993458.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
 gi|300138732|gb|EFJ05489.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
          Length = 743

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 93/150 (62%), Gaps = 12/150 (8%)

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
            L+S+L+      +     D+  PG+    +E       + G+VKNVT KGCF++L+  L+
Sbjct: 468  LKSALNQFIYRGTVRKVLDLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLE 520

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
            A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS  +E++L  + S+ +S       
Sbjct: 521  ARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIEMSLAATTSQDSS-----GW 575

Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
                 G+IV G+I  +E++G+FI++  +N+
Sbjct: 576  KKFGAGEIVSGRIHNIEAFGIFISLAESNV 605


>gi|170062256|ref|XP_001866588.1| programmed cell death protein 11 [Culex quinquefasciatus]
 gi|167880230|gb|EDS43613.1| programmed cell death protein 11 [Culex quinquefasciatus]
          Length = 1481

 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 167/696 (23%), Positives = 286/696 (41%), Gaps = 68/696 (9%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           P FPRG      +  +       + ++ A  +   K+ K ++++ ++   E ++      
Sbjct: 6   PSFPRGRKTESAEDGKPRKKFRRNTDYGASTKNEEKQQKPRQRERQQARLEQIEMEREEL 65

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
              +       A  +  K    GM + G V +V + +L++ LPG L G   +   + A  
Sbjct: 66  VQTVK------AAPLQFKTAQEGMLVLGCVYKVQKLELLVSLPGRLFGRVPVTAISGAYG 119

Query: 169 PILDNEIEANEDNL---LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
             L + +E  E      L  ++ VG+LV   +   D ++      +  LSL    L+  L
Sbjct: 120 KRLQSVVEGGEGGCCPGLEELYSVGELVYVKIKGKDQER-----WRFELSLDPKELHSEL 174

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP----RNNLAENSG---IDVKPGL 278
           + + + EG+V++A V+  EDHGY ++ G+ +   FLP    RNN  E  G     V+   
Sbjct: 175 NHKHLVEGLVISATVEEEEDHGYQMNVGIRNVRAFLPTKNVRNNRMEVGGNVHCTVEKVT 234

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
           L  G       T  V+  +  P  + K    D+   +ID L+PG +V+  V+SIL NG+ 
Sbjct: 235 LANG-------TATVILKAFKPKELRKL---DVAAANIDSLMPGSVVTFTVESILPNGLQ 284

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWK-NDYNQHKKVNARILFVDPTSRAVGLTL-----N 392
               T F  TV  F  +N       K   +   K+V ARIL+V P ++ V LTL     N
Sbjct: 285 ---GTLFDDTVPAFVNENMLEKPLSKVASFELFKQVPARILYVMPMTKHVFLTLAIGDSN 341

Query: 393 PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS-TPAYVTISDV-AEEEV 450
            Y + +  P     VG +   +KV+      G+   +     +  P YV  S   A  + 
Sbjct: 342 RYSVADPLP-----VGTVLKDAKVMHKCSTGGVWFQLGKKHKALLPRYVLKSRYNANYDE 396

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV- 509
           + +  KY+ GS   VR++ +   +         +      F+  D++ G V + +V  + 
Sbjct: 397 QIVMAKYQIGSLHTVRVIRYEAFDRTLIITDDDATIGSRFFSLDDLRVGDVYECRVTRIL 456

Query: 510 -DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV---KSKRITVTH 565
            D  G  V   GG      + H   F      K++     +  R++G+   K + +   H
Sbjct: 457 DDKRGLAVTLAGGRVKGIVMSHNYRF-----TKQYAPKQSIKMRLIGIDEDKQQALFTNH 511

Query: 566 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625
            + L KS   IL   A   D+      I++ EK    V F N +     +    +    E
Sbjct: 512 PEYLRKSAKLILDRAAIKPDQKCLGTVISETEKF-FIVAFCNKITAILFKFCRSVTQDSE 570

Query: 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 685
                  G V    +        +I L   + P     D+   LG + +  +  +    V
Sbjct: 571 RIDRLKPGSVELFTVHEVTEDGAKITL---ILPFATGGDN---LGHVSTATITGIFATGV 624

Query: 686 VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
            VY++ K    GT+P E L+D  EH  +++S ++ G
Sbjct: 625 DVYLV-KENETGTVPPEALSDFPEHNALVQSTLREG 659


>gi|157127501|ref|XP_001655011.1| programmed cell death protein 11 (pre-rrna processing protein rrp5)
           [Aedes aegypti]
 gi|108872936|gb|EAT37161.1| AAEL010827-PA [Aedes aegypti]
          Length = 1542

 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 158/701 (22%), Positives = 288/701 (41%), Gaps = 56/701 (7%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGL-----HKKNKKKKKKTERKANETVDD 106
           P FPRG      + E D+ H       ++VE G       K +K + K+ ++   E ++ 
Sbjct: 6   PSFPRG-----RKVETDDDHKPRKKLKKSVEYGASTAKDEKAHKHRPKERQQALLEQMEQ 60

Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG------L 160
                   +S      A  +  +    GM L G V ++ + D+ + LPG L G      +
Sbjct: 61  DKEELEQSVS------AAPLQFRTAQEGMLLMGCVYKITKMDIKVSLPGRLYGTVPIMAI 114

Query: 161 ARAAD-ALDPILDNEIEANEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 217
           + A +  L  ++   +   E+    L  ++H G LV   +     +K   G     L+L 
Sbjct: 115 SEAYNNRLHSLVQKSLGGPEEQCPGLEELYHEGDLVYVKIKSKHSEKNHFG-----LTLD 169

Query: 218 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 277
              L+  L+ + + EG+VL+A V+  EDHGY ++ G+ +   FLP +N+  N  I  +  
Sbjct: 170 PQDLHSELTCKHLVEGLVLSATVEEEEDHGYQMNVGIRNVRAFLPTHNVRNNKMIVGRNL 229

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
                 V   + +  VV  +  P    K    ++   ++D LVPG +V+  V+S+L+NG+
Sbjct: 230 FCSVEKVTHGNGSATVVLRAFKPTEPRKL---EVAQPNVDSLVPGSVVTFTVESVLQNGL 286

Query: 338 MLSFLTYFTGTVDIFHLQNTF--PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
             S    F  TV  F  +N    P ++ K  Y   K++ AR+L+V P ++ V +TL  + 
Sbjct: 287 QGSL---FDDTVPAFVNENMLEKPLSSLKQ-YELFKEIPARVLYVMPLTKHVFVTLAHFD 342

Query: 396 LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS-TPAYVTISDVAEE-EVRKL 453
            +  +    V  G I   +K++      G+   I     +  P Y+  S   +  + + +
Sbjct: 343 GNRASVADPVTPGKIIQDAKIIHKSLN-GVWFQIGKKHKALLPKYILKSKYNQNYDEQIV 401

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             KY+ GS   VR++ F   +            E   FT +D+K G +   ++  V    
Sbjct: 402 MAKYQVGSVHTVRVMRFEAFDRTIIVTDDEEKIETKYFTLNDLKVGDIYNCRITKV---- 457

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK 571
            + +  G + +L  L  +      +P K +        R++G+   R     T+    +K
Sbjct: 458 -LDKKRGFLVSLDNLKGIVTAYNFEPSKTYAANQMAKLRLIGIDEDRKMAQFTNHPEYLK 516

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
               +L+S  +        G +   ++    V F N +     +    +       S   
Sbjct: 517 KSAKLLTSREDVKQGQRFLGTVISEQEKFFIVAFCNKITAICFKFCRAVTQDQNRISRLK 576

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            G V +  +        R  +   +     SE+    LG +VSG +  +      +Y++ 
Sbjct: 577 PGVVDRFTVNEVSEDGSRFTVVIPLDAE--SEN----LGHIVSGTITGIYATGADIYLV- 629

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN 732
           K  + GT+P E  +D   H  +  SV+K G +   + V +N
Sbjct: 630 KENATGTVPPELFSDFPPHNALYASVLKEGEQLRVVNVKEN 670


>gi|195151847|ref|XP_002016850.1| GL21990 [Drosophila persimilis]
 gi|194111907|gb|EDW33950.1| GL21990 [Drosophila persimilis]
          Length = 1433

 Score =  100 bits (248), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 206/936 (22%), Positives = 395/936 (42%), Gaps = 99/936 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG           IHAE  +    +  G  +K  KK ++++ K +  + +L   + D
Sbjct: 8   FPRGGI----------IHAEAKSANSNIIFGATQKKAKKGQQSKAK-DSFLKELTEEYND 56

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPI 170
            +       A  + L  +   M + GVV E +   L I +PG +     +   ++A   +
Sbjct: 57  QLESA---SAETLRLDTLQEDMLVMGVVKESSAISLQIAIPGRMTARTQVGEISEAYTRV 113

Query: 171 LDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
             + +  E ++ + L  +F VG +V    ++ D  K    +  + LSL+ + +++ L  +
Sbjct: 114 AQSAMAGETSDYHDLTELFPVGTIVYGKAIKTD--KPGSNRTSVLLSLKPADVHERLHHK 171

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 288
            +++G V +  +    +HGY++  G+   T F+      E +   +  G L      +  
Sbjct: 172 NIKKGFVFSGAISEALEHGYVIETGIQGLTAFVA----CEAAEQTLHVGQL------AFL 221

Query: 289 RTRKVVYLSSDPDTVSKCVTKDLKGI------SIDLLVPGMMVSTRVQSILENGVMLSFL 342
           + ++V + +S        V +D   I      ++D ++PG +V  +V   L++G+  S +
Sbjct: 222 KVKQVKHDASTSSCTCVHVQQDALKIKSQNESNLDYILPGSIVRFKVSKHLKDGLKGSIM 281

Query: 343 T-YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP 401
              FT  V+  H+ N   T     DY  +++ + R+L+V P ++ V LTLN  +      
Sbjct: 282 NESFTAYVNEHHMANALETP---EDYELNEEYHTRVLYVMPLTKLVYLTLNLDIKQTAED 338

Query: 402 -----PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE-- 454
                   +K G I +++KV+R+  G G++L +     +  +Y +I    +    K E  
Sbjct: 339 VEDQVEEPLKPGSIVEKAKVLRLGSG-GVVLLLNKKLKAILSYGSIKANFKGNYDKDEVL 397

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
            KY   +  +VR+LG+  +E L       +     +++  D+ PG +V  K+I  D    
Sbjct: 398 SKYGRKTKHKVRVLGYDMIESLYYCSDDPNLVNEKLYSLEDLNPGDIVTAKMIKKDE--- 454

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVKS 572
             +  G    +  L  + +   +    +++ G  +  RVL +   R T  ++++   ++ 
Sbjct: 455 --KINGWTVKIGRLNGIIDQLYLANNLRYEAGQRVRCRVLDISLDRKTCYLSNRSEYLRK 512

Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-YH 631
              +L+S + A +  +  G + + E     V+F +G++G   R  L      E SS+ + 
Sbjct: 513 DAKLLTSLSAAHEGGVYLGTVVRCEPGYILVKFGDGIKGVLHRQNLS-----EKSSLSFF 567

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-GSLVSGV-VDVVTPNAVVVYV 689
            GQ    RI+S      +I L+      ++ E   V++  +L +G+ + +  P       
Sbjct: 568 EGQTTTFRILSR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEMKITYPADEDEDA 625

Query: 690 IAKGYSK-------GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742
                 +       G IP+  L+DH+E     K +   G   +   +  N  S  L    
Sbjct: 626 DQDDEQEPKIEEFLGLIPSSLLSDHVELIAAQKRIHPVGSHTEAACIGQNIFS--LRDVP 683

Query: 743 YSLINSAQQLPSDASHIHPNSVVHGYVCN-----IIETGCFVRFLGRLTGFAPRSKAVDG 797
           Y     + QL +D   +    +V  YV N     +++    +R   ++     +   ++ 
Sbjct: 684 Y----FSGQLTTDWKTVQVGDIVRAYVKNVSTDQVVDLMVAIRDYNKVVKVHVKMLRLNA 739

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD----ASFMQEHFLLEEKI 853
            RA L       Q +   +L  + ET  +T+S K +   S D    A  ++ +F  +E +
Sbjct: 740 VRA-LPVDLTPDQLLYVKVLSKSVETKTLTVSAKLTDVWSGDLGETAKLVESYF--DELM 796

Query: 854 AMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    K   + + K+  G  I  + +G    SND+   V   E S     +    LA A
Sbjct: 797 QIRSVLKEKSAPIAKFDLGKTISVIFKGIDPVSNDWLYTV---EGSPKVKALLVSSLAPA 853

Query: 913 ----TVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
               T + GS   A IL +  AE L+ +S K V I+
Sbjct: 854 GSAVTPQVGSKQPAVILWIDYAEDLLLVSTKKVDIE 889


>gi|302776688|ref|XP_002971494.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
 gi|300160626|gb|EFJ27243.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
          Length = 606

 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 86/132 (65%), Gaps = 12/132 (9%)

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
            D+  PG+    +E       + G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P +
Sbjct: 201  DLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE 253

Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1481
             FP GK+++GR+LS++PLS  +E++L  + S+ +S            G+IV G+I  +E+
Sbjct: 254  MFPPGKVISGRILSIKPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEA 308

Query: 1482 YGLFITIENTNL 1493
            +G+FI++  +++
Sbjct: 309  FGIFISLAESDV 320



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 155/363 (42%), Gaps = 66/363 (18%)

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
            +LS++PS L  ++    ++  E  V+I Q V  YV +V + WA L +S HLK  LFILD+
Sbjct: 75   DLSLRPSELAGNDAACSVITFE-TVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDT 133

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            + +PSEL+ F+ RF +G     H+      +           D +      +S +    F
Sbjct: 134  SDDPSELERFKERFKVGDPFQCHIRKRGPVRPTDYTSFCWCWDILCKADGKVSENQ---F 190

Query: 1257 IHEGDIVG---------GRISKILSGV------GGLVVQIGPHLYGRVHFTELKNICVSD 1301
            I+ G +           G++   LSG        G  V + P L  R+    L N  V +
Sbjct: 191  IYRGTVRKVLDLKRPGRGKMGLELSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQN 250

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
            P        F P      G+ +  ++L I + + G  H+E+SL       ++T S D S 
Sbjct: 251  PAE-----MFPP------GKVISGRILSI-KPLSG--HIEMSL-------TATTSQDSS- 288

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL----------SNL 1411
                        +      IV G + N+ + G FI L+   ++ V L          S +
Sbjct: 289  ----------GWKKFGAGEIVSGRIHNIEAFGIFISLA---ESDVFLVCAPGCLCHVSEV 335

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN--LSNLHVG 1469
            S  +++     + +G+ V  ++L V+  +KR+ + +K S      + E  N   SN +V 
Sbjct: 336  SYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKASYLTEPMEEEAINEEPSNTNVP 395

Query: 1470 DIV 1472
             IV
Sbjct: 396  TIV 398


>gi|302824300|ref|XP_002993794.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
 gi|300138357|gb|EFJ05128.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
          Length = 433

 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 77/110 (70%), Gaps = 5/110 (4%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK++ GR+LS+EPLS  +
Sbjct: 218  GFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVILGRILSIEPLSGHI 277

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++
Sbjct: 278  EMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDV 322



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 149/350 (42%), Gaps = 84/350 (24%)

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
            +LS++PS L  ++    ++  E  V+I Q V  YV +V + WA L +S HLK  LFILD+
Sbjct: 75   DLSLRPSELAGNDAACSVITFE-TVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDT 133

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG---------------- 1240
            + +PSEL+ F+ RF +G     H+ S+N E+K + L L+   DG                
Sbjct: 134  SDDPSELERFKERFKVGDPFQCHIRSVNHERKQVDLSLQKQADGSHEFLLVLADILCKAD 193

Query: 1241 --ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
              +S+   D   D+  +   EG    G +  +     G  V + P L  R+    L N  
Sbjct: 194  GKVSENFNDTWIDDPASLFTEGQF--GFVKNVTE--KGCFVVLAPSLEARIQLKNLSNSF 249

Query: 1299 VSDPLSGYDEGQ--------FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1350
            V +P   +  G+         +PLSG                      H+E+SL      
Sbjct: 250  VQNPAEMFPPGKVILGRILSIEPLSG----------------------HIEMSL------ 281

Query: 1351 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL-- 1408
             ++T S D S             +      IV G + N+ + G FI L+   ++ V L  
Sbjct: 282  -TATTSQDSSG-----------WKKFGAGEIVSGRIHNIEAFGIFISLA---ESDVFLVC 326

Query: 1409 --------SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
                    S +S  +++     + +G+ V  ++L V+  +KR+ + +K S
Sbjct: 327  APGCLCHVSGVSYDFIQDLSTLYKVGQCVQVKILKVDAETKRISLGMKAS 376



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 851
           DLS  Y VGQ V+  IL V++ET RI+L +K S  +  D   M+E  + EE
Sbjct: 344 DLSTLYKVGQCVQVKILKVDAETKRISLGMKASYLTPEDIELMEEEAINEE 394


>gi|312374936|gb|EFR22395.1| hypothetical protein AND_15302 [Anopheles darlingi]
          Length = 1641

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 140/621 (22%), Positives = 257/621 (41%), Gaps = 52/621 (8%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN- 181
           A+ +    +  GM + G V    +  + + LPG + G      A+       ++A  D  
Sbjct: 74  ASNLGFVTLQTGMLVLGCVQRTFKTHMEVTLPGRITGTV-PVPAISEAYTKRLQAMIDRQ 132

Query: 182 -----LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
                 L  ++ V +LV   V++     K+   R++ LSL    L+   +   +  G+VL
Sbjct: 133 SFDCPTLDDLYKVNELVYVKVME-----KQTSPRQLTLSLNPHDLHSSFTANQLVPGLVL 187

Query: 237 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
           +A +   EDHGY +  G+ +   FLP+ NL +NS    + G  L   +  + R    V +
Sbjct: 188 SATLSIEEDHGYTMDVGIRNVRAFLPKENLCKNS---TEIGRNLFCSIEKVTRQGTTVTI 244

Query: 297 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
                   +    ++   +++ +VPG +V   V S++++G+     T F  TV  F  + 
Sbjct: 245 ILKAFRPKESRLLNVSMTNLETIVPGCVVPFTVGSVVKHGLR---GTLFDDTVAAFVNET 301

Query: 357 TFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS-HVKVGDIYDQS 414
                N K + Y   ++++A +L+V P ++ V ++L  Y   NRA  S     G+  + +
Sbjct: 302 MLTQPNSKPESYTMFQQLDATVLYVMPVTKHVFVSLAKY-PGNRAENSVAYAAGETIENA 360

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA---EEEVRKLEKKYKEGSCVRVRILGFR 471
            VV V      L          P  V +  +    EE V  +  KY  GS   +RIL + 
Sbjct: 361 HVVTVTSAGAWLQFAKEYRALLPKSVIMKRIKGNYEESV--VMSKYHVGSVHTLRILRY- 417

Query: 472 HLEGLATGILKASAFEGLV--FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             + L    +     +  V   T  D++ G + + +V  +   G      G V+      
Sbjct: 418 --DPLNRTFIVCDTLDNAVDELTLQDIQIGEIYQMRVKKLLDAGGFFVEQGAVRGSVSRE 475

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA--EATDRL 587
                + VK G + +V A ++F      +  +  T+   L+K  + ILSS    E  + +
Sbjct: 476 WFDRTQHVKEGARVQVRA-MMFE---PSTPFVQFTNLPDLLKKGIRILSSREQLENANSI 531

Query: 588 IT-------HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
           +T       HG + +  +    ++F N ++G   +    ++          VG VV+  +
Sbjct: 532 LTAPEAKQFHGLVVQETRDYFMIKFANDIKGLLMKHLRDMEQDTAKMHTLRVGSVVQVTV 591

Query: 641 MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                A++++ LS  +  T         + +L    V  V P  V + V+ +  SKGTIP
Sbjct: 592 HQYNFATQKLLLSLPLHSTDT-------VSTLTEATVIAVLPTGVEI-VLKEDRSKGTIP 643

Query: 701 TEHLADHLEHATVMKSVIKPG 721
            ++ +D   H  +    +K G
Sbjct: 644 LQYFSDFAAHNPLYVGQLKEG 664


>gi|206896344|ref|YP_002247530.1| 30S ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
 gi|206738961|gb|ACI18039.1| ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
          Length = 559

 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 235/567 (41%), Gaps = 71/567 (12%)

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG---SCVRVRILGFRHLEGLATGI 480
           GL LDI S      A++ + +   E    L ++ +EG   + V V +      +G  +  
Sbjct: 34  GLWLDIAS---KYDAFLPLDECTSE----LARQVQEGNVPTSVEVVVTRTNDDKGYISVS 86

Query: 481 LKASAFEGLVFTHSDV----KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
            K +A+  L     DV    K G   K K +  D  G  V    G+    P   + E   
Sbjct: 87  QKRAAYRKL---WKDVEEWEKSGESRKVKAVGADDKGVFVDLGAGILGYVPASQL-EIRF 142

Query: 537 VKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS-KLAILSSYAEATDRLITHGWI 593
           V+  KK+ VG  L  ++L V  KR  I +T ++ L +  K     ++    D  I  G +
Sbjct: 143 VRDTKKY-VGRSLRVKILRVNRKRNQIILTQRQVLEEEQKERAEKAWLRLKDSDIVRGHV 201

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           ++I   G FV   +G++GF P+ EL   P    + ++  G VV+ +++S     + + LS
Sbjct: 202 SRITDEGIFVDLGDGIEGFVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEEKKEMVLS 261

Query: 654 FMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
             +    P ++  +    +G +VSG V       +++ V       G +P + ++   + 
Sbjct: 262 IRLATPNPWQLFAEKH-NVGDVVSGRVLRYLRGGLLLLV---DRVTGLVPAQEVS--WKR 315

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
              ++ + K G     ++L  D E+ +L+LS K +L +  + +  D       S   G V
Sbjct: 316 GAKVEDLYKIGDHVKAKILRFDPEAQDLILSVKEALGDPWENVERD---FPVGSKAEGTV 372

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            NI + G FV     + G  PR      +  D+++   +G  V   +L +N    +ITLS
Sbjct: 373 VNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVLGINIVDRKITLS 432

Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
           ++ +                EE +  +Q                 G ++ GKV      G
Sbjct: 433 MRDTRPDP-----------WEEVVKNIQP----------------GQLVRGKVVTIIPQG 465

Query: 890 VVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVF 942
           V V   +   V GFI   QL+          V  G  I A ++ + +  R + LS+K + 
Sbjct: 466 VFVEIADG--VEGFIHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEERRRISLSVKAIH 523

Query: 943 IDRFREANSNRQAQKKKRKREASKDLG 969
           +D+ RE   +  +Q+ + K   S  LG
Sbjct: 524 VDKEREELQDFLSQQGEDKFTLSDVLG 550



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 137/344 (39%), Gaps = 35/344 (10%)

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 383
           +V   V  I + G+ +       G V    L +  P  N    + +   V A++L VD  
Sbjct: 196 IVRGHVSRITDEGIFVDLGDGIEGFVPKDEL-DWRPIKNIAKVFRRGDVVRAKVLSVDEE 254

Query: 384 SRAVGLTL-----NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
            + + L++     NP+ L    HN       +V        ++ VDR  GL   +P+  V
Sbjct: 255 KKEMVLSIRLATPNPWQLFAEKHNVGDVVSGRVLRYLRGGLLLLVDRVTGL---VPAQEV 311

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKA--SAFEGLVF 491
           S      + D+           YK G  V+ +IL F    + L   + +A    +E +  
Sbjct: 312 SWKRGAKVEDL-----------YKIGDHVKAKILRFDPEAQDLILSVKEALGDPWENV-- 358

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
              D   G   +G V+ +  FG  V+   G++ L P  ++S        +   +G ++  
Sbjct: 359 -ERDFPVGSKAEGTVVNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEV 417

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VLG+    ++IT++ + T       ++ +        +  G +  I   G FV   +GV
Sbjct: 418 VVLGINIVDRKITLSMRDTRPDPWEEVVKNIQPGQ---LVRGKVVTIIPQGVFVEIADGV 474

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           +GF   S+L +    +P      G  +  +++      RRI+LS
Sbjct: 475 EGFIHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEERRRISLS 518



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 154/380 (40%), Gaps = 62/380 (16%)

Query: 200 LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG 259
           L++++KE  + K WL L+ S + +G              +V  I D G  +  G     G
Sbjct: 176 LEEEQKERAE-KAWLRLKDSDIVRG--------------HVSRITDEGIFVDLG-DGIEG 219

Query: 260 FLPRNNL----AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS 315
           F+P++ L     +N     + G +++  V S+D  +K + LS       +  T +   + 
Sbjct: 220 FVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEEKKEMVLSI------RLATPNPWQLF 273

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND------YNQ 369
            +    G +VS RV   L    +L  +   TG V            +WK        Y  
Sbjct: 274 AEKHNVGDVVSGRVLRYLRG-GLLLLVDRVTGLV-------PAQEVSWKRGAKVEDLYKI 325

Query: 370 HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVK----VGDIYDQSKVVRVD 420
              V A+IL  DP ++ + L++     +P+    R  P   K    V +I D    V + 
Sbjct: 326 GDHVKAKILRFDPEAQDLILSVKEALGDPWENVERDFPVGSKAEGTVVNITDFGVFVELA 385

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
            G+  L  +P   VS   +  I++V              G  V V +LG   ++   T  
Sbjct: 386 PGIEGL--VPRRYVSWKRFKDINEVV-----------NIGDQVEVVVLGINIVDRKITLS 432

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           ++ +  +       +++PG +V+GKV+ +   G  V+   GV+    +  +S   +  P 
Sbjct: 433 MRDTRPDPWEEVVKNIQPGQLVRGKVVTIIPQGVFVEIADGVEGFIHISQLSIRRVDDPR 492

Query: 541 KKFKVGAELVFRVLGVKSKR 560
                G E+V +V+G+  +R
Sbjct: 493 DAVSEGDEIVAKVIGIDEER 512


>gi|403220619|dbj|BAM38752.1| uncharacterized protein TOT_010001225 [Theileria orientalis strain
           Shintoku]
          Length = 663

 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 154/607 (25%), Positives = 263/607 (43%), Gaps = 85/607 (14%)

Query: 89  NKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKD 148
           NK  K K+    +  ++ L +        KLP      +L++++ G  + G VA V    
Sbjct: 28  NKVNKPKSHSSLSPEINGLTTPSNYPEDYKLP------SLESLNPGSLVLGSVALVTPFG 81

Query: 149 LVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIG 208
           L I +   + G A+ ++  D +++++   +EDNL  + F VG  V C VL       E+ 
Sbjct: 82  LRIHIFNNIVGFAKYSELFD-LVESKSGGSEDNL-ASPFSVGSNVVCYVL-------EVY 132

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL---PSFTGFLPRNN 265
              + LSL+ SL+ K L    +  G++L A V S EDHG+ L F +    + +GF+  + 
Sbjct: 133 HSSVALSLKPSLVNKNLRPNNLFAGLLLPATVLSQEDHGFTLSFNVNLKSAISGFVMYD- 191

Query: 266 LAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT-VSKCV-------TKDLKGISI- 316
             E S   VK   + +    S   T  V+  S +P+  + KCV         DL   ++ 
Sbjct: 192 --EKSREGVKNEFIKRYPPSS---TAHVIVNSMNPERGLVKCVWPWEYKTPMDLHTATVF 246

Query: 317 DLLVPGMMVSTRVQSI----LEN-------GVMLSFLTYFTGTVDIFH-LQNTFPTTNWK 364
           D+L PG++++  V  +     EN       G  +  L   T  V   H L++  P  + +
Sbjct: 247 DVLKPGLLLTAEVSEVHRLKCENSYKQPLSGYTVKCLGSLTAFVSPLHSLESYKPADSAE 306

Query: 365 N---DYNQHKKVN----ARILFVDPTSRAVGLTLNPYLLHNRAPP--SHVKVGDIYDQSK 415
               + +  K+VN    AR+++VD  +R + ++L   LL  R P   +H  +       K
Sbjct: 307 GSLGNLDDCKEVNDRAEARLIYVDFEARKLYVSLQWQLLKWRGPLGLAHKNLKHTVMSCK 366

Query: 416 VVR-VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRILG 469
           VVR +  GL L  +    P ST  + +I DV +++  K         Y  G+    R+L 
Sbjct: 367 VVRSLSSGLVLEHEEEKEP-STLFFCSIKDVVDDKSLKPATILTSSTYSVGTVHDCRVLD 425

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
           F +L  L    LK S  +    +  +     +V+GK + + + GAIVQ    V    P+ 
Sbjct: 426 FNYLTRLTHVALKESVIKEKYASAFEFSASELVRGKTVKLVNSGAIVQLSSLVYGKVPVG 485

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK-----SKLAILSSYAE 582
           H+++    K  + F+ G  +  RVL       R+ +T K +LV      ++   L    +
Sbjct: 486 HLTDVPPTKVPENFQTGRNMRLRVLRFDHARNRLVLTAKPSLVNDTDPAARFDHLHVGKK 545

Query: 583 ATDRLIT---HGWITKIEKHGCFVRFYNGVQGFAPR------SELGLDPGCEPSSMYHVG 633
            T  +I      ++ + +     ++FY  +Q +  R       ELG+D            
Sbjct: 546 LTGYIINMKEKNYMDEKQNERIVIKFYGDLQTYMDRHEVERAEELGVD--------LKTD 597

Query: 634 QVVKCRI 640
            VVKC +
Sbjct: 598 SVVKCAV 604


>gi|302776674|ref|XP_002971488.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
 gi|300160620|gb|EFJ27237.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
          Length = 382

 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 76/113 (67%), Gaps = 5/113 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 147  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 206

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494
             +E++L  + S+ +S            G+IV   I  +E++G+FI++  + L 
Sbjct: 207  HIEMSLAATTSQDSS-----GWKKFGAGEIVSDCIHNIEAFGIFISLAKSCLC 254



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 80/299 (26%)

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            + WA L +S HLK  LF        SEL+ F+ RF +G     H+ S+N E+K + L L 
Sbjct: 56   DNWAWLVLSPHLKGCLF--------SELERFKERFKVGNPFQCHIRSVNHERKQVDLSLH 107

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ--------------- 1280
                      +  S++  +    +GD++G RI+++ +GVGG  VQ               
Sbjct: 108  ----------LKTSDEQFK----KGDLLGRRITRVFAGVGGHTVQGRWESFGKVHGFVKN 153

Query: 1281 ---------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
                     + P L  R+    L N  V +P        F P      G+ +  ++L I 
Sbjct: 154  VTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE-----MFPP------GKVISGRILSIE 202

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1391
                 + H+E+SL       ++T S D S             +      IV   + N+ +
Sbjct: 203  PL---SGHIEMSL-------AATTSQDSSG-----------WKKFGAGEIVSDCIHNIEA 241

Query: 1392 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
             G FI L++     V  + +S  +++     + +G+ V  ++L V+  +KR+ + +K S
Sbjct: 242  FGIFISLAKSCLCHV--AEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKAS 298


>gi|183232667|ref|XP_654947.2| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169801940|gb|EAL49568.2| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 1710

 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 194/438 (44%), Gaps = 26/438 (5%)

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           + ++D  +G+   I  T      +++   + +E    + K++K GS  + R++ +   +G
Sbjct: 318 ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFKIGSTHKGRVMYYSAFDG 374

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 375 YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 434

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
           I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 435 IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 494

Query: 594 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 495 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 550

Query: 653 SFMMKPTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 706
           +   +     + + V    ++G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 551 NLFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 609

Query: 707 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 766
             E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        +
Sbjct: 610 GDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGKY 668

Query: 767 -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        +
Sbjct: 669 IGYVSKIKGKYCFISFYNGVTILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NKK 721

Query: 826 ITLSLKQSCCSSTDASFM 843
              SLK+S   S    FM
Sbjct: 722 GIFSLKESSVGSIKEEFM 739


>gi|407044026|gb|EKE42318.1| S1 RNA binding domain containing protein, partial [Entamoeba
           nuttalli P19]
          Length = 1192

 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 194/438 (44%), Gaps = 26/438 (5%)

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           + ++D  +G+   I  T      +++   + +E    + K+++ GS  + R++ +   +G
Sbjct: 86  ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFQIGSTHKGRVMYYSAFDG 142

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 143 YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 202

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
           I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 203 IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 262

Query: 594 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 263 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 318

Query: 653 SFMMKPTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 706
           +   +     + + V    ++G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 319 NLFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 377

Query: 707 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 766
             E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        +
Sbjct: 378 GDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGKY 436

Query: 767 -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        +
Sbjct: 437 IGYVSKIKGKYCFISFYNGITILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NKK 489

Query: 826 ITLSLKQSCCSSTDASFM 843
              SLK+S   S    FM
Sbjct: 490 GIFSLKESSVGSIKEEFM 507


>gi|291227737|ref|XP_002733839.1| PREDICTED: CG5728-like [Saccoglossus kowalevskii]
          Length = 822

 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 41/284 (14%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            GQ +  YV K +N++  + I+  ++  ++ L  +    +L   ++ F  G+A    V+ I
Sbjct: 69   GQSIYCYVEKYENKFLRVDITPRMRGVVYFLHLSKNCHDLYSPEKHFKPGQAHKALVMKI 128

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            +K+ K L L L    DG       +SND     + EG +  G I+       G+ +  G 
Sbjct: 129  DKQHKKLDLSL----DGT------VSND-----LKEGAVQNGWITHKYPTELGVQLAGGN 173

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
            H  G V  T++            D+   DP+  +   QFV+C +L+     +   HV LS
Sbjct: 174  H--GNVFITDIN-----------DKYSDDPIKMFRINQFVRCCILD----CKDEKHVTLS 216

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
            LR S       N + +S     P K +  + DLS   IV+GYVK+ +  G F+ LS++L 
Sbjct: 217  LRQS-----RINHNIVSV----PDKEIRNLCDLSVGDIVKGYVKDYSEVGVFVSLSKELK 267

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
             ++ L NLS  YV    + F  GKLV  +VLS++  + ++E+++
Sbjct: 268  GRIQLKNLSSYYVNKSAEAFYCGKLVTAKVLSIDVDNSKIELSI 311



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 31/238 (13%)

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
            P+K F  GQ+  A VM +        L L        + + S   K+      G++    
Sbjct: 111  PEKHFKPGQAHKALVMKIDKQHKKLDLSL--------DGTVSNDLKE------GAVQNGW 156

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            IT   P EL ++   G HG + IT++ND  S   ++    F+I Q V   I+      D 
Sbjct: 157  ITHKYPTELGVQLAGGNHGNVFITDINDKYS---DDPIKMFRINQFVRCCIL------DC 207

Query: 1131 KKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1188
            K      LS++ S +   +  +  K +   CD+S+G  V GYV         +++S+ LK
Sbjct: 208  KDEKHVTLSLRQSRINHNIVSVPDKEIRNLCDLSVGDIVKGYVKDYSEVGVFVSLSKELK 267

Query: 1189 A--QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
               QL  L S Y    + +    F+ GK VT  VLSI+ +   + L + P   G+ D+
Sbjct: 268  GRIQLKNLSSYY----VNKSAEAFYCGKLVTAKVLSIDVDNSKIELSIHPEHTGLPDQ 321



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 41/216 (18%)

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            L V I P + G V+F  L   C            + P   +  GQ  K  V++I +    
Sbjct: 84   LRVDITPRMRGVVYFLHLSKNC---------HDLYSPEKHFKPGQAHKALVMKIDKQ--- 131

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
              H +L L  SLDG  S                     DL    +  G++ +       +
Sbjct: 132  --HKKLDL--SLDGTVSN--------------------DLKEGAVQNGWITHKYPTELGV 167

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS----DS 1452
             L+      V +++++D Y + P K F I + V   +L  +   K V ++L+ S    + 
Sbjct: 168  QLAGGNHGNVFITDINDKYSDDPIKMFRINQFVRCCILDCKD-EKHVTLSLRQSRINHNI 226

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             +    EI NL +L VGDIV G +K     G+F+++
Sbjct: 227  VSVPDKEIRNLCDLSVGDIVKGYVKDYSEVGVFVSL 262


>gi|449703272|gb|EMD43754.1| S1 RNA binding domain containing protein [Entamoeba histolytica
           KU27]
          Length = 1234

 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 196/439 (44%), Gaps = 28/439 (6%)

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           + ++D  +G+   I  T      +++   + +E    + K++K GS  + R++ +   +G
Sbjct: 456 ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFKIGSTHKGRVMYYSAFDG 512

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 513 YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 572

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
           I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 573 IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 632

Query: 594 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 633 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 688

Query: 653 SFMMKPTRVSE--DDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLA 705
           + +     V E  +D+    ++G +  G+V V     +++  I  G  +    +P   + 
Sbjct: 689 N-LFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVI 746

Query: 706 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
           D  E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        
Sbjct: 747 DGDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGK 805

Query: 766 H-GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
           + GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        
Sbjct: 806 YIGYVSKIKGKYCFISFYNGVTILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NK 858

Query: 825 RITLSLKQSCCSSTDASFM 843
           +   SLK+S   S    FM
Sbjct: 859 KGIFSLKESSVGSIKEEFM 877


>gi|164660949|ref|XP_001731597.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
 gi|159105498|gb|EDP44383.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
          Length = 1217

 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 157/726 (21%), Positives = 287/726 (39%), Gaps = 106/726 (14%)

Query: 6   RKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQR 65
           ++S+  +  D P+  + + +  K  +  +   + A+   +        FPRGGG  LT  
Sbjct: 2   KRSRSIAGHDDPQPKRKAPSHTKREEAPVAPHIAARPQMMTS------FPRGGGTGLTPV 55

Query: 66  ERDEIHAEVDAEFEAVERGLHKKNKKKK---KKTERKANETVDDLGSLFGDGISGKLPRY 122
           E  +   E   E  A +    + +++K+   K T +K N   +    +  D +  +L  Y
Sbjct: 56  EYRQSVLEGRQESAASDDLFQESSQRKRVKTKSTTQKKNRKTEAKTDVPKDRVRVELLNY 115

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEI 175
                 K +  G K++G +  ++   LV+ +   L           R  D L   LD E 
Sbjct: 116 ------KRLLPGTKVFGTILAIHPLALVVSICDQLLAHVPVTSVSKRLTDRLQSALDEEE 169

Query: 176 EANEDNL------------------------LPTIFHVGQLVSCIV--LQLDDDKKEIG- 208
           +  E +                         L  IF VGQ V   V  +     K++ G 
Sbjct: 170 KDEESDGEDIHETEEDEEEEGEDRDDSSPPELHEIFSVGQWVRASVESVTAAGSKRQWGM 229

Query: 209 ----------KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL-PSF 257
                      +++ L++  +++ +G+    +  G VL+A V+S ED+GY L  G+    
Sbjct: 230 GREGGEYERESQRVQLTMEPTIVNEGIRASDLSPGYVLSAAVQSPEDYGYTLDLGINDDV 289

Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
            GFLP  +      + +     + G  R++   R  +  S +P  V+   ++        
Sbjct: 290 HGFLPTKDRLRVGSVVLVEVSSVDG--RAV---RCQLATSGEPAPVTTAPSQSA------ 338

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            ++PG+ V   + S +  G+ +     + GTVD FH+       +        KK+ AR+
Sbjct: 339 -MLPGVPVRALITSHVPQGLSVKLFGMWDGTVDSFHVPRGLAHDDAA--LAPGKKIMARV 395

Query: 378 LFVDPT--------------SRAVGLTLNPYLLH-------NRAPPSHVKVGDIYDQSKV 416
           L+  P               +R +GL+   +++           P +H     +  + +V
Sbjct: 396 LWNMPADYEQAQEASIDAVGARRIGLSCVSHVVSLETPSAAGSVPLTHAFPIGMQLRVRV 455

Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHL 473
             V R  GL+ ++P   +  PA+V IS V++E +  L      ++ G+    R+ G    
Sbjct: 456 QAVFREWGLVCEVPGQDI--PAFVHISSVSDEHIDTLSATSGPWRVGTEHEARVTGHALT 513

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
           + L    ++AS         S+V  G VV+  +  V      V+  G V  +    H S+
Sbjct: 514 DCLLMMSMRASVLSKEFMRVSEVPIGQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSD 573

Query: 534 FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
             +  P KK+K   EL  R++       RI +T K++L+ S L +L+   +    ++T+ 
Sbjct: 574 VRLTHPEKKYKPNLELKARIIHTDPMRNRIVLTLKRSLITSDLPLLAKLEDVRVGVVTNA 633

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV---GQVVKCRIMSSIPASR 648
            + K       V     ++   P +E   D       +  +   G+VVK RI    P + 
Sbjct: 634 VVLKQLPASMLVELGGTLRAVVPFAEAS-DTAMTSEQLGELNPTGKVVKVRITKFEPETG 692

Query: 649 RINLSF 654
           RI  S 
Sbjct: 693 RIMASM 698



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 24/217 (11%)

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            LV  +G     R+H TE  +   +  L              D G    C VL + +  R 
Sbjct: 820  LVSLLGTPCRARLHATECSDSLANATLP-------------DVGDQCTCIVLSVRKKRR- 865

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
                ++S+R S        S D++  VD P   ++    L   M ++G VK VT+ G ++
Sbjct: 866  --EADVSIRPS----RLAPSDDVNASVDDP--VVDSTAQLEIGMHIRGLVKAVTNHGVYV 917

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
             L    DA+V++  L D YV+    +F +G+ V G +L +EP + ++E++LK S      
Sbjct: 918  SLGPHTDARVMIKELFDEYVKDFRTKFQVGQCVRGTILQIEP-NGQIELSLKKSRLEGVK 976

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             S     S +H G+ V   ++ +  YG+F+ ++ T++
Sbjct: 977  PS-AGAWSKIHEGEKVKAHVRGITEYGIFLQVDGTDV 1012



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 115/541 (21%), Positives = 212/541 (39%), Gaps = 48/541 (8%)

Query: 322  GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
            G +V   ++ +    + +       G V   H  +    T+ +  Y  + ++ ARI+  D
Sbjct: 539  GQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSDVR-LTHPEKKYKPNLELKARIIHTD 597

Query: 382  PTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
            P    + LTL   L+ +  P       V+VG + +   VV       +L+++  T  +  
Sbjct: 598  PMRNRIVLTLKRSLITSDLPLLAKLEDVRVGVVTN--AVVLKQLPASMLVELGGTLRAVV 655

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD-V 496
             +   SD A     +L +    G  V+VRI  F    G     +K ++   L   + D V
Sbjct: 656  PFAEASDTAMTS-EQLGELNPTGKVVKVRITKFEPETGRIMASMKQASSVYLQRLNVDAV 714

Query: 497  KPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFKVGAELVFRVL 554
              G  V  +     D    +V  P G +AL  L  +S    V   K +  + A  +   L
Sbjct: 715  DVGERVAARFAGWQDDVAILVLEPSGTRALLSLHDLSRQRRVDADKVRASLAANELLSDL 774

Query: 555  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK--IEKHGCFVRFYNGVQGF 612
             V         KK  VK  + +     +A+  +   G      +E H   +     + G 
Sbjct: 775  YVA--------KKNAVKGYVVLSYESPDASKTVEVGGRYEARVVETHHDKLYSLVSLLGT 826

Query: 613  APRSELGLDPGCEPS----SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV- 667
              R+ L     C  S    ++  VG    C ++S     R  ++S  ++P+R++  D V 
Sbjct: 827  PCRARLHATE-CSDSLANATLPDVGDQCTCIVLSVRKKRREADVS--IRPSRLAPSDDVN 883

Query: 668  --------------KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
                          ++G  + G+V  VT + V  YV    ++   +  + L D  E+   
Sbjct: 884  ASVDDPVVDSTAQLEIGMHIRGLVKAVTNHGV--YVSLGPHTDARVMIKELFD--EYVKD 939

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
             ++  + G      ++    +  + LS K S +   +      S IH    V  +V  I 
Sbjct: 940  FRTKFQVGQCVRGTILQIEPNGQIELSLKKSRLEGVKPSAGAWSKIHEGEKVKAHVRGIT 999

Query: 774  ETGCFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            E G F++  G  ++G   +S+  D + A+  + + VG  V++ +L ++++  R+   LK 
Sbjct: 1000 EYGIFLQVDGTDVSGLCHKSELSDNKSANAIRAFAVGDRVKAVVLKMDADKRRVAFGLKP 1059

Query: 833  S 833
            S
Sbjct: 1060 S 1060



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 638 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
           C +M S+ AS  ++  FM    RVSE   V +G +V   +  VTP A+  +V   G   G
Sbjct: 515 CLLMMSMRASV-LSKEFM----RVSE---VPIGQVVRVSIRKVTPKAI--FVRMNGNVDG 564

Query: 698 TIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD 755
            +   H +D  L H    +   KP  E    ++  D   + ++L+ K SLI S   L + 
Sbjct: 565 VVFPMHFSDVRLTHP---EKKYKPNLELKARIIHTDPMRNRIVLTLKRSLITSDLPLLAK 621

Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-----QRADLSKTYYVGQ 810
              +    V +  V   +     V   G L    P ++A D      Q  +L+ T   G+
Sbjct: 622 LEDVRVGVVTNAVVLKQLPASMLVELGGTLRAVVPFAEASDTAMTSEQLGELNPT---GK 678

Query: 811 SVRSNILDVNSETGRITLSLKQS 833
            V+  I     ETGRI  S+KQ+
Sbjct: 679 VVKVRITKFEPETGRIMASMKQA 701



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 37/244 (15%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G   T  VLS+ K+++   + +RP +   SD      +D +     + +I G  I  ++
Sbjct: 849  VGDQCTCIVLSVRKKRREADVSIRPSRLAPSDDVNASVDDPVVDSTAQLEI-GMHIRGLV 907

Query: 1272 SGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
              V   G+ V +GPH   RV   EL           +DE   D  + +  GQ V+  +L+
Sbjct: 908  KAVTNHGVYVSLGPHTDARVMIKEL-----------FDEYVKDFRTKFQVGQCVRGTILQ 956

Query: 1330 ISRTVRGTFHVELSLRSS-LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
            I         +ELSL+ S L+G+  +  +              KI +      V+ +V+ 
Sbjct: 957  IE----PNGQIELSLKKSRLEGVKPSAGA------------WSKIHE---GEKVKAHVRG 997

Query: 1389 VTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
            +T  G F+ +    D   L   S LSD    +  + F +G  V   VL ++   +RV   
Sbjct: 998  ITEYGIFLQVD-GTDVSGLCHKSELSDNKSANAIRAFAVGDRVKAVVLKMDADKRRVAFG 1056

Query: 1447 LKTS 1450
            LK S
Sbjct: 1057 LKPS 1060



 Score = 40.8 bits (94), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 43/83 (51%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            K   ++ ++    +V+  ++ VT K  F+ ++  +D  V   + SD  +  PEK++    
Sbjct: 528  KEFMRVSEVPIGQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSDVRLTHPEKKYKPNL 587

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTS 1450
             +  R++  +P+  R+ +TLK S
Sbjct: 588  ELKARIIHTDPMRNRIVLTLKRS 610


>gi|195035980|ref|XP_001989449.1| GH18799 [Drosophila grimshawi]
 gi|193893645|gb|EDV92511.1| GH18799 [Drosophila grimshawi]
          Length = 1396

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 120/537 (22%), Positives = 235/537 (43%), Gaps = 42/537 (7%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA-----ADALDPILDNEI-- 175
           A  +T   +   M + GVV       L I LPG  R +ARA     +DA   +  + +  
Sbjct: 60  AESLTFDTLQEHMLVMGVVKSATATSLQIALPG--RMMARALVADISDAYARVAQSYMGG 117

Query: 176 EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 235
           + +E + L  +F  G++V    ++   D++E     + L+L+ + +   L   ++++G +
Sbjct: 118 DDSEYHDLSELFKEGRIVYGRAMK--TDRQEGKSSTLLLTLKPADVNSSLRHGSIKKGFI 175

Query: 236 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVV 294
            T  ++ I++HG ++  G+     F+P  ++A+   I     L ++ +  + +R T + +
Sbjct: 176 FTGAIEEIQEHGCVIETGIQGLQAFMPNEDVAQQHHIGELIFLKVKQIQHNAERSTCQCI 235

Query: 295 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFH 353
            L  D     K   K     ++D ++PG +V  +V   L+NG+  S +   F G V+  +
Sbjct: 236 QLEQD-----KLKIKSQNETNLDYILPGSIVKFKVSKQLKNGLEGSIMNESFRGYVNEHY 290

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVG 408
           L     T     DY  +++  AR+L+V P ++ V LT N  +               K G
Sbjct: 291 LSEALYTP---QDYEVNEEYLARVLYVMPLTKLVYLTFNLNIGVTAEQEAADEEELPKKG 347

Query: 409 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK--LEKKYKEGSCVRVR 466
            I ++++V+R   G G++L +        +Y +I    +    +  +  KY   S   VR
Sbjct: 348 TIVEKARVLRHGTG-GIILLLNRKHKGLISYSSIKSNFKGNYDQDVVLSKYSNKSKHTVR 406

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS-FGAIVQFPGGVKAL 525
           +LG+  +E L       +     ++   D+  G +V  +++  DS  G      G V  +
Sbjct: 407 VLGYDVIESLYYCTDNPNVVNEKLYMLDDLLAGDIVSARIVKPDSKIGGYCVKIGNVNGI 466

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEA 583
                ++      P   +++G  L  RVL + ++R    ++++   +     +L++   A
Sbjct: 467 IEQMQLA------PNVHYEIGQCLRCRVLDICTERKICYLSNRSEYLSKSAKLLTTLQSA 520

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
               +  G + K E     V+F NG++G   +  L    G   ++ +  GQ  K RI
Sbjct: 521 HSGNLFTGTVVKCEPTYILVKFCNGLKGVLHKQRLN---GLMEATFFE-GQTTKFRI 573


>gi|167386167|ref|XP_001737645.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165899481|gb|EDR26067.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 1725

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 131/588 (22%), Positives = 252/588 (42%), Gaps = 50/588 (8%)

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           + ++D  +G+   I  T      +++   + +E    + K++K GS  + RI+ +   +G
Sbjct: 328 ITKIDENVGI---IGETEDKEEVFLSKKQIKDEYCLDIPKEFKIGSIHKGRIMYYSAFDG 384

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + S       + +D+K GM+++G +  ++  G  V+    +   C   +  +  
Sbjct: 385 YCGITTRESILSDKYQSINDIKSGMIIEGIIKEINENGINVKIGEKIYGFCDKINSGDIP 444

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
           I      FK   +  FRVL V ++   I +THK+TL+K    I+++  E     IT G +
Sbjct: 445 IEDLKSVFKKDQKSKFRVLTVNNRNNSIYLTHKRTLMKLTTPIITNIEETELNTITFGIV 504

Query: 594 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 505 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKIRIISFDKQLLLCSL 560

Query: 653 SFMMKPTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 706
           +   +     + + V    K+G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 561 NLFPEENVPEKYEDVSRHFKVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 619

Query: 707 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 766
             E   + K +I+ G    + L+L N+   ++++ K SLI+  Q++    S        +
Sbjct: 620 GDEGKDIPK-MIRNGTIIKECLLLKNQMGQMIITTKKSLISLRQKIGKFNSKEEMTVGKY 678

Query: 767 -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            GYV  I    CF+ F   +T    R    D     + +    GQ+V   +   N     
Sbjct: 679 IGYVSKIKGKYCFISFYNGVTIVCYRMNVSDSNLP-IEEVLENGQTVYGYLNKKN----- 732

Query: 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIG--------- 875
              SLK+S   S    +M    L  E+    +       E+K ++G+ IIG         
Sbjct: 733 -IFSLKESSVGSIKEEYM---LLRIERDVEPKYGSQIKIEIKDIKGYGIIGKSKEREETI 788

Query: 876 ----SVIEGKVHE----SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV 927
               + IEG + E    SN   +V+  ++   +   I    +   ++E   + +  ++ +
Sbjct: 789 FIPKTGIEGDIKEISKGSNMKCIVIGVDKERKMIDCIQEKMIKKESIEINKIYKGKVI-I 847

Query: 928 AKAERLVDL-SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            K E  V L     VF+++ R  N  +   K++ +    K++  +Q +
Sbjct: 848 NKEEYCVCLVEGNIVFVNKIR-MNGGKYIVKEEVEINIGKEMEGYQNI 894


>gi|270007539|gb|EFA03987.1| hypothetical protein TcasGA2_TC014136 [Tribolium castaneum]
          Length = 1062

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 183/416 (43%), Gaps = 27/416 (6%)

Query: 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YNQHKK 372
           +SI  L+PGM V   V+ IL +G+           VD      TF  +  K +   + K 
Sbjct: 5   LSISDLIPGMKVDFFVEEILPHGIKGQLAENCYAYVD-----ETFTFSRIKKERIKEGKS 59

Query: 373 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
           + A +LFV+P ++   L+L       + P   + +G +     +  V +GL L L+   T
Sbjct: 60  IPAYVLFVEPVTKVTYLSLRGL---EKLPEPELTIGQVCSAQILYNVPKGLYLQLNQTET 116

Query: 433 PVSTPAYV--TISDVAEEE-VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 489
              +   +  T+   A+ + V  + KKY  GS  + R+L + H++ L     +    +  
Sbjct: 117 GFISNKRLLKTLPKGADVDIVSAIRKKYPNGSRHQCRVLDYNHMQQLYICTFEKQVIKEK 176

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFKVGAE 548
           +FT SD+K G  V  +V  V + G I +  G V+   P   +S  +  +  K KF VG  
Sbjct: 177 IFTVSDLKIGQAVTAQVTKVVTNGLITKV-GHVQGFVPNLQLSNAKFTQNIKAKFTVGMT 235

Query: 549 LVFRVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +  RVL +    + +T K+ LV+S   LA L      +  +   G++ +++  G  V FY
Sbjct: 236 VNARVLNITDGNVILTLKQGLVESDKCLATLEQLIPCSQYV---GFVVQVKVAGALVAFY 292

Query: 607 NGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
             ++G+     L         +P   + +GQVV   ++      +   L   +   +   
Sbjct: 293 GDIKGWISNRVLNHASSGHYLDPREYFFIGQVVTVWVL----GIKNDKLHLSLNAPKGQN 348

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
              +K+G   +G V  +  + + V  ++    K TIP  HL+ +L    V+ ++++
Sbjct: 349 KHKIKIGQTDNGSVTKIHSDGLDVK-LSNYEVKATIPLAHLSTNLSLCPVLLTILQ 403


>gi|194770786|ref|XP_001967469.1| GF20724 [Drosophila ananassae]
 gi|190618479|gb|EDV34003.1| GF20724 [Drosophila ananassae]
          Length = 1424

 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 190/872 (21%), Positives = 349/872 (40%), Gaps = 90/872 (10%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEIEANE 179
           A  + +  +   M + GVV  V    L + LPG +      AD   A   +    +  + 
Sbjct: 63  AETLNMDTLQEDMLVMGVVKGVTPTALQVALPGRMFARTLVADISEAYTRVAKAAMSGDT 122

Query: 180 DNL--LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
            +   L  +F  G++V    ++ D  K    +  + LSL+ S ++  L  + +++G + +
Sbjct: 123 TDYHDLTELFQPGRIVYGRAIKTD--KLNCNRTTLLLSLKPSEVHSSLHHKNIKKGFIFS 180

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 297
             V+ I++HGY++  G+     F+      E S   +  G L    V+ I         +
Sbjct: 181 GAVEEIQEHGYVIETGVQGLQAFVA----CEESKQSLHVGQLAFVKVQQIQHDTHKSTCT 236

Query: 298 SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQN 356
                 S+   K     ++D ++PG +V  +V   L++G+  S +   F    +  HL +
Sbjct: 237 CVLVDQSQLKVKSQNESNLDYILPGSIVRFKVSKHLKDGLKGSIMNESFAAYTNEHHLAS 296

Query: 357 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH------------ 404
              T    + Y  ++   AR+L+V P ++ V LTLN   L  +  P              
Sbjct: 297 PLDTL---DAYELNQDYYARVLYVMPLTKLVYLTLN---LDIKTDPETGIQQDDADGDEE 350

Query: 405 ---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKE 459
              +KVG + +++KV+R+  G G++L +        ++ +I    +    K E   KY  
Sbjct: 351 LEPLKVGSVVEKAKVLRLGSG-GVVLLLNKKLKGIISFKSIRSNYKGNYDKDEVLSKYGR 409

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-DSFGAIVQF 518
            +  +VRILG+  +E +       +     VF+ +D+  G +V  K++   D        
Sbjct: 410 KTKHKVRILGYDVIESMYYCSDAPNVVNEKVFSLTDISAGDIVTAKIVKKNDKINGWTLK 469

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAI 576
            G V A     +++      P  +++ G  L  RVL V S R    ++++   +   L +
Sbjct: 470 IGKVNATLEQLYLA------PNVRYEAGQPLRCRVLEVNSDRKICYLSNRSEYLAKGLKL 523

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
           L+  + A    +  G + + + H   V+F +G++G   R  +      +  S +  GQ  
Sbjct: 524 LTDLSSAQVGGVYTGTVVRCDDHLVLVKFGSGIEGVLYRQNM------KGQSSFFEGQTT 577

Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
           K RI+S      +I L+      ++ E   V++ + +   +++    A            
Sbjct: 578 KFRILSR--NKDKITLTLPEDKFQLGEICPVEITNTLDAGLEIKITYAAEEDKEDDEEDG 635

Query: 697 --------GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS 748
                   G IP   L+DHLE       V   G   +   ++ N          +SL + 
Sbjct: 636 DPKVEEFVGLIPLRLLSDHLELLQAQVRVHPVGSLTEAACIVQN---------IFSLRDV 686

Query: 749 AQ---QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF-APRSKAVDGQRADLSK 804
           A    Q+  D   +    ++  YV N  E    V  +  +  +  P    V   R +  K
Sbjct: 687 AYFSGQITKDWKSVQVGDIIRSYVKNATEQ--VVDLMVSVRNYNKPVKVHVKMLRLNAVK 744

Query: 805 TYYV----GQSVRSNILDVNSETGRITLSLKQSCCSS---TDASFMQEHFLLEEKIAMLQ 857
              V     Q +   +L    ET  +T+S K +   S   TD +   E +L  +++A ++
Sbjct: 745 NTPVELVPEQLLMVKVLSKEPETKTLTVSAKLTDVWSGDLTDTAKSVERYL--DEVAQIR 802

Query: 858 SSKHNGSE--LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV- 914
           +     S    K+  G  I  V +G   ES+D+  V + E  S     +       AT  
Sbjct: 803 TGLKEISAPIAKYSVGEKINVVFQGINSESHDW--VYTVEGSSKTSALLLSSLAGTATAP 860

Query: 915 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
            +GS   A +L V  +  ++ +S K V IDR 
Sbjct: 861 PTGSKHPAVVLWVDYSSDVLLISNKKVDIDRI 892


>gi|302776682|ref|XP_002971492.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
 gi|300160624|gb|EFJ27241.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
          Length = 883

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 74/109 (67%), Gaps = 5/109 (4%)

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444
            +VKNV  KGCF++L+  L+A++ L NL + +V++P + FP GK++ GR+LS+EPLS  +E
Sbjct: 174  FVKNVMEKGCFVVLAPSLEARIQLKNLLNSFVQNPAEMFPPGKVILGRILSIEPLSGHIE 233

Query: 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            ++L  + S+ +S            G+IV G+I  +E++G+FI++  +++
Sbjct: 234  MSLAATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDV 277



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 142/340 (41%), Gaps = 103/340 (30%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            +V + + +  YV +V + WA L +S HLK  LF        SEL+ F+ RF +G     H
Sbjct: 46   NVHMTESIIRYVQEVKDNWAWLVLSPHLKGCLF--------SELERFKERFKVGDPFQCH 97

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            + S+N E+K +   L P       KT D      + F  +GD++G RI+++ +GVGG  V
Sbjct: 98   IRSVNHERKQVDFALHP-------KTSD------EQF-KKGDLLGRRITRVFAGVGGHTV 143

Query: 1280 QIGPHLYGRVHFT---------------------------------------ELKNICVS 1300
            Q     +G+VH T                                       +LKN+   
Sbjct: 144  QGRWESFGKVHVTIHGLMTQPVYLQRDSSVFVKNVMEKGCFVVLAPSLEARIQLKNL--- 200

Query: 1301 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
              L+ + +   +P   +  G+ +  ++L I      + H+E+SL       ++T S D S
Sbjct: 201  --LNSFVQ---NPAEMFPPGKVILGRILSIEPL---SGHIEMSL-------AATTSQDSS 245

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL----------SN 1410
                         +      IV G + N+ + G FI L+   ++ V L          S 
Sbjct: 246  G-----------WKKFGAGEIVSGRIHNIEAFGIFISLA---ESDVFLVCAPGCLCHVSE 291

Query: 1411 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            +S  +++     + +G+    ++L V+  +KR+ + +K S
Sbjct: 292  VSYDFIQDLSTLYKVGQWAQVKILKVDVETKRISLGMKAS 331


>gi|71032243|ref|XP_765763.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352720|gb|EAN33480.1| hypothetical protein TP01_0236 [Theileria parva]
          Length = 690

 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 133/520 (25%), Positives = 211/520 (40%), Gaps = 75/520 (14%)

Query: 85  LHKKNKKKKKKTERKANETVDDLGSLFGDGISG--KLPRYANKITLKNISAGMKLWGVVA 142
           L K  K K  K  +K  E + +   +FG   S   KLP      TL + + G  + G VA
Sbjct: 27  LSKFQKNKTNKPSKKDEEDISE--GIFGSNCSDDVKLP------TLDSFTPGTLVLGSVA 78

Query: 143 EVNEKDLVICLPGGLRGLARAADALDP----ILDNEIEANEDNLLPTIFHVGQLVSCIVL 198
            V    L I L   + G A+  D  D       ++ +  + DN L + F VG  V C VL
Sbjct: 79  LVCPYGLRIHLLNNIVGFAKYTDLFDSADSSSNNSNLGHDRDNKLNSPFKVGSTVICYVL 138

Query: 199 QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG-LPSF 257
           +       +    + LSL+ SL+ + L ++ +  G+VL A V S EDHG  + F  L + 
Sbjct: 139 K-------VNYSYLSLSLKPSLINRDLRVDNMYPGLVLPATVVSQEDHGLSIKFNTLSTL 191

Query: 258 TGFLP---------RNNLAENSGID--VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
            GF+          +N L  N  I+  V   ++     R   + +   +  +  +T +  
Sbjct: 192 NGFVKYDEQGRESVKNILKTNYPINSTVYVSVVTVNSEREFVKCQWPWHYKTPANTDTSL 251

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV---------------DI 351
           V         D+L PG++++  V ++    +  S  + F G                  I
Sbjct: 252 V--------FDMLKPGLLLTAEVLNVHSLPLEASNKSIFAGYTVKCLGSIKAPISSLHSI 303

Query: 352 FH--LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV--KV 407
            H  L N     +  +   +   V  RI++VD  S+ + L++   +L  R P       +
Sbjct: 304 THDILSNEVEMEDLYSLVGEM--VECRIIYVDFESKKLYLSMQSQILRWRGPLGQAFKPI 361

Query: 408 GDIYDQSKVVRVDRGLGLLLDIP--------STPVSTPAYVTISDVAE-----EEVRKLE 454
            +   + K+++      LL  IP        +       Y  I DV +     EE     
Sbjct: 362 PNKIIKCKIIQCFSSGFLLESIPPAGDDINNADKRVLHCYCAIGDVLDDKSLTEETIFSS 421

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
            KY  GS    R++ F H   L    LK+S       T  ++    +V GK+I + + GA
Sbjct: 422 NKYSVGSEHECRVIEFDHFTRLTRVSLKSSLISEDYVTPFELSASDIVTGKIINLVNTGA 481

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           IVQ    V    PL H+++F + K  + FKVG  L  RVL
Sbjct: 482 IVQISSLVFGKVPLGHLTQFPVSKLPEGFKVGKNLKLRVL 521


>gi|300871842|ref|YP_003786715.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
 gi|300689543|gb|ADK32214.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
          Length = 556

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 554 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 613 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           + +D +   + LS K++  +  +    D +H H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAHPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV 299



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31   VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 705
            +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78   QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 706  -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 762
               ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136  FSQIDISRGIKEADYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195  DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255  KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 883  HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
                 FG  V+  E      H     + +H       V+ GS ++  ILD+   ER + L
Sbjct: 288  TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTL 347

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
             LK V               K      A +D  V  +V   V+ + +++ V  LP  N  
Sbjct: 348  GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELP--NGL 390

Query: 997  IGYASVSDYN 1006
             G   +SD++
Sbjct: 391  EGICDISDFD 400


>gi|147816462|emb|CAN64048.1| hypothetical protein VITISV_019942 [Vitis vinifera]
          Length = 378

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 5/77 (6%)

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            DV S  + EITEIKP EL+LK GIGFHGR+HITEV D+  NV+EN F N +IGQTV  RI
Sbjct: 191  DVNS--ETEITEIKPFELKLKLGIGFHGRVHITEVCDE--NVIENPFGNLRIGQTVFGRI 246

Query: 1122 IAKSNKPDMK-KSFLWE 1137
            +AK+NK +   K+  WE
Sbjct: 247  VAKANKSENNGKNHQWE 263


>gi|431807379|ref|YP_007234277.1| 30S ribosomal protein S1 [Brachyspira pilosicoli P43/6/78]
 gi|434382057|ref|YP_006703840.1| 30S ribosomal protein S1 [Brachyspira pilosicoli WesB]
 gi|404430706|emb|CCG56752.1| 30S ribosomal protein S1 [Brachyspira pilosicoli WesB]
 gi|430780738|gb|AGA66022.1| 30S ribosomal protein S1 [Brachyspira pilosicoli P43/6/78]
          Length = 556

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 554 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 613 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           + +D +   + LS K++  +  +    D +H H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAHPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV 299



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31   VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 705
            +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78   QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 706  -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 762
               ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136  FSQIDISRGIKEADYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195  DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255  KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 883  HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
                 FG  V+  E      H     + +H       V+ G+ ++  ILD+   ER + L
Sbjct: 288  TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTL 347

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
             LK V               K      A +D  V  +V   V+ + +++ V  LP  N  
Sbjct: 348  GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELP--NGL 390

Query: 997  IGYASVSDYN 1006
             G   +SD++
Sbjct: 391  EGICDISDFD 400


>gi|429328605|gb|AFZ80365.1| hypothetical protein BEWA_032180 [Babesia equi]
          Length = 649

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 126/522 (24%), Positives = 221/522 (42%), Gaps = 79/522 (15%)

Query: 87  KKNKKKKKKTERKANETV-----DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVV 141
           KK++K+ KK +     TV     D   S   D  S + PR      L+ I+ G  + G V
Sbjct: 19  KKDRKQIKKQKALGEPTVVESTNDKPPSDALDKFSYRTPR------LETITVGSLVLGSV 72

Query: 142 AEVNEKDLVICLPGGLRGLARAADAL-DPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL 200
           A V    + +     + G  + AD + DP       A +   +P  F +G  V C VL  
Sbjct: 73  ALVTSTGIRVHTLNNIVGFVKNADMVEDP-------AVKTASVP--FSIGSNVVCYVL-- 121

Query: 201 DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF------GL 254
                E+   ++ LS++ SL+ + LS   +  G++L + V S +DHG ++ F      GL
Sbjct: 122 -----EVKNGQLVLSMKPSLINRYLSFGNLAPGVLLPSTVISHQDHGVMVSFNVEDKNGL 176

Query: 255 PSFTGFLPRNNLAENSGIDVKPGLLLQG--------VVRSIDRTRKVV-----YLSSDPD 301
             F  +  R +  E +   V   L+ +         VV S++  RK+V     +L   P 
Sbjct: 177 EGFVMYDERED-GEEARESVVSELVKRYPVSSTAYVVVTSVNEERKIVKCKWPWLHKSPV 235

Query: 302 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSI----------LENGVMLSFLTYFTGTVDI 351
           +++         +S D + PG+++   V  +          L  G  +S L   +  +  
Sbjct: 236 SINN-------PLSFDAVKPGLLLHGEVSKVHEKSLDYGLSLPTGYTISCLGSLSAYIPA 288

Query: 352 FHLQNTFPTTNWKNDYNQ---HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV-KV 407
                +F  ++  +D ++   H KV AR+ ++D   + + ++L  +L+  + P  H  K 
Sbjct: 289 SDSLESFKDSDEASDSHEPSMHDKVTARVTYIDSAEKRIHVSLLSHLIKWKGPSGHARKA 348

Query: 408 GDIYDQSKVVR--VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE-------KKYK 458
             + +  KVV+   + GL LL++  S   +   +  I+DV ++  R ++       K Y 
Sbjct: 349 KGLSNTCKVVKNIPNYGLVLLINNESGEGAEVGFAGINDVIDKS-RDMKIASVLSGKTYA 407

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
            G+    RIL +          LK S          ++  G VV GK+  V + G IV+ 
Sbjct: 408 VGTVHSCRILQYSCFSRWNIVSLKESLLNEQYVDPLELSGGDVVDGKITKVLNNGVIVEI 467

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
              V    P+ H+++  + +   +F VG  L  RVL    +R
Sbjct: 468 STRVHGSVPISHLTQVPLTQIPDRFHVGKTLKLRVLRFDYQR 509


>gi|374856887|dbj|BAL59740.1| 30S ribosomal protein S1 [uncultured candidate division OP1
            bacterium]
          Length = 567

 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 188/454 (41%), Gaps = 75/454 (16%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            +L LD    NL++S +  L    +Q   +  S + P  V+ G + +I++ G FV  +G  
Sbjct: 167  ILELDRRERNLVVSHREYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVD-IGGF 225

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
             G   RS+           TY VG  V   +L V+    RI+LS+KQ             
Sbjct: 226  EGLVHRSEISWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQLRPDP-------- 277

Query: 846  HFLLEEKIAMLQSSKHNGSELKWV---EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 902
                                  W+   + +  G+   G V    DFG  V  EE  DV G
Sbjct: 278  ----------------------WIGLKQRYPAGTKTTGTVVSLTDFGAFVRIEE--DVEG 313

Query: 903  FITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
             +   +L+          V+ G  ++  +LDV + ER V LS+K V  D + +       
Sbjct: 314  LVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKI------ 367

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQF 1015
              +++  E S    VH  V  + +        + L +   ++ + S   ++    P    
Sbjct: 368  --EEKYPEGSI---VHGRVTKLADF----GAFVHLEDGVEALLHISEMSWDKVNKPSDVV 418

Query: 1016 LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 1075
              GQ + A V+   S ++  ++ L LK + E         K   SY VGS+V+  ITE+K
Sbjct: 419  TEGQEITAKVIK--SDASKRKIRLSLKELQE-----DPWHKFLESYSVGSIVEGPITELK 471

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
                 +K      G IH++E+ D++     ++    ++GQTV ARII  + +    +  +
Sbjct: 472  DFGAFMKITDDVEGLIHVSEITDERIATPADV---LQVGQTVKARIIGINEEKRQVRLSM 528

Query: 1136 WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169
              L  +  ++T S+ G +       +++G+R+ G
Sbjct: 529  RNLHKQEHLVTSSDAGHEA------ITMGERIKG 556



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 166/384 (43%), Gaps = 41/384 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++PG V++G + ++  FG  V   GG + L     +S  +I  P   +KVG ++  +V
Sbjct: 198 SKLQPGQVIEGTIKSIVDFGLFVDI-GGFEGLVHRSEISWKDIPVPPNTYKVGDKVTVKV 256

Query: 554 LGV-KSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           LGV +SK RI+++ K+      + +   Y   T    T G +  +   G FVR    V+G
Sbjct: 257 LGVDRSKERISLSIKQLRPDPWIGLKQRYPAGTK---TTGTVVSLTDFGAFVRIEEDVEG 313

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-- 669
               SEL       P  +  VGQ V+  ++      RR++LS      RV  D   K+  
Sbjct: 314 LVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSM----KRVQPDPWEKIEE 369

Query: 670 ----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEF 724
               GS+V G V  +      V++       G     H+++   +       V+  G E 
Sbjct: 370 KYPEGSIVHGRVTKLADFGAFVHL-----EDGVEALLHISEMSWDKVNKPSDVVTEGQEI 424

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-----IHPNSVVHGYVCNIIETGCFV 779
              ++  +       ++K  +  S ++L  D  H         S+V G +  + + G F+
Sbjct: 425 TAKVIKSD-------ASKRKIRLSLKELQEDPWHKFLESYSVGSIVEGPITELKDFGAFM 477

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-----QSC 834
           +    + G    S+  D + A  +    VGQ+V++ I+ +N E  ++ LS++     +  
Sbjct: 478 KITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNLHKQEHL 537

Query: 835 CSSTDASFMQEHFLLEEKIAMLQS 858
            +S+DA    E   + E+I  L+ 
Sbjct: 538 VTSSDAG--HEAITMGERIKGLKE 559



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 178/432 (41%), Gaps = 45/432 (10%)

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 299
            ++D GY ++        FLP ++L E+    I+   G  +  ++  +DR  + + +S  
Sbjct: 123 EVKDAGYHVNLLKSGIRAFLPGSHLGEDLTPNIEELRGKEVPFIILELDRRERNLVVSHR 182

Query: 300 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
                K + +  K      L PG ++   ++SI++ G+ +  +  F G V    +     
Sbjct: 183 --EYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVD-IGGFEGLVHRSEI----- 234

Query: 360 TTNWK------NDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKV 407
             +WK      N Y    KV  ++L VD +   + L++     +P++ L  R P      
Sbjct: 235 --SWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQLRPDPWIGLKQRYPAGTKTT 292

Query: 408 GDIY---DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
           G +    D    VR++  +  L+ I       P +         EV K+      G  V 
Sbjct: 293 GTVVSLTDFGAFVRIEEDVEGLVHISELSWGYPEH-------PREVVKV------GQQVE 339

Query: 465 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
           V +L     E   +  +K    +           G +V G+V  +  FGA V    GV+A
Sbjct: 340 VVVLDVNEQERRVSLSMKRVQPDPWEKIEEKYPEGSIVHGRVTKLADFGAFVHLEDGVEA 399

Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAE 582
           L  +  MS  ++ KP      G E+  +V+      ++I ++ K+         L SY+ 
Sbjct: 400 LLHISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYSV 459

Query: 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
            +   I  G IT+++  G F++  + V+G    SE+  +    P+ +  VGQ VK RI+ 
Sbjct: 460 GS---IVEGPITELKDFGAFMKITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIG 516

Query: 643 SIPASRRINLSF 654
                R++ LS 
Sbjct: 517 INEEKRQVRLSM 528



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 21/232 (9%)

Query: 457 YKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
           YK G  V V++LG  R  E ++  I  L+   + GL   +     G    G V+++  FG
Sbjct: 246 YKVGDKVTVKVLGVDRSKERISLSIKQLRPDPWIGLKQRYP---AGTKTTGTVVSLTDFG 302

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
           A V+    V+ L  +  +S      P +  KVG ++   VL V  + +R++++ K+    
Sbjct: 303 AFVRIEEDVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPD 362

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
               I   Y E +   I HG +TK+   G FV   +GV+     SE+  D   +PS +  
Sbjct: 363 PWEKIEEKYPEGS---IVHGRVTKLADFGAFVHLEDGVEALLHISEMSWDKVNKPSDVVT 419

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK------LGSLVSGVV 677
            GQ +  +++ S  + R+I LS       + ED   K      +GS+V G +
Sbjct: 420 EGQEITAKVIKSDASKRKIRLSL----KELQEDPWHKFLESYSVGSIVEGPI 467



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 186/443 (41%), Gaps = 70/443 (15%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK---KTLVKSKLA 575
           G++A  P  H+ E   + P  +   G E+ F +L +  + + + V+H+   K L + K  
Sbjct: 137 GIRAFLPGSHLGED--LTPNIEELRGKEVPFIILELDRRERNLVVSHREYLKELERQKKE 194

Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
            L S  +     +  G I  I   G FV    G +G   RSE+       P + Y VG  
Sbjct: 195 ELFSKLQPGQ--VIEGTIKSIVDFGLFVDI-GGFEGLVHRSEISWKDIPVPPNTYKVGDK 251

Query: 636 VKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVY 688
           V  +++    +  RI+LS   ++P     D  + L      G+  +G V  +T     V 
Sbjct: 252 VTVKVLGVDRSKERISLSIKQLRP-----DPWIGLKQRYPAGTKTTGTVVSLTDFGAFVR 306

Query: 689 VIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLL-LSAKYSL 745
           +  +   +G +    L+  + EH    + V+K G +  +++VLD NE    + LS K   
Sbjct: 307 I--EEDVEGLVHISELSWGYPEHP---REVVKVGQQV-EVVVLDVNEQERRVSLSMKRVQ 360

Query: 746 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            +  +++          S+VHG V  + + G FV     +      S+    +    S  
Sbjct: 361 PDPWEKIEEKYPE---GSIVHGRVTKLADFGAFVHLEDGVEALLHISEMSWDKVNKPSDV 417

Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
              GQ + + ++  ++   +I LSLK+                       LQ    +   
Sbjct: 418 VTEGQEITAKVIKSDASKRKIRLSLKE-----------------------LQEDPWH--- 451

Query: 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLA--GATVESGS 918
            K++E + +GS++EG + E  DFG  +   +  DV G      IT  ++A     ++ G 
Sbjct: 452 -KFLESYSVGSIVEGPITELKDFGAFMKITD--DVEGLIHVSEITDERIATPADVLQVGQ 508

Query: 919 VIQAAILDVAKAERLVDLSLKTV 941
            ++A I+ + + +R V LS++ +
Sbjct: 509 TVKARIIGINEEKRQVRLSMRNL 531



 Score = 47.8 bits (112), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 172/402 (42%), Gaps = 60/402 (14%)

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
            E    K+ +  S    G +++  I  I    L +  G GF G +H +E++     V  N 
Sbjct: 187  ELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVDIG-GFEGLVHRSEISWKDIPVPPN- 244

Query: 1108 FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
               +K+G  VT +++      D  K  +  LSIK  +     IG K  +       G + 
Sbjct: 245  --TYKVGDKVTVKVLGV----DRSKERI-SLSIK-QLRPDPWIGLKQRY-----PAGTKT 291

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAY-EPSELQEFQRRFHIGKAVTGHVLSINKE 1226
            TG V  + +  A + I   ++  + I + ++  P   +E  +   +G+ V   VL +N++
Sbjct: 292  TGTVVSLTDFGAFVRIEEDVEGLVHISELSWGYPEHPREVVK---VGQQVEVVVLDVNEQ 348

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            ++ + L ++  Q    +K        ++    EG IV GR++K+     G  V +   + 
Sbjct: 349  ERRVSLSMKRVQPDPWEK--------IEEKYPEGSIVHGRVTKLADF--GAFVHLEDGVE 398

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
              +H +E+    V+ P         D ++   EGQ +  KV++   + R    + LSL+ 
Sbjct: 399  ALLHISEMSWDKVNKP--------SDVVT---EGQEITAKVIKSDASKR---KIRLSLK- 443

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
                       +L  D   P      +E  S   IV+G +  +   G F+ ++  ++  +
Sbjct: 444  -----------ELQED---PWHKF--LESYSVGSIVEGPITELKDFGAFMKITDDVEGLI 487

Query: 1407 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
             +S ++D  + +P     +G+ V  R++ +    ++V ++++
Sbjct: 488  HVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMR 529



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 99/468 (21%), Positives = 187/468 (39%), Gaps = 67/468 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE--IVKPGKKFKVGAELVFRVLGV 556
           G +++G+V+ V   G +V      +AL     ++ F    ++PG +     E++   +  
Sbjct: 30  GDILRGRVVQVSDQGVLVDIGYKSEALMKPTELAPFHKAPLQPGDEI----EVLITYIDE 85

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT-KIEKHGCFVRFY-NGVQGFAP 614
           +   I V+ K  L + +++ L        RL   G I  +++  G  V    +G++ F P
Sbjct: 86  EEGTIHVSEKAALYEKRISELERAYRH--RLPITGTIEDEVKDAGYHVNLLKSGIRAFLP 143

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL---VK 668
            S LG D    P+     G+ V   I+      R + +S   ++ +  R  +++L   ++
Sbjct: 144 GSHLGED--LTPNIEELRGKEVPFIILELDRRERNLVVSHREYLKELERQKKEELFSKLQ 201

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QL 727
            G ++ G +  +    + V +   G  +G +    ++   +   V  +  K G +   ++
Sbjct: 202 PGQVIEGTIKSIVDFGLFVDI---GGFEGLVHRSEIS--WKDIPVPPNTYKVGDKVTVKV 256

Query: 728 LVLDNESSNLLLSAKY----SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           L +D     + LS K       I   Q+ P+        +   G V ++ + G FVR   
Sbjct: 257 LGVDRSKERISLSIKQLRPDPWIGLKQRYPA-------GTKTTGTVVSLTDFGAFVRIEE 309

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            + G    S+   G      +   VGQ V   +LDVN +  R++LS+K+           
Sbjct: 310 DVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKR----------- 358

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
                       +Q       E K+ E    GS++ G+V +  DFG  V  E+  +    
Sbjct: 359 ------------VQPDPWEKIEEKYPE----GSIVHGRVTKLADFGAFVHLEDGVEALLH 402

Query: 904 ITHHQL-----AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
           I+             V  G  I A ++    ++R + LSLK +  D +
Sbjct: 403 ISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDPW 450



 Score = 43.9 bits (102), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G V ++T  G F+ +   ++  V +S LS GY E P +   +G+ V   VL V    +RV
Sbjct: 293  GTVVSLTDFGAFVRIEEDVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRV 352

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             +++K        + E         G IV G++ ++  +G F+ +E+
Sbjct: 353  SLSMKRVQPDPWEKIE----EKYPEGSIVHGRVTKLADFGAFVHLED 395



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 172/422 (40%), Gaps = 47/422 (11%)

Query: 180 DNLLPTIFHV-GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 238
           ++L P I  + G+ V  I+L+LD  ++ +          L    K      +Q G V+  
Sbjct: 149 EDLTPNIEELRGKEVPFIILELDRRERNLVVSHREYLKELERQKKEELFSKLQPGQVIEG 208

Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-----VVRSIDRTRKV 293
            +KSI D G  +  G   F G + R+ ++    I V P     G      V  +DR+++ 
Sbjct: 209 TIKSIVDFGLFVDIG--GFEGLVHRSEISWKD-IPVPPNTYKVGDKVTVKVLGVDRSKER 265

Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFLTYFTGTVDIF 352
           + LS       K +  D   I +    P G   +  V S+ + G  +       G V I 
Sbjct: 266 ISLS------IKQLRPD-PWIGLKQRYPAGTKTTGTVVSLTDFGAFVRIEEDVEGLVHIS 318

Query: 353 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPS--- 403
            L   +P  + +      ++V   +L V+   R V L++     +P+  +  + P     
Sbjct: 319 ELSWGYP-EHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKIEEKYPEGSIV 377

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
           H +V  + D    V ++ G+  LL              IS+++ ++V K      EG  +
Sbjct: 378 HGRVTKLADFGAFVHLEDGVEALLH-------------ISEMSWDKVNKPSDVVTEGQEI 424

Query: 464 RVRIL---GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 520
             +++     +    L+   L+   +   + ++S    G +V+G +  +  FGA ++   
Sbjct: 425 TAKVIKSDASKRKIRLSLKELQEDPWHKFLESYS---VGSIVEGPITELKDFGAFMKITD 481

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSS 579
            V+ L  +  +++  I  P    +VG  +  R++G+ + KR      + L K +  + SS
Sbjct: 482 DVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNLHKQEHLVTSS 541

Query: 580 YA 581
            A
Sbjct: 542 DA 543


>gi|404475817|ref|YP_006707248.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
 gi|404437306|gb|AFR70500.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
          Length = 556

 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 554 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 613 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           + +D +   + LS K++  +  +    D ++ H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAYPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 109/541 (20%), Positives = 203/541 (37%), Gaps = 80/541 (14%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31   VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 705
            +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78   QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 706  -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 762
               ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136  FSQIDISRGIKETDYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195  DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255  KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 883  HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
                 FG  V+  E      H     + +H       V+ G+ ++  ILD+   ER + L
Sbjct: 288  TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTL 347

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
             LK V               K      A +D  V  +V   V+ + +++ V  LP     
Sbjct: 348  GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNGLEG 392

Query: 997  IGYASVSDYNTQKFPQKQFL-NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
            I   S  D+       K ++   + V   +M++       R+ L  K   E+      +A
Sbjct: 393  ICDISDFDWMNNTVNIKDYIKENEEVEMVIMSIDRDKQ--RIKLSYKHTKESPWRVFDKA 450

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
                 Y  GS+V   +  I    + +       G +HI++++  K   +E++    K+G+
Sbjct: 451  -----YPHGSIVNGTVKAIIDSGVIVSLENDLEGYMHISQIDLPKGETLESV---LKVGE 502

Query: 1116 T 1116
            +
Sbjct: 503  S 503



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV 299


>gi|308499240|ref|XP_003111806.1| CRE-LET-716 protein [Caenorhabditis remanei]
 gi|308239715|gb|EFO83667.1| CRE-LET-716 protein [Caenorhabditis remanei]
          Length = 1758

 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 128/525 (24%), Positives = 219/525 (41%), Gaps = 63/525 (12%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKK------NKKKKKKTERKANETVDDL 107
           FPRGGG    +  ++       ++F + ++GL +K      N+ KK K +      V++ 
Sbjct: 13  FPRGGGSDKPKPSKNST-----SDFHSAKQGLKRKSAAPEQNEAKKVKEDSSWFPKVEE- 66

Query: 108 GSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADAL 167
            + F DG++G                     GVVAEV E  +V+   G       A++  
Sbjct: 67  -NCFIDGLTG--------------------LGVVAEVFEDGVVLHTAGTHTVKIHASEVS 105

Query: 168 DPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLS 226
                 E+   E   +   F VGQ++   V+     KK IG K K   S   S L K LS
Sbjct: 106 KKF--TELFNAEKIEMKDAFQVGQMIPFRVIT----KKTIGDKGKAKASCNPSKLNKHLS 159

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
              +  G+V+   V SIE+ G IL  GL   TGF+ ++     SG+  K GL L  VVR 
Sbjct: 160 PNMLVAGLVINTSVISIEEKGAILDVGLDQMTGFIEKSQFPA-SGL--KEGLPL--VVRI 214

Query: 287 IDRTRKVVYLSS--DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLT 343
           +  T +V+ ++S  + D ++    + L+   ++ L+PG ++        +  GV++    
Sbjct: 215 LSTTSRVIKVTSFVEQDNLNMATCEKLQ---LNHLMPGTILECEPTGDAVTAGVIVHIGN 271

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHN 398
              G +     +   P    +N     K + A ++F    S+ + L  +P +     +  
Sbjct: 272 GLKGILP----RRNLPPRLRENPEKLGKAIRAVVMFCQQNSKILVLNAHPDIVAVSRIEK 327

Query: 399 RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE-EEVRKLEKKY 457
           R     + +GD    + +  +     +   +P T         +S     E+   +  +Y
Sbjct: 328 RTSFEGISIGDKVKCTVIDAIPTKSIVYFTLPPTDGKKSLVTAVSSRGLLEKPDAVASEY 387

Query: 458 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
           + G+    R++GFR+ +   T   +       + T+ D K G ++ G+V  V   G    
Sbjct: 388 EVGTEKLCRVIGFRYADRTITVSTRKDILNQKITTYQDAKCGDILDGRVHHVTKSGVYFM 447

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVKSKR 560
               VKA  PL  +S+  +  P  K  FKVG E+  RV  +  +R
Sbjct: 448 VCNFVKAFAPLSLLSDKPLTVPKIKSMFKVGTEMKCRVWQICEQR 492



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 149/366 (40%), Gaps = 73/366 (19%)

Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSF-LTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
           K +S ++LV G++++T V SI E G +L   L   TG ++    ++ FP +  K      
Sbjct: 156 KHLSPNMLVAGLVINTSVISIEEKGAILDVGLDQMTGFIE----KSQFPASGLKEGL--- 208

Query: 371 KKVNARILFVDPTSRAVGLT-------LN----PYLLHNRAPPSHV----KVGDIYDQSK 415
             +  RIL    TSR + +T       LN      L  N   P  +      GD      
Sbjct: 209 -PLVVRIL--STTSRVIKVTSFVEQDNLNMATCEKLQLNHLMPGTILECEPTGDAVTAGV 265

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR---- 471
           +V +  GL  +L   + P                 R  E   K G  +R  ++  +    
Sbjct: 266 IVHIGNGLKGILPRRNLPP----------------RLRENPEKLGKAIRAVVMFCQQNSK 309

Query: 472 ------HLEGLATG-ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF---PGG 521
                 H + +A   I K ++FEG+         G  VK  VI      +IV F   P  
Sbjct: 310 ILVLNAHPDIVAVSRIEKRTSFEGISI-------GDKVKCTVIDAIPTKSIVYFTLPPTD 362

Query: 522 VKALCPLPHMSEFEIVKP---GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAI 576
            K        S   + KP     +++VG E + RV+G +   + ITV+ +K ++  K+  
Sbjct: 363 GKKSLVTAVSSRGLLEKPDAVASEYEVGTEKLCRVIGFRYADRTITVSTRKDILNQKI-- 420

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQ 634
            ++Y +A    I  G +  + K G +    N V+ FAP S L   P   P   SM+ VG 
Sbjct: 421 -TTYQDAKCGDILDGRVHHVTKSGVYFMVCNFVKAFAPLSLLSDKPLTVPKIKSMFKVGT 479

Query: 635 VVKCRI 640
            +KCR+
Sbjct: 480 EMKCRV 485



 Score = 40.4 bits (93), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 164/388 (42%), Gaps = 53/388 (13%)

Query: 934  VDLSLKTVFIDRFREANSNRQAQKKKRKREAS----KDLGVHQTV----NAIVEIVKENY 985
            VD   +T  I +    NS ++ + +    E      K+ GV++        + E  K N 
Sbjct: 962  VDDVARTTLIKKEFIGNSKKEKKTEDGSEEGKVRSIKNFGVYEGTVIGHAKLEENRKRNS 1021

Query: 986  LVLSLPEYNHSIGYASVSDY-----NTQKFPQKQFLN---GQSVIATVMALPSSSTAGRL 1037
            L + +     ++G   VS++     N++  P ++FL     + VI  ++    S+   ++
Sbjct: 1022 LFVDIRLPGDNVGRLHVSEFPPNLLNSEN-PLEEFLTRNVNKKVIVRIIGFIKSAKGPKI 1080

Query: 1038 LLLLKAISETETSSSKRA--KKKSSYDVGSLVQ----AEITEIKPLELRLK-FGIGFHGR 1090
              L    S+ +    + A    KS+Y VG +++    A +TE + L++ +    IG   R
Sbjct: 1081 AELTMIPSKIQAGKVRAATLSYKSNYSVGDMIKCFGTATLTEKQQLKVEVNPVWIGSISR 1140

Query: 1091 IHITEVNDDKSNVVENLFSNF--KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
             ++TE  D K    +    +F  K G+   A++IA       +KS    L+     L  S
Sbjct: 1141 ENVTE--DLKITAADGGIVDFSLKKGEMRQAKVIAVD-----RKSMSMTLT-----LDTS 1188

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF--ILDSAYEPSELQEF 1206
            E+ S+         IG  VTG V+ V   +  L +S   +A L    +   YE  E +  
Sbjct: 1189 EVDSEF-------KIGSTVTGRVFFVSKTYIRLKLSTGQQAVLTPTAITDKYESVE-EVV 1240

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRP-FQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
            +++  +G+ V      I  + K   +VL+  +    +++   +  DN    I EG    G
Sbjct: 1241 EKQMAVGQLVDVVCAKIQDKPKRHYVVLKSRYNSKTTNEKRKLILDN--KLIKEGSQFDG 1298

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTE 1293
             +    +  G L ++IGP + GR+   E
Sbjct: 1299 IVEN--ASKGSLFIEIGPGISGRIPVNE 1324


>gi|170289126|ref|YP_001739364.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
 gi|170176629|gb|ACB09681.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
          Length = 543

 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 116/521 (22%), Positives = 218/521 (41%), Gaps = 59/521 (11%)

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
           +YK G  + ++IL   + E       +    + L     D +    VK +V++    G  
Sbjct: 60  EYKVGENLTLQILNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKARVVSQTKGGYN 119

Query: 516 VQFPGGVKALCPLPH--MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSK 573
           V   G V A  P  H  +   + + P K+ +V   ++  ++  K     V  ++ L   K
Sbjct: 120 VLLKGVVSAFLPGSHSLLRRNDPI-PEKEIEV---IILEMVQTKRGPRIVVSRRALQDKK 175

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
           +    S  +  D  I  G +  I   G  V    GV+GF PRSEL  D    P  +   G
Sbjct: 176 IEEFFSEKKVGD--IVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPEDIVKPG 233

Query: 634 QVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 690
           Q +  +I+      + + LS    M  P    E+    +G +V+G  +V++ +    +V 
Sbjct: 234 QNITAKIIELDKEKKNVILSLKRLMPDPWEKVEEKY-PVGKVVNG--EVISIHPFGFFVR 290

Query: 691 AKGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
            +   +G +P   +        LE       ++K      +++ +D E+  L LS K + 
Sbjct: 291 LEPGVEGLVPRSEVFWGNTRKSLEEVVSAGDLVKV-----EVINVDKENRKLTLSYKKAK 345

Query: 746 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            +  + +       + N+VV G V  II+ G FV     + GF P S+    +  +  + 
Sbjct: 346 GDPWENI---EDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEI 402

Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
             +G+ V+  IL ++ E  +ITLS+K++  +  + +  +           L++       
Sbjct: 403 LKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKE-----------LETD------ 445

Query: 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 925
                     S++ G + +  + GVVV  EE+ D+ GF+ ++ L     E+G V+   +L
Sbjct: 446 ----------SIVSGTIKKIVNSGVVVEVEEY-DLEGFVPNNHLLSEP-ETGKVLNLVVL 493

Query: 926 DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 966
            +   E    L  + +  ++  E   N +  KK  ++E+S+
Sbjct: 494 RIDPDEV---LGGRMILSEKRYEERKNIEEYKKMVEKESSQ 531



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 211/519 (40%), Gaps = 71/519 (13%)

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRS 286
           E  + G ++   V   ED G ++ FG  S  GF+P N L ++     V   L LQ  + +
Sbjct: 17  EEFRRGQIVKGVVIGKEDDGVVVDFGGKS-EGFVPVNELIKSLDEYKVGENLTLQ--ILN 73

Query: 287 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV--QSILENGVMLSFLTY 344
           ++   + + LS     + K + +  K       V   +VS      ++L  GV+ +FL  
Sbjct: 74  LNYEERSI-LSERRPVLRKTLEELRKDYEEKKPVKARVVSQTKGGYNVLLKGVVSAFLP- 131

Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-- 402
             G+  +    +  P           K++   IL +  T R   + ++   L ++     
Sbjct: 132 --GSHSLLRRNDPIP----------EKEIEVIILEMVQTKRGPRIVVSRRALQDKKIEEF 179

Query: 403 -SHVKVGDIYD------QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
            S  KVGDI +       +  V V+   G+   IP + +S    ++  D+          
Sbjct: 180 FSEKKVGDIVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPEDIV--------- 230

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
             K G  +  +I+     +      LK    +           G VV G+VI++  FG  
Sbjct: 231 --KPGQNITAKIIELDKEKKNVILSLKRLMPDPWEKVEEKYPVGKVVNGEVISIHPFGFF 288

Query: 516 VQFPGGVKALCPLPHM-------SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
           V+   GV+ L P   +       S  E+V  G   KV       V+ V  +++++T+++K
Sbjct: 289 VRLEPGVEGLVPRSEVFWGNTRKSLEEVVSAGDLVKV------EVINVDKENRKLTLSYK 342

Query: 567 KTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
           K       A    +    DR     +  G +T I K G FV    GV+GF P SE+    
Sbjct: 343 K-------AKGDPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKR 395

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVV 680
             EP  +  +G+ VK +I+     +R+I LS         E  L +L   S+VSG +  +
Sbjct: 396 IDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKELETDSIVSGTIKKI 455

Query: 681 TPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVI 718
             + VVV V  + Y  +G +P  HL    E   V+  V+
Sbjct: 456 VNSGVVVEV--EEYDLEGFVPNNHLLSEPETGKVLNLVV 492



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 1367 GKHLEKIED-LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1425
            G   E IED  + N +V G V  +  +G F+ L   ++  V +S +S   ++ P +   I
Sbjct: 346  GDPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKI 405

Query: 1426 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1485
            G+ V  ++L ++  ++++ +++K    RT        L  L    IV G IK++ + G+ 
Sbjct: 406  GEKVKVKILKIDKENRKITLSIK----RTQENPWERALKELETDSIVSGTIKKIVNSGVV 461

Query: 1486 ITIENTNL 1493
            + +E  +L
Sbjct: 462  VEVEEYDL 469


>gi|84999536|ref|XP_954489.1| rna-associated protein [Theileria annulata]
 gi|65305487|emb|CAI73812.1| rna-associated protein, putative [Theileria annulata]
          Length = 690

 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 203/516 (39%), Gaps = 67/516 (12%)

Query: 85  LHKKNKKKKKKTERKANETVDD--LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVA 142
           L +  K K  K  +   E + D   GS   D +  KLP      TL +I+ G  + G VA
Sbjct: 27  LSRFQKNKANKPSKIDEEDISDGIYGSKCTDDV--KLP------TLDSITPGTLVLGSVA 78

Query: 143 EVNEKDLVICLPGGLRGLARAADALDP----ILDNEIEANEDNLLPTIFHVGQLVSCIVL 198
            V    L I +   + G A+ +D  D       + ++  + DN L +   +G  V C VL
Sbjct: 79  LVCPSGLRIHILNNIVGFAKYSDLFDSADSDTNNGDLANDRDNRLSSPIKIGSTVICYVL 138

Query: 199 QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG-LPSF 257
           +       +    + LSL+ SL+ + L ++ +  G++L A V S EDHG  + F  +   
Sbjct: 139 K-------VNYSYLSLSLKPSLINRDLRVDNIYPGLILPATVTSQEDHGLSITFNSVSGL 191

Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV------YLSSDPDTVSKCVTKDL 311
            GF+  +     S   VK  L     + S      V       ++      + K      
Sbjct: 192 NGFIMYDEQGRES---VKSILKSSYPINSTVNVAVVTVNAERGFVKCQWPWLYKTPIDTE 248

Query: 312 KGISIDLLVPGMMVSTRVQSI----LEN-------GVMLSFLTYFTGTVDIFHLQNTFPT 360
            G+  D L PG+++   V ++    LE        G  +  L     T+   H   +F  
Sbjct: 249 AGLVFDTLKPGLLLKAEVLNVHNIVLEGSSKSVFAGYTVKCLGSINETISSLH---SFAQ 305

Query: 361 TNWKNDYNQH-------KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV--KVGDIY 411
           TN  N+           + V  RI+ VD  ++ + +++   +L  + P       + +  
Sbjct: 306 TNISNEVEMEDFYSLVGETVECRIIQVDFENKKLHMSMQSQILKWKGPMGQAFKPINNKI 365

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTP--------AYVTISDVAE-----EEVRKLEKKYK 458
              K+ +      LL  IP T              Y  I DV +     EE      KY 
Sbjct: 366 INCKITQCFSSGFLLESIPPTGDDINNSDKRVLHCYCAIHDVLDDKSLTEETIFSSSKYS 425

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
            GS    R++ F +   L    +K+S       T  ++    VVKGK+I + + GAIVQ 
Sbjct: 426 VGSVHECRVIEFDYFTRLTRVSMKSSLISEEYVTPFELSASDVVKGKIINLVNSGAIVQI 485

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
              V    PL H+++  + K  +  KVG  L  RVL
Sbjct: 486 SSLVFGKVPLGHLTQVPVTKLPEGLKVGRNLRLRVL 521


>gi|358338086|dbj|GAA28562.2| rRNA biogenesis protein RRP5 [Clonorchis sinensis]
          Length = 2197

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 132/597 (22%), Positives = 245/597 (41%), Gaps = 107/597 (17%)

Query: 377 ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKV----VRVDRGLGLLLDIPST 432
           ++ VDP ++ +  +L P+LL    P S +         K     +R+D  +   +D  + 
Sbjct: 99  LILVDPGTKQLTGSLLPHLL----PSSFLHTSSCTTICKQLPIGMRLDNAVIERVDKRTI 154

Query: 433 PVSTPAYVTISDVAEEE-------VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 485
            +S P   T+  V           V  L+ K+  G  V  R++    LE +A   +K   
Sbjct: 155 HLSVPGSETLQAVVRRAQLPTKLAVENLKSKFAPGQKVTCRVIDHDLLEDVAIATMKKKL 214

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 545
            +    +  ++ PG ++   V      G +V+    +  L P  H+++  + +P +KF+ 
Sbjct: 215 LQLPFLSIEELFPGDLISAVVNRFTKTGVVVRAEDRLSGLIPYLHLADIPLKRPAEKFQR 274

Query: 546 GAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAE-------ATDRLITHGWITKI 596
           G ++  RVL +   + ++ +T K+ LV +  ++  S            D+ +   ++ KI
Sbjct: 275 GQKIDCRVLTLDKGTNKLILTAKRGLVDASCSLFGSKEMFDWVQRGVKDQTLFAAFVVKI 334

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            + G  +     ++ + PR E GL P     + Y  GQV++ RI+ ++  S +       
Sbjct: 335 SERGLLLSGLGELRAWLPRRETGLAPDDVLEATYFRGQVLRVRIVHALNDSSQDGGKETS 394

Query: 657 KPTRVSEDDLVKL-------------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT-- 701
           +P R     LV L              + +S V      NA V  V   G      PT  
Sbjct: 395 EPNRSRSKFLVSLKLKGKNEPSAKQRKTQLSSVYVGQVFNAKVRKVQNTGLHVDLFPTDN 454

Query: 702 -------------------EHLADHLEHATVMKSV---IKPGYEFD-------QLLVLDN 732
                              +HL+D   +  +       +KPG   D        ++V++ 
Sbjct: 455 ASKDPSMWSGSMGSGFLAFDHLSDFESNCALFAQFMTRLKPGAVLDLDRSGPRSVVVINK 514

Query: 733 ESSNLLLSAKYSLINSA---QQLPSDASH-----IHPNSVVH-----------GYVCNII 773
            SS +++SA+ SL+ +A   Q   SD  +     IH   V              +V N +
Sbjct: 515 ASSTVIVSARPSLLRAASNHQLAESDTENKNVIDIHTGFVSEFNDLRVGTQWFAWVVNHV 574

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDG---QRADLSKTYYVGQSVRSNILDV-NSETGRITLS 829
           + G FV+F   + G AP     D    +   L+  +  G +V + ++++ +SE  R  ++
Sbjct: 575 DYGIFVQFPSGIRGLAPVRLLTDTRIPKHVALTSLFPTGATVIAKVVELASSEKRRCLVT 634

Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW-------VEGFIIGSVIE 879
           L+       D  F++EH++    IA ++S ++  +EL+W       + GF IG +IE
Sbjct: 635 LRM-----LDTYFVEEHYV---DIA-IRSLENCITELEWLSRRQHLLSGFRIGDLIE 682


>gi|302786996|ref|XP_002975268.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
 gi|300156842|gb|EFJ23469.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
          Length = 366

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 76/110 (69%), Gaps = 10/110 (9%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 151  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 210

Query: 1442 RVEVTLKTSDSRTASQ----SE-----INNLSNLH-VGDIVIGQIKRVES 1481
             +E++L  + S+ +S     SE     I +LS L+ VG  V  +I +V++
Sbjct: 211  HIEMSLAATTSQDSSCLCHVSEVSYDFIQDLSTLYKVGQWVQVKILKVDA 260



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 46/171 (26%)

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+N E+K + L   P    
Sbjct: 57   LGMSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSVNHERKQVDLSRHP---- 112

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG------------------------G 1276
               KT D           +G ++G RI+++ +GVG                        G
Sbjct: 113  ---KTSDEQ-------FKKGGLLGRRITRVFAGVGRHTVQGRWESFGKVHGFVKNVTEKG 162

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FDPLSGYDE 1319
              V + P L  R+    L N  V +P   +  G+         +PLSG+ E
Sbjct: 163  CFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIE 213


>gi|302776692|ref|XP_002971496.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
 gi|300160628|gb|EFJ27245.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
          Length = 393

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 59/75 (78%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 208  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 267

Query: 1442 RVEVTLKTSDSRTAS 1456
             +E++L  + S+ +S
Sbjct: 268  HIEMSLTATTSQDSS 282



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 51/247 (20%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            +L  N  I +TV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 42   SLRGNVHITETVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFE-TVTIE 100

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
            Q    YV +V + WA L +S HLK  LFILD++ +PSEL+ F+     G     +     
Sbjct: 101  QSDIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFRALQSRGPVPVPYK---K 157

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ---- 1280
             E + + L L P       KT D      + F  +GD++  RI+++ +GVGG  VQ    
Sbjct: 158  CEPRKVDLSLHP-------KTSD------EQF-KKGDLLDRRITRVFAGVGGHTVQGRWE 203

Query: 1281 --------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FD 1312
                                + P L  R+    L N  V +P   +  G+         +
Sbjct: 204  SFGKVHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIE 263

Query: 1313 PLSGYDE 1319
            PLSG+ E
Sbjct: 264  PLSGHIE 270


>gi|302787034|ref|XP_002975287.1| hypothetical protein SELMODRAFT_415455 [Selaginella moellendorffii]
 gi|300156861|gb|EFJ23488.1| hypothetical protein SELMODRAFT_415455 [Selaginella moellendorffii]
          Length = 312

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 19/218 (8%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            N    + +GQTV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 51   NPLRKYSVGQTVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFE-TVTIE 109

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT---GHVL 1221
            Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F +     K+VT    H+ 
Sbjct: 110  QSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFLK--STSKSVTCSSCHIR 167

Query: 1222 SINKEKKLLRLVLRP-----FQDG--ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
            S+N E+K + L L P     F +G  +  + +D+           G  + G +  ++   
Sbjct: 168  SVNHERKQVDLSLHPKATSLFTEGQFVRCRVLDLKRPGRGEM---GLELSGFVKNVME-- 222

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1312
             G  V + P L  R+    L N  V +P   +  G+ D
Sbjct: 223  KGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVD 260



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 112/273 (41%), Gaps = 83/273 (30%)

Query: 1208 RRFHIGKAVTGHVLSINKEKK------LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
            R++ +G+ V   +LS  K  +       L L LRP +   +D    +     +T   E  
Sbjct: 54   RKYSVGQTVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVIT--FETVTIEQS 111

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHF-------TELKNICVSDPLS---------- 1304
            ++   + ++      LV  + PHL G +         +EL+    S   S          
Sbjct: 112  VIR-YVQEVKDNWAWLV--LSPHLKGCLFILDTSDDPSELERFLKSTSKSVTCSSCHIRS 168

Query: 1305 -GYDEGQFD------PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1357
              ++  Q D        S + EGQFV+C+VL++ R  RG   +ELS              
Sbjct: 169  VNHERKQVDLSLHPKATSLFTEGQFVRCRVLDLKRPGRGEMGLELS-------------- 214

Query: 1358 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1417
                                      G+VKNV  KGCF++LS  L+A++ L NLS+ +V+
Sbjct: 215  --------------------------GFVKNVMEKGCFVVLSPSLEARIQLKNLSNSFVQ 248

Query: 1418 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            +P + FP GK        V+  +KR+ + +K S
Sbjct: 249  NPAEMFPPGK--------VDAETKRISLGMKAS 273


>gi|225619757|ref|YP_002721014.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
 gi|225214576|gb|ACN83310.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
          Length = 554

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 17/360 (4%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+ +   G+    +++K   ++ GKV  ++ FGA ++   G      +P+MS  ++V P
Sbjct: 173 LLEETQNAGIETFLNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNP 232

Query: 540 GKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
                 G E +F+VL + K  R      K L +             D  I +G +T ++K
Sbjct: 233 KSVISKGEERMFKVLHIDKENRKVDLGLKQLDEDPWGKFVEQYHIGD--IINGEVTNVKK 290

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 656
            G FV+  +G++G    S+L  +     PS     G  ++C+I+    A R++ L     
Sbjct: 291 FGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQV 350

Query: 657 --KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
              P    E D   + S V   V  +  N   V+ +  G  +G        D   +   M
Sbjct: 351 KENPWDTVEKDF-PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNM 406

Query: 715 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNI 772
           K  +K G E + +++ +D +   + LS K++  +S  +L   A   HP  S+V G V  I
Sbjct: 407 KDYVKEGEEVNMVIMSIDRDKQRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKAI 462

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +++G  V     L G+   S+    + + L +   VG++    + +VN    RI+LS ++
Sbjct: 463 VDSGAIVSLEDDLEGYMHVSQVEIPKGSTLEEVVKVGETYPFVVREVNQSKRRISLSRRE 522



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 114/567 (20%), Positives = 208/567 (36%), Gaps = 87/567 (15%)

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITK-----IEKHGCFVRFYNGVQGFAPRSELGLD 621
            K L   ++    +  E+ +  ++ G I K      +    F+ F +  +G   RSE   +
Sbjct: 5    KNLSNDEIEFRKALEESDNTFLSRGKIVKGKVVQFDDTDVFIDFDSKSEGKIKRSEFDKE 64

Query: 622  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---DDLVKLGSLVSGVVD 678
            P         +G+ ++  I+S       + LS      R S+   D+ VK  + ++GVV 
Sbjct: 65   P--------TIGEEIEA-IVSGEDDKGYVILSKSEIDKRKSQELIDNAVKNNTAITGVVK 115

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
             V      V ++     +   P   +   L         I   YEF    V+     +++
Sbjct: 116  EVIKGGFKVSIMG---HQAFCPFSQI--DLARGIKEADYIGKEYEF---RVIKKNGRDVV 167

Query: 739  LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            +S +  L+   Q   + +  +++  N +++G V NI + G F+       GF        
Sbjct: 168  VSRRV-LLEETQNAGIETFLNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSW 226

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
             +  +       G+     +L ++ E  ++ L LKQ               L E+     
Sbjct: 227  DKVVNPKSVISKGEERMFKVLHIDKENRKVDLGLKQ---------------LDEDPWG-- 269

Query: 857  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLA 910
                      K+VE + IG +I G+V     FG  V   +      H     + +H    
Sbjct: 270  ----------KFVEQYHIGDIINGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNP 319

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
               V+ G+ ++  ILD+  AER + L LK V               K+       KD  V
Sbjct: 320  SDFVKKGAFLECKILDMNAAERKLTLGLKQV---------------KENPWDTVEKDFPV 364

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL-NGQSVIATVMALP 1029
               V   V+ + +N+ V  LP     I   S  D+       K ++  G+ V   +M++ 
Sbjct: 365  KSAVKCKVKRIIKNFAVFELPNGLEGICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSID 424

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
                  +L       S   T  S     + ++  GS+V   +  I      +       G
Sbjct: 425  RDKQRIKL-------SYKHTKDSPWRLFEKAHPQGSIVDGTVKAIVDSGAIVSLEDDLEG 477

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQT 1116
             +H+++V   K + +E +    K+G+T
Sbjct: 478  YMHVSQVEIPKGSTLEEV---VKVGET 501



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            + +L  N I+ G VKN+   G FI ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNPKSVISKGEERMFK 245

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            VL ++  +++V++ LK  D     +     +   H+GDI+ G++  V+ +G F+ +
Sbjct: 246  VLHIDKENRKVDLGLKQLDEDPWGKF----VEQYHIGDIINGEVTNVKKFGAFVKV 297



 Score = 47.0 bits (110), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 142/353 (40%), Gaps = 51/353 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 29  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPTIGEEIEAIVSGEDD 80

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           K   +  K  + K K   L   A   +  IT G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNTAIT-GVVKEVIKGGFKVSIM-GHQAFCPFSQI 138

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            L  G + +   ++G+  + R++      +  SRR+ L         +  + +K   +++
Sbjct: 139 DLARGIKEAD--YIGKEYEFRVIKKNGRDVVVSRRVLLEETQNAGIETFLNNLKENDIIN 196

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 733
           G V  +      +  I  G+  G +   +++   +     KSVI  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFIE-ITPGFD-GFLAIPNMS--WDKVVNPKSVISKGEERMFKVLHIDKE 252

Query: 734 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           +  + L  K        QL  D         H   +++G V N+ + G FV+    + G 
Sbjct: 253 NRKVDLGLK--------QLDEDPWGKFVEQYHIGDIINGEVTNVKKFGAFVKVADGIEGL 304

Query: 789 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 832
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQ 349


>gi|374339665|ref|YP_005096401.1| 30S ribosomal protein S1 [Marinitoga piezophila KA3]
 gi|372101199|gb|AEX85103.1| ribosomal protein S1 [Marinitoga piezophila KA3]
          Length = 519

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 171/388 (44%), Gaps = 31/388 (7%)

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
           +YK+G  ++V++L     EG A G  KA+  + ++    ++  G VVKGK+      G I
Sbjct: 62  EYKKGEKIKVKLLKINDAEGQAFGSEKAAKKDEII---DEIVEGKVVKGKIKERVEKGYI 118

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA 575
           V+    V+A  P        ++ P + F    E+ F V+  + +R     +  +V S+  
Sbjct: 119 VELENVVRAFLP----GSLAMLNPNEPFP-REEMDFLVIKREERR----RRLNIVVSRKG 169

Query: 576 ILSSYAEA---TDRL--ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
           ++  Y E    T  L  +  G +T I++ G F+     +    P+SE+  D   + + MY
Sbjct: 170 LVDKYIEEFFNTHNLNTLVEGVVTGIKEFGLFISLNPYITALVPKSEISWDKKVDINEMY 229

Query: 631 HVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 687
            +G  VK  I+     +R+I++S       P    E D   + S+V G V  + P     
Sbjct: 230 KIGDKVKGIIIKLDKENRKISVSVKRLKDDPWETVEKDY-PVDSIVEGEVIEIFP----- 283

Query: 688 YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 745
           +  A    +G     H ++        ++ V+  G +   ++L +D +   + LS K  L
Sbjct: 284 FGFAVKLGEGIEGLVHESEIFWSGKRKIEDVVSVGDKVKVKVLSIDKDKKKITLSYKQVL 343

Query: 746 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            +  + +      +H   +V G V  I+  G  ++    LTGF+  S+       ++   
Sbjct: 344 GDPWKDID---EKLHEGDIVDGVVEKILPNGLIIKLDNELTGFSHVSELSWNFVDNVEDL 400

Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQS 833
           +  G  V+  +L V+ E  +I LS+KQ+
Sbjct: 401 FKEGDKVKVKVLHVDKENRKIKLSVKQA 428



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 113/283 (39%), Gaps = 51/283 (18%)

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            N++V G V  I E G F+     +T   P+S+    ++ D+++ Y +G  V+  I+ ++ 
Sbjct: 185  NTLVEGVVTGIKEFGLFISLNPYITALVPKSEISWDKKVDINEMYKIGDKVKGIIIKLDK 244

Query: 822  ETGRITLS---LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII--GS 876
            E  +I++S   LK     + +  +  +  +  E I +               GF +  G 
Sbjct: 245  ENRKISVSVKRLKDDPWETVEKDYPVDSIVEGEVIEIFPF------------GFAVKLGE 292

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
             IEG VHES  F                +  +     V  G  ++  +L + K ++ + L
Sbjct: 293  GIEGLVHESEIFW---------------SGKRKIEDVVSVGDKVKVKVLSIDKDKKKITL 337

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
            S K V  D +++ +                 L     V+ +VE +  N L++ L   N  
Sbjct: 338  SYKQVLGDPWKDIDEK---------------LHEGDIVDGVVEKILPNGLIIKLD--NEL 380

Query: 997  IGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
             G++ VS+  +N     +  F  G  V   V+ +   +   +L
Sbjct: 381  TGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHVDKENRKIKL 423



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 24/157 (15%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G  V   VLSI+K+KK + L    ++  + D   DI        +HEGDIV G + KIL
Sbjct: 317  VGDKVKVKVLSIDKDKKKITL---SYKQVLGDPWKDIDEK-----LHEGDIVDGVVEKIL 368

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
                GL++++   L G  H +EL    V +          + L  + EG  VK KVL + 
Sbjct: 369  P--NGLIIKLDNELTGFSHVSELSWNFVDN---------VEDL--FKEGDKVKVKVLHVD 415

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1368
            +  R    ++LS++ + +      S++L    +  GK
Sbjct: 416  KENR---KIKLSVKQAKENPWKKVSNELKNGDEISGK 449


>gi|91082491|ref|XP_972709.1| PREDICTED: similar to programmed cell death protein 11 (pre-rrna
           processing protein rrp5) [Tribolium castaneum]
          Length = 953

 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 205/496 (41%), Gaps = 60/496 (12%)

Query: 260 FLPRNNLAENSGIDVKPGLLLQGVVRSIDR----------TRKVVYLSSDPDTVSKCVTK 309
           +  +  L +  G  V+ G+++   +R              T   V +++  D  +  +TK
Sbjct: 22  YQEKKKLLKTCGKRVQDGMVVLACIRRFSNLSVQVEFPGLTYGAVAINNISDVFTASITK 81

Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YN 368
           +LK  + DL++P             +G+           VD      TF  +  K +   
Sbjct: 82  ELKANN-DLILP-------------HGIKGQLAENCYAYVD-----ETFTFSRIKKERIK 122

Query: 369 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
           + K + A +LFV+P ++   L+L       + P   + +G +     +  V +GL L L+
Sbjct: 123 EGKSIPAYVLFVEPVTKVTYLSLRGL---EKLPEPELTIGQVCSAQILYNVPKGLYLQLN 179

Query: 429 IPSTPVSTPAYV--TISDVAEEE-VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 485
              T   +   +  T+   A+ + V  + KKY  GS  + R+L + H++ L     +   
Sbjct: 180 QTETGFISNKRLLKTLPKGADVDIVSAIRKKYPNGSRHQCRVLDYNHMQQLYICTFEKQV 239

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFK 544
            +  +FT SD+K G  V  +V  V + G I +  G V+   P   +S  +  +  K KF 
Sbjct: 240 IKEKIFTVSDLKIGQAVTAQVTKVVTNGLITKV-GHVQGFVPNLQLSNAKFTQNIKAKFT 298

Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCF 602
           VG  +  RVL +    + +T K+ LV+S   LA L      +  +   G++ +++  G  
Sbjct: 299 VGMTVNARVLNITDGNVILTLKQGLVESDKCLATLEQLIPCSQYV---GFVVQVKVAGAL 355

Query: 603 VRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           V FY  ++G+     L         +P   + +GQVV   ++      +   L   +   
Sbjct: 356 VAFYGDIKGWISNRVLNHASSGHYLDPREYFFIGQVVTVWVL----GIKNDKLHLSLNAP 411

Query: 660 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
           +      +K+G   +G V  +  + + V  ++    K TIP  HL+ +L    V+ +  K
Sbjct: 412 KGQNKHKIKIGQTDNGSVTKIHSDGLDVK-LSNYEVKATIPLAHLSTNLSLCPVLLTNAK 470

Query: 720 PG---------YEFDQ 726
            G         Y FD+
Sbjct: 471 IGSVVEGVVLDYNFDE 486


>gi|449018016|dbj|BAM81418.1| similar to rRNA biogenesis protein; rrp5 homolog; multiple S1 rna
           binding domain protein [Cyanidioschyzon merolae strain
           10D]
          Length = 2038

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 173/386 (44%), Gaps = 39/386 (10%)

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           G++    + S +  R+   L +DP  V++  T+     +++ L PGM+V  +V S  E  
Sbjct: 250 GMVCWASLASWNEQRRTGILQNDPKMVAEAFTRG--HWTLEQLSPGMLVEAQVLSRDERF 307

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK---VNARILFVDPTSRAVGLTLNP 393
            ++ FL  F G ++ FHL        W+ D+ + +    +  R++++D   R + +T   
Sbjct: 308 AIVRFLQVFEGILEWFHLD------QWE-DFARLEPDAILRVRLIYIDCRRRRIMVTART 360

Query: 394 YLLHNRAPPSHVKVGDIYDQS------KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
            L++    P  V     Y +       +V +++ G G+ L      +    +     +++
Sbjct: 361 SLVNTLTLPLLVSAARRYHRGSFVESLRVFKIENGRGIWLRKDKEAIYF--FADRKMLSD 418

Query: 448 EEVRKLEKKYKEGSCV-RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           E   ++E+ +  G+ V R R++    +EG+    LK S  E      S+++PG +V+ +V
Sbjct: 419 ERFSRMERLFPLGTVVPRARVVSHMAMEGIVRVSLKPSLLERKFMDVSELEPGALVRCRV 478

Query: 507 IAVDSFGAIVQFPG-------GVKALCPLPHMSEFEIV--KPGKKFKVGAELVFRVLGV- 556
           +   S       P         +    PL  +++  +   +  KKF  G++L  RV  V 
Sbjct: 479 LGWISVTPATATPSLRVSIEDCLSGEIPLELLTDVPVQWRRLEKKFPPGSQLRCRVWLVY 538

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF-VRFYNGVQGFAP 614
            K K++ +T +++LV S L IL+ +       +  G +   +  G + V FY    G  P
Sbjct: 539 PKRKQVLLTARRSLVDSDLPILAGWDTMQQGQVYAGILGPRDPSGAYRVLFYQRFTGILP 598

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRI 640
            + LG +      + +  GQV++ R+
Sbjct: 599 -ANLGTE-----MASFKSGQVIRVRV 618



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 7/115 (6%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V  +V++V   G F+ L+  L A+ LL +L++G+V  P + +P+G  V   +       
Sbjct: 1394 VVGAFVRHVDQAGVFLNLAPGLVARCLLRDLAEGFVPDPVQVYPVGMHVQAMITDCGGSD 1453

Query: 1441 KR-VEVTLKTSDSRTASQSEINNL------SNLHVGDIVIGQIKRVESYGLFITI 1488
             R V V+L+ +  +   Q +          S +H+G + +G+++RV  +G+F+ +
Sbjct: 1454 ARHVRVSLRAAQQQQQQQQQRAVAAEQAPTSAVHIGGVYLGRVRRVVPFGIFVEL 1508


>gi|397620972|gb|EJK66030.1| hypothetical protein THAOC_13070 [Thalassiosira oceanica]
          Length = 2366

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 19/153 (12%)

Query: 1342 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1401
            LS R  LDG       DL  D   PG          PN +V GYV   + KGCF+ LSR 
Sbjct: 1724 LSGRERLDG-------DLEDDP-VPG----------PNDMVHGYVTCTSKKGCFVRLSRS 1765

Query: 1402 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV-EPLSKRVEVTLKTSDSRTASQSEI 1460
            LDA+V+L  LSD +V  P   FP G+LV G+V +V +    +  V +   +S   S  + 
Sbjct: 1766 LDARVILKELSDDFVPDPGAMFPPGRLVVGKVKTVRDSKGGKKLVDIDMRESVLLSGEDR 1825

Query: 1461 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
             ++ ++ V +   G + RVE+YG F+ I+N+++
Sbjct: 1826 ISIDDIEVNEKYTGVVTRVETYGAFVKIDNSDV 1858



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 14/118 (11%)

Query: 542  KFKVGAELVFRVL--GVKSKRITVTHKKTLVKS--KLAILSSYAEATDRLITHGWITKIE 597
            K++VG  +  R L   V+ +   +T KKTL+      +++S Y EA    I  G+I+K++
Sbjct: 981  KYRVGQGVDVRCLTVDVRGRTAVLTAKKTLIAEGEDGSVISDYGEAEPGKIAAGFISKVD 1040

Query: 598  KHGCFVRFYNGVQGFAPR----SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
              G  V FYN V G        SELG++   +P + Y VG VV  R+   +   RR N
Sbjct: 1041 GTGLTVTFYNNVHGRVSSRCLASELGVE---DPRTNYTVGDVVAARV---VQCDRRRN 1092



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 17/129 (13%)

Query: 319 LVPGMMVSTRVQSILENGVMLSF-LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA-- 375
           L PGM+    V++  +NG+ +SF    + G +D  HL         K    + ++     
Sbjct: 689 LQPGMLTEVSVEAYAKNGLCVSFHRGVYRGAIDEDHLGGHRGCEEGKGGRERRRRTRTRA 748

Query: 376 ------------RILFVDPTSRAVGLTLNPYLLHNRAPPSH--VKVGDIYDQSKVVRVDR 421
                       RI+ VD  ++ V  ++ P++L  R   +   + VG I + ++V+R+D 
Sbjct: 749 CGGRACSADGIPRIVAVDTATKVVRFSIQPHILALRGEFAAFPLPVGTIVEGARVIRIDA 808

Query: 422 GLGLLLDIP 430
           G+G LL +P
Sbjct: 809 GIGALLALP 817


>gi|303245616|ref|ZP_07331899.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
 gi|302492879|gb|EFL52744.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
          Length = 576

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 154/351 (43%), Gaps = 34/351 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VV G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL 
Sbjct: 205 LEEGQVVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G  
Sbjct: 264 FDQEKQKVSLGMKQLVSDPWENIAGKYPEGT-RLA--GKVTNLVDYGAFVELEAGVEGLV 320

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK---- 668
             SE+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V     
Sbjct: 321 HISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKKRISLG--MKQVRPNPWDIVAEKYP 378

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ G V  +T   + +     G   G     H++D     +  K V  PG  F    
Sbjct: 379 EGTILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKTGD 429

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV 
Sbjct: 430 IVMAKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGTMVKGTVTNITDFGLFVE 485

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 486 VEEGIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 150/392 (38%), Gaps = 79/392 (20%)

Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
           +  D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++
Sbjct: 118 QEKDDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVL 173

Query: 642 ------SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV----- 687
                 S++  SRR+ L       R    DL+K    G +V+G V  +T   V V     
Sbjct: 174 KINRRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQVVTGRVKNITEYGVFVDLGGL 230

Query: 688 ----YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
               ++    + +   P E  HL D LE                ++L  D E   + L  
Sbjct: 231 DGLMHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQEKQKVSLGM 275

Query: 742 KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-A 800
           K  + +  + +   A      + + G V N+++ G FV     + G    S+    ++  
Sbjct: 276 KQLVSDPWENI---AGKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLR 332

Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
             S+  +VG  V   +L V+ E  RI+L +KQ   +  D                     
Sbjct: 333 HPSQMVHVGDEVEVVVLSVDPEKKRISLGMKQVRPNPWDIV------------------- 373

Query: 861 HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATV 914
                    E +  G+++EG V    +FG+ +  E+      H     +    +  G   
Sbjct: 374 --------AEKYPEGTILEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMF 425

Query: 915 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
           ++G ++ A +L V K      L +K +  D +
Sbjct: 426 KTGDIVMAKVLTVDKENEKFTLGIKQLSEDPW 457



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 168/384 (43%), Gaps = 35/384 (9%)

Query: 189 VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG V+T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQVVTGRVKNITEYG 222

Query: 248 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 303
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQEKQKVSLG-----M 275

Query: 304 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
            + V+   + I+      G  ++ +V ++++ G  +       G V I  +  T    + 
Sbjct: 276 KQLVSDPWENIA-GKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHP 334

Query: 364 KNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIYDQSKVV 417
               +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + + ++  
Sbjct: 335 SQMVHVGDEVEVVVLSVDPEKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVKNITE-- 392

Query: 418 RVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEG 475
                 G+ + I          + +SD++  ++VR   + +K G  V  ++L   +  E 
Sbjct: 393 -----FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKTGDIVMAKVLTVDKENEK 444

Query: 476 LATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
              GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +  +S  
Sbjct: 445 FTLGIKQLS--EDPWTRVPDTYPVGTMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRK 502

Query: 535 EIVKPGKKFKVGAELVFRVLGVKS 558
           ++  P + +K G E+  +V+ V +
Sbjct: 503 KVKTPAELYKEGDEIEAKVIHVSA 526


>gi|46581552|ref|YP_012360.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601286|ref|YP_965686.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris DP4]
 gi|387154752|ref|YP_005703688.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
 gi|46450974|gb|AAS97620.1| ribosomal protein S1 [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561515|gb|ABM27259.1| SSU ribosomal protein S1P [Desulfovibrio vulgaris DP4]
 gi|311235196|gb|ADP88050.1| ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
          Length = 577

 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 34/352 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VVKGK   +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL 
Sbjct: 205 LEEGQVVKGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKELVSLGQELELKVLS 263

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               S+++++  K+ +      I + + E    L   G +T +  +G FV    GV+G  
Sbjct: 264 FDRDSQKVSLGMKQLVADPWQDITAKFPEG---LRGQGKVTNLVDYGAFVELEPGVEGLV 320

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--- 669
             SE+        PS M  VG  V+  I+   P  +RI+L   MK  + +  ++V     
Sbjct: 321 HISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLG--MKQVKPNPWEVVAEKYP 378

Query: 670 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ GV+  +T   + +     G   G     H++D     +  K +  P   +    
Sbjct: 379 EGTILEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKIRHPNEMYKVGD 429

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D E+    L  K    +   ++P+     +P  ++V G V NI + G FV 
Sbjct: 430 VVQAKVLTVDQENEKFTLGVKQLAEDPWSRVPA----TYPVGTLVTGSVTNITDFGLFVE 485

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               + G    S+    +    S+ Y  GQ +++ ++ V++E  R+ LS+KQ
Sbjct: 486 VEEGIEGLVHVSEISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIKQ 537



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            I++G +KN+T  G FI +   +D  + +S++S    +  P + + +G +V  +VL+V+  
Sbjct: 382  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEMYKVGDVVQAKVLTVDQE 441

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +++  + +K       S+      +   VG +V G +  +  +GLF+ +E
Sbjct: 442  NEKFTLGVKQLAEDPWSRVP----ATYPVGTLVTGSVTNITDFGLFVEVE 487


>gi|302822837|ref|XP_002993074.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
 gi|300139074|gb|EFJ05822.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
          Length = 417

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 52/177 (29%)

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
            + EGQFV+C+VL++ R  RG   +ELS                                 
Sbjct: 139  FTEGQFVRCRVLDLKRPGRGKMGLELS--------------------------------- 165

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
                   G+VKN   K         L+A++ L NLS+ +V++P + FP GK+++GR+LS+
Sbjct: 166  -------GFVKNGRRK-------VSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSI 211

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            EPLS  +E++L  + S+ +S            G+IV G+I  +E++ +FI++  +++
Sbjct: 212  EPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFRIFISLAESDV 263



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F
Sbjct: 81   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERF 126


>gi|406886795|gb|EKD33753.1| hypothetical protein ACD_75C02606G0004 [uncultured bacterium]
          Length = 576

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 169/392 (43%), Gaps = 40/392 (10%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            S ++ G ++KG +  +  +G  +   GG+  LC +  +S   +  P K +KVG EL  +
Sbjct: 196 RSKLEEGQIIKGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHPAKLYKVGEELEVK 254

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           VL     +    H +  +  K      +A   +R      T G +  I  +G FV    G
Sbjct: 255 VL-----KYDREHDRVSLGVKQLRDDPWATVVNRYPVGQTTKGKVVSITDYGVFVELEEG 309

Query: 609 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           V+G    SE+        PS M  VG  V+  +++    ++RI+L   MK  + +  DLV
Sbjct: 310 VEGLIHVSEMTWSKKPRHPSKMVSVGDEVEVMVLNIETETKRISLG--MKQLQPNPWDLV 367

Query: 668 K----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
                +GS++ G +  +T   V +     G  +G     H++D     +  + +  P  +
Sbjct: 368 TENYPVGSVIEGKIKNITDFGVFI-----GIEEGIDGLIHVSD----LSWTERIKHPSEK 418

Query: 724 FDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIET 775
           + +       +L +D E+    L  K  + +  Q     A + +P+ +VV G + N+ + 
Sbjct: 419 YTKGETIQAVVLKIDKENERFSLGIKQLVPDPWQA----AYNNYPSGTVVEGEITNVTDF 474

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G FV+    + G    S+    +       Y VG ++++ +++V+++  +I LS+K    
Sbjct: 475 GVFVKLEEGIEGLVHVSELSKDKVKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVK--TL 532

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
              D     E F   EK+A   +    G  LK
Sbjct: 533 EGEDEGAAVEKFKKAEKLAAENAPSTFGDLLK 564



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/416 (18%), Positives = 172/416 (41%), Gaps = 73/416 (17%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            ++L  + + +N+++S +  L     +L  +  S +    ++ G + NI + G F+  +G 
Sbjct: 165  KILKFNKKRNNVVISRRAILEEERNKLREEMRSKLEEGQIIKGAITNITDYGLFID-MGG 223

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    +    G+ +  +K Y VG+ +   +L  + E  R++L +KQ            
Sbjct: 224  MDGLCHITDLSWGRVSHPAKLYKVGEELEVKVLKYDREHDRVSLGVKQ------------ 271

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
               L ++  A +            V  + +G   +GKV    D+GV V  EE   V G I
Sbjct: 272  ---LRDDPWATV------------VNRYPVGQTTKGKVVSITDYGVFVELEEG--VEGLI 314

Query: 905  THHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
               ++  +         V  G  ++  +L++    + + L +K +  + +     N    
Sbjct: 315  HVSEMTWSKKPRHPSKMVSVGDEVEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVG 374

Query: 957  -----KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
                 K K   +    +G+ + ++ ++ +                   + +S     K P
Sbjct: 375  SVIEGKIKNITDFGVFIGIEEGIDGLIHV-------------------SDLSWTERIKHP 415

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             +++  G+++ A V+ +   +   R  L +K +      ++      ++Y  G++V+ EI
Sbjct: 416  SEKYTKGETIQAVVLKIDKENE--RFSLGIKQLVPDPWQAAY-----NNYPSGTVVEGEI 468

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
            T +    + +K   G  G +H++E++ DK   V+     +++G T+ A +I  S K
Sbjct: 469  TNVTDFGVFVKLEEGIEGLVHVSELSKDK---VKTPVGMYQVGDTLKAIVINVSAK 521



 Score = 47.8 bits (112), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 142/337 (42%), Gaps = 72/337 (21%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            IG+++   +L  NK++  + +  R   +   +K      + M++ + EG I+ G I+ I 
Sbjct: 158  IGESMDFKILKFNKKRNNVVISRRAILEEERNKL----REEMRSKLEEGQIIKGAITNIT 213

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF-------------------- 1311
                GL + +G  + G  H T+L    VS P   Y  G+                     
Sbjct: 214  DY--GLFIDMG-GMDGLCHITDLSWGRVSHPAKLYKVGEELEVKVLKYDREHDRVSLGVK 270

Query: 1312 ----DPLSG----YDEGQFVKCKVL---------EISRTVRGTFHV-ELSL----RSSLD 1349
                DP +     Y  GQ  K KV+         E+   V G  HV E++     R    
Sbjct: 271  QLRDDPWATVVNRYPVGQTTKGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSK 330

Query: 1350 GMSSTNSSDLST-DVDTPGKHLE-KIEDLSPN------------MIVQGYVKNVTSKGCF 1395
             +S  +  ++   +++T  K +   ++ L PN             +++G +KN+T  G F
Sbjct: 331  MVSVGDEVEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVGSVIEGKIKNITDFGVF 390

Query: 1396 IMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDS 1452
            I +   +D  + +S+LS    ++ P +++  G+ +   VL ++  ++R  + +K    D 
Sbjct: 391  IGIEEGIDGLIHVSDLSWTERIKHPSEKYTKGETIQAVVLKIDKENERFSLGIKQLVPDP 450

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              A+       +N   G +V G+I  V  +G+F+ +E
Sbjct: 451  WQAA------YNNYPSGTVVEGEITNVTDFGVFVKLE 481



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 81/413 (19%), Positives = 165/413 (39%), Gaps = 67/413 (16%)

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            +AI E E +   R + +S  + G +++  IT I    L +  G G  G  HIT+++  + 
Sbjct: 181  RAILEEERNKL-REEMRSKLEEGQIIKGAITNITDYGLFIDMG-GMDGLCHITDLSWGRV 238

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
            +    L+   K+G+ +  +++    + D     + +L   P    V+             
Sbjct: 239  SHPAKLY---KVGEELEVKVLKYDREHDRVSLGVKQLRDDPWATVVNR-----------Y 284

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAV 1216
             +GQ   G V  + +    + +   ++  + + +  +      PS++        +G  V
Sbjct: 285  PVGQTTKGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSKM------VSVGDEV 338

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               VL+I  E K + L ++  Q        D+  +N       G ++ G+I  I     G
Sbjct: 339  EVMVLNIETETKRISLGMKQLQP----NPWDLVTENYPV----GSVIEGKIKNITDF--G 388

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            + + I   + G +H ++L           + E    P   Y +G+ ++  VL+I +    
Sbjct: 389  VFIGIEEGIDGLIHVSDLS----------WTERIKHPSEKYTKGETIQAVVLKIDKE--- 435

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
                  + R SL G+              P        +     +V+G + NVT  G F+
Sbjct: 436  ------NERFSL-GIKQL----------VPDPWQAAYNNYPSGTVVEGEITNVTDFGVFV 478

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
             L   ++  V +S LS   V++P   + +G  +   V++V    +++ +++KT
Sbjct: 479  KLEEGIEGLVHVSELSKDKVKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVKT 531


>gi|386394604|ref|ZP_10079385.1| ribosomal protein S1 [Desulfovibrio sp. U5L]
 gi|385735482|gb|EIG55680.1| ribosomal protein S1 [Desulfovibrio sp. U5L]
          Length = 576

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 152/351 (43%), Gaps = 34/351 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL 
Sbjct: 205 LEEGQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
                +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G  
Sbjct: 264 FDQDKQKVSLGMKQLVADPWENIAGKYPEGT-RL--SGKVTNLVDYGAFVELEAGVEGLV 320

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK---- 668
             SE+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V     
Sbjct: 321 HISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYP 378

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ G V  +T   + +     G   G     H++D     +  K V  PG  F    
Sbjct: 379 EGTVLEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGD 429

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV 
Sbjct: 430 TVMAKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVE 485

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 486 VEEGIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 166/384 (43%), Gaps = 35/384 (9%)

Query: 189 VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 248 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 303
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLG-----M 275

Query: 304 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
            + V    + I+      G  +S +V ++++ G  +       G V I  +  T    + 
Sbjct: 276 KQLVADPWENIA-GKYPEGTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHP 334

Query: 364 KNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIYDQSKVV 417
               +   +V   +L VDP  + + L +     NP+ ++  + P   V  G + + ++  
Sbjct: 335 SQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVKNITE-- 392

Query: 418 RVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEG 475
                 G+ + I          + +SD++  ++VR   + +K G  V  ++L   +  E 
Sbjct: 393 -----FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTVDKENEK 444

Query: 476 LATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
              GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +  +S  
Sbjct: 445 FTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRK 502

Query: 535 EIVKPGKKFKVGAELVFRVLGVKS 558
           ++  P + +K G E+  +V+ V +
Sbjct: 503 KVKTPAELYKEGDEIEAKVIHVSA 526



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 147/389 (37%), Gaps = 79/389 (20%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--- 641
           D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++   
Sbjct: 121 DDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKIN 176

Query: 642 ---SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV-------- 687
              S++  SRR+ L       R    DL+K    G  V+G V  +T   V V        
Sbjct: 177 RRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGL 233

Query: 688 -YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
            ++    + +   P E  HL D LE                ++L  D +   + L  K  
Sbjct: 234 MHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQL 278

Query: 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLS 803
           + +  + +   A      + + G V N+++ G FV     + G    S+    ++    S
Sbjct: 279 VADPWENI---AGKYPEGTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPS 335

Query: 804 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
           +  +VG  V   +L V+ +  RI+L +KQ   +  D                        
Sbjct: 336 QMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIV---------------------- 373

Query: 864 SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESG 917
                 E +  G+V+EG V    +FG+ +  E+      H     +    +  G   +SG
Sbjct: 374 -----AEKYPEGTVLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSG 428

Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             + A +L V K      L +K +  D +
Sbjct: 429 DTVMAKVLTVDKENEKFTLGIKQLSEDPW 457



 Score = 47.0 bits (110), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 86/451 (19%), Positives = 175/451 (38%), Gaps = 80/451 (17%)

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
            Y +  G  +  +P  H+   L     M +++   +EF ++L ++   SN+++S +  L  
Sbjct: 136  YTVDLGGVEAFLPGSHV--DLRPVPDMDALVGQEFEF-RVLKINRRRSNVIVSRRVLLEE 192

Query: 748  SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
                +  D    +     V G V NI E G FV  LG L G    +     +     +  
Sbjct: 193  RRDSMRKDLLKTLEEGQTVTGRVKNITEYGVFVD-LGGLDGLMHITDMSWKRIKHPKELV 251

Query: 807  YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
            ++G  +   +L  + +  +++L +KQ                  E IA            
Sbjct: 252  HLGDELELKVLSFDQDKQKVSLGMKQLVADPW------------ENIAG----------- 288

Query: 867  KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGS 918
            K+ EG    + + GKV    D+G  V  E  + V G +   +++           V  G 
Sbjct: 289  KYPEG----TRLSGKVTNLVDYGAFVELE--AGVEGLVHISEMSWTRKLRHPSQMVHVGD 342

Query: 919  VIQAAILDVAKAERLVDLSLKTV-------FIDRFREANSNRQAQKKKRKREASKDLGVH 971
             ++  +L V   ++ + L +K V         +++ E      + K     E    +G+ 
Sbjct: 343  EVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVKNIT--EFGIFIGIE 400

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSS 1031
              ++ ++ +                   + +S     + P + F +G +V+A V+ +   
Sbjct: 401  DGIDGLIHV-------------------SDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 1032 STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 1091
            +   +  L +K +SE   +     +   +Y VG++V+  +T I    L ++   G  G +
Sbjct: 442  NE--KFTLGIKQLSEDPWT-----RVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLV 494

Query: 1092 HITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            H++E++  K      L   +K G  + A++I
Sbjct: 495  HVSEISRKKVKTPAEL---YKEGDEIEAKVI 522


>gi|384208505|ref|YP_005594225.1| 30S ribosomal protein S1 [Brachyspira intermedia PWS/A]
 gi|343386155|gb|AEM21645.1| 30S ribosomal protein S1 [Brachyspira intermedia PWS/A]
          Length = 568

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 158/360 (43%), Gaps = 17/360 (4%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+ +   G+    ++++   ++ GKV  ++ FGA V+   G      +P+MS  +++ P
Sbjct: 187 LLEETQNAGIETFLNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVINP 246

Query: 540 GKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
                 G E +F+VL + K  R      K L +             D  +  G +T ++K
Sbjct: 247 KSIISKGEERMFKVLHIDKENRKVDLGIKQLDEDPWGKFVEQYHIDD--VIQGEVTNVKK 304

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 656
            G FV+  +G++G    S+L  +     P+     G  ++C+I+    A R++ L     
Sbjct: 305 FGAFVKVADGIEGLVHVSDLSWNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLKQV 364

Query: 657 --KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
              P    E D   + S V   V  +  N   V+ +  G  +G        D   +   M
Sbjct: 365 KENPWDTVEKDF-PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNM 420

Query: 715 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNI 772
           K  +K G E + +++ +D +   + LS K++  +S  +L   A   HP  S+V G V  I
Sbjct: 421 KDYVKEGEEVNMVIMSIDRDKQRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKAI 476

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +++G  +     L G+   S+    + + L +   VG++    + +VN    RI+LS ++
Sbjct: 477 VDSGAIISLEDDLEGYMHVSQVEIPKGSTLEEVLKVGETYPFVVREVNQSKRRISLSRRE 536



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 116/575 (20%), Positives = 217/575 (37%), Gaps = 88/575 (15%)

Query: 562  TVTHKKTLVKSKLAILSSYAEATDRLITHGWITK-----IEKHGCFVRFYNGVQGFAPRS 616
            T+   K L   ++    +  E+ +  ++ G I K      +    F+ F +  +G   RS
Sbjct: 9    TMEDNKNLSNDEIEFRKALEESDNTFLSRGKIVKGKVVQFDDTDVFIDFDSKSEGKIKRS 68

Query: 617  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---DDLVKLGSLV 673
            E   +P         +G+ ++  I+S       + LS      R S+   D+ VK  + +
Sbjct: 69   EFDKEP--------TIGEEIEA-IVSGEDDKGYVILSKSEIDKRKSQELIDNAVKNNTAI 119

Query: 674  SGVV-DVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQLLVL 730
            +GVV +VV  ++ V      G+    +  +       ++ A  +K     G EF +  V+
Sbjct: 120  TGVVKEVVRSDSKVA-----GFKVSIMGHQAFCPFSQIDLAKGIKESDYIGKEF-EFRVI 173

Query: 731  DNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
                 ++++S +  L+   Q   + +  +++  N +++G V NI + G FV       GF
Sbjct: 174  KKNGRDVVVSRRV-LLEETQNAGIETFLNNLQENDIINGKVKNIEKFGAFVEITPGFDGF 232

Query: 789  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
                     +  +       G+     +L ++ E  ++ L +KQ               L
Sbjct: 233  LAIPNMSWDKVINPKSIISKGEERMFKVLHIDKENRKVDLGIKQ---------------L 277

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYG 902
             E+               K+VE + I  VI+G+V     FG  V   +      H     
Sbjct: 278  DEDPWG------------KFVEQYHIDDVIQGEVTNVKKFGAFVKVADGIEGLVHVSDLS 325

Query: 903  FITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 962
            + +H       V+ G+ ++  ILD+  AER + L LK V               K+    
Sbjct: 326  WNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLKQV---------------KENPWD 370

Query: 963  EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL-NGQSV 1021
               KD  V   V   V+ + +N+ V  LP     I   S  D+       K ++  G+ V
Sbjct: 371  TVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEGICDISDFDWRNNIVNMKDYVKEGEEV 430

Query: 1022 IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 1081
               +M++       +L       S   T  S     + ++  GS+V   +  I      +
Sbjct: 431  NMVIMSIDRDKQRIKL-------SYKHTKDSPWRLFEKAHPQGSIVDGTVKAIVDSGAII 483

Query: 1082 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
                   G +H+++V   K + +E +    K+G+T
Sbjct: 484  SLEDDLEGYMHVSQVEIPKGSTLEEV---LKVGET 515



 Score = 47.0 bits (110), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            + +L  N I+ G VKN+   G F+ ++   D  + + N+S   V +P+     G+    +
Sbjct: 200  LNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFK 259

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            VL ++  +++V++ +K  D     +     +   H+ D++ G++  V+ +G F+ +
Sbjct: 260  VLHIDKENRKVDLGIKQLDEDPWGKF----VEQYHIDDVIQGEVTNVKKFGAFVKV 311



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 142/357 (39%), Gaps = 54/357 (15%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 38  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPTIGEEIEAIVSGEDD 89

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN----GVQGFAP 614
           K   +  K  + K K   L   A   +  IT G + ++ +    V  +     G Q F P
Sbjct: 90  KGYVILSKSEIDKRKSQELIDNAVKNNTAIT-GVVKEVVRSDSKVAGFKVSIMGHQAFCP 148

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLG 670
            S++ L  G + S   ++G+  + R++      +  SRR+ L         +  + ++  
Sbjct: 149 FSQIDLAKGIKESD--YIGKEFEFRVIKKNGRDVVVSRRVLLEETQNAGIETFLNNLQEN 206

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLV 729
            +++G V  +      V  I  G+  G +   +++   +     KS+I  G E   ++L 
Sbjct: 207 DIINGKVKNIEKFGAFVE-ITPGFD-GFLAIPNMS--WDKVINPKSIISKGEERMFKVLH 262

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +D E+  + L  K        QL  D         H + V+ G V N+ + G FV+    
Sbjct: 263 IDKENRKVDLGIK--------QLDEDPWGKFVEQYHIDDVIQGEVTNVKKFGAFVKVADG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 832
           + G    S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 315 IEGLVHVS--------DLSWNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLKQ 363


>gi|296125740|ref|YP_003632992.1| RNA binding S1 domain-containing protein [Brachyspira murdochii DSM
           12563]
 gi|296017556|gb|ADG70793.1| RNA binding S1 domain protein [Brachyspira murdochii DSM 12563]
          Length = 554

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 155/347 (44%), Gaps = 19/347 (5%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K   ++ GKV  ++ FGA ++   G      +P+MS  +++ P      G E +F+V
Sbjct: 187 NNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFKV 246

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L +  ++K++ +  K+         +  Y       +  G +T ++K G FV+  +G++G
Sbjct: 247 LHIDKENKKVDLGIKQLDEDPWGKFVEQYHIGD---VIQGEVTNVKKFGAFVKVADGIEG 303

Query: 612 FAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               S+L  +     PS     G  ++C+I+    A R++ L        P    E D  
Sbjct: 304 LVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVEKDF- 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 727
            + S V   V  +  N   V+ +  G  +G        D   +   MK  IK G + + +
Sbjct: 363 PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNMKDYIKEGEDVNMV 419

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRL 785
           ++ +D +   + LS K++   S  +L   A   HP  S+V G V  I+++G  V     L
Sbjct: 420 IMSIDRDKQRIKLSYKHTK-ESPWRLFEKA---HPQGSIVDGTVKAIVDSGAIVALEDDL 475

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            G+   S+    + + L +   VG++    + +VN    RI+LS ++
Sbjct: 476 EGYMHVSQVEIPKGSTLEEVVKVGETYPFVVREVNQSKRRISLSRRE 522



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 110/540 (20%), Positives = 203/540 (37%), Gaps = 80/540 (14%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP--GCEPSSMYHVGQVVKCRIMSSIP 645
            I  G + + +    F+ F +  +G   R+E   +P  G E  ++          I+S   
Sbjct: 31   IIKGKVVQFDDTDVFIDFESKSEGKIKRNEFDKEPIIGEEIEAIVSGEDDKGYVILSKSE 90

Query: 646  ASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
              +R +   +        D+ VK  S V+GVV  V      V ++     +   P   + 
Sbjct: 91   IDKRKSQELI--------DNAVKNNSTVTGVVKEVIKGGFKVSIMG---HQAFCPFSQI- 138

Query: 706  DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNS 763
               + A  +K     G E+ +  V+     ++++S + +L+   Q   + S  +++  N 
Sbjct: 139  ---DIARGIKETDYIGNEY-EFRVIKKNGRDVVVSRR-ALLEETQNASIESFLNNLKEND 193

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            +++G V NI + G F+       GF         +  +       G+     +L ++ E 
Sbjct: 194  IINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFKVLHIDKEN 253

Query: 824  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
             ++ L +KQ               L E+               K+VE + IG VI+G+V 
Sbjct: 254  KKVDLGIKQ---------------LDEDPWG------------KFVEQYHIGDVIQGEVT 286

Query: 884  ESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
                FG  V   +      H     + +H       V+ G+ ++  ILD+  AER + L 
Sbjct: 287  NVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLG 346

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            LK V               K+       KD  V   V   V+ + +N+ V  LP     I
Sbjct: 347  LKQV---------------KENPWDTVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEGI 391

Query: 998  GYASVSDYNTQKFPQKQFL-NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 1056
               S  D+       K ++  G+ V   +M++       R+ L  K   E+     ++A 
Sbjct: 392  CDISDFDWRNNIVNMKDYIKEGEDVNMVIMSIDRDKQ--RIKLSYKHTKESPWRLFEKAH 449

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
             +     GS+V   +  I      +       G +H+++V   K + +E +    K+G+T
Sbjct: 450  PQ-----GSIVDGTVKAIVDSGAIVALEDDLEGYMHVSQVEIPKGSTLEEV---VKVGET 501



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            + +L  N I+ G VKN+   G FI ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFK 245

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            VL ++  +K+V++ +K  D     +     +   H+GD++ G++  V+ +G F+ +
Sbjct: 246  VLHIDKENKKVDLGIKQLDEDPWGKF----VEQYHIGDVIQGEVTNVKKFGAFVKV 297



 Score = 43.5 bits (101), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 140/353 (39%), Gaps = 51/353 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G ++KGKV+  D     + F    +        +EF+     K+  +G E+   V G   
Sbjct: 29  GKIIKGKVVQFDDTDVFIDFESKSEGKI---KRNEFD-----KEPIIGEEIEAIVSGEDD 80

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           K   +  K  + K K   L   A   +  +T G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNSTVT-GVVKEVIKGGFKVSIM-GHQAFCPFSQI 138

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            +  G + +   ++G   + R++      +  SRR  L      +  S  + +K   +++
Sbjct: 139 DIARGIKETD--YIGNEYEFRVIKKNGRDVVVSRRALLEETQNASIESFLNNLKENDIIN 196

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 733
           G V  +      +  I  G+  G +   +++   +     KS+I  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFIE-ITPGFD-GFLAIPNMS--WDKVINPKSIISKGEERMFKVLHIDKE 252

Query: 734 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           +  + L  K        QL  D         H   V+ G V N+ + G FV+    + G 
Sbjct: 253 NKKVDLGIK--------QLDEDPWGKFVEQYHIGDVIQGEVTNVKKFGAFVKVADGIEGL 304

Query: 789 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 832
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQ 349


>gi|239908954|ref|YP_002955696.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
 gi|239798821|dbj|BAH77810.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
          Length = 576

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 152/351 (43%), Gaps = 34/351 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL 
Sbjct: 205 LEEGQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
                +++++  K+ +      I   Y E T R+   G +T +  +G FV    GV+G  
Sbjct: 264 FDQDKQKVSLGMKQLIADPWENIAGKYPEDT-RM--SGKVTNLVDYGAFVELEPGVEGLV 320

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK---- 668
             SE+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V     
Sbjct: 321 HISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYP 378

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ G V  +T   + +     G   G     H++D     +  K V  PG  F    
Sbjct: 379 EGTILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGD 429

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV 
Sbjct: 430 IVMAKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVE 485

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 486 VEEGIEGLVHVSEISRKKVKTPAEIYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 141/374 (37%), Gaps = 77/374 (20%)

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
           G +     GV+ F P S + L P  +  ++  VGQ  + R++      S++  SRR+ L 
Sbjct: 134 GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKINRRRSNVIVSRRVLLE 191

Query: 654 FMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPT 701
                 R    DL+K    G  V+G V  +T   V V         ++    + +   P 
Sbjct: 192 ERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGLMHITDMSWKRIKHPK 248

Query: 702 E--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
           E  HL D LE                ++L  D +   + L  K  + +  + +   A   
Sbjct: 249 ELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQLIADPWENI---AGKY 290

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILD 818
             ++ + G V N+++ G FV     + G    S+    ++    S+  +VG  V   +L 
Sbjct: 291 PEDTRMSGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLS 350

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  RI+L +KQ   +  D                              E +  G+++
Sbjct: 351 VDPDKKRISLGMKQVRPNPWDIV---------------------------AEKYPEGTIL 383

Query: 879 EGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
           EG V    +FG+ +  E+      H     +    +  G   +SG ++ A +L V K   
Sbjct: 384 EGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENE 443

Query: 933 LVDLSLKTVFIDRF 946
              L +K +  D +
Sbjct: 444 KFTLGIKQLSEDPW 457



 Score = 48.1 bits (113), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 189 VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 248 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----S 298
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLIA 280

Query: 299 DP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
           DP + ++    +D +            +S +V ++++ G  +       G V I  +  T
Sbjct: 281 DPWENIAGKYPEDTR------------MSGKVTNLVDYGAFVELEPGVEGLVHISEMSWT 328

Query: 358 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIY 411
               +     +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + 
Sbjct: 329 RKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVK 388

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF 470
           + ++        G+ + I          + +SD++  ++VR   + +K G  V  ++L  
Sbjct: 389 NITE-------FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTV 438

Query: 471 -RHLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
            +  E    GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +
Sbjct: 439 DKENEKFTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHV 496

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
             +S  ++  P + +K G E+  +V+ V +
Sbjct: 497 SEISRKKVKTPAEIYKEGDEIEAKVIHVSA 526


>gi|410465315|ref|ZP_11318650.1| ribosomal protein S1 [Desulfovibrio magneticus str. Maddingley
           MBC34]
 gi|409981573|gb|EKO38122.1| ribosomal protein S1 [Desulfovibrio magneticus str. Maddingley
           MBC34]
          Length = 576

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 152/351 (43%), Gaps = 34/351 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL 
Sbjct: 205 LEEGQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
                +++++  K+ +      I   Y E T R+   G +T +  +G FV    GV+G  
Sbjct: 264 FDQDKQKVSLGMKQLIADPWENIAGKYPEDT-RM--SGKVTNLVDYGAFVELEPGVEGLV 320

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK---- 668
             SE+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V     
Sbjct: 321 HISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYP 378

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ G V  +T   + +     G   G     H++D     +  K V  PG  F    
Sbjct: 379 EGTILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGD 429

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV 
Sbjct: 430 IVMAKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVE 485

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 486 VEEGIEGLVHVSEISRKKVKTPAEIYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 141/374 (37%), Gaps = 77/374 (20%)

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
           G +     GV+ F P S + L P  +  ++  VGQ  + R++      S++  SRR+ L 
Sbjct: 134 GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKINRRRSNVIVSRRVLLE 191

Query: 654 FMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPT 701
                 R    DL+K    G  V+G V  +T   V V         ++    + +   P 
Sbjct: 192 ERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGLMHITDMSWKRIKHPK 248

Query: 702 E--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
           E  HL D LE                ++L  D +   + L  K  + +  + +   A   
Sbjct: 249 ELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQLIADPWENI---AGKY 290

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILD 818
             ++ + G V N+++ G FV     + G    S+    ++    S+  +VG  V   +L 
Sbjct: 291 PEDTRMSGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLS 350

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  RI+L +KQ   +  D                              E +  G+++
Sbjct: 351 VDPDKKRISLGMKQVRPNPWDIV---------------------------AEKYPEGTIL 383

Query: 879 EGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
           EG V    +FG+ +  E+      H     +    +  G   +SG ++ A +L V K   
Sbjct: 384 EGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENE 443

Query: 933 LVDLSLKTVFIDRF 946
              L +K +  D +
Sbjct: 444 KFTLGIKQLSEDPW 457



 Score = 47.8 bits (112), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 189 VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 248 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----S 298
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLIA 280

Query: 299 DP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
           DP + ++    +D +            +S +V ++++ G  +       G V I  +  T
Sbjct: 281 DPWENIAGKYPEDTR------------MSGKVTNLVDYGAFVELEPGVEGLVHISEMSWT 328

Query: 358 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIY 411
               +     +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + 
Sbjct: 329 RKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVK 388

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF 470
           + ++        G+ + I          + +SD++  ++VR   + +K G  V  ++L  
Sbjct: 389 NITE-------FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTV 438

Query: 471 -RHLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
            +  E    GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +
Sbjct: 439 DKENEKFTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHV 496

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
             +S  ++  P + +K G E+  +V+ V +
Sbjct: 497 SEISRKKVKTPAEIYKEGDEIEAKVIHVSA 526


>gi|302824003|ref|XP_002993649.1| hypothetical protein SELMODRAFT_431704 [Selaginella moellendorffii]
 gi|300138577|gb|EFJ05341.1| hypothetical protein SELMODRAFT_431704 [Selaginella moellendorffii]
          Length = 375

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 17/132 (12%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V I Q V  YV +V ++WA L    HLK  LFILD++ +PSEL+ F+ RF +G     H+
Sbjct: 65   VIIEQSVIRYVQEVKDKWAWLV---HLKGCLFILDTSDDPSELERFKERFKVGDPFQCHI 121

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             S+N E+K + L L           +  S++  +    +GD++G +++++ +GVGG  VQ
Sbjct: 122  RSVNHERKQVDLSLH----------LKTSDEQFK----KGDLLGRQMTRVFAGVGGHTVQ 167

Query: 1281 IGPHLYGRVHFT 1292
                 +G+VH T
Sbjct: 168  GRWETFGKVHVT 179


>gi|78355554|ref|YP_387003.1| 30S ribosomal protein S1 [Desulfovibrio alaskensis G20]
 gi|78217959|gb|ABB37308.1| ribosomal protein S1 [Desulfovibrio alaskensis G20]
          Length = 574

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 159/352 (45%), Gaps = 34/352 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G +V GK   +  +G  V   GG+  L  +  MS   I  P +   +G EL  ++L 
Sbjct: 202 LEEGQIVTGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKELVSLGQELELKILS 260

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               S+++++  K+ +      I S Y E   RL  +G +T +  +G FV    GV+G  
Sbjct: 261 FDRDSQKVSLGMKQLVNDPWADITSKYPENA-RL--NGKVTNLVDYGAFVELEPGVEGLV 317

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--- 669
             SE+        PS M  VG  V+  I+   P  +RI+L   MK  + +  ++V     
Sbjct: 318 HISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLG--MKQVKPNPWEVVAEKYP 375

Query: 670 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ GV+  +T   + +     G   G     H++D     +  K +  P   ++   
Sbjct: 376 EGTILEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKIRHPNELYNVGD 426

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D ES    L  K    +   ++P++    +P  ++V+G V NI + G FV 
Sbjct: 427 TVQAKVLTVDQESEKFTLGVKQLTEDPWSKVPAN----YPVGTLVNGVVTNITDFGLFVE 482

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               + G    S+    +    S+ +  G ++++ ++ V++E  R+ LS+KQ
Sbjct: 483 VEEGIEGLVHVSEISQKKVKSPSEMFKEGVTIQAKVIHVSAEERRLGLSIKQ 534



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 138/612 (22%), Positives = 238/612 (38%), Gaps = 106/612 (17%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQF----PGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            D++ G +VKG+V+ VD    +V       G + A       SEF+  +     KVG  + 
Sbjct: 30   DLEEGSIVKGEVVRVDGDYVLVDVNFKSEGQIAA-------SEFKDAEGNLAIKVGDTVD 82

Query: 551  FRVLGVKSKRITVT-----HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
              V        T+T      K+  V  KL  +   +E T    T G I +  K G  V  
Sbjct: 83   VFVARKNEMEGTITLSFEKAKRMQVFDKLEEVQE-SEGT----TCGRIIRRIKGGYTVDL 137

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPT 659
              GV+ F P S + L P  +  ++  V Q    R++      S++  SRR+ L       
Sbjct: 138  -GGVEAFLPGSHVDLRPVPDMDAL--VNQEFDFRVLKINRRRSNVIVSRRVLLEEERDSK 194

Query: 660  RVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHAT 712
            R    DL+K    G +V+G    +T   V V +   G   G +   H+ D     + H  
Sbjct: 195  R---QDLLKTLEEGQIVTGKAKNITEYGVFVDL---GGLDGLL---HITDMSWKRIRHP- 244

Query: 713  VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVC 770
              K ++  G E + ++L  D +S  + L  K  L+N      +D +  +P N+ ++G V 
Sbjct: 245  --KELVSLGQELELKILSFDRDSQKVSLGMK-QLVNDPW---ADITSKYPENARLNGKVT 298

Query: 771  NIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            N+++ G FV     + G    S+    ++    S+   VG  V   IL V+ +  RI+L 
Sbjct: 299  NLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLG 358

Query: 830  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
            +KQ                           K N  E+   E +  G+++EG +    +FG
Sbjct: 359  MKQ--------------------------VKPNPWEVV-AEKYPEGTILEGVIKNITEFG 391

Query: 890  VVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
            + +  E+      H     +    +        G  +QA +L V +      L +K +  
Sbjct: 392  MFIGIEDGIDGLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVDQESEKFTLGVKQLTE 451

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 1003
            D + +  +N                 V   VN +V  + +  L + + E    + + S  
Sbjct: 452  DPWSKVPAN---------------YPVGTLVNGVVTNITDFGLFVEVEEGIEGLVHVSEI 496

Query: 1004 DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV 1063
                 K P + F  G ++ A V+ +  S+   RL L +K I + E     +  +    + 
Sbjct: 497  SQKKVKSPSEMFKEGVTIQAKVIHV--SAEERRLGLSIKQIKDDEERRRPKEFRSGPAEA 554

Query: 1064 GSLVQAEITEIK 1075
            G     +I ++K
Sbjct: 555  GGQTLGDILKLK 566



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            I++G +KN+T  G FI +   +D  + +S++S    +  P + + +G  V  +VL+V+  
Sbjct: 379  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVDQE 438

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            S++  + +K       S+      +N  VG +V G +  +  +GLF+ +E
Sbjct: 439  SEKFTLGVKQLTEDPWSKVP----ANYPVGTLVNGVVTNITDFGLFVEVE 484



 Score = 44.3 bits (103), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 89/445 (20%), Positives = 176/445 (39%), Gaps = 68/445 (15%)

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
            Y +  G  +  +P  H+   L     M +++   ++F ++L ++   SN+++S +  L  
Sbjct: 133  YTVDLGGVEAFLPGSHV--DLRPVPDMDALVNQEFDF-RVLKINRRRSNVIVSRRVLLEE 189

Query: 748  SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
                   D    +    +V G   NI E G FV  LG L G    +     +     +  
Sbjct: 190  ERDSKRQDLLKTLEEGQIVTGKAKNITEYGVFVD-LGGLDGLLHITDMSWKRIRHPKELV 248

Query: 807  YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
             +GQ +   IL  + ++ +++L +KQ               L+ +  A + S     + L
Sbjct: 249  SLGQELELKILSFDRDSQKVSLGMKQ---------------LVNDPWADITSKYPENARL 293

Query: 867  KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGS 918
                         GKV    D+G  V  E    V G +   +++           V  G 
Sbjct: 294  N------------GKVTNLVDYGAFVELE--PGVEGLVHISEMSWTRKLRHPSQMVRVGD 339

Query: 919  VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
             ++  IL V   ++ + L +K V          N      ++  E +        +  ++
Sbjct: 340  EVEVVILGVDPDKKRISLGMKQV--------KPNPWEVVAEKYPEGT-------ILEGVI 384

Query: 979  EIVKENYLVLSLPE-YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
            + + E  + + + +  +  I  + +S     + P + +  G +V A V+ +   S   + 
Sbjct: 385  KNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVDQESE--KF 442

Query: 1038 LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 1097
             L +K ++E   S     K  ++Y VG+LV   +T I    L ++   G  G +H++E++
Sbjct: 443  TLGVKQLTEDPWS-----KVPANYPVGTLVNGVVTNITDFGLFVEVEEGIEGLVHVSEIS 497

Query: 1098 DDKSNVVENLFSNFKIGQTVTARII 1122
              K   V++    FK G T+ A++I
Sbjct: 498  QKK---VKSPSEMFKEGVTIQAKVI 519


>gi|357634293|ref|ZP_09132171.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
 gi|357582847|gb|EHJ48180.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
          Length = 576

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 152/351 (43%), Gaps = 34/351 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL 
Sbjct: 205 LEEGQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
                +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G  
Sbjct: 264 FDQDKQKVSLGMKQLVADPWENIAGKYPEDT-RL--SGKVTNLVDYGAFVELEAGVEGLV 320

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK---- 668
             SE+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V     
Sbjct: 321 HISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYP 378

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ G V  +T   + +     G   G     H++D     +  K V  PG  F    
Sbjct: 379 EGTVLEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGD 429

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV 
Sbjct: 430 TVMAKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVE 485

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 486 VEEGIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 148/389 (38%), Gaps = 79/389 (20%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--- 641
           D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++   
Sbjct: 121 DDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKIN 176

Query: 642 ---SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV-------- 687
              S++  SRR+ L       R    DL+K    G  V+G V  +T   V V        
Sbjct: 177 RRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGL 233

Query: 688 -YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
            ++    + +   P E  HL D LE                ++L  D +   + L  K  
Sbjct: 234 MHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQL 278

Query: 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLS 803
           + +  + +   A     ++ + G V N+++ G FV     + G    S+    ++    S
Sbjct: 279 VADPWENI---AGKYPEDTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPS 335

Query: 804 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
           +  +VG  V   +L V+ +  RI+L +KQ   +  D                        
Sbjct: 336 QMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIV---------------------- 373

Query: 864 SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESG 917
                 E +  G+V+EG V    +FG+ +  E+      H     +    +  G   +SG
Sbjct: 374 -----AEKYPEGTVLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSG 428

Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             + A +L V K      L +K +  D +
Sbjct: 429 DTVMAKVLTVDKENEKFTLGIKQLSEDPW 457



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 189 VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 248 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----S 298
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLVA 280

Query: 299 DP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
           DP + ++    +D +            +S +V ++++ G  +       G V I  +  T
Sbjct: 281 DPWENIAGKYPEDTR------------LSGKVTNLVDYGAFVELEAGVEGLVHISEMSWT 328

Query: 358 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIY 411
               +     +   +V   +L VDP  + + L +     NP+ ++  + P   V  G + 
Sbjct: 329 RKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVK 388

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF 470
           + ++        G+ + I          + +SD++  ++VR   + +K G  V  ++L  
Sbjct: 389 NITE-------FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTV 438

Query: 471 -RHLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
            +  E    GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +
Sbjct: 439 DKENEKFTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHV 496

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
             +S  ++  P + +K G E+  +V+ V +
Sbjct: 497 SEISRKKVKTPAELYKEGDEIEAKVIHVSA 526



 Score = 43.9 bits (102), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 85/451 (18%), Positives = 174/451 (38%), Gaps = 80/451 (17%)

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
            Y +  G  +  +P  H+   L     M +++   +EF ++L ++   SN+++S +  L  
Sbjct: 136  YTVDLGGVEAFLPGSHV--DLRPVPDMDALVGQEFEF-RVLKINRRRSNVIVSRRVLLEE 192

Query: 748  SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
                +  D    +     V G V NI E G FV  LG L G    +     +     +  
Sbjct: 193  RRDSMRKDLLKTLEEGQTVTGRVKNITEYGVFVD-LGGLDGLMHITDMSWKRIKHPKELV 251

Query: 807  YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
            ++G  +   +L  + +  +++L +KQ                  E IA            
Sbjct: 252  HLGDELELKVLSFDQDKQKVSLGMKQLVADPW------------ENIAG----------- 288

Query: 867  KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGS 918
            K+ E     + + GKV    D+G  V  E  + V G +   +++           V  G 
Sbjct: 289  KYPED----TRLSGKVTNLVDYGAFVELE--AGVEGLVHISEMSWTRKLRHPSQMVHVGD 342

Query: 919  VIQAAILDVAKAERLVDLSLKTV-------FIDRFREANSNRQAQKKKRKREASKDLGVH 971
             ++  +L V   ++ + L +K V         +++ E      + K     E    +G+ 
Sbjct: 343  EVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVKNIT--EFGIFIGIE 400

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSS 1031
              ++ ++ +                   + +S     + P + F +G +V+A V+ +   
Sbjct: 401  DGIDGLIHV-------------------SDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 1032 STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 1091
            +   +  L +K +SE   +     +   +Y VG++V+  +T I    L ++   G  G +
Sbjct: 442  NE--KFTLGIKQLSEDPWT-----RVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLV 494

Query: 1092 HITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            H++E++  K      L   +K G  + A++I
Sbjct: 495  HVSEISRKKVKTPAEL---YKEGDEIEAKVI 522



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            +++G VKN+T  G FI +   +D  + +S++S    V  P + F  G  V  +VL+V+  
Sbjct: 382  VLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1489
            +++  + +K       S+     + + + VG +V G +  +  +GLF+ +E
Sbjct: 442  NEKFTLGIK-----QLSEDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVE 487


>gi|156348524|ref|XP_001621880.1| hypothetical protein NEMVEDRAFT_v1g143336 [Nematostella vectensis]
 gi|156208203|gb|EDO29780.1| predicted protein [Nematostella vectensis]
          Length = 135

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 10/129 (7%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA--------ELVFR 552
           +++G +I ++ FG +V     +K L    H+++  +  P KK   G             +
Sbjct: 7   ILQGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVVNKRLINPFTLQ 66

Query: 553 VLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL V    +R+ +THKKT+V S L +++ Y++A     +HG+IT + ++GC V FYN V+
Sbjct: 67  VLTVDPGQRRLHLTHKKTMVSSILQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVK 126

Query: 611 GFAPRSELG 619
           G  P+ +LG
Sbjct: 127 GLVPKDQLG 135



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 13/108 (12%)

Query: 696 KGTIPTEHLADHL---------EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 745
           KG +   HLAD +         E   V K +I P   F  Q+L +D     L L+ K ++
Sbjct: 29  KGLVTNMHLADIILKHPEKKLTEGKVVNKRLINP---FTLQVLTVDPGQRRLHLTHKKTM 85

Query: 746 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
           ++S  Q+ +  S   P +  HG++ ++ E GC V F   + G  P+ +
Sbjct: 86  VSSILQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVKGLVPKDQ 133


>gi|445064615|ref|ZP_21376633.1| 30S ribosomal protein S1 [Brachyspira hampsonii 30599]
 gi|444504009|gb|ELV04753.1| 30S ribosomal protein S1 [Brachyspira hampsonii 30599]
          Length = 554

 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 161/361 (44%), Gaps = 19/361 (5%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+ +   G+    ++++   ++ GKV  ++ FGA V+   G      +P+MS  ++V P
Sbjct: 173 LLEEAQNAGIETFLNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNP 232

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
                 G E +F+VL +  ++K++ +  K+         +  Y       +  G +T ++
Sbjct: 233 KSIISKGEERMFKVLHIDKENKKVDLGIKQLDEDPWGKFVEQYQIGD---VIQGEVTNVK 289

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           K G FV+  +G++G    S+L  +     P+     G  ++C+I+    A R++ L    
Sbjct: 290 KFGAFVKVADGIEGLVHVSDLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLKQ 349

Query: 657 ---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
               P    E D   + S V   V  +  N   V+ +  G  +G        D   +   
Sbjct: 350 VKENPWDTVEKDF-PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVN 405

Query: 714 MKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCN 771
           MK  +K G E + +++ +D +   + LS K++  +S  +L   A   HP  S+V G V  
Sbjct: 406 MKDYVKEGEEANMVIMSIDRDKQRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKA 461

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           I+++G  +     L G+   S+    + + L     VG++    + +VN    RI+LS +
Sbjct: 462 IVDSGAIIALEDDLEGYMHISQVEIPKGSTLEDVLKVGETYPFVVREVNKSKRRISLSRR 521

Query: 832 Q 832
           +
Sbjct: 522 E 522



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 115/566 (20%), Positives = 207/566 (36%), Gaps = 85/566 (15%)

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITK-----IEKHGCFVRFYNGVQGFAPRSELGLD 621
            K L   ++    +  E+ +  ++ G I K      +    F+ F +  +G   RSE   +
Sbjct: 5    KNLSNDEIEFRKALEESDNTFLSRGKIVKGKVVQFDDTDVFIDFDSKSEGKIKRSEFDKE 64

Query: 622  P--GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV 679
            P  G E  ++          I+S     +R +   +        D+ VK  + V+GVV  
Sbjct: 65   PIIGEEIEAIVSGEDDKGYVILSKSEIDKRKSQELI--------DNAVKNNTSVTGVVKE 116

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
            V      V ++     +   P   +   L         I   YEF    V+     ++++
Sbjct: 117  VVKGGFKVSIMG---HQAFCPFSQI--DLARGIKESDYIGKEYEF---RVIKKNGRDVVV 168

Query: 740  SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            S +  L+  AQ   + +  +++  N +++G V NI + G FV       GF         
Sbjct: 169  SRRV-LLEEAQNAGIETFLNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWD 227

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
            +  +       G+     +L ++ E  ++ L +KQ               L E+      
Sbjct: 228  KVVNPKSIISKGEERMFKVLHIDKENKKVDLGIKQ---------------LDEDPWG--- 269

Query: 858  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAG 911
                     K+VE + IG VI+G+V     FG  V   +      H     + +H     
Sbjct: 270  ---------KFVEQYQIGDVIQGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPA 320

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              V+ G+ ++  ILD+  AER + L LK V               K+       KD  V 
Sbjct: 321  DFVKKGAFLECKILDMNAAERKLTLGLKQV---------------KENPWDTVEKDFPVK 365

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL-NGQSVIATVMALPS 1030
              V   V+ + +N+ V  LP     I   S  D+       K ++  G+     +M++  
Sbjct: 366  SAVKCKVKRIIKNFAVFELPNGLEGICDISDFDWRNNIVNMKDYVKEGEEANMVIMSIDR 425

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGR 1090
                 +L       S   T  S     + ++  GS+V   +  I      +       G 
Sbjct: 426  DKQRIKL-------SYKHTKDSPWRLFEKAHPQGSIVDGTVKAIVDSGAIIALEDDLEGY 478

Query: 1091 IHITEVNDDKSNVVENLFSNFKIGQT 1116
            +HI++V   K + +E++    K+G+T
Sbjct: 479  MHISQVEIPKGSTLEDV---LKVGET 501



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            + +L  N I+ G VKN+   G F+ ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNPKSIISKGEERMFK 245

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            VL ++  +K+V++ +K  D     +     +    +GD++ G++  V+ +G F+ +
Sbjct: 246  VLHIDKENKKVDLGIKQLDEDPWGKF----VEQYQIGDVIQGEVTNVKKFGAFVKV 297



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 140/353 (39%), Gaps = 51/353 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 29  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPIIGEEIEAIVSGEDD 80

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           K   +  K  + K K   L   A   +  +T G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNTSVT-GVVKEVVKGGFKVSIM-GHQAFCPFSQI 138

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            L  G + S   ++G+  + R++      +  SRR+ L         +  + ++   +++
Sbjct: 139 DLARGIKESD--YIGKEYEFRVIKKNGRDVVVSRRVLLEEAQNAGIETFLNNLQENDIIN 196

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 733
           G V  +      V  I  G+  G +   +++   +     KS+I  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFVE-ITPGFD-GFLAIPNMS--WDKVVNPKSIISKGEERMFKVLHIDKE 252

Query: 734 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           +  + L  K        QL  D             V+ G V N+ + G FV+    + G 
Sbjct: 253 NKKVDLGIK--------QLDEDPWGKFVEQYQIGDVIQGEVTNVKKFGAFVKVADGIEGL 304

Query: 789 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 832
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLKQ 349


>gi|148270479|ref|YP_001244939.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila
           RKU-1]
 gi|147736023|gb|ABQ47363.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1]
          Length = 543

 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 112/531 (21%), Positives = 222/531 (41%), Gaps = 57/531 (10%)

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           V E E+ K   +YK G  + ++IL   + E       +    + L     D +    VK 
Sbjct: 49  VPENELIKSLDEYKVGENLTLQILNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKA 108

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPH--MSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 562
           ++++    G  V   G V A  P  H  +   + + P K+ +V   ++  ++  K     
Sbjct: 109 RIVSQTKGGYNVLLKGVVSAFLPGSHSLLRRNDPI-PEKEIEV---IILEMVQTKRGSRI 164

Query: 563 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
           V  ++ L   K+    S  +  D  I  G +  I   G  V    G++GF P+SEL  D 
Sbjct: 165 VVSRRALQDRKIEEFFSEKKVGD--IIEGTVKGISNAGVEVEISEGIRGFIPKSELSYDN 222

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVV 680
              P  +   GQ +  +I+      + + LS   +M        +   +G +V G  +V+
Sbjct: 223 RISPEDVVKPGQNITAKIIELDERKKNVILSLKRLMPDPWEKVKEKYPVGKVVGG--EVI 280

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLVLDNESS 735
           + ++   +V  +   +G +P   +       +LE    +  ++K      +++ +D E+ 
Sbjct: 281 SIHSFGFFVRLEPGVEGLVPRSEVFWGNARKNLEEVVSVGDLVKV-----EVINVDKENR 335

Query: 736 NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
            L LS + +  +  + +       + N+VV G V  II+ G FV     + GF P S+  
Sbjct: 336 KLTLSYRKAKGDPWENI---EDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEIS 392

Query: 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
             +  +  +   +G+ V+  IL ++ E  +ITLS++++  +  + +              
Sbjct: 393 WKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIRRTQENPWERAL------------- 439

Query: 856 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 915
                    ELK        S++ G +    + GV+V  E++ DV GF+ ++ L  +  E
Sbjct: 440 --------KELK------PDSIVRGTIERIVNSGVIVKVEKY-DVEGFVPNNHLV-SEPE 483

Query: 916 SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 966
           +G ++   +L +   E       + +  ++  E   N +  KK  ++E+S+
Sbjct: 484 TGKILNLVVLRIDPDEV---FGGRMILSEKRYEERKNIEEYKKMVEKESSQ 531



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 212/518 (40%), Gaps = 69/518 (13%)

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRS 286
           E  + G ++T  V   ED G ++ FG  S  GF+P N L ++     V   L LQ  + +
Sbjct: 17  EEFRRGQIVTGVVIGKEDGGVVVDFGGKS-EGFVPENELIKSLDEYKVGENLTLQ--ILN 73

Query: 287 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV--QSILENGVMLSFLTY 344
           ++   + + LS     + K + +  K       V   +VS      ++L  GV+ +FL  
Sbjct: 74  LNYEERSI-LSERRPVLRKTLEELRKDYEEKKPVKARIVSQTKGGYNVLLKGVVSAFLP- 131

Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-- 402
             G+  +    +  P           K++   IL +  T R   + ++   L +R     
Sbjct: 132 --GSHSLLRRNDPIP----------EKEIEVIILEMVQTKRGSRIVVSRRALQDRKIEEF 179

Query: 403 -SHVKVGDIYD------QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
            S  KVGDI +       +  V V+   G+   IP + +S    ++  DV          
Sbjct: 180 FSEKKVGDIIEGTVKGISNAGVEVEISEGIRGFIPKSELSYDNRISPEDVV--------- 230

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
             K G  +  +I+     +      LK    +           G VV G+VI++ SFG  
Sbjct: 231 --KPGQNITAKIIELDERKKNVILSLKRLMPDPWEKVKEKYPVGKVVGGEVISIHSFGFF 288

Query: 516 VQFPGGVKALCPLPHM-------SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
           V+   GV+ L P   +       +  E+V  G   KV       V+ V  +++++T++++
Sbjct: 289 VRLEPGVEGLVPRSEVFWGNARKNLEEVVSVGDLVKV------EVINVDKENRKLTLSYR 342

Query: 567 KTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
           K       A    +    DR     +  G +T I K G FV    GV+GF P SE+    
Sbjct: 343 K-------AKGDPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKR 395

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVSGVVDVV 680
             EP  +  +G+ VK +I+     +R+I LS         E  L  +K  S+V G ++ +
Sbjct: 396 IDEPGEILKIGEKVKVKILKIDKENRKITLSIRRTQENPWERALKELKPDSIVRGTIERI 455

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 718
             + V+V V  K   +G +P  HL    E   ++  V+
Sbjct: 456 VNSGVIVKV-EKYDVEGFVPNNHLVSEPETGKILNLVV 492



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 1367 GKHLEKIED-LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1425
            G   E IED  + N +V G V  +  +G F+ L   ++  V +S +S   ++ P +   I
Sbjct: 346  GDPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKI 405

Query: 1426 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1485
            G+ V  ++L ++  ++++ ++++    RT        L  L    IV G I+R+ + G+ 
Sbjct: 406  GEKVKVKILKIDKENRKITLSIR----RTQENPWERALKELKPDSIVRGTIERIVNSGVI 461

Query: 1486 ITIENTNL 1493
            + +E  ++
Sbjct: 462  VKVEKYDV 469


>gi|429124418|ref|ZP_19184950.1| 30S ribosomal protein S1 [Brachyspira hampsonii 30446]
 gi|426279657|gb|EKV56678.1| 30S ribosomal protein S1 [Brachyspira hampsonii 30446]
          Length = 554

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 161/361 (44%), Gaps = 19/361 (5%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+ +   G+    ++++   ++ GKV  ++ FGA V+   G      +P+MS  ++V P
Sbjct: 173 LLEEAQNAGIETFLNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNP 232

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
                 G E +F+VL +  ++K++ +  K+         +  Y       +  G +T ++
Sbjct: 233 KSIISKGEERMFKVLHIDKENKKVDLGIKQLDEDPWGKFVEQYHIGD---VIQGEVTNVK 289

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           K G FV+  +G++G    S+L  +     P+     G  ++C+I+    A R++ L    
Sbjct: 290 KFGAFVKVTDGIEGLVHVSDLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLKQ 349

Query: 657 ---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
               P    E D   + S V   V  +  N   V+ +  G  +G        D   +   
Sbjct: 350 VKENPWDTVERDF-PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVN 405

Query: 714 MKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCN 771
           MK  +K G E + +++ +D +   + LS K++  +S  +L   A   HP  S+V G V  
Sbjct: 406 MKDYVKEGEEANMVIMSIDRDKQRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKA 461

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           I+++G  +     L G+   S+    + + L     VG++    + +VN    RI+LS +
Sbjct: 462 IVDSGAIISLEDDLEGYMHVSQVEIPKGSTLEDVLKVGETYPFVVREVNKSKRRISLSRR 521

Query: 832 Q 832
           +
Sbjct: 522 E 522



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 115/567 (20%), Positives = 210/567 (37%), Gaps = 87/567 (15%)

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITK-----IEKHGCFVRFYNGVQGFAPRSELGLD 621
            K L   ++    +  E+ +  ++ G I K      +    F+ F +  +G   RSE   +
Sbjct: 5    KNLSNDEIEFRKALEESDNTFLSRGKIVKGKVVQFDDTDVFIDFDSKSEGKIKRSEFDKE 64

Query: 622  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---DDLVKLGSLVSGVVD 678
            P         +G+ ++  I+S       + LS      R S+   D+ VK  + V+GVV 
Sbjct: 65   P--------TIGEEIEA-IVSGEDDKGYVILSKSEIDKRKSQELIDNAVKNNASVTGVVK 115

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
             V      V ++     +   P   +   L         I   YEF    V+     +++
Sbjct: 116  EVIKGGFKVSIMG---HQAFCPFSQI--DLARGIKESDYIGKEYEF---RVIKKNGRDVV 167

Query: 739  LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            +S +  L+  AQ   + +  +++  N +++G V NI + G FV       GF        
Sbjct: 168  VSRRV-LLEEAQNAGIETFLNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSW 226

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
             +  +       G+     +L ++ E  ++ L +KQ               L E+     
Sbjct: 227  DKVVNPKSIISKGEERMFKVLHIDKENKKVDLGIKQ---------------LDEDPWG-- 269

Query: 857  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLA 910
                      K+VE + IG VI+G+V     FG  V   +      H     + +H    
Sbjct: 270  ----------KFVEQYHIGDVIQGEVTNVKKFGAFVKVTDGIEGLVHVSDLSWNSHVNNP 319

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
               V+ G+ ++  ILD+  AER + L LK V               K+       +D  V
Sbjct: 320  ADFVKKGAFLECKILDMNAAERKLTLGLKQV---------------KENPWDTVERDFPV 364

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL-NGQSVIATVMALP 1029
               V   V+ + +N+ V  LP     I   S  D+       K ++  G+     +M++ 
Sbjct: 365  KSAVKCKVKRIIKNFAVFELPNGLEGICDISDFDWRNNIVNMKDYVKEGEEANMVIMSID 424

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
                  +L       S   T  S     + ++  GS+V   +  I      +       G
Sbjct: 425  RDKQRIKL-------SYKHTKDSPWRLFEKAHPQGSIVDGTVKAIVDSGAIISLEDDLEG 477

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQT 1116
             +H+++V   K + +E++    K+G+T
Sbjct: 478  YMHVSQVEIPKGSTLEDV---LKVGET 501



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            + +L  N I+ G VKN+   G F+ ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNPKSIISKGEERMFK 245

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            VL ++  +K+V++ +K  D     +     +   H+GD++ G++  V+ +G F+ +
Sbjct: 246  VLHIDKENKKVDLGIKQLDEDPWGKF----VEQYHIGDVIQGEVTNVKKFGAFVKV 297



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 141/353 (39%), Gaps = 51/353 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 29  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPTIGEEIEAIVSGEDD 80

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           K   +  K  + K K   L   A   +  +T G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNASVT-GVVKEVIKGGFKVSIM-GHQAFCPFSQI 138

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            L  G + S   ++G+  + R++      +  SRR+ L         +  + ++   +++
Sbjct: 139 DLARGIKESD--YIGKEYEFRVIKKNGRDVVVSRRVLLEEAQNAGIETFLNNLQENDIIN 196

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 733
           G V  +      V  I  G+  G +   +++   +     KS+I  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFVE-ITPGFD-GFLAIPNMS--WDKVVNPKSIISKGEERMFKVLHIDKE 252

Query: 734 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           +  + L  K        QL  D         H   V+ G V N+ + G FV+    + G 
Sbjct: 253 NKKVDLGIK--------QLDEDPWGKFVEQYHIGDVIQGEVTNVKKFGAFVKVTDGIEGL 304

Query: 789 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 832
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLKQ 349


>gi|239616621|ref|YP_002939943.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505452|gb|ACR78939.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 572

 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 193/479 (40%), Gaps = 52/479 (10%)

Query: 447 EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE-GLVFTHSDVKPGMVVKGK 505
           E E+ K  K+Y  G  + V+I+     EG +    K   F   L    +  K G  V G 
Sbjct: 59  ESELVKPLKEYNIGDKIEVQIMKVDEDEGRSVVSEKRIYFRTALKKVENAYKSGEPVTGT 118

Query: 506 VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTH 565
           ++     G  V+    V A  P         ++ G+    G E  F+V+  + K+     
Sbjct: 119 ILGETKGGYNVKLLNVVPAFLPGSQSG----IRRGRPIPEG-EQEFKVINFRKKKRGTNI 173

Query: 566 KKTLVKSKLAILSSYAEATDRLIT-HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
             +L   K   + +Y EA +   T  G I  I+  G FVR  N V G  P SE+  DP  
Sbjct: 174 VVSLTAFKEEKVKAYFEALETGSTVEGTIESIKDFGAFVRLTNEVVGLIPASEVSWDPSQ 233

Query: 625 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVT 681
           +   + +VG  V  +++   P  ++I+LS       P    E+    +GS+V GVV  + 
Sbjct: 234 KVHDVLNVGDKVTVKVIDVDPEKKKISLSLKQLQEDPWNTVEEKY-PVGSVVEGVVKSIV 292

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV----LDNESSNL 737
           P    V +I  G       +E    ++     +K +I+ G   D++ V    +D E   L
Sbjct: 293 PFGFFV-MIEPGVEGLVHISEVFWGNVRRD--LKELIREG---DRVKVKIKDIDKEKRTL 346

Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            LS + +L +    +           +V G V  ++ TG  V     ++GF P S+    
Sbjct: 347 SLSYREALGDPWDNI---EEKYKVGEIVDGKVVKVLPTGAIVELEEYVSGFVPVSEMSWN 403

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
               +         V++ IL ++ E  R+ LSLKQ    +T+  + + H           
Sbjct: 404 FVDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQ----ATEDPWQKVH----------- 448

Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
                 +ELK      +G  +EGK+      G VV  + +  V  F+   Q+A   VE+
Sbjct: 449 ------TELK------VGDYVEGKITRLIKSGAVVMVDGYG-VEAFLPASQVAMKRVEN 494



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 141/349 (40%), Gaps = 52/349 (14%)

Query: 1143 SMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1202
            S+    E   K  FE  +   G  V G +  + +  A + ++  +   +   + +++PS 
Sbjct: 176  SLTAFKEEKVKAYFEALET--GSTVEGTIESIKDFGAFVRLTNEVVGLIPASEVSWDPS- 232

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1262
             Q+     ++G  VT  V+ ++ EKK + L L+  Q+       D  N   + +   G +
Sbjct: 233  -QKVHDVLNVGDKVTVKVIDVDPEKKKISLSLKQLQE-------DPWNTVEEKY-PVGSV 283

Query: 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
            V G +  I+    G  V I P + G VH +E+    V   L               EG  
Sbjct: 284  VEGVVKSIVPF--GFFVMIEPGVEGLVHISEVFWGNVRRDLKEL----------IREGDR 331

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1382
            VK K+ +I +  R    + LS R +L                 P  ++E  E      IV
Sbjct: 332  VKVKIKDIDKEKR---TLSLSYREALG---------------DPWDNIE--EKYKVGEIV 371

Query: 1383 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
             G V  V   G  + L   +   V +S +S  +V+  E        V  ++LS++  ++R
Sbjct: 372  DGKVVKVLPTGAIVELEEYVSGFVPVSEMSWNFVDRVEDVVKESSEVKTKILSIDKENRR 431

Query: 1443 VEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            + ++LK  T D      +E      L VGD V G+I R+   G  + ++
Sbjct: 432  MRLSLKQATEDPWQKVHTE------LKVGDYVEGKITRLIKSGAVVMVD 474



 Score = 40.4 bits (93), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 130/302 (43%), Gaps = 48/302 (15%)

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE----GMVLTAYVK 241
           + +VG  V+  V+ +D +KK+I       SL L  L +     TV+E    G V+   VK
Sbjct: 238 VLNVGDKVTVKVIDVDPEKKKI-------SLSLKQLQED-PWNTVEEKYPVGSVVEGVVK 289

Query: 242 SIEDHGYILHFGLPSFTGFLP---------RNNLAENSGIDVKPGLLLQGVVRSIDRTRK 292
           SI   G+ +    P   G +          R +L E     ++ G  ++  ++ ID+ ++
Sbjct: 290 SIVPFGFFVMIE-PGVEGLVHISEVFWGNVRRDLKEL----IREGDRVKVKIKDIDKEKR 344

Query: 293 VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 352
            + LS       + +      I     V G +V  +V  +L  G ++    Y +G V + 
Sbjct: 345 TLSLS-----YREALGDPWDNIEEKYKV-GEIVDGKVVKVLPTGAIVELEEYVSGFVPVS 398

Query: 353 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVKV 407
            +   F     ++   +  +V  +IL +D  +R + L+L     +P+    +   + +KV
Sbjct: 399 EMSWNF-VDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQATEDPW----QKVHTELKV 453

Query: 408 GDIYDQSKVVR-VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           GD Y + K+ R +  G  +++D         A++  S VA + V  LE   K G   R +
Sbjct: 454 GD-YVEGKITRLIKSGAVVMVD----GYGVEAFLPASQVAMKRVENLEDAIKIGEHRRFK 508

Query: 467 IL 468
           I+
Sbjct: 509 II 510


>gi|257456491|ref|ZP_05621687.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC
           35580]
 gi|257446151|gb|EEV21198.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC
           35580]
          Length = 801

 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 169/404 (41%), Gaps = 52/404 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V+    
Sbjct: 432 GDVVKGAVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIDLKVI---- 486

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 614
            R+    K+  +  K      + E  D+     I  G +TKI   G FV    G++G   
Sbjct: 487 -RLDPAEKRINLSLKHFTPDPWLEFEDKFQVNDIVKGHVTKITDFGAFVELSEGIEGLVH 545

Query: 615 RSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGS 671
            SE   +    +PS M  +G  V+C I+     + R++L          +  D+   +G+
Sbjct: 546 ISEFSWVKKVSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWDNIDERYPVGT 605

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD---QLL 728
            ++  V V   NA     + +G   G +       H++  +  K V  P  E +   +L 
Sbjct: 606 RLTRKV-VKLTNAGAFIELEEGID-GFL-------HVDDLSWTKRVRHPNSELEVGQELE 656

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           V+  E +     A++ +    +QL  D     A    P S+V G V ++ + G FV+  G
Sbjct: 657 VIVIECN----PAEHRIRLGVKQLSDDPWKTFAEAYKPGSIVEGEVTSVTDFGIFVKVPG 712

Query: 784 RLTGFAPRSKAVDGQR---ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            + G   +   V+ +     ++ K Y VG  V++ +LDVN +  +   S++         
Sbjct: 713 GIEGLIHKQNLVENREDNPDEVLKKYAVGDKVKATVLDVNVKDKKTAFSIRD-------- 764

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
               +  L +E+++   S+K    E      F +G +++ K  E
Sbjct: 765 ---YKKRLQQEELSRYMSTKQEDGE----GAFTLGDLMKNKASE 801



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 1364 DTPGKHLEKI-EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1422
            DT  K+ E   E+ +   +V+G VK+ TS G FI L    D  + ++++S G+V  P+  
Sbjct: 416  DTVEKNREAFFENTNIGDVVKGAVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDF 474

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
               G+ +  +V+ ++P  KR+ ++LK        + E        V DIV G + ++  +
Sbjct: 475  VKKGQEIDLKVIRLDPAEKRINLSLKHFTPDPWLEFE----DKFQVNDIVKGHVTKITDF 530

Query: 1483 GLFITI 1488
            G F+ +
Sbjct: 531  GAFVEL 536



 Score = 40.4 bits (93), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG---KKFKVGAELVFRV 553
           KPG +V+G+V +V  FG  V+ PGG++ L    ++ E     P    KK+ VG ++   V
Sbjct: 689 KPGSIVEGEVTSVTDFGIFVKVPGGIEGLIHKQNLVENREDNPDEVLKKYAVGDKVKATV 748

Query: 554 L--GVKSKRITVT---HKKTLVKSKLA-ILSSYAEATDRLITHGWITK 595
           L   VK K+   +   +KK L + +L+  +S+  E  +   T G + K
Sbjct: 749 LDVNVKDKKTAFSIRDYKKRLQQEELSRYMSTKQEDGEGAFTLGDLMK 796


>gi|51244751|ref|YP_064635.1| 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
 gi|50875788|emb|CAG35628.1| probable 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
          Length = 570

 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 158/356 (44%), Gaps = 38/356 (10%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            S ++ G ++KG +  +  +G  +   GG+  LC +  +S   +  P K +KVG EL  +
Sbjct: 192 RSKLEEGQIIKGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHPAKLYKVGEELEVK 250

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH----GWITKIEKHGCFVRFYNG 608
           VL     +    H +  +  K      +A   DR        G +  I  +G FV    G
Sbjct: 251 VL-----KYDKEHDRVSLGVKQLRDDPWATVVDRYPVSQQATGKVVSITDYGVFVELEEG 305

Query: 609 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           V+G    SE+        PS M  VG  ++  +++    ++RI+L   MK  + +  DLV
Sbjct: 306 VEGLIHVSEMTWSKKPRHPSKMVAVGDEIEVMVLNIETETKRISLG--MKQLQPNPWDLV 363

Query: 668 K----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVI 718
                +GS++ G +  +T   V +     G  +G     H++D      ++H T   +  
Sbjct: 364 TENYPVGSIIEGKIKNITDFGVFI-----GIEEGIDGLIHVSDLSWTERIKHPTEKYA-- 416

Query: 719 KPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIET 775
               E  Q +VL  D E+    L  K  + +  Q+    A + +P+ +VV G + N+ + 
Sbjct: 417 --KGEMIQAVVLKIDKENERFSLGVKQLIPDPWQE----AYNNYPSGTVVEGEITNVTDF 470

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G FV+    + G    S+    +       Y VG ++++ +++V+++  +I LS+K
Sbjct: 471 GVFVKLEEGIEGLVHVSEISKDKIKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVK 526



 Score = 48.5 bits (114), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 80/413 (19%), Positives = 166/413 (40%), Gaps = 67/413 (16%)

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            +AI E E  +  R + +S  + G +++  IT I    L +  G G  G  HIT+++  + 
Sbjct: 177  RAILE-EARNKLREEMRSKLEEGQIIKGAITNITDYGLFIDMG-GMDGLCHITDLSWGRV 234

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
            +    L+   K+G+ +  +++    + D     + +L   P    V              
Sbjct: 235  SHPAKLY---KVGEELEVKVLKYDKEHDRVSLGVKQLRDDPWATVVDR-----------Y 280

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAV 1216
             + Q+ TG V  + +    + +   ++  + + +  +      PS++        +G  +
Sbjct: 281  PVSQQATGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSKM------VAVGDEI 334

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               VL+I  E K + L ++  Q        D+  +N       G I+ G+I  I     G
Sbjct: 335  EVMVLNIETETKRISLGMKQLQP----NPWDLVTENYPV----GSIIEGKIKNITDF--G 384

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            + + I   + G +H ++L           + E    P   Y +G+ ++  VL+I +    
Sbjct: 385  VFIGIEEGIDGLIHVSDL----------SWTERIKHPTEKYAKGEMIQAVVLKIDKE--- 431

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
                  + R SL G+              P    E   +     +V+G + NVT  G F+
Sbjct: 432  ------NERFSL-GVKQL----------IPDPWQEAYNNYPSGTVVEGEITNVTDFGVFV 474

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
             L   ++  V +S +S   +++P   + +G  +   V++V    +++ +++KT
Sbjct: 475  KLEEGIEGLVHVSEISKDKIKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVKT 527



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 138/336 (41%), Gaps = 68/336 (20%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            IG+++   VL  NK++  + +  R   +   +K      + M++ + EG I+ G I+ I 
Sbjct: 154  IGESLEFKVLKFNKKRNNVVISRRAILEEARNKL----REEMRSKLEEGQIIKGAITNIT 209

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FD----------- 1312
                GL + +G  + G  H T+L    VS P   Y  G+        +D           
Sbjct: 210  DY--GLFIDMG-GMDGLCHITDLSWGRVSHPAKLYKVGEELEVKVLKYDKEHDRVSLGVK 266

Query: 1313 --------------PLSGYDEGQFVKCK----VLEISRTVRGTFHV-ELSLRSSLDGMSS 1353
                          P+S    G+ V        +E+   V G  HV E++        S 
Sbjct: 267  QLRDDPWATVVDRYPVSQQATGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSK 326

Query: 1354 TNSSD-----LSTDVDTPGKHLE-KIEDLSPN------------MIVQGYVKNVTSKGCF 1395
              +       +  +++T  K +   ++ L PN             I++G +KN+T  G F
Sbjct: 327  MVAVGDEIEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVGSIIEGKIKNITDFGVF 386

Query: 1396 IMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            I +   +D  + +S+LS    ++ P +++  G+++   VL ++  ++R  + +K      
Sbjct: 387  IGIEEGIDGLIHVSDLSWTERIKHPTEKYAKGEMIQAVVLKIDKENERFSLGVKQLIPDP 446

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              ++     +N   G +V G+I  V  +G+F+ +E 
Sbjct: 447  WQEA----YNNYPSGTVVEGEITNVTDFGVFVKLEE 478


>gi|406893377|gb|EKD38457.1| hypothetical protein ACD_75C00728G0001 [uncultured bacterium]
          Length = 577

 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 168/392 (42%), Gaps = 40/392 (10%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            S ++ G +++G +  +  +G  +   GG+  LC +  +S   +  P K ++VG EL  +
Sbjct: 197 RSKLEEGQIIRGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHPAKLYRVGEELEVK 255

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           VL     +    H +  +  K      +A   +R      T G +  I  +G FV    G
Sbjct: 256 VL-----KYDRDHDRVSLGVKQLRDDPWATVVNRYPVGQTTKGKVVSITDYGVFVELEEG 310

Query: 609 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           V+G    SE+        PS M  VG  V+  +++    ++RI+L   MK  + +  DLV
Sbjct: 311 VEGLIHVSEMTWSKKPRHPSKMVSVGDEVEVMVLNIETETKRISLG--MKQLQPNPWDLV 368

Query: 668 K----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
                +GS++ G +  +T   V +     G  +G     H++D     +  + +  P  +
Sbjct: 369 TENYPVGSVIEGKIKNITDFGVFI-----GIEEGIDGLIHVSD----LSWTERIKHPSEK 419

Query: 724 FDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIET 775
           + +       +L +D E+    L  K  + +  Q     A + +P+ +VV G + N+ + 
Sbjct: 420 YTKGETIQAVVLKIDKENERFSLGIKQLVPDPWQA----AYNNYPSGTVVEGEITNVTDF 475

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G FV+    + G    S+    +       Y VG  +++ +++V+++  +I LS+K    
Sbjct: 476 GVFVKLEEGIEGLVHVSELSKDKVKTPVGMYQVGDVLKAIVINVSAKDRKIGLSVK--TL 533

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
              D     E F   EK+A   +    G  LK
Sbjct: 534 EGEDEGAAVEKFKKAEKLAAESAPSTFGDLLK 565



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 191/462 (41%), Gaps = 83/462 (17%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILS 578
           GV A  P   +     ++P K     +G  + F++L    KR        +V S+ AIL 
Sbjct: 137 GVPAFLPYSQID----LRPVKDLDALIGETMDFKILKFNKKR------NNVVISRRAILE 186

Query: 579 S-----YAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
                   E   +L    I  G IT I  +G F+    G+ G    ++L       P+ +
Sbjct: 187 EERNKLREEMRSKLEEGQIIRGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHPAKL 245

Query: 630 YHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 687
           Y VG+ ++ +++       R++L    +      +  +   +G    G V  +T   V V
Sbjct: 246 YRVGEELEVKVLKYDRDHDRVSLGVKQLRDDPWATVVNRYPVGQTTKGKVVSITDYGVFV 305

Query: 688 YVIAKGYSKGTIPTEHL--ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYS 744
             + +G  +G I    +  +    H + M SV   G E +  +L ++ E+  + L  K  
Sbjct: 306 E-LEEGV-EGLIHVSEMTWSKKPRHPSKMVSV---GDEVEVMVLNIETETKRISLGMK-- 358

Query: 745 LINSAQQLPSD-ASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-AD 801
                Q  P D  +  +P  SV+ G + NI + G F+     + G    S     +R   
Sbjct: 359 ---QLQPNPWDLVTENYPVGSVIEGKIKNITDFGVFIGIEEGIDGLIHVSDLSWTERIKH 415

Query: 802 LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
            S+ Y  G+++++ +L ++ E  R +L +KQ       A++                   
Sbjct: 416 PSEKYTKGETIQAVVLKIDKENERFSLGIKQLVPDPWQAAY------------------- 456

Query: 862 NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
                     +  G+V+EG++    DFGV V  EE   + G +   +L+   V++     
Sbjct: 457 --------NNYPSGTVVEGEITNVTDFGVFVKLEEG--IEGLVHVSELSKDKVKTPVGMY 506

Query: 917 --GSVIQAAILDVAKAERLVDLSLKTV-------FIDRFREA 949
             G V++A +++V+  +R + LS+KT+        +++F++A
Sbjct: 507 QVGDVLKAIVINVSAKDRKIGLSVKTLEGEDEGAAVEKFKKA 548



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 38/195 (19%)

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGR 825
           G V +I + G FV     + G    S+    ++    SK   VG  V   +L++ +ET R
Sbjct: 293 GKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSKMVSVGDEVEVMVLNIETETKR 352

Query: 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
           I+L +KQ   +  D                              E + +GSVIEGK+   
Sbjct: 353 ISLGMKQLQPNPWDLV---------------------------TENYPVGSVIEGKIKNI 385

Query: 886 NDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLS 937
            DFGV +  EE  D  G I    L+              G  IQA +L + K      L 
Sbjct: 386 TDFGVFIGIEEGID--GLIHVSDLSWTERIKHPSEKYTKGETIQAVVLKIDKENERFSLG 443

Query: 938 LKTVFIDRFREANSN 952
           +K +  D ++ A +N
Sbjct: 444 IKQLVPDPWQAAYNN 458



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 141/337 (41%), Gaps = 72/337 (21%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            IG+ +   +L  NK++  + +  R   +   +K      + M++ + EG I+ G I+ I 
Sbjct: 159  IGETMDFKILKFNKKRNNVVISRRAILEEERNKL----REEMRSKLEEGQIIRGAITNIT 214

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF-------------------- 1311
                GL + +G  + G  H T+L    VS P   Y  G+                     
Sbjct: 215  DY--GLFIDMG-GMDGLCHITDLSWGRVSHPAKLYRVGEELEVKVLKYDRDHDRVSLGVK 271

Query: 1312 ----DPLSG----YDEGQFVKCKVL---------EISRTVRGTFHV-ELSL----RSSLD 1349
                DP +     Y  GQ  K KV+         E+   V G  HV E++     R    
Sbjct: 272  QLRDDPWATVVNRYPVGQTTKGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSK 331

Query: 1350 GMSSTNSSDLST-DVDTPGKHLE-KIEDLSPN------------MIVQGYVKNVTSKGCF 1395
             +S  +  ++   +++T  K +   ++ L PN             +++G +KN+T  G F
Sbjct: 332  MVSVGDEVEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVGSVIEGKIKNITDFGVF 391

Query: 1396 IMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDS 1452
            I +   +D  + +S+LS    ++ P +++  G+ +   VL ++  ++R  + +K    D 
Sbjct: 392  IGIEEGIDGLIHVSDLSWTERIKHPSEKYTKGETIQAVVLKIDKENERFSLGIKQLVPDP 451

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              A+       +N   G +V G+I  V  +G+F+ +E
Sbjct: 452  WQAA------YNNYPSGTVVEGEITNVTDFGVFVKLE 482



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 80/413 (19%), Positives = 165/413 (39%), Gaps = 67/413 (16%)

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            +AI E E  +  R + +S  + G +++  IT I    L +  G G  G  HIT+++  + 
Sbjct: 182  RAILEEE-RNKLREEMRSKLEEGQIIRGAITNITDYGLFIDMG-GMDGLCHITDLSWGRV 239

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
            +    L+   ++G+ +  +++      D     + +L   P    V+             
Sbjct: 240  SHPAKLY---RVGEELEVKVLKYDRDHDRVSLGVKQLRDDPWATVVNR-----------Y 285

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAV 1216
             +GQ   G V  + +    + +   ++  + + +  +      PS++        +G  V
Sbjct: 286  PVGQTTKGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSKM------VSVGDEV 339

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               VL+I  E K + L ++  Q        D+  +N       G ++ G+I  I     G
Sbjct: 340  EVMVLNIETETKRISLGMKQLQP----NPWDLVTENYPV----GSVIEGKIKNITDF--G 389

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            + + I   + G +H ++L           + E    P   Y +G+ ++  VL+I +    
Sbjct: 390  VFIGIEEGIDGLIHVSDLS----------WTERIKHPSEKYTKGETIQAVVLKIDKE--- 436

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
                  + R SL G+              P        +     +V+G + NVT  G F+
Sbjct: 437  ------NERFSL-GIKQL----------VPDPWQAAYNNYPSGTVVEGEITNVTDFGVFV 479

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
             L   ++  V +S LS   V++P   + +G ++   V++V    +++ +++KT
Sbjct: 480  KLEEGIEGLVHVSELSKDKVKTPVGMYQVGDVLKAIVINVSAKDRKIGLSVKT 532


>gi|206890956|ref|YP_002249561.1| 30S ribosomal protein S1 [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742894|gb|ACI21951.1| 30S ribosomal protein S1 [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 534

 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 32/348 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL- 554
           +K G+ +KG V  + ++G  V   GG+     +  +S  ++  P + F++G+E  F VL 
Sbjct: 202 IKEGLKIKGTVKNITNYGVFVDL-GGLDGFLHISDISWGKVRHPSQFFEIGSEYEFIVLK 260

Query: 555 -GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +++RIT+ +K+        I   Y      +   G +T++E  G FV    GV+G  
Sbjct: 261 ADTENERITLGYKQKKADPWENIDKKYHPG---MKVRGKVTRVEDFGLFVELEEGVEGLV 317

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLG 670
             SEL       P+    V + +  +++     +R+I+LSF     KP  V      K+G
Sbjct: 318 HVSELDWIAPKHPTYYAEVDEWINVKVLDIDRENRKISLSFKQLKPKPWEVVAKKY-KVG 376

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFD 725
             +SG V  +T   + V +      +G     H++D     H++H +    + K G + D
Sbjct: 377 DRISGKVKTITDFGIFVRL-----PEGVDGLIHISDISWTKHIDHPS---QIFKKGQKVD 428

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L L+ E   L L  K   ++    +           + +  V    E G FV   G 
Sbjct: 429 AVILSLEPEKEKLSLGIKQ--LSEDPWIKEIPEKFKIGEIYNAKVIKKTEHGLFVDIEGI 486

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           + G    S+       D ++T   G  ++  ++ V+ E  +I LS+K+
Sbjct: 487 VEGLVYNSE------IDKNRTVKEGDEIKVIVVKVDKEKRKIGLSMKK 528



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 114/495 (23%), Positives = 197/495 (39%), Gaps = 86/495 (17%)

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI--VKPGK 541
           S +EG   + S ++ G ++KGK++ V + G IV      + + PL   SE E+  +K   
Sbjct: 13  SLYEG---SLSHIERGEIIKGKIMGVRNDGVIVDVGYKFEGIIPLNEFSEEELKNIKEAD 69

Query: 542 KFKVGAELVFRVLGVKSKRITVTHKKTL-VKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           + +V  E +    G+    I+++  + L +K    ++ +Y +A    +    IT   K G
Sbjct: 70  EIEVFIEKIDDAQGI----ISLSRDRALKIKGWEILMDAYEKALPVEVK---ITGKTKGG 122

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRI----------------MSS 643
               FY G+ GF P S L +    +P ++  +VG+  K +I                 +S
Sbjct: 123 VLTSFY-GINGFIPASLLEI---RKPKNLDEYVGKTFKVKIEKIEPPKNLYGQWRNLKTS 178

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
           +  SR+  L    +  +    + +K G  + G V  +T   V V +   G   G +   H
Sbjct: 179 LILSRKAYLQEEKEKMKKEISEKIKEGLKIKGTVKNITNYGVFVDL---GGLDGFL---H 232

Query: 704 LAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
           ++D     + H +     I   YEF  +L  D E+  + L  K    +  + +  D  + 
Sbjct: 233 ISDISWGKVRHPSQFFE-IGSEYEF-IVLKADTENERITLGYKQKKADPWENI--DKKY- 287

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY--VGQSVRSNIL 817
           HP   V G V  + + G FV     + G    S+      A    TYY  V + +   +L
Sbjct: 288 HPGMKVRGKVTRVEDFGLFVELEEGVEGLVHVSEL--DWIAPKHPTYYAEVDEWINVKVL 345

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
           D++ E  +I+LS KQ                L+ K   + + K+            +G  
Sbjct: 346 DIDRENRKISLSFKQ----------------LKPKPWEVVAKKYK-----------VGDR 378

Query: 878 IEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
           I GKV    DFG+ V   E      H     +  H        + G  + A IL +   +
Sbjct: 379 ISGKVKTITDFGIFVRLPEGVDGLIHISDISWTKHIDHPSQIFKKGQKVDAVILSLEPEK 438

Query: 932 RLVDLSLKTVFIDRF 946
             + L +K +  D +
Sbjct: 439 EKLSLGIKQLSEDPW 453



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            ++G VKN+T+ G F+ L   LD  + +S++S G V  P + F IG      VL  +  ++
Sbjct: 208  IKGTVKNITNYGVFVDLG-GLDGFLHISDISWGKVRHPSQFFEIGSEYEFIVLKADTENE 266

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+  TL     +      I+     H G  V G++ RVE +GLF+ +E
Sbjct: 267  RI--TLGYKQKKADPWENID--KKYHPGMKVRGKVTRVEDFGLFVELE 310



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 117/282 (41%), Gaps = 47/282 (16%)

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            F IG      VL  + E + + L       G   K  D   +N+    H G  V G++++
Sbjct: 248  FEIGSEYEFIVLKADTENERITL-------GYKQKKAD-PWENIDKKYHPGMKVRGKVTR 299

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE-GQFVKCKVL 1328
            +     GL V++   + G VH +EL  I    P            + Y E  +++  KVL
Sbjct: 300  VEDF--GLFVELEEGVEGLVHVSELDWIAPKHP------------TYYAEVDEWINVKVL 345

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
            +I R  R    + LS +                    P + + K   +     + G VK 
Sbjct: 346  DIDRENR---KISLSFKQLKP---------------KPWEVVAKKYKVGDR--ISGKVKT 385

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            +T  G F+ L   +D  + +S++S   +++ P + F  G+ V   +LS+EP  +++ + +
Sbjct: 386  ITDFGIFVRLPEGVDGLIHISDISWTKHIDHPSQIFKKGQKVDAVILSLEPEKEKLSLGI 445

Query: 1448 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            K   S      EI       +G+I   ++ +   +GLF+ IE
Sbjct: 446  KQL-SEDPWIKEIP--EKFKIGEIYNAKVIKKTEHGLFVDIE 484


>gi|417837661|ref|ZP_12483899.1| SSU ribosomal protein S1p [Lactobacillus johnsonii pf01]
 gi|338761204|gb|EGP12473.1| SSU ribosomal protein S1p [Lactobacillus johnsonii pf01]
          Length = 400

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   I KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHIDKPSD 239

Query: 542 KFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 595
             K G ++  +V+G+     RI+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDKHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 119/251 (47%), Gaps = 39/251 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEQEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            L+G G  V   G  + G VH +E+    +  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHIDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---KHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            S G FI ++  +   V +S +++ +V+ P     +G+ V  +VLSV+P  +R+ +++K +
Sbjct: 295  SFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354

Query: 1451 DSRTASQSEIN 1461
            D   A++SE N
Sbjct: 355  DP-NAAKSENN 364



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGNKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    + V     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHIDKPSDVLKAGQDVKVKVIGIDDDKHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 9/122 (7%)

Query: 1371 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +++ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHIDKPSDVLKAG 244

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDKHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1487 TI 1488
             +
Sbjct: 301  EV 302


>gi|268319594|ref|YP_003293250.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
 gi|262397969|emb|CAX66983.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
          Length = 400

 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   I KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHIDKPSD 239

Query: 542 KFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 595
             K G ++  +V+G+     RI+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDKHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 39/252 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEQEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            L+G G  V   G  + G VH +E+    +  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHIDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---KHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            S G FI ++  +   V +S +++ +V+ P     +G+ V  +VLSV+P  +R+ +++K +
Sbjct: 295  SFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354

Query: 1451 DSRTASQSEINN 1462
            D   A++SE N+
Sbjct: 355  DP-NAAKSENNS 365



 Score = 44.3 bits (103), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    + V     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHIDKPSDVLKAGQDVKVKVIGIDDDKHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 9/122 (7%)

Query: 1371 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +++ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHIDKPSDVLKAG 244

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDKHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1487 TI 1488
             +
Sbjct: 301  EV 302


>gi|403253622|ref|ZP_10919923.1| ribosomal protein S1 [Thermotoga sp. EMP]
 gi|418045501|ref|ZP_12683596.1| RNA binding S1 domain protein [Thermotoga maritima MSB8]
 gi|351676386|gb|EHA59539.1| RNA binding S1 domain protein [Thermotoga maritima MSB8]
 gi|402811156|gb|EJX25644.1| ribosomal protein S1 [Thermotoga sp. EMP]
          Length = 543

 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 169/409 (41%), Gaps = 25/409 (6%)

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           V E E+ K   +YK G  + ++IL   + E       +    + L     D +    VK 
Sbjct: 49  VPENELIKSLDEYKVGENLTLQILNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKA 108

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITV 563
           ++++    G  V   G V A  P  H +       P K+ +V   ++  +   +     V
Sbjct: 109 RIVSQTKGGYNVLLKGVVSAFLPGSHSLLRRNDPMPEKEIEV---IILEMAQTRRGPRIV 165

Query: 564 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 623
             ++ L   K+    S  +  D  I  G +  I   G  V    GV+GF PRSEL  D  
Sbjct: 166 VSRRALQDKKIEEFFSEKKVGD--IVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTR 223

Query: 624 CEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVV 680
             P  +   GQ +  +I+      + + LS    M  P    E+    +G +VSG V  +
Sbjct: 224 ISPEDIVKPGQNITAKIIELDKVKKNVILSLKKLMPDPWEKVEEKY-PVGKVVSGEVTSI 282

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLVLDNESS 735
            P     +V  +   +G +P   +        LE    +  ++K      +++ +D E+ 
Sbjct: 283 HPFGF--FVRLEPGVEGLVPRSEVFWGNARKSLEEVVSVGDLVKV-----EVINVDKENR 335

Query: 736 NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
            L LS + +  +  + +       + N+VV G V  II+ G FV     + GF P S+  
Sbjct: 336 KLTLSYRKAKGDPWENI---EDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEIS 392

Query: 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
             +  +  +   +G+ V+  IL ++ E  +ITLS+K++  +  + +  +
Sbjct: 393 WKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKE 441



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 122/518 (23%), Positives = 210/518 (40%), Gaps = 69/518 (13%)

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRS 286
           E  + G ++   V   ED G ++ FG  S  GF+P N L ++     V   L LQ  + +
Sbjct: 17  EEFRRGQIVKGVVIGKEDDGVVVDFGGKS-EGFVPENELIKSLDEYKVGENLTLQ--ILN 73

Query: 287 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV--QSILENGVMLSFLTY 344
           ++   + + LS     + K + +  K       V   +VS      ++L  GV+ +FL  
Sbjct: 74  LNYEERSI-LSERRPVLRKTLEELRKDYEEKKPVKARIVSQTKGGYNVLLKGVVSAFLP- 131

Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-- 402
             G+  +            +ND    K++   IL +  T R   + ++   L ++     
Sbjct: 132 --GSHSLLR----------RNDPMPEKEIEVIILEMAQTRRGPRIVVSRRALQDKKIEEF 179

Query: 403 -SHVKVGDIYD------QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
            S  KVGDI +       +  V V+   G+   IP + +S    ++  D+          
Sbjct: 180 FSEKKVGDIVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPEDIV--------- 230

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
             K G  +  +I+    ++      LK    +           G VV G+V ++  FG  
Sbjct: 231 --KPGQNITAKIIELDKVKKNVILSLKKLMPDPWEKVEEKYPVGKVVSGEVTSIHPFGFF 288

Query: 516 VQFPGGVKALCPLPHM-------SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
           V+   GV+ L P   +       S  E+V  G   KV       V+ V  +++++T++++
Sbjct: 289 VRLEPGVEGLVPRSEVFWGNARKSLEEVVSVGDLVKV------EVINVDKENRKLTLSYR 342

Query: 567 KTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
           K       A    +    DR     +  G +T I K G FV    GV+GF P SE+    
Sbjct: 343 K-------AKGDPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKR 395

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVSGVVDVV 680
             EP  +  +G+ VK +I+     +R+I LS         E  L  +K  S+VSG +  +
Sbjct: 396 IDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKELKPDSIVSGTIKKI 455

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 718
             N+ VV  + +   +G +P  HL    E    +  V+
Sbjct: 456 V-NSGVVVEVEEYDVEGFVPNNHLLSEPETGKALNLVV 492


>gi|116629547|ref|YP_814719.1| 30S ribosomal protein S1 [Lactobacillus gasseri ATCC 33323]
 gi|238852697|ref|ZP_04643107.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282852070|ref|ZP_06261428.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311110810|ref|ZP_07712207.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
 gi|420147301|ref|ZP_14654577.1| 30S ribosomal protein S1 [Lactobacillus gasseri CECT 5714]
 gi|116095129|gb|ABJ60281.1| SSU ribosomal protein S1P [Lactobacillus gasseri ATCC 33323]
 gi|238834843|gb|EEQ27070.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282556830|gb|EFB62434.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311065964|gb|EFQ46304.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
 gi|398401302|gb|EJN54804.1| 30S ribosomal protein S1 [Lactobacillus gasseri CECT 5714]
          Length = 399

 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   + KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHVDKPSD 239

Query: 542 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 595
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +   G FV   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 38/245 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + +K  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEKEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            L+G G  V   G  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHVDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            S G F+ ++  +   V +S +++ +V+ P     +G+ V  +VLSV+P  +R+ +++K +
Sbjct: 295  SFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354

Query: 1451 DSRTA 1455
            D   A
Sbjct: 355  DPNAA 359



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 649 RINLS---FMMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS    + K    + +++     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             ++ G V  +   G FV     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 9/122 (7%)

Query: 1371 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +V+ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAG 244

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G F+
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFV 300

Query: 1487 TI 1488
             +
Sbjct: 301  EV 302


>gi|220905593|ref|YP_002480905.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869892|gb|ACL50227.1| ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 570

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 149/352 (42%), Gaps = 34/352 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  V+GK   +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL 
Sbjct: 200 LEEGQTVEGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKEMITIGQELTLKVLS 258

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               + ++++  K+ +      I + + E        G +T +  +G FV    GV+G  
Sbjct: 259 FDRDNNKVSLGLKQLVPDPWQDISARFPEGAK---CSGKVTNLVDYGAFVELEPGVEGLV 315

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--- 669
             SE+        PS M H G  V+  I+      +RI+L   MK  R +  +LV     
Sbjct: 316 HISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKKRISLG--MKQVRPNPWELVAEKYP 373

Query: 670 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ GV+  +T   + +     G   G     H++D     +  K V  P   +    
Sbjct: 374 EGTILEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKVRHPNEMYKVGD 424

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D E+    L  K  + +    +PS     +P    V G V NI + G FV 
Sbjct: 425 TVQAKVLTVDQENEKFTLGVKQLVDDPWGHVPS----TYPVGCTVKGIVTNITDFGLFVE 480

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               + G    S+    +    ++ Y  GQ +++ ++ V++E  R+ LS+KQ
Sbjct: 481 VEEGIEGLVHVSELSSKKVKTPAEIYKEGQEIQAKVIHVSAEERRLGLSIKQ 532


>gi|395243557|ref|ZP_10420542.1| 30S ribosomal protein S1 [Lactobacillus hominis CRBIP 24.179]
 gi|394484177|emb|CCI81550.1| 30S ribosomal protein S1 [Lactobacillus hominis CRBIP 24.179]
          Length = 401

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 26/188 (13%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  V+GKV  +  FGA +   GGV  L  +  +S   I KP    KVG ++  +V+G+ +
Sbjct: 198 GDTVEGKVSRLTGFGAFIDV-GGVDGLVHISEISYKHIDKPSDVLKVGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+TL        S + EAT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTLP-------SPFEEATSSLTEGEVIEGEVKTLTSFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM------------KPTR 660
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS               +P R
Sbjct: 310 VHVSEISNKHVEKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKQADPSANNEESNARPRR 369

Query: 661 VSEDDLVK 668
             ED  VK
Sbjct: 370 RHEDSTVK 377



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 39/251 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + +K  + + +N+   +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEKEREEAFENVANQLVVGDTVEGKVSR- 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            L+G G  +   G  + G VH +E+    +  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFIDVGG--VDGLVHISEISYKHIDKP--------SDVLK---VGQDVKVKVIGI 254

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +L                 P    E    L+   +++G VK +T
Sbjct: 255  DND---RHRISLSIKQTL-----------------PSPFEEATSSLTEGEVIEGEVKTLT 294

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            S G F+ ++  +   V +S +S+ +VE P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 295  SFGAFVEVADGIQGLVHVSEISNKHVEKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKQA 354

Query: 1451 DSRTASQSEIN 1461
            D  +A+  E N
Sbjct: 355  DP-SANNEESN 364



 Score = 47.4 bits (111), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 130/318 (40%), Gaps = 34/318 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYTELEKVFEEGKTVEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 649 RINLS---FMMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS    + K    + +++     +G  V G V  +T     + V   G   G +   
Sbjct: 171 RLILSRKDLIEKEREEAFENVANQLVVGDTVEGKVSRLTGFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +L +  ++     S +  
Sbjct: 228 EIS--YKHIDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTLPSPFEEA---TSSLTE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V+ G V  +   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GEVIEGEVKTLTSFGAFVEVADGIQGLVHVSEISNKHVEKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLKQSCCSSTD 839
              RI+LS+KQ+  S+ +
Sbjct: 343 SDRRISLSIKQADPSANN 360


>gi|257094467|ref|YP_003168108.1| 30S ribosomal protein S1 [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046991|gb|ACV36179.1| ribosomal protein S1 [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 566

 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 157/364 (43%), Gaps = 28/364 (7%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+AS  E      + +K G +VKG V  +  +GA V   GG+  L  +  ++   +  P
Sbjct: 179 VLEASVGEERDALLAALKEGSIVKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHP 237

Query: 540 GKKFKVGAELVFRVLGVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            +   VG E+  ++L    ++  V+   K L +     +S     T RL   G +T +  
Sbjct: 238 SEVLAVGDEVQAKILKFDQEKNRVSLGLKQLGEDPWVGISRRYPPTTRLF--GKVTNLTD 295

Query: 599 HGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           +G FV    G++G    SE+   +    PS +  +G  V+  I+      RRI+L  M +
Sbjct: 296 YGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEDRRRISLG-MKQ 354

Query: 658 PTRVSEDDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
                 DD     K G  V G +  +T   V  ++   G   G +    L+  L     +
Sbjct: 355 CAANPWDDFSMNYKKGDRVRGAIKSITDFGV--FIGLPGGIDGLVHLSDLSWSLPGEEAI 412

Query: 715 KSVIKPGYEFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHG 767
           ++  K G E D + L +D +   + L  K        QL  D      A+H   NS+V G
Sbjct: 413 RN-FKKGDEVDAVVLAIDTDKERISLGIK--------QLDGDPYTSYIATH-DKNSIVRG 462

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            V ++   G  V   G +  +   S+    +  DL++ Y  G  + + I++++ +T  I+
Sbjct: 463 LVKSVDARGAVVMLDGDIEAYLRASEVSRDRIDDLTRVYKEGDQIEAMIINIDRKTRSIS 522

Query: 828 LSLK 831
           LS+K
Sbjct: 523 LSIK 526



 Score = 43.5 bits (101), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 151/365 (41%), Gaps = 42/365 (11%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG--AELV 550
             +++PG V+  +V+ +D    +V    G+K+   +  + EF   +   + KVG   ++ 
Sbjct: 21  RQEMRPGEVITAEVVRIDQNFVVVN--AGLKSESYI-ELEEFRNDQGELEVKVGDFVQVA 77

Query: 551 FRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYN 607
              L  G    R++    K     ++A  ++  +A  D  +  G IT   K G  V   N
Sbjct: 78  IEQLENGFGETRLSRDRAK-----RVAAWNALEQALNDGSLVVGTITGKVKGGLTV-MTN 131

Query: 608 GVQGFAPRSELGLDPGCEPS----SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
            V+ F P S + + P  + +      Y    +   R  +++  SRR  L   +   R + 
Sbjct: 132 SVRAFLPGSLVDMRPVKDTTPYEGKTYEFKVIKLDRKRNNVVVSRRAVLEASVGEERDAL 191

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 722
              +K GS+V GVV  +T     V +   G   G +    LA   + H +    V+  G 
Sbjct: 192 LAALKEGSIVKGVVKNITDYGAFVDL---GGIDGLLHITDLAWRRVRHPS---EVLAVGD 245

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETG 776
           E   ++L  D E + + L  K        QL  D     +    P + + G V N+ + G
Sbjct: 246 EVQAKILKFDQEKNRVSLGLK--------QLGEDPWVGISRRYPPTTRLFGKVTNLTDYG 297

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            FV     + G    S+ +D    ++  SK   +G  V   IL+++ +  RI+L +KQ  
Sbjct: 298 AFVEIEQGIEGLVHVSE-MDWTNKNVHPSKVVQLGDEVEVMILEIDEDRRRISLGMKQCA 356

Query: 835 CSSTD 839
            +  D
Sbjct: 357 ANPWD 361


>gi|42519016|ref|NP_964946.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|385826005|ref|YP_005862347.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
 gi|41583303|gb|AAS08912.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|329667449|gb|AEB93397.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
          Length = 400

 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   + KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHVDKPSD 239

Query: 542 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 595
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 56/284 (19%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEQEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            L+G G  V   G  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHVDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            S G FI ++  +   V +S +++ +V+ P     +G+ V  +VLSV+P  +R+ +++K +
Sbjct: 295  SFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354

Query: 1451 DSRTASQSEIN-----------------NLSNLHVGDIVIGQIK 1477
            D   A++SE N                 N +   +GDI+  Q+K
Sbjct: 355  DP-NAAKSENNSRPRRRQDSVADKYMNDNDNGFALGDIIGDQLK 397



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    + V     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 9/122 (7%)

Query: 1371 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +V+ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAG 244

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1487 TI 1488
             +
Sbjct: 301  EV 302


>gi|152990412|ref|YP_001356134.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
 gi|151422273|dbj|BAF69777.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
          Length = 558

 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 115/498 (23%), Positives = 205/498 (41%), Gaps = 89/498 (17%)

Query: 456 KYKEGSCVRVRILGFR-------HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
           KY+ G  ++V + G R       H + LA   +KA      +  H D   G++++G +  
Sbjct: 74  KYQPGDTIKVMVSGHRNERPVISHKKALAKEKVKA-----FIEQHKDDFDGLILEGVIKG 128

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
            +  G IV+   GV+    LP+   F   KP    ++G ++  +V+ +  ++  I ++ K
Sbjct: 129 KNRGGYIVENDEGVQFF--LPNSQSFFKNKP----EIGRKITAKVIKIDPENDSIVISRK 182

Query: 567 KTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
             L      I     E  ++L     I  G I KI  +G FV     V+G    +E+   
Sbjct: 183 AYL----QDIFKKREEIVNQLLNEGTIVEGTIKKITNYGMFVEVAPQVEGLVHYNEISYK 238

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVT 681
               P+  +  G  V  + +      RR+ LS  +K T+    + +K G L  G V  VT
Sbjct: 239 GPVNPAKYFQEGDKVNVKAIDFNKEKRRLLLS--IKATQPDPWEEIK-GELEPGDVINVT 295

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM---------KSVIKPGYEFD-QLLVLD 731
            + +  Y          +   +  + L H + M         K  ++ G + D +++ +D
Sbjct: 296 ISNIEPY-------GAFVDLGNDIEGLLHISEMSWDKRPKHPKEYVQEGQQLDVEVIEID 348

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            E+  L +S K  L    ++     S+     VV G V ++ + G FVR +G + G    
Sbjct: 349 AENRKLRVSLKNLLPKPFEEF---LSNYKEGDVVEGEVTSLTDFGAFVR-IGSVEGLLHN 404

Query: 792 SKAV--DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLL 849
                  GQ+A     + VG+ V   I  ++ +  +I+L  ++S   S    F +EH   
Sbjct: 405 QDISWEKGQKA--KDAFNVGEKVEVKIAKIDRDNEKISLD-RKSLLESPLEKFAKEH--- 458

Query: 850 EEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH--- 906
                                   +G +++G V +  +FGV V+ +E+ D  G I +   
Sbjct: 459 -----------------------KVGDIVKGTVKDIKEFGVFVALDENVD--GLIRNEDL 493

Query: 907 HQLAGATVESGSVIQAAI 924
           + L    ++SG  I+A I
Sbjct: 494 YPLKKEEIQSGDEIEAVI 511



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 175/402 (43%), Gaps = 30/402 (7%)

Query: 352 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIY 411
           F L N+   + +KN     +K+ A+++ +DP + ++ ++   YL         + V  + 
Sbjct: 144 FFLPNS--QSFFKNKPEIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKREEI-VNQLL 200

Query: 412 DQSKVV----RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
           ++  +V    +     G+ +++          V  ++++ +      K ++EG  V V+ 
Sbjct: 201 NEGTIVEGTIKKITNYGMFVEVAP---QVEGLVHYNEISYKGPVNPAKYFQEGDKVNVKA 257

Query: 468 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
           + F   +      +KA+  +       +++PG V+   +  ++ +GA V     ++ L  
Sbjct: 258 IDFNKEKRRLLLSIKATQPDPWEEIKGELEPGDVINVTISNIEPYGAFVDLGNDIEGLLH 317

Query: 528 LPHMSEFEIVKPGKKF-KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 584
           +  MS  +  K  K++ + G +L   V+ +  +++++ V+ K  L K     LS+Y E  
Sbjct: 318 ISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDAENRKLRVSLKNLLPKPFEEFLSNYKEGD 377

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
              +  G +T +   G FVR    V+G     ++  + G +    ++VG+ V+ +I    
Sbjct: 378 ---VVEGEVTSLTDFGAFVRI-GSVEGLLHNQDISWEKGQKAKDAFNVGEKVEVKIAKID 433

Query: 645 PASRRINL---SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
             + +I+L   S +  P      +  K+G +V G V  +      V+V       G I  
Sbjct: 434 RDNEKISLDRKSLLESPLEKFAKEH-KVGDIVKGTVKDIKEFG--VFVALDENVDGLIRN 490

Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAK 742
           E L        + K  I+ G E + ++  LD +++ L LS +
Sbjct: 491 EDL------YPLKKEEIQSGDEIEAVISHLDTKNNRLRLSVR 526



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 172/396 (43%), Gaps = 72/396 (18%)

Query: 1112 KIGQTVTARIIAKSNKPDM----KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
            +IG+ +TA++I    + D     +K++L ++  K       EI ++LL E      G  V
Sbjct: 158  EIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKRE-----EIVNQLLNE------GTIV 206

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYE-PSELQEFQRRFHIGKAVTGHVLSINKE 1226
             G + K+ N    + ++  ++  +   + +Y+ P    ++   F  G  V    +  NKE
Sbjct: 207  EGTIKKITNYGMFVEVAPQVEGLVHYNEISYKGPVNPAKY---FQEGDKVNVKAIDFNKE 263

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K+ L L ++  Q    D   +I  +     +  GD++   IS I     G  V +G  + 
Sbjct: 264  KRRLLLSIKATQ---PDPWEEIKGE-----LEPGDVINVTISNIEPY--GAFVDLGNDIE 313

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
            G +H +E+           +D+    P     EGQ +  +V+EI    R        LR 
Sbjct: 314  GLLHISEM----------SWDKRPKHPKEYVQEGQQLDVEVIEIDAENR-------KLRV 356

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1406
            SL  +              P    E + +     +V+G V ++T  G F+ +      + 
Sbjct: 357  SLKNL-------------LPKPFEEFLSNYKEGDVVEGEVTSLTDFGAFVRIGS---VEG 400

Query: 1407 LLSNLSDGYV--ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1464
            LL N    +   +  +  F +G+ V  ++  ++  ++++ +     D ++  +S +   +
Sbjct: 401  LLHNQDISWEKGQKAKDAFNVGEKVEVKIAKIDRDNEKISL-----DRKSLLESPLEKFA 455

Query: 1465 NLH-VGDIVIGQIKRVESYGLFITI-ENTN-LVRNK 1497
              H VGDIV G +K ++ +G+F+ + EN + L+RN+
Sbjct: 456  KEHKVGDIVKGTVKDIKEFGVFVALDENVDGLIRNE 491


>gi|300361576|ref|ZP_07057753.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
 gi|300354195|gb|EFJ70066.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
          Length = 398

 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   + KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHVDKPSD 239

Query: 542 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 595
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 52/281 (18%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + +K  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEKEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            L+G G  V   G  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHVDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            S G FI ++  +   V +S +++ +V+ P     +G+ V  +VLSV+P  +R+ +++K +
Sbjct: 295  SFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354

Query: 1451 D--------SRTASQSEI------NNLSNLHVGDIVIGQIK 1477
            D        SR   Q  +      +N +   +GDI+  Q+K
Sbjct: 355  DPNAAKSENSRPRRQDSVADKYMNDNDNGFALGDIIGDQLK 395



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 649 RINLS---FMMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS    + K    + +++     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 9/122 (7%)

Query: 1371 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +V+ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAG 244

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1487 TI 1488
             +
Sbjct: 301  EV 302


>gi|443468983|ref|ZP_21059180.1| SSU ribosomal protein S1p [Pseudomonas pseudoalcaligenes KF707]
 gi|442898255|gb|ELS25009.1| SSU ribosomal protein S1p [Pseudomonas pseudoalcaligenes KF707]
          Length = 559

 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 147/349 (42%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 189 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E T R++    +T +  +GCF     GV+G  
Sbjct: 248 FDRERNRVSLGLKQLGEDPWVAIKARYPEGT-RVVAR--VTNLTDYGCFAELEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--G 670
             SE+   +    PS +  VG  V+ +++      RRI+L      +   ED   +   G
Sbjct: 305 HVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSRFNKG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E +  +
Sbjct: 365 DKISGTIKSITDFGIFI-----GLEGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVI 419

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL  D     AS     S+V G+V  +   G  +   
Sbjct: 420 LSVDPERERISLGIK--------QLEDDPFSSYASMHEKGSIVRGFVKEVDAKGAVISLG 471

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G + G    S+    +  D       G  V + I+ ++ ++  I+LS+K
Sbjct: 472 GEIEGVLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSVK 520



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 4/173 (2%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFRVLGVK 557
           G  + G + ++  FG  +   GG+  L  L  +S  E+ +   ++FK G EL   +L V 
Sbjct: 364 GDKISGTIKSITDFGIFIGLEGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVD 423

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            +R  ++     ++      SSYA   ++  I  G++ +++  G  +     ++G    S
Sbjct: 424 PERERISLGIKQLEDDP--FSSYASMHEKGSIVRGFVKEVDAKGAVISLGGEIEGVLKAS 481

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
           E+  D   +  ++   G  V+ +I+S    SR I+LS   K     +D + +L
Sbjct: 482 EISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKEL 534



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 171/415 (41%), Gaps = 61/415 (14%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D++PG ++ G V+ +D  G  V    G+K+   +P + +F   +     KVG E+   + 
Sbjct: 17  DMQPGAIITGIVVDID--GDWVTVHAGLKSEGVIP-VEQFYNEQGELTIKVGDEVHVALD 73

Query: 555 GVKS---KRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            V+    +      K    +S L + +++ AE   + + +G +      G F    +G++
Sbjct: 74  AVEDGFGETKLSREKAKRAESWLVLEAAFNAEEVVKGVINGKV-----KGGFTVDVSGIR 128

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            F P S + + P  + + +   G+ ++ +++      +++  SRR  L       R +  
Sbjct: 129 AFLPGSLVDVRPVRDTTHLE--GKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALL 186

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
           + ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E
Sbjct: 187 ESLQEGQQVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRIKHPS---EIVNVGDE 240

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            D ++L  D E + + L  K   +     +   A +     VV   V N+ + GCF    
Sbjct: 241 IDVKVLKFDRERNRVSLGLKQ--LGEDPWVAIKARYPEGTRVV-ARVTNLTDYGCFAELE 297

Query: 783 GRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
             + G    S+ +D    ++  SK   VG  V   +LD++ E  RI+L +KQ C S+   
Sbjct: 298 EGVEGLVHVSE-MDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQ-CKSNPWE 355

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
            F               SS+ N            G  I G +    DFG+ +  E
Sbjct: 356 DF---------------SSRFNK-----------GDKISGTIKSITDFGIFIGLE 384


>gi|298529708|ref|ZP_07017111.1| ribosomal protein S1 [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511144|gb|EFI35047.1| ribosomal protein S1 [Desulfonatronospira thiodismutans ASO3-1]
          Length = 582

 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 151/365 (41%), Gaps = 60/365 (16%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G VV+GKV  +  +G  +   GG+  L  +  MS   I  P +  ++G +L  +VLG
Sbjct: 206 IKEGQVVQGKVKNITEYGVFIDL-GGLDGLLHITDMSWKRIRHPKEMVQLGDDLELKVLG 264

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
             S  K++++  K+ +      I   Y E T R+   G +T +  +G FV   +GV+G  
Sbjct: 265 FDSEEKKVSLGLKQLVSDPWENIGEKYPEGT-RMT--GKVTNLADYGAFVELDDGVEGLV 321

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
             SE+        PS +   G  V+  ++      +RI+L                    
Sbjct: 322 HISEMSWTRKLRHPSQLVKSGDEVEVVVLGIDSDRKRISLGMKQ---------------- 365

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTI---PTEHLAD---------------HLEHATVM 714
                  V+PN     V+A+ Y +GTI   P +++ +               H+   +  
Sbjct: 366 -------VSPNPW--DVVAEKYPEGTILEAPVKNITEFGLFIGIEDGIDGLIHVSDMSWT 416

Query: 715 KSVIKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 767
           K V  P   F        ++L +D E+    L  K    +   ++P    H    + V G
Sbjct: 417 KKVRHPSELFKNGDMVRAKVLTVDKENEKFTLGIKQLTEDPWAEVPR---HYPVGTTVTG 473

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            + NI + G FV     + G    S+    +  +  + +  GQ +++ ++ V+++  R+ 
Sbjct: 474 KITNITDFGLFVEVEEGIEGLVHVSEMSRKKIKNPKEFFSEGQEIQAKVIHVSADERRLG 533

Query: 828 LSLKQ 832
           LS+KQ
Sbjct: 534 LSIKQ 538



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 121/563 (21%), Positives = 213/563 (37%), Gaps = 87/563 (15%)

Query: 578  SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
            + + E  +  I  G + K+EK    V      +G  P SE       E +     G  V 
Sbjct: 30   ADFGEVQEGSIVTGEVVKVEKDYVLVDVNFKSEGQIPVSEF---QDAEGNLTVQEGDKVD 86

Query: 638  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVD-VVTPNAVVVYVIAKGYS- 695
              +         I+LS   K  RV      KL   +  ++D   T    +V  I  GY+ 
Sbjct: 87   VFVTQKDENEGAISLS-REKARRV------KLLDDLQDIMDNQTTIQGKIVKRIKGGYNV 139

Query: 696  -----KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSA 749
                 +  +P  H+   L     M +++  G E D ++L ++   SN+++S +  L    
Sbjct: 140  DLEGLEAFLPGSHV--DLRPVPDMDALV--GQEMDFRILKINRRRSNVIISRRVLLEEER 195

Query: 750  QQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
            + +  +    I    VV G V NI E G F+  LG L G    +     +     +   +
Sbjct: 196  ENMRQELLDTIKEGQVVQGKVKNITEYGVFID-LGGLDGLLHITDMSWKRIRHPKEMVQL 254

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
            G  +   +L  +SE  +++L LKQ                  E I               
Sbjct: 255  GDDLELKVLGFDSEEKKVSLGLKQLVSDPW------------ENIG-------------- 288

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQA 922
             E +  G+ + GKV    D+G  V  ++      H     +    +     V+SG  ++ 
Sbjct: 289  -EKYPEGTRMTGKVTNLADYGAFVELDDGVEGLVHISEMSWTRKLRHPSQLVKSGDEVEV 347

Query: 923  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
             +L +    + + L +K V        + N      ++  E +        + A V+ + 
Sbjct: 348  VVLGIDSDRKRISLGMKQV--------SPNPWDVVAEKYPEGT-------ILEAPVKNIT 392

Query: 983  ENYLVLSLPEYNHSIGYASVSDYNTQK---FPQKQFLNGQSVIATVMALPSSSTAGRLLL 1039
            E  L + +   +   G   VSD +  K    P + F NG  V A V+ +   +   +  L
Sbjct: 393  EFGLFIGIE--DGIDGLIHVSDMSWTKKVRHPSELFKNGDMVRAKVLTVDKENE--KFTL 448

Query: 1040 LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 1099
             +K ++E   +   R      Y VG+ V  +IT I    L ++   G  G +H++E++  
Sbjct: 449  GIKQLTEDPWAEVPR-----HYPVGTTVTGKITNITDFGLFVEVEEGIEGLVHVSEMSRK 503

Query: 1100 KSNVVENLFSNFKIGQTVTARII 1122
            K   ++N    F  GQ + A++I
Sbjct: 504  K---IKNPKEFFSEGQEIQAKVI 523



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 166/429 (38%), Gaps = 61/429 (14%)

Query: 254 LPSFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
           L     FLP       S +D++P        G  +   +  I+R R  V +S     + +
Sbjct: 141 LEGLEAFLP------GSHVDLRPVPDMDALVGQEMDFRILKINRRRSNVIISRR--VLLE 192

Query: 306 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWK 364
              ++++   +D +  G +V  +V++I E GV +       G +D + H+ +     +WK
Sbjct: 193 EERENMRQELLDTIKEGQVVQGKVKNITEYGVFIDL-----GGLDGLLHITDM----SWK 243

Query: 365 NDYNQHKKVNA------RILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGD 409
              +  + V        ++L  D   + V L L     +P+       P       KV +
Sbjct: 244 RIRHPKEMVQLGDDLELKVLGFDSEEKKVSLGLKQLVSDPWENIGEKYPEGTRMTGKVTN 303

Query: 410 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + D    V +D G+  L+ I     +             ++R   +  K G  V V +LG
Sbjct: 304 LADYGAFVELDDGVEGLVHISEMSWT------------RKLRHPSQLVKSGDEVEVVVLG 351

Query: 470 F-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
                + ++ G+ + S     V        G +++  V  +  FG  +    G+  L  +
Sbjct: 352 IDSDRKRISLGMKQVSPNPWDVVAEK-YPEGTILEAPVKNITEFGLFIGIEDGIDGLIHV 410

Query: 529 PHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
             MS  + V+ P + FK G  +  +VL V  ++++ T+  K+        +   Y   T 
Sbjct: 411 SDMSWTKKVRHPSELFKNGDMVRAKVLTVDKENEKFTLGIKQLTEDPWAEVPRHYPVGT- 469

Query: 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
                G IT I   G FV    G++G    SE+       P   +  GQ ++ +++    
Sbjct: 470 --TVTGKITNITDFGLFVEVEEGIEGLVHVSEMSRKKIKNPKEFFSEGQEIQAKVIHVSA 527

Query: 646 ASRRINLSF 654
             RR+ LS 
Sbjct: 528 DERRLGLSI 536



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 140/343 (40%), Gaps = 84/343 (24%)

Query: 1212 IGKAVTGHVLSINKEKKLL----RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            +G+ +   +L IN+ +  +    R++L   ++ +  + +D         I EG +V G++
Sbjct: 165  VGQEMDFRILKINRRRSNVIISRRVLLEEERENMRQELLDT--------IKEGQVVQGKV 216

Query: 1268 SKI--------LSGVGGL----------------VVQIGPHLYGRV--HFTELKNIC--- 1298
              I        L G+ GL                +VQ+G  L  +V    +E K +    
Sbjct: 217  KNITEYGVFIDLGGLDGLLHITDMSWKRIRHPKEMVQLGDDLELKVLGFDSEEKKVSLGL 276

Query: 1299 ---VSDPLSGYDE---------GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV-ELSLR 1345
               VSDP     E         G+   L+ Y  G FV     E+   V G  H+ E+S  
Sbjct: 277  KQLVSDPWENIGEKYPEGTRMTGKVTNLADY--GAFV-----ELDDGVEGLVHISEMSWT 329

Query: 1346 SSLDGMSSTNSSDLSTDV-----DTPGKHLE-KIEDLSPN------------MIVQGYVK 1387
              L   S    S    +V     D+  K +   ++ +SPN             I++  VK
Sbjct: 330  RKLRHPSQLVKSGDEVEVVVLGIDSDRKRISLGMKQVSPNPWDVVAEKYPEGTILEAPVK 389

Query: 1388 NVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
            N+T  G FI +   +D  + +S++S    V  P + F  G +V  +VL+V+  +++  + 
Sbjct: 390  NITEFGLFIGIEDGIDGLIHVSDMSWTKKVRHPSELFKNGDMVRAKVLTVDKENEKFTLG 449

Query: 1447 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +K       ++       +  VG  V G+I  +  +GLF+ +E
Sbjct: 450  IKQLTEDPWAEVP----RHYPVGTTVTGKITNITDFGLFVEVE 488



 Score = 40.0 bits (92), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 149/358 (41%), Gaps = 35/358 (9%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L+T++EG V+   VK+I ++G  +  G     G L   +++     +    V+ G  L+ 
Sbjct: 203 LDTIKEGQVVQGKVKNITEYGVFIDLG--GLDGLLHITDMSWKRIRHPKEMVQLGDDLEL 260

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            V   D   K V L      + + V+   + I  +    G  ++ +V ++ + G  +   
Sbjct: 261 KVLGFDSEEKKVSLG-----LKQLVSDPWENIG-EKYPEGTRMTGKVTNLADYGAFVELD 314

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LL 396
               G V I  +  T    +         +V   +L +D   + + L +     NP+ ++
Sbjct: 315 DGVEGLVHISEMSWTRKLRHPSQLVKSGDEVEVVVLGIDSDRKRISLGMKQVSPNPWDVV 374

Query: 397 HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEK 455
             + P   +    + + ++        GL + I          + +SD++  ++VR   +
Sbjct: 375 AEKYPEGTILEAPVKNITE-------FGLFIGIED---GIDGLIHVSDMSWTKKVRHPSE 424

Query: 456 KYKEGSCVRVRILGF-RHLEGLATGILKASAFE-GLVFTHSDVKPGMVVKGKVIAVDSFG 513
            +K G  VR ++L   +  E    GI + +      V  H  V  G  V GK+  +  FG
Sbjct: 425 LFKNGDMVRAKVLTVDKENEKFTLGIKQLTEDPWAEVPRHYPV--GTTVTGKITNITDFG 482

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTL 569
             V+   G++ L  +  MS  +I  P + F  G E+  +V+ V +  +R+ ++ K+ L
Sbjct: 483 LFVEVEEGIEGLVHVSEMSRKKIKNPKEFFSEGQEIQAKVIHVSADERRLGLSIKQHL 540


>gi|374299924|ref|YP_005051563.1| 30S ribosomal protein S1 [Desulfovibrio africanus str. Walvis Bay]
 gi|332552860|gb|EGJ49904.1| ribosomal protein S1 [Desulfovibrio africanus str. Walvis Bay]
          Length = 590

 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 150/349 (42%), Gaps = 34/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G VV GKV  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 215 GQVVTGKVKNITEYGVFVDL-GGLDGLLHITDMSWRRIRHPKEMVGLGDELELKVLSFDK 273

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            +K++++  K+ +      I   Y E   RL   G +T +  +G FV    GV+G    S
Sbjct: 274 DNKKVSLGLKQLVPDPWEDITKKYPEGA-RL--KGRVTNLVDYGSFVELEPGVEGLVHIS 330

Query: 617 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 671
           E+        PS M H G  V+  ++   P  +RI+L   MK  + +  DLV      G+
Sbjct: 331 EMSWTRKLRHPSQMVHPGDEVEVVVLGVDPDKKRISLG--MKQIKPNPWDLVAEKYPEGT 388

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 725
           ++ G +  +T   + +     G   G     H++D     +  K +  PG  +       
Sbjct: 389 ILEGTIKNITEFGLFI-----GIEDGIDGLIHVSD----ISWTKKIRHPGEMYKVSDTVQ 439

Query: 726 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 783
            ++L +D E+    L  K    +   ++P      +P  + V G V NI + G FV    
Sbjct: 440 AKVLTVDKENEKFTLGVKQLNEDPWNEVPGK----YPVGATVKGIVTNITDFGLFVEVEE 495

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            + G    S+    +  + ++ +  G  + + ++ V+++  R+ LS+KQ
Sbjct: 496 GIEGLVHVSEISHKKVKNPAELFKEGVEIEAKVIHVSADERRLGLSIKQ 544



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 152/373 (40%), Gaps = 56/373 (15%)

Query: 210 RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 269
           R++ L  +   + K L LET+ EG V+T  VK+I ++G  +  G     G L   +++  
Sbjct: 193 RRVLLEEQREHMRKEL-LETLSEGQVVTGKVKNITEYGVFVDLG--GLDGLLHITDMS-- 247

Query: 270 SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL--LVP------ 321
                          R I   +++V L  + +       KD K +S+ L  LVP      
Sbjct: 248 --------------WRRIRHPKEMVGLGDELELKVLSFDKDNKKVSLGLKQLVPDPWEDI 293

Query: 322 ------GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
                 G  +  RV ++++ G  +       G V I  +  T    +     +   +V  
Sbjct: 294 TKKYPEGARLKGRVTNLVDYGSFVELEPGVEGLVHISEMSWTRKLRHPSQMVHPGDEVEV 353

Query: 376 RILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
            +L VDP  + + L +     NP+ L+  + P   +  G I + ++        GL + I
Sbjct: 354 VVLGVDPDKKRISLGMKQIKPNPWDLVAEKYPEGTILEGTIKNITE-------FGLFIGI 406

Query: 430 PSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASA 485
                     + +SD++  +++R   + YK    V+ ++L   +  E    G+  L    
Sbjct: 407 ED---GIDGLIHVSDISWTKKIRHPGEMYKVSDTVQAKVLTVDKENEKFTLGVKQLNEDP 463

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 545
           +  +   +     G  VKG V  +  FG  V+   G++ L  +  +S  ++  P + FK 
Sbjct: 464 WNEVPGKYP---VGATVKGIVTNITDFGLFVEVEEGIEGLVHVSEISHKKVKNPAELFKE 520

Query: 546 GAELVFRVLGVKS 558
           G E+  +V+ V +
Sbjct: 521 GVEIEAKVIHVSA 533



 Score = 47.0 bits (110), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 122/569 (21%), Positives = 226/569 (39%), Gaps = 84/569 (14%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL-VFRVL 554
            ++ G +V G+V+ +D+   +V      K+   LP + EF         KVG ++ VF V 
Sbjct: 41   IEDGNIVSGEVVKIDTDHVLVDV--NFKSEGQLP-IGEFTDSNGNVTVKVGDKVDVFVVR 97

Query: 555  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
              + +   V  ++   + KL       +  D+ I+ G I +  K G  V    GV+ F P
Sbjct: 98   KDEVEGTIVLSRERAQRMKLFDKLEDVQEGDKTIS-GRIMRRVKGGYTVDL-GGVEAFLP 155

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             S + L P  +  ++  VG+  + R++      S++  SRR+ L    +  R    + + 
Sbjct: 156  GSHVDLRPVPDMDAL--VGKDYEFRVLKINRRRSNVIVSRRVLLEEQREHMRKELLETLS 213

Query: 669  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEF 724
             G +V+G V  +T   V V +   G   G +   H+ D     + H    K ++  G E 
Sbjct: 214  EGQVVTGKVKNITEYGVFVDL---GGLDGLL---HITDMSWRRIRHP---KEMVGLGDEL 264

Query: 725  D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV-VHGYVCNIIETGCFVRFL 782
            + ++L  D ++  + L  K  + +  +    D +  +P    + G V N+++ G FV   
Sbjct: 265  ELKVLSFDKDNKKVSLGLKQLVPDPWE----DITKKYPEGARLKGRVTNLVDYGSFVELE 320

Query: 783  GRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              + G    S+    ++    S+  + G  V   +L V+ +  RI+L +KQ   +  D  
Sbjct: 321  PGVEGLVHISEMSWTRKLRHPSQMVHPGDEVEVVVLGVDPDKKRISLGMKQIKPNPWD-- 378

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE----- 896
                  L+ EK                   +  G+++EG +    +FG+ +  E+     
Sbjct: 379  ------LVAEK-------------------YPEGTILEGTIKNITEFGLFIGIEDGIDGL 413

Query: 897  -HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
             H     +    +  G   +    +QA +L V K      L +K +  D + E       
Sbjct: 414  IHVSDISWTKKIRHPGEMYKVSDTVQAKVLTVDKENEKFTLGVKQLNEDPWNEVPGKYP- 472

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQF 1015
                          V  TV  IV  + +  L + + E    + + S   +   K P + F
Sbjct: 473  --------------VGATVKGIVTNITDFGLFVEVEEGIEGLVHVSEISHKKVKNPAELF 518

Query: 1016 LNGQSVIATVMALPSSSTAGRLLLLLKAI 1044
              G  + A V+ +  S+   RL L +K +
Sbjct: 519  KEGVEIEAKVIHV--SADERRLGLSIKQL 545


>gi|376297312|ref|YP_005168542.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans ND132]
 gi|323459874|gb|EGB15739.1| ribosomal protein S1 [Desulfovibrio desulfuricans ND132]
          Length = 614

 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 155/352 (44%), Gaps = 32/352 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VV+GKV  +  +G  +   GG+  L  +  MS   I  P +   +G +L  ++L 
Sbjct: 203 LEEGQVVQGKVKNITEYGVFIDL-GGLDGLLHITDMSWKRIKHPKEMVSLGDDLELKILN 261

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +++++  K+ +      I   Y E + R    G IT +  +G FV   NGV+G  
Sbjct: 262 FDREGQKVSLGLKQLVPDPWENIAEKYPEGS-RFT--GVITNLADYGAFVELENGVEGLV 318

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK---- 668
             SE+        PS M  VG+ V   ++   P  +RI+L   MK    +  D+V     
Sbjct: 319 HISEMSWTRKLRHPSQMVKVGEEVDVVVLGVDPDKKRISLG--MKQISPNPWDVVAEKYP 376

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYE 723
            G+++ G +  +T   V +     G  +G     H++D      + H +    V K G  
Sbjct: 377 EGTVLEGAIKNITEFGVFI-----GIEEGIDGLIHVSDISWTKKIRHPS---EVYKVGDS 428

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRF 781
              ++L +D E+    L  K    +   Q+P+     +P    V G V NI + G FV  
Sbjct: 429 VQAKVLTVDKENEKFTLGVKQLTEDPWTQVPAK----YPVGQKVTGTVTNITDFGLFVEV 484

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
              + G    S+    +    S+ +  G ++ + ++ V+++  R+ LS+KQ+
Sbjct: 485 EEGIEGLVHVSEISRKKIKSPSEMFKEGDTIEAKVIHVSADERRLGLSIKQT 536



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            +++G +KN+T  G FI +   +D  + +S++S    +  P + + +G  V  +VL+V+  
Sbjct: 380  VLEGAIKNITEFGVFIGIEEGIDGLIHVSDISWTKKIRHPSEVYKVGDSVQAKVLTVDKE 439

Query: 1440 SKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +++  + +K  T D  T   ++        VG  V G +  +  +GLF+ +E
Sbjct: 440  NEKFTLGVKQLTEDPWTQVPAK------YPVGQKVTGTVTNITDFGLFVEVE 485



 Score = 40.4 bits (93), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            GK LE +E+     +VQG VKN+T  G FI L   LD  + ++++S   ++ P++   +G
Sbjct: 197  GKLLETLEE---GQVVQGKVKNITEYGVFIDLG-GLDGLLHITDMSWKRIKHPKEMVSLG 252

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
              +  ++L+ +   ++V + LK    +       N       G    G I  +  YG F+
Sbjct: 253  DDLELKILNFDREGQKVSLGLK----QLVPDPWENIAEKYPEGSRFTGVITNLADYGAFV 308

Query: 1487 TIEN 1490
             +EN
Sbjct: 309  ELEN 312


>gi|294140845|ref|YP_003556823.1| 30S ribosomal protein S1 [Shewanella violacea DSS12]
 gi|293327314|dbj|BAJ02045.1| ribosomal protein S1 [Shewanella violacea DSS12]
          Length = 555

 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 151/347 (43%), Gaps = 24/347 (6%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  +KG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQAIKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIDVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E T RL   G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENT-RLT--GRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVKL- 669
              SE+   +    PS + ++G  V+  ++      RRI+L   +K  +V+  DD  +  
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLG--LKQCKVNPWDDFAERF 361

Query: 670 --GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI--KPGYEFD 725
             G  V+G +  +T   + +     G   G     HL+D   + T  ++V   K G E +
Sbjct: 362 NKGDKVTGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEEAVADYKKGDEIN 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K +  +      +D       +VVHG V  +   G  +     
Sbjct: 417 AVVLSVDPERERISLGVKQTEDDPFNAYLADKKK---GAVVHGTVVAVDAKGVTIELAET 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   S     +  D S  Y VG +V S  + V+ +   I+LS++
Sbjct: 474 VEGYLRVSDISRERIEDASTVYSVGDAVESKFMGVDRKNRTISLSIR 520



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK----FKVGAELVFRVL 554
           G  V GK+ ++  FG  +   GG+  L    H+S+      G++    +K G E+   VL
Sbjct: 364 GDKVTGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNGTGEEAVADYKKGDEINAVVL 420

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  + +RI++  K+T      A L+   +     + HG +  ++  G  +     V+G+
Sbjct: 421 SVDPERERISLGVKQTEDDPFNAYLADKKKGA---VVHGTVVAVDAKGVTIELAETVEGY 477

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
              S++  +   + S++Y VG  V+ + M     +R I+LS   K
Sbjct: 478 LRVSDISRERIEDASTVYSVGDAVESKFMGVDRKNRTISLSIRAK 522



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 128/597 (21%), Positives = 232/597 (38%), Gaps = 90/597 (15%)

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            +PG +V G V+ +++   +V    G+K+  P+P   +F+  +   +  VG  +   +  V
Sbjct: 19   RPGSIVTGVVVRIENGTVLVD--AGLKSESPIP-AEQFKNAQGELEVSVGDTVHVALDSV 75

Query: 557  KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            +       ++ +K        +L    E  + +I  G I    K G  V   NG++ F P
Sbjct: 76   EDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI--GVINGKVKGGFTVEL-NGIRAFLP 132

Query: 615  RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
             S + + P  + + + +     +V+K  +  +++  SRR  +       R +  + ++ G
Sbjct: 133  GSLVDVRPVRDTAHLENKDLEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEG 192

Query: 671  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
              + G+V  +T     V +   G   G +    +A   ++H +    ++  G E D ++L
Sbjct: 193  QAIKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEIDVKVL 246

Query: 729  VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNIIETGCFVRFLG 783
              D E + + L  K        QL  D     S  +P N+ + G V N+ + GCFV    
Sbjct: 247  KYDRERTRVSLGLK--------QLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIEE 298

Query: 784  RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ   +  D  
Sbjct: 299  GVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWD-- 355

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                                      + E F  G  + GK+    DFG+ +  +   D  
Sbjct: 356  -------------------------DFAERFNKGDKVTGKIKSITDFGIFIGLDGGIDGL 390

Query: 902  GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
              ++     G   E+      G  I A +L V      + L +K    D F    ++++ 
Sbjct: 391  VHLSDISWNGTGEEAVADYKKGDEINAVVLSVDPERERISLGVKQTEDDPFNAYLADKK- 449

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ- 1014
                      K   VH TV A    V    + + L E     GY  VSD + ++      
Sbjct: 450  ----------KGAVVHGTVVA----VDAKGVTIELAETVE--GYLRVSDISRERIEDAST 493

Query: 1015 -FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
             +  G +V +  M +   +    + L ++A  E E   +  +  K    V S   AE
Sbjct: 494  VYSVGDAVESKFMGVDRKNRT--ISLSIRAKDEAEEKEAMASLNKQEDAVMSSAMAE 548



 Score = 40.4 bits (93), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 137/366 (37%), Gaps = 63/366 (17%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE +QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 186 LENLQEGQAIKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEIDV 243

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPD-TVSKCVTKDLKGISIDLLVPGMMVSTR 328
           K        V   DR R  V      L  DP   +SK   ++ +            ++ R
Sbjct: 244 K--------VLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTR------------LTGR 283

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G  +       G V +  +  T    +     N   +V   +L +D   R + 
Sbjct: 284 VTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRIS 343

Query: 389 LTL-----NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L L     NP+       N+      K+  I D    + +D G+  L+ +     +    
Sbjct: 344 LGLKQCKVNPWDDFAERFNKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGE 403

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKP 498
             ++D            YK+G  +   +L      E ++ G+ K +  +      +D K 
Sbjct: 404 EAVAD------------YKKGDEINAVVLSVDPERERISLGV-KQTEDDPFNAYLADKKK 450

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV G V+AVD+ G  ++    V+    +  +S   I      + VG  +  + +GV  
Sbjct: 451 GAVVHGTVVAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVGDAVESKFMGVDR 510

Query: 559 KRITVT 564
           K  T++
Sbjct: 511 KNRTIS 516


>gi|405983923|ref|ZP_11042228.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
 gi|404388738|gb|EJZ83820.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
          Length = 396

 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +  GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLAKGMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V  + +RI++  K+T     L ++ SY   +   I  G +TKI   G F+   N V+G
Sbjct: 261 LDVDLQRERISLGLKQTTEDPWLKLVESYPVGS---IVDGKVTKIVPFGAFIELGNNVEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+       P+ +  VGQ VK ++M   P  RRI+LS 
Sbjct: 318 LVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSM 360



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 148/365 (40%), Gaps = 50/365 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + K+E     +      +G  P  EL +    +PS +  +G  ++  ++      
Sbjct: 36  LVKGTVVKLEHDEVLLDIGFKSEGVIPSRELSIRKDADPSDIVALGDEIEALVLQKEDKD 95

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +   +  ++  K G +V+G V  V    +++ +  +G+   ++     
Sbjct: 96  GRLILSKKRAEYERAWIQVEEKFKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
              L+           G E + +++ +D   +N++LS +  L    +   ++  S +   
Sbjct: 156 VKDLDMYL--------GTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLAKG 207

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 208 MRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQ 266

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             RI+L LKQ+                                LK VE + +GS+++GKV
Sbjct: 267 RERISLGLKQTTEDPW---------------------------LKLVESYPVGSIVDGKV 299

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 935
            +   FG  +     ++V G +   ++A   +++       G  ++  ++++    R + 
Sbjct: 300 TKIVPFGAFIEL--GNNVEGLVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRIS 357

Query: 936 LSLKT 940
           LS+K 
Sbjct: 358 LSMKA 362



 Score = 43.9 bits (102), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 151/354 (42%), Gaps = 27/354 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T ++   G +VKG V+ ++    ++      + + P   +S  +   P     +G E+  
Sbjct: 27  TLTNFDEGDLVKGTVVKLEHDEVLLDIGFKSEGVIPSRELSIRKDADPSDIVALGDEIEA 86

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL  + K  R+ ++ K+   +     +    +A +  +  G + ++ K G  +    G+
Sbjct: 87  LVLQKEDKDGRLILSKKRAEYERAWIQVEEKFKAGE--VVTGEVIEVVKGGLILDI--GL 142

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSE 663
           +GF P S + L    +   MY +G  ++ R++      +++  SRR+ L    K  R   
Sbjct: 143 RGFLPASLVDLRR-VKDLDMY-LGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEI 200

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 722
              +  G  + G V  +      V +   G   G +    L+ +H+ H +    V+K G 
Sbjct: 201 LSKLAKGMRLKGTVSSIVDFGAFVDL---GGIDGLVHISELSWNHVNHPS---EVVKVGD 254

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
           E + ++L +D +   + L  K +  +   +L       +P  S+V G V  I+  G F+ 
Sbjct: 255 EVEVEVLDVDLQRERISLGLKQTTEDPWLKLVES----YPVGSIVDGKVTKIVPFGAFIE 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
               + G    S+         ++   VGQ V+  ++++N +  RI+LS+K + 
Sbjct: 311 LGNNVEGLVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSMKAAA 364


>gi|15644630|ref|NP_229244.1| ribosomal protein S1 [Thermotoga maritima MSB8]
          Length = 543

 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 169/409 (41%), Gaps = 25/409 (6%)

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           V E E+ K   +YK G  + ++IL   + E       +    + L     D +    VK 
Sbjct: 49  VPENELIKSLDEYKVGENLTLQILNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKA 108

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITV 563
           ++++    G  V   G V A  P  H +       P K+ +V   ++  +   +     V
Sbjct: 109 RIVSQTKGGYNVLLKGVVSAFLPGSHSLLRRNDPMPEKEIEV---IILEMAQTRRGPRIV 165

Query: 564 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 623
             ++ L   K+    S  +  D  I  G +  I   G  V    GV+GF PRSEL  D  
Sbjct: 166 VSRRALQDKKIEEFFSEKKVGD--IVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTR 223

Query: 624 CEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVV 680
             P  +   GQ +  +I+      + + LS    M  P    E+    +G +VSG V  +
Sbjct: 224 ISPEDIVKPGQNITAKIIELDKVKKNVILSLKKLMPDPWEKVEEKY-PVGKVVSGEVTSI 282

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLVLDNESS 735
            P     +V  +   +G +P   +        LE    +  +++      +++ +D E+ 
Sbjct: 283 HPFGF--FVRLEPGVEGLVPRSEVFWGNARKSLEEVVSVGDLVEV-----EVINVDKENR 335

Query: 736 NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
            L LS + +  +  + +       + N+VV G V  II+ G FV     + GF P S+  
Sbjct: 336 KLTLSYRKAKGDPWENI---EDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEIS 392

Query: 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
             +  +  +   +G+ V+  IL ++ E  +ITLS+K++  +  + +  +
Sbjct: 393 WKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKE 441



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 121/518 (23%), Positives = 210/518 (40%), Gaps = 69/518 (13%)

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRS 286
           E  + G ++   V   ED G ++ FG  S  GF+P N L ++     V   L LQ  + +
Sbjct: 17  EEFRRGQIVKGVVIGKEDDGVVVDFGGKS-EGFVPENELIKSLDEYKVGENLTLQ--ILN 73

Query: 287 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV--QSILENGVMLSFLTY 344
           ++   + + LS     + K + +  K       V   +VS      ++L  GV+ +FL  
Sbjct: 74  LNYEERSI-LSERRPVLRKTLEELRKDYEEKKPVKARIVSQTKGGYNVLLKGVVSAFLP- 131

Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-- 402
             G+  +            +ND    K++   IL +  T R   + ++   L ++     
Sbjct: 132 --GSHSLLR----------RNDPMPEKEIEVIILEMAQTRRGPRIVVSRRALQDKKIEEF 179

Query: 403 -SHVKVGDIYD------QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
            S  KVGDI +       +  V V+   G+   IP + +S    ++  D+          
Sbjct: 180 FSEKKVGDIVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPEDIV--------- 230

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
             K G  +  +I+    ++      LK    +           G VV G+V ++  FG  
Sbjct: 231 --KPGQNITAKIIELDKVKKNVILSLKKLMPDPWEKVEEKYPVGKVVSGEVTSIHPFGFF 288

Query: 516 VQFPGGVKALCPLPHM-------SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
           V+   GV+ L P   +       S  E+V       VG  +   V+ V  +++++T++++
Sbjct: 289 VRLEPGVEGLVPRSEVFWGNARKSLEEVVS------VGDLVEVEVINVDKENRKLTLSYR 342

Query: 567 KTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
           K       A    +    DR     +  G +T I K G FV    GV+GF P SE+    
Sbjct: 343 K-------AKGDPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKR 395

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVSGVVDVV 680
             EP  +  +G+ VK +I+     +R+I LS         E  L  +K  S+VSG +  +
Sbjct: 396 IDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKELKPDSIVSGTIKKI 455

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 718
             N+ VV  + +   +G +P  HL    E    +  V+
Sbjct: 456 V-NSGVVVEVEEYDVEGFVPNNHLLSEPETGKALNLVV 492


>gi|156086056|ref|XP_001610437.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154797690|gb|EDO06869.1| conserved hypothetical protein [Babesia bovis]
          Length = 729

 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 90  KKKKKKTERKANETVDDLGSLFGDGI-SGKLPRYANKITLKNISAGMKLWGVVAEVNEKD 148
           K++ + +E K+N     + +     + SGKL +     T   + AG  L G VA +    
Sbjct: 22  KRRDRSSEDKSNTFSFKVPTTSNRSLKSGKLFQRGRLPTYDKLEAGSLLLGSVAVIAPSG 81

Query: 149 LVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIG 208
           L I LPGGL G  RA+D +D  +        D +L     VG  V C VL       E+ 
Sbjct: 82  LRIHLPGGLVGFVRASDGVD--IPESARQRPDTILSGCVSVGSRVVCSVL-------EVK 132

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL--HFGLPSFTGFLPRNNL 266
           +  + LS+R S++ KGLS   +  GM+L A V++ EDHG IL  H G  S  G   R + 
Sbjct: 133 RHFVLLSMRPSVINKGLSSGALTTGMLLPASVRAHEDHGIILGFHLGDSSSIGGFVRYDD 192

Query: 267 AENSGIDVKP 276
            E +  D  P
Sbjct: 193 VEKTENDNPP 202


>gi|227889870|ref|ZP_04007675.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
 gi|227849734|gb|EEJ59820.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
          Length = 400

 Score = 77.0 bits (188), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   I KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHIDKPSD 239

Query: 542 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 595
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++   P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSDRRISLSI 351



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 39/251 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEQEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            L+G G  V   G  + G VH +E+    +  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHIDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            S G FI ++  +   V +S +++ +V+ P     +G+ V  +VL V+P  +R+ +++K +
Sbjct: 295  SFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSDRRISLSIKQA 354

Query: 1451 DSRTASQSEIN 1461
            D   A++SE N
Sbjct: 355  DP-NAAKSENN 364



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    + V     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHIDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 9/122 (7%)

Query: 1371 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +++ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHIDKPSDVLKAG 244

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1487 TI 1488
             +
Sbjct: 301  EV 302


>gi|71906915|ref|YP_284502.1| 30S ribosomal protein S1 [Dechloromonas aromatica RCB]
 gi|71846536|gb|AAZ46032.1| SSU ribosomal protein S1P [Dechloromonas aromatica RCB]
          Length = 559

 Score = 77.0 bits (188), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 162/368 (44%), Gaps = 36/368 (9%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+A+A +       ++K G  VKG V  +  +GA V   GG+  L  +  ++   +  P
Sbjct: 172 VLEATADKDREKLLENLKEGTTVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHP 230

Query: 540 GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +   VG E+  ++L    +  R+++  K+      + I   Y   T RL   G +T + 
Sbjct: 231 SEVLNVGDEVTAKILKFDAEKNRVSLGMKQLGDDPWVGIARRYPAGT-RLF--GKVTNLT 287

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            +G FV    G++G    SE+   +    PS +  +G  V+  I+      RRI+L   M
Sbjct: 288 DYGSFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEERRRISLG--M 345

Query: 657 KPTRVSE-DDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
           K  + +  DD     K G  V G +  +T   + +     G   G     HL+D    AT
Sbjct: 346 KQCQANPWDDFAMNHKKGDKVKGAIKSITDFGIFI-----GLPGGIDGLVHLSDLSWSAT 400

Query: 713 VMKSV--IKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNS 763
             +++   K G E + +++ +D E   + L  K        QL  D      A+H   NS
Sbjct: 401 GEEAIRNFKKGDEVEAVVLGIDVEKERISLGIK--------QLEGDPYTNFIATH-EKNS 451

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           +V+  V ++   G  +   G   G+   S+    +  DLS+   VG +V + I++V+ +T
Sbjct: 452 IVNCTVKSVDARGAVLTLDGENEGYLRASEFSRDRIDDLSQHLKVGDTVEAMIINVDRKT 511

Query: 824 GRITLSLK 831
             I LS+K
Sbjct: 512 RGINLSIK 519



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 21/171 (12%)

Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1378
            EG+ ++ KV+++ R      +V +S R+ L+  +  +   L             +E+L  
Sbjct: 147  EGKTLEFKVIKLDRKRN---NVVMSRRAVLEATADKDREKL-------------LENLKE 190

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
               V+G VKN+T  G F+ L   +D  + +++L+   V  P +   +G  V  ++L  + 
Sbjct: 191  GTTVKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEVLNVGDEVTAKILKFDA 249

Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
               RV + +K    +      +        G  + G++  +  YG F+ IE
Sbjct: 250  EKNRVSLGMK----QLGDDPWVGIARRYPAGTRLFGKVTNLTDYGSFVEIE 296


>gi|302826708|ref|XP_002994763.1| hypothetical protein SELMODRAFT_432659 [Selaginella moellendorffii]
 gi|300136931|gb|EFJ04172.1| hypothetical protein SELMODRAFT_432659 [Selaginella moellendorffii]
          Length = 196

 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            N    + +GQTV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 51   NPLRKYSVGQTVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFE-TVTIE 109

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT---GHVL 1221
            Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F +     K+VT    H+ 
Sbjct: 110  QSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFLK--STSKSVTCSSCHIR 167

Query: 1222 SINKEKKLLRLVLRP 1236
            S+N E+K + L L P
Sbjct: 168  SVNHERKQVDLSLHP 182


>gi|241730206|ref|XP_002413817.1| pdcd11 protein, putative [Ixodes scapularis]
 gi|215507633|gb|EEC17125.1| pdcd11 protein, putative [Ixodes scapularis]
          Length = 471

 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 175/452 (38%), Gaps = 103/452 (22%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEA-NEDN 181
           +T+  ++ GM + G V + +E  L + LPG + G   +   +     +L    +   EDN
Sbjct: 67  LTVHTLAEGMVVLGCVQQAHEFGLKVSLPGAITGQVDIMHVSQPYSTLLRKFAQGVQEDN 126

Query: 182 L----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
                L  +F  GQ V C V+    +K+      + LSL  + +   L    +Q GMVL 
Sbjct: 127 TELLKLGKMFRDGQTVVCKVISAIPEKEGSPNVCVTLSLDPAEVNSSLVPSMLQTGMVLQ 186

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLA-------ENSGIDVKPGLLLQGVVRSIDRT 290
           A V S+EDHGY +  GL    GFLPR           EN  + V  G L+   V S    
Sbjct: 187 AAVSSVEDHGYTMDCGLEGVDGFLPRTEATQFLKKCNENRALAV--GQLVSCAVVSETGG 244

Query: 291 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
            +V+ L++ P  V                     V   VQ  + +G+++S   +  G V 
Sbjct: 245 GRVLRLTARPSAVGA-------------------VYGTVQRAVPSGLLISLSPWVQGFVQ 285

Query: 351 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDI 410
             H+ +                                          R P S   V   
Sbjct: 286 TLHVSDR---------------------------------------PGRQPESGASV--- 303

Query: 411 YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
             + +++R+DR      D P        ++T         R +   Y+E +         
Sbjct: 304 --RCRLLRIDRS----CDPPKL------WLTCRRGLVTSRRPIVASYQEAT--------- 342

Query: 471 RHLEGLATGILKASAFEGLVFT-HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
              + +  GI+  ++ +GL+ + ++ VKPG +V G + A    G ++  P G++   PL 
Sbjct: 343 --RDTVTDGIVVQASPKGLLVSLYNGVKPGTLVYGVLRAFVRHGMLLNLPAGIRGFVPLK 400

Query: 530 HMSEFEIVKPGKK-FKVGAELVFRVLGVKSKR 560
           ++++  + +P    F VG  L  RV  V +K+
Sbjct: 401 NVADEFLREPSMSGFVVGQCLSARVTEVITKK 432



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 159/408 (38%), Gaps = 92/408 (22%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-----------------FEIVKPGK 541
           GMVV G V     FG  V  PG +     + H+S+                  E++K GK
Sbjct: 75  GMVVLGCVQQAHEFGLKVSLPGAITGQVDIMHVSQPYSTLLRKFAQGVQEDNTELLKLGK 134

Query: 542 KFKVGAELVFRVLGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
            F+ G  +V +V+        S  + VT      +   +++ S  +    ++    ++ +
Sbjct: 135 MFRDGQTVVCKVISAIPEKEGSPNVCVTLSLDPAEVNSSLVPSMLQTG--MVLQAAVSSV 192

Query: 597 EKHGCFVRF-YNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           E HG  +     GV GF PR+E       C  +    VGQ+V C ++S     R + L+ 
Sbjct: 193 EDHGYTMDCGLEGVDGFLPRTEATQFLKKCNENRALAVGQLVSCAVVSETGGGRVLRLT- 251

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             +P+ V           V G V    P+ +++ +    + +G + T H++D        
Sbjct: 252 -ARPSAVGA---------VYGTVQRAVPSGLLISL--SPWVQGFVQTLHVSD-------- 291

Query: 715 KSVIKPGYEFD-------QLLVLDN--ESSNLLLSAKYSLINSAQQLPSDASH------- 758
               +PG + +       +LL +D   +   L L+ +  L+ S +  P  AS+       
Sbjct: 292 ----RPGRQPESGASVRCRLLRIDRSCDPPKLWLTCRRGLVTSRR--PIVASYQEATRDT 345

Query: 759 ---------------------IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
                                + P ++V+G +   +  G  +     + GF P     D 
Sbjct: 346 VTDGIVVQASPKGLLVSLYNGVKPGTLVYGVLRAFVRHGMLLNLPAGIRGFVPLKNVADE 405

Query: 798 QRADLSKT-YYVGQSVRSNILDVNSETGRITLSLK-QSCCSSTDASFM 843
              + S + + VGQ + + + +V ++  ++ LS   ++C +S D   M
Sbjct: 406 FLREPSMSGFVVGQCLSARVTEVITKKNQLRLSTSLKTCATSLDNHAM 453


>gi|303326029|ref|ZP_07356472.1| ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
 gi|345892927|ref|ZP_08843736.1| 30S ribosomal protein S1 [Desulfovibrio sp. 6_1_46AFAA]
 gi|302863945|gb|EFL86876.1| ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
 gi|345046732|gb|EGW50612.1| 30S ribosomal protein S1 [Desulfovibrio sp. 6_1_46AFAA]
          Length = 569

 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 150/352 (42%), Gaps = 34/352 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G +V+GK   +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL 
Sbjct: 199 LEEGQIVQGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKEMITMGQELTLKVLS 257

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              ++ ++++  K+ +      I + + E        G +T +  +G FV    GV+G  
Sbjct: 258 FDRENNKVSLGLKQLVPDPWQDISARFPEGAK---CTGKVTNLVDYGAFVELEPGVEGLV 314

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--- 669
             SE+        PS M H G  V+  I+      +RI+L   MK  R +  +LV     
Sbjct: 315 HISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKKRISLG--MKQVRPNPWELVAERYP 372

Query: 670 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ GV+  +T   + +     G   G     H++D     +  K V  P   +    
Sbjct: 373 EGTVLEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKVRHPNELYKVGD 423

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D E+    L  K  + +    +P      +P    + G V NI + G FV 
Sbjct: 424 TVQAKVLTVDQENEKFTLGVKQLVDDPWGHVPD----TYPVGCTIKGVVTNITDFGLFVE 479

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               + G    S+    +    ++ Y  GQ +++ ++ V++E  R+ LS+KQ
Sbjct: 480 VEEGIEGLVHVSELSGKKVKTPAEIYKEGQEIQAKVIHVSAEERRLGLSIKQ 531


>gi|161350051|ref|YP_157511.2| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
          Length = 569

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 156/366 (42%), Gaps = 41/366 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K G V+KG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +V
Sbjct: 196 ANLKEGTVIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLNVGDEIDAKV 254

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      + I   Y + T RL   G +T I  +G FV    G++G
Sbjct: 255 LKFDQEKNRVSLGLKQLGEDPWVGISRRYPQGT-RLF--GKVTNITDYGAFVEVEQGIEG 311

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    P+ +  +G  V+  I+      RRI+L     M  P     DD  
Sbjct: 312 LVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPW----DDFA 367

Query: 668 ---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGY 722
              K G  V G +  +T   V +     G   G     HL+D     T  ++V   K G 
Sbjct: 368 INHKKGDKVRGQIKSITDFGVFI-----GLDGGIDGLVHLSDLSWSDTGEEAVRRFKKGD 422

Query: 723 EFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIET 775
           E + + L +D E   + L  K        QL  D      A+H   NS+V G V ++   
Sbjct: 423 EVEAVVLAIDVERERISLGVK--------QLEGDPFTNFIATH-EKNSIVGGTVKSVEAR 473

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-QSC 834
           G  +     + G+   S+A   +  DL+     GQ V   I++V+ +T  I LS++ +  
Sbjct: 474 GAVIALNEDVEGYLRASEAAAHRVDDLTTVLKEGQEVEVMIINVDRKTRSINLSIRAKDQ 533

Query: 835 CSSTDA 840
              +DA
Sbjct: 534 AEQSDA 539



 Score = 40.8 bits (94), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 1364 DTPGKHLEKI-EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1422
            +T G+  EK+  +L    +++G VKN+T  G F+ L   +D  + +++L+   V  P + 
Sbjct: 185  ETMGEEREKLLANLKEGTVIKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEV 243

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
              +G  +  +VL  +    RV + LK    +      +        G  + G++  +  Y
Sbjct: 244  LNVGDEIDAKVLKFDQEKNRVSLGLK----QLGEDPWVGISRRYPQGTRLFGKVTNITDY 299

Query: 1483 GLFITIE 1489
            G F+ +E
Sbjct: 300  GAFVEVE 306


>gi|451946147|ref|YP_007466742.1| SSU ribosomal protein S1P [Desulfocapsa sulfexigens DSM 10523]
 gi|451905495|gb|AGF77089.1| SSU ribosomal protein S1P [Desulfocapsa sulfexigens DSM 10523]
          Length = 579

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 153/360 (42%), Gaps = 46/360 (12%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            S ++ G ++KG +  +  +G  +   GG+  LC +  +S   +  P K +KVG EL  +
Sbjct: 196 RSVLEEGQIIKGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHPAKLYKVGQELEVK 254

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI----THGWITKIEKHGCFVRFYNG 608
           VL     +    H +  +  K      +A   +R      T G +  I  +G FV    G
Sbjct: 255 VL-----KYDKDHDRVSLGVKQLKADPWATVAERFPISEKTVGKVVSITDYGVFVELEEG 309

Query: 609 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           V+G    SE+        PS M  VG  ++  +++  P ++RI+L   MK    +  DLV
Sbjct: 310 VEGLIHVSEMTWSKKPRHPSKMVAVGDELEIMVLNIEPETKRISLG--MKQLLPNPWDLV 367

Query: 668 K----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
                +GS++ G V  +T   + +     G  +G     H++D     +  + +  P  +
Sbjct: 368 TDNYPVGSVIEGKVKNITDFGIFI-----GIEEGIDGLIHVSD----LSWTERIKHPSEK 418

Query: 724 FDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-----SVVHGYVCN 771
           + +       +L +D E     L  K        QL  D      N     +++ G + N
Sbjct: 419 YSKGETIQAVVLKIDKEHERFSLGIK--------QLEPDPWQAAYNNFPSGTIIEGKITN 470

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + + G FV+    + G    S+    +       Y VG ++++ +++V+++  +I LS+K
Sbjct: 471 VTDFGVFVQLEEGIEGLVHVSEISKDKVKTPVGMYEVGDTLKAIVINVSAKDRKIGLSIK 530



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 99/453 (21%), Positives = 178/453 (39%), Gaps = 88/453 (19%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILS 578
           GV A  P   +     ++P K     +G    F++L    KR        +V S+ AIL 
Sbjct: 136 GVPAFLPYSQID----LRPVKDLDALIGESFDFKILKFNRKR------NNVVISRRAILE 185

Query: 579 SYAEATDRL------------ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
              EA  +L            I  G IT I  +G F+    G+ G    ++L       P
Sbjct: 186 ---EARSKLREKMRSVLEEGQIIKGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHP 241

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 684
           + +Y VGQ ++ +++       R++L    +      +  +   +     G V  +T   
Sbjct: 242 AKLYKVGQELEVKVLKYDKDHDRVSLGVKQLKADPWATVAERFPISEKTVGKVVSITDYG 301

Query: 685 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS---- 740
           V V +            E   + L H + M    KP +   +++ + +E   ++L+    
Sbjct: 302 VFVEL------------EEGVEGLIHVSEMTWSKKPRHP-SKMVAVGDELEIMVLNIEPE 348

Query: 741 AKYSLINSAQQLPSDASHIHPN----SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            K   +   Q LP+    +  N    SV+ G V NI + G F+     + G    S    
Sbjct: 349 TKRISLGMKQLLPNPWDLVTDNYPVGSVIEGKVKNITDFGIFIGIEEGIDGLIHVSDLSW 408

Query: 797 GQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            +R    S+ Y  G+++++ +L ++ E  R +L +KQ       A++             
Sbjct: 409 TERIKHPSEKYSKGETIQAVVLKIDKEHERFSLGIKQLEPDPWQAAY------------- 455

Query: 856 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV- 914
                           F  G++IEGK+    DFGV V  EE   + G +   +++   V 
Sbjct: 456 --------------NNFPSGTIIEGKITNVTDFGVFVQLEEG--IEGLVHVSEISKDKVK 499

Query: 915 ------ESGSVIQAAILDVAKAERLVDLSLKTV 941
                 E G  ++A +++V+  +R + LS+KT+
Sbjct: 500 TPVGMYEVGDTLKAIVINVSAKDRKIGLSIKTL 532



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/422 (18%), Positives = 171/422 (40%), Gaps = 74/422 (17%)

Query: 721  GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
            G  FD ++L  + + +N+++S +  L  +  +L     S +    ++ G + NI + G F
Sbjct: 159  GESFDFKILKFNRKRNNVVISRRAILEEARSKLREKMRSVLEEGQIIKGAITNITDYGLF 218

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            +  +G + G    +    G+ +  +K Y VGQ +   +L  + +  R++L +KQ    + 
Sbjct: 219  ID-MGGMDGLCHITDLSWGRVSHPAKLYKVGQELEVKVLKYDKDHDRVSLGVKQ--LKAD 275

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
              + + E F + EK                           GKV    D+GV V  EE  
Sbjct: 276  PWATVAERFPISEKTV-------------------------GKVVSITDYGVFVELEEG- 309

Query: 899  DVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V G I   ++  +         V  G  ++  +L++    + + L +K +  + +    
Sbjct: 310  -VEGLIHVSEMTWSKKPRHPSKMVAVGDELEIMVLNIEPETKRISLGMKQLLPNPWDLVT 368

Query: 951  SNRQA-----QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY 1005
             N         K K   +    +G+ + ++ ++ +                   + +S  
Sbjct: 369  DNYPVGSVIEGKVKNITDFGIFIGIEEGIDGLIHV-------------------SDLSWT 409

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
               K P +++  G+++ A V+ +        L      I + E    + A   +++  G+
Sbjct: 410  ERIKHPSEKYSKGETIQAVVLKIDKEHERFSL-----GIKQLEPDPWQAA--YNNFPSGT 462

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            +++ +IT +    + ++   G  G +H++E++ DK   V+     +++G T+ A +I  S
Sbjct: 463  IIEGKITNVTDFGVFVQLEEGIEGLVHVSEISKDK---VKTPVGMYEVGDTLKAIVINVS 519

Query: 1126 NK 1127
             K
Sbjct: 520  AK 521



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 82/413 (19%), Positives = 165/413 (39%), Gaps = 67/413 (16%)

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            +AI E E  S  R K +S  + G +++  IT I    L +  G G  G  HIT+++  + 
Sbjct: 181  RAILE-EARSKLREKMRSVLEEGQIIKGAITNITDYGLFIDMG-GMDGLCHITDLSWGRV 238

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
            +    L+   K+GQ +  +++      D     + +L   P   TV+E            
Sbjct: 239  SHPAKLY---KVGQELEVKVLKYDKDHDRVSLGVKQLKADP-WATVAE----------RF 284

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAV 1216
             I ++  G V  + +    + +   ++  + + +  +      PS++        +G  +
Sbjct: 285  PISEKTVGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSKM------VAVGDEL 338

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               VL+I  E K + L ++     +     D+  DN       G ++ G++  I     G
Sbjct: 339  EIMVLNIEPETKRISLGMKQ----LLPNPWDLVTDNYPV----GSVIEGKVKNITDF--G 388

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            + + I   + G +H ++L           + E    P   Y +G+ ++  VL+I +    
Sbjct: 389  IFIGIEEGIDGLIHVSDL----------SWTERIKHPSEKYSKGETIQAVVLKIDKE--- 435

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
              H   SL     G+              P        +     I++G + NVT  G F+
Sbjct: 436  --HERFSL-----GIKQLE----------PDPWQAAYNNFPSGTIIEGKITNVTDFGVFV 478

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
             L   ++  V +S +S   V++P   + +G  +   V++V    +++ +++KT
Sbjct: 479  QLEEGIEGLVHVSEISKDKVKTPVGMYEVGDTLKAIVINVSAKDRKIGLSIKT 531



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            +++G VKN+T  G FI +   +D  + +S+LS    ++ P +++  G+ +   VL ++  
Sbjct: 376  VIEGKVKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPSEKYSKGETIQAVVLKIDKE 435

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +R  + +K  +     Q+  NN  +   G I+ G+I  V  +G+F+ +E
Sbjct: 436  HERFSLGIKQLEP-DPWQAAYNNFPS---GTIIEGKITNVTDFGVFVQLE 481



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 92/196 (46%), Gaps = 29/196 (14%)

Query: 377 ILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLL 427
           +L ++P ++ + L +     NP+ L+ +  P   V   KV +I D    + ++ G+  L 
Sbjct: 342 VLNIEPETKRISLGMKQLLPNPWDLVTDNYPVGSVIEGKVKNITDFGIFIGIEEGIDGL- 400

Query: 428 DIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKA 483
                       + +SD++  E ++   +KY +G  ++  +L   +  E  + GI  L+ 
Sbjct: 401 ------------IHVSDLSWTERIKHPSEKYSKGETIQAVVLKIDKEHERFSLGIKQLEP 448

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
             ++     +++   G +++GK+  V  FG  VQ   G++ L  +  +S+ ++  P   +
Sbjct: 449 DPWQA---AYNNFPSGTIIEGKITNVTDFGVFVQLEEGIEGLVHVSEISKDKVKTPVGMY 505

Query: 544 KVGAELVFRVLGVKSK 559
           +VG  L   V+ V +K
Sbjct: 506 EVGDTLKAIVINVSAK 521


>gi|325912014|ref|ZP_08174416.1| putative ribosomal protein S1 [Lactobacillus iners UPII 143-D]
 gi|325476199|gb|EGC79363.1| putative ribosomal protein S1 [Lactobacillus iners UPII 143-D]
          Length = 395

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  ++GKV  +  FGA +   GGV  L  +  +S   I KP    KVG E+  +V+G+  
Sbjct: 198 GDTIEGKVSRLTGFGAFINV-GGVDGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDD 256

Query: 559 --KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
             +RI+++ K+TL        S + EAT  L    I  G +  +   G F+   +G+QG 
Sbjct: 257 DRRRISLSIKQTLP-------SPFEEATSELHEGDIIDGEVKSLTSFGAFIEVASGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SE+      +PS    VGQ VK +++   P+ +RI+LS 
Sbjct: 310 VHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSDKRISLSI 351



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 34/197 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD + G++S+ L+G G  +  +G  + G VH +E+    +  P         D L     
Sbjct: 198  GDTIEGKVSR-LTGFGAFI-NVG-GVDGLVHISEISYKHIDKP--------SDVLK---V 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I    R    + LS++ +L                 P    E   +L   
Sbjct: 244  GQEVKVKVIGIDDDRR---RISLSIKQTL-----------------PSPFEEATSELHEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             I+ G VK++TS G FI ++  +   V +S +S+  VE P     +G+ V  +VL ++P 
Sbjct: 284  DIIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPS 343

Query: 1440 SKRVEVTLKTSDSRTAS 1456
             KR+ +++K ++S   S
Sbjct: 344  DKRISLSIKQTESDNKS 360



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNR-----APPSHVKVGDIYDQSKVVRVDRGLGL 425
           KK+N +I  +DP    + L+    +   R     +  + + VGD   + KV R+  G G 
Sbjct: 156 KKMNLKITEIDPNKNRLILSRKDLIEEEREEAFESVANQLVVGDTI-EGKVSRL-TGFGA 213

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +++          V IS+++ + + K     K G  V+V+++G    R    L+     
Sbjct: 214 FINVGGVD----GLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTL 269

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            S FE      S++  G ++ G+V ++ SFGA ++   G++ L  +  +S   + KP   
Sbjct: 270 PSPFEE---ATSELHEGDIIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDF 326

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            KVG  +  +VLG+    KRI+++ K+T
Sbjct: 327 LKVGQTVKVKVLGIDPSDKRISLSIKQT 354



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 40/314 (12%)

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHGW 592
           +VKPG KFK    LV R  G   +        T +K + A   +   YAE        G 
Sbjct: 65  LVKPGDKFKA---LVLRKAGGDKENGEFFFSVTRLKEREAYSELEKVYAEGN---TVEGV 118

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPA 646
           +T   + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P 
Sbjct: 119 VTGAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPN 168

Query: 647 SRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
             R+ LS         +    S  + + +G  + G V  +T     + V   G   G + 
Sbjct: 169 KNRLILSRKDLIEEEREEAFESVANQLVVGDTIEGKVSRLTGFGAFINV---GGVDGLVH 225

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
              ++   +H      V+K G E   +++ +D++   + LS K +L +  ++     S +
Sbjct: 226 ISEIS--YKHIDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTLPSPFEEA---TSEL 280

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
           H   ++ G V ++   G F+     + G    S+  + +    S    VGQ+V+  +L +
Sbjct: 281 HEGDIIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGI 340

Query: 820 NSETGRITLSLKQS 833
           +    RI+LS+KQ+
Sbjct: 341 DPSDKRISLSIKQT 354



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            ++G V  +T  G FI +   +D  V +S +S  +++ P     +G+ V  +V+ ++   +
Sbjct: 201  IEGKVSRLTGFGAFINVG-GVDGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRR 259

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ +++K +      ++     S LH GDI+ G++K + S+G FI +
Sbjct: 260  RISLSIKQTLPSPFEEA----TSELHEGDIIDGEVKSLTSFGAFIEV 302



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 134/348 (38%), Gaps = 55/348 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   + E   D      S+   G   K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGIIIKREFTADRNANLQSLVKPGDKFKALVLRKAGGDKE-NGEFFFSVTRLKEREAY 102

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
            +L K+   G+ V GVV       ++V V  +G+   ++ +      L+     K  +K 
Sbjct: 103 SELEKVYAEGNTVEGVVTGAVRGGLLVDVGTRGFLPASLISNRYVSDLKPYIGKKMNLK- 161

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNIIETGCF 778
                 +  +D   + L+LS K  LI   ++    S A+ +     + G V  +   G F
Sbjct: 162 ------ITEIDPNKNRLILSRK-DLIEEEREEAFESVANQLVVGDTIEGKVSRLTGFGAF 214

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  +G + G    S+         S    VGQ V+  ++ ++ +  RI+LS+KQ+  S  
Sbjct: 215 IN-VGGVDGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTLPSP- 272

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
                      EE  + L                  G +I+G+V     FG  +  E  S
Sbjct: 273 ----------FEEATSELHE----------------GDIIDGEVKSLTSFGAFI--EVAS 304

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
            + G +   +++   VE        G  ++  +L +  +++ + LS+K
Sbjct: 305 GIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSDKRISLSIK 352


>gi|298242788|ref|ZP_06966595.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297555842|gb|EFH89706.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 507

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           KPG V KG V  + +FGA V   GG   L  +  ++   +  P +   VG E+  +VL V
Sbjct: 253 KPGEVRKGVVSNLANFGAFVDL-GGADGLVHISQLAWSRVNHPSEVLHVGQEVEVQVLSV 311

Query: 557 --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
             + K+I ++ K+  V     +   Y   T   + +G +TKI   G F R  +G++G   
Sbjct: 312 DKERKKIALSIKRAEVDPWTTVEQRY---TPGQLVNGTVTKIAPFGAFARIEDGIEGLIH 368

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            SEL   PG +P S+   G  ++ RI+   P  RR+ LS 
Sbjct: 369 HSELA--PGTDPKSILQEGAQLQLRILRIDPERRRLGLSL 406


>gi|149928276|ref|ZP_01916519.1| 30S ribosomal protein S1 [Limnobacter sp. MED105]
 gi|149823005|gb|EDM82247.1| 30S ribosomal protein S1 [Limnobacter sp. MED105]
          Length = 567

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 151/361 (41%), Gaps = 28/361 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+++ G VVKG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +V
Sbjct: 195 SNLQEGSVVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLTVGEEIEAKV 253

Query: 554 LGVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L    ++  V+   K L +     LS    A  RL   G +T I  +G FV    G++G 
Sbjct: 254 LKFDQEKNRVSLGVKQLGEDPWVGLSRRYPADTRLF--GKVTNITDYGAFVEVEQGIEGL 311

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +   +P  +  +G  V+  ++      RRI+L          E+     K 
Sbjct: 312 VHVSEMDWTNKNVDPKKVVTLGDEVEVMVLEIDEERRRISLGMKQCAANPWEEFSTSFKK 371

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL 727
           G  VSG +  +T   V +     G   G     HL+D   + T  ++V   K G E + L
Sbjct: 372 GDKVSGAIKSITDFGVFI-----GLPGGIDGLVHLSDLSWNETGEEAVRRFKKGDEVEAL 426

Query: 728 -LVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
            L +D E   + L  K        QL  D     AS     S+V+G V ++   G  V  
Sbjct: 427 VLAIDTERERISLGIK--------QLSGDPFTVFASTNDRGSMVNGTVKSVDAKGVVVDL 478

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              + G+   S+  + +  D    Y  G +V + +++V+ +   I LS+K      TD +
Sbjct: 479 GDDIEGYLRASEISNDRVEDARNAYKEGDAVTAMVINVDRKARSIALSIKAKDQVDTDEA 538

Query: 842 F 842
            
Sbjct: 539 M 539



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 111/489 (22%), Positives = 201/489 (41%), Gaps = 84/489 (17%)

Query: 213 WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI 272
           WLSL  +L          + G ++T  +      G  L   + S   FLP       S +
Sbjct: 103 WLSLEQAL----------ESGELVTGTITGKVKGG--LTVMVNSIRAFLP------GSLV 144

Query: 273 DVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMM 324
           DV+P        G  L+  V  +DR R  V LS       + V +   G   + L+  + 
Sbjct: 145 DVRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSR------RAVVEATMGEEREKLLSNLQ 198

Query: 325 VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH--------KKVNAR 376
             + V+ I++N      +T +   VD+  +      T+      +H        +++ A+
Sbjct: 199 EGSVVKGIVKN------ITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGEEIEAK 252

Query: 377 ILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDRGL-GLL 426
           +L  D     V L +     +P++  +R  P+      KV +I D    V V++G+ GL+
Sbjct: 253 VLKFDQEKNRVSLGVKQLGEDPWVGLSRRYPADTRLFGKVTNITDYGAFVEVEQGIEGLV 312

Query: 427 ----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 482
               +D  +  V     VT+ D  E  V +++++       R RI         + G+ +
Sbjct: 313 HVSEMDWTNKNVDPKKVVTLGDEVEVMVLEIDEE-------RRRI---------SLGMKQ 356

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-K 541
            +A     F+ S  K G  V G + ++  FG  +  PGG+  L  L  +S  E  +   +
Sbjct: 357 CAANPWEEFSTS-FKKGDKVSGAIKSITDFGVFIGLPGGIDGLVHLSDLSWNETGEEAVR 415

Query: 542 KFKVGAELVFRVLGVKSKRITVTHK-KTLVKSKLAILSSYAEATDR-LITHGWITKIEKH 599
           +FK G E+   VL + ++R  ++   K L      +   +A   DR  + +G +  ++  
Sbjct: 416 RFKKGDEVEALVLAIDTERERISLGIKQLSGDPFTV---FASTNDRGSMVNGTVKSVDAK 472

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G  V   + ++G+   SE+  D   +  + Y  G  V   +++    +R I LS   K  
Sbjct: 473 GVVVDLGDDIEGYLRASEISNDRVEDARNAYKEGDAVTAMVINVDRKARSIALSIKAKD- 531

Query: 660 RVSEDDLVK 668
           +V  D+ +K
Sbjct: 532 QVDTDEAMK 540



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 1365 TPGKHLEKI-EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
            T G+  EK+  +L    +V+G VKN+T  G F+ L   +D  + +++L+   V  P +  
Sbjct: 185  TMGEEREKLLSNLQEGSVVKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEVL 243

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI-VIGQIKRVESY 1482
             +G+ +  +VL  +    RV + +K        +     LS  +  D  + G++  +  Y
Sbjct: 244  TVGEEIEAKVLKFDQEKNRVSLGVK-----QLGEDPWVGLSRRYPADTRLFGKVTNITDY 298

Query: 1483 GLFITIE 1489
            G F+ +E
Sbjct: 299  GAFVEVE 305


>gi|56311965|emb|CAI06610.1| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
          Length = 591

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K G V+KG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +V
Sbjct: 218 ANLKEGTVIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLNVGDEIDAKV 276

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      + I   Y + T RL   G +T I  +G FV    G++G
Sbjct: 277 LKFDQEKNRVSLGLKQLGEDPWVGISRRYPQGT-RLF--GKVTNITDYGAFVEVEQGIEG 333

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--- 667
               SE+   +    P+ +  +G  V+  I+      RRI+L  M +      DD     
Sbjct: 334 LVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLG-MKQCMSNPWDDFAINH 392

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  V G +  +T   V +     G   G     HL+D     T  ++V   K G E +
Sbjct: 393 KKGDKVRGQIKSITDFGVFI-----GLDGGIDGLVHLSDLSWSDTGEEAVRRFKKGDEVE 447

Query: 726 QL-LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCF 778
            + L +D E   + L  K        QL  D      A+H   NS+V G V ++   G  
Sbjct: 448 AVVLAIDVERERISLGVK--------QLEGDPFTNFIATH-EKNSIVGGTVKSVEARGAV 498

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-QSCCSS 837
           +     + G+   S+A   +  DL+     GQ V   I++V+ +T  I LS++ +     
Sbjct: 499 IALNEDVEGYLRASEAAAHRVDDLTTVLKEGQEVEVMIINVDRKTRSINLSIRAKDQAEQ 558

Query: 838 TDA 840
           +DA
Sbjct: 559 SDA 561



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 1364 DTPGKHLEKI-EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1422
            +T G+  EK+  +L    +++G VKN+T  G F+ L   +D  + +++L+   V  P + 
Sbjct: 207  ETMGEEREKLLANLKEGTVIKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEV 265

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
              +G  +  +VL  +    RV + LK    +      +        G  + G++  +  Y
Sbjct: 266  LNVGDEIDAKVLKFDQEKNRVSLGLK----QLGEDPWVGISRRYPQGTRLFGKVTNITDY 321

Query: 1483 GLFITIE 1489
            G F+ +E
Sbjct: 322  GAFVEVE 328


>gi|303232665|ref|ZP_07319350.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
 gi|302481151|gb|EFL44226.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
          Length = 391

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +KPGM +KG V ++  FGA V   GG+  L  +  +S   + +P +  KVG E+  +VL 
Sbjct: 204 LKPGMKLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLD 262

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +RI++  K+T      A++  Y       I  G +TK+   G FV   +GV+G  
Sbjct: 263 VDLNRERISLGLKQTTEDPWRALIKKYPIGA---IIEGKVTKLVTFGAFVDLGDGVEGLV 319

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
             SE+       P+ +  VG  V+ ++M      RRI+LS       + +DD
Sbjct: 320 HISEMSKQHVDAPAQVCKVGDTVQVKVMEVDLERRRISLSMKAAAETLGQDD 371



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 147/368 (39%), Gaps = 56/368 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDLVSLGDTIEALVLQKEDKE 95

Query: 648 RRINLSFMM----KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            R+ LS       +  +  E+   K G  V G V  V    +++ +  +G+    +P   
Sbjct: 96  GRLILSKKRAEYERAWKAVEEKF-KAGVNVEGEVIEVVKGGLILDIGLRGF----LPA-S 149

Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
           L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+    + P 
Sbjct: 150 LVD-LRRVKDLSAFMGERIE-SRVIEMDRNRNNVVLSRRVVLEAARKAERSEILDKLKPG 207

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+  
Sbjct: 208 MKLKGTVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLN 266

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIE 879
             RI+L LKQ+                              +E  W   ++ + IG++IE
Sbjct: 267 RERISLGLKQT------------------------------TEDPWRALIKKYPIGAIIE 296

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAER 932
           GKV +   FG  V   +   V G +   +++   V++       G  +Q  +++V    R
Sbjct: 297 GKVTKLVTFGAFVDLGDG--VEGLVHISEMSKQHVDAPAQVCKVGDTVQVKVMEVDLERR 354

Query: 933 LVDLSLKT 940
            + LS+K 
Sbjct: 355 RISLSMKA 362



 Score = 44.3 bits (103), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 142/338 (42%), Gaps = 63/338 (18%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1214
             D   G  VTG V K++++  LL I       + A+   +     P +L        +G 
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDL------VSLGD 82

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1272
             +   VL   KE K  RL+L       S K  +       ++     G  V G + +++ 
Sbjct: 83   TIEALVL--QKEDKEGRLIL-------SKKRAEYERAWKAVEEKFKAGVNVEGEVIEVVK 133

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            G  GL++ IG  L G +            P S  D  +   LS +  G+ ++ +V+E+ R
Sbjct: 134  G--GLILDIG--LRGFL------------PASLVDLRRVKDLSAF-MGERIESRVIEMDR 176

Query: 1333 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1392
                  +V LS R  L+       S++             ++ L P M ++G V ++   
Sbjct: 177  N---RNNVVLSRRVVLEAARKAERSEI-------------LDKLKPGMKLKGTVSSIVDF 220

Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TS 1450
            G F+ L   +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK  T 
Sbjct: 221  GAFVDLG-GIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLNRERISLGLKQTTE 279

Query: 1451 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            D   A       +    +G I+ G++ ++ ++G F+ +
Sbjct: 280  DPWRAL------IKKYPIGAIIEGKVTKLVTFGAFVDL 311


>gi|337747030|ref|YP_004641192.1| RNA binding S1 domain-containing protein [Paenibacillus
           mucilaginosus KNP414]
 gi|379720890|ref|YP_005313021.1| RNA binding S1 domain-containing protein [Paenibacillus
           mucilaginosus 3016]
 gi|386723496|ref|YP_006189822.1| RNA binding S1 domain-containing protein [Paenibacillus
           mucilaginosus K02]
 gi|336298219|gb|AEI41322.1| RNA binding S1 domain protein [Paenibacillus mucilaginosus KNP414]
 gi|378569562|gb|AFC29872.1| RNA binding S1 domain-containing protein [Paenibacillus
           mucilaginosus 3016]
 gi|384090621|gb|AFH62057.1| RNA binding S1 domain-containing protein [Paenibacillus
           mucilaginosus K02]
          Length = 414

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 150/349 (42%), Gaps = 27/349 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G +VKGKVI VD+  A V        + P+  +S  ++    +  ++G E+  +VL 
Sbjct: 30  IKKGDIVKGKVIKVDADQAFVDVGYKYDGVVPVKELSSVQVDDASQNVEIGQEIELKVLT 89

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +   R  +   K  V  + +     A+  ++ I    + ++ K G  V    G++GF P 
Sbjct: 90  IDDHREKLVLSKRAVDGEKSWDKLAADMENKTILEAKVAEVVKGGLVVDV--GLRGFVPA 147

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDDLV 667
           S +      E  S Y  G+ ++ R+        ++ LS        F  K   V    L 
Sbjct: 148 S-MVERTFVEDFSDYK-GRTLRLRVKEMDREKNKVILSQKDVLDEEFEGKKKEV----LA 201

Query: 668 KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
           KL  G ++ G V  +T     V +   G   G +    +A H  H      V+K G +  
Sbjct: 202 KLSVGQVLDGTVQRLTQFGAFVDI---GGVDGLVHISEMAWH--HVEKPSEVVKEGDKVQ 256

Query: 726 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            Q+L +D E+  + LS K +     QQ+   A  I+   +V G V  +++ G F+     
Sbjct: 257 VQVLKVDPENERISLSIKATQPGPWQQV---AGRINTGDIVTGTVKRLVQFGAFIEVAPG 313

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+      A   +    G+ V+  +LD+N +  RI+LS+K++
Sbjct: 314 VEGLVHISQIAHRHVATPQEVLKEGEEVKVKVLDMNPDEKRISLSIKET 362



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 143/330 (43%), Gaps = 57/330 (17%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ-----RRFHIGKAVTG 1218
            G  V G V KVD + A + +        +  D      EL   Q     +   IG+ +  
Sbjct: 33   GDIVKGKVIKVDADQAFVDVG-------YKYDGVVPVKELSSVQVDDASQNVEIGQEIEL 85

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             VL+I+  ++ L L  R   DG      + S D +   +    I+  ++++++ G  GLV
Sbjct: 86   KVLTIDDHREKLVLSKRAV-DG------EKSWDKLAADMENKTILEAKVAEVVKG--GLV 136

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V +G  L G V  + ++   V D             S Y +G+ ++ +V E+ R      
Sbjct: 137  VDVG--LRGFVPASMVERTFVED------------FSDY-KGRTLRLRVKEMDRE---KN 178

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             V LS +  LD              +  GK  E +  LS   ++ G V+ +T  G F+ +
Sbjct: 179  KVILSQKDVLDE-------------EFEGKKKEVLAKLSVGQVLDGTVQRLTQFGAFVDI 225

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
               +D  V +S ++  +VE P +    G  V  +VL V+P ++R+ +++K +      Q 
Sbjct: 226  G-GVDGLVHISEMAWHHVEKPSEVVKEGDKVQVQVLKVDPENERISLSIKATQPGPWQQV 284

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                   ++ GDIV G +KR+  +G FI +
Sbjct: 285  ----AGRINTGDIVTGTVKRLVQFGAFIEV 310


>gi|170726659|ref|YP_001760685.1| 30S ribosomal protein S1 [Shewanella woodyi ATCC 51908]
 gi|169812006|gb|ACA86590.1| ribosomal protein S1 [Shewanella woodyi ATCC 51908]
          Length = 555

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 145/345 (42%), Gaps = 20/345 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQSVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E+T      G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPESTK---LTGRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L          +D  D    
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFADRFAK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI--KPGYEFDQ- 726
           G  V+G +  +T   + +     G   G     HL+D   + T  ++V   K G E +  
Sbjct: 364 GDKVTGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEEAVAEYKKGDEINAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K +  +      +D       ++V+G V  +   G  +     + 
Sbjct: 419 VLSVDPERERISLGVKQTEDDPFNAYLADKKK---GAIVNGTVTAVDAKGVTIELAETVE 475

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+   S     +  D S  Y VG +V S  + V+ +   I+LS+K
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDAVESKFMGVDRKNRTISLSIK 520



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 129/597 (21%), Positives = 230/597 (38%), Gaps = 90/597 (15%)

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            +PG +V G V+ +++   +V    G+K+  P+P   +F+  +   +  VG  +   +  V
Sbjct: 19   RPGSIVTGVVVRIENGTVLVD--AGLKSESPIP-AEQFKNAQGELEIAVGDSVDVALDSV 75

Query: 557  KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            +       ++ +K        +L    E  + +I  G I    K G  V   NG++ F P
Sbjct: 76   EDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI--GVINGKVKGGFTVEL-NGIRAFLP 132

Query: 615  RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
             S + + P  + + + +     +V+K  +  +++  SRR  +       R +  + ++ G
Sbjct: 133  GSLVDVRPVRDTAHLENKDLEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEG 192

Query: 671  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
              V G+V  +T     V +   G   G +    +A   ++H +    ++  G E + ++L
Sbjct: 193  QSVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINVKVL 246

Query: 729  VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIETGCFVRFLG 783
              D E + + L  K        QL  D     S  +P S  + G V N+ + GCFV    
Sbjct: 247  KYDRERTRVSLGLK--------QLGEDPWLEISKRYPESTKLTGRVTNLTDYGCFVEIEE 298

Query: 784  RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ   +  D  
Sbjct: 299  GVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWD-- 355

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                                      + + F  G  + GK+    DFG+ +  +   D  
Sbjct: 356  -------------------------DFADRFAKGDKVTGKIKSITDFGIFIGLDGGIDGL 390

Query: 902  GFITHHQLAG------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
              ++     G      A  + G  I A +L V      + L +K    D F    +   A
Sbjct: 391  VHLSDISWNGTGEEAVAEYKKGDEINAVVLSVDPERERISLGVKQTEDDPF----NAYLA 446

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ- 1014
             KKK              VN  V  V    + + L E     GY  VSD + ++      
Sbjct: 447  DKKK-----------GAIVNGTVTAVDAKGVTIELAETVE--GYLRVSDISRERIEDAST 493

Query: 1015 -FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
             +  G +V +  M +   +    + L +KA  E +   +  +  K   DV S   AE
Sbjct: 494  VYSVGDAVESKFMGVDRKNRT--ISLSIKAKDEADEKEAMASLNKQEDDVMSSAMAE 548



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 135/333 (40%), Gaps = 56/333 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ V G V  + +  A + +   +   L I D A++    PSE+       ++G  +   
Sbjct: 192  GQSVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEINVK 244

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++E+  + L L+   +   D  ++IS         E   + GR++ +     G  V
Sbjct: 245  VLKYDRERTRVSLGLKQLGE---DPWLEISK-----RYPESTKLTGRVTNLTDY--GCFV 294

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VL+I    R    
Sbjct: 295  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNLGDEVEVLVLDIDEERR---R 341

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + L L+         N  D   D    G              V G +K++T  G FI L 
Sbjct: 342  ISLGLK-----QCKVNPWDDFADRFAKGDK------------VTGKIKSITDFGIFIGLD 384

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +G  E    E+  G  +   VLSV+P  +R+ + +K ++    +  
Sbjct: 385  GGIDGLVHLSDISWNGTGEEAVAEYKKGDEINAVVLSVDPERERISLGVKQTEDDPFNAY 444

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                L++   G IV G +  V++ G+ I +  T
Sbjct: 445  ----LADKKKGAIVNGTVTAVDAKGVTIELAET 473


>gi|330836582|ref|YP_004411223.1| RNA binding S1 domain-containing protein [Sphaerochaeta coccoides
           DSM 17374]
 gi|329748485|gb|AEC01841.1| RNA binding S1 domain protein [Sphaerochaeta coccoides DSM 17374]
          Length = 571

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 154/352 (43%), Gaps = 27/352 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S V  G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 197 SSVHIGDVVQGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQTIELRL 255

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + +  +++++ ++ K  + +   +         D  +    +TK+   G F+    G++G
Sbjct: 256 INIDPETQKVNLSLKH-MHEDPWSSFEKNFNVGD--VVKAPVTKLTTFGAFIEIAPGIEG 312

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVK 668
            A  SEL        P  +  VG VV+ +I+      +R++L    + +    S DD   
Sbjct: 313 LAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKKRVSLGLKQLEENPWDSIDDRYP 372

Query: 669 LG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFD 725
           +G +L   VV +    A +      G   G     H+ D    E    M S  K G   D
Sbjct: 373 VGKTLTRPVVKITNSGAFI------GLEDGIDGFLHIDDISWTEKVRNMSSFAKEGDMVD 426

Query: 726 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLG 783
            ++  ++ E+  + LS K    N    L  D    +P  S + G V N+ + G FV+ LG
Sbjct: 427 VVVTRVEPENRRIRLSVKQLEDNPWNTLKKD----YPKYSSISGEVTNVTDFGVFVKVLG 482

Query: 784 RLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            + G   +   V  D +  D + K + VG  V + ++DVN  T +++LS+K+
Sbjct: 483 GIEGLISKFHLVGPDEEYNDSVLKNFKVGDVVTAAVMDVNPSTQKLSLSIKE 534



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +VQG VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  R+++++P +
Sbjct: 204  VVQGVVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGQTIELRLINIDPET 262

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++V ++LK       S  E     N +VGD+V   + ++ ++G FI I
Sbjct: 263  QKVNLSLKHMHEDPWSSFE----KNFNVGDVVKAPVTKLTTFGAFIEI 306



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 152/368 (41%), Gaps = 40/368 (10%)

Query: 481 LKASAFEGLVFTHSD-VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-K 538
           L  S  E  VF   D ++ G +V G VI V++    V    G K+   +P + EF+++ +
Sbjct: 15  LMESLLEHDVFKSLDEIEDGTLVTGTVIQVNNEYVFVDV--GYKSEGRIP-LDEFDVIPE 71

Query: 539 PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            G+K KV    +    G K  +I ++ ++ +   K   L   AE  DR    G   K+ K
Sbjct: 72  DGEKVKV---FIITKDG-KGGQIQISKRRAVTLEKTEDLRKAAE--DRSPVLGKFVKVIK 125

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-----------YHVGQVVKCRIMSSIPAS 647
            G  +      +GF P S+  +    +P S+           +H G  +K  +      S
Sbjct: 126 GGYEIDLGGEYRGFCPMSKADVSRVEDPESLIGLSDYFIIDKFHAGTKLKSVV------S 179

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD- 706
           RR  L   +K  + +    V +G +V GVV   T     + +   G   G +   H+ D 
Sbjct: 180 RREYLEKRIKENKETFFSSVHIGDVVQGVVKSFTSFGAFIDL---GGFDGLL---HINDM 233

Query: 707 HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
              H T  K  +K G   + +L+ +D E+  + LS K+          S   + +   VV
Sbjct: 234 SWGHVTRPKDFVKKGQTIELRLINIDPETQKVNLSLKHM---HEDPWSSFEKNFNVGDVV 290

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETG 824
              V  +   G F+     + G A  S+    +R +  K    VG  V + IL  + +  
Sbjct: 291 KAPVTKLTTFGAFIEIAPGIEGLAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKK 350

Query: 825 RITLSLKQ 832
           R++L LKQ
Sbjct: 351 RVSLGLKQ 358


>gi|212703705|ref|ZP_03311833.1| hypothetical protein DESPIG_01752 [Desulfovibrio piger ATCC 29098]
 gi|212672857|gb|EEB33340.1| ribosomal protein S1 [Desulfovibrio piger ATCC 29098]
          Length = 574

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 150/352 (42%), Gaps = 34/352 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G +V GK   +  +G  V   GG+  L  +  MS   I  P +   +G +L  +VL 
Sbjct: 207 LEEGQIVHGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKEMITMGQDLTLKVLS 265

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              ++ ++++  K+ +      I + + E        G +T +  +G FV    GV+G  
Sbjct: 266 FDRENNKVSLGLKQLVPDPWQDISARFPEGAK---CTGKVTNLVDYGAFVELEPGVEGLV 322

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--- 669
             SE+        PS M H G  V+  I+      +RI+L   MK  R +  +LV     
Sbjct: 323 HISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKKRISLG--MKQVRPNPWELVAEKYP 380

Query: 670 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            G+++ GV+  +T   + +     G   G     H++D     +  K V  P   +    
Sbjct: 381 EGTILEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKVRHPNEIYKVGD 431

Query: 726 ----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
               ++L +D E+    L  K  + +    +PS     +P    V G V NI + G FV 
Sbjct: 432 TVQAKVLTVDQENEKFTLGIKQLVDDPWGHVPS----TYPVGCTVKGVVTNITDFGLFVE 487

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               + G    S+    +    ++ Y  GQ +++ ++ V++E  R+ LS+KQ
Sbjct: 488 VEEGIEGLVHVSELSSKKIKSPAELYKEGQEIQAKVIHVSAEERRLGLSIKQ 539


>gi|119774871|ref|YP_927611.1| 30S ribosomal protein S1 [Shewanella amazonensis SB2B]
 gi|119767371|gb|ABL99941.1| SSU ribosomal protein S1P [Shewanella amazonensis SB2B]
          Length = 555

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 147/345 (42%), Gaps = 20/345 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E T RL   G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENT-RLT--GRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L      T   ED  +    
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWEDFANRYNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  VSG +  +T   + +     G   G     HL+D   +AT  ++V   K G E +  
Sbjct: 364 GDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNATGEEAVSEYKKGDEIEAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K +  +       D       ++V+G V  +   G  V     + 
Sbjct: 419 VLSVDPERERISLGVKQTEDDPFNGYVGDKKK---GAIVNGTVTAVDAKGVTVELAEGVE 475

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+   +     +  D S  + VG +V +  + V+ +   ++LS++
Sbjct: 476 GYIRVADISRERVEDASTVFSVGDAVEAKFMGVDRKNRNVSLSIR 520



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 102/472 (21%), Positives = 196/472 (41%), Gaps = 71/472 (15%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           +PG +V+G V+A+++   +V    G+K+  P+P   +F+  +   +  VG ++   +  V
Sbjct: 19  RPGSIVRGTVVAIEN--GLVLVDAGLKSESPIP-AEQFKNAQGVLEIAVGDQVDVALDSV 75

Query: 557 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +       ++ +K        +L    E  + +I    I   +  G F    NG++ F P
Sbjct: 76  EDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIG---IINGKVKGGFTVELNGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            S + + P  + + + +     +V+K  +  +++  SRR  +       R +  + ++ G
Sbjct: 133 GSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEG 192

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
             V G+V  +T     V +   G   G +    +A   ++H +    ++  G E + ++L
Sbjct: 193 QAVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINVKVL 246

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNIIETGCFVRFLG 783
             D E + + L  K        QL  D     S  +P N+ + G V N+ + GCFV    
Sbjct: 247 KYDRERTRVSLGLK--------QLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIEE 298

Query: 784 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ C ++    
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQ-CKTNPWED 356

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------ 895
           F               ++++N            G  + GK+    DFG+ +  +      
Sbjct: 357 F---------------ANRYNK-----------GDKVSGKIKSITDFGIFIGLDGGIDGL 390

Query: 896 -EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
              SD+    T  + A +  + G  I+A +L V      + L +K    D F
Sbjct: 391 VHLSDISWNATGEE-AVSEYKKGDEIEAVVLSVDPERERISLGVKQTEDDPF 441



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 133/360 (36%), Gaps = 51/360 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEINV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPD-TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            V   DR R  V      L  DP   +SK   ++ +            ++ RV ++ + G
Sbjct: 244 KVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTR------------LTGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N   +V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      +N+      K+  I D    + +D G+  L+ +     +      +S+   
Sbjct: 352 NPWEDFANRYNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEEAVSE--- 408

Query: 448 EEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
                    YK+G  +   +L     R    L     +   F G V    D K G +V G
Sbjct: 409 ---------YKKGDEIEAVVLSVDPERERISLGVKQTEDDPFNGYV---GDKKKGAIVNG 456

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            V AVD+ G  V+   GV+    +  +S   +      F VG  +  + +GV  K   V+
Sbjct: 457 TVTAVDAKGVTVELAEGVEGYIRVADISRERVEDASTVFSVGDAVEAKFMGVDRKNRNVS 516


>gi|259500657|ref|ZP_05743559.1| 30S ribosomal protein S1 [Lactobacillus iners DSM 13335]
 gi|302191346|ref|ZP_07267600.1| 30S ribosomal protein S1 [Lactobacillus iners AB-1]
 gi|309804181|ref|ZP_07698259.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 11V1-d]
 gi|309805734|ref|ZP_07699774.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 09V1-c]
 gi|309807097|ref|ZP_07701076.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 03V1-b]
 gi|309807721|ref|ZP_07701656.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 01V1-a]
 gi|309809307|ref|ZP_07703176.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 2503V10-D]
 gi|312871404|ref|ZP_07731499.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 3008A-a]
 gi|312872369|ref|ZP_07732439.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2062A-h1]
 gi|312873932|ref|ZP_07733968.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2052A-d]
 gi|312875507|ref|ZP_07735510.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2053A-b]
 gi|315653508|ref|ZP_07906429.1| 30S ribosomal protein S1 [Lactobacillus iners ATCC 55195]
 gi|325912878|ref|ZP_08175256.1| putative ribosomal protein S1 [Lactobacillus iners UPII 60-B]
 gi|329921336|ref|ZP_08277774.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 1401G]
 gi|349611402|ref|ZP_08890638.1| hypothetical protein HMPREF1027_00065 [Lactobacillus sp. 7_1_47FAA]
 gi|259168041|gb|EEW52536.1| 30S ribosomal protein S1 [Lactobacillus iners DSM 13335]
 gi|308163764|gb|EFO66033.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 11V1-d]
 gi|308164987|gb|EFO67230.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 09V1-c]
 gi|308166527|gb|EFO68727.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 03V1-b]
 gi|308169032|gb|EFO71115.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 01V1-a]
 gi|308170420|gb|EFO72444.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 2503V10-D]
 gi|311089018|gb|EFQ47459.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2053A-b]
 gi|311090481|gb|EFQ48889.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2052A-d]
 gi|311092192|gb|EFQ50566.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2062A-h1]
 gi|311093057|gb|EFQ51406.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 3008A-a]
 gi|315489199|gb|EFU78840.1| 30S ribosomal protein S1 [Lactobacillus iners ATCC 55195]
 gi|325477871|gb|EGC81005.1| putative ribosomal protein S1 [Lactobacillus iners UPII 60-B]
 gi|328934628|gb|EGG31132.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 1401G]
 gi|348608724|gb|EGY58694.1| hypothetical protein HMPREF1027_00065 [Lactobacillus sp. 7_1_47FAA]
          Length = 395

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  ++GKV  +  FGA +   GGV  L  +  +S   I KP    KVG E+  +V+G+  
Sbjct: 198 GDTIEGKVSRLTGFGAFINV-GGVDGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDD 256

Query: 559 --KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
             +RI+++ K+TL        S + EAT  L    +  G +  +   G F+   +G+QG 
Sbjct: 257 DRRRISLSIKQTLP-------SPFEEATSELHEGDVIDGEVKSLTSFGAFIEVASGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SE+      +PS    VGQ VK +++   P+ +RI+LS 
Sbjct: 310 VHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSDKRISLSI 351



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 34/197 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD + G++S+ L+G G  +  +G  + G VH +E+    +  P         D L     
Sbjct: 198  GDTIEGKVSR-LTGFGAFI-NVG-GVDGLVHISEISYKHIDKP--------SDVLK---V 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I    R    + LS++ +L                 P    E   +L   
Sbjct: 244  GQEVKVKVIGIDDDRR---RISLSIKQTL-----------------PSPFEEATSELHEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             ++ G VK++TS G FI ++  +   V +S +S+  VE P     +G+ V  +VL ++P 
Sbjct: 284  DVIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPS 343

Query: 1440 SKRVEVTLKTSDSRTAS 1456
             KR+ +++K ++S   S
Sbjct: 344  DKRISLSIKQTESDNKS 360



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNR-----APPSHVKVGDIYDQSKVVRVDRGLGL 425
           KK+N +I  +DP    + L+    +   R     +  + + VGD   + KV R+  G G 
Sbjct: 156 KKMNLKITEIDPNKNRLILSRKDLIEEEREEAFESVANQLVVGDTI-EGKVSRL-TGFGA 213

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +++          V IS+++ + + K     K G  V+V+++G    R    L+     
Sbjct: 214 FINVGGVD----GLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTL 269

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            S FE      S++  G V+ G+V ++ SFGA ++   G++ L  +  +S   + KP   
Sbjct: 270 PSPFEE---ATSELHEGDVIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDF 326

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            KVG  +  +VLG+    KRI+++ K+T
Sbjct: 327 LKVGQTVKVKVLGIDPSDKRISLSIKQT 354



 Score = 48.1 bits (113), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 40/314 (12%)

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHGW 592
           +VKPG KFK    LV R  G   +        T +K + A   +   YAE        G 
Sbjct: 65  LVKPGDKFKA---LVLRKAGGDKENGEFFFSVTRLKEREAYSELEKVYAEGN---TVEGV 118

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPA 646
           +T   + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P 
Sbjct: 119 VTGAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPN 168

Query: 647 SRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
             R+ LS         +    S  + + +G  + G V  +T     + V   G   G + 
Sbjct: 169 KNRLILSRKDLIEEEREEAFESVANQLVVGDTIEGKVSRLTGFGAFINV---GGVDGLVH 225

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
              ++   +H      V+K G E   +++ +D++   + LS K +L +  ++     S +
Sbjct: 226 ISEIS--YKHIDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTLPSPFEEA---TSEL 280

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
           H   V+ G V ++   G F+     + G    S+  + +    S    VGQ+V+  +L +
Sbjct: 281 HEGDVIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGI 340

Query: 820 NSETGRITLSLKQS 833
           +    RI+LS+KQ+
Sbjct: 341 DPSDKRISLSIKQT 354



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            ++G V  +T  G FI +   +D  V +S +S  +++ P     +G+ V  +V+ ++   +
Sbjct: 201  IEGKVSRLTGFGAFINVG-GVDGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRR 259

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ +++K +      ++     S LH GD++ G++K + S+G FI +
Sbjct: 260  RISLSIKQTLPSPFEEA----TSELHEGDVIDGEVKSLTSFGAFIEV 302



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 134/348 (38%), Gaps = 55/348 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   + E   D      S+   G   K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGIIIKREFTADRNANLQSLVKPGDKFKALVLRKAGGDKE-NGEFFFSVTRLKEREAY 102

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
            +L K+   G+ V GVV       ++V V  +G+   ++ +      L+     K  +K 
Sbjct: 103 SELEKVYAEGNTVEGVVTGAVRGGLLVDVGTRGFLPASLISNRYVSDLKPYIGKKMNLK- 161

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNIIETGCF 778
                 +  +D   + L+LS K  LI   ++    S A+ +     + G V  +   G F
Sbjct: 162 ------ITEIDPNKNRLILSRK-DLIEEEREEAFESVANQLVVGDTIEGKVSRLTGFGAF 214

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  +G + G    S+         S    VGQ V+  ++ ++ +  RI+LS+KQ+  S  
Sbjct: 215 IN-VGGVDGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTLPSP- 272

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
                      EE  + L                  G VI+G+V     FG  +  E  S
Sbjct: 273 ----------FEEATSELHE----------------GDVIDGEVKSLTSFGAFI--EVAS 304

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
            + G +   +++   VE        G  ++  +L +  +++ + LS+K
Sbjct: 305 GIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSDKRISLSIK 352


>gi|157375435|ref|YP_001474035.1| 30S ribosomal protein S1 [Shewanella sediminis HAW-EB3]
 gi|157317809|gb|ABV36907.1| ribosomal protein S1 [Shewanella sediminis HAW-EB3]
          Length = 555

 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 151/347 (43%), Gaps = 24/347 (6%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQSVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E T RL   G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENT-RLT--GRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVKL- 669
              SE+   +    PS + ++G  V+  ++      RRI+L   +K  +V+  DD  +  
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLG--LKQCKVNPWDDFAERF 361

Query: 670 --GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI--KPGYEFD 725
             G  VSG +  +T   + +     G   G     HL+D   + T  ++V   K G E +
Sbjct: 362 QKGDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEEAVAEYKKGDEIN 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K +  +      +D       +VV+G V  +   G  +     
Sbjct: 417 AVVLSVDPERERISLGVKQTEDDPFNAYLADKKK---GTVVNGTVTAVDAKGVTIELADT 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   +     +  D S  Y VG +V S  + V+ +   I+LS++
Sbjct: 474 VEGYLRVADISRERIEDASTVYSVGDAVESKFMGVDRKNRTISLSIR 520



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 103/477 (21%), Positives = 189/477 (39%), Gaps = 69/477 (14%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            T  + +PG +V G V+++ +   +V    G+K+  P+P   +F+  +   +  VG  + 
Sbjct: 13  LTELEFRPGSIVTGIVVSIQN--GMVLVDAGLKSESPIP-AEQFKNDQGELEISVGDSVA 69

Query: 551 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             +  V+       ++ +K        +L    E  + +I  G I    K G  V   NG
Sbjct: 70  VALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI--GVINGKVKGGFTVEL-NG 126

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSED 664
           ++ F P S + + P  + + + +     +V+K  +  +++  SRR  +       R +  
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLENKDLEFKVIKLDQKRNNVVVSRRAVIESESSAERDALL 186

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
           + ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E
Sbjct: 187 ENLQEGQSVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDE 240

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNIIETGC 777
            + ++L  D E + + L  K        QL  D     S  +P N+ + G V N+ + GC
Sbjct: 241 INVKVLKYDRERTRVSLGLK--------QLGEDPWLEISKRYPENTRLTGRVTNLTDYGC 292

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           FV     + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ   
Sbjct: 293 FVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKV 351

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
           +  D                            + E F  G  + GK+    DFG+ +  +
Sbjct: 352 NPWD---------------------------DFAERFQKGDKVSGKIKSITDFGIFIGLD 384

Query: 896 EHSDVYGFITHHQLAG------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
              D    ++     G      A  + G  I A +L V      + L +K    D F
Sbjct: 385 GGIDGLVHLSDISWNGTGEEAVAEYKKGDEINAVVLSVDPERERISLGVKQTEDDPF 441



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G +K++T  G FI L   +D  V LS++S +G  E    E+  G  +   VLSV+P  
Sbjct: 367  VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVAEYKKGDEINAVVLSVDPER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +R+ + +K ++    +      L++   G +V G +  V++ G+ I + +T
Sbjct: 427  ERISLGVKQTEDDPFNAY----LADKKKGTVVNGTVTAVDAKGVTIELADT 473


>gi|322420780|ref|YP_004200003.1| 30S ribosomal protein S1 [Geobacter sp. M18]
 gi|320127167|gb|ADW14727.1| ribosomal protein S1 [Geobacter sp. M18]
          Length = 584

 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 162/369 (43%), Gaps = 35/369 (9%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T + +K G +V G V  +  +GA V   GGV  L  +  MS   +  P +  KVG  L  
Sbjct: 210 TLATLKEGDIVSGVVKNIAEYGAFVDL-GGVDGLLHVTDMSWGRLGHPSEMVKVGDTLNV 268

Query: 552 RVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL    ++  I++  K+T+    L +   Y E  +R+   G +  +  +G F+   +G+
Sbjct: 269 IVLKYDREKGKISLGLKQTVPDPWLNVSDRYKEG-ERV--SGKVVSLTDYGAFISLEDGI 325

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV- 667
           +G    SE+        PS +  VG+ V+  I+   PA+RRI+L   +K T V+   ++ 
Sbjct: 326 EGLVHVSEMSWTRRVRHPSEILKVGEEVEAVILGVDPANRRISLG--LKQTEVNPWTVIG 383

Query: 668 ---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
               +G+ + G +  +T   V +     G   G     H++D     +  + V  PG  F
Sbjct: 384 ERYPVGTKIEGQIKNITDFGVFI-----GIEDGIDGLVHVSD----ISWTRRVKHPGELF 434

Query: 725 DQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            +       +L +D E+  L L  K  + +   ++P       P S V G V ++ + G 
Sbjct: 435 TKGQTVQAVVLNIDVENERLSLGIKQLVADPWDEIP---RKYKPGSKVKGRVTSVTDFGI 491

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK--QSCC 835
           FV     + G    S+    + A       VG  + + +L+V+    +I LS+K  Q+  
Sbjct: 492 FVEIEEGIEGLIHVSEISYEKVASPKDFANVGDELEAVVLNVDMVEKKIALSIKALQTAM 551

Query: 836 SSTD-ASFM 843
              + AS+M
Sbjct: 552 EKAEIASYM 560



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 158/371 (42%), Gaps = 37/371 (9%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----NSGIDVKPGLLLQ 281
           +L T++EG +++  VK+I ++G  +  G     G L   +++     +    VK G  L 
Sbjct: 210 TLATLKEGDIVSGVVKNIAEYGAFVDLG--GVDGLLHVTDMSWGRLGHPSEMVKVGDTLN 267

Query: 282 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 341
            +V   DR +  + L      + + V      +S D    G  VS +V S+ + G  +S 
Sbjct: 268 VIVLKYDREKGKISLG-----LKQTVPDPWLNVS-DRYKEGERVSGKVVSLTDYGAFISL 321

Query: 342 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLL 396
                G V +  +  T    +        ++V A IL VDP +R + L L     NP+ +
Sbjct: 322 EDGIEGLVHVSEMSWTRRVRHPSEILKVGEEVEAVILGVDPANRRISLGLKQTEVNPWTV 381

Query: 397 HNRAPPSHVKV-GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLE 454
                P   K+ G I + +         G+ + I          V +SD++    V+   
Sbjct: 382 IGERYPVGTKIEGQIKNITD-------FGVFIGIED---GIDGLVHVSDISWTRRVKHPG 431

Query: 455 KKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
           + + +G  V+  +L      E L+ GI  L A  ++ +   +   KPG  VKG+V +V  
Sbjct: 432 ELFTKGQTVQAVVLNIDVENERLSLGIKQLVADPWDEIPRKY---KPGSKVKGRVTSVTD 488

Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTL 569
           FG  V+   G++ L  +  +S  ++  P     VG EL   VL V    K+I ++ K   
Sbjct: 489 FGIFVEIEEGIEGLIHVSEISYEKVASPKDFANVGDELEAVVLNVDMVEKKIALSIKALQ 548

Query: 570 VKSKLAILSSY 580
              + A ++SY
Sbjct: 549 TAMEKAEIASY 559



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 97/446 (21%), Positives = 172/446 (38%), Gaps = 72/446 (16%)

Query: 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
           + A A +  +  G IT   K G  V    GV+ F P S++ L PG        VGQ  + 
Sbjct: 124 TIAAAGEGGMIEGKITGKVKGGMTVDV--GVEAFLPASQVDLRPGGNMDRF--VGQTYQF 179

Query: 639 RIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
           RI+       ++  SRR+ L       R      +K G +VSGVV  +      V +   
Sbjct: 180 RILKLNRKRGNLVLSRRVLLEEERDKARTETLATLKEGDIVSGVVKNIAEYGAFVDL--- 236

Query: 693 GYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLIN 747
           G   G +   H+ D     L H + M   +K G   + +++  D E   + L  K ++ +
Sbjct: 237 GGVDGLL---HVTDMSWGRLGHPSEM---VKVGDTLNVIVLKYDREKGKISLGLKQTVPD 290

Query: 748 SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTY 806
               +   +        V G V ++ + G F+     + G    S+    +R    S+  
Sbjct: 291 PWLNV---SDRYKEGERVSGKVVSLTDYGAFISLEDGIEGLVHVSEMSWTRRVRHPSEIL 347

Query: 807 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
            VG+ V + IL V+    RI+L LKQ+  +                              
Sbjct: 348 KVGEEVEAVILGVDPANRRISLGLKQTEVNP----------------------------- 378

Query: 867 KWV---EGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESG 917
            W    E + +G+ IEG++    DFGV +  E+      H     +    +  G     G
Sbjct: 379 -WTVIGERYPVGTKIEGQIKNITDFGVFIGIEDGIDGLVHVSDISWTRRVKHPGELFTKG 437

Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS-KDLG----VHQ 972
             +QA +L++      + L +K +  D + E     +   K + R  S  D G    + +
Sbjct: 438 QTVQAVVLNIDVENERLSLGIKQLVADPWDEIPRKYKPGSKVKGRVTSVTDFGIFVEIEE 497

Query: 973 TVNAIVEIVKENYLVLSLPEYNHSIG 998
            +  ++ + + +Y  ++ P+   ++G
Sbjct: 498 GIEGLIHVSEISYEKVASPKDFANVG 523



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 96/464 (20%), Positives = 185/464 (39%), Gaps = 68/464 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 556
           G +++GK+      G  V    GV+A  P   +     ++PG      VG    FR+L +
Sbjct: 131 GGMIEGKITGKVKGGMTVDV--GVEAFLPASQVD----LRPGGNMDRFVGQTYQFRILKL 184

Query: 557 KSKRIT-VTHKKTLV-----KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
             KR   V  ++ L+     K++   L++  E     I  G +  I ++G FV    GV 
Sbjct: 185 NRKRGNLVLSRRVLLEEERDKARTETLATLKEGD---IVSGVVKNIAEYGAFVDL-GGVD 240

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVK 668
           G    +++       PS M  VG  +   ++       +I+L     +    ++  D  K
Sbjct: 241 GLLHVTDMSWGRLGHPSEMVKVGDTLNVIVLKYDREKGKISLGLKQTVPDPWLNVSDRYK 300

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQ 726
            G  VSG   VV+      ++  +   +G +    ++    + H +    ++K G E + 
Sbjct: 301 EGERVSG--KVVSLTDYGAFISLEDGIEGLVHVSEMSWTRRVRHPS---EILKVGEEVEA 355

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           +++ +D  +  + L  K + +N    +          + + G + NI + G F+     +
Sbjct: 356 VILGVDPANRRISLGLKQTEVNPWTVI---GERYPVGTKIEGQIKNITDFGVFIGIEDGI 412

Query: 786 TGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            G    S     +R       +  GQ+V++ +L+++ E  R++L +KQ      D    +
Sbjct: 413 DGLVHVSDISWTRRVKHPGELFTKGQTVQAVVLNIDVENERLSLGIKQLVADPWDEIPRK 472

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
                                      +  GS ++G+V    DFG+ V  EE   + G I
Sbjct: 473 ---------------------------YKPGSKVKGRVTSVTDFGIFVEIEEG--IEGLI 503

Query: 905 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
              +++   V S       G  ++A +L+V   E+ + LS+K +
Sbjct: 504 HVSEISYEKVASPKDFANVGDELEAVVLNVDMVEKKIALSIKAL 547



 Score = 47.8 bits (112), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 13/114 (11%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G V ++T  G FI L   ++  V +S +S    V  P +   +G+ V   +L V+P +
Sbjct: 305  VSGKVVSLTDYGAFISLEDGIEGLVHVSEMSWTRRVRHPSEILKVGEEVEAVILGVDPAN 364

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFITIEN 1490
            +R+ + LK        Q+E+N  + +     VG  + GQIK +  +G+FI IE+
Sbjct: 365  RRISLGLK--------QTEVNPWTVIGERYPVGTKIEGQIKNITDFGVFIGIED 410


>gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
 gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
          Length = 401

 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 559 --KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
              RI+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRNRISLSIKQTEP-------SPFEQATANLHDGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S ++
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSNE 362



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLK---V 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I                     +  N   LS     P    +   +L   
Sbjct: 244  GQDVKVKVIGID--------------------NDRNRISLSIKQTEPSPFEQATANLHDG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
             +R+ +++K +DS  +S 
Sbjct: 344  DRRISLSIKAADSNASSN 361



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     +NLH GDI  G++K + ++G F+ +
Sbjct: 259  NRISLSIKQTEPSPFEQA----TANLHDGDIFEGEVKSLTNFGAFVEV 302



 Score = 47.0 bits (110), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 134/322 (41%), Gaps = 36/322 (11%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VK G KFK    LV R  G   +        T +K + A      +        G +T
Sbjct: 64  DLVKTGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYNKLQKDYEAGTPIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYMGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+ + + LS K +  +  +Q     +++H 
Sbjct: 228 EIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQA---TANLHD 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             +  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLK--QSCCSSTDAS 841
              RI+LS+K   S  SS ++S
Sbjct: 343 SDRRISLSIKAADSNASSNESS 364


>gi|91715111|gb|ABE55037.1| SSU ribosomal protein S1P [Shewanella denitrificans OS217]
          Length = 577

 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 149/348 (42%), Gaps = 26/348 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 210 NLQEGQAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 268

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E+T      G +T +  +GCFV    GV+G 
Sbjct: 269 KYDRERTRVSLGLKQLGEDPWLEISKRYPESTK---LSGRVTNLTDYGCFVEIEEGVEGL 325

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLV--- 667
              SE+   +    PS + ++G  V+  ++      RRI+L   +K  +V+  DD     
Sbjct: 326 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLG--LKQCKVNPWDDFATRY 383

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
             G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E  
Sbjct: 384 NKGDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIH 438

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K +  +      +D       +VV+G V  +   G  V     
Sbjct: 439 AVVLSVDPERERISLGVKQTEDDPFNAYLADK---KKGTVVNGTVSAVDAKGVTVELADT 495

Query: 785 LTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+  R   +  +R  D S  Y VG ++ +  + V+ +   I+LS+K
Sbjct: 496 VEGYV-RVADISAERIEDASTVYTVGDAIEARFMGVDRKNRSISLSIK 542



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 126/589 (21%), Positives = 234/589 (39%), Gaps = 91/589 (15%)

Query: 483  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            A  FE  + T  + +PG +V+G V+A+++   +V    G+K+  P+    EF+  +   +
Sbjct: 28   ADLFEQSLLTL-EFRPGSIVRGTVVAIEN--GMVLVDAGLKSESPIS-ADEFKNAQGVLE 83

Query: 543  FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
             +VG E+   +  V+       ++ +K        +L    E  + +I    I   +  G
Sbjct: 84   IQVGDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIG---IINGKVKG 140

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMM 656
             F    NG++ F P S + + P  + + + +     +V+K  +  +++  SRR  +    
Sbjct: 141  GFTVELNGIRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESES 200

Query: 657  KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMK 715
               R +  + ++ G  V G+V  +T     V +   G   G +    +A   ++H +   
Sbjct: 201  SAERDALLENLQEGQAVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS--- 254

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYV 769
             ++  G E + ++L  D E + + L  K        QL  D     S  +P S  + G V
Sbjct: 255  EIVNVGDEINVKVLKYDRERTRVSLGLK--------QLGEDPWLEISKRYPESTKLSGRV 306

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRIT 827
             N+ + GCFV     + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+
Sbjct: 307  TNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRIS 365

Query: 828  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 887
            L LKQ   +  D  F               ++++N            G  + GK+    D
Sbjct: 366  LGLKQCKVNPWD-DF---------------ATRYNK-----------GDKVSGKIKSITD 398

Query: 888  FGVVVSFEEHSDVYGFITHHQLAG------ATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            FG+ +  +   D    ++     G      +  + G  I A +L V      + L +K  
Sbjct: 399  FGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERERISLGVKQT 458

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
              D F    +   A KKK              VN  V  V    + + L +     GY  
Sbjct: 459  EDDPF----NAYLADKKK-----------GTVVNGTVSAVDAKGVTVELADTVE--GYVR 501

Query: 1002 VSDYNTQKFPQKQ--FLNGQSVIATVMALPSSSTAGRLLLLLKAISETE 1048
            V+D + ++       +  G ++ A  M +   + +  + L +KA  E E
Sbjct: 502  VADISAERIEDASTVYTVGDAIEARFMGVDRKNRS--ISLSIKAKDEAE 548



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 135/358 (37%), Gaps = 47/358 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 208 LENLQEGQAVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEINV 265

Query: 283 VVRSIDRTRKVV-----YLSSDPD-TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            V   DR R  V      L  DP   +SK   +  K            +S RV ++ + G
Sbjct: 266 KVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTK------------LSGRVTNLTDYG 313

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N   +V   +L +D   R + L L     
Sbjct: 314 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKV 373

Query: 392 NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      +N+      K+  I D    + +D G+  L+ +     +      +S+   
Sbjct: 374 NPWDDFATRYNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSE--- 430

Query: 448 EEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
                    YK+G  +   +L      E ++ G+ K +  +      +D K G VV G V
Sbjct: 431 ---------YKKGDEIHAVVLSVDPERERISLGV-KQTEDDPFNAYLADKKKGTVVNGTV 480

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            AVD+ G  V+    V+    +  +S   I      + VG  +  R +GV  K  +++
Sbjct: 481 SAVDAKGVTVELADTVEGYVRVADISAERIEDASTVYTVGDAIEARFMGVDRKNRSIS 538



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G +K++T  G FI L   +D  V LS++S +G  E    E+  G  +   VLSV+P  
Sbjct: 389  VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPER 448

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +R+ + +K ++    +      L++   G +V G +  V++ G+ + + +T
Sbjct: 449  ERISLGVKQTEDDPFNAY----LADKKKGTVVNGTVSAVDAKGVTVELADT 495


>gi|440295400|gb|ELP88313.1| programmed cell death protein, putative [Entamoeba invadens IP1]
          Length = 1782

 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 186/450 (41%), Gaps = 43/450 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  V+GKV  +     ++     V  +C   H++E         F  G  +  RVL +K+
Sbjct: 442 GAFVEGKVKTITKSYLVISVSKYVTGICFRKHVAEIPPDDLSDVFVKGQSVKARVLSIKN 501

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-KHGCFVRFYNGVQGFAPRSE 617
                T KK+ +  +L+I++S  +A D  IT+  +  ++ K G  + F+  V+G+ P  E
Sbjct: 502 NAFEFTMKKSYMVPELSIIASTEDALDNQITYAMVDHVDPKTGVNISFFGDVKGYVPIVE 561

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GS 671
           L  D   E  S++ +      R+  S     +I  S  + P     D +V L      G 
Sbjct: 562 L-FDHRVEAISLFSI-----LRVRVSSVEKGKITASLNLYPKEGKVDKIVDLISKFQVGE 615

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 731
           + SG V     N ++V +     S  +I   H  +  +  + ++  IK G  F+Q LVL 
Sbjct: 616 IYSGTVIGKRMNKMLVRLRKDDASYVSILPNHYVEDGDDGSGIQEKIKNGSVFEQCLVLS 675

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
           N +  + ++ K SLI    ++    S+    ++  G     +  GC V F+G+       
Sbjct: 676 NIAGKITITTKKSLIALKSKIAKCDSY---QTLEEG-----VYVGC-VNFVGQF------ 720

Query: 792 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR---ITLSLKQSCCSSTDASFMQEHFL 848
            KAV          +Y    +  + +D+ ++  +     L L Q+       +   +HF 
Sbjct: 721 -KAV--------VVFYNHVQISVHAIDITNDQDKPMNTLLKLGQTVVGKVRRAKEVKHFN 771

Query: 849 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS-FEEHSDVYGFITHH 907
           + E        +         + F+ GS I   V E+ D+G++ S + +++    F    
Sbjct: 772 MRENAGYCMPEEAFLLPAFPQKPFVFGSEIVITVDETQDYGIIGSAYLDNTKYTTFTPKA 831

Query: 908 QLAG--ATVESGSVIQAAILDVAKAERLVD 935
            + G  AT   G+  +A ++   +   +VD
Sbjct: 832 GIKGEIATFAIGNTFKAVVIGFDQKTNIVD 861


>gi|162210774|ref|YP_562760.2| 30S ribosomal protein S1 [Shewanella denitrificans OS217]
          Length = 555

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 149/348 (42%), Gaps = 26/348 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E+T      G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPESTK---LSGRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLV--- 667
              SE+   +    PS + ++G  V+  ++      RRI+L   +K  +V+  DD     
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLG--LKQCKVNPWDDFATRY 361

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
             G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E  
Sbjct: 362 NKGDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIH 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K +  +      +D       +VV+G V  +   G  V     
Sbjct: 417 AVVLSVDPERERISLGVKQTEDDPFNAYLADK---KKGTVVNGTVSAVDAKGVTVELADT 473

Query: 785 LTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+  R   +  +R  D S  Y VG ++ +  + V+ +   I+LS+K
Sbjct: 474 VEGYV-RVADISAERIEDASTVYTVGDAIEARFMGVDRKNRSISLSIK 520



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 126/589 (21%), Positives = 234/589 (39%), Gaps = 91/589 (15%)

Query: 483  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            A  FE  + T  + +PG +V+G V+A+++   +V    G+K+  P+    EF+  +   +
Sbjct: 6    ADLFEQSLLTL-EFRPGSIVRGTVVAIEN--GMVLVDAGLKSESPIS-ADEFKNAQGVLE 61

Query: 543  FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
             +VG E+   +  V+       ++ +K        +L    E  + +I    I   +  G
Sbjct: 62   IQVGDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIG---IINGKVKG 118

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMM 656
             F    NG++ F P S + + P  + + + +     +V+K  +  +++  SRR  +    
Sbjct: 119  GFTVELNGIRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESES 178

Query: 657  KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMK 715
               R +  + ++ G  V G+V  +T     V +   G   G +    +A   ++H +   
Sbjct: 179  SAERDALLENLQEGQAVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS--- 232

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYV 769
             ++  G E + ++L  D E + + L  K        QL  D     S  +P S  + G V
Sbjct: 233  EIVNVGDEINVKVLKYDRERTRVSLGLK--------QLGEDPWLEISKRYPESTKLSGRV 284

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRIT 827
             N+ + GCFV     + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+
Sbjct: 285  TNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRIS 343

Query: 828  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 887
            L LKQ   +  D  F               ++++N            G  + GK+    D
Sbjct: 344  LGLKQCKVNPWD-DF---------------ATRYNK-----------GDKVSGKIKSITD 376

Query: 888  FGVVVSFEEHSDVYGFITHHQLAG------ATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            FG+ +  +   D    ++     G      +  + G  I A +L V      + L +K  
Sbjct: 377  FGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERERISLGVKQT 436

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
              D F    +   A KKK              VN  V  V    + + L +     GY  
Sbjct: 437  EDDPF----NAYLADKKK-----------GTVVNGTVSAVDAKGVTVELADTVE--GYVR 479

Query: 1002 VSDYNTQKFPQKQ--FLNGQSVIATVMALPSSSTAGRLLLLLKAISETE 1048
            V+D + ++       +  G ++ A  M +   + +  + L +KA  E E
Sbjct: 480  VADISAERIEDASTVYTVGDAIEARFMGVDRKNRS--ISLSIKAKDEAE 526



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 135/358 (37%), Gaps = 47/358 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEINV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPD-TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            V   DR R  V      L  DP   +SK   +  K            +S RV ++ + G
Sbjct: 244 KVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTK------------LSGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N   +V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKV 351

Query: 392 NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      +N+      K+  I D    + +D G+  L+ +     +      +S+   
Sbjct: 352 NPWDDFATRYNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSE--- 408

Query: 448 EEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
                    YK+G  +   +L      E ++ G+ K +  +      +D K G VV G V
Sbjct: 409 ---------YKKGDEIHAVVLSVDPERERISLGV-KQTEDDPFNAYLADKKKGTVVNGTV 458

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            AVD+ G  V+    V+    +  +S   I      + VG  +  R +GV  K  +++
Sbjct: 459 SAVDAKGVTVELADTVEGYVRVADISAERIEDASTVYTVGDAIEARFMGVDRKNRSIS 516



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G +K++T  G FI L   +D  V LS++S +G  E    E+  G  +   VLSV+P  
Sbjct: 367  VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
            +R+ + +K ++    +      L++   G +V G +  V++ G+ + + +T
Sbjct: 427  ERISLGVKQTEDDPFNAY----LADKKKGTVVNGTVSAVDAKGVTVELADT 473


>gi|296272028|ref|YP_003654659.1| RNA binding S1 domain-containing protein [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096203|gb|ADG92153.1| RNA binding S1 domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 550

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 117/516 (22%), Positives = 212/516 (41%), Gaps = 73/516 (14%)

Query: 454 EKKYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
           E KYK G  + V + G R  +   +   +L+   F+  V  H++    + ++GK+I++  
Sbjct: 65  EVKYKVGDTIPVILTGIRGEKPSISHKKVLQKEKFDAFVKEHTEDLEDVTIEGKIISIKP 124

Query: 512 FGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKT 568
            G  I++   G +   P+           GKK K       +VL +   +  I V+ KK 
Sbjct: 125 RGGFIIEDDNGCEYFMPMAQSYLKAQGALGKKVKA------KVLKINEAQNSIIVSRKKL 178

Query: 569 LVKSKLAILSSYAE--ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           + +SK+   +  A+    D LI +G I KI  +G FV    G+ G    +E+       P
Sbjct: 179 IEESKIEKDAKVAQFLENDGLI-NGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNP 236

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPNA 684
           S+ Y  G  V  +++S   A + ++LS     +   E+  D + +G  ++  V +    +
Sbjct: 237 SNYYAEGDEVTVKVLSYDKAKQHLSLSVKAALSNPWEEIRDELDVGDTIT--VTISNFES 294

Query: 685 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNL 737
              +V      +G +       H+   +  K++  P      G E + +++ LD +   L
Sbjct: 295 YGAFVNLGNDIEGLL-------HISEISWNKNLKNPKDLLTLGDEVNVEVIELDVDKKRL 347

Query: 738 LLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
            +S K     + Q+ P +  +  H    +V G V  + E G FV  LG + G     +A 
Sbjct: 348 RVSLK-----NLQEKPFAKFTKEHKVGDIVTGKVATLTEFGAFVT-LGDVDGLLHNEEAS 401

Query: 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
               A     Y  G  +   I+ ++ E   I+LS+K     S    F   H         
Sbjct: 402 WEGNAKCKNLYKKGDELEVKIIKIDKEKENISLSIK-DITDSPAKKFQATHK-------- 452

Query: 856 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT-- 913
                             IG +++G + +  DFG+ +  E++ D  G + +   A  T  
Sbjct: 453 ------------------IGDIVKGTIKDLKDFGLFIKLEDNLD--GLVRNEDFAPTTAD 492

Query: 914 -VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
            +E G  I+A ++++      V LS+K +   + RE
Sbjct: 493 NIEIGKEIEAVVVNIDTNRNRVRLSIKRLEQQQERE 528



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 178/430 (41%), Gaps = 76/430 (17%)

Query: 1065 SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA- 1123
            S+V   I EI    + +  G    GR+HI+E+              +K+G T+   +   
Sbjct: 29   SVVDGVIVEISGENVSVDVGQKVEGRLHISEITIGGE-------VKYKVGDTIPVILTGI 81

Query: 1124 KSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWAL 1180
            +  KP +  K  L +      +   +E    +  E   +SI  R  G++ + DN  E+ +
Sbjct: 82   RGEKPSISHKKVLQKEKFDAFVKEHTEDLEDVTIEGKIISIKPR-GGFIIEDDNGCEYFM 140

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
                 +LKAQ                     +GK V   VL IN+ +  + +  +     
Sbjct: 141  PMAQSYLKAQ-------------------GALGKKVKAKVLKINEAQNSIIVSRKKL--- 178

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            I +  ++  +  +  F+    ++ G I KI S   G+ V +G  + G V++ E+      
Sbjct: 179  IEESKIE-KDAKVAQFLENDGLINGTIKKITS--YGMFVDLGG-IDGLVNYNEISY---- 230

Query: 1301 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
                   +G  +P + Y EG  V  KVL   +  +   H+ LS++++L            
Sbjct: 231  -------KGPVNPSNYYAEGDEVTVKVLSYDKAKQ---HLSLSVKAAL------------ 268

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESP 1419
                 P + +    D+   + V   + N  S G F+ L   ++  + +S +S +  +++P
Sbjct: 269  ---SNPWEEIRDELDVGDTITVT--ISNFESYGAFVNLGNDIEGLLHISEISWNKNLKNP 323

Query: 1420 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKR 1478
            +    +G  V   V+ ++   KR+ V+LK    +  ++      +  H VGDIV G++  
Sbjct: 324  KDLLTLGDEVNVEVIELDVDKKRLRVSLKNLQEKPFAK-----FTKEHKVGDIVTGKVAT 378

Query: 1479 VESYGLFITI 1488
            +  +G F+T+
Sbjct: 379  LTEFGAFVTL 388



 Score = 47.0 bits (110), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 87/438 (19%), Positives = 178/438 (40%), Gaps = 80/438 (18%)

Query: 530 HMSEFEIVKPGK-KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRL 587
           H+SE  I   G+ K+KVG  +   + G++ ++ +++HKK L K K  A +  + E  + +
Sbjct: 56  HISEITI--GGEVKYKVGDTIPVILTGIRGEKPSISHKKVLQKEKFDAFVKEHTEDLEDV 113

Query: 588 ITHGWITKIEKHGCF-VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----- 641
              G I  I+  G F +   NG + F P ++  L       +   +G+ VK +++     
Sbjct: 114 TIEGKIISIKPRGGFIIEDDNGCEYFMPMAQSYL------KAQGALGKKVKAKVLKINEA 167

Query: 642 -SSIPASRR--INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
            +SI  SR+  I  S + K  +V++   ++   L++G +  +T   + V +   G   G 
Sbjct: 168 QNSIIVSRKKLIEESKIEKDAKVAQ--FLENDGLINGTIKKITSYGMFVDL---GGIDGL 222

Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQ 751
           +    ++         K  + P   + +       +L  D    +L LS K +L N  ++
Sbjct: 223 VNYNEIS--------YKGPVNPSNYYAEGDEVTVKVLSYDKAKQHLSLSVKAALSNPWEE 274

Query: 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQ 810
           +  +   +     +   + N    G FV     + G    S+ + +    +      +G 
Sbjct: 275 IRDE---LDVGDTITVTISNFESYGAFVNLGNDIEGLLHISEISWNKNLKNPKDLLTLGD 331

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +++++ +  R+ +SLK +      A F +EH                        
Sbjct: 332 EVNVEVIELDVDKKRLRVSLK-NLQEKPFAKFTKEHK----------------------- 367

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA-------TVESGSVIQAA 923
              +G ++ GKV    +FG  V+     DV G + + + +           + G  ++  
Sbjct: 368 ---VGDIVTGKVATLTEFGAFVTL---GDVDGLLHNEEASWEGNAKCKNLYKKGDELEVK 421

Query: 924 ILDVAKAERLVDLSLKTV 941
           I+ + K +  + LS+K +
Sbjct: 422 IIKIDKEKENISLSIKDI 439


>gi|317154744|ref|YP_004122792.1| 30S ribosomal protein S1 [Desulfovibrio aespoeensis Aspo-2]
 gi|316944995|gb|ADU64046.1| ribosomal protein S1 [Desulfovibrio aespoeensis Aspo-2]
          Length = 623

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 152/352 (43%), Gaps = 32/352 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  V GKV  +  +G  +   GG+  L  +  MS   I  P +  ++G EL  ++L 
Sbjct: 203 LEDGQSVTGKVKNITEYGVFIDL-GGLDGLLHITDMSWKRIKHPKEMVQLGDELELKILS 261

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               ++++++  K+ +      I   Y E   R    G IT +  +G FV   NGV+G  
Sbjct: 262 FDRDAQKVSLGLKQLVSDPWENIAEKYPEGA-RFT--GVITNLADYGAFVELENGVEGLV 318

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK---- 668
             SE+        PS M  VG  V+  ++      +RI+L   MK    +  D+V     
Sbjct: 319 HISEMSWTRKLRHPSQMVKVGDEVEVVVLGVDQDKKRISLG--MKQISPNPWDVVAEKYP 376

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYE 723
            G+++ G +  +T   V +     G  +G     H++D      + H +    V K G  
Sbjct: 377 EGTVLEGAIKNITEFGVFI-----GIEEGIDGLIHVSDISWTKKIRHPS---EVYKSGDA 428

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRF 781
              ++L +D E+    L  K    +   Q+P      +P   ++ G V NI + G FV  
Sbjct: 429 VQAKVLTVDKENEKFTLGVKQLTEDPWTQVPGK----YPVGQMITGTVTNITDFGLFVEV 484

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
              + G    S+    +    S+ Y  G ++ + ++ V+++  R+ LS+KQ+
Sbjct: 485 EEGIEGLVHVSEISRKKIKSPSEIYKEGDTIEAKVIHVSADERRLGLSIKQT 536



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 102/486 (20%), Positives = 184/486 (37%), Gaps = 81/486 (16%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFM 655
            G +     GV+ F P S + L P  +  ++ +     +++K  R  S++  SRR+ L  M
Sbjct: 132  GGYTVDLGGVEAFLPGSHVDLRPVPDMDALVNKKFDFKILKINRRRSNVIVSRRVLLEEM 191

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHA 711
                R    D ++ G  V+G V  +T   V + +   G   G +   H+ D     ++H 
Sbjct: 192  RSEQRDKLLDTLEDGQSVTGKVKNITEYGVFIDL---GGLDGLL---HITDMSWKRIKHP 245

Query: 712  TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKY----SLINSAQQLPSDASHIHPNSVVH 766
               K +++ G E + ++L  D ++  + L  K        N A++ P  A          
Sbjct: 246  ---KEMVQLGDELELKILSFDRDAQKVSLGLKQLVSDPWENIAEKYPEGARFT------- 295

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGR 825
            G + N+ + G FV     + G    S+    ++    S+   VG  V   +L V+ +  R
Sbjct: 296  GVITNLADYGAFVELENGVEGLVHISEMSWTRKLRHPSQMVKVGDEVEVVVLGVDQDKKR 355

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            I+L +KQ   +  D                              E +  G+V+EG +   
Sbjct: 356  ISLGMKQISPNPWDVV---------------------------AEKYPEGTVLEGAIKNI 388

Query: 886  NDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             +FGV +  EE      H     +    +      +SG  +QA +L V K      L +K
Sbjct: 389  TEFGVFIGIEEGIDGLIHVSDISWTKKIRHPSEVYKSGDAVQAKVLTVDKENEKFTLGVK 448

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
             +  D + +                     V Q +   V  + +  L + + E    + +
Sbjct: 449  QLTEDPWTQVPGKYP---------------VGQMITGTVTNITDFGLFVEVEEGIEGLVH 493

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI-SETETSSSKRAKKK 1058
             S       K P + +  G ++ A V+ +  S+   RL L +K    E  T ++  A+K 
Sbjct: 494  VSEISRKKIKSPSEIYKEGDTIEAKVIHV--SADERRLGLSIKQTKEEAPTVAAGGARKP 551

Query: 1059 SSYDVG 1064
             S+  G
Sbjct: 552  KSFGGG 557


>gi|444909560|ref|ZP_21229751.1| SSU ribosomal protein S1p [Cystobacter fuscus DSM 2262]
 gi|444720509|gb|ELW61293.1| SSU ribosomal protein S1p [Cystobacter fuscus DSM 2262]
          Length = 569

 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 150/362 (41%), Gaps = 32/362 (8%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  ++K G V+KG V  +  +GA +   GG+  L  +  MS   I  P + F VG E+  
Sbjct: 200 TLKNLKEGAVLKGVVKNLTDYGAFIDL-GGIDGLLHITDMSWGRIGHPSEMFNVGDEVRV 258

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL      +R+++  K+            Y   T      G +  I  +G F+    GV
Sbjct: 259 VVLKFDPAQERVSLGLKQIQEDPWHRADEKYPVGTR---VKGKVVSITDYGAFIEIEQGV 315

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
           +G    SE+      + PS M  VGQ V+  ++   P ++RI L        P  + ED 
Sbjct: 316 EGLVHVSEMSWTKRLKHPSKMLEVGQEVEAVVLDIDPKAKRIALGMKQIEQNPWTLLEDK 375

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKP 720
              +GS++ G +  VT   V V     G  +G     H++D      ++H   M    K 
Sbjct: 376 Y-PIGSVIKGQIRNVTDFGVFV-----GVEEGVDGLVHVSDISWTQRIKHPGEM---FKK 426

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGC 777
           G E  + +VL+ +  N     ++SL I   Q  P D  S   P  S V G V  + + G 
Sbjct: 427 GDEV-EAVVLNIDVEN----ERFSLGIKQLQPDPWDTLSERTPVGSRVKGKVTKVTDFGA 481

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV     + G    S+  + +  +        Q V   I+D+N++  ++ LS+K      
Sbjct: 482 FVEIEPGIEGLVHVSELKEERVENPRDVVQEAQDVEVKIIDINTQDRKVALSMKALIGEG 541

Query: 838 TD 839
            D
Sbjct: 542 ED 543



 Score = 47.8 bits (112), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G V ++T  G FI + + ++  V +S +S    ++ P K   +G+ V   VL ++P +
Sbjct: 295  VKGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKMLEVGQEVEAVVLDIDPKA 354

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            KR+ + +K  +    +  E        +G ++ GQI+ V  +G+F+ +E 
Sbjct: 355  KRIALGMKQIEQNPWTLLE----DKYPIGSVIKGQIRNVTDFGVFVGVEE 400



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 138/332 (41%), Gaps = 43/332 (12%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
           +L+ ++EG VL   VK++ D+G  +  G     G L   +++   G    P  +      
Sbjct: 200 TLKNLKEGAVLKGVVKNLTDYGAFIDLG--GIDGLLHITDMS--WGRIGHPSEMF----- 250

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL------VP-GMMVSTRVQSILENGVM 338
           ++    +VV L  DP    + V+  LK I  D         P G  V  +V SI + G  
Sbjct: 251 NVGDEVRVVVLKFDP--AQERVSLGLKQIQEDPWHRADEKYPVGTRVKGKVVSITDYGAF 308

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  T    +        ++V A +L +DP ++ + L +     NP
Sbjct: 309 IEIEQGVEGLVHVSEMSWTKRLKHPSKMLEVGQEVEAVVLDIDPKAKRIALGMKQIEQNP 368

Query: 394 Y-LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVR 451
           + LL ++ P   V  G I + +         G+ + +          V +SD++  + ++
Sbjct: 369 WTLLEDKYPIGSVIKGQIRNVTD-------FGVFVGVEE---GVDGLVHVSDISWTQRIK 418

Query: 452 KLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKP-GMVVKGKVI 507
              + +K+G  V   +L      E  + GI  L+   ++    T S+  P G  VKGKV 
Sbjct: 419 HPGEMFKKGDEVEAVVLNIDVENERFSLGIKQLQPDPWD----TLSERTPVGSRVKGKVT 474

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
            V  FGA V+   G++ L  +  + E  +  P
Sbjct: 475 KVTDFGAFVEIEPGIEGLVHVSELKEERVENP 506



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 151/368 (41%), Gaps = 54/368 (14%)

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF--P 1011
            + Q+++ K+E  K+L     +  +V+ + +    + L   +   G   ++D +  +   P
Sbjct: 190  EKQREEMKKETLKNLKEGAVLKGVVKNLTDYGAFIDLGGID---GLLHITDMSWGRIGHP 246

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             + F  G  V   V+    +    R+ L LK I E       RA +K  Y VG+ V+ ++
Sbjct: 247  SEMFNVGDEVRVVVLKFDPAQE--RVSLGLKQIQE---DPWHRADEK--YPVGTRVKGKV 299

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              I      ++   G  G +H++E++  K   +++     ++GQ V A ++     P  K
Sbjct: 300  VSITDYGAFIEIEQGVEGLVHVSEMSWTKR--LKHPSKMLEVGQEVEAVVL--DIDPKAK 355

Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            +  L    I+ +  T+ E             IG  + G +  V +    + +   +   +
Sbjct: 356  RIALGMKQIEQNPWTLLE---------DKYPIGSVIKGQIRNVTDFGVFVGVEEGVDGLV 406

Query: 1192 FILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ----DGIS 1242
             + D ++      P E+      F  G  V   VL+I+ E +   L ++  Q    D +S
Sbjct: 407  HVSDISWTQRIKHPGEM------FKKGDEVEAVVLNIDVENERFSLGIKQLQPDPWDTLS 460

Query: 1243 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1302
            ++T              G  V G+++K+     G  V+I P + G VH +ELK   V +P
Sbjct: 461  ERT------------PVGSRVKGKVTKVTDF--GAFVEIEPGIEGLVHVSELKEERVENP 506

Query: 1303 LSGYDEGQ 1310
                 E Q
Sbjct: 507  RDVVQEAQ 514



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 112/267 (41%), Gaps = 54/267 (20%)

Query: 1271 LSGVGGLVVQIGPHLYGRV-HFTELKNICVS--------DPLS-----GYDEGQFDPLSG 1316
            L G+ GL+  I    +GR+ H +E+ N+           DP       G  + Q DP   
Sbjct: 226  LGGIDGLL-HITDMSWGRIGHPSEMFNVGDEVRVVVLKFDPAQERVSLGLKQIQEDPWHR 284

Query: 1317 YDE----GQFVKCKV---------LEISRTVRGTFHV-ELSLRSSLDGMS-----STNSS 1357
             DE    G  VK KV         +EI + V G  HV E+S    L   S          
Sbjct: 285  ADEKYPVGTRVKGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKMLEVGQEVE 344

Query: 1358 DLSTDVDTPGK-------HLEK-----IEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDA 1404
             +  D+D   K        +E+     +ED  P   +++G ++NVT  G F+ +   +D 
Sbjct: 345  AVVLDIDPKAKRIALGMKQIEQNPWTLLEDKYPIGSVIKGQIRNVTDFGVFVGVEEGVDG 404

Query: 1405 KVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
             V +S++S    ++ P + F  G  V   VL+++  ++R  + +K            + L
Sbjct: 405  LVHVSDISWTQRIKHPGEMFKKGDEVEAVVLNIDVENERFSLGIK-----QLQPDPWDTL 459

Query: 1464 SN-LHVGDIVIGQIKRVESYGLFITIE 1489
            S    VG  V G++ +V  +G F+ IE
Sbjct: 460  SERTPVGSRVKGKVTKVTDFGAFVEIE 486


>gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
 gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
          Length = 402

 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATANLSEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S D+
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSDN 362



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   +LS  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATANLSEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1440 SKRVEVTLKTSDSRTASQS 1458
             +R+ +++K +DS  +S +
Sbjct: 344  DRRISLSIKAADSNASSDN 362



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 34/317 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  ++ S    
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLSE--- 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLKQSCCSST 838
              RI+LS+K +  +++
Sbjct: 343 SDRRISLSIKAADSNAS 359



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     +NL  GD+  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TANLSEGDVFEGEVKSLTNFGAFVEV 302



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 144/371 (38%), Gaps = 59/371 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R E   D   +   +   G   K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGVITRREYTSDRNADLRDLVKPGDKFKALVLRRAGGDKE-NGEFFFSVTRLKEREAY 102

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+    +P   +++   + + +K  I  
Sbjct: 103 DKLQKDFEEGKAIEGTVTSSVRGGLLVDVGTRGF----LPASLISNR--YVSDLKPYIGK 156

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
             +  ++  +D   + L+LS K  L+   ++   D  AS +    V+ G V  +   G F
Sbjct: 157 TMKL-KITEIDPNKNRLILSHK-DLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  +G + G    S+         S     GQ V+  ++ ++++  RI+LS+KQ+  S  
Sbjct: 215 ID-VGGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSP- 272

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
                      E+  A L                  G V EG+V    +FG  V  E   
Sbjct: 273 ----------FEQATANLSE----------------GDVFEGEVKSLTNFGAFV--EVAD 304

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   +++   V+        G  ++  +L++  ++R + LS+K         A+S
Sbjct: 305 GIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA----DSNASS 360

Query: 952 NRQAQKKKRKR 962
           +    + +R R
Sbjct: 361 DNHNSRPRRSR 371


>gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1]
 gi|423318778|ref|ZP_17296655.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
 gi|423321585|ref|ZP_17299456.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
 gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1]
 gi|405591865|gb|EKB65324.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
 gi|405594274|gb|EKB67691.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
          Length = 402

 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAADSNAS 359



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 34/199 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVVEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLK---V 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPS 343

Query: 1440 SKRVEVTLKTSDSRTASQS 1458
             +R+ +++K +DS  +S++
Sbjct: 344  DRRISLSIKAADSNASSEN 362



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 34/317 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  D     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEDGNAVEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLIVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             +  G V ++   G FV     + G    S+  +      S    VGQSV+  +L+++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDP 342

Query: 822 ETGRITLSLKQSCCSST 838
              RI+LS+K +  +++
Sbjct: 343 SDRRISLSIKAADSNAS 359



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     ++L+ GDI  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDIFEGEVKSLTNFGAFVEV 302


>gi|163848026|ref|YP_001636070.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525913|ref|YP_002570384.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669315|gb|ABY35681.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449792|gb|ACM54058.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 399

 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 8/174 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G V  G V +V  FG  V   GG   L  L  +S   +  PG+  KVG ++   +
Sbjct: 224 TSLREGDVRDGVVSSVCDFGVFVDI-GGADGLVHLSEISWSRVKHPGEVLKVGDKVKVAI 282

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L +  + KRI ++ K+T  +    +   Y       I  G IT++   G F R  +GV+G
Sbjct: 283 LNIDHERKRIALSIKRTQSEPWTRVAERYQLGQ---IVEGTITQLASFGAFARIEDGVEG 339

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSE 663
               SE+G +    P  +   GQVV+ RI+   PA +R+ LS  +  +PT  SE
Sbjct: 340 LIHISEMGDERIQHPREVLSEGQVVQARIIRIDPARKRMGLSLRLHAEPTESSE 393



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 38/243 (15%)

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V+ IN+ +   RL+L   Q  +  +T +   D + T + EGD+  G +S +     G+ V
Sbjct: 193  VIEINRNRN--RLILSERQALV--ETRESKKDELLTSLREGDVRDGVVSSVCDF--GVFV 246

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
             IG    G VH +E+    V  P      G+   +     G  VK  +L I    +    
Sbjct: 247  DIGG-ADGLVHLSEISWSRVKHP------GEVLKV-----GDKVKVAILNIDHERK---R 291

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + LS++ +         S+  T V          E      IV+G +  + S G F  + 
Sbjct: 292  IALSIKRT--------QSEPWTRV---------AERYQLGQIVEGTITQLASFGAFARIE 334

Query: 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
              ++  + +S + D  ++ P +    G++V  R++ ++P  KR+ ++L+     T S  +
Sbjct: 335  DGVEGLIHISEMGDERIQHPREVLSEGQVVQARIIRIDPARKRMGLSLRLHAEPTESSEK 394

Query: 1460 INN 1462
              N
Sbjct: 395  EEN 397


>gi|255322491|ref|ZP_05363636.1| S1 RNA binding domain protein [Campylobacter showae RM3277]
 gi|255300399|gb|EET79671.1| S1 RNA binding domain protein [Campylobacter showae RM3277]
          Length = 556

 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/552 (21%), Positives = 219/552 (39%), Gaps = 83/552 (15%)

Query: 424 GLLLDIPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
           G+++DI    V       +   + IS++ +E     E K+K G  ++V I G R  + + 
Sbjct: 39  GIIVDIKGDEVFVNVGKKSEGILNISEIQDE---NGELKFKAGDTIKVVITGSRGGKPIV 95

Query: 478 T--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
           +    L+    +  + ++++     +   K+I  +  G + Q   G++   P      F+
Sbjct: 96  SHKKALRKEKVKAYIDSYNEENQD-IFDVKIIGKNKGGFVAQNSDGIEFFLPRSQGG-FK 153

Query: 536 IVKP--GKKFKVGAELVFRVLGVK--SKRITVTHKKTL---VKSKLAILSSYAEATDRLI 588
                 GK FKV      +V+ +    + I V+ KK L    K K  ++S+ AE TD  +
Sbjct: 154 DANAVVGKSFKV------KVIKIDKDEQSIIVSRKKLLDEDRKKKREVISAVAENTD--V 205

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G + KI  +G FV    GV G    SE+       P S+Y  G  V  +++      +
Sbjct: 206 IEGVVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGSIYKEGDKVLVKVIKYDNEKK 264

Query: 649 RINLSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            ++LS         E+  D + +G  +   V  + P    V +       G      L  
Sbjct: 265 HLSLSIKAATPDPWEEIKDGLDVGDTIKVTVSNIEPYGAFVDL-------GNDIEGFL-- 315

Query: 707 HLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
           H+   +  K++  P      G E D +++ +D +   L +S K  L     +  +     
Sbjct: 316 HISEISWDKNIKNPKDHISEGEELDVEVIEIDAKDRRLRVSLKNLLKKPFDEFKA---QF 372

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V ++   G FVR +G + G      A   +       + VG  V   I+ +
Sbjct: 373 KEGDVTKGVVTSVTNFGAFVR-IGAVEGLLHNEDASWDRNDKCKDLFKVGDEVEVKIIKI 431

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           +S   +I+LS K    S   A                           + + F +G ++ 
Sbjct: 432 DSNEQKISLSQKDLKQSPVQA---------------------------YAKKFNVGDIVT 464

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV---IQAAILDVAKAERLVDL 936
           GK+ +  DFGV V   ++ D    I    L G + E+ ++   I+AAI  + + +  + L
Sbjct: 465 GKIRDIKDFGVFVELGDNVD--ALIRKEDLGGVSAENLNINDNIEAAIAFIDEKKNRIRL 522

Query: 937 SLKTVFIDRFRE 948
           S++ +   + RE
Sbjct: 523 SVRRLARQKERE 534



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 121/278 (43%), Gaps = 43/278 (15%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +GK+    V+ I+K+++ + +  +   D    K  ++    +       D++ G + KI 
Sbjct: 159  VGKSFKVKVIKIDKDEQSIIVSRKKLLDEDRKKKREV----ISAVAENTDVIEGVVKKIT 214

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
            +   G+ V +G  + G VH++E+           Y +G  +P S Y EG  V  KV++  
Sbjct: 215  TY--GMFVDVGG-VDGLVHYSEI----------SY-KGPVNPGSIYKEGDKVLVKVIKYD 260

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1391
               +   H+ LS++++                 TP    E  + L     ++  V N+  
Sbjct: 261  NEKK---HLSLSIKAA-----------------TPDPWEEIKDGLDVGDTIKVTVSNIEP 300

Query: 1392 KGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
             G F+ L   ++  + +S +S D  +++P+     G+ +   V+ ++   +R+ V+LK  
Sbjct: 301  YGAFVDLGNDIEGFLHISEISWDKNIKNPKDHISEGEELDVEVIEIDAKDRRLRVSLKNL 360

Query: 1451 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              +   + +    +    GD+  G +  V ++G F+ I
Sbjct: 361  LKKPFDEFK----AQFKEGDVTKGVVTSVTNFGAFVRI 394


>gi|408410414|ref|ZP_11181631.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
 gi|409350333|ref|ZP_11233493.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
 gi|407875408|emb|CCK83437.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
 gi|407877499|emb|CCK85551.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
          Length = 401

 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  +  FGA V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTQFGAFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRL 587
            +S   + KP    KVG ++  +V+G+ +   RI+++ K+T         S + +AT  L
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTE-------PSPFEQATANL 279

Query: 588 ----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               I  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++ 
Sbjct: 280 NEGDIIEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNV 339

Query: 644 IPASRRINLSF 654
            P+ RRI+LS 
Sbjct: 340 DPSERRISLSI 350



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 38/248 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKTIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
                 G  V IG  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  TQF--GAFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---VGQDVKVKVIGI 253

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                                 +  N   LS     P    +   +L+   I++G VK++T
Sbjct: 254  D--------------------NDRNRISLSIKQTEPSPFEQATANLNEGDIIEGEVKSLT 293

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            + G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+V+P  +R+ +++K +
Sbjct: 294  NFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQA 353

Query: 1451 DSRTASQS 1458
            D   AS S
Sbjct: 354  DPENASSS 361



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 151/367 (41%), Gaps = 41/367 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVKPGKKFKVGA 547
           +VKPG +V   V++V+     V   G GV+ +      +        E VKPG  FK   
Sbjct: 16  EVKPGDIVDVNVLSVEDGQINVGVQGAGVEGVITRRDFTNDRSVNLREAVKPGDTFKA-- 73

Query: 548 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
             V R  G   +        T VK + A      +  +     G +T   + G  V    
Sbjct: 74  -YVVRRAGGDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-- 130

Query: 608 GVQGFAPRSELG------LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPT 659
           G +GF P S +       L P        ++G+ +K +I    PA  R+ LS   +++  
Sbjct: 131 GTRGFLPASLISNRFVSDLKP--------YIGKTIKVKITEIDPAKNRLILSHKELIEEE 182

Query: 660 RVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
           R    + V     +G +V G V  +T     V +   G   G +    ++   +H     
Sbjct: 183 REQAFENVASQLVVGDVVEGRVSRLTQFGAFVDI---GGVDGLVHISEIS--YKHVDKPS 237

Query: 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
            V+K G +   +++ +DN+ + + LS K +  +  +Q     ++++   ++ G V ++  
Sbjct: 238 DVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQA---TANLNEGDIIEGEVKSLTN 294

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            G FV     + G    S+  +      S    VGQ V+  +L+V+    RI+LS+KQ+ 
Sbjct: 295 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQAD 354

Query: 835 CSSTDAS 841
             +  +S
Sbjct: 355 PENASSS 361



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 44/214 (20%)

Query: 1306 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS--SDLS--- 1360
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L     +N   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1361 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1394
                    T++D P K      H E IE+            L    +V+G V  +T  G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGA 212

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP 271

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              Q+     +NL+ GDI+ G++K + ++G F+ +
Sbjct: 272  FEQA----TANLNEGDIIEGEVKSLTNFGAFVEV 301



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 143/366 (39%), Gaps = 55/366 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D           G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLREAVKPGDTFKAYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  + + G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGAFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP-- 271

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                     E+  A L                  G +IEG+V    +FG   +F E +D
Sbjct: 272 ---------FEQATANLNE----------------GDIIEGEVKSLTNFG---AFVEVAD 303

Query: 900 -VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   +++   V+        G  ++  +L+V  +ER + LS+K    +    +N 
Sbjct: 304 GIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQADPENASSSND 363

Query: 952 NRQAQK 957
             +A++
Sbjct: 364 RPRARR 369


>gi|366086021|ref|ZP_09452506.1| 30S ribosomal protein S1 [Lactobacillus zeae KCTC 3804]
          Length = 437

 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 9/190 (4%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            I++AS  E      + ++PG VV+GKV  + +FGA V   GGV  L  +  +S   + K
Sbjct: 183 AIVEASKAEARKEIFAKIQPGDVVEGKVARLTNFGAFVDL-GGVDGLVHVSEISFDHVDK 241

Query: 539 PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P    KVG E+  +VL V     RI+++ K TL +   +I       +   +  G + ++
Sbjct: 242 PSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDSIEEKAPAGS---VLTGTVKRL 298

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
              G FV  + GV+G    S++  +    P+ +   GQ VK +++S  P + R+ LS   
Sbjct: 299 TTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDAHRLALSIKA 358

Query: 657 ---KPTRVSE 663
              +P   SE
Sbjct: 359 LQDRPAGASE 368



 Score = 47.8 bits (112), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            + P  +V+G V  +T+ G F+ L   +D  V +S +S  +V+ P     +G+ +  +VL+
Sbjct: 200  IQPGDVVEGKVARLTNFGAFVDLG-GVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLN 258

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V+P   R+ +++K +  +     E         G ++ G +KR+ ++G F+ +
Sbjct: 259  VDPDRNRISLSIKATLPQPWDSIE----EKAPAGSVLTGTVKRLTTFGAFVEV 307



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 36/204 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  GD+V G++++ L+  G  V   G  + G VH +E+    V  P         D L  
Sbjct: 200  IQPGDVVEGKVAR-LTNFGAFVDLGG--VDGLVHVSEISFDHVDKP--------SDVLK- 247

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               GQ +K KVL +         + LS++++L                   +  + IE+ 
Sbjct: 248  --VGQEIKVKVLNVDPDRN---RISLSIKATL------------------PQPWDSIEEK 284

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P   ++ G VK +T+ G F+ +   ++  V +S +S  +V +P      G+ V  +VLS
Sbjct: 285  APAGSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLS 344

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSE 1459
            V+P + R+ +++K    R A  SE
Sbjct: 345  VDPDAHRLALSIKALQDRPAGASE 368



 Score = 40.4 bits (93), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 142/349 (40%), Gaps = 27/349 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           VK G  VK  V+AV+    IV   G GV+ + P+  +S   I       KVG +L   VL
Sbjct: 23  VKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELSTQPIDDIHDVAKVGDKLDLVVL 82

Query: 555 GVKSK-----RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
               K     +  ++ ++   +     + +  EA + +     +T + K G  V    GV
Sbjct: 83  STVDKDKENGQFLLSKRRLEAQKVWKEIQAKYEAGETITAP--VTSVVKGGLVVNA--GV 138

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDD 665
           +GF P S +  D   E  + Y  G+ ++ +I+    +  R+ LS             ++ 
Sbjct: 139 RGFVPAS-MVEDHFVEDLNQYK-GKELEFKIIEIELSENRLILSHRAIVEASKAEARKEI 196

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
             K+  G +V G V  +T     V +   G   G +    ++   +H      V+K G E
Sbjct: 197 FAKIQPGDVVEGKVARLTNFGAFVDL---GGVDGLVHVSEIS--FDHVDKPSDVLKVGQE 251

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              ++L +D + + + LS K +L      +   A      SV+ G V  +   G FV   
Sbjct: 252 IKVKVLNVDPDRNRISLSIKATLPQPWDSIEEKAP---AGSVLTGTVKRLTTFGAFVEVF 308

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             + G    S+      A  +     GQ V+  +L V+ +  R+ LS+K
Sbjct: 309 PGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDAHRLALSIK 357


>gi|358638543|dbj|BAL25840.1| 30S ribosomal protein S1 [Azoarcus sp. KH32C]
          Length = 568

 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 155/366 (42%), Gaps = 41/366 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K G VVKG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +V
Sbjct: 196 ANLKEGTVVKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGDEIEAKV 254

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      + I   Y + T RL   G +T I  +G FV    G++G
Sbjct: 255 LKFDQEKNRVSLGLKQLGEDPWVGIARRYPQGT-RLF--GKVTNITDYGAFVEVEQGIEG 311

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    P+ +  +G  V+  I+      RRI+L     M  P     DD  
Sbjct: 312 LVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPW----DDFA 367

Query: 668 ---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGY 722
              K G  V G +  +T   V +     G   G     HL+D     +  ++V   K G 
Sbjct: 368 INHKKGDKVRGQIKSITDFGVFI-----GLDGGIDGLVHLSDLSWSDSGEEAVRRFKKGD 422

Query: 723 EFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIET 775
           E + + L +D E   + L  K        QL  D      A+H   NS+V G V ++   
Sbjct: 423 EVEAVVLAIDVERERISLGVK--------QLEGDPFTNFIATH-EKNSLVRGTVKSVDAR 473

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-QSC 834
           G  +     + G+   S+A   +  DL+     G  V   I++V+ +T  I LS++ +  
Sbjct: 474 GAVIALNEEVEGYLRASEAAAHRVDDLTTVLKEGDEVELMIINVDRKTRSINLSIRAKDQ 533

Query: 835 CSSTDA 840
              +DA
Sbjct: 534 AEQSDA 539



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 1364 DTPGKHLEKI-EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1422
            +T G+  EK+  +L    +V+G VKN+T  G F+ L   +D  + +++L+   V  P + 
Sbjct: 185  ETMGEEREKLLANLKEGTVVKGVVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEV 243

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
              +G  +  +VL  +    RV + LK    +      +        G  + G++  +  Y
Sbjct: 244  LSVGDEIEAKVLKFDQEKNRVSLGLK----QLGEDPWVGIARRYPQGTRLFGKVTNITDY 299

Query: 1483 GLFITIE 1489
            G F+ +E
Sbjct: 300  GAFVEVE 306


>gi|374814102|ref|ZP_09717839.1| cytidylate kinase/30S ribosomal protein S1 [Treponema primitia
           ZAS-1]
          Length = 807

 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G  V G V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V+ +  
Sbjct: 437 GDDVSGAVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIRLKVIRIDP 495

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +RI ++ K       +     Y    D  I  G +TK+   G FV    G++G    S
Sbjct: 496 QERRINLSLKHFTDDPWVHFEDKY-HVND--IIKGKVTKLTDFGAFVELEEGIEGLVHIS 552

Query: 617 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLGSLV 673
           E       + P  +  +G   +C I+     + R++L    + P   +E +    +G+ +
Sbjct: 553 EFSWVKKIQKPEEVLAIGDDTECMILGYDLQAGRVSLGLKQVTPNPWTEIEAKYPVGTRL 612

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-----QLL 728
           +  V  +T NA     + +G   G +       H +  +  K +  PG EF      +L+
Sbjct: 613 TRKVAKIT-NAGAFIELEEGID-GFL-------HGDDISWTKKIKHPGSEFSVGQEIELM 663

Query: 729 VL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           V+  D E  N+ L  K     S     S AS   P S+V G V ++ + G FVR  G + 
Sbjct: 664 VISVDAEDKNIRLGIKQL---SEDPWQSFASSYKPGSLVEGEVSSVTDFGVFVRVPGGIE 720

Query: 787 GFAPRSKAVDGQRAD---LSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G   +S   + +  D   L K Y VG  +++ +L++  +  ++  S+K
Sbjct: 721 GLIHKSNLPENREDDPDELLKKYNVGDKIKAVVLEMQPDKQKVAFSIK 768



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 122/281 (43%), Gaps = 25/281 (8%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           I+D++   V + +   K+G  +R++++     E      LK    +  V          +
Sbjct: 465 INDMSWGHVTRPKDFVKKGQEIRLKVIRIDPQERRINLSLKHFTDDPWVHFEDKYHVNDI 524

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAELVFRVLG-- 555
           +KGKV  +  FGA V+   G++ L    H+SEF    +I KP +   +G +    +LG  
Sbjct: 525 IKGKVTKLTDFGAFVELEEGIEGLV---HISEFSWVKKIQKPEEVLAIGDDTECMILGYD 581

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +++ R+++  K+        I + Y   T RL     + KI   G F+    G+ GF   
Sbjct: 582 LQAGRVSLGLKQVTPNPWTEIEAKYPVGT-RLTRK--VAKITNAGAFIELEEGIDGFLHG 638

Query: 616 SELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------VK 668
            ++      + P S + VGQ ++  ++S     + I L       ++SED         K
Sbjct: 639 DDISWTKKIKHPGSEFSVGQEIELMVISVDAEDKNIRLGI----KQLSEDPWQSFASSYK 694

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
            GSLV G V  VT   V V V   G  +G I   +L ++ E
Sbjct: 695 PGSLVEGEVSSVTDFGVFVRV--PGGIEGLIHKSNLPENRE 733



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 131/313 (41%), Gaps = 34/313 (10%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV------KVGDIYDQSKVVRV 419
           +++  +++ +DP  R + L+L     +P++  +     HV      KV  + D    V +
Sbjct: 484 QEIRLKVIRIDPQERRINLSLKHFTDDPWV--HFEDKYHVNDIIKGKVTKLTDFGAFVEL 541

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 479
           + G+  L+ I     S  ++V       ++++K E+    G      ILG+    G  + 
Sbjct: 542 EEGIEGLVHI-----SEFSWV-------KKIQKPEEVLAIGDDTECMILGYDLQAGRVSL 589

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK- 538
            LK           +    G  +  KV  + + GA ++   G+        +S  + +K 
Sbjct: 590 GLKQVTPNPWTEIEAKYPVGTRLTRKVAKITNAGAFIELEEGIDGFLHGDDISWTKKIKH 649

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           PG +F VG E+   V+ V  + K I +  K+       +  SSY   +   +  G ++ +
Sbjct: 650 PGSEFSVGQEIELMVISVDAEDKNIRLGIKQLSEDPWQSFASSYKPGS---LVEGEVSSV 706

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLS 653
              G FVR   G++G   +S L  +   +P  +   Y+VG  +K  ++   P  +++  S
Sbjct: 707 TDFGVFVRVPGGIEGLIHKSNLPENREDDPDELLKKYNVGDKIKAVVLEMQPDKQKVAFS 766

Query: 654 FMMKPTRVSEDDL 666
                 +V  D+L
Sbjct: 767 IKDYQKKVQRDEL 779



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P  +
Sbjct: 440  VSGAVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGQEIRLKVIRIDPQER 498

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK           ++     HV DI+ G++ ++  +G F+ +E
Sbjct: 499  RINLSLK----HFTDDPWVHFEDKYHVNDIIKGKVTKLTDFGAFVELE 542



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 129/330 (39%), Gaps = 56/330 (16%)

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
            GQ +R  ++ ++ +  RI LSLK      TD  ++  HF  E+K                
Sbjct: 483  GQEIRLKVIRIDPQERRINLSLKHF----TDDPWV--HF--EDK---------------- 518

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQA 922
               + +  +I+GKV +  DFG  V  EE      H   + ++   Q     +  G   + 
Sbjct: 519  ---YHVNDIIKGKVTKLTDFGAFVELEEGIEGLVHISEFSWVKKIQKPEEVLAIGDDTEC 575

Query: 923  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
             IL        V L LK V  + + E              EA   +G   T   + +I  
Sbjct: 576  MILGYDLQAGRVSLGLKQVTPNPWTEI-------------EAKYPVGTRLT-RKVAKITN 621

Query: 983  ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
                +      +  +    +S     K P  +F  GQ +   V+++ +     RL +  K
Sbjct: 622  AGAFIELEEGIDGFLHGDDISWTKKIKHPGSEFSVGQEIELMVISVDAEDKNIRLGI--K 679

Query: 1043 AISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
             +SE    S       SSY  GSLV+ E++ +    + ++   G  G IH + + +++ +
Sbjct: 680  QLSEDPWQSFA-----SSYKPGSLVEGEVSSVTDFGVFVRVPGGIEGLIHKSNLPENRED 734

Query: 1103 VVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
              + L   + +G  + A ++    +PD +K
Sbjct: 735  DPDELLKKYNVGDKIKAVVL--EMQPDKQK 762



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 154/414 (37%), Gaps = 72/414 (17%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK- 559
           +V+G +  +   G  V    GV+A  P+      ++ KP K  ++        L    K 
Sbjct: 350 MVEGTIEKLVKGGYDVDLGAGVRAFLPISQSDAQKVDKPEKLLELKTNFYVERLYSDGKV 409

Query: 560 RITVTHKKTL---VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            I V  +K L   ++ K        +  D +   G +      G F+    G  G    +
Sbjct: 410 NIVVNRRKWLEEEIEQKRKDFFEKTQIGDDV--SGAVKSFTSFGAFIDL-GGFDGLLHIN 466

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLV 673
           ++       P      GQ ++ +++   P  RRINLS   F   P  V  +D   +  ++
Sbjct: 467 DMSWGHVTRPKDFVKKGQEIRLKVIRIDPQERRINLSLKHFTDDPW-VHFEDKYHVNDII 525

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
            G V  +T     V  + +G  +G +       H+   + +K + KP    +++L + ++
Sbjct: 526 KGKVTKLTDFGAFVE-LEEGI-EGLV-------HISEFSWVKKIQKP----EEVLAIGDD 572

Query: 734 SSNLLLSAKYSL------INSAQQLPSDASHIHPNSVVHGY----VCNIIETGCFVRFLG 783
           +  ++L   Y L      +   Q  P+  + I     V       V  I   G F+    
Sbjct: 573 TECMILG--YDLQAGRVSLGLKQVTPNPWTEIEAKYPVGTRLTRKVAKITNAGAFIELEE 630

Query: 784 RLTGF-----APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + GF        +K +    ++ S    VGQ +   ++ V++E   I L +KQ      
Sbjct: 631 GIDGFLHGDDISWTKKIKHPGSEFS----VGQEIELMVISVDAEDKNIRLGIKQ------ 680

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                    L E+      SS            +  GS++EG+V    DFGV V
Sbjct: 681 ---------LSEDPWQSFASS------------YKPGSLVEGEVSSVTDFGVFV 713


>gi|237653696|ref|YP_002890010.1| 30S ribosomal protein S1 [Thauera sp. MZ1T]
 gi|237624943|gb|ACR01633.1| ribosomal protein S1 [Thauera sp. MZ1T]
          Length = 567

 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 153/356 (42%), Gaps = 40/356 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K G V+KG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +V
Sbjct: 194 ANLKEGTVIKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGDEIEAKV 252

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      + I   Y + T RL   G +T I  +G FV    G++G
Sbjct: 253 LKFDQEKNRVSLGLKQLGEDPWVGISRRYPQGT-RLF--GKVTNITDYGAFVEVEQGIEG 309

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    P+ +  +G  V+  I+      RRI+L     M  P     DD  
Sbjct: 310 LVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPW----DDFA 365

Query: 668 ---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGY 722
              K G  V G +  +T   V +     G   G     HL+D     +   +V   K G 
Sbjct: 366 INHKKGDKVRGQIKSITDFGVFI-----GLEGGIDGLVHLSDLSWSESGEDAVRRFKKGD 420

Query: 723 EFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIET 775
           E + + L +D E   + L  K        QL  D      A+H   NS+V G V ++   
Sbjct: 421 EVEAVVLAIDVERERISLGIK--------QLEGDPYTNFIATH-EKNSLVRGTVKSVEAR 471

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G  +     + G+   S+A   +  DL+  +  G  V + +++V+ +T  I+LS++
Sbjct: 472 GAVISLGDDVEGYLRASEAAPHRVDDLTTMFKEGDEVEALVINVDRKTRSISLSIR 527


>gi|319892466|ref|YP_004149341.1| 30S ribosomal protein S1p [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162162|gb|ADV05705.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 394

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D      IP++ +ST     I D ++ E R LE K +E    + R
Sbjct: 113 EAKVTEVVKG-GLVVDVGQRGFIPASLISTD---YIEDFSDYEGRVLELKVEELEPEKNR 168

Query: 467 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E       KA   +        +K G V++GKV  + +FGA +   GGV  L
Sbjct: 169 VILSRKAVEAEENEKKKAELLQS-------IKAGDVIEGKVARLTNFGAFIDL-GGVDGL 220

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   +G  +  +V  V+  S+R++++ K TL      I   Y+E 
Sbjct: 221 VHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSEG 280

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               I  G + ++   G FV   +G+QG    SE+       P  +   GQ V+ +I+  
Sbjct: 281 D---IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGI 337

Query: 644 IPASRRINLSF 654
            P   RI+LS 
Sbjct: 338 NPEEERISLSI 348



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  + G+V  ++    +V   GG    + P+  +S + +    +  KVG E+   
Sbjct: 12  NDIKEGDKITGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAY 71

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K KL    SYA   ++L         +T++ K G  V    G
Sbjct: 72  VTKIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV--G 129

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 666
            +GF P S +  D   E  S Y  G+V++ ++    P   R+ LS   K     E++   
Sbjct: 130 QRGFIPASLISTDY-IEDFSDYE-GRVLELKVEELEPEKNRVILS--RKAVEAEENEKKK 185

Query: 667 ------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                 +K G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 186 AELLQSIKAGDVIEGKVARLTNFGAFIDL---GGVDGLVHVSELSH--EHVKSPEEVVSI 240

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L +  + +    S      +V G V  +   G FV
Sbjct: 241 GDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSE---GDIVEGKVMRLASFGAFV 297

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
                L G    S+          +    GQ+V+  IL +N E  RI+LS+K +
Sbjct: 298 EIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            K  E ++ +    +++G V  +T+ G FI L   +D  V +S LS  +V+SPE+   IG 
Sbjct: 184  KKAELLQSIKAGDVIEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKSPEEVVSIGD 242

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  +V SVE  S+RV +++K  D+  +    I        GDIV G++ R+ S+G F+ 
Sbjct: 243  TVKVKVRSVEQDSERVSLSIK--DTLPSPFETIQ--EKYSEGDIVEGKVMRLASFGAFVE 298

Query: 1488 I 1488
            I
Sbjct: 299  I 299



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 158/376 (42%), Gaps = 79/376 (21%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ IED   ++H     + G +P + L+    EN+   VK G  +   V 
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAYVT 73

Query: 285 -----------------RSIDRTRKVVYLSS---DPDTVSKCVTKDLKG-ISIDL----L 319
                            R ++  +   YL     + +T+   VT+ +KG + +D+     
Sbjct: 74  KIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDVGQRGF 133

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           +P  ++ST           +   + + G V    ++   P  N             R++ 
Sbjct: 134 IPASLISTD---------YIEDFSDYEGRVLELKVEELEPEKN-------------RVIL 171

Query: 380 VDPTSRAVGLTLN----PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
              + +AV    N      LL +      +K GD+  + KV R+    G  +D+      
Sbjct: 172 ---SRKAVEAEENEKKKAELLQS------IKAGDVI-EGKVARL-TNFGAFIDLGGVD-- 218

Query: 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK---ASAFEGLVFT 492
               V +S+++ E V+  E+    G  V+V++          +  +K    S FE +   
Sbjct: 219 --GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEK 276

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +S+   G +V+GKV+ + SFGA V+   G++ L  +  +S   I  PG+  + G  +  +
Sbjct: 277 YSE---GDIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVK 333

Query: 553 VLGV--KSKRITVTHK 566
           +LG+  + +RI+++ K
Sbjct: 334 ILGINPEEERISLSIK 349



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 112/294 (38%), Gaps = 49/294 (16%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 725
           +K G  ++G V  +    VVV++    Y+ G IP   L+  H+E+A     V+K G E  
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHINGGKYN-GIIPISQLSTYHVENAN---EVVKVGDEIG 69

Query: 726 QLLVL-----DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +       +NE+ + +LS +   +   Q        +  N  +   V  +++ G  V 
Sbjct: 70  AYVTKIEVDEENETGSYILSKRK--LEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVD 127

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              R  GF P S        D S   Y G+ +   + ++  E  R+ LS K       + 
Sbjct: 128 VGQR--GFIPASLISTDYIEDFSD--YEGRVLELKVEELEPEKNRVILSRKAVEAEENE- 182

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                    ++K  +LQS K              G VIEGKV    +FG  +       V
Sbjct: 183 ---------KKKAELLQSIK-------------AGDVIEGKVARLTNFGAFIDL---GGV 217

Query: 901 YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            G +   +L+   V+S       G  ++  +  V +    V LS+K      F 
Sbjct: 218 DGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFE 271


>gi|386319260|ref|YP_006015423.1| 30S ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
 gi|323464431|gb|ADX76584.1| ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
          Length = 394

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D      IP++ +ST     I D ++ E R LE K +E    + R
Sbjct: 113 EAKVTEVVKG-GLVVDVGQRGFIPASLISTD---YIEDFSDYEGRVLELKVEELEPEKNR 168

Query: 467 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E       KA   +        +K G V++GKV  + +FGA +   GGV  L
Sbjct: 169 VILSRKAVEAEENEKKKAELLQS-------IKAGDVIEGKVARLTNFGAFIDL-GGVDGL 220

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   +G  +  +V  V+  S+R++++ K TL      I   Y+E 
Sbjct: 221 VHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSEG 280

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               I  G + ++   G FV   +G+QG    SE+       P  +   GQ V+ +I+  
Sbjct: 281 D---IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGI 337

Query: 644 IPASRRINLSF 654
            P   RI+LS 
Sbjct: 338 NPEEERISLSI 348



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  + G+V  ++    +V   GG    + P+  +S + +    +  KVG E+   
Sbjct: 12  NDIKEGDKITGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAY 71

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K KL    SYA   ++L         +T++ K G  V    G
Sbjct: 72  VTKIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV--G 129

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 666
            +GF P S +  D   E  S Y  G+V++ ++    P   R+ LS   K     E++   
Sbjct: 130 QRGFIPASLISTDY-IEDFSDYE-GRVLELKVEELEPEKNRVILS--RKAVEAEENEKKK 185

Query: 667 ------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                 +K G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 186 AELLQSIKAGDVIEGKVARLTNFGAFIDL---GGVDGLVHVSELSH--EHVKSPEEVVSI 240

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L +  + +    S      +V G V  +   G FV
Sbjct: 241 GDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSE---GDIVEGKVMRLASFGAFV 297

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
                L G    S+          +    GQ+V+  IL +N E  RI+LS+K +
Sbjct: 298 EIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            K  E ++ +    +++G V  +T+ G FI L   +D  V +S LS  +V+SPE+   IG 
Sbjct: 184  KKAELLQSIKAGDVIEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKSPEEVVSIGD 242

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  +V SVE  S+RV +++K  D+  +    I        GDIV G++ R+ S+G F+ 
Sbjct: 243  TVKVKVRSVEQDSERVSLSIK--DTLPSPFETIQ--EKYSEGDIVEGKVMRLASFGAFVE 298

Query: 1488 I 1488
            I
Sbjct: 299  I 299



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 158/376 (42%), Gaps = 79/376 (21%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ IED   ++H     + G +P + L+    EN+   VK G  +   V 
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAYVT 73

Query: 285 -----------------RSIDRTRKVVYLSS---DPDTVSKCVTKDLKG-ISIDL----L 319
                            R ++  +   YL     + +T+   VT+ +KG + +D+     
Sbjct: 74  KIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDVGQRGF 133

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           +P  ++ST           +   + + G V    ++   P  N             R++ 
Sbjct: 134 IPASLISTD---------YIEDFSDYEGRVLELKVEELEPEKN-------------RVIL 171

Query: 380 VDPTSRAVGLTLN----PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
              + +AV    N      LL +      +K GD+  + KV R+    G  +D+      
Sbjct: 172 ---SRKAVEAEENEKKKAELLQS------IKAGDVI-EGKVARL-TNFGAFIDLGGVD-- 218

Query: 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK---ASAFEGLVFT 492
               V +S+++ E V+  E+    G  V+V++          +  +K    S FE +   
Sbjct: 219 --GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEK 276

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +S+   G +V+GKV+ + SFGA V+   G++ L  +  +S   I  PG+  + G  +  +
Sbjct: 277 YSE---GDIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVK 333

Query: 553 VLGV--KSKRITVTHK 566
           +LG+  + +RI+++ K
Sbjct: 334 ILGINPEEERISLSIK 349



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 112/294 (38%), Gaps = 49/294 (16%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 725
           +K G  ++G V  +    VVV+V    Y+ G IP   L+  H+E+A     V+K G E  
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHVNGGKYN-GIIPISQLSTYHVENAN---EVVKVGDEIG 69

Query: 726 QLLVL-----DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +       +NE+ + +LS +   +   Q        +  N  +   V  +++ G  V 
Sbjct: 70  AYVTKIEVDEENETGSYILSKRK--LEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVD 127

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              R  GF P S        D S   Y G+ +   + ++  E  R+ LS K       + 
Sbjct: 128 VGQR--GFIPASLISTDYIEDFSD--YEGRVLELKVEELEPEKNRVILSRKAVEAEENE- 182

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                    ++K  +LQS K              G VIEGKV    +FG  +       V
Sbjct: 183 ---------KKKAELLQSIK-------------AGDVIEGKVARLTNFGAFIDL---GGV 217

Query: 901 YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            G +   +L+   V+S       G  ++  +  V +    V LS+K      F 
Sbjct: 218 DGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFE 271


>gi|153005162|ref|YP_001379487.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. Fw109-5]
 gi|152028735|gb|ABS26503.1| ribosomal protein S1 [Anaeromyxobacter sp. Fw109-5]
          Length = 578

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 32/355 (9%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  ++K G ++KG+V  +  +GA +   GG+  L  +  MS   I  P + F+VG E+  
Sbjct: 207 TLKNLKEGAILKGQVKNLTDYGAFIDL-GGIDGLLHVTDMSWGRIGHPSEMFEVGQEVRV 265

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL     S+R+++  K+            Y   T      G +  +  +G F+    GV
Sbjct: 266 VVLKFDPASERVSLGLKQIQEDPWHRADEKYPVGTR---VRGKVVSLTDYGAFIELEQGV 322

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
           +G    SE+      + PS + + G  V+  ++   P ++RI+L        P  + ED 
Sbjct: 323 EGLVHVSEMSWTKRVKHPSKLVNQGDQVEAVVLDIDPKAKRISLGMKQIEANPWTLLEDK 382

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
              +G+ + G V  VT   V V     G  +G     H++D     +  + +  PG +F 
Sbjct: 383 Y-PIGTTIRGEVRNVTDFGVFV-----GVEEGIDGLVHVSD----ISWTERIKHPGDKFK 432

Query: 726 Q-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGC 777
           +       +L +D E+    L  K + ++    L    S  HP  + V G V  + + G 
Sbjct: 433 KGDVVEAVVLNIDVENERFSLGIKQAHVDPWTTL----SERHPVGARVKGKVTKVTDFGA 488

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           FV     + G    S+  D +  +       GQ V   ++D++    +I LS+KQ
Sbjct: 489 FVEIEPGIEGLVHVSEMKDERVENPRDVVTEGQEVEVKVIDMDLHERKIALSIKQ 543



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 147/348 (42%), Gaps = 45/348 (12%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
           +L+ ++EG +L   VK++ D+G  +  G     G L   +++   G    P  + +    
Sbjct: 207 TLKNLKEGAILKGQVKNLTDYGAFIDLG--GIDGLLHVTDMS--WGRIGHPSEMFE---- 258

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL------VP-GMMVSTRVQSILENGVM 338
            + +  +VV L  DP   S+ V+  LK I  D         P G  V  +V S+ + G  
Sbjct: 259 -VGQEVRVVVLKFDP--ASERVSLGLKQIQEDPWHRADEKYPVGTRVRGKVVSLTDYGAF 315

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  T    +     NQ  +V A +L +DP ++ + L +     NP
Sbjct: 316 IELEQGVEGLVHVSEMSWTKRVKHPSKLVNQGDQVEAVVLDIDPKAKRISLGMKQIEANP 375

Query: 394 Y-LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EE 448
           + LL ++ P       +V ++ D    V V+ G+  L             V +SD++  E
Sbjct: 376 WTLLEDKYPIGTTIRGEVRNVTDFGVFVGVEEGIDGL-------------VHVSDISWTE 422

Query: 449 EVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKV 506
            ++    K+K+G  V   +L      E  + GI +A        T S+  P G  VKGKV
Sbjct: 423 RIKHPGDKFKKGDVVEAVVLNIDVENERFSLGIKQAHVDPWT--TLSERHPVGARVKGKV 480

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
             V  FGA V+   G++ L  +  M +  +  P      G E+  +V+
Sbjct: 481 TKVTDFGAFVEIEPGIEGLVHVSEMKDERVENPRDVVTEGQEVEVKVI 528



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 150/373 (40%), Gaps = 62/373 (16%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            ++   +++ G V N+ + G F+  LG + G    +    G+    S+ + VGQ VR  +L
Sbjct: 210  NLKEGAILKGQVKNLTDYGAFID-LGGIDGLLHVTDMSWGRIGHPSEMFEVGQEVRVVVL 268

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
              +  + R++L LKQ                      + +   H   E      + +G+ 
Sbjct: 269  KFDPASERVSLGLKQ----------------------IQEDPWHRADE-----KYPVGTR 301

Query: 878  IEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
            + GKV    D+G  +  E+      H     +    +     V  G  ++A +LD+    
Sbjct: 302  VRGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKRVKHPSKLVNQGDQVEAVVLDIDPKA 361

Query: 932  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 991
            + + L +K +      EAN     + K           +  T+   V  V +  + + + 
Sbjct: 362  KRISLGMKQI------EANPWTLLEDK---------YPIGTTIRGEVRNVTDFGVFVGVE 406

Query: 992  EYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETET 1049
            E    + + S   +  + K P  +F  G  V A V+ +   +   R  L +K A  +  T
Sbjct: 407  EGIDGLVHVSDISWTERIKHPGDKFKKGDVVEAVVLNIDVENE--RFSLGIKQAHVDPWT 464

Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
            + S+R      + VG+ V+ ++T++      ++   G  G +H++E+ D++   VEN   
Sbjct: 465  TLSER------HPVGARVKGKVTKVTDFGAFVEIEPGIEGLVHVSEMKDER---VENPRD 515

Query: 1110 NFKIGQTVTARII 1122
                GQ V  ++I
Sbjct: 516  VVTEGQEVEVKVI 528



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 5/118 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +++L    I++G VKN+T  G FI L   +D  + ++++S G +  P + F +G+ V   
Sbjct: 208  LKNLKEGAILKGQVKNLTDYGAFIDLG-GIDGLLHVTDMSWGRIGHPSEMFEVGQEVRVV 266

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            VL  +P S+RV + LK        +++        VG  V G++  +  YG FI +E 
Sbjct: 267  VLKFDPASERVSLGLKQIQEDPWHRAD----EKYPVGTRVRGKVVSLTDYGAFIELEQ 320



 Score = 48.5 bits (114), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 91/446 (20%), Positives = 170/446 (38%), Gaps = 68/446 (15%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILS 578
           GVKA  P   +     ++P +     +G +  F+V+    KR  +   + ++  K     
Sbjct: 148 GVKAFLPGSQVD----IRPVRNLDKLIGEKFKFKVIKFNKKRGNIVLSRRVLLEKEREEL 203

Query: 579 ---SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
              +     +  I  G +  +  +G F+    G+ G    +++       PS M+ VGQ 
Sbjct: 204 KKETLKNLKEGAILKGQVKNLTDYGAFIDL-GGIDGLLHVTDMSWGRIGHPSEMFEVGQE 262

Query: 636 VKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
           V+  ++   PAS R++L    + +      D+   +G+ V G V  +T     +  + +G
Sbjct: 263 VRVVVLKFDPASERVSLGLKQIQEDPWHRADEKYPVGTRVRGKVVSLTDYGAFIE-LEQG 321

Query: 694 YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLI 746
                   E L  H+   +  K V  P    +Q       +L +D ++  + L  K    
Sbjct: 322 -------VEGLV-HVSEMSWTKRVKHPSKLVNQGDQVEAVVLDIDPKAKRISLGMKQIEA 373

Query: 747 NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKT 805
           N    L  D   I   + + G V N+ + G FV     + G    S     +R       
Sbjct: 374 NPWTLL-EDKYPI--GTTIRGEVRNVTDFGVFVGVEEGIDGLVHVSDISWTERIKHPGDK 430

Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
           +  G  V + +L+++ E  R +L +KQ+                        S +H    
Sbjct: 431 FKKGDVVEAVVLNIDVENERFSLGIKQAHVDPW----------------TTLSERHP--- 471

Query: 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GS 918
                   +G+ ++GKV +  DFG  V  E    + G +   ++    VE+       G 
Sbjct: 472 --------VGARVKGKVTKVTDFGAFVEIE--PGIEGLVHVSEMKDERVENPRDVVTEGQ 521

Query: 919 VIQAAILDVAKAERLVDLSLKTVFID 944
            ++  ++D+   ER + LS+K +  D
Sbjct: 522 EVEVKVIDMDLHERKIALSIKQLNRD 547



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 62/289 (21%)

Query: 1257 IHEGDIVGGRISKI--------LSGVGGLVVQIGPHLYGRV-HFTELKNICVS------- 1300
            + EG I+ G++  +        L G+ GL+  +    +GR+ H +E+  +          
Sbjct: 211  LKEGAILKGQVKNLTDYGAFIDLGGIDGLL-HVTDMSWGRIGHPSEMFEVGQEVRVVVLK 269

Query: 1301 -DPLS-----GYDEGQFDPLSGYDE----GQFVKCKV---------LEISRTVRGTFHV- 1340
             DP S     G  + Q DP    DE    G  V+ KV         +E+ + V G  HV 
Sbjct: 270  FDPASERVSLGLKQIQEDPWHRADEKYPVGTRVRGKVVSLTDYGAFIELEQGVEGLVHVS 329

Query: 1341 ELSLRSSLDGMSS-TNSSD----LSTDVDTPGKHLEK------------IEDLSP-NMIV 1382
            E+S    +   S   N  D    +  D+D   K +              +ED  P    +
Sbjct: 330  EMSWTKRVKHPSKLVNQGDQVEAVVLDIDPKAKRISLGMKQIEANPWTLLEDKYPIGTTI 389

Query: 1383 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            +G V+NVT  G F+ +   +D  V +S++S    ++ P  +F  G +V   VL+++  ++
Sbjct: 390  RGEVRNVTDFGVFVGVEEGIDGLVHVSDISWTERIKHPGDKFKKGDVVEAVVLNIDVENE 449

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1489
            R  + +K      A       LS  H VG  V G++ +V  +G F+ IE
Sbjct: 450  RFSLGIK-----QAHVDPWTTLSERHPVGARVKGKVTKVTDFGAFVEIE 493



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 37/317 (11%)

Query: 998  GYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
            G   V+D +  +   P + F  GQ V   V+    +S   R+ L LK I E       RA
Sbjct: 238  GLLHVTDMSWGRIGHPSEMFEVGQEVRVVVLKFDPASE--RVSLGLKQIQE---DPWHRA 292

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
             +K  Y VG+ V+ ++  +      ++   G  G +H++E++  K   V++       G 
Sbjct: 293  DEK--YPVGTRVRGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKR--VKHPSKLVNQGD 348

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
             V A ++    K       + ++   P  L            E    IG  + G V  V 
Sbjct: 349  QVEAVVLDIDPKAKRISLGMKQIEANPWTLL-----------EDKYPIGTTIRGEVRNVT 397

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            +    + +   +   + + D ++    ++    +F  G  V   VL+I+ E +   L   
Sbjct: 398  DFGVFVGVEEGIDGLVHVSDISW-TERIKHPGDKFKKGDVVEAVVLNIDVENERFSL--- 453

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTE 1293
                GI    VD       T + E   VG R+   ++ V   G  V+I P + G VH +E
Sbjct: 454  ----GIKQAHVD-----PWTTLSERHPVGARVKGKVTKVTDFGAFVEIEPGIEGLVHVSE 504

Query: 1294 LKNICVSDPLSGYDEGQ 1310
            +K+  V +P     EGQ
Sbjct: 505  MKDERVENPRDVVTEGQ 521


>gi|402758088|ref|ZP_10860344.1| 30S ribosomal protein S1 [Acinetobacter sp. NCTC 7422]
          Length = 560

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVKL 669
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKA 360

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G S G     HL+D    E         K G   
Sbjct: 361 NEKGEKVSGTIKSITDFGIFI-----GLSGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGAMVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 147/362 (40%), Gaps = 49/362 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L  ++EG  +T  +K++ D+G  +  G     G L   ++A    ++    V+ G  +  
Sbjct: 186 LAQLEEGQTVTGTIKNLTDYGAFVDLG--GIDGLLHITDMAWKRIKHPSEVVEVGQEVTV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G +V  RV ++ + G
Sbjct: 244 KVLKFDRERNRVSLGLKQLGEDP------------WLAIMSRYPKGSIVKARVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
                     G V +  + +T    +         +V+  +L VD   R + L +     
Sbjct: 292 CFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEV 450
           NP+    +A     KV      S  ++     G+ + +          V +SD++  E+ 
Sbjct: 352 NPWEEFAKANEKGEKV------SGTIKSITDFGIFIGLSG---GIDGLVHLSDISWNEQG 402

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEG--LATGI--LKASAFEGLVFTHSDVKPGMVVKGKV 506
            +  ++YK+G  V   IL     EG  ++ GI  L +  F   +  +   + G +VKG V
Sbjct: 403 EEAIRRYKKGDTVEAVILSV-DAEGNRISLGIKQLNSDPFNDFLAAN---ERGAMVKGTV 458

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
            AVD+ GA V+    ++A      ++   +    K  +VG E+  +++ V  KS+ I ++
Sbjct: 459 TAVDAKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLS 518

Query: 565 HK 566
            K
Sbjct: 519 IK 520



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 8/165 (4%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVG--AELVFRV 553
           + G  V G + ++  FG  +   GG+  L  L  +S  E  +   +++K G   E V   
Sbjct: 362 EKGEKVSGTIKSITDFGIFIGLSGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILS 421

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGF 612
           +  +  RI++  K+          + +  A +R  +  G +T ++  G  V+  + ++  
Sbjct: 422 VDAEGNRISLGIKQLNSDP----FNDFLAANERGAMVKGTVTAVDAKGATVKLADDIEAT 477

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
              SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 478 LKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522


>gi|393757478|ref|ZP_10346302.1| 30S ribosomal protein S1 [Alcaligenes faecalis subsp. faecalis NCIB
           8687]
 gi|393165170|gb|EJC65219.1| 30S ribosomal protein S1 [Alcaligenes faecalis subsp. faecalis NCIB
           8687]
          Length = 572

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 162/380 (42%), Gaps = 34/380 (8%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+AS  E        +  G +VKG V  +  +GA V   GG+  L  +  M+   +  P
Sbjct: 183 VLEASMGEERQKLLETLSEGAIVKGIVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHP 241

Query: 540 GKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +VG E+  +VL    +  R+++  K+      + +   Y + T RL   G +T + 
Sbjct: 242 SEVLQVGQEIEAKVLKFDQEKSRVSLGVKQLGEDPWIGLARRYPQNT-RLF--GKVTNLT 298

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            +G FV   +G++G    SE+   +   +P  +  +G+ V+  ++      RRI+L   M
Sbjct: 299 DYGAFVEVEDGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--M 356

Query: 657 KPTRVS--EDDLV--KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
           K  R +  ED  +  K G  V G +  +T   V V     G   G     HL+D     T
Sbjct: 357 KQCRANPWEDFAINFKRGDKVRGGIKSITDFGVFV-----GLPGGIDGLVHLSDLSWSET 411

Query: 713 VMKSV--IKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSV 764
             ++V   K G E D +++ +D +   + L  K        QL  D      +     +V
Sbjct: 412 GEEAVRNFKKGDEVDAVVLGIDTDKERISLGIK--------QLEGDPFNNFVATYDKGAV 463

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
           V G V ++   G  V     + G+   S+   G+  D +     GQ + + IL V+ +T 
Sbjct: 464 VSGVVKSVEPKGAVVTLSLDVEGYLRASEISSGRVEDATTALKEGQEIETMILSVDRKTR 523

Query: 825 RITLSLKQSCCSSTDASFMQ 844
            I LS+K    + T  S  +
Sbjct: 524 SIQLSIKARDTAETAQSMAR 543



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 136/317 (42%), Gaps = 39/317 (12%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           +++ A++L  D     V L +     +P++   R  P +     KV ++ D    V V+ 
Sbjct: 249 QEIEAKVLKFDQEKSRVSLGVKQLGEDPWIGLARRYPQNTRLFGKVTNLTDYGAFVEVED 308

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ +  E  V ++++        R RI LG +    
Sbjct: 309 GIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDED-------RRRISLGMKQC-- 359

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 +A+ +E       + K G  V+G + ++  FG  V  PGG+  L  L  +S  E
Sbjct: 360 ------RANPWEDFAI---NFKRGDKVRGGIKSITDFGVFVGLPGGIDGLVHLSDLSWSE 410

Query: 536 IVKPG-KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
             +   + FK G E+   VLG+ +  +RI++  K+         +++Y +     +  G 
Sbjct: 411 TGEEAVRNFKKGDEVDAVVLGIDTDKERISLGIKQLEGDPFNNFVATYDKGA---VVSGV 467

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +  +E  G  V     V+G+   SE+      + ++    GQ ++  I+S    +R I L
Sbjct: 468 VKSVEPKGAVVTLSLDVEGYLRASEISSGRVEDATTALKEGQEIETMILSVDRKTRSIQL 527

Query: 653 SFMMKPTRVSEDDLVKL 669
           S   + T  +   + +L
Sbjct: 528 SIKARDTAETAQSMARL 544



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 31/179 (17%)

Query: 130 NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 189
           N   G K+ G +  + +  + + LPGG+ GL   +D        E   N        F  
Sbjct: 370 NFKRGDKVRGGIKSITDFGVFVGLPGGIDGLVHLSDLSWSETGEEAVRN--------FKK 421

Query: 190 GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS-------LETVQEGMVLTAYVKS 242
           G  V  +VL +D DK+           R+SL  K L        + T  +G V++  VKS
Sbjct: 422 GDEVDAVVLGIDTDKE-----------RISLGIKQLEGDPFNNFVATYDKGAVVSGVVKS 470

Query: 243 IEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 297
           +E  G ++   L    G+L  + ++    E++   +K G  ++ ++ S+DR  + + LS
Sbjct: 471 VEPKGAVVTLSL-DVEGYLRASEISSGRVEDATTALKEGQEIETMILSVDRKTRSIQLS 528



 Score = 40.4 bits (93), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 23/173 (13%)

Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI-EDLS 1377
            EG+ ++ KV+++ R      +V LS R+ L+               + G+  +K+ E LS
Sbjct: 158  EGKTLEFKVIKLDRKRN---NVVLSRRAVLEA--------------SMGEERQKLLETLS 200

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
               IV+G VKN+T  G F+ L   +D  + +++++   V  P +   +G+ +  +VL  +
Sbjct: 201  EGAIVKGIVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEVLQVGQEIEAKVLKFD 259

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
                RV + +K    +      I           + G++  +  YG F+ +E+
Sbjct: 260  QEKSRVSLGVK----QLGEDPWIGLARRYPQNTRLFGKVTNLTDYGAFVEVED 308


>gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 401

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  +  FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTDFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 114/248 (45%), Gaps = 38/248 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKTIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
                 G  V IG  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  TDF--GSFVDIGG-VDGLVHISEISYKHVDKPS--------DVLK---VGQDVKVKVIGI 253

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +                  P    +    L+   +++G VK++T
Sbjct: 254  DND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLT 293

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            + G F+ ++  +   V +S ++  +V+ P     +G+ V  +VL+++P  +R+ +++K  
Sbjct: 294  NFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSKRRISLSIKQV 353

Query: 1451 DSRTASQS 1458
            D   AS S
Sbjct: 354  DPENASSS 361



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 44/214 (20%)

Query: 1306 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1360
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1361 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1394
                    T++D P K      H E IE+            L    +V+G V  +T  G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGS 212

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              Q+     S+L+ GD++ G++K + ++G F+ +
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEV 301



 Score = 43.5 bits (101), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 146/362 (40%), Gaps = 38/362 (10%)

Query: 537 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           VK G  FKV    V R  G   +        T VK + A      +  +     G +T  
Sbjct: 65  VKLGDTFKV---YVVRRAGGDKENGDFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSS 121

Query: 597 EKHGCFVRFYNGVQGFAPRSELG--LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            + G  V    G +GF P S +        +P    ++G+ +K +I    PA  R+ LS 
Sbjct: 122 VRGGLLVDV--GTRGFLPASLISNRFVSDLKP----YIGKTIKVKITEIDPAKNRLILSH 175

Query: 655 --MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             +++  R    + V     +G +V G V  +T     V +   G   G +    ++   
Sbjct: 176 KELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFVDI---GGVDGLVHISEIS--Y 230

Query: 709 EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 767
           +H      V+K G +   +++ +DN+   + LS K +  +  +Q     S ++   V+ G
Sbjct: 231 KHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQA---TSSLNEGDVIEG 287

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            V ++   G FV     + G    S+         S    VGQ V+  +L+++    RI+
Sbjct: 288 EVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSKRRIS 347

Query: 828 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV----EGFIIGSVIEGKVH 883
           LS+KQ    +  +S         ++    +SS +N    K++     GF +G +I  ++ 
Sbjct: 348 LSIKQVDPENASSS--------NDRPRARRSSNNNAFARKYMNNDDNGFSLGDMIGDQLK 399

Query: 884 ES 885
            S
Sbjct: 400 NS 401


>gi|403380791|ref|ZP_10922848.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JC66]
          Length = 420

 Score = 73.9 bits (180), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 148/348 (42%), Gaps = 25/348 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           VK    VKGK++ VD+  A V        + PL  +S   I +  +  +VG EL  +V+ 
Sbjct: 41  VKKDDTVKGKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEAVEVGQELELKVVK 100

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +  ++  +   K LV S+ A     A+   +      +  + K G  +    G++GF P 
Sbjct: 101 IDDEKEKLILSKRLVDSEKAWDDLQAKLESQETIEAKVADVVKGGLVIDV--GLRGFVPA 158

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---------DL 666
           S +      E  S Y  G+ ++ ++       R  N   + +   + E+         + 
Sbjct: 159 S-MVERHFVEDFSDYK-GRTLRMKVKE---LDREKNKVILSQKDVLDEEYNAKKQEILNS 213

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 725
           +++G  + G V  +TP  V V +   G   G +    +A H  H      ++K G +   
Sbjct: 214 IEIGQEIEGTVQRLTPFGVFVDI---GGIDGLVHISEMAWH--HVEEASELVKEGDKVKV 268

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           Q+L +D E+  + LS K +     +QL     HI   +VV G V  ++  G FV     +
Sbjct: 269 QVLKVDPENERISLSMKAAQPGPWEQL---GDHIQVGAVVSGTVKRLVNFGAFVEIAPGV 325

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +    GQ V+  ILD+N +  R++LS+K++
Sbjct: 326 EGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRVSLSIKET 373



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 144/325 (44%), Gaps = 53/325 (16%)

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILD-SAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            V G + KVDNE A + I       + + + SA   SE  E      +G+ +   V+ I+ 
Sbjct: 47   VKGKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEA---VEVGQELELKVVKIDD 103

Query: 1226 EKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            EK+ L L         S + VD     D++Q  +   + +  +++ ++ G  GLV+ +G 
Sbjct: 104  EKEKLIL---------SKRLVDSEKAWDDLQAKLESQETIEAKVADVVKG--GLVIDVG- 151

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
             L G V  + ++   V D             S Y +G+ ++ KV E+ R         LS
Sbjct: 152  -LRGFVPASMVERHFVED------------FSDY-KGRTLRMKVKELDREKNKVI---LS 194

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
             +  LD   +    ++   ++  G+ +E            G V+ +T  G F+ +   +D
Sbjct: 195  QKDVLDEEYNAKKQEILNSIEI-GQEIE------------GTVQRLTPFGVFVDIG-GID 240

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
              V +S ++  +VE   +    G  V  +VL V+P ++R+ +++K +      Q      
Sbjct: 241  GLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDPENERISLSMKAAQPGPWEQLG---- 296

Query: 1464 SNLHVGDIVIGQIKRVESYGLFITI 1488
             ++ VG +V G +KR+ ++G F+ I
Sbjct: 297  DHIQVGAVVSGTVKRLVNFGAFVEI 321



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 139/365 (38%), Gaps = 58/365 (15%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G I K++    FV       G  P  EL      E S    VGQ ++ +++       ++
Sbjct: 49  GKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEAVEVGQELELKVVKIDDEKEKL 108

Query: 651 NLSFMMKPTRVSEDDL-VKLGS---LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            LS  +  +  + DDL  KL S   + + V DVV    +V+ V  +G+   ++   H  +
Sbjct: 109 ILSKRLVDSEKAWDDLQAKLESQETIEAKVADVVK-GGLVIDVGLRGFVPASMVERHFVE 167

Query: 707 HLE--HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL---INSAQQLPSDASHIHP 761
                    ++  +K          LD E + ++LS K  L    N+ +Q     + I  
Sbjct: 168 DFSDYKGRTLRMKVKE---------LDREKNKVILSQKDVLDEEYNAKKQ--EILNSIEI 216

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V  +   G FV  +G + G    S+       + S+    G  V+  +L V+ 
Sbjct: 217 GQEIEGTVQRLTPFGVFVD-IGGIDGLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDP 275

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
           E  RI+LS+K +     +                 Q   H            +G+V+ G 
Sbjct: 276 ENERISLSMKAAQPGPWE-----------------QLGDH----------IQVGAVVSGT 308

Query: 882 VHESNDFGVVVSFEEHSDVYGF-----ITHHQLAG--ATVESGSVIQAAILDVAKAERLV 934
           V    +FG  V       V G      I+H  +      +E G  +Q  ILD+   E+ V
Sbjct: 309 VKRLVNFGAFVEI--APGVEGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRV 366

Query: 935 DLSLK 939
            LS+K
Sbjct: 367 SLSIK 371


>gi|118602599|ref|YP_903814.1| 30S ribosomal protein S1 [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567538|gb|ABL02343.1| SSU ribosomal protein S1P [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 558

 Score = 73.9 bits (180), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 162/384 (42%), Gaps = 38/384 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  ++G V  +  +GA +   GGV  L  +  +S   +  P +K  +G +++ +VL 
Sbjct: 189 LEEGKEIEGLVKNLADYGAFIDL-GGVDGLLHITDISWQRVNHPSEKLTIGDKIIVKVLN 247

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQG 611
              ++I V+     +  K    S +   +DRL       G ++ +  +G FVR   GV+G
Sbjct: 248 YDKEKIRVS-----LGLKQLTASPWDNISDRLPIGKKVPGTVSNLTDYGAFVRIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
               SE+   +    PS +  +GQ V+  ++    +  RI+LS         E   V   
Sbjct: 303 LVHVSEMDWTNANARPSKIVKLGQEVEVVVLDVQESKHRISLSMKQAQENPWESFEVTHN 362

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQL 727
                +V V +     ++V   G   G I   HLAD     + +  + S    G E + +
Sbjct: 363 KGDKILVSVKSITDFGLFVGLPGGIDGLI---HLADISWEKQSSDQLVSSYSKGQELEVI 419

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           ++ +D E   + L  K  L ++  Q    AS     S+V G +  +   G  +     +T
Sbjct: 420 ILNIDAEKERISLGIKQLLEDNFMQY---ASANRKGSIVKGVIMEVDSHGAIISLGEDIT 476

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           G+    +  + +  D++    +G+ V   I++V+  T  I++S+K               
Sbjct: 477 GYLKAGEISENRVDDVTSILKIGEEVEVAIVNVDRRTRNISVSIKAKNS----------- 525

Query: 847 FLLEEKIAM----LQSSKHNGSEL 866
             +EEK AM     QSS  +GS L
Sbjct: 526 --VEEKAAMENYNKQSSDASGSTL 547



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L     ++G VKN+   G FI L   +D  + ++++S   V  P ++  IG  +  +
Sbjct: 186  LEGLEEGKEIEGLVKNLADYGAFIDLG-GVDGLLHITDISWQRVNHPSEKLTIGDKIIVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIE 1489
            VL+ +    RV + LK       + S  +N+S+ L +G  V G +  +  YG F+ IE
Sbjct: 245  VLNYDKEKIRVSLGLK-----QLTASPWDNISDRLPIGKKVPGTVSNLTDYGAFVRIE 297


>gi|302787002|ref|XP_002975271.1| hypothetical protein SELMODRAFT_415416 [Selaginella moellendorffii]
 gi|300156845|gb|EFJ23472.1| hypothetical protein SELMODRAFT_415416 [Selaginella moellendorffii]
          Length = 298

 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 63/235 (26%)

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
            Q +  YV +V + WA L +S HLK  LF        SEL+ F+ RF +G     H+ S+N
Sbjct: 84   QSIIRYVQEVKDNWAWLVLSPHLKGCLF--------SELERFKERFKVGDPFQCHIRSVN 135

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             E+K +   L P       KT D           +GD++G RI+++ +GVGG  VQ    
Sbjct: 136  HERKQVDFSLHP-------KTSDEQ-------FKKGDLLGRRITRVFAGVGGRTVQGRWE 181

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
             +G+VH   +KN+     +        +PLSG                      H+E+SL
Sbjct: 182  SFGKVH-GFVKNVTEKGKVISGRILSIEPLSG----------------------HIEMSL 218

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
             +             +T  D+ G      +      IV G + N+ + G FI L+
Sbjct: 219  AT-------------TTSQDSSG-----WKKFGAGEIVSGCIHNIEAFGIFISLA 255



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 1426 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1485
            GK+++GR+LS+EPLS  +E++L T+ S+ +S            G+IV G I  +E++G+F
Sbjct: 197  GKVISGRILSIEPLSGHIEMSLATTTSQDSS-----GWKKFGAGEIVSGCIHNIEAFGIF 251

Query: 1486 ITIENTNLV 1494
            I++  +++V
Sbjct: 252  ISLAESDVV 260


>gi|383456174|ref|YP_005370163.1| 30S ribosomal protein S1 [Corallococcus coralloides DSM 2259]
 gi|380734247|gb|AFE10249.1| 30S ribosomal protein S1 [Corallococcus coralloides DSM 2259]
          Length = 568

 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 148/360 (41%), Gaps = 28/360 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  ++K G V+KG V  +  +GA +   GG+  L  +  MS   I  P + F VG E+  
Sbjct: 199 TLKNLKEGAVLKGVVKNLTDYGAFIDL-GGIDGLLHITDMSWGRIGHPSEMFNVGDEVRV 257

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL      +R+++  K+            Y   T      G +  I  +G F+    GV
Sbjct: 258 VVLKFDPAQERVSLGLKQIQEDPWHRADEKYPVGTR---VAGKVVSITDYGAFIEIEQGV 314

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
           +G    SE+      + PS +  VGQ V+  ++   P ++RI L        P  + ED 
Sbjct: 315 EGLVHVSEMSWTKRLKHPSKILEVGQTVEAVVLDIDPKAKRIALGMKQIEQNPWTLLEDK 374

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKP 720
              +GS++ G +  VT   V V     G  +G     H++D      ++H   M    K 
Sbjct: 375 Y-PIGSVIKGQIRNVTDFGVFV-----GVEEGVDGLVHVSDISWTQRIKHPGEM---FKK 425

Query: 721 GYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E + +++ +D E+    L  K    +  + L   +  +   S V G V  + + G FV
Sbjct: 426 GDEVEAVVLNIDVENERFSLGIKQLQPDPWETL---SERLPVGSRVKGKVTKVTDFGAFV 482

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                + G    S+  + +  +       GQ V   ++D+N+   ++ LS+K       D
Sbjct: 483 EIEPGIEGLVHVSELKEERVENPRDVVQEGQEVEVKLIDINTPDRKVALSIKALIGEGED 542



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 147/351 (41%), Gaps = 43/351 (12%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
           +L+ ++EG VL   VK++ D+G  +  G     G L   +++   G    P  +      
Sbjct: 199 TLKNLKEGAVLKGVVKNLTDYGAFIDLG--GIDGLLHITDMS--WGRIGHPSEMF----- 249

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL------VP-GMMVSTRVQSILENGVM 338
           ++    +VV L  DP    + V+  LK I  D         P G  V+ +V SI + G  
Sbjct: 250 NVGDEVRVVVLKFDP--AQERVSLGLKQIQEDPWHRADEKYPVGTRVAGKVVSITDYGAF 307

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  T    +        + V A +L +DP ++ + L +     NP
Sbjct: 308 IEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQTVEAVVLDIDPKAKRIALGMKQIEQNP 367

Query: 394 Y-LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVR 451
           + LL ++ P   V  G I + +         G+ + +          V +SD++  + ++
Sbjct: 368 WTLLEDKYPIGSVIKGQIRNVTD-------FGVFVGVEE---GVDGLVHVSDISWTQRIK 417

Query: 452 KLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKP-GMVVKGKVI 507
              + +K+G  V   +L      E  + GI  L+   +E    T S+  P G  VKGKV 
Sbjct: 418 HPGEMFKKGDEVEAVVLNIDVENERFSLGIKQLQPDPWE----TLSERLPVGSRVKGKVT 473

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
            V  FGA V+   G++ L  +  + E  +  P    + G E+  +++ + +
Sbjct: 474 KVTDFGAFVEIEPGIEGLVHVSELKEERVENPRDVVQEGQEVEVKLIDINT 524



 Score = 47.0 bits (110), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 5/110 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G V ++T  G FI + + ++  V +S +S    ++ P K   +G+ V   VL ++P +
Sbjct: 294  VAGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQTVEAVVLDIDPKA 353

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            KR+ + +K  +    +  E        +G ++ GQI+ V  +G+F+ +E 
Sbjct: 354  KRIALGMKQIEQNPWTLLE----DKYPIGSVIKGQIRNVTDFGVFVGVEE 399



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 149/367 (40%), Gaps = 52/367 (14%)

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF--P 1011
            + Q+++ K+E  K+L     +  +V+ + +    + L   +   G   ++D +  +   P
Sbjct: 189  EKQREEMKKETLKNLKEGAVLKGVVKNLTDYGAFIDLGGID---GLLHITDMSWGRIGHP 245

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             + F  G  V   V+    +    R+ L LK I E       RA +K  Y VG+ V  ++
Sbjct: 246  SEMFNVGDEVRVVVLKFDPAQE--RVSLGLKQIQE---DPWHRADEK--YPVGTRVAGKV 298

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              I      ++   G  G +H++E++  K   +++     ++GQTV A ++     P  K
Sbjct: 299  VSITDYGAFIEIEQGVEGLVHVSEMSWTKR--LKHPSKILEVGQTVEAVVL--DIDPKAK 354

Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            +  L    I+ +  T+ E             IG  + G +  V +    + +   +   +
Sbjct: 355  RIALGMKQIEQNPWTLLE---------DKYPIGSVIKGQIRNVTDFGVFVGVEEGVDGLV 405

Query: 1192 FILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
             + D ++      P E+      F  G  V   VL+I+ E +   L ++  Q        
Sbjct: 406  HVSDISWTQRIKHPGEM------FKKGDEVEAVVLNIDVENERFSLGIKQLQ-------- 451

Query: 1247 DISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
                D  +T       G  V G+++K+     G  V+I P + G VH +ELK   V +P 
Sbjct: 452  ---PDPWETLSERLPVGSRVKGKVTKVTDF--GAFVEIEPGIEGLVHVSELKEERVENPR 506

Query: 1304 SGYDEGQ 1310
                EGQ
Sbjct: 507  DVVQEGQ 513



 Score = 40.8 bits (94), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 111/267 (41%), Gaps = 54/267 (20%)

Query: 1271 LSGVGGLVVQIGPHLYGRV-HFTELKNICVS--------DPLS-----GYDEGQFDPLSG 1316
            L G+ GL+  I    +GR+ H +E+ N+           DP       G  + Q DP   
Sbjct: 225  LGGIDGLL-HITDMSWGRIGHPSEMFNVGDEVRVVVLKFDPAQERVSLGLKQIQEDPWHR 283

Query: 1317 YDE----GQFVKCKV---------LEISRTVRGTFHV-ELSLRSSLDGMS-----STNSS 1357
             DE    G  V  KV         +EI + V G  HV E+S    L   S          
Sbjct: 284  ADEKYPVGTRVAGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQTVE 343

Query: 1358 DLSTDVDTPGK-------HLEK-----IEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDA 1404
             +  D+D   K        +E+     +ED  P   +++G ++NVT  G F+ +   +D 
Sbjct: 344  AVVLDIDPKAKRIALGMKQIEQNPWTLLEDKYPIGSVIKGQIRNVTDFGVFVGVEEGVDG 403

Query: 1405 KVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
             V +S++S    ++ P + F  G  V   VL+++  ++R  + +K              L
Sbjct: 404  LVHVSDISWTQRIKHPGEMFKKGDEVEAVVLNIDVENERFSLGIK-----QLQPDPWETL 458

Query: 1464 SN-LHVGDIVIGQIKRVESYGLFITIE 1489
            S  L VG  V G++ +V  +G F+ IE
Sbjct: 459  SERLPVGSRVKGKVTKVTDFGAFVEIE 485


>gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|422845529|ref|ZP_16892239.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
 gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 401

 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 116/248 (46%), Gaps = 38/248 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKTIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
             +   G  V IG  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  TNF--GSFVDIGG-VDGLVHISEISYKHVDKPS--------DVLK---VGQDVKVKVIGI 253

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +                  P    +    L+   +++G VK++T
Sbjct: 254  DND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLT 293

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            + G F+ ++  +   V +S +S  +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 294  NFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQA 353

Query: 1451 DSRTASQS 1458
            D   AS S
Sbjct: 354  DPENASSS 361



 Score = 47.0 bits (110), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 44/214 (20%)

Query: 1306 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1360
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1361 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1394
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              Q+     S+L+ GD++ G++K + ++G F+ +
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEV 301



 Score = 41.6 bits (96), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 53/365 (14%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
           + G +   +++   V+        G  ++  +L++  ++R + LS+K    +    +N  
Sbjct: 305 IQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQADPENASSSNDR 364

Query: 953 RQAQK 957
            +A++
Sbjct: 365 PRARR 369


>gi|346311773|ref|ZP_08853773.1| hypothetical protein HMPREF9452_01642 [Collinsella tanakaei YIT
           12063]
 gi|345899960|gb|EGX69793.1| hypothetical protein HMPREF9452_01642 [Collinsella tanakaei YIT
           12063]
          Length = 393

 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLKSGMRLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T      A++  Y       I  G +TK+   G FV    G++G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRALVKKYPVGA---IVEGTVTKLVPFGAFVDLGEGIEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+      +PS + HVG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMANKHVDQPSQVTHVGDTVQVKVMEIDLDRRRISLSM 360



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 152/354 (42%), Gaps = 27/354 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T +D   G +V G V+ ++    +V      + + P+  +S  +   P     +G  +  
Sbjct: 27  TITDFDEGDLVNGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRKDANPADIVSLGDPIEA 86

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL  + K  R+ ++ K+   +     +     A + +   G + ++ K G  +    G+
Sbjct: 87  LVLQKEDKDGRLVLSKKRAEYERAWNRIEEKFNAGENV--EGEVIEVVKGGLILDI--GL 142

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSE 663
           +GF P S + L    + +S  ++G  ++ R++      +++  SRR+ L    K  R   
Sbjct: 143 RGFLPASLVDLRRVKDLTS--YMGTSIEARVIEMDRNRNNVVLSRRVVLEESRKAERSEI 200

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 722
              +K G  + G V  +      V +   G   G I    L+ +H+ H +    V+K G 
Sbjct: 201 LSKLKSGMRLKGTVSSIVDFGAFVDL---GGIDGLIHISELSWNHVNHPS---EVVKVGQ 254

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
           E + ++L +D     + L  K +  +  + L       +P  ++V G V  ++  G FV 
Sbjct: 255 EVEVEVLDVDLNRERISLGLKQTTEDPWRALVKK----YPVGAIVEGTVTKLVPFGAFVD 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
               + G    S+  +      S+  +VG +V+  +++++ +  RI+LS+K + 
Sbjct: 311 LGEGIEGLVHISEMANKHVDQPSQVTHVGDTVQVKVMEIDLDRRRISLSMKSAA 364


>gi|403515139|ref|YP_006655959.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
 gi|403080577|gb|AFR22155.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
          Length = 403

 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 14/173 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLHEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 34/197 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   DL   
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLHEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1440 SKRVEVTLKTSDSRTAS 1456
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 36/320 (11%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLK--QSCCSSTD 839
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362



 Score = 45.1 bits (105), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     ++LH GD+  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLHEGDVFEGEVKSLTNFGAFVEV 302


>gi|383935676|ref|ZP_09989110.1| small subunit ribosomal protein S1 [Rheinheimera nanhaiensis
           E407-8]
 gi|383703245|dbj|GAB59201.1| small subunit ribosomal protein S1 [Rheinheimera nanhaiensis
           E407-8]
          Length = 568

 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 149/349 (42%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ GM VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL 
Sbjct: 198 LEEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIPVKVLK 256

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +R+++  K+       AI S Y E     IT G +T +  +GCFV    GV+G  
Sbjct: 257 FDREKQRVSLGLKQMGEDPWAAIASRYPEGAK--IT-GRVTNLTDYGCFVEIEEGVEGLV 313

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS + ++G  V+  ++      RRI+L          E+       G
Sbjct: 314 HVSEMDWTNKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNKG 373

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             VSG +  +T   + +     G   G     HL+D   +AT  ++V   K G E    +
Sbjct: 374 DRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNATGEEAVREFKKGDEVHAVV 428

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL  D    ++  N   ++V G V  +   G  V   
Sbjct: 429 LQVDPERERISLGIK--------QLDEDPFNGYLADNKKGAIVKGEVTAVDAKGATVMLE 480

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G + G+   S     +  D +    VG+ V + ++ V+ +   I+LS+K
Sbjct: 481 GGVEGYIRVSDIARERIEDATTVLKVGEEVEARLMGVDRKNRVISLSIK 529



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 139/346 (40%), Gaps = 33/346 (9%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LET++EGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 195 LETLEEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEIPV 252

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            V   DR ++ V L        K + +D           G  ++ RV ++ + G  +   
Sbjct: 253 KVLKFDREKQRVSLGL------KQMGEDPWAAIASRYPEGAKITGRVTNLTDYGCFVEIE 306

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLH 397
               G V +  +  T    +     N    V   +L +D   R + L L     NP+   
Sbjct: 307 EGVEGLVHVSEMDWTNKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQCKANPWEEF 366

Query: 398 ----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               N+      K+  I D    + +D G+  L+ +          ++ +   EE VR+ 
Sbjct: 367 AKGFNKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNATGEEAVREF 418

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
            KK  E   V +++   R    L    L    F G +   +D K G +VKG+V AVD+ G
Sbjct: 419 -KKGDEVHAVVLQVDPERERISLGIKQLDEDPFNGYL---ADNKKGAIVKGEVTAVDAKG 474

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           A V   GGV+    +  ++   I       KVG E+  R++GV  K
Sbjct: 475 ATVMLEGGVEGYIRVSDIARERIEDATTVLKVGEEVEARLMGVDRK 520



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVL 554
           G  V GK+ ++  FG  +   GG+  L    H+S+      G    ++FK G E+   VL
Sbjct: 373 GDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNATGEEAVREFKKGDEVHAVVL 429

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  + +RI++  K+     +       A+     I  G +T ++  G  V    GV+G+
Sbjct: 430 QVDPERERISLGIKQL---DEDPFNGYLADNKKGAIVKGEVTAVDAKGATVMLEGGVEGY 486

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
              S++  +   + +++  VG+ V+ R+M     +R I+LS   K
Sbjct: 487 IRVSDIARERIEDATTVLKVGEEVEARLMGVDRKNRVISLSIKAK 531



 Score = 44.3 bits (103), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 136/331 (41%), Gaps = 56/331 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A++    PSE+       ++G  +   
Sbjct: 201  GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEIPVK 253

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK+ + L L+   +   D    I+     +   EG  + GR++ +     G  V
Sbjct: 254  VLKFDREKQRVSLGLKQMGE---DPWAAIA-----SRYPEGAKITGRVTNLTDY--GCFV 303

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VLEI    R    
Sbjct: 304  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNLGDSVEVMVLEIDEERR---- 349

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL G+    ++        P +   K    +    V G +K++T  G FI L 
Sbjct: 350  -----RISL-GLKQCKAN--------PWEEFAK--GFNKGDRVSGKIKSITDFGIFIGLD 393

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +   E   +EF  G  V   VL V+P  +R+ + +K  D    +  
Sbjct: 394  GGIDGLVHLSDISWNATGEEAVREFKKGDEVHAVVLQVDPERERISLGIKQLDEDPFN-- 451

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
                L++   G IV G++  V++ G  + +E
Sbjct: 452  --GYLADNKKGAIVKGEVTAVDAKGATVMLE 480



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 101/472 (21%), Positives = 184/472 (38%), Gaps = 67/472 (14%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +VKG V+AV     +V    G+K+   +P + +F+ +    +  VG  +   + 
Sbjct: 26  ETRPGAIVKGTVVAV--LKDVVMVDAGLKSEAAIP-VEQFKSLNGEIEVSVGDIIDVALD 82

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            ++         +   K   A +       D+    G IT   K G F    +G++ F P
Sbjct: 83  AIEDGFGETLLSREKAKRHEAWVRLEKACEDKETVIGVITGKVK-GGFTVEVDGIRAFLP 141

Query: 615 RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            S + + P  +   + +     +V+K  +  +++  SRR  +       R    + ++ G
Sbjct: 142 GSLVDVRPVRDTLHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSHERDQLLETLEEG 201

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
             V G+V  +T     V +   G   G +    +A   ++H +    ++  G E   ++L
Sbjct: 202 MEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEIPVKVL 255

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
             D E   + L  K        Q+  D     AS     + + G V N+ + GCFV    
Sbjct: 256 KFDREKQRVSLGLK--------QMGEDPWAAIASRYPEGAKITGRVTNLTDYGCFVEIEE 307

Query: 784 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            + G    S+ +D    ++  SK   +G SV   +L+++ E  RI+L LKQ C ++    
Sbjct: 308 GVEGLVHVSE-MDWTNKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQ-CKANPWEE 365

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------ 895
           F +                          GF  G  + GK+    DFG+ +  +      
Sbjct: 366 FAK--------------------------GFNKGDRVSGKIKSITDFGIFIGLDGGIDGL 399

Query: 896 -EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
              SD+    T  + A    + G  + A +L V      + L +K +  D F
Sbjct: 400 VHLSDISWNATGEE-AVREFKKGDEVHAVVLQVDPERERISLGIKQLDEDPF 450


>gi|359429491|ref|ZP_09220515.1| 30S ribosomal protein S1 [Acinetobacter sp. NBRC 100985]
 gi|358234952|dbj|GAB02054.1| 30S ribosomal protein S1 [Acinetobacter sp. NBRC 100985]
          Length = 560

 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKS 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G S G     HL+D    E         K G   
Sbjct: 361 NEKGEKVSGTIKSITDFGIFI-----GLSGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 9/186 (4%)

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
           ++ GI +  A     F  S+ K G  V G + ++  FG  +   GG+  L  L  +S  E
Sbjct: 342 ISLGIKQTRANPWEEFAKSNEK-GEKVSGTIKSITDFGIFIGLSGGIDGLVHLSDISWNE 400

Query: 536 IVKPG-KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHG 591
             +   +++K G   E V   +  +  RI++  K+          + +  A +R  +  G
Sbjct: 401 QGEEAIRRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKG 456

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +T ++  G  V+  + ++     SE+  D   + +    VGQ V+ +I++    SR IN
Sbjct: 457 TVTAVDAKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSIN 516

Query: 652 LSFMMK 657
           LS   K
Sbjct: 517 LSIKAK 522



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 147/362 (40%), Gaps = 49/362 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L  ++EG  +T  +K++ D+G  +  G     G L   ++A    ++    V+ G  +  
Sbjct: 186 LAQLEEGQTVTGTIKNLTDYGAFVDLG--GIDGLLHITDMAWKRIKHPSEVVEVGQEVTV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G +V  RV ++ + G
Sbjct: 244 KVLKFDRERNRVSLGLKQLGEDP------------WLAIMSRYPKGSIVKARVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
                     G V +  + +T    +         +V+  +L VD   R + L +     
Sbjct: 292 CFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEV 450
           NP+    ++     KV      S  ++     G+ + +          V +SD++  E+ 
Sbjct: 352 NPWEEFAKSNEKGEKV------SGTIKSITDFGIFIGLSG---GIDGLVHLSDISWNEQG 402

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEG--LATGI--LKASAFEGLVFTHSDVKPGMVVKGKV 506
            +  ++YK+G  V   IL     EG  ++ GI  L +  F   +  +   + G +VKG V
Sbjct: 403 EEAIRRYKKGDTVEAVILSV-DAEGNRISLGIKQLNSDPFNDFLAAN---ERGALVKGTV 458

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
            AVD+ GA V+    ++A      ++   +    K  +VG E+  +++ V  KS+ I ++
Sbjct: 459 TAVDAKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLS 518

Query: 565 HK 566
            K
Sbjct: 519 IK 520


>gi|313678983|ref|YP_004056722.1| 30S ribosomal protein s1 [Oceanithermus profundus DSM 14977]
 gi|313151698|gb|ADR35549.1| SSU ribosomal protein S1P [Oceanithermus profundus DSM 14977]
          Length = 597

 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 198/459 (43%), Gaps = 69/459 (15%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            V+ G +++G V  V    V V V AK   +G IP   L +       +K ++KPG E + 
Sbjct: 82   VRRGQVLTGRVVFVGSEGVAVDVGAK--VEGIIPFNQLTEEPLSEEELKKMLKPGDEVEV 139

Query: 727  LLV-LDNESSNLLLSAKYSLINSA-QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +V +D  ++ ++LS K +  + A +++   A    P  V           G  V +L  
Sbjct: 140  YVVRVDLPNNVIILSKKRAEADKAWRKIVELAEKGEPVEVTVREKVR----GGLVAYLEG 195

Query: 785  LTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            +  F P S+ VD +R A+L +  +VGQ++   I ++N + GR+ LS +            
Sbjct: 196  VRAFIPASQ-VDIKRVAELDE--FVGQTIPVKITEINRKKGRVILSRR------------ 240

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
                LLEE        K   +E+  +EG   G+ +EGKV E  DFG  V+      + G 
Sbjct: 241  ---VLLEE------DQKKKRAEV--LEGLEPGAEVEGKVVEVTDFGAFVNL---GAIDGL 286

Query: 904  ITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
            I   +L+          V+ G  ++A +L V K    V+LS+K +  D ++ A    +  
Sbjct: 287  IHRSELSWGRFEHPREVVKVGDEVKAKVLSVDKERERVNLSIKALTPDPWQTAAEKYEVG 346

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
            ++ +     K +G+     A VEI          P     I    +S     + P +   
Sbjct: 347  QRIK----GKVVGL-TPFGAFVEIE---------PGLEGLIHITEMSWTKRPRHPSEVLK 392

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             G+ V A V+ +       RL L L+     +T      +    Y  G++V+ +IT +  
Sbjct: 393  EGEEVEAVVLRIDPEQR--RLSLGLR-----QTLPDPWKELPEKYPPGTVVKGKITGVTD 445

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
              + ++   G  G +HI+E++ +    ++N    FK G+
Sbjct: 446  FGVFVEIEDGIEGLVHISELDYEH---IDNPAEKFKKGE 481



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 14/175 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVL 554
           G  +KGKV+ +  FGA V+   G++ L    H++E    K    P +  K G E+   VL
Sbjct: 346 GQRIKGKVVGLTPFGAFVEIEPGLEGLI---HITEMSWTKRPRHPSEVLKEGEEVEAVVL 402

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            +  + +R+++  ++TL      +   Y   T   +  G IT +   G FV   +G++G 
Sbjct: 403 RIDPEQRRLSLGLRQTLPDPWKELPEKYPPGT---VVKGKITGVTDFGVFVEIEDGIEGL 459

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--FMMKPTRVSEDD 665
              SEL  +    P+  +  G+ ++  +++     +R++LS   ++ P   +ED+
Sbjct: 460 VHISELDYEHIDNPAEKFKKGEELEVVVLNIDATDQRVSLSRKRLLPPPVPTEDE 514



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 32/257 (12%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G + ++   G FV     + G   RSEL       P  +  VG  VK +++S      R
Sbjct: 265 EGKVVEVTDFGAFVNL-GAIDGLIHRSELSWGRFEHPREVVKVGDEVKAKVLSVDKERER 323

Query: 650 INLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
           +NLS       P + + +   ++G  + G V  +TP    V +            E   +
Sbjct: 324 VNLSIKALTPDPWQTAAEKY-EVGQRIKGKVVGLTPFGAFVEI------------EPGLE 370

Query: 707 HLEHATVM---------KSVIKPGYEFDQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
            L H T M           V+K G E +  +L +D E   L L  + +L +  ++LP   
Sbjct: 371 GLIHITEMSWTKRPRHPSEVLKEGEEVEAVVLRIDPEQRRLSLGLRQTLPDPWKELP--- 427

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSN 815
               P +VV G +  + + G FV     + G    S+ +D +  D  ++ +  G+ +   
Sbjct: 428 EKYPPGTVVKGKITGVTDFGVFVEIEDGIEGLVHISE-LDYEHIDNPAEKFKKGEELEVV 486

Query: 816 ILDVNSETGRITLSLKQ 832
           +L++++   R++LS K+
Sbjct: 487 VLNIDATDQRVSLSRKR 503



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 44/239 (18%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G  V   VLS++KE++ + L ++            ++ D  QT   + + VG RI   +
Sbjct: 306  VGDEVKAKVLSVDKERERVNLSIK-----------ALTPDPWQTAAEKYE-VGQRIKGKV 353

Query: 1272 SGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
             G+   G  V+I P L G +H TE+           + +    P     EG+ V+  VL 
Sbjct: 354  VGLTPFGAFVEIEPGLEGLIHITEM----------SWTKRPRHPSEVLKEGEEVEAVVLR 403

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
            I    R    + L LR +L                 P    E  E   P  +V+G +  V
Sbjct: 404  IDPEQR---RLSLGLRQTL-----------------PDPWKELPEKYPPGTVVKGKITGV 443

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            T  G F+ +   ++  V +S L   ++++P ++F  G+ +   VL+++   +RV ++ K
Sbjct: 444  TDFGVFVEIEDGIEGLVHISELDYEHIDNPAEKFKKGEELEVVVLNIDATDQRVSLSRK 502



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 27/173 (15%)

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ +  K+ EI+R       V LS R  L+              D   K  E +E L P 
Sbjct: 218  GQTIPVKITEINRK---KGRVILSRRVLLEE-------------DQKKKRAEVLEGLEPG 261

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
              V+G V  VT  G F+ L   +D  +  S LS G  E P +   +G  V  +VLSV+  
Sbjct: 262  AEVEGKVVEVTDFGAFVNLG-AIDGLIHRSELSWGRFEHPREVVKVGDEVKAKVLSVDKE 320

Query: 1440 SKRVEVTLK--TSDS-RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +RV +++K  T D  +TA++          VG  + G++  +  +G F+ IE
Sbjct: 321  RERVNLSIKALTPDPWQTAAE-------KYEVGQRIKGKVVGLTPFGAFVEIE 366



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 12/175 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +A   EGL       +PG  V+GKV+ V  FGA V   G +  L     +S      P +
Sbjct: 251 RAEVLEGL-------EPGAEVEGKVVEVTDFGAFVNL-GAIDGLIHRSELSWGRFEHPRE 302

Query: 542 KFKVGAELVFRVLGVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
             KVG E+  +VL V  +R  V    K L        +   E   R+   G +  +   G
Sbjct: 303 VVKVGDEVKAKVLSVDKERERVNLSIKALTPDPWQTAAEKYEVGQRI--KGKVVGLTPFG 360

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            FV    G++G    +E+        PS +   G+ V+  ++   P  RR++L  
Sbjct: 361 AFVEIEPGLEGLIHITEMSWTKRPRHPSEVLKEGEEVEAVVLRIDPEQRRLSLGL 415



 Score = 47.4 bits (111), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 8/77 (10%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE---IVKPGKKFKVGAELVFRVL 554
           PG VVKGK+  V  FG  V+   G++ L    H+SE +   I  P +KFK G EL   VL
Sbjct: 432 PGTVVKGKITGVTDFGVFVEIEDGIEGLV---HISELDYEHIDNPAEKFKKGEELEVVVL 488

Query: 555 GVKS--KRITVTHKKTL 569
            + +  +R++++ K+ L
Sbjct: 489 NIDATDQRVSLSRKRLL 505


>gi|217967761|ref|YP_002353267.1| RNA binding S1 domain-containing protein [Dictyoglomus turgidum DSM
           6724]
 gi|217336860|gb|ACK42653.1| RNA binding S1 domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 552

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 118/545 (21%), Positives = 223/545 (40%), Gaps = 71/545 (13%)

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT----G 479
           GL LDI        A++  S+++++   KLEK  K+   + V I    + EG+ T     
Sbjct: 33  GLWLDIGK---KYDAFLPYSELSKDLKVKLEKN-KDIDNIPVVITSINYREGIITVSHKK 88

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
            ++   +E L++ + + +P   ++ KV   +  G IV+    ++   P   +    I  P
Sbjct: 89  AVENKIWEELLWAYQNNEP---IQCKVTDYNGRGFIVEIKNEIEGFIPAKEIDIPPINSP 145

Query: 540 GKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEK 598
                   E   + +  + K++ ++ ++ L K +    ++ + +  +  I  G I KI+ 
Sbjct: 146 KYYINRRVEGKIKKINPEKKQLIISVREILEKKQEEERANLWEKIKNSQIVRGKIIKIDD 205

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-- 656
               V    G+ G   + E+   P       Y VG +VK +I+S    S+   LS     
Sbjct: 206 EKITVDLGLGITGEVEKDEISWFPIRNIRRYYSVGDIVKAKILSLNEDSKTAKLSIKQTQ 265

Query: 657 -KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
             P  V ++   + GS+V G +  +    VV      GY    IP   ++      + +K
Sbjct: 266 PNPWSVFKEKYPE-GSIVEGEIIKIAGGLVVKVDNLIGY----IPVSEIS--WGRPSNIK 318

Query: 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN----SVVHGYVC 770
           + +K G +   ++L +D  +  + LS K       Q  P+    I  N     +V G + 
Sbjct: 319 NELKIGDKVRLKVLNIDEINKKIFLSMK-------QVEPNPWDVIDKNYKIGDIVSGKIT 371

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLS 829
           NI E G F+     L G  P+ K +  +R  DL + + +G ++   I+D++ E  ++TLS
Sbjct: 372 NITEFGIFIEIKPGLEGLIPK-KFLSWERTNDLFEKFKIGDTLEVKIIDLDKENKKLTLS 430

Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
            +                LL++    +      G  +K            GK+ E    G
Sbjct: 431 RRD---------------LLKDPWEDINEKYKEGQNIK------------GKIVEKIKDG 463

Query: 890 VVVSFEEHSDVYGFITHHQLA------GATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
            +V  E    + GF+ + QL+          +    I+A I+ +    R + LS+K +  
Sbjct: 464 YIVELE--PGIEGFLPNTQLSFEKENEKVEFKENEEIEAKIIKINPQTRRIHLSIKALMR 521

Query: 944 DRFRE 948
           ++  +
Sbjct: 522 EKLEQ 526



 Score = 48.5 bits (114), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 43/280 (15%)

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
            +++I + V G +  IN EKK L + +R     I +K  +    N+   I    IV G+I 
Sbjct: 146  KYYINRRVEGKIKKINPEKKQLIISVRE----ILEKKQEEERANLWEKIKNSQIVRGKII 201

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
            KI      + V +G  + G V   E+    + + +  Y          Y  G  VK K+L
Sbjct: 202  KIDDE--KITVDLGLGITGEVEKDEISWFPIRN-IRRY----------YSVGDIVKAKIL 248

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
             ++                      + ++ LS     P       E      IV+G +  
Sbjct: 249  SLN--------------------EDSKTAKLSIKQTQPNPWSVFKEKYPEGSIVEGEIIK 288

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            +   G  ++    L   + +S +S G   + + E  IG  V  +VL+++ ++K++ +++K
Sbjct: 289  IA--GGLVVKVDNLIGYIPVSEISWGRPSNIKNELKIGDKVRLKVLNIDEINKKIFLSMK 346

Query: 1449 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              +       +     N  +GDIV G+I  +  +G+FI I
Sbjct: 347  QVEPNPWDVID----KNYKIGDIVSGKITNITEFGIFIEI 382


>gi|86157945|ref|YP_464730.1| 30S ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|197122752|ref|YP_002134703.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. K]
 gi|220917535|ref|YP_002492839.1| 30S ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|85774456|gb|ABC81293.1| SSU ribosomal protein S1P [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196172601|gb|ACG73574.1| ribosomal protein S1 [Anaeromyxobacter sp. K]
 gi|219955389|gb|ACL65773.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 568

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 150/354 (42%), Gaps = 32/354 (9%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  ++K G ++KG V  +  +GA +   GG+  L  +  MS   I  P + F+VG E+  
Sbjct: 197 TLKNLKEGAILKGVVKNLTDYGAFIDL-GGIDGLLHVTDMSWGRIGHPSEMFEVGQEVRV 255

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL     S+R+++  K+            Y   T      G +  +  +G F+    GV
Sbjct: 256 VVLKFDPTSERVSLGLKQIQEDPWHRADEKYPVGTR---VKGKVVSLTDYGAFIELEQGV 312

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
           +G    SE+      + PS + +VG  V+  ++   P ++RI+L        P  + ED 
Sbjct: 313 EGLVHVSEMSWTKRVKHPSKLVNVGDQVEAVVLDIDPKAKRISLGMKQIEANPWTLLEDK 372

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
              +G+ + G V  VT   + V     G  +G     H++D     +  + +  PG +F 
Sbjct: 373 Y-PIGTTIRGEVRNVTDFGIFV-----GVEEGIDGLVHVSD----ISWTERIKHPGEKFK 422

Query: 726 Q-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGC 777
           +       +L +D E+    L  K + ++    L    S  HP  + V G V  + + G 
Sbjct: 423 KGDVVEAVVLNIDVENERFSLGIKQAHVDPWTTL----SERHPVGARVKGRVTKVTDFGA 478

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           FV     + G    S+  D +  +       GQ V   ++D++ +  ++ LS+K
Sbjct: 479 FVEIEPGIEGLVHVSEMKDERVENPRDVVQEGQEVEVKVIDMDLQDRKVALSMK 532



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 108/549 (19%), Positives = 220/549 (40%), Gaps = 79/549 (14%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            + +G + ++ K    +      +G  P SE    PG EP+    VG  V+  + S     
Sbjct: 35   VVNGTVIQLTKDYAVIDIGYKSEGQVPISEFSTAPGGEPA--VKVGDKVEVLVES----- 87

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-----KGTIPTE 702
             R N + M+  ++   D +     + +          V+V  +  G S     K  +P  
Sbjct: 88   -RENDTGMVVLSKEKADKMRIWDEISAACERDELVEGVIVGRVKGGLSVDIGVKAFLPGS 146

Query: 703  HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
             +   +     +  +I   ++F +++  + +  N++LS +  L    ++L  +   ++  
Sbjct: 147  QV--DIRPVRNLDKLIGEKFKF-KVIKFNKKRGNIVLSRRVLLEKEREELKKETLKNLKE 203

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             +++ G V N+ + G F+  LG + G    +    G+    S+ + VGQ VR  +L  + 
Sbjct: 204  GAILKGVVKNLTDYGAFID-LGGIDGLLHVTDMSWGRIGHPSEMFEVGQEVRVVVLKFDP 262

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
             + R++L LKQ                      + +   H   E      + +G+ ++GK
Sbjct: 263  TSERVSLGLKQ----------------------IQEDPWHRADE-----KYPVGTRVKGK 295

Query: 882  VHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 935
            V    D+G  +  E+      H     +    +     V  G  ++A +LD+    + + 
Sbjct: 296  VVSLTDYGAFIELEQGVEGLVHVSEMSWTKRVKHPSKLVNVGDQVEAVVLDIDPKAKRIS 355

Query: 936  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 995
            L +K +      EAN     + K           +  T+   V  V +  + + + E   
Sbjct: 356  LGMKQI------EANPWTLLEDK---------YPIGTTIRGEVRNVTDFGIFVGVEEGID 400

Query: 996  SIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETETSSSK 1053
             + + S   +  + K P ++F  G  V A V+ +   +   R  L +K A  +  T+ S+
Sbjct: 401  GLVHVSDISWTERIKHPGEKFKKGDVVEAVVLNIDVENE--RFSLGIKQAHVDPWTTLSE 458

Query: 1054 RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 1113
            R      + VG+ V+  +T++      ++   G  G +H++E+ D++   VEN     + 
Sbjct: 459  R------HPVGARVKGRVTKVTDFGAFVEIEPGIEGLVHVSEMKDER---VENPRDVVQE 509

Query: 1114 GQTVTARII 1122
            GQ V  ++I
Sbjct: 510  GQEVEVKVI 518



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 146/345 (42%), Gaps = 39/345 (11%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
           +L+ ++EG +L   VK++ D+G  +  G     G L   +++   G    P  + +    
Sbjct: 197 TLKNLKEGAILKGVVKNLTDYGAFIDLG--GIDGLLHVTDMS--WGRIGHPSEMFE---- 248

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL------VP-GMMVSTRVQSILENGVM 338
            + +  +VV L  DP   S+ V+  LK I  D         P G  V  +V S+ + G  
Sbjct: 249 -VGQEVRVVVLKFDP--TSERVSLGLKQIQEDPWHRADEKYPVGTRVKGKVVSLTDYGAF 305

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  T    +     N   +V A +L +DP ++ + L +     NP
Sbjct: 306 IELEQGVEGLVHVSEMSWTKRVKHPSKLVNVGDQVEAVVLDIDPKAKRISLGMKQIEANP 365

Query: 394 Y-LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVR 451
           + LL ++ P      G++ + +         G+ + +          V +SD++  E ++
Sbjct: 366 WTLLEDKYPIGTTIRGEVRNVTD-------FGIFVGVEE---GIDGLVHVSDISWTERIK 415

Query: 452 KLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAV 509
              +K+K+G  V   +L      E  + GI +A        T S+  P G  VKG+V  V
Sbjct: 416 HPGEKFKKGDVVEAVVLNIDVENERFSLGIKQAHVDPWT--TLSERHPVGARVKGRVTKV 473

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
             FGA V+   G++ L  +  M +  +  P    + G E+  +V+
Sbjct: 474 TDFGAFVEIEPGIEGLVHVSEMKDERVENPRDVVQEGQEVEVKVI 518



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 130/313 (41%), Gaps = 39/313 (12%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V   +L  DPTS  V L L     +P+   +   P       KV  + D    + +++
Sbjct: 251 QEVRVVVLKFDPTSERVSLGLKQIQEDPWHRADEKYPVGTRVKGKVVSLTDYGAFIELEQ 310

Query: 422 GLGLLLDIP----STPVSTPA-YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
           G+  L+ +     +  V  P+  V + D  E  V  ++ K K  S      LG + +E  
Sbjct: 311 GVEGLVHVSEMSWTKRVKHPSKLVNVGDQVEAVVLDIDPKAKRIS------LGMKQIEAN 364

Query: 477 ATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
              +L+            D  P G  ++G+V  V  FG  V    G+  L  +  +S  E
Sbjct: 365 PWTLLE------------DKYPIGTTIRGEVRNVTDFGIFVGVEEGIDGLVHVSDISWTE 412

Query: 536 IVK-PGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
            +K PG+KFK G   E V   + V+++R ++  K+  V      LS       R+   G 
Sbjct: 413 RIKHPGEKFKKGDVVEAVVLNIDVENERFSLGIKQAHV-DPWTTLSERHPVGARV--KGR 469

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +TK+   G FV    G++G    SE+  +    P  +   GQ V+ +++      R++ L
Sbjct: 470 VTKVTDFGAFVEIEPGIEGLVHVSEMKDERVENPRDVVQEGQEVEVKVIDMDLQDRKVAL 529

Query: 653 SFMMKPTRVSEDD 665
           S         EDD
Sbjct: 530 SMKAVNRDGGEDD 542



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 5/118 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +++L    I++G VKN+T  G FI L   +D  + ++++S G +  P + F +G+ V   
Sbjct: 198  LKNLKEGAILKGVVKNLTDYGAFIDLG-GIDGLLHVTDMSWGRIGHPSEMFEVGQEVRVV 256

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            VL  +P S+RV + LK        +++        VG  V G++  +  YG FI +E 
Sbjct: 257  VLKFDPTSERVSLGLKQIQEDPWHRAD----EKYPVGTRVKGKVVSLTDYGAFIELEQ 310



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 128/317 (40%), Gaps = 37/317 (11%)

Query: 998  GYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
            G   V+D +  +   P + F  GQ V   V+ L    T+ R+ L LK I E       RA
Sbjct: 228  GLLHVTDMSWGRIGHPSEMFEVGQEV--RVVVLKFDPTSERVSLGLKQIQE---DPWHRA 282

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
             +K  Y VG+ V+ ++  +      ++   G  G +H++E++  K   V++      +G 
Sbjct: 283  DEK--YPVGTRVKGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKR--VKHPSKLVNVGD 338

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
             V A ++    K       + ++   P  L            E    IG  + G V  V 
Sbjct: 339  QVEAVVLDIDPKAKRISLGMKQIEANPWTLL-----------EDKYPIGTTIRGEVRNVT 387

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            +    + +   +   + + D ++    ++    +F  G  V   VL+I+ E +   L   
Sbjct: 388  DFGIFVGVEEGIDGLVHVSDISW-TERIKHPGEKFKKGDVVEAVVLNIDVENERFSL--- 443

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTE 1293
                GI    VD       T + E   VG R+   ++ V   G  V+I P + G VH +E
Sbjct: 444  ----GIKQAHVD-----PWTTLSERHPVGARVKGRVTKVTDFGAFVEIEPGIEGLVHVSE 494

Query: 1294 LKNICVSDPLSGYDEGQ 1310
            +K+  V +P     EGQ
Sbjct: 495  MKDERVENPRDVVQEGQ 511



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 114/267 (42%), Gaps = 54/267 (20%)

Query: 1271 LSGVGGLVVQIGPHLYGRV-HFTELKNICVS--------DPLS-----GYDEGQFDPLSG 1316
            L G+ GL+  +    +GR+ H +E+  +           DP S     G  + Q DP   
Sbjct: 223  LGGIDGLL-HVTDMSWGRIGHPSEMFEVGQEVRVVVLKFDPTSERVSLGLKQIQEDPWHR 281

Query: 1317 YDE----GQFVKCKV---------LEISRTVRGTFHV-ELSLRSSLDGMSS-TNSSD--- 1358
             DE    G  VK KV         +E+ + V G  HV E+S    +   S   N  D   
Sbjct: 282  ADEKYPVGTRVKGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKRVKHPSKLVNVGDQVE 341

Query: 1359 -LSTDVDTPGKHLEK------------IEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDA 1404
             +  D+D   K +              +ED  P    ++G V+NVT  G F+ +   +D 
Sbjct: 342  AVVLDIDPKAKRISLGMKQIEANPWTLLEDKYPIGTTIRGEVRNVTDFGIFVGVEEGIDG 401

Query: 1405 KVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
             V +S++S    ++ P ++F  G +V   VL+++  ++R  + +K      A       L
Sbjct: 402  LVHVSDISWTERIKHPGEKFKKGDVVEAVVLNIDVENERFSLGIK-----QAHVDPWTTL 456

Query: 1464 SNLH-VGDIVIGQIKRVESYGLFITIE 1489
            S  H VG  V G++ +V  +G F+ IE
Sbjct: 457  SERHPVGARVKGRVTKVTDFGAFVEIE 483


>gi|160903054|ref|YP_001568635.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360698|gb|ABX32312.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
          Length = 532

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 157/349 (44%), Gaps = 17/349 (4%)

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           +K  A E +  T ++ + GMV+ G V  + +FGA V+    +  L P   +S  E +   
Sbjct: 162 IKDYAEEKISQTFNEYEEGMVIDGVVEDIKNFGAFVRLNDHLNGLIPASEVSWDEKISIK 221

Query: 541 KKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
              KVG ++   ++ +  + KRI+++ K+        +   Y   +   I  G +TKI  
Sbjct: 222 DYLKVGQKVKALIIKLDREKKRISLSLKRLKENPWKTVDEKYPIGS---IVQGTVTKILP 278

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-- 656
            G  V+   G++G    +E+        S + +VG  V+ +I++    +++INLS+    
Sbjct: 279 FGFTVKIDEGLEGLVHETEIFWGRKGRISDLVNVGDDVQVKILNIDKENKKINLSYKQVS 338

Query: 657 -KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
             P    E+   + G++V+G V+ V  N  ++  I +G +     +E   D ++  + + 
Sbjct: 339 GDPWENIEEKYYE-GNIVTGTVEKVLDNGAIIK-IDEGITGFLHVSELSWDFVDDISTVL 396

Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           +  +        +  DN+   + LS + +  N  ++    +  I P   V G +   ++ 
Sbjct: 397 NEKQKIKVKIIKIDKDNKR--MRLSVRETKENPWKKA---SKEIKPGDTVKGKIIRFLDK 451

Query: 776 GCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           G  V   G  +  + P SKA    ++ L +TY +G  + + +L++  E 
Sbjct: 452 GAIVLIDGYEVEAYLPASKASTNSKS-LEETYSIGDQIEAKVLEIGLEN 499



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 109/274 (39%), Gaps = 26/274 (9%)

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAIL 577
            PG +  L P   + +              E + +V+    K I V+ K     ++  I 
Sbjct: 128 LPGSLSLLSPKDDLPQ-------------GEKMAKVISKNGKNIVVSIKDY---AEEKIS 171

Query: 578 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
            ++ E  + ++  G +  I+  G FVR  + + G  P SE+  D          VGQ VK
Sbjct: 172 QTFNEYEEGMVIDGVVEDIKNFGAFVRLNDHLNGLIPASEVSWDEKISIKDYLKVGQKVK 231

Query: 638 CRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
             I+      +RI+LS   + +    + D+   +GS+V G V  + P    V  I +G  
Sbjct: 232 ALIIKLDREKKRISLSLKRLKENPWKTVDEKYPIGSIVQGTVTKILPFGFTVK-IDEGLE 290

Query: 696 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 754
                TE           +  ++  G +   ++L +D E+  + LS K     S     +
Sbjct: 291 GLVHETEIFWG---RKGRISDLVNVGDDVQVKILNIDKENKKINLSYKQV---SGDPWEN 344

Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
                +  ++V G V  +++ G  ++    +TGF
Sbjct: 345 IEEKYYEGNIVTGTVEKVLDNGAIIKIDEGITGF 378



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 42/188 (22%)

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           V+ G V +I   G FVR    L G  P S+    ++  +     VGQ V++ I+ ++ E 
Sbjct: 182 VIDGVVEDIKNFGAFVRLNDHLNGLIPASEVSWDEKISIKDYLKVGQKVKALIIKLDREK 241

Query: 824 GRITLS---LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
            RI+LS   LK++   + D                              E + IGS+++G
Sbjct: 242 KRISLSLKRLKENPWKTVD------------------------------EKYPIGSIVQG 271

Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT-------VESGSVIQAAILDVAKAERL 933
            V +   FG  V  +E   + G +   ++           V  G  +Q  IL++ K  + 
Sbjct: 272 TVTKILPFGFTVKIDEG--LEGLVHETEIFWGRKGRISDLVNVGDDVQVKILNIDKENKK 329

Query: 934 VDLSLKTV 941
           ++LS K V
Sbjct: 330 INLSYKQV 337


>gi|262372480|ref|ZP_06065759.1| ribosomal protein S1 [Acinetobacter junii SH205]
 gi|262312505|gb|EEY93590.1| ribosomal protein S1 [Acinetobacter junii SH205]
          Length = 560

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKS 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G S G     HL+D    E         K G   
Sbjct: 361 HEKGEKVSGTIKSITDFGIFI-----GLSGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E    +H   + G  V G + ++  FG  +   GG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKSH---EKGEKVSGTIKSITDFGIFIGLSGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + ++     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 AKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 43.5 bits (101), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 147/362 (40%), Gaps = 49/362 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L  ++EG  +T  +K++ D+G  +  G     G L   ++A    ++    V+ G  +  
Sbjct: 186 LAQLEEGQTVTGTIKNLTDYGAFVDLG--GIDGLLHITDMAWKRIKHPSEVVEVGQEVTV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G +V  RV ++ + G
Sbjct: 244 KVLKFDRERNRVSLGLKQLGEDP------------WLAIMSRYPKGSIVKARVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
                     G V +  + +T    +         +V+  +L VD   R + L +     
Sbjct: 292 CFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEV 450
           NP+    ++     KV      S  ++     G+ + +          V +SD++  E+ 
Sbjct: 352 NPWEEFAKSHEKGEKV------SGTIKSITDFGIFIGLSG---GIDGLVHLSDISWNEQG 402

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEG--LATGI--LKASAFEGLVFTHSDVKPGMVVKGKV 506
            +  ++YK+G  V   IL     EG  ++ GI  L +  F   +  +   + G +VKG V
Sbjct: 403 EEAIRRYKKGDTVEAVILSV-DAEGNRISLGIKQLNSDPFNDFLAAN---ERGALVKGTV 458

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
            AVD+ GA V+    ++A      ++   +    K  +VG E+  +++ V  KS+ I ++
Sbjct: 459 TAVDAKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLS 518

Query: 565 HK 566
            K
Sbjct: 519 IK 520


>gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 401

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKAIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 38/248 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGKA+   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKAIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
             +   G  V IG  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  TNF--GSFVDIG-GVDGLVHISEISYKHVDKPS--------DVLK---VGQDVKVKVIGI 253

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +                  P    +    L+   +++G VK++T
Sbjct: 254  DND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLT 293

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            + G F+ ++  +   V +S +S  +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 294  NFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQA 353

Query: 1451 DSRTASQS 1458
            D   AS S
Sbjct: 354  DPENASSS 361



 Score = 47.0 bits (110), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 44/214 (20%)

Query: 1306 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1360
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1361 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1394
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKAIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              Q+     S+L+ GD++ G++K + ++G F+ +
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEV 301



 Score = 40.4 bits (93), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 141/365 (38%), Gaps = 53/365 (14%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D           G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKPGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+    +P   +++     + +K  I  
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGF----LPASLISNRF--VSDLKPYIGK 155

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
             +  ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 156 AIKV-KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
           + G +   +++   V+        G  ++  +L++  ++R + LS+K    +    +N  
Sbjct: 305 IQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQADPENASSSNDR 364

Query: 953 RQAQK 957
            +A++
Sbjct: 365 PRARR 369


>gi|312864811|ref|ZP_07725042.1| putative ribosomal protein S1 [Streptococcus downei F0415]
 gi|311099938|gb|EFQ58151.1| putative ribosomal protein S1 [Streptococcus downei F0415]
          Length = 400

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 163/372 (43%), Gaps = 35/372 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG----GVKALCPLPHMSEFEI---VK 538
           FE L+ + S+V PG +V  +V+ VD+  A V   G    GV  L  L +  E +I   VK
Sbjct: 4   FEDLLNSVSEVNPGDIVTAEVLTVDNGQANVIIEGTGIEGVLTLRELTNDREADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  AGDKIEV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---- 653
           K G  V F  G++GF P S L  D     ++   VGQ ++ +I    PA  R  LS    
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTEQFVGQDIEAKIKEIDPAENRFILSRREV 175

Query: 654 FMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
              K     ++   KL  GS+V+G V  +T     V +   G   G +    L+ H E  
Sbjct: 176 VEEKNAAARQEIFSKLEVGSIVTGKVARLTSFGAFVDL---GGVDGLVHVTELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E D ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVSVGDEIDVKVLAIDEEAGRISLSLKATTPG-----PWDGVEQKLAAGDVIDGT 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V+  +L V+++  R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDADAERVSL 345

Query: 829 SLKQSCCSSTDA 840
           S+K       DA
Sbjct: 346 SIKALQERPADA 357



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 34/196 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G IV G+++++ S   G  V +G  + G VH TEL +           E    P S    
Sbjct: 194  GSIVTGKVARLTSF--GAFVDLG-GVDGLVHVTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  +  KVL I         + LSL+++                 TPG      + L+  
Sbjct: 240  GDEIDVKVLAIDEE---AGRISLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             ++ G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VLSV+  
Sbjct: 280  DVIDGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDAD 339

Query: 1440 SKRVEVTLKTSDSRTA 1455
            ++RV +++K    R A
Sbjct: 340  AERVSLSIKALQERPA 355



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 42/213 (19%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +   S+V G V  +   G FV  LG + G    ++    +         VG  +   +
Sbjct: 189 SKLEVGSIVTGKVARLTSFGAFVD-LGGVDGLVHVTELSHERNVSPKSVVSVGDEIDVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GRI+LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRISLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV-A 928
           VI+G V    DFG  V  E    + G +   Q++   VE+       G  +Q  +L V A
Sbjct: 281 VIDGTVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDA 338

Query: 929 KAERLVDLSLKTVFIDRFREANSNRQAQKKKRK 961
            AER V LS+K +   + R A++  Q Q +KR+
Sbjct: 339 DAER-VSLSIKAL---QERPADAEGQGQGEKRQ 367



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L    IV G V  +TS G F+ L   +D  V ++ LS     SP+    +G  +  +VL+
Sbjct: 191  LEVGSIVTGKVARLTSFGAFVDLG-GVDGLVHVTELSHERNVSPKSVVSVGDEIDVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + R+ ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 250  IDEEAGRISLSLKATTPGPWDGVE----QKLAAGDVIDGTVKRLTDFGAFVEV 298


>gi|113970262|ref|YP_734055.1| 30S ribosomal protein S1 [Shewanella sp. MR-4]
 gi|114047549|ref|YP_738099.1| 30S ribosomal protein S1 [Shewanella sp. MR-7]
 gi|117920422|ref|YP_869614.1| 30S ribosomal protein S1 [Shewanella sp. ANA-3]
 gi|113884946|gb|ABI38998.1| SSU ribosomal protein S1P [Shewanella sp. MR-4]
 gi|113888991|gb|ABI43042.1| SSU ribosomal protein S1P [Shewanella sp. MR-7]
 gi|117612754|gb|ABK48208.1| SSU ribosomal protein S1P [Shewanella sp. ANA-3]
          Length = 555

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 143/345 (41%), Gaps = 20/345 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E T      G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENTK---LTGRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-- 669
              SE+   +    PS + ++G  V+  ++      RRI+L      T   +D   +   
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E    
Sbjct: 364 GDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K +  +      +D       ++V+G V  +   G  V     + 
Sbjct: 419 VLSVDPERERISLGVKQTEDDPFNAYLADKKK---GTIVNGTVSAVDAKGVTVELADTVE 475

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+   +     +  D S  Y VG ++ +  + V+ +   I+LS+K
Sbjct: 476 GYIRVADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIK 520



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 101/471 (21%), Positives = 193/471 (40%), Gaps = 69/471 (14%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           +PG +V+G V+A+++   +V    G+K+  P+P   +F+  +   +  VG E+   +  V
Sbjct: 19  RPGSIVRGTVVAIEN--GMVLVDAGLKSESPIP-AEQFKNAQGVLEIAVGDEVDVALDSV 75

Query: 557 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +       ++ +K        +L    E  + +I    I   +  G F    NG++ F P
Sbjct: 76  EDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIG---IINGKVKGGFTVELNGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            S + + P  + + + +     +V+K  +  +++  SRR  +       R +  + ++ G
Sbjct: 133 GSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEG 192

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
             V G+V  +T     V +   G   G +    +A   ++H +    ++  G E + ++L
Sbjct: 193 QAVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINVKVL 246

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNIIETGCFVRFLG 783
             D E + + L  K        QL  D     S  +P N+ + G V N+ + GCFV    
Sbjct: 247 KYDRERTRVSLGLK--------QLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIEE 298

Query: 784 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ C ++    
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQ-CKTNPWDD 356

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
           F               ++++N            G  + GK+    DFG+ +  +   D  
Sbjct: 357 F---------------ATRYNK-----------GDKVSGKIKSITDFGIFIGLDGGIDGL 390

Query: 902 GFITHHQLAG------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             ++     G      +  + G  I A +L V      + L +K    D F
Sbjct: 391 VHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERERISLGVKQTEDDPF 441



 Score = 43.5 bits (101), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 138/333 (41%), Gaps = 56/333 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ V G V  + +  A + +   +   L I D A++    PSE+       ++G  +   
Sbjct: 192  GQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEINVK 244

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++E+  + L L+   +   D  ++IS         E   + GR++ +     G  V
Sbjct: 245  VLKYDRERTRVSLGLKQLGE---DPWLEISK-----RYPENTKLTGRVTNLTDY--GCFV 294

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VL+I    R    
Sbjct: 295  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNLGDEVEVLVLDIDEERR---R 341

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + L L+       +    D +T  +   K             V G +K++T  G FI L 
Sbjct: 342  ISLGLKQC----KTNPWDDFATRYNKGDK-------------VSGKIKSITDFGIFIGLD 384

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +G  E    E+  G  +   VLSV+P  +R+ + +K ++    +  
Sbjct: 385  GGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERERISLGVKQTEDDPFNAY 444

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                L++   G IV G +  V++ G+ + + +T
Sbjct: 445  ----LADKKKGTIVNGTVSAVDAKGVTVELADT 473



 Score = 40.4 bits (93), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 79/387 (20%), Positives = 151/387 (39%), Gaps = 49/387 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEINV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPD-TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            V   DR R  V      L  DP   +SK   ++ K            ++ RV ++ + G
Sbjct: 244 KVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTK------------LTGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N   +V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351

Query: 392 NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      +N+      K+  I D    + +D G+  L+ +     +      +S+   
Sbjct: 352 NPWDDFATRYNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSE--- 408

Query: 448 EEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
                    YK+G  +   +L      E ++ G+ K +  +      +D K G +V G V
Sbjct: 409 ---------YKKGDEIHAVVLSVDPERERISLGV-KQTEDDPFNAYLADKKKGTIVNGTV 458

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
            AVD+ G  V+    V+    +  +S   I      + VG  +  + +GV  K++ I+++
Sbjct: 459 SAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLS 518

Query: 565 HKKTLVKSKLAILSSYAEATDRLITHG 591
            K      +  ++++  +  D +I++ 
Sbjct: 519 IKAKDEAEEKEVMATLNKQEDAVISNA 545


>gi|17552198|ref|NP_498398.1| Protein LET-716 [Caenorhabditis elegans]
 gi|351047543|emb|CCD63223.1| Protein LET-716 [Caenorhabditis elegans]
          Length = 1743

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 189/889 (21%), Positives = 352/889 (39%), Gaps = 105/889 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG      ++ +   + +++F   + GL +K+   ++   +KA E           
Sbjct: 13  FPRGGGS-----DKPKPLNKSNSDFVGTKGGLKRKSAAPEQHEAKKAKEE---------- 57

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN 173
             S  +P+      ++    G+  +GVV+EV + D V+    G   +   A  +      
Sbjct: 58  --SSWIPKVEENCFIE----GLTGFGVVSEVFD-DGVLLHTAGTHTVKIHASEVSKKF-T 109

Query: 174 EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 233
           E+   E   +   F +GQ+V   V+     K+   K K+  +   + L K LS   +  G
Sbjct: 110 ELFNEEKIEIKNAFQLGQMVPFRVIS---KKQGNDKGKVKGTCNPARLNKHLSPNMLAAG 166

Query: 234 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV 293
           +VL   V SIE+ G IL  GL   TGF+ ++         +K G+ L  +VR +  T +V
Sbjct: 167 LVLHTAVVSIEEKGAILDVGLDQITGFIEKSQF---PAAGLKEGMPL--IVRVLSSTSRV 221

Query: 294 VYLSS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGT 348
           V ++S    D   ++ C     + + ++ L+PG ++        +  GV+++      G 
Sbjct: 222 VKVTSFVEQDNLNMTSC-----EKLQLNHLMPGTILECEPTGDAVTAGVIVNIGNGLKGI 276

Query: 349 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPS 403
           +     +   P    +N     K + A ++F    S+ + L  +P +     +  R    
Sbjct: 277 LP----RRNLPPRLRENPEKLGKAIRAIVMFCQQNSKILVLNAHPDIVAASRIEKRTSFE 332

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSC 462
            + +GD    + +  +     +   +P+          +S     E+  ++  +Y+ G+ 
Sbjct: 333 GISIGDKVKCTVIDVLPTKSMVYFALPAIDGKKSLVTAVSSRGLLEKPDQVSTEYEVGTE 392

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
              R+ GFR+ +   T   +       +  + D K G V+  +V  V   G        V
Sbjct: 393 KLCRVTGFRYADRSITISTRKDILNQKITKYQDAKCGDVLDARVHHVAKSGVYFMVCNFV 452

Query: 523 KALCPLPHMSEFEIVKPGKK----FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
           KA  PL  +S+  +  P +K    +KVG E+  RV  +  + K + VT +++++  K   
Sbjct: 453 KAFAPLSMLSDKPL--PAQKMKNIYKVGTEVKCRVWQICDERKNLIVTCRESILGLKSPS 510

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVR-FYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
           ++S  E    +     I K+   G  +   +N + G   +      PG   ++ + V  V
Sbjct: 511 VNSVQELEIGVTVPCVIRKVFPTGVLLLGTFNNICGVLRKESAVHLPGTPKNNDFVVANV 570

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY---VIAK 692
            K      +   R +N S  +   + SE  LV+  +   G + +       +Y   + AK
Sbjct: 571 EKIEDNRVVFVLRDVNPSAAVANGQNSEKKLVQRPNPADGGISIGK-----IYKGSLCAK 625

Query: 693 GYSKGTIPTEHLADHLEHATVMKSVIK-----PGYEFDQLLVLDNES-SNLLLSAKYSLI 746
              K  +          +A+V   ++      P     +LL+ + E  S ++   K + I
Sbjct: 626 AGEKANVTFTGEGKKEVYASVDDHLLSDLLDAPIGLTKRLLIENKEDISTIVPMGKMAAI 685

Query: 747 NSA------------QQLPSDASHIHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSK 793
           N A             +LP     +    V+ G V  +I   G FV  +G   G     K
Sbjct: 686 NRACVKRSVASFVKGMKLPKKIDELKVGKVIVGIVGQVITNVGVFVELVG---GSGLVGK 742

Query: 794 AVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
            ++ + A + S+   VGQ +   I  +++        L   C        M + + L   
Sbjct: 743 VLERKNAKNTSELLEVGQVIVGTIESIDTTKKSF---LIDPCTDLETGELMLKKYAL--- 796

Query: 853 IAMLQSSKHNGSELKWVEGF----IIGSVIEGKVHESNDFGVVVSFEEH 897
             +L+S      E+KW+       I GS + GKV +  D   +V FE +
Sbjct: 797 -PLLESIVE---EVKWLAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841


>gi|365919802|ref|ZP_09444166.1| ribosomal protein S1 [Cardiobacterium valvarum F0432]
 gi|364578812|gb|EHM56002.1| ribosomal protein S1 [Cardiobacterium valvarum F0432]
          Length = 556

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 143/356 (40%), Gaps = 24/356 (6%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G VVK  V  +  +GA +   GGV  L  +  M+   I  P +   +G E+  +VL
Sbjct: 187 NLQEGDVVKAVVKNLTDYGAFLDI-GGVDGLLHITDMAWKRIKYPSEVVNIGDEVEVKVL 245

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQ 610
               +R  V+     + S       + +  +R      T G +T I  +G FV   +GV+
Sbjct: 246 KFDRERARVSLGLKQLGS-----DPWGDIAERYPVNSQTRGKVTNIADYGAFVEIEDGVE 300

Query: 611 GFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLV 667
           G    SE+   +    P     VGQ V   I+   P  RRI+L     +P    E D   
Sbjct: 301 GLVHVSEMDWTNKNVNPRKFVAVGQEVDVMILEIDPERRRISLGMKQCQPNPWQEFDRKF 360

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
             G  V G +  +T   V +     G   G     HL+D        ++V   + G E +
Sbjct: 361 NKGDHVKGQIKSITDFGVFI-----GLEGGIDGLIHLSDLSWDENGEEAVRHYQKGQEVE 415

Query: 726 QL-LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            + L +D E   + L  K     S     + AS     SVV G V  + E    ++    
Sbjct: 416 AIILAIDAERERISLGVKQL---SQDTFAAFASANGRGSVVKGTVSEVDERQAVIKLSDD 472

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
           + G    S+A   +  DLSK   VG  + + ++ V+ +   + LS++    +   A
Sbjct: 473 VNGILKASEAAIERVEDLSKLLSVGDEIEAKVISVDRKHKTLNLSIRAKDVADEKA 528



 Score = 48.5 bits (114), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 104/484 (21%), Positives = 185/484 (38%), Gaps = 98/484 (20%)

Query: 491 FTHSDVKPGMV---VKGKVIAVDSFGAIVQFPGGVKALCPL--PHMSEFEIVKPGKKFKV 545
           F  S+   G++   VKG    VD  G     PG +  + P+  P +SE            
Sbjct: 101 FNDSETITGIISGRVKGG-FTVDVEGVKAFLPGSLVDVRPVKDPALSE------------ 147

Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSS-YAEATDRL--------ITHGWITKI 596
           G E+ F+++ +  KR        +V S+ A+L + Y    D +        +    +  +
Sbjct: 148 GKEIDFKIIKLDQKR------NNIVISRRAVLENEYKAERDEVLKNLQEGDVVKAVVKNL 201

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
             +G F+    GV G    +++       PS + ++G  V+ +++       R++L    
Sbjct: 202 TDYGAFLDI-GGVDGLLHITDMAWKRIKYPSEVVNIGDEVEVKVLKFDRERARVSLG--- 257

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGT-IPTEHLADHLEHATVM 714
                    L +LGS   G +    P N+     +      G  +  E   + L H + M
Sbjct: 258 ---------LKQLGSDPWGDIAERYPVNSQTRGKVTNIADYGAFVEIEDGVEGLVHVSEM 308

Query: 715 ---------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
                    +  +  G E D  +L +D E   + L  K    N  Q+        +    
Sbjct: 309 DWTNKNVNPRKFVAVGQEVDVMILEIDPERRRISLGMKQCQPNPWQEFDR---KFNKGDH 365

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           V G + +I + G F+   G + G    S  + D    +  + Y  GQ V + IL +++E 
Sbjct: 366 VKGQIKSITDFGVFIGLEGGIDGLIHLSDLSWDENGEEAVRHYQKGQEVEAIILAIDAER 425

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
            RI+L +KQ     T A+F                +  NG           GSV++G V 
Sbjct: 426 ERISLGVKQ-LSQDTFAAF----------------ASANGR----------GSVVKGTVS 458

Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDL 936
           E ++   V+   +  DV G +   + A   VE        G  I+A ++ V +  + ++L
Sbjct: 459 EVDERQAVIKLSD--DVNGILKASEAAIERVEDLSKLLSVGDEIEAKVISVDRKHKTLNL 516

Query: 937 SLKT 940
           S++ 
Sbjct: 517 SIRA 520



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 190/489 (38%), Gaps = 78/489 (15%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           A  FE  + T +++KPG ++K +V+ ++     V    G+K+   +P  S+F        
Sbjct: 5   AELFEKSIET-AELKPGSIIKAEVVQINK--DFVVLNAGLKSEGFIP-ASQFTDENGNLT 60

Query: 543 FKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
             VG   E+    L        ++H+K        +L    +  D     G I+   K G
Sbjct: 61  VAVGDSVEVALEALEDGFGETKISHEKAQRIRTWEVLEQ--KFNDSETITGIISGRVK-G 117

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSF 654
            F     GV+ F P S + + P  +P+     G+ +  +I+      ++I  SRR  L  
Sbjct: 118 GFTVDVEGVKAFLPGSLVDVRPVKDPA--LSEGKEIDFKIIKLDQKRNNIVISRRAVLEN 175

Query: 655 MMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
             K  R   D+++K    G +V  VV  +T     + +   G   G +    +A   +  
Sbjct: 176 EYKAER---DEVLKNLQEGDVVKAVVKNLTDYGAFLDI---GGVDGLLHITDMA--WKRI 227

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVV 765
                V+  G E + ++L  D E + + L  K        QL SD     A     NS  
Sbjct: 228 KYPSEVVNIGDEVEVKVLKFDRERARVSLGLK--------QLGSDPWGDIAERYPVNSQT 279

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSET 823
            G V NI + G FV     + G    S+ +D    +++  K   VGQ V   IL+++ E 
Sbjct: 280 RGKVTNIADYGAFVEIEDGVEGLVHVSE-MDWTNKNVNPRKFVAVGQEVDVMILEIDPER 338

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
            RI+L +KQ C  +    F ++                          F  G  ++G++ 
Sbjct: 339 RRISLGMKQ-CQPNPWQEFDRK--------------------------FNKGDHVKGQIK 371

Query: 884 ESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
              DFGV +  E       H     +  + + A    + G  ++A IL +      + L 
Sbjct: 372 SITDFGVFIGLEGGIDGLIHLSDLSWDENGEEAVRHYQKGQEVEAIILAIDAERERISLG 431

Query: 938 LKTVFIDRF 946
           +K +  D F
Sbjct: 432 VKQLSQDTF 440



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 148/376 (39%), Gaps = 49/376 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSGIDVKP 276
           L+ +QEG V+ A VK++ D+G  L  G     G L   ++A           N G +V+ 
Sbjct: 185 LKNLQEGDVVKAVVKNLTDYGAFLDIG--GVDGLLHITDMAWKRIKYPSEVVNIGDEVEV 242

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            +L        DR R  V L        K +  D  G   +          +V +I + G
Sbjct: 243 KVL------KFDRERARVSLG------LKQLGSDPWGDIAERYPVNSQTRGKVTNIADYG 290

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    N +      ++V+  IL +DP  R + L +     
Sbjct: 291 AFVEIEDGVEGLVHVSEMDWTNKNVNPRKFVAVGQEVDVMILEIDPERRRISLGMKQCQP 350

Query: 392 NPYLLHNRA--PPSHVK--VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+   +R      HVK  +  I D    + ++ G+  L+ +          ++  +  E
Sbjct: 351 NPWQEFDRKFNKGDHVKGQIKSITDFGVFIGLEGGIDGLIHLSD--------LSWDENGE 402

Query: 448 EEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           E VR     Y++G  V   IL      E ++ G+ + S      F  ++ + G VVKG V
Sbjct: 403 EAVR----HYQKGQEVEAIILAIDAERERISLGVKQLSQDTFAAFASANGR-GSVVKGTV 457

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
             VD   A+++    V  +      +   +    K   VG E+  +V+ V  K K + ++
Sbjct: 458 SEVDERQAVIKLSDDVNGILKASEAAIERVEDLSKLLSVGDEIEAKVISVDRKHKTLNLS 517

Query: 565 HKKTLVKSKLAILSSY 580
            +   V  + A++  Y
Sbjct: 518 IRAKDVADEKAVIQDY 533


>gi|393761925|ref|ZP_10350556.1| 30S ribosomal protein S1 [Alishewanella agri BL06]
 gi|392607138|gb|EIW90018.1| 30S ribosomal protein S1 [Alishewanella agri BL06]
          Length = 559

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 148/350 (42%), Gaps = 30/350 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLEEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIPVKVL 246

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               + +R+++  K+       AI S Y E        G +T +  +GCFV    GV+G 
Sbjct: 247 KFDREKQRVSLGLKQMGEDPWAAIASRYPEGAK---ISGRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L          E+       
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL 727
           G  VSG +  +T   + +     G   G     HL+D   ++T   +V   K G E   +
Sbjct: 364 GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAV 418

Query: 728 -LVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
            L +D E   + L  K        QL  D    ++  N   ++V G V  +   G  V  
Sbjct: 419 VLQVDPERERISLGIK--------QLDEDPFNDYLADNKKGAIVKGEVSAVDAKGATVML 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G + G+   S     +  D +    VG+++ + ++ V+ +   I+LS+K
Sbjct: 471 EGGVEGYVRVSDISRDRVEDATTALKVGEAIEARLMGVDRKNRVISLSIK 520



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 138/351 (39%), Gaps = 33/351 (9%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE ++EGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLEEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEIPV 243

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            V   DR ++ V L        K + +D           G  +S RV ++ + G  +   
Sbjct: 244 KVLKFDREKQRVSLGL------KQMGEDPWAAIASRYPEGAKISGRVTNLTDYGCFVEIE 297

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLH 397
               G V +  +  T    +     N    V   +L +D   R + L L     NP+   
Sbjct: 298 EGVEGLVHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKANPWEEF 357

Query: 398 ----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               N+      K+  I D    + +D G+  L+ +          ++ +   E+ VR+ 
Sbjct: 358 AKGFNKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNSTGEDAVREF 409

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
            KK  E   V +++   R    L    L    F   +   +D K G +VKG+V AVD+ G
Sbjct: 410 -KKGDEVHAVVLQVDPERERISLGIKQLDEDPFNDYL---ADNKKGAIVKGEVSAVDAKG 465

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           A V   GGV+    +  +S   +       KVG  +  R++GV  K   ++
Sbjct: 466 ATVMLEGGVEGYVRVSDISRDRVEDATTALKVGEAIEARLMGVDRKNRVIS 516



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 171/429 (39%), Gaps = 71/429 (16%)

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVV 765
            HLE+  +   VIK          LD + +N+++S +  + + S+Q+      ++     V
Sbjct: 146  HLENKELEFKVIK----------LDQKRNNVVVSRRAVIESESSQERDQLLENLEEGMEV 195

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
             G V N+ + G FV  LG + G    +     +    S+   VG  +   +L  + E  R
Sbjct: 196  KGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEIPVKVLKFDREKQR 254

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            ++L LKQ               + E+  A + S    G++            I G+V   
Sbjct: 255  VSLGLKQ---------------MGEDPWAAIASRYPEGAK------------ISGRVTNL 287

Query: 886  NDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             D+G  V  EE      H     +   +      V  G  ++  +L++ +  R + L LK
Sbjct: 288  TDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLK 347

Query: 940  TVFIDRFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 998
                + + E A    +  +   K ++  D G+   ++  ++      + LS   +N S G
Sbjct: 348  QCKANPWEEFAKGFNKGDRVSGKIKSITDFGIFIGLDGGID----GLVHLSDISWN-STG 402

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK 1058
              +V          ++F  G  V A V+ +       R+ L +K + E   +      KK
Sbjct: 403  EDAV----------REFKKGDEVHAVVLQVDPERE--RISLGIKQLDEDPFNDYLADNKK 450

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
                 G++V+ E++ +      +    G  G + +++++ D+   VE+  +  K+G+ + 
Sbjct: 451  -----GAIVKGEVSAVDAKGATVMLEGGVEGYVRVSDISRDR---VEDATTALKVGEAIE 502

Query: 1119 ARIIAKSNK 1127
            AR++    K
Sbjct: 503  ARLMGVDRK 511



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 153/370 (41%), Gaps = 59/370 (15%)

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN--WKNDYNQHKKVN 374
           D L+  +     V+ I++N      LT +   VD+  +      T+  WK   +  + VN
Sbjct: 183 DQLLENLEEGMEVKGIVKN------LTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVN 236

Query: 375 A------RILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVRV 419
                  ++L  D   + V L L     +P+  + +R P       +V ++ D    V +
Sbjct: 237 VGDEIPVKVLKFDREKQRVSLGLKQMGEDPWAAIASRYPEGAKISGRVTNLTDYGCFVEI 296

Query: 420 DRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHL 473
           + G+ GL+    +D  +  +     V + D  E  V +++++       R RI LG +  
Sbjct: 297 EEGVEGLVHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEE-------RRRISLGLKQC 349

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
                   KA+ +E           G  V GK+ ++  FG  +   GG+  L    H+S+
Sbjct: 350 --------KANPWEEFA---KGFNKGDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSD 395

Query: 534 FEIVKPG----KKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
                 G    ++FK G E+   VL V  + +RI++  K+     +       A+     
Sbjct: 396 ISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQL---DEDPFNDYLADNKKGA 452

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G ++ ++  G  V    GV+G+   S++  D   + ++   VG+ ++ R+M     +
Sbjct: 453 IVKGEVSAVDAKGATVMLEGGVEGYVRVSDISRDRVEDATTALKVGEAIEARLMGVDRKN 512

Query: 648 RRINLSFMMK 657
           R I+LS   K
Sbjct: 513 RVISLSIKAK 522



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 137/331 (41%), Gaps = 56/331 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A++    PSE+       ++G  +   
Sbjct: 192  GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEIPVK 244

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK+ + L L+   +   D    I+     +   EG  + GR++ +     G  V
Sbjct: 245  VLKFDREKQRVSLGLKQMGE---DPWAAIA-----SRYPEGAKISGRVTNLTDY--GCFV 294

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VLEI    R    
Sbjct: 295  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNLGDAVEVMVLEIDEERR---- 340

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL G+    ++        P +   K    +    V G +K++T  G FI L 
Sbjct: 341  -----RISL-GLKQCKAN--------PWEEFAK--GFNKGDRVSGKIKSITDFGIFIGLD 384

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +   E   +EF  G  V   VL V+P  +R+ + +K  D    +  
Sbjct: 385  GGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQLDEDPFN-- 442

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              + L++   G IV G++  V++ G  + +E
Sbjct: 443  --DYLADNKKGAIVKGEVSAVDAKGATVMLE 471



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 101/483 (20%), Positives = 188/483 (38%), Gaps = 69/483 (14%)

Query: 489 LVFTHS----DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 544
           L+F  S    + +PG +VKG V+AV     +V    G+K+   +P + +F+ +    +  
Sbjct: 7   LLFEESLKAIETRPGAIVKGTVVAV--LKDVVMVDAGLKSEAAIP-VEQFKSLSGEIEVS 63

Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
           VG  +   +  ++         +   K   A +       D+    G IT   K G F  
Sbjct: 64  VGDIIDVALDAIEDGFGETLLSREKAKRHEAWVRLEKACEDKETVIGVITGKVK-GGFTV 122

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTR 660
             +G++ F P S + + P  +   + +     +V+K  +  +++  SRR  +       R
Sbjct: 123 EVDGIRAFLPGSLVDVRPVRDTLHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSQER 182

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
               + ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++ 
Sbjct: 183 DQLLENLEEGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVN 236

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNII 773
            G E   ++L  D E   + L  K        Q+  D     AS     + + G V N+ 
Sbjct: 237 VGDEIPVKVLKFDREKQRVSLGLK--------QMGEDPWAAIASRYPEGAKISGRVTNLT 288

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + GCFV     + G    S+ +D    ++  SK   +G +V   +L+++ E  RI+L LK
Sbjct: 289 DYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLK 347

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
           Q C ++    F +                          GF  G  + GK+    DFG+ 
Sbjct: 348 Q-CKANPWEEFAK--------------------------GFNKGDRVSGKIKSITDFGIF 380

Query: 892 VSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
           +  +       H     + +  + A    + G  + A +L V      + L +K +  D 
Sbjct: 381 IGLDGGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQLDEDP 440

Query: 946 FRE 948
           F +
Sbjct: 441 FND 443


>gi|199598703|ref|ZP_03212117.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001]
 gi|229552180|ref|ZP_04440905.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1]
 gi|258508384|ref|YP_003171135.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
 gi|258539595|ref|YP_003174094.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus Lc 705]
 gi|385828053|ref|YP_005865825.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
 gi|385835243|ref|YP_005873017.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus ATCC 8530]
 gi|418070603|ref|ZP_12707878.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus R0011]
 gi|421768971|ref|ZP_16205680.1| SSU ribosomal protein S1p [Lactobacillus rhamnosus LRHMDP2]
 gi|421771234|ref|ZP_16207894.1| SSU ribosomal protein S1p [Lactobacillus rhamnosus LRHMDP3]
 gi|423078075|ref|ZP_17066762.1| putative ribosomal protein S1 [Lactobacillus rhamnosus ATCC 21052]
 gi|199590391|gb|EDY98483.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001]
 gi|229314482|gb|EEN80455.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1]
 gi|257148311|emb|CAR87284.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus GG]
 gi|257151271|emb|CAR90243.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus Lc 705]
 gi|259649698|dbj|BAI41860.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
 gi|355394734|gb|AER64164.1| 30S ribosomal protein S1-like protein [Lactobacillus rhamnosus ATCC
           8530]
 gi|357540023|gb|EHJ24040.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus R0011]
 gi|357552455|gb|EHJ34228.1| putative ribosomal protein S1 [Lactobacillus rhamnosus ATCC 21052]
 gi|411185367|gb|EKS52495.1| SSU ribosomal protein S1p [Lactobacillus rhamnosus LRHMDP2]
 gi|411185820|gb|EKS52946.1| SSU ribosomal protein S1p [Lactobacillus rhamnosus LRHMDP3]
          Length = 436

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I++AS  E      + ++PG VV+GKV  + +FGA V   GGV  L  +  +S   + KP
Sbjct: 184 IVEASKAEARKEIFAKIQPGDVVEGKVARLTNFGAFVDL-GGVDGLVHVSEISFDHVDKP 242

Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
               KVG E+  +VL V     RI+++ K TL +    I       +   +  G + ++ 
Sbjct: 243 SDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAPAGS---VLTGTVKRLT 299

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G FV  + GV+G    S++  +    P+ +   GQ VK +++S  P + R+ LS 
Sbjct: 300 TFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDAHRLALSI 356



 Score = 48.1 bits (113), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            + P  +V+G V  +T+ G F+ L   +D  V +S +S  +V+ P     +G+ +  +VL+
Sbjct: 200  IQPGDVVEGKVARLTNFGAFVDLG-GVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLN 258

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V+P   R+ +++K     T  Q   +       G ++ G +KR+ ++G F+ +
Sbjct: 259  VDPDRNRISLSIKA----TLPQPWDDIEEKAPAGSVLTGTVKRLTTFGAFVEV 307



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 149/366 (40%), Gaps = 30/366 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           VK G  VK  V+AV+    IV   G GV+ + P+  +S   I       KVG +L   VL
Sbjct: 23  VKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELSTQPIDDIHDVAKVGDKLDLVVL 82

Query: 555 GVKSK-----RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
               K     +  ++ ++   +     + +  EA + +     +T + K G  V    GV
Sbjct: 83  STVGKDKENGQFLLSKRRLEAQKVWKEIQAKYEAGETITAP--VTSVVKGGLVVNA--GV 138

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDD 665
           +GF P S +  D   E  + Y  G+ ++ +I+   P+  R+ LS             ++ 
Sbjct: 139 RGFVPAS-MVEDHFVEDLNQYK-GKELEFKIIEIEPSENRLILSHRAIVEASKAEARKEI 196

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
             K+  G +V G V  +T     V +   G   G +    ++   +H      V+K G E
Sbjct: 197 FAKIQPGDVVEGKVARLTNFGAFVDL---GGVDGLVHVSEIS--FDHVDKPSDVLKVGQE 251

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              ++L +D + + + LS K +L      +   A      SV+ G V  +   G FV   
Sbjct: 252 IKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAP---AGSVLTGTVKRLTTFGAFVEVF 308

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTD 839
             + G    S+      A  +     GQ V+  +L V+ +  R+ LS+K        S+D
Sbjct: 309 PGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDAHRLALSIKALQDRPAGSSD 368

Query: 840 ASFMQE 845
           AS   E
Sbjct: 369 ASEGHE 374



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 36/204 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  GD+V G++++ L+  G  V   G  + G VH +E+    V  P         D L  
Sbjct: 200  IQPGDVVEGKVAR-LTNFGAFVDLGG--VDGLVHVSEISFDHVDKP--------SDVLK- 247

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               GQ +K KVL +         + LS++++L                   +  + IE+ 
Sbjct: 248  --VGQEIKVKVLNVDPDRN---RISLSIKATLP------------------QPWDDIEEK 284

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P   ++ G VK +T+ G F+ +   ++  V +S +S  +V +P      G+ V  +VLS
Sbjct: 285  APAGSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLS 344

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSE 1459
            V+P + R+ +++K    R A  S+
Sbjct: 345  VDPDAHRLALSIKALQDRPAGSSD 368


>gi|293608243|ref|ZP_06690546.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|375134580|ref|YP_004995230.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus PHEA-2]
 gi|427426096|ref|ZP_18916162.1| ribosomal protein S1 [Acinetobacter baumannii WC-136]
 gi|292828816|gb|EFF87178.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122025|gb|ADY81548.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus PHEA-2]
 gi|425697046|gb|EKU66736.1| ribosomal protein S1 [Acinetobacter baumannii WC-136]
          Length = 557

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVKL 669
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKA 360

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G + G     HL+D    E         K G   
Sbjct: 361 HEKGEKVSGTIKSITDFGIFI-----GLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDARGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E     H   + G  V G + ++  FG  +   GG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKAH---EKGEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 ARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 40.8 bits (94), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 80/413 (19%), Positives = 167/413 (40%), Gaps = 72/413 (17%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    + S             +  GS+++ +V    D+G      E   V 
Sbjct: 262  ------LGEDPWLAIMSR------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE-ANSN 952
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E A ++
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAH 361

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNTQ-K 1009
             + +K     ++  D G+   +N  ++                  G   +SD  +N Q +
Sbjct: 362  EKGEKVSGTIKSITDFGIFIGLNGGID------------------GLVHLSDISWNEQGE 403

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQA 1069
               +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+ 
Sbjct: 404  EAIRRYKKGDTVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANER-----GALVKG 456

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +T +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 457  TVTAVDARGATVKLADEVEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506



 Score = 40.4 bits (93), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 142/345 (41%), Gaps = 67/345 (19%)

Query: 1155 LFEECDVSI----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
            LFEE ++++    G  + G V  +D++W  +T+   LK++  I+D A   +E +E +   
Sbjct: 8    LFEESELNLNVEKGAVIQGVVVNIDSDW--VTVDTGLKSE-GIVDRAEFLNEQRELE--V 62

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN-------DNMQTFIHEGDIV 1263
             +G  V               +V+    +G+    +             ++    +G+IV
Sbjct: 63   QVGDTVD--------------VVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIV 108

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G IS  + G  G  V IGP     V      ++  + P+           + + EG+ +
Sbjct: 109  TGVISGKVKG--GFTVDIGP-----VRAFLPGSLVDTRPIRD---------TTHLEGKEL 152

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            + KV+++        +V +S R+ ++  SS +   L             +  L     V 
Sbjct: 153  EFKVIKLDAKRN---NVVVSRRAVMEAESSADREAL-------------LAQLEEGQTVT 196

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G +KN+T  G F+ L   +D  + +++++   ++ P +   +G+ V  +VL  +    RV
Sbjct: 197  GTIKNLTDYGAFVDLG-GIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             + LK    +      +  +S    G IV  ++  +  YG F  I
Sbjct: 256  SLGLK----QLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI 296


>gi|94266546|ref|ZP_01290232.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
 gi|93452821|gb|EAT03347.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
          Length = 570

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 155/367 (42%), Gaps = 36/367 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V+ G V  +  +G  V   GG+  LC +  +S   +  P K FKVG E+  +VL 
Sbjct: 198 LEEGQVLTGTVTNITDYGVFVDL-GGMDGLCHITDLSWGRVSHPSKMFKVGDEIQVKVLK 256

Query: 556 VKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +   V+     +KS     I   Y          G +  I  +G FV    GV+G  
Sbjct: 257 YDQENDKVSLGVKQLKSDPWETIQQRYPVGAK---VPGKVVSITDYGAFVELEEGVEGLV 313

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK---- 668
             SE+        PS +  VG  V+  +++  P ++RI+L   MK  + +  D+V     
Sbjct: 314 HISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKRISLG--MKQLQPNPWDMVAENYP 371

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            GS++ G +  +T   + +     G  +G     H++D     +  + +  PG ++    
Sbjct: 372 AGSIIEGKIKNITDFGIFI-----GIEEGIDGLIHVSD----LSWTERIKHPGEKYAKGE 422

Query: 726 --QLLVLDNESSNLLLSAKYSL-INSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVR 780
             Q +VL  +  N     ++SL I   Q  P +A+       + + G + N+ + G FV 
Sbjct: 423 TIQAVVLKIDKEN----ERFSLGIKQLQPDPWEAAVEKYAIGTKLEGKITNVTDFGVFVE 478

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+    +       Y VG ++ + +++V+++  +I LS+K    S  D 
Sbjct: 479 LEEGIEGLIHVSELSKEKVETPVGLYNVGDTIEARVINVSAKDRKIGLSIK--ALSGEDE 536

Query: 841 SFMQEHF 847
               E F
Sbjct: 537 EARLEDF 543



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 97/458 (21%), Positives = 180/458 (39%), Gaps = 98/458 (21%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKSKRITVT-HKKTLVKSKLAIL 577
           GV A  P   +     ++P +     +G    F++L    +R  V   ++ +++     L
Sbjct: 135 GVPAFLPYSQID----LRPVRDLDALIGESFDFKILKFNRRRNNVVISRRAIMEEARQQL 190

Query: 578 SSYAEAT--DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
            +    T  +  +  G +T I  +G FV    G+ G    ++L       PS M+ VG  
Sbjct: 191 RNEMRGTLEEGQVLTGTVTNITDYGVFVDL-GGMDGLCHITDLSWGRVSHPSKMFKVGDE 249

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
           ++ +++     + +++L      +   E       +G+ V G V  +T     V +    
Sbjct: 250 IQVKVLKYDQENDKVSLGVKQLKSDPWETIQQRYPVGAKVPGKVVSITDYGAFVEL---- 305

Query: 694 YSKGTIPTEHLADHLEHATVMK---------SVIKPGYEFD-QLLVLDNESSNLLLSAKY 743
                   E   + L H + M           ++  G E +  +L +D E+  + L  K 
Sbjct: 306 --------EEGVEGLVHISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKRISLGMK- 356

Query: 744 SLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG--QR 799
                 Q  P D  A +    S++ G + NI + G F+             + +DG    
Sbjct: 357 ----QLQPNPWDMVAENYPAGSIIEGKIKNITDFGIFIGI----------EEGIDGLIHV 402

Query: 800 ADLSKT---------YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
           +DLS T         Y  G+++++ +L ++ E  R +L +KQ      +A+         
Sbjct: 403 SDLSWTERIKHPGEKYAKGETIQAVVLKIDKENERFSLGIKQLQPDPWEAA--------- 453

Query: 851 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 910
                             VE + IG+ +EGK+    DFGV V  EE   + G I   +L+
Sbjct: 454 ------------------VEKYAIGTKLEGKITNVTDFGVFVELEEG--IEGLIHVSELS 493

Query: 911 GATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
              VE+       G  I+A +++V+  +R + LS+K +
Sbjct: 494 KEKVETPVGLYNVGDTIEARVINVSAKDRKIGLSIKAL 531



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/422 (19%), Positives = 176/422 (41%), Gaps = 74/422 (17%)

Query: 721  GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
            G  FD ++L  +   +N+++S +  +  + QQL ++    +    V+ G V NI + G F
Sbjct: 158  GESFDFKILKFNRRRNNVVISRRAIMEEARQQLRNEMRGTLEEGQVLTGTVTNITDYGVF 217

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            V  LG + G    +    G+ +  SK + VG  ++  +L  + E  +++L +KQ    S 
Sbjct: 218  VD-LGGMDGLCHITDLSWGRVSHPSKMFKVGDEIQVKVLKYDQENDKVSLGVKQ--LKSD 274

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
                +Q+ +                          +G+ + GKV    D+G  V  EE  
Sbjct: 275  PWETIQQRYP-------------------------VGAKVPGKVVSITDYGAFVELEEG- 308

Query: 899  DVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V G +   +++ +         V  G  ++ ++L+V    + + L +K +  + +    
Sbjct: 309  -VEGLVHISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKRISLGMKQLQPNPWDMVA 367

Query: 951  SNRQA-----QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY 1005
             N  A      K K   +    +G+ + ++ ++ +                   + +S  
Sbjct: 368  ENYPAGSIIEGKIKNITDFGIFIGIEEGIDGLIHV-------------------SDLSWT 408

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
               K P +++  G+++ A V+ +   +    L      I + +    + A +K  Y +G+
Sbjct: 409  ERIKHPGEKYAKGETIQAVVLKIDKENERFSL-----GIKQLQPDPWEAAVEK--YAIGT 461

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
             ++ +IT +    + ++   G  G IH++E++ +K   VE     + +G T+ AR+I  S
Sbjct: 462  KLEGKITNVTDFGVFVELEEGIEGLIHVSELSKEK---VETPVGLYNVGDTIEARVINVS 518

Query: 1126 NK 1127
             K
Sbjct: 519  AK 520



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 41/348 (11%)

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 288
           T++EG VLT  V +I D+G  +  G     G     +L+   G    P  + + V   I 
Sbjct: 197 TLEEGQVLTGTVTNITDYGVFVDLG--GMDGLCHITDLS--WGRVSHPSKMFK-VGDEI- 250

Query: 289 RTRKVVYLSSDPDTVSKCVTKDLKGI---SIDLLVP-GMMVSTRVQSILENGVMLSFLTY 344
              KV+    + D VS  V K LK     +I    P G  V  +V SI + G  +     
Sbjct: 251 -QVKVLKYDQENDKVSLGV-KQLKSDPWETIQQRYPVGAKVPGKVVSITDYGAFVELEEG 308

Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHN 398
             G V I  +  +  + +         +V   +L VDP ++ + L +     NP+ ++  
Sbjct: 309 VEGLVHISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKRISLGMKQLQPNPWDMVAE 368

Query: 399 RAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLE 454
             P   +   K+ +I D    + ++ G+  L             + +SD++  E ++   
Sbjct: 369 NYPAGSIIEGKIKNITDFGIFIGIEEGIDGL-------------IHVSDLSWTERIKHPG 415

Query: 455 KKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
           +KY +G  ++  +L   +  E  + GI  L+   +E  V  ++    G  ++GK+  V  
Sbjct: 416 EKYAKGETIQAVVLKIDKENERFSLGIKQLQPDPWEAAVEKYA---IGTKLEGKITNVTD 472

Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           FG  V+   G++ L  +  +S+ ++  P   + VG  +  RV+ V +K
Sbjct: 473 FGVFVELEEGIEGLIHVSELSKEKVETPVGLYNVGDTIEARVINVSAK 520



 Score = 41.2 bits (95), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 167/430 (38%), Gaps = 68/430 (15%)

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            DVG +V  E+  +    + +  G    G I ITE  +++  +        K+G T    +
Sbjct: 30   DVGEVVNGEVIAVGKDYVLVDIGDKSEGEIDITEFRNEEGEI------EVKVGDTFEVYV 83

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
              +  +  +K S    + IK       EI      +E D +I  R+   V          
Sbjct: 84   EKREPEGGIKLSRERAIGIK----VWEEIAR---IQEADSTIAGRIDSRVKG-------- 128

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
             +S  +    F+  S  +   +++      IG++    +L  N+ +  + +  R     I
Sbjct: 129  GLSVDIGVPAFLPYSQIDLRPVRDLDAL--IGESFDFKILKFNRRRNNVVISRR----AI 182

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
             ++      + M+  + EG ++ G ++ I     G+ V +G  + G  H T+L    VS 
Sbjct: 183  MEEARQQLRNEMRGTLEEGQVLTGTVTNITD--YGVFVDLG-GMDGLCHITDLSWGRVSH 239

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
            P   +  G        DE   ++ KVL+  +       V L ++             L +
Sbjct: 240  PSKMFKVG--------DE---IQVKVLKYDQE---NDKVSLGVKQ------------LKS 273

Query: 1362 DVDTPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESP 1419
            D        E I+   P    V G V ++T  G F+ L   ++  V +S +S       P
Sbjct: 274  D------PWETIQQRYPVGAKVPGKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHP 327

Query: 1420 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479
             K   +G  V   VL+V+P +KR+ + +K                N   G I+ G+IK +
Sbjct: 328  SKIVTVGDEVEVSVLNVDPEAKRISLGMKQLQPNPWDMV----AENYPAGSIIEGKIKNI 383

Query: 1480 ESYGLFITIE 1489
              +G+FI IE
Sbjct: 384  TDFGIFIGIE 393



 Score = 40.4 bits (93), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGR 1432
            E+     I++G +KN+T  G FI +   +D  + +S+LS    ++ P +++  G+ +   
Sbjct: 368  ENYPAGSIIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPGEKYAKGETIQAV 427

Query: 1433 VLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL ++  ++R  + +K    D   A+      +    +G  + G+I  V  +G+F+ +E
Sbjct: 428  VLKIDKENERFSLGIKQLQPDPWEAA------VEKYAIGTKLEGKITNVTDFGVFVELE 480


>gi|85859093|ref|YP_461295.1| 30S ribosomal protein S1 [Syntrophus aciditrophicus SB]
 gi|85722184|gb|ABC77127.1| SSU ribosomal protein S1P [Syntrophus aciditrophicus SB]
          Length = 586

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 154/355 (43%), Gaps = 30/355 (8%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T +++  G+VV+G +  +  +G  +   GG+  L  +  +S   I KP + F  G ++  
Sbjct: 209 TLANISEGVVVEGIIKNITDYGLFIDL-GGIDGLLHVTDISWGRITKPSEAFNRGDKITV 267

Query: 552 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           +VL    + +R+++  K+        I   Y       I  G +  +  +G FV    GV
Sbjct: 268 KVLSFDREKERVSLGLKQLTENPWEMITEQYPVGA---IVEGKVVNLTDYGAFVELAPGV 324

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
           +G    SE+        PS +  +GQ VK  I+     ++RI+L   +K T  +  + +K
Sbjct: 325 EGLIHVSEMFWTREIRHPSKVLSLGQNVKVMILDVNKENKRISLG--LKQTTDNPWETLK 382

Query: 669 L----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
                G+L+ GV+  VT   + V     G   G     H++D      ++H +    + K
Sbjct: 383 QKYPEGTLIKGVIRNVTNFGIFV-----GVEDGIDGLVHVSDISWKQRVKHPS---EIYK 434

Query: 720 PGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            G E + +++ +D ES    L  K    N  ++           S+V G V N+ E G F
Sbjct: 435 KGQEIEAVVLNIDVESEKFSLGIKQIEKNPWEEF---CEKYTAGSIVSGKVTNLTEFGIF 491

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           V     + G    S+    +    S+ + +G +V + +  V+ +  +I LS+K +
Sbjct: 492 VEVEEGIEGLVHISELSHKRVKTASEIFSIGDAVSAVVKSVDVKGRKIRLSIKDT 546



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 165/409 (40%), Gaps = 72/409 (17%)

Query: 724  FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVRF 781
            FD +L  D + +N++LS + S++   +++    +  +I    VV G + NI + G F+  
Sbjct: 178  FD-VLKYDRKRNNVVLSRR-SILEQEREVEKQETLANISEGVVVEGIIKNITDYGLFID- 234

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +    G+    S+ +  G  +   +L  + E  R++L LKQ         
Sbjct: 235  LGGIDGLLHVTDISWGRITKPSEAFNRGDKITVKVLSFDREKERVSLGLKQ--------- 285

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E    M+             E + +G+++EGKV    D+G  V       V 
Sbjct: 286  ------LTENPWEMI------------TEQYPVGAIVEGKVVNLTDYGAFVEL--APGVE 325

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            G I   ++            +  G  ++  ILDV K  + + L LK        +   N 
Sbjct: 326  GLIHVSEMFWTREIRHPSKVLSLGQNVKVMILDVNKENKRISLGLK--------QTTDNP 377

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ---KF 1010
                K++  E +   GV + V         N+ +    E +   G   VSD + +   K 
Sbjct: 378  WETLKQKYPEGTLIKGVIRNVT--------NFGIFVGVE-DGIDGLVHVSDISWKQRVKH 428

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
            P + +  GQ + A V+ +   S    L      I + E +  +   +K  Y  GS+V  +
Sbjct: 429  PSEIYKKGQEIEAVVLNIDVESEKFSL-----GIKQIEKNPWEEFCEK--YTAGSIVSGK 481

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
            +T +    + ++   G  G +HI+E++  +      +FS   IG  V+A
Sbjct: 482  VTNLTEFGIFVEVEEGIEGLVHISELSHKRVKTASEIFS---IGDAVSA 527



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 119/512 (23%), Positives = 195/512 (38%), Gaps = 88/512 (17%)

Query: 188 HVGQLVSCIVLQLDDD------KKEIGKRKIWLSLRLS----LLYKGLSLETVQEGMVLT 237
           +VG  +  +V + D +      + +  K KIW  ++ +    L  KG+ +E V+ G+ + 
Sbjct: 89  NVGDEIEVMVERRDQEGNLVLSRDKAAKMKIWDDVKAACDNNLPVKGMIVERVKGGLSV- 147

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDR 289
                  D G          + FLP       S +D++P        G  L   V   DR
Sbjct: 148 -------DIG---------ISAFLP------GSQVDIRPVRDLDKYVGQTLMFDVLKYDR 185

Query: 290 TRKVVYLS-----SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF--L 342
            R  V LS          V K  T  L  IS  ++V G+     +++I + G+ +    +
Sbjct: 186 KRNNVVLSRRSILEQEREVEKQET--LANISEGVVVEGI-----IKNITDYGLFIDLGGI 238

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLH 397
                  DI   + T P+      +N+  K+  ++L  D     V L L     NP+ + 
Sbjct: 239 DGLLHVTDISWGRITKPSEA----FNRGDKITVKVLSFDREKERVSLGLKQLTENPWEMI 294

Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE----EEVRKL 453
               P    VG I +   V   D G  + L         P    +  V+E     E+R  
Sbjct: 295 TEQYP----VGAIVEGKVVNLTDYGAFVEL--------APGVEGLIHVSEMFWTREIRHP 342

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
            K    G  V+V IL         +  LK +              G ++KG +  V +FG
Sbjct: 343 SKVLSLGQNVKVMILDVNKENKRISLGLKQTTDNPWETLKQKYPEGTLIKGVIRNVTNFG 402

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLG--VKSKRITVTHKKTLV 570
             V    G+  L  +  +S  + VK P + +K G E+   VL   V+S++ ++  K+   
Sbjct: 403 IFVGVEDGIDGLVHVSDISWKQRVKHPSEIYKKGQEIEAVVLNIDVESEKFSLGIKQIEK 462

Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
                    Y   +   I  G +T + + G FV    G++G    SEL        S ++
Sbjct: 463 NPWEEFCEKYTAGS---IVSGKVTNLTEFGIFVEVEEGIEGLVHISELSHKRVKTASEIF 519

Query: 631 HVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
            +G  V   + S     R+I LS  +K T V+
Sbjct: 520 SIGDAVSAVVKSVDVKGRKIRLS--IKDTEVN 549



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 166/408 (40%), Gaps = 62/408 (15%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G +V+  I  I    L +  G G  G +H+T+++  +   +      F  G  +T ++++
Sbjct: 216  GVVVEGIIKNITDYGLFIDLG-GIDGLLHVTDISWGR---ITKPSEAFNRGDKITVKVLS 271

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
               + +     L +L+  P  +   +             +G  V G V  + +  A + +
Sbjct: 272  FDREKERVSLGLKQLTENPWEMITEQ-----------YPVGAIVEGKVVNLTDYGAFVEL 320

Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
            +  ++  L  +   +   E++   +   +G+ V   +L +NKE K + L L+        
Sbjct: 321  APGVEG-LIHVSEMFWTREIRHPSKVLSLGQNVKVMILDVNKENKRISLGLK-------- 371

Query: 1244 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
            +T D   + ++    EG ++ G I  + +   G+ V +   + G VH +++         
Sbjct: 372  QTTDNPWETLKQKYPEGTLIKGVIRNVTNF--GIFVGVEDGIDGLVHVSDIS-------- 421

Query: 1304 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1363
              + +    P   Y +GQ ++  VL I                  D  S   S  +    
Sbjct: 422  --WKQRVKHPSEIYKKGQEIEAVVLNI------------------DVESEKFSLGIKQIE 461

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
              P +     E  +   IV G V N+T  G F+ +   ++  V +S LS   V++  + F
Sbjct: 462  KNPWEEF--CEKYTAGSIVSGKVTNLTEFGIFVEVEEGIEGLVHISELSHKRVKTASEIF 519

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSD-----SRTASQSEINNLSNL 1466
             IG  V+  V SV+   +++ +++K ++      R+ SQ  +NN  N+
Sbjct: 520  SIGDAVSAVVKSVDVKGRKIRLSIKDTEVNPEAGRSVSQY-LNNRENV 566



 Score = 44.3 bits (103), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 118/284 (41%), Gaps = 45/284 (15%)

Query: 572 SKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
           +K+ I      A D  L   G I +  K G  V    G+  F P S++ + P  +     
Sbjct: 115 AKMKIWDDVKAACDNNLPVKGMIVERVKGGLSVDI--GISAFLPGSQVDIRPVRDLDK-- 170

Query: 631 HVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL---VKLGSLVSGVVDVVT 681
           +VGQ +   ++      +++  SRR   S + +   V + +    +  G +V G++  +T
Sbjct: 171 YVGQTLMFDVLKYDRKRNNVVLSRR---SILEQEREVEKQETLANISEGVVVEGIIKNIT 227

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD-------QLLVLDN 732
              + + +       G I      D L H T +    + KP   F+       ++L  D 
Sbjct: 228 DYGLFIDL-------GGI------DGLLHVTDISWGRITKPSEAFNRGDKITVKVLSFDR 274

Query: 733 ESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
           E   + L  K    N  + +    +  +P  ++V G V N+ + G FV     + G    
Sbjct: 275 EKERVSLGLKQLTENPWEMI----TEQYPVGAIVEGKVVNLTDYGAFVELAPGVEGLIHV 330

Query: 792 SKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           S+    +     SK   +GQ+V+  ILDVN E  RI+L LKQ+ 
Sbjct: 331 SEMFWTREIRHPSKVLSLGQNVKVMILDVNKENKRISLGLKQTT 374


>gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|385817537|ref|YP_005853927.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
 gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
          Length = 403

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 14/162 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATANLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSI 351



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 108/237 (45%), Gaps = 53/237 (22%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKP--------SDALKA--- 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   +L+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATANLNEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1440 SKRVEVTLKTSDS-------------RTASQSEIN------NLSNLHVGDIVIGQIK 1477
             +R+ +++K +DS             R+ +++ +N      N +   +GDI+  Q+K
Sbjct: 344  DRRISLSIKAADSNTSSSDNNSSRPRRSRNENSVNKKYMSDNDNGFALGDIIGDQLK 400



 Score = 47.0 bits (110), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 129/312 (41%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H       +K G +   +++ +DN+   + LS K +  +  +Q     ++++ 
Sbjct: 228 EIS--YKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQA---TANLNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+K +
Sbjct: 343 SDRRISLSIKAA 354



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     +NL+ GD+  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TANLNEGDVFEGEVKSLTNFGAFVEV 302


>gi|304319916|ref|YP_003853559.1| 30S ribosomal protein S1 [Parvularcula bermudensis HTCC2503]
 gi|303298819|gb|ADM08418.1| ribosomal protein S1 [Parvularcula bermudensis HTCC2503]
          Length = 568

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 173/457 (37%), Gaps = 74/457 (16%)

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAY--VTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
           +  V  VD GL     +P      P+   V + D  +  + ++E  + E    R R    
Sbjct: 41  EKDVAIVDVGLKTEGRVPLREFGDPSKDPVAVGDQVDVFIDRIENAHGEAVISRDRARRE 100

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL-- 528
              E L          EG++F          VKG    VD  GA+   PG    + P+  
Sbjct: 101 EAWERLEHNFEDDDRVEGVIFNR--------VKGG-FTVDLGGAVAFLPGSQVDIRPVRD 151

Query: 529 --PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTL----VKSKLAILSSY 580
             P M+   I +P           F++L +  +R  I V+ +  L     + +  ++   
Sbjct: 152 AGPLMN---IPQP-----------FKILKMDKRRGNIVVSRRSVLEEDRAEHRQEVVRDL 197

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
            E  +R    G +  I  +G FV    GV G    +++       PS + +V   V  +I
Sbjct: 198 NEGDER---DGVVKNITDYGAFVELAPGVDGLLHVTDMSWSRVNHPSEVLNVNDTVSVKI 254

Query: 641 MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-----VVDVVTPNAVV--------- 686
           +   P + RI+L   MK  +    D V     + G     V ++    A V         
Sbjct: 255 IKINPETSRISLG--MKQLQPDPWDGVAAKYPIGGKFHGKVTNITDYGAFVELEDGIEGL 312

Query: 687 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 745
           V+V    + K  +P               S++  G E D  +L +D +   + L  K +L
Sbjct: 313 VHVSEMSWVKKNVPP-------------SSIVSSGQEVDVMVLEVDEQKRRVSLGLKQTL 359

Query: 746 INSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLS 803
            N  +      +  HP  S+V G V NI E G F+     + G    S    D Q  D  
Sbjct: 360 SNPWESF----AEKHPIGSIVEGEVKNITEFGLFIGIDDDMDGMVHLSDLDWDRQGDDAI 415

Query: 804 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
           + Y  G  V++ +LDV+ +  RI+L +KQ      DA
Sbjct: 416 RDYQKGDMVKAKVLDVDPDKERISLGIKQVANDPMDA 452



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 139/341 (40%), Gaps = 70/341 (20%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKA 1215
            D++ G    G V  + +  A + ++  +   L + D ++     PSE+       ++   
Sbjct: 196  DLNEGDERDGVVKNITDYGAFVELAPGVDGLLHVTDMSWSRVNHPSEV------LNVNDT 249

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQ----DGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            V+  ++ IN E   + L ++  Q    DG++ K                  +GG+    +
Sbjct: 250  VSVKIIKINPETSRISLGMKQLQPDPWDGVAAKYP----------------IGGKFHGKV 293

Query: 1272 SGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
            + +   G  V++   + G VH +E+  +  + P          P S    GQ V   VLE
Sbjct: 294  TNITDYGAFVELEDGIEGLVHVSEMSWVKKNVP----------PSSIVSSGQEVDVMVLE 343

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKN 1388
            +    R    V L L+ +L                      E   +  P   IV+G VKN
Sbjct: 344  VDEQKR---RVSLGLKQTL------------------SNPWESFAEKHPIGSIVEGEVKN 382

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            +T  G FI +   +D  V LS+L  D   +   +++  G +V  +VL V+P  +R+ + +
Sbjct: 383  ITEFGLFIGIDDDMDGMVHLSDLDWDRQGDDAIRDYQKGDMVKAKVLDVDPDKERISLGI 442

Query: 1448 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            K       +   ++ ++ L+ GD V   +  VE+ G+ + +
Sbjct: 443  K-----QVANDPMDAIAELNRGDDVTCTVTAVENGGIEVRV 478



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 34/224 (15%)

Query: 726 QLLVLDNESSNLLLSAKYSLI-NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L +D    N+++S +  L  + A+        ++      G V NI + G FV     
Sbjct: 163 KILKMDKRRGNIVVSRRSVLEEDRAEHRQEVVRDLNEGDERDGVVKNITDYGAFVELAPG 222

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    +     +    S+   V  +V   I+ +N ET RI+L +KQ            
Sbjct: 223 VDGLLHVTDMSWSRVNHPSEVLNVNDTVSVKIIKINPETSRISLGMKQ------------ 270

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
                      LQ    +G   K    + IG    GKV    D+G  V  E+      H 
Sbjct: 271 -----------LQPDPWDGVAAK----YPIGGKFHGKVTNITDYGAFVELEDGIEGLVHV 315

Query: 899 DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 942
               ++  +    + V SG  +   +L+V + +R V L LK   
Sbjct: 316 SEMSWVKKNVPPSSIVSSGQEVDVMVLEVDEQKRRVSLGLKQTL 359



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 115/279 (41%), Gaps = 52/279 (18%)

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISK 1269
            G+ V   VL ++++K+ + L L+            +SN   ++F  +   G IV G +  
Sbjct: 334  GQEVDVMVLEVDEQKRRVSLGLKQT----------LSN-PWESFAEKHPIGSIVEGEVKN 382

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
            I     GL + I   + G VH ++L           +D    D +  Y +G  VK KVL+
Sbjct: 383  ITEF--GLFIGIDDDMDGMVHLSDLD----------WDRQGDDAIRDYQKGDMVKAKVLD 430

Query: 1330 IS-RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK- 1387
            +     R +  ++      +D ++  N  D  T               +   +  G ++ 
Sbjct: 431  VDPDKERISLGIKQVANDPMDAIAELNRGDDVT--------------CTVTAVENGGIEV 476

Query: 1388 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
             V S G      RK       S+LS    E   + F +G  +  RV++++P S+R+ +++
Sbjct: 477  RVGSDGGPKAFIRK-------SDLSRDRNEQRPERFAVGDKIDARVIALDPQSRRLSLSI 529

Query: 1448 KT---SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
            K    ++ + A +   +  S   +GDI+   +K  E  G
Sbjct: 530  KAREIAEEKEAVEQFGSADSGASLGDILGAALKDTEDAG 568



 Score = 40.4 bits (93), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E + DL+      G VKN+T  G F+ L+  +D  + ++++S   V  P +   +   V+
Sbjct: 192  EVVRDLNEGDERDGVVKNITDYGAFVELAPGVDGLLHVTDMSWSRVNHPSEVLNVNDTVS 251

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             +++ + P + R+ + +K    +          +   +G    G++  +  YG F+ +E+
Sbjct: 252  VKIIKINPETSRISLGMK----QLQPDPWDGVAAKYPIGGKFHGKVTNITDYGAFVELED 307



 Score = 40.4 bits (93), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 1383 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPL 1439
             G V N+T  G F+ L   ++  V +S +S  +V+    P      G+ V   VL V+  
Sbjct: 290  HGKVTNITDYGAFVELEDGIEGLVHVSEMS--WVKKNVPPSSIVSSGQEVDVMVLEVDEQ 347

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             +RV + LK    +T S    +      +G IV G++K +  +GLFI I++
Sbjct: 348  KRRVSLGLK----QTLSNPWESFAEKHPIGSIVEGEVKNITEFGLFIGIDD 394


>gi|127512882|ref|YP_001094079.1| 30S ribosomal protein S1 [Shewanella loihica PV-4]
 gi|126638177|gb|ABO23820.1| SSU ribosomal protein S1P [Shewanella loihica PV-4]
          Length = 555

 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 143/345 (41%), Gaps = 20/345 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E T      G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENTK---LTGRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L      T   +D  +    
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFAERYAK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  V+G +  +T   + +     G   G     HL+D   + T  ++V   K G E    
Sbjct: 364 GDKVTGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEEAVSDYKKGDEISAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K +  +      +D       ++V G V  +   G  +     + 
Sbjct: 419 VLSVDPERERISLGVKQTEDDPFNAYLADKKK---GAIVTGTVTAVDAKGVTIELAETVE 475

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+   S     +  D S  Y VG +V S  + V+ +   I+LS++
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDTVESKFMGVDRKNRSISLSIR 520



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 102/471 (21%), Positives = 189/471 (40%), Gaps = 69/471 (14%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           +PG +V+G V+++ +   +V    G+K+  P+P   +F+  +   +  VG E+   +  V
Sbjct: 19  RPGSIVRGTVVSIQN--GMVLVDAGLKSESPIP-ADQFKNAQGVLEIAVGDEVDVALDSV 75

Query: 557 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +       ++ +K        +L    E  + +I  G I    K G  V   NG++ F P
Sbjct: 76  EDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI--GVINGKVKGGFTVEL-NGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            S + + P  + + + +     +V+K  +  +++  SRR  +       R +  + ++ G
Sbjct: 133 GSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEG 192

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
             V G+V  +T     V +   G   G +    +A   ++H +    ++  G E + ++L
Sbjct: 193 QAVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINVKVL 246

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNIIETGCFVRFLG 783
             D E + + L  K        QL  D     S  +P N+ + G V N+ + GCFV    
Sbjct: 247 KYDRERTRVSLGLK--------QLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIEE 298

Query: 784 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ   +  D  
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWD-- 355

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                                     + E +  G  + GK+    DFG+ +  +   D  
Sbjct: 356 -------------------------DFAERYAKGDKVTGKIKSITDFGIFIGLDGGIDGL 390

Query: 902 GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             ++     G   E+      G  I A +L V      + L +K    D F
Sbjct: 391 VHLSDISWNGTGEEAVSDYKKGDEISAVVLSVDPERERISLGVKQTEDDPF 441



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 137/333 (41%), Gaps = 56/333 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ V G V  + +  A + +   +   L I D A++    PSE+       ++G  +   
Sbjct: 192  GQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEINVK 244

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++E+  + L L+   +   D  ++IS         E   + GR++ +     G  V
Sbjct: 245  VLKYDRERTRVSLGLKQLGE---DPWLEISK-----RYPENTKLTGRVTNLTDY--GCFV 294

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VL+I    R    
Sbjct: 295  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNLGDEVEVLVLDIDEERR---R 341

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + L L+        TN  D   +    G              V G +K++T  G FI L 
Sbjct: 342  ISLGLK-----QCKTNPWDDFAERYAKGDK------------VTGKIKSITDFGIFIGLD 384

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +G  E    ++  G  ++  VLSV+P  +R+ + +K ++    +  
Sbjct: 385  GGIDGLVHLSDISWNGTGEEAVSDYKKGDEISAVVLSVDPERERISLGVKQTEDDPFNAY 444

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
                L++   G IV G +  V++ G+ I +  T
Sbjct: 445  ----LADKKKGAIVTGTVTAVDAKGVTIELAET 473


>gi|222100022|ref|YP_002534590.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359]
 gi|221572412|gb|ACM23224.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359]
          Length = 539

 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 191/443 (43%), Gaps = 56/443 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEIVKPGKKFKVGAELVFRVLGVK 557
           G  VK ++++    G  V   G V A  P  H + + E   P ++ +V   L+  +   +
Sbjct: 100 GKPVKARIVSQAKGGYNVVLKGVVPAFLPGSHSLLKREEPFPREEIEV---LILDMAHTR 156

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
                V  +K + + K+    S  +  D  +    + +I   G  V   +G++GF PRSE
Sbjct: 157 RGTRIVVSRKAIQERKVDEFFSEKKTGD--VVECTVRRINPSGIEVEVSDGIRGFIPRSE 214

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVS 674
           L  D    P  +  VGQ V  +I+      R + LS    M  P    E+    +G +VS
Sbjct: 215 LSYDTRITPEDVVQVGQKVTAKIIELDKDRRSVVLSLKQLMPDPWNKVEEKY-PVGKVVS 273

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLV 729
           G V  + P     +V  +   +G +P   +       +LE    +  ++K      +++ 
Sbjct: 274 GEVTSIHPFG--FFVRLEPGVEGLVPRSEVFWGNSRKNLEDVVKVGDLVKV-----EVIN 326

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
           +D E+  L LS + +  +  + +       H  + V G V +II  G FV     + GF 
Sbjct: 327 VDRENRKLTLSYRKAKGDPWENI---EDRYHVGNTVAGRVISIIRQGVFVELEEGIEGFV 383

Query: 790 PRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
           P S+ +  +R D   +   VG+ V+  I++++ E  R++LS+K++          QE+  
Sbjct: 384 PISE-LSWKRVDSPEEVVKVGEKVKVKIMNLDKENRRLSLSIKRT----------QENPW 432

Query: 849 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 908
              K A+ +  K               S++ G V +  + GV+V  EE+ DV GF+ ++ 
Sbjct: 433 ---KRALEELEKD--------------SIVRGTVKKVVNSGVIVQVEEY-DVEGFVPNNH 474

Query: 909 LAGATVESGSVIQAAILDVAKAE 931
           L  +  E G ++   +L +   E
Sbjct: 475 LV-SEPEEGKLLNLVVLRIDPDE 496


>gi|163748940|ref|ZP_02156191.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
 gi|161331316|gb|EDQ02204.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
          Length = 555

 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 146/345 (42%), Gaps = 20/345 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  +KG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQSIKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIDVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E T RL   G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENT-RLT--GRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS +  +G  V+  ++      RRI+L      +   +D  +    
Sbjct: 304 VHVSEMDWTNKNIHPSKVVSLGDEVEVLVLDIDEERRRISLGLKQCKSNPWDDFAERFNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI--KPGYEFDQ- 726
           G  V+G +  +T   + +     G   G     HL+D   + T  ++V   K G E    
Sbjct: 364 GDKVTGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEEAVADYKKGDEIHAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K +  +      SD       +VV+G V  +   G  V+    + 
Sbjct: 419 VLSVDPERERISLGVKQTEDDPFNAYLSDKKK---GAVVNGTVIAVDAKGVTVQLAETVE 475

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+   S     +  D S  Y VG ++ +  + V+ +   I+LS+K
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDAIEAKFMGVDRKNRTISLSIK 520



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 132/597 (22%), Positives = 230/597 (38%), Gaps = 90/597 (15%)

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            +PG +V G V+ +++   +V    G+K+  P+P   EF+  +   +  VG  +   +  V
Sbjct: 19   RPGSIVTGVVVRIENGTVLVD--AGLKSESPIP-AEEFKNAQGELEVSVGDTVHVALDAV 75

Query: 557  KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            +       ++ +K        +L    E  + +I  G I    K G  V   NG++ F P
Sbjct: 76   EDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI--GVINGKVKGGFTVEL-NGIRAFLP 132

Query: 615  RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
             S + + P  + + + +     +V+K  +  +++  SRR  +       R +  + ++ G
Sbjct: 133  GSLVDVRPVRDTAHLENKDLEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEG 192

Query: 671  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
              + G+V  +T     V +   G   G +    +A   ++H +    ++  G E D ++L
Sbjct: 193  QSIKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEIDVKVL 246

Query: 729  VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNIIETGCFVRFLG 783
              D E + + L  K        QL  D     S  +P N+ + G V N+ + GCFV    
Sbjct: 247  KYDRERTRVSLGLK--------QLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIEE 298

Query: 784  RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ C S+    
Sbjct: 299  GVEGLVHVSE-MDWTNKNIHPSKVVSLGDEVEVLVLDIDEERRRISLGLKQ-CKSNPWDD 356

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
            F                           E F  G  + GK+    DFG+ +  +   D  
Sbjct: 357  F--------------------------AERFNKGDKVTGKIKSITDFGIFIGLDGGIDGL 390

Query: 902  GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
              ++     G   E+      G  I A +L V      + L +K    D F     N   
Sbjct: 391  VHLSDISWNGTGEEAVADYKKGDEIHAVVLSVDPERERISLGVKQTEDDPF-----NAYL 445

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ- 1014
              KK+             VN  V  V    + + L E     GY  VSD + ++      
Sbjct: 446  SDKKK----------GAVVNGTVIAVDAKGVTVQLAETVE--GYLRVSDISRERIEDAST 493

Query: 1015 -FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
             +  G ++ A  M +   +    + L +KA  E E   +  +  K    V S   AE
Sbjct: 494  VYSVGDAIEAKFMGVDRKNRT--ISLSIKAKDEAEEKEAMASLNKQEESVASSAMAE 548



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 137/366 (37%), Gaps = 63/366 (17%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE +QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 186 LENLQEGQSIKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEIDV 243

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPD-TVSKCVTKDLKGISIDLLVPGMMVSTR 328
           K        V   DR R  V      L  DP   +SK   ++ +            ++ R
Sbjct: 244 K--------VLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTR------------LTGR 283

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G  +       G V +  +  T    +     +   +V   +L +D   R + 
Sbjct: 284 VTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVLVLDIDEERRRIS 343

Query: 389 LTL-----NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L L     NP+       N+      K+  I D    + +D G+  L+ +     +    
Sbjct: 344 LGLKQCKSNPWDDFAERFNKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGE 403

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKP 498
             ++D            YK+G  +   +L      E ++ G+ K +  +      SD K 
Sbjct: 404 EAVAD------------YKKGDEIHAVVLSVDPERERISLGV-KQTEDDPFNAYLSDKKK 450

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV G VIAVD+ G  VQ    V+    +  +S   I      + VG  +  + +GV  
Sbjct: 451 GAVVNGTVIAVDAKGVTVQLAETVEGYLRVSDISRERIEDASTVYSVGDAIEAKFMGVDR 510

Query: 559 KRITVT 564
           K  T++
Sbjct: 511 KNRTIS 516


>gi|398839977|ref|ZP_10597217.1| ribosomal protein S1 [Pseudomonas sp. GM102]
 gi|398111565|gb|EJM01447.1| ribosomal protein S1 [Pseudomonas sp. GM102]
          Length = 563

 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGIVKEVDAKGAIITLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 41.6 bits (96), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGIVKEVDAKGAIITL 472


>gi|229589170|ref|YP_002871289.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
 gi|229361036|emb|CAY47898.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
          Length = 563

 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQDNDKGAIVKGIVKEVDAKGAIITLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 43.9 bits (102), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 45/81 (55%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E ++D     IV+G VK V +KG  I L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQDNDKGAIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+   +N      G IV G +K V++ G  IT+
Sbjct: 429  ERISLGIKQLESDPFSEYVQDN----DKGAIVKGIVKEVDAKGAIITL 472



 Score = 40.0 bits (92), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 148/391 (37%), Gaps = 64/391 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPESTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V    D   G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEYV---QDNDKG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   +       K G E+  +++ V  K
Sbjct: 454 AIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAILSSYAEATDRL 587
           S+ I ++ K K   + K AI S   + +D +
Sbjct: 514 SRVIQLSIKSKDDAEEKEAIQSLKDKPSDSI 544


>gi|328944315|ref|ZP_08241779.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
 gi|327491234|gb|EGF23009.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
          Length = 409

 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +KPGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL 
Sbjct: 216 LKPGMKLKGTVSSIVEFGAFVDL-GGIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLD 274

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           +    +RI++  K+T       ++  Y       I  G +TK+   G FV   NGV+G  
Sbjct: 275 IDLNRERISLGLKQTTEDPWRVLVKKYPIGA---IVEGTVTKLVTFGAFVDLGNGVEGLV 331

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SE+       P+ +  VG VV+ ++M      RRI+LS 
Sbjct: 332 HISEMAKAHVDAPAQVCKVGDVVQVKVMEIDLERRRISLSI 372



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 62/390 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     +      +G  P  EL +     P  + H+G  ++  ++      
Sbjct: 48  LVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEELVHMGDTIEALVLQKEDKE 107

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +      V E    K G  V G V  V    +++ +  +G+   ++   
Sbjct: 108 GRLILSKKRAEYERAWNAVEEK--FKAGVNVEGEVIEVVKGGLILDIGLRGFLPASLVDL 165

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
                L  +  M + I+      +++ +D   +N++LS +  L  + +   S+  + + P
Sbjct: 166 RRVKDL--SAYMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEAARKAERSEILTKLKP 218

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I+E G FV  LG + G    S+         ++   VGQ V   +LD++ 
Sbjct: 219 GMKLKGTVSSIVEFGAFVD-LGGIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLDIDL 277

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 878
              RI+L LKQ+                              +E  W   V+ + IG+++
Sbjct: 278 NRERISLGLKQT------------------------------TEDPWRVLVKKYPIGAIV 307

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 931
           EG V +   FG  V     + V G +   ++A A V++       G V+Q  ++++    
Sbjct: 308 EGTVTKLVTFGAFVDL--GNGVEGLVHISEMAKAHVDAPAQVCKVGDVVQVKVMEIDLER 365

Query: 932 RLVDLSLK----TVFIDRFREANSNRQAQK 957
           R + LS+K    T+  D+  EAN    A +
Sbjct: 366 RRISLSIKAAAETLGTDQDEEANDAAPADE 395



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 141/338 (41%), Gaps = 59/338 (17%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1214
             D   G  VTG V K++++  LL I       + A+   +     P EL       H+G 
Sbjct: 41   TDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEEL------VHMGD 94

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1272
             +   VL   KE K  RL+L       S K  +     + ++     G  V G + +++ 
Sbjct: 95   TIEALVL--QKEDKEGRLIL-------SKKRAEYERAWNAVEEKFKAGVNVEGEVIEVVK 145

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            G  GL++ IG  L G +            P S  D  +   LS Y  G  ++ +V+E+ R
Sbjct: 146  G--GLILDIG--LRGFL------------PASLVDLRRVKDLSAY-MGTRIEARVIEMDR 188

Query: 1333 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1392
                  +V LS R  L+       S++ T              L P M ++G V ++   
Sbjct: 189  N---RNNVVLSRRVVLEAARKAERSEILTK-------------LKPGMKLKGTVSSIVEF 232

Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            G F+ L   +D  + +S LS  +V  P +   +G+ V  +VL ++   +R+ + LK    
Sbjct: 233  GAFVDLG-GIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLDIDLNRERISLGLK---- 287

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            +T        +    +G IV G + ++ ++G F+ + N
Sbjct: 288  QTTEDPWRVLVKKYPIGAIVEGTVTKLVTFGAFVDLGN 325


>gi|226952952|ref|ZP_03823416.1| 30S ribosomal protein S1 [Acinetobacter sp. ATCC 27244]
 gi|226836273|gb|EEH68656.1| 30S ribosomal protein S1 [Acinetobacter sp. ATCC 27244]
          Length = 560

 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVKL 669
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKA 360

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G + G     HL+D    E         K G   
Sbjct: 361 HEKGEKVSGTIKSITDFGIFI-----GLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADDIEATLKTSEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E     H   + G  V G + ++  FG  +   GG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKAH---EKGEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + ++     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 AKGATVKLADDIEATLKTSEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 44.3 bits (103), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 147/362 (40%), Gaps = 49/362 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L  ++EG  +T  +K++ D+G  +  G     G L   ++A    ++    V+ G  +  
Sbjct: 186 LAQLEEGQTVTGTIKNLTDYGAFVDLG--GIDGLLHITDMAWKRIKHPSEVVEVGQEVTV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G +V  RV ++ + G
Sbjct: 244 KVLKFDRERNRVSLGLKQLGEDP------------WLAIMSRYPKGSIVKARVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
                     G V +  + +T    +         +V+  +L VD   R + L +     
Sbjct: 292 CFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEV 450
           NP+    +A     KV      S  ++     G+ + +          V +SD++  E+ 
Sbjct: 352 NPWEEFAKAHEKGEKV------SGTIKSITDFGIFIGLNG---GIDGLVHLSDISWNEQG 402

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEG--LATGI--LKASAFEGLVFTHSDVKPGMVVKGKV 506
            +  ++YK+G  V   IL     EG  ++ GI  L +  F   +  +   + G +VKG V
Sbjct: 403 EEAIRRYKKGDTVEAVILSV-DAEGNRISLGIKQLNSDPFNDFLAAN---ERGALVKGTV 458

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
            AVD+ GA V+    ++A      ++   +    K  +VG E+  +++ V  KS+ I ++
Sbjct: 459 TAVDAKGATVKLADDIEATLKTSEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLS 518

Query: 565 HK 566
            K
Sbjct: 519 IK 520


>gi|357235302|ref|ZP_09122645.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
 gi|356883284|gb|EHI73484.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
          Length = 398

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 162/372 (43%), Gaps = 35/372 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG----GVKALCPLPHMSEFEI---VK 538
           FE L+ + S+V PG VV  +V+ VD+  A V   G    GV  L  L +  E +I   VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDNGQANVIIEGTGIEGVLTLRELTNDREADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  SGDKIEV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---- 653
           K G  V F  G++GF P S L  D     ++   VGQ ++ +I    PA  R  LS    
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTEQFVGQDIEAKIKEVDPAENRFILSRREV 175

Query: 654 FMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
              K     ++   KL  GS+V G V  +T     V +   G   G +    L+ H E  
Sbjct: 176 VEEKNAAARQEIFSKLEVGSVVKGKVARLTSFGAFVDL---GGVDGLVHVTELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E D ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVSVGDEIDVKVLAIDEEAGRISLSLKATTPG-----PWDGVEQKLAAGDVIDGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V+  +L V+++  R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDADAERVSL 345

Query: 829 SLKQSCCSSTDA 840
           S+K       DA
Sbjct: 346 SIKALQERPADA 357



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 47/220 (21%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +   SVV G V  +   G FV  LG + G    ++    +         VG  +   +
Sbjct: 189 SKLEVGSVVKGKVARLTSFGAFVD-LGGVDGLVHVTELSHERNVSPKSVVSVGDEIDVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GRI+LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRISLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV-A 928
           VI+GKV    DFG  V  E    + G +   Q++   VE+       G  +Q  +L V A
Sbjct: 281 VIDGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDA 338

Query: 929 KAERLVDLSLKTVFIDRFREANSN-----RQAQKKKRKRE 963
            AER V LS+K +   + R A++      RQ++ +++KRE
Sbjct: 339 DAER-VSLSIKAL---QERPADAEGQGEKRQSRPRRQKRE 374



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 34/196 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G +V G+++++ S   G  V +G  + G VH TEL +           E    P S    
Sbjct: 194  GSVVKGKVARLTSF--GAFVDLG-GVDGLVHVTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  +  KVL I         + LSL+++                 TPG      + L+  
Sbjct: 240  GDEIDVKVLAIDEE---AGRISLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             ++ G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VLSV+  
Sbjct: 280  DVIDGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDAD 339

Query: 1440 SKRVEVTLKTSDSRTA 1455
            ++RV +++K    R A
Sbjct: 340  AERVSLSIKALQERPA 355



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L    +V+G V  +TS G F+ L   +D  V ++ LS     SP+    +G  +  +VL+
Sbjct: 191  LEVGSVVKGKVARLTSFGAFVDLG-GVDGLVHVTELSHERNVSPKSVVSVGDEIDVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + R+ ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRISLSLKATTPGPWDGVE----QKLAAGDVIDGKVKRLTDFGAFVEV 298


>gi|294650534|ref|ZP_06727891.1| 30S ribosomal protein S1 [Acinetobacter haemolyticus ATCC 19194]
 gi|425745507|ref|ZP_18863551.1| ribosomal protein S1 [Acinetobacter baumannii WC-323]
 gi|292823531|gb|EFF82377.1| 30S ribosomal protein S1 [Acinetobacter haemolyticus ATCC 19194]
 gi|425488515|gb|EKU54850.1| ribosomal protein S1 [Acinetobacter baumannii WC-323]
          Length = 560

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVKL 669
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKA 360

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G + G     HL+D    E         K G   
Sbjct: 361 HEKGEKVSGTIKSITDFGIFI-----GLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E     H   + G  V G + ++  FG  +   GG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKAH---EKGEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + ++     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 AKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 44.3 bits (103), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 147/362 (40%), Gaps = 49/362 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L  ++EG  +T  +K++ D+G  +  G     G L   ++A    ++    V+ G  +  
Sbjct: 186 LAQLEEGQTVTGTIKNLTDYGAFVDLG--GIDGLLHITDMAWKRIKHPSEVVEVGQEVTV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G +V  RV ++ + G
Sbjct: 244 KVLKFDRERNRVSLGLKQLGEDP------------WLAIMSRYPKGSIVKARVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
                     G V +  + +T    +         +V+  +L VD   R + L +     
Sbjct: 292 CFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEV 450
           NP+    +A     KV      S  ++     G+ + +          V +SD++  E+ 
Sbjct: 352 NPWEEFAKAHEKGEKV------SGTIKSITDFGIFIGLNG---GIDGLVHLSDISWNEQG 402

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEG--LATGI--LKASAFEGLVFTHSDVKPGMVVKGKV 506
            +  ++YK+G  V   IL     EG  ++ GI  L +  F   +  +   + G +VKG V
Sbjct: 403 EEAIRRYKKGDTVEAVILSV-DAEGNRISLGIKQLNSDPFNDFLAAN---ERGALVKGTV 458

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
            AVD+ GA V+    ++A      ++   +    K  +VG E+  +++ V  KS+ I ++
Sbjct: 459 TAVDAKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLS 518

Query: 565 HK 566
            K
Sbjct: 519 IK 520


>gi|154274011|ref|XP_001537857.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415465|gb|EDN10818.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 566

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 1369 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1428
             +  I  +  N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +L
Sbjct: 17   EISSISQIKVNDIVRGFVRRVADNGLFVTLGHNVIAYVRISDLSDSYLKEWQNEFQVNQL 76

Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V GRV+  +  S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I
Sbjct: 77   VRGRVILADAESNKLQMSLKESVLDPNYKTPI-TIKDLKRGQTVTGKVRNVEEFGAFIVI 135

Query: 1489 ENT 1491
            + T
Sbjct: 136  DGT 138



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 22/181 (12%)

Query: 403 SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
           S +KV DI  +  V RV D GL + L       +  AYV ISD+++  +++ + +++   
Sbjct: 22  SQIKVNDIV-RGFVRRVADNGLFVTL-----GHNVIAYVRISDLSDSYLKEWQNEFQVNQ 75

Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGMVVKGKVIAVDSFGA 514
            VR R++    L    +  L+ S  E ++        T  D+K G  V GKV  V+ FGA
Sbjct: 76  LVRGRVI----LADAESNKLQMSLKESVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGA 131

Query: 515 IVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570
            +   G   +  LC    M+E ++    K F+ G  +  +++ +    +RI++  K +  
Sbjct: 132 FIVIDGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYF 191

Query: 571 K 571
           K
Sbjct: 192 K 192



 Score = 44.7 bits (104), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
           S  S I  N +V G+V  + + G FV     +  +   S   D    +    + V Q VR
Sbjct: 19  SSISQIKVNDIVRGFVRRVADNGLFVTLGHNVIAYVRISDLSDSYLKEWQNEFQVNQLVR 78

Query: 814 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
             ++  ++E+ ++ +SLK+S         +  ++     I  L+                
Sbjct: 79  GRVILADAESNKLQMSLKESV--------LDPNYKTPITIKDLKR--------------- 115

Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 926
            G  + GKV    +FG  +  +  +++ G     ++A   VE        G +++A I+ 
Sbjct: 116 -GQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVK 174

Query: 927 VAKAERLVDLSLKTVFI 943
           +   +  + L LK  + 
Sbjct: 175 IDLNKERISLGLKASYF 191


>gi|398995415|ref|ZP_10698299.1| ribosomal protein S1 [Pseudomonas sp. GM21]
 gi|398130007|gb|EJM19359.1| ribosomal protein S1 [Pseudomonas sp. GM21]
          Length = 561

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGIVKEVDAKGAIITLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGIVKEVDAKGAIITL 472


>gi|169633382|ref|YP_001707118.1| 30S ribosomal protein S1 [Acinetobacter baumannii SDF]
 gi|169796132|ref|YP_001713925.1| 30S ribosomal protein S1 [Acinetobacter baumannii AYE]
 gi|213157134|ref|YP_002319179.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB0057]
 gi|215483586|ref|YP_002325807.1| ribosomal protein S1 [Acinetobacter baumannii AB307-0294]
 gi|239502184|ref|ZP_04661494.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB900]
 gi|260555182|ref|ZP_05827403.1| ribosomal protein S1 [Acinetobacter baumannii ATCC 19606 = CIP
           70.34]
 gi|301345931|ref|ZP_07226672.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB056]
 gi|301510602|ref|ZP_07235839.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB058]
 gi|301597403|ref|ZP_07242411.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB059]
 gi|332851786|ref|ZP_08433711.1| ribosomal protein S1 [Acinetobacter baumannii 6013150]
 gi|332865834|ref|ZP_08436618.1| ribosomal protein S1 [Acinetobacter baumannii 6013113]
 gi|332872776|ref|ZP_08440742.1| ribosomal protein S1 [Acinetobacter baumannii 6014059]
 gi|384132038|ref|YP_005514650.1| hypothetical protein [Acinetobacter baumannii 1656-2]
 gi|384143027|ref|YP_005525737.1| 30S ribosomal protein S1 [Acinetobacter baumannii MDR-ZJ06]
 gi|385237384|ref|YP_005798723.1| 30S ribosomal protein S1 [Acinetobacter baumannii TCDC-AB0715]
 gi|387124104|ref|YP_006289986.1| 30S ribosomal protein S1 [Acinetobacter baumannii MDR-TJ]
 gi|403673992|ref|ZP_10936269.1| 30S ribosomal protein S1 [Acinetobacter sp. NCTC 10304]
 gi|407932651|ref|YP_006848294.1| 30S ribosomal protein S1 [Acinetobacter baumannii TYTH-1]
 gi|416145598|ref|ZP_11600550.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB210]
 gi|417546481|ref|ZP_12197567.1| ribosomal protein S1 [Acinetobacter baumannii OIFC032]
 gi|417552444|ref|ZP_12203514.1| ribosomal protein S1 [Acinetobacter baumannii Naval-81]
 gi|417559918|ref|ZP_12210797.1| ribosomal protein S1 [Acinetobacter baumannii OIFC137]
 gi|417564376|ref|ZP_12215250.1| ribosomal protein S1 [Acinetobacter baumannii OIFC143]
 gi|417568190|ref|ZP_12219053.1| ribosomal protein S1 [Acinetobacter baumannii OIFC189]
 gi|417572841|ref|ZP_12223695.1| ribosomal protein S1 [Acinetobacter baumannii Canada BC-5]
 gi|417578652|ref|ZP_12229485.1| ribosomal protein S1 [Acinetobacter baumannii Naval-17]
 gi|417869863|ref|ZP_12514841.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH1]
 gi|417873322|ref|ZP_12518196.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH2]
 gi|417878539|ref|ZP_12523150.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH3]
 gi|417881477|ref|ZP_12525795.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH4]
 gi|421200345|ref|ZP_15657505.1| ribosomal protein S1 [Acinetobacter baumannii OIFC109]
 gi|421203276|ref|ZP_15660418.1| 30S ribosomal protein S1 [Acinetobacter baumannii AC12]
 gi|421454040|ref|ZP_15903391.1| ribosomal protein S1 [Acinetobacter baumannii IS-123]
 gi|421533985|ref|ZP_15980263.1| 30S ribosomal protein S1 [Acinetobacter baumannii AC30]
 gi|421621235|ref|ZP_16062158.1| ribosomal protein S1 [Acinetobacter baumannii OIFC074]
 gi|421624759|ref|ZP_16065623.1| ribosomal protein S1 [Acinetobacter baumannii OIFC098]
 gi|421629445|ref|ZP_16070177.1| ribosomal protein S1 [Acinetobacter baumannii OIFC180]
 gi|421631660|ref|ZP_16072324.1| ribosomal protein S1 [Acinetobacter baumannii Naval-13]
 gi|421645065|ref|ZP_16085539.1| ribosomal protein S1 [Acinetobacter baumannii IS-235]
 gi|421648679|ref|ZP_16089082.1| ribosomal protein S1 [Acinetobacter baumannii IS-251]
 gi|421652919|ref|ZP_16093267.1| ribosomal protein S1 [Acinetobacter baumannii OIFC0162]
 gi|421653674|ref|ZP_16094007.1| ribosomal protein S1 [Acinetobacter baumannii Naval-72]
 gi|421658263|ref|ZP_16098497.1| ribosomal protein S1 [Acinetobacter baumannii Naval-83]
 gi|421661919|ref|ZP_16102089.1| ribosomal protein S1 [Acinetobacter baumannii OIFC110]
 gi|421668793|ref|ZP_16108826.1| ribosomal protein S1 [Acinetobacter baumannii OIFC087]
 gi|421672416|ref|ZP_16112373.1| ribosomal protein S1 [Acinetobacter baumannii OIFC099]
 gi|421676447|ref|ZP_16116354.1| ribosomal protein S1 [Acinetobacter baumannii OIFC065]
 gi|421678750|ref|ZP_16118634.1| ribosomal protein S1 [Acinetobacter baumannii OIFC111]
 gi|421688196|ref|ZP_16127899.1| ribosomal protein S1 [Acinetobacter baumannii IS-143]
 gi|421691005|ref|ZP_16130669.1| ribosomal protein S1 [Acinetobacter baumannii IS-116]
 gi|421696916|ref|ZP_16136495.1| ribosomal protein S1 [Acinetobacter baumannii WC-692]
 gi|421699724|ref|ZP_16139248.1| ribosomal protein S1 [Acinetobacter baumannii IS-58]
 gi|421703465|ref|ZP_16142928.1| 30S ribosomal protein S1 [Acinetobacter baumannii ZWS1122]
 gi|421707188|ref|ZP_16146587.1| 30S ribosomal protein S1 [Acinetobacter baumannii ZWS1219]
 gi|421788621|ref|ZP_16224907.1| ribosomal protein S1 [Acinetobacter baumannii Naval-82]
 gi|421796378|ref|ZP_16232442.1| ribosomal protein S1 [Acinetobacter baumannii Naval-21]
 gi|421800329|ref|ZP_16236307.1| ribosomal protein S1 [Acinetobacter baumannii Canada BC1]
 gi|421802962|ref|ZP_16238906.1| ribosomal protein S1 [Acinetobacter baumannii WC-A-694]
 gi|421809378|ref|ZP_16245218.1| ribosomal protein S1 [Acinetobacter baumannii OIFC035]
 gi|424052532|ref|ZP_17790064.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab11111]
 gi|424060070|ref|ZP_17797561.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab33333]
 gi|424064012|ref|ZP_17801497.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab44444]
 gi|425748873|ref|ZP_18866855.1| ribosomal protein S1 [Acinetobacter baumannii WC-348]
 gi|425751744|ref|ZP_18869686.1| ribosomal protein S1 [Acinetobacter baumannii Naval-113]
 gi|445406828|ref|ZP_21432105.1| ribosomal protein S1 [Acinetobacter baumannii Naval-57]
 gi|445441165|ref|ZP_21441988.1| ribosomal protein S1 [Acinetobacter baumannii WC-A-92]
 gi|445458814|ref|ZP_21447354.1| ribosomal protein S1 [Acinetobacter baumannii OIFC047]
 gi|445469622|ref|ZP_21451279.1| ribosomal protein S1 [Acinetobacter baumannii OIFC338]
 gi|445476224|ref|ZP_21453673.1| ribosomal protein S1 [Acinetobacter baumannii Naval-78]
 gi|445488818|ref|ZP_21458427.1| ribosomal protein S1 [Acinetobacter baumannii AA-014]
 gi|169149059|emb|CAM86936.1| 30S ribosomal protein S1 [Acinetobacter baumannii AYE]
 gi|169152174|emb|CAP01077.1| 30S ribosomal protein S1 [Acinetobacter baumannii]
 gi|193077207|gb|ABO11999.2| 30S ribosomal protein S1 [Acinetobacter baumannii ATCC 17978]
 gi|213056294|gb|ACJ41196.1| ribosomal protein S1 [Acinetobacter baumannii AB0057]
 gi|213986936|gb|ACJ57235.1| ribosomal protein S1 [Acinetobacter baumannii AB307-0294]
 gi|260411724|gb|EEX05021.1| ribosomal protein S1 [Acinetobacter baumannii ATCC 19606 = CIP
           70.34]
 gi|322508258|gb|ADX03712.1| rpsA [Acinetobacter baumannii 1656-2]
 gi|323517884|gb|ADX92265.1| 30S ribosomal protein S1 [Acinetobacter baumannii TCDC-AB0715]
 gi|332729793|gb|EGJ61128.1| ribosomal protein S1 [Acinetobacter baumannii 6013150]
 gi|332735046|gb|EGJ66131.1| ribosomal protein S1 [Acinetobacter baumannii 6013113]
 gi|332739073|gb|EGJ69934.1| ribosomal protein S1 [Acinetobacter baumannii 6014059]
 gi|333366664|gb|EGK48678.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB210]
 gi|342229515|gb|EGT94381.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH1]
 gi|342231796|gb|EGT96597.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH2]
 gi|342232652|gb|EGT97425.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH3]
 gi|342238872|gb|EGU03295.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH4]
 gi|347593520|gb|AEP06241.1| 30S ribosomal protein S1 [Acinetobacter baumannii MDR-ZJ06]
 gi|385878596|gb|AFI95691.1| ribosomal protein S1 [Acinetobacter baumannii MDR-TJ]
 gi|395522500|gb|EJG10589.1| ribosomal protein S1 [Acinetobacter baumannii OIFC137]
 gi|395554485|gb|EJG20487.1| ribosomal protein S1 [Acinetobacter baumannii OIFC189]
 gi|395556132|gb|EJG22133.1| ribosomal protein S1 [Acinetobacter baumannii OIFC143]
 gi|395563946|gb|EJG25598.1| ribosomal protein S1 [Acinetobacter baumannii OIFC109]
 gi|395567790|gb|EJG28464.1| ribosomal protein S1 [Acinetobacter baumannii Naval-17]
 gi|398327353|gb|EJN43489.1| 30S ribosomal protein S1 [Acinetobacter baumannii AC12]
 gi|400208409|gb|EJO39379.1| ribosomal protein S1 [Acinetobacter baumannii Canada BC-5]
 gi|400213448|gb|EJO44403.1| ribosomal protein S1 [Acinetobacter baumannii IS-123]
 gi|400384369|gb|EJP43047.1| ribosomal protein S1 [Acinetobacter baumannii OIFC032]
 gi|400392703|gb|EJP59749.1| ribosomal protein S1 [Acinetobacter baumannii Naval-81]
 gi|404560649|gb|EKA65891.1| ribosomal protein S1 [Acinetobacter baumannii WC-692]
 gi|404561943|gb|EKA67168.1| ribosomal protein S1 [Acinetobacter baumannii IS-143]
 gi|404563156|gb|EKA68366.1| ribosomal protein S1 [Acinetobacter baumannii IS-116]
 gi|404571425|gb|EKA76485.1| ribosomal protein S1 [Acinetobacter baumannii IS-58]
 gi|404668022|gb|EKB35931.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab33333]
 gi|404671982|gb|EKB39824.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab11111]
 gi|404673901|gb|EKB41672.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab44444]
 gi|407192259|gb|EKE63442.1| 30S ribosomal protein S1 [Acinetobacter baumannii ZWS1122]
 gi|407192629|gb|EKE63806.1| 30S ribosomal protein S1 [Acinetobacter baumannii ZWS1219]
 gi|407901232|gb|AFU38063.1| 30S ribosomal protein S1 [Acinetobacter baumannii TYTH-1]
 gi|408504079|gb|EKK05831.1| ribosomal protein S1 [Acinetobacter baumannii IS-235]
 gi|408504336|gb|EKK06087.1| ribosomal protein S1 [Acinetobacter baumannii OIFC0162]
 gi|408513027|gb|EKK14665.1| ribosomal protein S1 [Acinetobacter baumannii Naval-72]
 gi|408515513|gb|EKK17101.1| ribosomal protein S1 [Acinetobacter baumannii IS-251]
 gi|408698534|gb|EKL44023.1| ribosomal protein S1 [Acinetobacter baumannii OIFC074]
 gi|408700453|gb|EKL45904.1| ribosomal protein S1 [Acinetobacter baumannii OIFC098]
 gi|408701431|gb|EKL46860.1| ribosomal protein S1 [Acinetobacter baumannii OIFC180]
 gi|408710061|gb|EKL55297.1| ribosomal protein S1 [Acinetobacter baumannii Naval-83]
 gi|408710721|gb|EKL55944.1| ribosomal protein S1 [Acinetobacter baumannii Naval-13]
 gi|408715411|gb|EKL60539.1| ribosomal protein S1 [Acinetobacter baumannii OIFC110]
 gi|409987972|gb|EKO44147.1| 30S ribosomal protein S1 [Acinetobacter baumannii AC30]
 gi|410378927|gb|EKP31536.1| ribosomal protein S1 [Acinetobacter baumannii OIFC087]
 gi|410379378|gb|EKP31982.1| ribosomal protein S1 [Acinetobacter baumannii OIFC099]
 gi|410379514|gb|EKP32117.1| ribosomal protein S1 [Acinetobacter baumannii OIFC065]
 gi|410392313|gb|EKP44675.1| ribosomal protein S1 [Acinetobacter baumannii OIFC111]
 gi|410399305|gb|EKP51500.1| ribosomal protein S1 [Acinetobacter baumannii Naval-21]
 gi|410401761|gb|EKP53897.1| ribosomal protein S1 [Acinetobacter baumannii Naval-82]
 gi|410407826|gb|EKP59802.1| ribosomal protein S1 [Acinetobacter baumannii Canada BC1]
 gi|410414260|gb|EKP66066.1| ribosomal protein S1 [Acinetobacter baumannii WC-A-694]
 gi|410415162|gb|EKP66954.1| ribosomal protein S1 [Acinetobacter baumannii OIFC035]
 gi|425489854|gb|EKU56155.1| ribosomal protein S1 [Acinetobacter baumannii WC-348]
 gi|425499751|gb|EKU65782.1| ribosomal protein S1 [Acinetobacter baumannii Naval-113]
 gi|444765323|gb|ELW89622.1| ribosomal protein S1 [Acinetobacter baumannii WC-A-92]
 gi|444767654|gb|ELW91901.1| ribosomal protein S1 [Acinetobacter baumannii AA-014]
 gi|444774284|gb|ELW98372.1| ribosomal protein S1 [Acinetobacter baumannii OIFC338]
 gi|444775223|gb|ELW99293.1| ribosomal protein S1 [Acinetobacter baumannii OIFC047]
 gi|444777895|gb|ELX01915.1| ribosomal protein S1 [Acinetobacter baumannii Naval-78]
 gi|444781475|gb|ELX05394.1| ribosomal protein S1 [Acinetobacter baumannii Naval-57]
 gi|452950857|gb|EME56308.1| 30S ribosomal protein S1 [Acinetobacter baumannii MSP4-16]
          Length = 557

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKS 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G + G     HL+D    E         K G   
Sbjct: 361 HEKGEKVSGTIKSITDFGIFI-----GLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDARGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 47.0 bits (110), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E    +H   + G  V G + ++  FG  +   GG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKSH---EKGEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 ARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 81/413 (19%), Positives = 167/413 (40%), Gaps = 72/413 (17%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    + S             +  GS+++ +V    D+G      E   V 
Sbjct: 262  ------LGEDPWLAIMSR------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE-ANSN 952
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E A S+
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSH 361

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNTQ-K 1009
             + +K     ++  D G+   +N  ++                  G   +SD  +N Q +
Sbjct: 362  EKGEKVSGTIKSITDFGIFIGLNGGID------------------GLVHLSDISWNEQGE 403

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQA 1069
               +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+ 
Sbjct: 404  EAIRRYKKGDTVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANER-----GALVKG 456

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +T +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 457  TVTAVDARGATVKLADEVEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506



 Score = 40.4 bits (93), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 142/345 (41%), Gaps = 67/345 (19%)

Query: 1155 LFEECDVSI----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
            LFEE ++++    G  + G V  +D++W  +T+   LK++  I+D A   +E +E +   
Sbjct: 8    LFEESELNLNVEKGAVIQGVVVNIDSDW--VTVDTGLKSE-GIVDRAEFLNEQRELE--V 62

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN-------DNMQTFIHEGDIV 1263
             +G  V               +V+    +G+    +             ++    +G+IV
Sbjct: 63   QVGDTVD--------------VVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIV 108

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G IS  + G  G  V IGP     V      ++  + P+           + + EG+ +
Sbjct: 109  TGVISGKVKG--GFTVDIGP-----VRAFLPGSLVDTRPIRD---------TTHLEGKEL 152

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            + KV+++        +V +S R+ ++  SS +   L             +  L     V 
Sbjct: 153  EFKVIKLDAKRN---NVVVSRRAVMEAESSADREAL-------------LAQLEEGQTVT 196

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G +KN+T  G F+ L   +D  + +++++   ++ P +   +G+ V  +VL  +    RV
Sbjct: 197  GTIKNLTDYGAFVDLG-GIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             + LK    +      +  +S    G IV  ++  +  YG F  I
Sbjct: 256  SLGLK----QLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI 296


>gi|260550112|ref|ZP_05824326.1| ribosomal protein S1 [Acinetobacter sp. RUH2624]
 gi|424055757|ref|ZP_17793280.1| 30S ribosomal protein S1 [Acinetobacter nosocomialis Ab22222]
 gi|425742714|ref|ZP_18860813.1| ribosomal protein S1 [Acinetobacter baumannii WC-487]
 gi|445432607|ref|ZP_21439352.1| ribosomal protein S1 [Acinetobacter baumannii OIFC021]
 gi|260406867|gb|EEX00346.1| ribosomal protein S1 [Acinetobacter sp. RUH2624]
 gi|407438248|gb|EKF44792.1| 30S ribosomal protein S1 [Acinetobacter nosocomialis Ab22222]
 gi|425485966|gb|EKU52345.1| ribosomal protein S1 [Acinetobacter baumannii WC-487]
 gi|444758903|gb|ELW83393.1| ribosomal protein S1 [Acinetobacter baumannii OIFC021]
          Length = 557

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKS 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G + G     HL+D    E         K G   
Sbjct: 361 HEKGEKVSGTIKSITDFGIFI-----GLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDARGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E    +H   + G  V G + ++  FG  +   GG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKSH---EKGEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 ARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 81/413 (19%), Positives = 167/413 (40%), Gaps = 72/413 (17%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    + S             +  GS+++ +V    D+G      E   V 
Sbjct: 262  ------LGEDPWLAIMSR------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE-ANSN 952
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E A S+
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSH 361

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNTQ-K 1009
             + +K     ++  D G+   +N  ++                  G   +SD  +N Q +
Sbjct: 362  EKGEKVSGTIKSITDFGIFIGLNGGID------------------GLVHLSDISWNEQGE 403

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQA 1069
               +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+ 
Sbjct: 404  EAIRRYKKGDTVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANER-----GALVKG 456

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +T +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 457  TVTAVDARGATVKLADEVEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506



 Score = 40.4 bits (93), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 142/345 (41%), Gaps = 67/345 (19%)

Query: 1155 LFEECDVSI----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
            LFEE ++++    G  + G V  +D++W  +T+   LK++  I+D A   +E +E +   
Sbjct: 8    LFEESELNLNVEKGAVIQGVVVNIDSDW--VTVDTGLKSE-GIVDRAEFLNEQRELE--V 62

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN-------DNMQTFIHEGDIV 1263
             +G  V               +V+    +G+    +             ++    +G+IV
Sbjct: 63   QVGDTVD--------------VVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIV 108

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G IS  + G  G  V IGP     V      ++  + P+           + + EG+ +
Sbjct: 109  TGVISGKVKG--GFTVDIGP-----VRAFLPGSLVDTRPIRD---------TTHLEGKEL 152

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            + KV+++        +V +S R+ ++  SS +   L             +  L     V 
Sbjct: 153  EFKVIKLDAKRN---NVVVSRRAVMEAESSADREAL-------------LAQLEEGQTVT 196

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G +KN+T  G F+ L   +D  + +++++   ++ P +   +G+ V  +VL  +    RV
Sbjct: 197  GTIKNLTDYGAFVDLG-GIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             + LK    +      +  +S    G IV  ++  +  YG F  I
Sbjct: 256  SLGLK----QLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI 296


>gi|421793360|ref|ZP_16229487.1| ribosomal protein S1 [Acinetobacter baumannii Naval-2]
 gi|410397167|gb|EKP49420.1| ribosomal protein S1 [Acinetobacter baumannii Naval-2]
          Length = 557

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKS 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G + G     HL+D    E         K G   
Sbjct: 361 HEKGEKVSGTIKSITDFGIFI-----GLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDARGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 47.0 bits (110), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E    +H   + G  V G + ++  FG  +   GG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKSH---EKGEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 ARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 82/413 (19%), Positives = 167/413 (40%), Gaps = 72/413 (17%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    S  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADRESLLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    + S             +  GS+++ +V    D+G      E   V 
Sbjct: 262  ------LGEDPWLAIMSR------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE-ANSN 952
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E A S+
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSH 361

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNTQ-K 1009
             + +K     ++  D G+   +N  ++                  G   +SD  +N Q +
Sbjct: 362  EKGEKVSGTIKSITDFGIFIGLNGGID------------------GLVHLSDISWNEQGE 403

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQA 1069
               +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+ 
Sbjct: 404  EAIRRYKKGDTVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANER-----GALVKG 456

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +T +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 457  TVTAVDARGATVKLADEVEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506



 Score = 40.8 bits (94), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 142/345 (41%), Gaps = 67/345 (19%)

Query: 1155 LFEECDVSI----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
            LFEE ++++    G  + G V  +D++W  +T+   LK++  I+D A   +E +E +   
Sbjct: 8    LFEESELNLNVEKGAVIQGVVVNIDSDW--VTVDTGLKSE-GIVDRAEFLNEQRELE--V 62

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN-------DNMQTFIHEGDIV 1263
             +G  V               +V+    +G+    +             ++    +G+IV
Sbjct: 63   QVGDTVD--------------VVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIV 108

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1323
             G IS  + G  G  V IGP     V      ++  + P+           + + EG+ +
Sbjct: 109  TGVISGKVKG--GFTVDIGP-----VRAFLPGSLVDTRPIRD---------TTHLEGKEL 152

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            + KV+++        +V +S R+ ++  SS +   L             +  L     V 
Sbjct: 153  EFKVIKLDAKRN---NVVVSRRAVMEAESSADRESL-------------LAQLEEGQTVT 196

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G +KN+T  G F+ L   +D  + +++++   ++ P +   +G+ V  +VL  +    RV
Sbjct: 197  GTIKNLTDYGAFVDLG-GIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             + LK    +      +  +S    G IV  ++  +  YG F  I
Sbjct: 256  SLGLK----QLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI 296


>gi|334131900|ref|ZP_08505662.1| 30S ribosomal subunit protein S1 [Methyloversatilis universalis
           FAM5]
 gi|333443373|gb|EGK71338.1| 30S ribosomal subunit protein S1 [Methyloversatilis universalis
           FAM5]
          Length = 558

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 150/348 (43%), Gaps = 28/348 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL- 554
           +K G VVKG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +VL 
Sbjct: 188 LKEGTVVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLAVGDEVEAKVLK 246

Query: 555 -GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      + I   Y + T RL   G +T +  +G FV    G++G  
Sbjct: 247 FDAEKNRVSLGLKQLGEDPWVGISRRYPQGT-RLF--GKVTNLTDYGAFVEIEQGIEGLV 303

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KLG 670
             SE+   +    P+ +  +G  V+  I+      RRI+L          ED  +  K G
Sbjct: 304 HVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMPNPWEDFSMNHKKG 363

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-LV 729
             V G +  +T   V  ++   G   G +    L+  L     +++  K G E + + L 
Sbjct: 364 DKVRGQIKSITDFGV--FIGLTGAIDGLVHLSDLSWSLAGEEAVRN-YKKGDEVEAVVLS 420

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           +D E   + L  K        QL  D      A+H   NSVV G V  +   G  +    
Sbjct: 421 IDVERERISLGVK--------QLDGDPFTNFIATH-DKNSVVRGTVKTVDAKGAVIALNE 471

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G+   S+A   +  DL+    VG  V + I++++ +T  ITLS++
Sbjct: 472 DVEGYLRASEASRDRVEDLTTILNVGDEVEAMIVNLDRKTRSITLSVR 519



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 156/377 (41%), Gaps = 49/377 (12%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI------VKPGKKFK 544
            T  +++ G V+  +V+ VD    +V    G+K+   +  + EF        V PG    
Sbjct: 12  LTRQEMRAGEVITAEVMRVDQNFVVVN--AGLKSESYIS-IDEFRTDRGELTVAPGDYVS 68

Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEAT-DRLITHGWITKIEKHGCFV 603
           V  E++    G    R++    K     ++A  +   +A  D  I  G ++   K G  V
Sbjct: 69  VAIEMLED--GYGETRLSRDKAK-----RIAAWNELEKALGDGSIVKGLVSGKVKGGLTV 121

Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ----VVKC-RIMSSIPASRRINLSFMMKP 658
              NG++ F P S + L P  + ++ Y   +    V+K  R  +++  SRR  L      
Sbjct: 122 -MTNGIRAFLPGSLVDLRP-VKDTTPYEGKEFEFKVIKLDRKRNNVVVSRRAVLELTAGE 179

Query: 659 TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 717
            R    + +K G++V G+V  +T     V +   G   G +    LA   + H +    V
Sbjct: 180 EREKLLETLKEGTVVKGIVKNITDYGAFVDL---GGIDGLLHITDLAWRRVRHPS---EV 233

Query: 718 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCN 771
           +  G E + ++L  D E + + L  K        QL  D     S  +P    + G V N
Sbjct: 234 LAVGDEVEAKVLKFDAEKNRVSLGLK--------QLGEDPWVGISRRYPQGTRLFGKVTN 285

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLS 829
           + + G FV     + G    S+ +D    ++  +K   +G  V   IL+++ +  RI+L 
Sbjct: 286 LTDYGAFVEIEQGIEGLVHVSE-MDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLG 344

Query: 830 LKQSCCSSTDASFMQEH 846
           +KQ C  +    F   H
Sbjct: 345 MKQ-CMPNPWEDFSMNH 360



 Score = 40.8 bits (94), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 133/319 (41%), Gaps = 45/319 (14%)

Query: 372 KVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDRG 422
           +V A++L  D     V L L     +P++  +R  P       KV ++ D    V +++G
Sbjct: 239 EVEAKVLKFDAEKNRVSLGLKQLGEDPWVGISRRYPQGTRLFGKVTNLTDYGAFVEIEQG 298

Query: 423 L-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEGL 476
           + GL+    +D  +  +     V + D  E  + ++++        R RI LG +     
Sbjct: 299 IEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDED-------RRRISLGMKQC--- 348

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
                  + +E     H   K G  V+G++ ++  FG  +   G +  L    H+S+   
Sbjct: 349 -----MPNPWEDFSMNH---KKGDKVRGQIKSITDFGVFIGLTGAIDGLV---HLSDLSW 397

Query: 537 VKPG----KKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
              G    + +K G E+   VL   V+ +RI++  K+         ++++ + +   +  
Sbjct: 398 SLAGEEAVRNYKKGDEVEAVVLSIDVERERISLGVKQLDGDPFTNFIATHDKNS---VVR 454

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G +  ++  G  +     V+G+   SE   D   + +++ +VG  V+  I++    +R I
Sbjct: 455 GTVKTVDAKGAVIALNEDVEGYLRASEASRDRVEDLTTILNVGDEVEAMIVNLDRKTRSI 514

Query: 651 NLSFMMKPTRVSEDDLVKL 669
            LS   K      D + K+
Sbjct: 515 TLSVRAKDQAEQNDAIQKI 533


>gi|398938569|ref|ZP_10667923.1| ribosomal protein S1 [Pseudomonas sp. GM41(2012)]
 gi|407365592|ref|ZP_11112124.1| 30S ribosomal protein S1 [Pseudomonas mandelii JR-1]
 gi|398165610|gb|EJM53725.1| ribosomal protein S1 [Pseudomonas sp. GM41(2012)]
          Length = 563

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGIVKEVDAKGAIITLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGIVKEVDAKGAIITL 472


>gi|320546631|ref|ZP_08040943.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
 gi|320448686|gb|EFW89417.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
          Length = 398

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 159/365 (43%), Gaps = 39/365 (10%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +V+ VD+  A V   G GV+ +  L  ++        + VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDNDQANVVIEGTGVEGVLTLRELTNDRDADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G   +V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  AGDTVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  G++GF P S +  D     ++   VGQ  + +I   +PA  R    F++ 
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQEFEAKIKEVVPAENR----FILS 171

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--- 714
              V E+   K  +    V   +   ++V   +A+  S G        D L H T +   
Sbjct: 172 RREVVEE---KAAAARKEVFSKIEEGSIVKGKVARLTSFGAFVDLGGVDGLVHVTELSHE 228

Query: 715 -----KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
                KSV+  G E + ++L +D E+  + LS K +        P D     +    VV 
Sbjct: 229 RNVSPKSVVSVGEEIEVKVLSIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVVE 283

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V  + + G FV  L  + G    S+    +  +      VGQ V+  +LDVN++  R+
Sbjct: 284 GKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVGNPKDVLSVGQEVKVKVLDVNADAERV 343

Query: 827 TLSLK 831
           +LS+K
Sbjct: 344 SLSIK 348



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 38/225 (16%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S I   S+V G V  +   G FV  LG + G    ++    +         VG+ +   +
Sbjct: 189 SKIEEGSIVKGKVARLTSFGAFVD-LGGVDGLVHVTELSHERNVSPKSVVSVGEEIEVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LSIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITH--HQLAGA---TVESGSVIQAAILDV-AKA 930
           V+EGKV    DFG  V      D    I+   H+  G     +  G  ++  +LDV A A
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVGNPKDVLSVGQEVKVKVLDVNADA 340

Query: 931 ERLVDLSLKTVFIDRFREANSN--RQAQKKKRKREASKDLGVHQT 973
           ER V LS+K    +R  +A +   RQ++ ++ KREA +D  + +T
Sbjct: 341 ER-VSLSIKA-LEERPAQAENEEKRQSRPRRPKREAKRDYELPET 383



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 34/199 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I EG IV G+++++ S   G  V +G  + G VH TEL +           E    P S 
Sbjct: 191  IEEGSIVKGKVARLTSF--GAFVDLG-GVDGLVHVTELSH-----------ERNVSPKSV 236

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               G+ ++ KVL I         V LSL+++                 TPG      + L
Sbjct: 237  VSVGEEIEVKVLSIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKL 276

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            +   +V+G VK +T  G F+ +   +D  V +S +S   V +P+    +G+ V  +VL V
Sbjct: 277  AAGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVGNPKDVLSVGQEVKVKVLDV 336

Query: 1437 EPLSKRVEVTLKTSDSRTA 1455
               ++RV +++K  + R A
Sbjct: 337  NADAERVSLSIKALEERPA 355



 Score = 47.0 bits (110), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 8/117 (6%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            KIE+ S   IV+G V  +TS G F+ L   +D  V ++ LS     SP+    +G+ +  
Sbjct: 190  KIEEGS---IVKGKVARLTSFGAFVDLG-GVDGLVHVTELSHERNVSPKSVVSVGEEIEV 245

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +VLS++  + RV ++LK +        E      L  GD+V G++KR+  +G F+ +
Sbjct: 246  KVLSIDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVVEGKVKRLTDFGAFVEV 298


>gi|395651191|ref|ZP_10439041.1| 30S ribosomal protein S1 [Pseudomonas extremaustralis 14-3 substr.
           14-3b]
          Length = 564

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGTVKEVDAKGAIITLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGTVKEVDAKGAIITL 472



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGTVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 40.4 bits (93), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 145/382 (37%), Gaps = 64/382 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPESTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V  +     G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEYVQEND---KG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   +       K G E+  +++ V  K
Sbjct: 454 AIVKGTVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAILS 578
           S+ I ++ K K  ++ K AI S
Sbjct: 514 SRVIQLSIKSKDEIEEKEAIQS 535


>gi|375108456|ref|ZP_09754713.1| 30S ribosomal protein S1 [Alishewanella jeotgali KCTC 22429]
 gi|374571558|gb|EHR42684.1| 30S ribosomal protein S1 [Alishewanella jeotgali KCTC 22429]
          Length = 559

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 147/350 (42%), Gaps = 30/350 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLEEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIPVKVL 246

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
                 +R+++  K+       AI S Y E        G +T +  +GCFV    GV+G 
Sbjct: 247 KFDRDKQRVSLGLKQMGEDPWAAIASRYPEGAK---ISGRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L          E+       
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL 727
           G  VSG +  +T   + +     G   G     HL+D   ++T   +V   K G E   +
Sbjct: 364 GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAV 418

Query: 728 -LVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
            L +D E   + L  K        QL  D    ++  N   ++V G V  +   G  V  
Sbjct: 419 VLQVDPERERISLGIK--------QLDEDPFNDYLADNKKGAIVKGEVSAVDAKGATVML 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G + G+   S     +  D +    VG+++ + ++ V+ +   I+LS+K
Sbjct: 471 EGGVEGYVRVSDISRDRVEDATTALKVGEAIEARLMGVDRKNRVISLSIK 520



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 138/351 (39%), Gaps = 33/351 (9%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE ++EGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLEEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEIPV 243

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            V   DR ++ V L        K + +D           G  +S RV ++ + G  +   
Sbjct: 244 KVLKFDRDKQRVSLGL------KQMGEDPWAAIASRYPEGAKISGRVTNLTDYGCFVEIE 297

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLH 397
               G V +  +  T    +     N    V   +L +D   R + L L     NP+   
Sbjct: 298 EGVEGLVHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKANPWEEF 357

Query: 398 ----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               N+      K+  I D    + +D G+  L+ +          ++ +   E+ VR+ 
Sbjct: 358 AKGFNKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNSTGEDAVREF 409

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
            KK  E   V +++   R    L    L    F   +   +D K G +VKG+V AVD+ G
Sbjct: 410 -KKGDEVHAVVLQVDPERERISLGIKQLDEDPFNDYL---ADNKKGAIVKGEVSAVDAKG 465

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           A V   GGV+    +  +S   +       KVG  +  R++GV  K   ++
Sbjct: 466 ATVMLEGGVEGYVRVSDISRDRVEDATTALKVGEAIEARLMGVDRKNRVIS 516



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 171/429 (39%), Gaps = 71/429 (16%)

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVV 765
            HLEH  +   VIK          LD + +N+++S +  + + S+Q+      ++     V
Sbjct: 146  HLEHKELEFKVIK----------LDQKRNNVVVSRRAVIESESSQERDQLLENLEEGMEV 195

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
             G V N+ + G FV  LG + G    +     +    S+   VG  +   +L  + +  R
Sbjct: 196  KGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEIPVKVLKFDRDKQR 254

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            ++L LKQ               + E+  A + S    G++            I G+V   
Sbjct: 255  VSLGLKQ---------------MGEDPWAAIASRYPEGAK------------ISGRVTNL 287

Query: 886  NDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             D+G  V  EE      H     +   +      V  G  ++  +L++ +  R + L LK
Sbjct: 288  TDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLK 347

Query: 940  TVFIDRFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 998
                + + E A    +  +   K ++  D G+   ++  ++      + LS   +N S G
Sbjct: 348  QCKANPWEEFAKGFNKGDRVSGKIKSITDFGIFIGLDGGID----GLVHLSDISWN-STG 402

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK 1058
              +V          ++F  G  V A V+ +       R+ L +K + E   +      KK
Sbjct: 403  EDAV----------REFKKGDEVHAVVLQVDPERE--RISLGIKQLDEDPFNDYLADNKK 450

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
                 G++V+ E++ +      +    G  G + +++++ D+   VE+  +  K+G+ + 
Sbjct: 451  -----GAIVKGEVSAVDAKGATVMLEGGVEGYVRVSDISRDR---VEDATTALKVGEAIE 502

Query: 1119 ARIIAKSNK 1127
            AR++    K
Sbjct: 503  ARLMGVDRK 511



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 153/370 (41%), Gaps = 59/370 (15%)

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN--WKNDYNQHKKVN 374
           D L+  +     V+ I++N      LT +   VD+  +      T+  WK   +  + VN
Sbjct: 183 DQLLENLEEGMEVKGIVKN------LTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVN 236

Query: 375 A------RILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVRV 419
                  ++L  D   + V L L     +P+  + +R P       +V ++ D    V +
Sbjct: 237 VGDEIPVKVLKFDRDKQRVSLGLKQMGEDPWAAIASRYPEGAKISGRVTNLTDYGCFVEI 296

Query: 420 DRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHL 473
           + G+ GL+    +D  +  +     V + D  E  V +++++       R RI LG +  
Sbjct: 297 EEGVEGLVHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEE-------RRRISLGLKQC 349

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
                   KA+ +E           G  V GK+ ++  FG  +   GG+  L    H+S+
Sbjct: 350 --------KANPWEEFA---KGFNKGDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSD 395

Query: 534 FEIVKPG----KKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
                 G    ++FK G E+   VL V  + +RI++  K+     +       A+     
Sbjct: 396 ISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQL---DEDPFNDYLADNKKGA 452

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G ++ ++  G  V    GV+G+   S++  D   + ++   VG+ ++ R+M     +
Sbjct: 453 IVKGEVSAVDAKGATVMLEGGVEGYVRVSDISRDRVEDATTALKVGEAIEARLMGVDRKN 512

Query: 648 RRINLSFMMK 657
           R I+LS   K
Sbjct: 513 RVISLSIKAK 522



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 101/483 (20%), Positives = 189/483 (39%), Gaps = 69/483 (14%)

Query: 489 LVFTHS----DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 544
           L+F  S    + +PG +VKG V+AV     +V    G+K+   +P + +F+ +    +  
Sbjct: 7   LLFEESLKAIETRPGAIVKGTVVAV--LKDVVMVDAGLKSEAAIP-VEQFKSLSGEIEVN 63

Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
           VG  +   +  ++         +   K   A +       D+    G IT   K G F  
Sbjct: 64  VGDIIDVALDAIEDGFGETLLSREKAKRHEAWVRLEKACEDKETVIGVITGKVK-GGFTV 122

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTR 660
             +G++ F P S + + P  + + + H     +V+K  +  +++  SRR  +       R
Sbjct: 123 EVDGIRAFLPGSLVDVRPVRDTAHLEHKELEFKVIKLDQKRNNVVVSRRAVIESESSQER 182

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
               + ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++ 
Sbjct: 183 DQLLENLEEGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVN 236

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNII 773
            G E   ++L  D +   + L  K        Q+  D     AS     + + G V N+ 
Sbjct: 237 VGDEIPVKVLKFDRDKQRVSLGLK--------QMGEDPWAAIASRYPEGAKISGRVTNLT 288

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + GCFV     + G    S+ +D    ++  SK   +G +V   +L+++ E  RI+L LK
Sbjct: 289 DYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLK 347

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
           Q C ++    F +                          GF  G  + GK+    DFG+ 
Sbjct: 348 Q-CKANPWEEFAK--------------------------GFNKGDRVSGKIKSITDFGIF 380

Query: 892 VSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
           +  +       H     + +  + A    + G  + A +L V      + L +K +  D 
Sbjct: 381 IGLDGGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQLDEDP 440

Query: 946 FRE 948
           F +
Sbjct: 441 FND 443



 Score = 44.3 bits (103), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 137/331 (41%), Gaps = 56/331 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A++    PSE+       ++G  +   
Sbjct: 192  GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEIPVK 244

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  +++K+ + L L+   +   D    I+     +   EG  + GR++ +     G  V
Sbjct: 245  VLKFDRDKQRVSLGLKQMGE---DPWAAIA-----SRYPEGAKISGRVTNLTDY--GCFV 294

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VLEI    R    
Sbjct: 295  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNLGDAVEVMVLEIDEERR---- 340

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL G+    ++        P +   K    +    V G +K++T  G FI L 
Sbjct: 341  -----RISL-GLKQCKAN--------PWEEFAK--GFNKGDRVSGKIKSITDFGIFIGLD 384

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +   E   +EF  G  V   VL V+P  +R+ + +K  D    +  
Sbjct: 385  GGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQLDEDPFN-- 442

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              + L++   G IV G++  V++ G  + +E
Sbjct: 443  --DYLADNKKGAIVKGEVSAVDAKGATVMLE 471


>gi|77460293|ref|YP_349800.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
 gi|77384296|gb|ABA75809.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
          Length = 561

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 146/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEGT-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVSVNDKGAIVKGTVKEVDAKGAIIVLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++ +I+LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNALKEGQEVEAKIISVDRKSRQISLSIK 522



 Score = 44.7 bits (104), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 151/393 (38%), Gaps = 68/393 (17%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P G  V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPEGTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V  +     G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEYVSVND---KG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   +       K G E+  +++ V  K
Sbjct: 454 AIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNALKEGQEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAILSSYA----EATD 585
           S++I+++ K K   + K AI S  A    EA D
Sbjct: 514 SRQISLSIKSKDDAEEKEAIQSLKAAPEGEAAD 546



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 42/71 (59%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV+G VK V +KG  I+L+  ++A +  S +S   VE        G+ V  +++SV+  S
Sbjct: 455  IVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNALKEGQEVEAKIISVDRKS 514

Query: 1441 KRVEVTLKTSD 1451
            +++ +++K+ D
Sbjct: 515  RQISLSIKSKD 525



 Score = 40.0 bits (92), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+     +S    G IV G +K V++ G  I +
Sbjct: 429  ERISLGIKQLESDPFSEY----VSVNDKGAIVKGTVKEVDAKGAIIVL 472


>gi|398879374|ref|ZP_10634469.1| ribosomal protein S1 [Pseudomonas sp. GM67]
 gi|398885421|ref|ZP_10640333.1| ribosomal protein S1 [Pseudomonas sp. GM60]
 gi|398192549|gb|EJM79698.1| ribosomal protein S1 [Pseudomonas sp. GM60]
 gi|398196537|gb|EJM83538.1| ribosomal protein S1 [Pseudomonas sp. GM67]
          Length = 562

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGIVKEVDAKGAIITLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGIVKEVDAKGAIITL 472


>gi|336054211|ref|YP_004562498.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
 gi|333957588|gb|AEG40396.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
          Length = 403

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA V   GGV  L  +  +S   + KP    K G E+  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFVDV-GGVDGLVHISEISYKHVDKPSDVLKAGQEVKVKVIGIDN 256

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 614
            R    H+ +L   ++   S + +AT  L    +  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISLSIKQIE-PSPFEQATANLNEGDVFEGEVKSLTNFGAFVEVADGIQGLVH 311

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
            SE+      +PS +  VGQ VK ++++  P+ +RI+LS        S  D
Sbjct: 312 VSEISNKHVDKPSDVLKVGQEVKVKVLNIDPSDKRISLSIKAADPNASSSD 362



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 34/197 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD++ G++S++ +   G  V +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFVDVG-GVDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++                    P    +   +L+  
Sbjct: 244  GQEVKVKVIGIDND---RHRISLSIKQI-----------------EPSPFEQATANLNEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQEVKVKVLNIDPS 343

Query: 1440 SKRVEVTLKTSDSRTAS 1456
             KR+ +++K +D   +S
Sbjct: 344  DKRISLSIKAADPNASS 360



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 132/320 (41%), Gaps = 36/320 (11%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDYEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     V V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFVDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G E   +++ +DN+   + LS K    +  +Q     ++++ 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQEVKVKVIGIDNDRHRISLSIKQIEPSPFEQA---TANLNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQEVKVKVLNIDP 342

Query: 822 ETGRITLSLKQS--CCSSTD 839
              RI+LS+K +    SS+D
Sbjct: 343 SDKRISLSIKAADPNASSSD 362



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +++G V  +T+ G F+ +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAGQEVKVKVIGIDNDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K  +     Q+     +NL+ GD+  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQIEPSPFEQA----TANLNEGDVFEGEVKSLTNFGAFVEV 302


>gi|332298351|ref|YP_004440273.1| 30S ribosomal protein S1 [Treponema brennaborense DSM 12168]
 gi|332181454|gb|AEE17142.1| ribosomal protein S1 [Treponema brennaborense DSM 12168]
          Length = 572

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 140/355 (39%), Gaps = 43/355 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGV 556
           G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V  L  
Sbjct: 204 GDTVKGAVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIELKVIRLDP 262

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             KRI ++ K       L     Y    D  +  G +TK+   G F+    G++G A  S
Sbjct: 263 AEKRINLSLKHFSEDPWLHFEDKY-HVND--VVKGRVTKLTDFGAFIELEEGIEGLAHIS 319

Query: 617 ELGLDPGCEPSS-MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG 675
           E         +S M  +G  V+C +           L + ++  RVS    + L  + + 
Sbjct: 320 EFSWVKKINKASDMVKIGDEVECMV-----------LGYDIQAGRVS----LGLKQVTNN 364

Query: 676 VVDVVTPNAVVVYVIAKGYSKGT-----IPTEHLADHLEHA---TVMKSVIKPGYEFD-- 725
             D V     V   + +   K T     I  E   D   HA   +  K V  PG E    
Sbjct: 365 PWDAVAEKYPVGTRLTRKVVKVTNVGAFIELEEGIDGFLHADDLSWTKKVKHPGSELSVG 424

Query: 726 ---QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
              + +V+  D ES  + L  K    +  QQ         P S + G + +I + G FVR
Sbjct: 425 QEIETVVIESDPESHRIRLGVKQLSDDPWQQF---CLAYKPGSTLEGEIVSITDFGLFVR 481

Query: 781 FLGRLTGFAPRSKAVDGQRA---DLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             G + G   ++   D +     +  K Y VG  V   ++DVN E  ++  S+K+
Sbjct: 482 APGGIEGLVNKANLSDNRDEPYEEAVKKYAVGDKVNVYVVDVNPEKQKVAFSVKE 536



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
             E +S    V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +
Sbjct: 198  FETISIGDTVKGAVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGQEIELK 256

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            V+ ++P  KR+ ++LK      +    ++     HV D+V G++ ++  +G FI +E
Sbjct: 257  VIRLDPAEKRINLSLK----HFSEDPWLHFEDKYHVNDVVKGRVTKLTDFGAFIELE 309



 Score = 47.4 bits (111), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 131/338 (38%), Gaps = 50/338 (14%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV-GQVVKCRIMS 642
           TD+    G I K+ K G  V   +G+  F P S+       +   +  V  Q    R+ S
Sbjct: 113 TDKTPIEGTIEKVVKGGFDVNLGSGIHAFLPISQSDSQKVEKSEKLLGVKSQFYIERLYS 172

Query: 643 ----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
               ++  +RR  L   M+  R    + + +G  V G V   T     + +   G   G 
Sbjct: 173 DNKANVVVNRRKYLEESMETNREKFFETISIGDTVKGAVKSFTSFGAFIDL---GGFDGL 229

Query: 699 IPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
           +   H+ D    H T  K  +K G E + +++ LD     + LS K+    S        
Sbjct: 230 L---HINDMSWGHVTRPKDFVKKGQEIELKVIRLDPAEKRINLSLKHF---SEDPWLHFE 283

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSN 815
              H N VV G V  + + G F+     + G A  S+    ++ +  S    +G  V   
Sbjct: 284 DKYHVNDVVKGRVTKLTDFGAFIELEEGIEGLAHISEFSWVKKINKASDMVKIGDEVECM 343

Query: 816 ILDVNSETGRITLSLKQSCCSSTDA----------------------SFMQ-----EHFL 848
           +L  + + GR++L LKQ   +  DA                      +F++     + FL
Sbjct: 344 VLGYDIQAGRVSLGLKQVTNNPWDAVAEKYPVGTRLTRKVVKVTNVGAFIELEEGIDGFL 403

Query: 849 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             + ++  +  KH GSEL       +G  IE  V ES+
Sbjct: 404 HADDLSWTKKVKHPGSELS------VGQEIETVVIESD 435


>gi|74316974|ref|YP_314714.1| 30S ribosomal protein S1 [Thiobacillus denitrificans ATCC 25259]
 gi|74056469|gb|AAZ96909.1| ribosomal protein S1 [Thiobacillus denitrificans ATCC 25259]
          Length = 573

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 149/355 (41%), Gaps = 20/355 (5%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL- 554
           +K G +VKG V  +  +GA V   GG+  L  +  M+   +  P +   VG EL  ++L 
Sbjct: 200 LKEGSIVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVKHPTEVVHVGQELEAKILR 258

Query: 555 -GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      + I   Y + T R+   G +  +  +G FV    G++G  
Sbjct: 259 YDTEKNRVSLGLKQLGDDPWVGIARRYPQGT-RMF--GKVANLTDYGAFVEIEEGIEGLV 315

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KLG 670
             SE+   +    PS +  +G  V+  ++      RRI+L      +   ED  +  K G
Sbjct: 316 HVSEMDWTNKNVSPSKIVQLGDEVEVMVLDIDEDKRRISLGMKQCKSNPWEDFAMNHKKG 375

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLL 728
             VSG +  +T   V +     G   G     HL+D        ++V   + G + + ++
Sbjct: 376 DKVSGAIKSITDFGVFI-----GLPGGIDGLVHLSDLSWSVPGEEAVRNFRKGQDVEAVV 430

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           + +D E   + L  K         L S A+     S+V G +  +   G  V+    + G
Sbjct: 431 LGIDLERERISLGIKQL---EGDPLTSYATGHEKGSIVKGTIKTVEAKGATVKLDSDMEG 487

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
           +   S+    +  D+   Y  G  + + I++V+ +   I LS+K    +  DA+ 
Sbjct: 488 YLRASEVSRDRVEDMRSHYKEGDEIEAMIINVDRKNRVINLSIKAKDMTEQDAAM 542



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 155/370 (41%), Gaps = 35/370 (9%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            +H +++ G V+  +++ +D     V    G+K+   +P + EF+  +   + KVG  + 
Sbjct: 24  LSHQEMRQGEVITAEIVGIDH--NFVTVNAGLKSESLIP-LEEFKNDQGEVEAKVGDFVS 80

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
             +  ++         +   K   A L   A   +  +  G +    K G  V    G++
Sbjct: 81  VAIESIEDGFGATKLSRERAKKLAAWLDLEAAMNEGRVVSGMVQGKVKGGLTV-LVGGLR 139

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQ----VVKC-RIMSSIPASRRINLSFMMKPTRVSEDD 665
            F P S + + P  + ++ Y   +    V+K  R  +++  SRR  L   M   R +  +
Sbjct: 140 AFLPGSLVDMRP-VKDTTPYEYKEMEFKVIKLDRKRNNVVVSRRAVLEETMGADREALME 198

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 724
            +K GS+V GVV  +T     V +   G   G +    +A   ++H T    V+  G E 
Sbjct: 199 SLKEGSIVKGVVKNITDYGAFVDL---GGIDGLLHITDMAWRRVKHPT---EVVHVGQEL 252

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCF 778
           + ++L  D E + + L  K        QL  D     A      + + G V N+ + G F
Sbjct: 253 EAKILRYDTEKNRVSLGLK--------QLGDDPWVGIARRYPQGTRMFGKVANLTDYGAF 304

Query: 779 VRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           V     + G    S+ +D    ++  SK   +G  V   +LD++ +  RI+L +KQ C S
Sbjct: 305 VEIEEGIEGLVHVSE-MDWTNKNVSPSKIVQLGDEVEVMVLDIDEDKRRISLGMKQ-CKS 362

Query: 837 STDASFMQEH 846
           +    F   H
Sbjct: 363 NPWEDFAMNH 372


>gi|297569509|ref|YP_003690853.1| ribosomal protein S1 [Desulfurivibrio alkaliphilus AHT2]
 gi|296925424|gb|ADH86234.1| ribosomal protein S1 [Desulfurivibrio alkaliphilus AHT2]
          Length = 568

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 163/369 (44%), Gaps = 35/369 (9%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            + ++ G V+ G V  +  +G  V   GG+  LC +  +S   +  P K +KVG E+  +
Sbjct: 193 RTSLEEGQVLTGSVTNITDYGVFVDL-GGMDGLCHITDLSWGRVSHPSKMYKVGDEIQVK 251

Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +L    ++ ++++  K+        I   Y          G +  I  +G FV    GV+
Sbjct: 252 ILKYDKENDKVSLGVKQLKSDPWETIQQRYPVGAK---VPGKVVSITDYGAFVELEEGVE 308

Query: 611 GFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK- 668
           G    SE+        PS +  VG  V+  +++  P ++RI+L   MK  + +  D+V  
Sbjct: 309 GLVHISEMSWSKKSRHPSKIVSVGDEVEVAVLNVDPEAKRISLG--MKQLQPNPWDMVAE 366

Query: 669 ---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
              +GS++ G +  +T   + +     G  +G     H++D     +  + +  PG ++ 
Sbjct: 367 NYPVGSIIEGKIKNITDFGIFI-----GIEEGIDGLIHVSD----LSWTERIKHPGEKYA 417

Query: 726 -----QLLVLDNESSNLLLSAKYSL-INSAQQLPSDAS--HIHPNSVVHGYVCNIIETGC 777
                Q +VL  +  N     ++SL I   Q  P +A+       + + G + N+ + G 
Sbjct: 418 KGETIQAVVLKIDKEN----ERFSLGIKQLQPDPWEAAVEKYAIGTKISGKITNVTDFGV 473

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV     + G    S+    +       Y VG ++ + +++V+++  +I LS+K +    
Sbjct: 474 FVELEEGIEGLVHVSELSKEKVETPVGLYNVGDNLEARVINVSAKDRKIGLSIK-ALSDE 532

Query: 838 TDASFMQEH 846
            +A+ ++E+
Sbjct: 533 GEAARIEEY 541



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/428 (19%), Positives = 176/428 (41%), Gaps = 74/428 (17%)

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNI 772
            + ++I   Y+F ++L  +   +N+++S +  +    Q+L  +  + +    V+ G V NI
Sbjct: 151  LDAMIGESYDF-KILKYNRRRNNVVISRRAIMEEERQKLREEMRTSLEEGQVLTGSVTNI 209

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             + G FV  LG + G    +    G+ +  SK Y VG  ++  IL  + E  +++L +KQ
Sbjct: 210  TDYGVFVD-LGGMDGLCHITDLSWGRVSHPSKMYKVGDEIQVKILKYDKENDKVSLGVKQ 268

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                S     +Q+ +                          +G+ + GKV    D+G  V
Sbjct: 269  --LKSDPWETIQQRYP-------------------------VGAKVPGKVVSITDYGAFV 301

Query: 893  SFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
              EE   V G +   +++ +         V  G  ++ A+L+V    + + L +K +  +
Sbjct: 302  ELEEG--VEGLVHISEMSWSKKSRHPSKIVSVGDEVEVAVLNVDPEAKRISLGMKQLQPN 359

Query: 945  RFREANSNRQA-----QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
             +     N         K K   +    +G+ + ++ ++ +                   
Sbjct: 360  PWDMVAENYPVGSIIEGKIKNITDFGIFIGIEEGIDGLIHV------------------- 400

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS 1059
            + +S     K P +++  G+++ A V+ +   +    L      I + +    + A +K 
Sbjct: 401  SDLSWTERIKHPGEKYAKGETIQAVVLKIDKENERFSL-----GIKQLQPDPWEAAVEK- 454

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
             Y +G+ +  +IT +    + ++   G  G +H++E++ +K   VE     + +G  + A
Sbjct: 455  -YAIGTKISGKITNVTDFGVFVELEEGIEGLVHVSELSKEK---VETPVGLYNVGDNLEA 510

Query: 1120 RIIAKSNK 1127
            R+I  S K
Sbjct: 511  RVINVSAK 518



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 94/449 (20%), Positives = 178/449 (39%), Gaps = 80/449 (17%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAI 576
           GV A  P   +     ++P +     +G    F++L    +R  + ++ +  + + +  +
Sbjct: 133 GVPAFLPYSQID----LRPVRDLDAMIGESYDFKILKYNRRRNNVVISRRAIMEEERQKL 188

Query: 577 LSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
                 + +   +  G +T I  +G FV    G+ G    ++L       PS MY VG  
Sbjct: 189 REEMRTSLEEGQVLTGSVTNITDYGVFVDL-GGMDGLCHITDLSWGRVSHPSKMYKVGDE 247

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
           ++ +I+     + +++L      +   E       +G+ V G V  +T     V +    
Sbjct: 248 IQVKILKYDKENDKVSLGVKQLKSDPWETIQQRYPVGAKVPGKVVSITDYGAFVELEEGV 307

Query: 694 YSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL 752
                I     +    H + + SV   G E +  +L +D E+  + L  K       Q  
Sbjct: 308 EGLVHISEMSWSKKSRHPSKIVSV---GDEVEVAVLNVDPEAKRISLGMK-----QLQPN 359

Query: 753 PSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG--QRADLSKT--- 805
           P D  A +    S++ G + NI + G F+             + +DG    +DLS T   
Sbjct: 360 PWDMVAENYPVGSIIEGKIKNITDFGIFIGI----------EEGIDGLIHVSDLSWTERI 409

Query: 806 ------YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 859
                 Y  G+++++ +L ++ E  R +L +KQ      +A+                  
Sbjct: 410 KHPGEKYAKGETIQAVVLKIDKENERFSLGIKQLQPDPWEAA------------------ 451

Query: 860 KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES--- 916
                    VE + IG+ I GK+    DFGV V  EE   + G +   +L+   VE+   
Sbjct: 452 ---------VEKYAIGTKISGKITNVTDFGVFVELEEG--IEGLVHVSELSKEKVETPVG 500

Query: 917 ----GSVIQAAILDVAKAERLVDLSLKTV 941
               G  ++A +++V+  +R + LS+K +
Sbjct: 501 LYNVGDNLEARVINVSAKDRKIGLSIKAL 529



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 21/258 (8%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKP 498
           I+D++   V    K YK G  ++V+IL + +  + ++ G+  LK+  +E +         
Sbjct: 227 ITDLSWGRVSHPSKMYKVGDEIQVKILKYDKENDKVSLGVKQLKSDPWETI---QQRYPV 283

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVL 554
           G  V GKV+++  +GA V+   GV+ L    H+SE    K    P K   VG E+   VL
Sbjct: 284 GAKVPGKVVSITDYGAFVELEEGVEGLV---HISEMSWSKKSRHPSKIVSVGDEVEVAVL 340

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  ++KRI++  K+        +  +Y   +   I  G I  I   G F+    G+ G 
Sbjct: 341 NVDPEAKRISLGMKQLQPNPWDMVAENYPVGS---IIEGKIKNITDFGIFIGIEEGIDGL 397

Query: 613 APRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--L 669
              S+L      + P   Y  G+ ++  ++     + R +L          E  + K  +
Sbjct: 398 IHVSDLSWTERIKHPGEKYAKGETIQAVVLKIDKENERFSLGIKQLQPDPWEAAVEKYAI 457

Query: 670 GSLVSGVVDVVTPNAVVV 687
           G+ +SG +  VT   V V
Sbjct: 458 GTKISGKITNVTDFGVFV 475



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 147/354 (41%), Gaps = 53/354 (14%)

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV 284
           +++EG VLT  V +I D+G  +  G     G     +L+     +     K G  +Q  +
Sbjct: 195 SLEEGQVLTGSVTNITDYGVFVDLG--GMDGLCHITDLSWGRVSHPSKMYKVGDEIQVKI 252

Query: 285 RSIDRTRK-----VVYLSSDP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
              D+        V  L SDP +T+ +      K       VPG +V     SI + G  
Sbjct: 253 LKYDKENDKVSLGVKQLKSDPWETIQQRYPVGAK-------VPGKVV-----SITDYGAF 300

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V I  +  +  + +     +   +V   +L VDP ++ + L +     NP
Sbjct: 301 VELEEGVEGLVHISEMSWSKKSRHPSKIVSVGDEVEVAVLNVDPEAKRISLGMKQLQPNP 360

Query: 394 Y-LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EE 448
           + ++    P   +   K+ +I D    + ++ G+  L             + +SD++  E
Sbjct: 361 WDMVAENYPVGSIIEGKIKNITDFGIFIGIEEGIDGL-------------IHVSDLSWTE 407

Query: 449 EVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGK 505
            ++   +KY +G  ++  +L   +  E  + GI  L+   +E  V  ++    G  + GK
Sbjct: 408 RIKHPGEKYAKGETIQAVVLKIDKENERFSLGIKQLQPDPWEAAVEKYA---IGTKISGK 464

Query: 506 VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           +  V  FG  V+   G++ L  +  +S+ ++  P   + VG  L  RV+ V +K
Sbjct: 465 ITNVTDFGVFVELEEGIEGLVHVSELSKEKVETPVGLYNVGDNLEARVINVSAK 518



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 87/424 (20%), Positives = 174/424 (41%), Gaps = 68/424 (16%)

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            +AI E E     R + ++S + G ++   +T I    + +  G G  G  HIT+++  + 
Sbjct: 178  RAIMEEERQKL-REEMRTSLEEGQVLTGSVTNITDYGVFVDLG-GMDGLCHITDLSWGR- 234

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
              V +    +K+G  +  +I+    + D     + +L   P   T+ +            
Sbjct: 235  --VSHPSKMYKVGDEIQVKILKYDKENDKVSLGVKQLKSDP-WETIQQ----------RY 281

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE-----PSELQEFQRRFHIGKAV 1216
             +G +V G V  + +  A + +   ++  + I + ++      PS++        +G  V
Sbjct: 282  PVGAKVPGKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHPSKI------VSVGDEV 335

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               VL+++ E K + L ++  Q        D+  +N       G I+ G+I  I     G
Sbjct: 336  EVAVLNVDPEAKRISLGMKQLQP----NPWDMVAENYPV----GSIIEGKIKNITDF--G 385

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            + + I   + G +H ++L           + E    P   Y +G+ ++  VL+I +    
Sbjct: 386  IFIGIEEGIDGLIHVSDLS----------WTERIKHPGEKYAKGETIQAVVLKIDKE--- 432

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
                  + R SL G+              P      +E  +    + G + NVT  G F+
Sbjct: 433  ------NERFSL-GIKQLQ----------PDPWEAAVEKYAIGTKISGKITNVTDFGVFV 475

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT-SDSRTA 1455
             L   ++  V +S LS   VE+P   + +G  +  RV++V    +++ +++K  SD   A
Sbjct: 476  ELEEGIEGLVHVSELSKEKVETPVGLYNVGDNLEARVINVSAKDRKIGLSIKALSDEGEA 535

Query: 1456 SQSE 1459
            ++ E
Sbjct: 536  ARIE 539



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 41/241 (17%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            + M+T + EG ++ G ++ I     G+ V +G  + G  H T+L    VS P   Y  G 
Sbjct: 190  EEMRTSLEEGQVLTGSVTNITDY--GVFVDLG-GMDGLCHITDLSWGRVSHPSKMYKVG- 245

Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
                   DE   ++ K+L+  +       V L ++             L +D        
Sbjct: 246  -------DE---IQVKILKYDKE---NDKVSLGVKQ------------LKSD------PW 274

Query: 1371 EKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKL 1428
            E I+   P    V G V ++T  G F+ L   ++  V +S +S       P K   +G  
Sbjct: 275  ETIQQRYPVGAKVPGKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHPSKIVSVGDE 334

Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V   VL+V+P +KR+ + +K                N  VG I+ G+IK +  +G+FI I
Sbjct: 335  VEVAVLNVDPEAKRISLGMKQLQPNPWDMV----AENYPVGSIIEGKIKNITDFGIFIGI 390

Query: 1489 E 1489
            E
Sbjct: 391  E 391



 Score = 40.4 bits (93), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            I++G +KN+T  G FI +   +D  + +S+LS    ++ P +++  G+ +   VL ++  
Sbjct: 373  IIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPGEKYAKGETIQAVVLKIDKE 432

Query: 1440 SKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            ++R  + +K    D   A+      +    +G  + G+I  V  +G+F+ +E
Sbjct: 433  NERFSLGIKQLQPDPWEAA------VEKYAIGTKISGKITNVTDFGVFVELE 478


>gi|397170590|ref|ZP_10494003.1| 30S ribosomal protein S1 [Alishewanella aestuarii B11]
 gi|396087833|gb|EJI85430.1| 30S ribosomal protein S1 [Alishewanella aestuarii B11]
          Length = 568

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 147/350 (42%), Gaps = 30/350 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 197 NLEEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIPVKVL 255

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
                 +R+++  K+       AI S Y E        G +T +  +GCFV    GV+G 
Sbjct: 256 KFDRDKQRVSLGLKQMGEDPWAAIASRYPEGAK---ISGRVTNLTDYGCFVEIEEGVEGL 312

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L          E+       
Sbjct: 313 VHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNK 372

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL 727
           G  VSG +  +T   + +     G   G     HL+D   ++T   +V   K G E   +
Sbjct: 373 GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAV 427

Query: 728 -LVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
            L +D E   + L  K        QL  D    ++  N   ++V G V  +   G  V  
Sbjct: 428 VLQVDPERERISLGIK--------QLDEDPFNDYLADNKKGAIVKGEVSAVDAKGATVML 479

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G + G+   S     +  D +    VG+++ + ++ V+ +   I+LS+K
Sbjct: 480 EGGVEGYVRVSDISRDRVEDATTALKVGEAIEARLMGVDRKNRVISLSIK 529



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 137/350 (39%), Gaps = 31/350 (8%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
           LE ++EGM +   VK++ D+G  +  G     G L   ++A      VK    +  V   
Sbjct: 195 LENLEEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKR---VKHPSEIVNVGDE 249

Query: 287 IDRTRKVVYLSSDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
           I    KV+    D   VS   K + +D           G  +S RV ++ + G  +    
Sbjct: 250 I--PVKVLKFDRDKQRVSLGLKQMGEDPWAAIASRYPEGAKISGRVTNLTDYGCFVEIEE 307

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLH- 397
              G V +  +  T    +     N    V   +L +D   R + L L     NP+    
Sbjct: 308 GVEGLVHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKANPWEEFA 367

Query: 398 ---NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 454
              N+      K+  I D    + +D G+  L+ +          ++ +   E+ VR+  
Sbjct: 368 KGFNKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNSTGEDAVREF- 418

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           KK  E   V +++   R    L    L    F   +   +D K G +VKG+V AVD+ GA
Sbjct: 419 KKGDEVHAVVLQVDPERERISLGIKQLDEDPFNDYL---ADNKKGAIVKGEVSAVDAKGA 475

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            V   GGV+    +  +S   +       KVG  +  R++GV  K   ++
Sbjct: 476 TVMLEGGVEGYVRVSDISRDRVEDATTALKVGEAIEARLMGVDRKNRVIS 525



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 171/429 (39%), Gaps = 71/429 (16%)

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVV 765
            HLEH  +   VIK          LD + +N+++S +  + + S+Q+      ++     V
Sbjct: 155  HLEHKELEFKVIK----------LDQKRNNVVVSRRAVIESESSQERDQLLENLEEGMEV 204

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
             G V N+ + G FV  LG + G    +     +    S+   VG  +   +L  + +  R
Sbjct: 205  KGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEIPVKVLKFDRDKQR 263

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            ++L LKQ               + E+  A + S    G++            I G+V   
Sbjct: 264  VSLGLKQ---------------MGEDPWAAIASRYPEGAK------------ISGRVTNL 296

Query: 886  NDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             D+G  V  EE      H     +   +      V  G  ++  +L++ +  R + L LK
Sbjct: 297  TDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLK 356

Query: 940  TVFIDRFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 998
                + + E A    +  +   K ++  D G+   ++  ++      + LS   +N S G
Sbjct: 357  QCKANPWEEFAKGFNKGDRVSGKIKSITDFGIFIGLDGGID----GLVHLSDISWN-STG 411

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK 1058
              +V          ++F  G  V A V+ +       R+ L +K + E   +      KK
Sbjct: 412  EDAV----------REFKKGDEVHAVVLQVDPERE--RISLGIKQLDEDPFNDYLADNKK 459

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
                 G++V+ E++ +      +    G  G + +++++ D+   VE+  +  K+G+ + 
Sbjct: 460  -----GAIVKGEVSAVDAKGATVMLEGGVEGYVRVSDISRDR---VEDATTALKVGEAIE 511

Query: 1119 ARIIAKSNK 1127
            AR++    K
Sbjct: 512  ARLMGVDRK 520



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVL 554
           G  V GK+ ++  FG  +   GG+  L    H+S+      G    ++FK G E+   VL
Sbjct: 373 GDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNSTGEDAVREFKKGDEVHAVVL 429

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  + +RI++  K+     +       A+     I  G ++ ++  G  V    GV+G+
Sbjct: 430 QVDPERERISLGIKQL---DEDPFNDYLADNKKGAIVKGEVSAVDAKGATVMLEGGVEGY 486

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
              S++  D   + ++   VG+ ++ R+M     +R I+LS   K
Sbjct: 487 VRVSDISRDRVEDATTALKVGEAIEARLMGVDRKNRVISLSIKAK 531



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 101/483 (20%), Positives = 189/483 (39%), Gaps = 69/483 (14%)

Query: 489 LVFTHS----DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 544
           L+F  S    + +PG +VKG V+AV     +V    G+K+   +P + +F+ +    +  
Sbjct: 16  LLFEESLKAIETRPGAIVKGTVVAV--LKDVVMVDAGLKSEAAIP-VEQFKSLSGEIEVN 72

Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
           VG  +   +  ++         +   K   A +       D+    G IT   K G F  
Sbjct: 73  VGDIIDVALDAIEDGFGETLLSREKAKRHEAWVRLEKACEDKETVIGVITGKVK-GGFTV 131

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTR 660
             +G++ F P S + + P  + + + H     +V+K  +  +++  SRR  +       R
Sbjct: 132 EVDGIRAFLPGSLVDVRPVRDTAHLEHKELEFKVIKLDQKRNNVVVSRRAVIESESSQER 191

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
               + ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++ 
Sbjct: 192 DQLLENLEEGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVN 245

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNII 773
            G E   ++L  D +   + L  K        Q+  D     AS     + + G V N+ 
Sbjct: 246 VGDEIPVKVLKFDRDKQRVSLGLK--------QMGEDPWAAIASRYPEGAKISGRVTNLT 297

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + GCFV     + G    S+ +D    ++  SK   +G +V   +L+++ E  RI+L LK
Sbjct: 298 DYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLK 356

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
           Q C ++    F +                          GF  G  + GK+    DFG+ 
Sbjct: 357 Q-CKANPWEEFAK--------------------------GFNKGDRVSGKIKSITDFGIF 389

Query: 892 VSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
           +  +       H     + +  + A    + G  + A +L V      + L +K +  D 
Sbjct: 390 IGLDGGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQLDEDP 449

Query: 946 FRE 948
           F +
Sbjct: 450 FND 452



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 137/331 (41%), Gaps = 56/331 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A++    PSE+       ++G  +   
Sbjct: 201  GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEIPVK 253

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  +++K+ + L L+   +   D    I+     +   EG  + GR++ +     G  V
Sbjct: 254  VLKFDRDKQRVSLGLKQMGE---DPWAAIA-----SRYPEGAKISGRVTNLTDY--GCFV 303

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VLEI    R    
Sbjct: 304  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNLGDAVEVMVLEIDEERR---- 349

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL G+    ++        P +   K    +    V G +K++T  G FI L 
Sbjct: 350  -----RISL-GLKQCKAN--------PWEEFAK--GFNKGDRVSGKIKSITDFGIFIGLD 393

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +   E   +EF  G  V   VL V+P  +R+ + +K  D    +  
Sbjct: 394  GGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQLDEDPFN-- 451

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              + L++   G IV G++  V++ G  + +E
Sbjct: 452  --DYLADNKKGAIVKGEVSAVDAKGATVMLE 480


>gi|237808314|ref|YP_002892754.1| 30S ribosomal protein S1 [Tolumonas auensis DSM 9187]
 gi|237500575|gb|ACQ93168.1| ribosomal protein S1 [Tolumonas auensis DSM 9187]
          Length = 556

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 145/347 (41%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 SSLQEGHEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKV 245

Query: 554 LGVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  V+   K+      +AI   Y E   RL   G +T +  +GCFV    GV+G
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGA-RLT--GRVTNLTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    PS + +VG  V+  ++      RRI+L        P +   +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDTVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHA 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   +AT   +V   K G E +
Sbjct: 363 K-GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNATGEDAVREFKKGDEIE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  SD       ++V G V  +   G  +     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLSDNKK---GAIVKGKVTAVDSKGATIELEEG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   + A   +  D S    VG  V +  + V+ +   ++LS++
Sbjct: 474 VEGYIRSADASRDRVEDASLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 193/481 (40%), Gaps = 85/481 (17%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP------HMSEFEIVKPGKKFKVGAE 548
           + +PG +VKG V+A+++   IV    G+K+   +P       + E E V  G    V  +
Sbjct: 17  ETRPGAIVKGTVVAIEN--GIVLVDAGLKSESAIPAEQFKNALGELE-VALGDVVDVALD 73

Query: 549 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYN 607
            V    G   + +    K    ++ L +  +Y E AT   + +G +      G F    N
Sbjct: 74  SVEDGFG---ETLLSREKAKRHEAWLQLEKAYEEQATVVGLINGKV-----KGGFTVELN 125

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 661
           G++ F P S + + P  + + +   G+ ++ +++      +++  SRR  +       R 
Sbjct: 126 GIRAFLPGSLVDVRPVRDTAHLE--GKELEFKVIKLDQKRNNVVVSRRAVIETENSSERD 183

Query: 662 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 720
           S    ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++  
Sbjct: 184 SLLSSLQEGHEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNV 237

Query: 721 GYEFD-QLLVLDNESSNLLLSAKY----SLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           G E   ++L  D E + + L  K       +  A++ P  A        + G V N+ + 
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGAR-------LTGRVTNLTDY 290

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           GCFV     + G    S+ +D    ++  SK   VG +V   +LD++ E  RI+L LKQ 
Sbjct: 291 GCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDTVEVMVLDIDEERRRISLGLKQ- 348

Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
           C ++    F + H                            G  + GK+    DFG+ + 
Sbjct: 349 CKANPWQQFAETH--------------------------AKGDRVSGKIKSITDFGIFIG 382

Query: 894 FEEHSDVYGFITHHQLA-GATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDR 945
            +   D  G +    ++  AT E        G  I+A +L V      + L +K +  D 
Sbjct: 383 LDGGID--GLVHLSDISWNATGEDAVREFKKGDEIEAVVLQVDPERERISLGVKQIEEDP 440

Query: 946 F 946
           F
Sbjct: 441 F 441



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 137/357 (38%), Gaps = 45/357 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L ++QEG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LSSLQEGHEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGARLTGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N    V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDTVEVMVLDIDEERRRISLGLKQCKA 351

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      H +      K+  I D    + +D G+  L+ +          ++ +   E
Sbjct: 352 NPWQQFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNATGE 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           + VR+  KK  E   V +++   R    L    ++   F   +   SD K G +VKGKV 
Sbjct: 404 DAVREF-KKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYL---SDNKKGAIVKGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           AVDS GA ++   GV+        S   +        VG E+  + +GV  K  TV+
Sbjct: 460 AVDSKGATIELEEGVEGYIRSADASRDRVEDASLVLSVGDEVEAKFMGVDRKNRTVS 516



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 56/331 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A++    PSE+       ++G  +T  
Sbjct: 192  GHEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEITVK 244

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++E+  + L L+   +   D  V I+         EG  + GR++ +     G  V
Sbjct: 245  VLKFDRERTRVSLGLKQLGE---DPWVAIAKR-----YPEGARLTGRVTNLTDY--GCFV 294

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VL+I    R    
Sbjct: 295  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNVGDTVEVMVLDIDEERR---- 340

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL G+    ++      +T  K             V G +K++T  G FI L 
Sbjct: 341  -----RISL-GLKQCKANPWQQFAETHAKGDR----------VSGKIKSITDFGIFIGLD 384

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +   E   +EF  G  +   VL V+P  +R+ + +K  +    ++ 
Sbjct: 385  GGIDGLVHLSDISWNATGEDAVREFKKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKY 444

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
                LS+   G IV G++  V+S G  I +E
Sbjct: 445  ----LSDNKKGAIVKGKVTAVDSKGATIELE 471


>gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
 gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
          Length = 403

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 14/162 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FG+ +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVVEGKVSRLTNFGSFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SE+      +PS +  VGQ VK ++++  P  RRI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSI 351



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 53/237 (22%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVVEGKVSRLTNF--GSFIDVG-GVDGLVHISEISYKHVDKP--------SDVLK---V 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPN 343

Query: 1440 SKRVEVTLKTSDS-------------RTASQSEIN------NLSNLHVGDIVIGQIK 1477
             +R+ +++K +DS             R+ +++ +N      N +   +GDI+  Q+K
Sbjct: 344  DRRISLSIKAADSNSSSSDNHNSRPRRSRNENTVNKKYMSDNDNGFALGDIIGDQLK 400



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 130/312 (41%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGSFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             +  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+K +
Sbjct: 343 NDRRISLSIKAA 354



 Score = 44.3 bits (103), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGSFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     ++L+ GDI  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDIFEGEVKSLTNFGAFVEV 302


>gi|260101629|ref|ZP_05751866.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|417007625|ref|ZP_11945400.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
 gi|260084562|gb|EEW68682.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|328467366|gb|EGF38444.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
          Length = 403

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FG  +   GGV  L  +  +S   + KP    K G ++  +V+G+  
Sbjct: 198 GDVIEGKVSRLTNFGGFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKIKVIGIDD 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 34/197 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD++ G++S+ L+  GG +   G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSR-LTNFGGFIDVGG--VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKIKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1440 SKRVEVTLKTSDSRTAS 1456
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 133/320 (41%), Gaps = 36/320 (11%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VK G KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKLGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGGFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +D++   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKIKVIGIDDDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLK--QSCCSSTD 839
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362



 Score = 41.2 bits (95), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGGFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKIKVIGIDDDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     ++L+ GD+  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDVFEGEVKSLTNFGAFVEV 302


>gi|388469683|ref|ZP_10143892.1| ribosomal protein S1 [Pseudomonas synxantha BG33R]
 gi|388006380|gb|EIK67646.1| ribosomal protein S1 [Pseudomonas synxantha BG33R]
          Length = 561

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGTVKEVDAKGAIITLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGTVKEVDAKGAIITL 472



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGTVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 40.8 bits (94), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 145/382 (37%), Gaps = 64/382 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPESTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V  +     G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEYVQEND---KG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   +       K G E+  +++ V  K
Sbjct: 454 AIVKGTVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAILS 578
           S+ I ++ K K  V+ K AI S
Sbjct: 514 SRVIQLSIKSKDEVEEKEAIQS 535


>gi|442321086|ref|YP_007361107.1| 30S ribosomal protein S1 [Myxococcus stipitatus DSM 14675]
 gi|441488728|gb|AGC45423.1| 30S ribosomal protein S1 [Myxococcus stipitatus DSM 14675]
          Length = 570

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 147/360 (40%), Gaps = 28/360 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  ++K G V+KG V  +  +GA +   GG+  L  +  MS   I  P + F VG E+  
Sbjct: 201 TLKNLKEGAVLKGVVKNLTDYGAFIDL-GGIDGLLHITDMSWGRIGHPSEMFNVGDEVRV 259

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL      +R+++  K+            Y   T      G +  I  +G F+    GV
Sbjct: 260 VVLKFDPTQERVSLGLKQIQEDPWHRADEKYPVGTR---VRGKVVSITDYGAFIEIEQGV 316

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
           +G    SE+      + PS +  VGQ V+  ++   P ++RI L        P  + ED 
Sbjct: 317 EGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQIEQNPWTLLEDK 376

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKP 720
              +GS++ G +  VT   V V     G  +G     H++D      ++H   M    K 
Sbjct: 377 Y-PIGSVIKGQIRNVTDFGVFV-----GVEEGVDGLVHVSDISWTQRIKHPGEM---FKK 427

Query: 721 GYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E + +++ +D E+    L  K    +  + L   +  +   S V G V  + + G FV
Sbjct: 428 GDEVEAVVLNIDVENERFSLGIKQLQPDPWETL---SERLPVGSRVKGKVTKVTDFGAFV 484

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                + G    S+  + +  +        Q V   I+D+N+   ++ LS+K       D
Sbjct: 485 EIEPGIEGLVHVSELKEERVENPRDVVQEAQDVEVKIIDINTPDRKVALSMKALIGEGDD 544



 Score = 47.0 bits (110), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G V ++T  G FI + + ++  V +S +S    ++ P K   +G+ V   VL ++P +
Sbjct: 296  VRGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKA 355

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            KR+ + +K  +    +  E        +G ++ GQI+ V  +G+F+ +E
Sbjct: 356  KRIALGMKQIEQNPWTLLE----DKYPIGSVIKGQIRNVTDFGVFVGVE 400



 Score = 47.0 bits (110), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 138/332 (41%), Gaps = 43/332 (12%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
           +L+ ++EG VL   VK++ D+G  +  G     G L   +++   G    P  +      
Sbjct: 201 TLKNLKEGAVLKGVVKNLTDYGAFIDLG--GIDGLLHITDMS--WGRIGHPSEMF----- 251

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL------VP-GMMVSTRVQSILENGVM 338
           ++    +VV L  DP    + V+  LK I  D         P G  V  +V SI + G  
Sbjct: 252 NVGDEVRVVVLKFDP--TQERVSLGLKQIQEDPWHRADEKYPVGTRVRGKVVSITDYGAF 309

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  T    +        ++V A +L +DP ++ + L +     NP
Sbjct: 310 IEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQIEQNP 369

Query: 394 Y-LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVR 451
           + LL ++ P   V  G I + +         G+ + +          V +SD++  + ++
Sbjct: 370 WTLLEDKYPIGSVIKGQIRNVTD-------FGVFVGVEE---GVDGLVHVSDISWTQRIK 419

Query: 452 KLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKP-GMVVKGKVI 507
              + +K+G  V   +L      E  + GI  L+   +E    T S+  P G  VKGKV 
Sbjct: 420 HPGEMFKKGDEVEAVVLNIDVENERFSLGIKQLQPDPWE----TLSERLPVGSRVKGKVT 475

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
            V  FGA V+   G++ L  +  + E  +  P
Sbjct: 476 KVTDFGAFVEIEPGIEGLVHVSELKEERVENP 507



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 112/267 (41%), Gaps = 54/267 (20%)

Query: 1271 LSGVGGLVVQIGPHLYGRV-HFTELKNICVS--------DPLS-----GYDEGQFDPLSG 1316
            L G+ GL+  I    +GR+ H +E+ N+           DP       G  + Q DP   
Sbjct: 227  LGGIDGLL-HITDMSWGRIGHPSEMFNVGDEVRVVVLKFDPTQERVSLGLKQIQEDPWHR 285

Query: 1317 YDE----GQFVKCKV---------LEISRTVRGTFHV-ELSLRSSLDGMS-----STNSS 1357
             DE    G  V+ KV         +EI + V G  HV E+S    L   S          
Sbjct: 286  ADEKYPVGTRVRGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVE 345

Query: 1358 DLSTDVDTPGK-------HLEK-----IEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDA 1404
             +  D+D   K        +E+     +ED  P   +++G ++NVT  G F+ +   +D 
Sbjct: 346  AVVLDIDPKAKRIALGMKQIEQNPWTLLEDKYPIGSVIKGQIRNVTDFGVFVGVEEGVDG 405

Query: 1405 KVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
             V +S++S    ++ P + F  G  V   VL+++  ++R  + +K              L
Sbjct: 406  LVHVSDISWTQRIKHPGEMFKKGDEVEAVVLNIDVENERFSLGIK-----QLQPDPWETL 460

Query: 1464 SN-LHVGDIVIGQIKRVESYGLFITIE 1489
            S  L VG  V G++ +V  +G F+ IE
Sbjct: 461  SERLPVGSRVKGKVTKVTDFGAFVEIE 487



 Score = 41.2 bits (95), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 149/367 (40%), Gaps = 52/367 (14%)

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF--P 1011
            + Q+++ K+E  K+L     +  +V+ + +    + L   +   G   ++D +  +   P
Sbjct: 191  EKQREEMKKETLKNLKEGAVLKGVVKNLTDYGAFIDLGGID---GLLHITDMSWGRIGHP 247

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             + F  G  V   V+ L    T  R+ L LK I E       RA +K  Y VG+ V+ ++
Sbjct: 248  SEMFNVGDEV--RVVVLKFDPTQERVSLGLKQIQE---DPWHRADEK--YPVGTRVRGKV 300

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              I      ++   G  G +H++E++  K   +++     ++GQ V A ++     P  K
Sbjct: 301  VSITDYGAFIEIEQGVEGLVHVSEMSWTKR--LKHPSKILEVGQEVEAVVL--DIDPKAK 356

Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            +  L    I+ +  T+ E             IG  + G +  V +    + +   +   +
Sbjct: 357  RIALGMKQIEQNPWTLLE---------DKYPIGSVIKGQIRNVTDFGVFVGVEEGVDGLV 407

Query: 1192 FILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
             + D ++      P E+      F  G  V   VL+I+ E +   L ++  Q        
Sbjct: 408  HVSDISWTQRIKHPGEM------FKKGDEVEAVVLNIDVENERFSLGIKQLQ-------- 453

Query: 1247 DISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
                D  +T       G  V G+++K+     G  V+I P + G VH +ELK   V +P 
Sbjct: 454  ---PDPWETLSERLPVGSRVKGKVTKVTDF--GAFVEIEPGIEGLVHVSELKEERVENPR 508

Query: 1304 SGYDEGQ 1310
                E Q
Sbjct: 509  DVVQEAQ 515


>gi|40062482|gb|AAR37434.1| ribosomal protein S1 [uncultured marine bacterium 105]
          Length = 589

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 164/382 (42%), Gaps = 44/382 (11%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG--AEL 549
           T S +  G V+KG V  +  +GA V   GG   L  +  MS   +  P + FK+   AE+
Sbjct: 221 TLSTLAEGKVIKGIVKNLTDYGAFVDL-GGFDGLLHITDMSWGRVSHPSELFKINDEAEV 279

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           +      +++R+++ +K+ +      +   Y    +R+  +G I  +  +G FV    GV
Sbjct: 280 IVLKFDPETERVSLGYKQLIADPWDGVGDRYP-VNERV--NGRIVSLTDYGAFVELEPGV 336

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----D 664
           +G    SE+      + PS +  VG  V+  +++  P +RRI+L   +K   V+      
Sbjct: 337 EGLIHVSEMSWSKRVKHPSKILTVGDTVEALVLAVDPNARRISLG--LKQIEVNPWLQIA 394

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
           D   LG+ ++G V  VT     V V      +G     H++D      L+H +    V+ 
Sbjct: 395 DRYPLGTKITGTVRNVTEFGAFVEV-----EEGVDGLIHISDMSWSKRLQHPS---EVVN 446

Query: 720 PGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            G E + +++ +D E+  L L  K    +   +  S+ S      VV G +  +   G F
Sbjct: 447 KGDEVESVVLNVDAENQRLSLGLKQLSTDIWDEFLSNNS---AGDVVEGKIVKLTNFGAF 503

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK------- 831
           V     + G    S+  D ++ D      V Q+    I+ +++   +I LS++       
Sbjct: 504 VELADGIEGLIHISE-FDDEQGDEKIELEVDQAYSMKIIKLSAVDRKIGLSIRALKLGDE 562

Query: 832 ------QSCCSSTDASFMQEHF 847
                 Q   SS+  + + +HF
Sbjct: 563 AVDWTSQDEQSSSPEATLGDHF 584



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G V+NVT  G F+ +   +D  + +S++S    ++ P +    G  V   VL+V+  +
Sbjct: 403  ITGTVRNVTEFGAFVEVEEGVDGLIHISDMSWSKRLQHPSEVVNKGDEVESVVLNVDAEN 462

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            +R+ + LK   +    +     LSN   GD+V G+I ++ ++G F+ + +
Sbjct: 463  QRLSLGLKQLSTDIWDEF----LSNNSAGDVVEGKIVKLTNFGAFVELAD 508



 Score = 40.8 bits (94), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 13/116 (11%)

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVE 1437
            N  V G + ++T  G F+ L   ++  + +S +S    V+ P K   +G  V   VL+V+
Sbjct: 313  NERVNGRIVSLTDYGAFVELEPGVEGLIHVSEMSWSKRVKHPSKILTVGDTVEALVLAVD 372

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFITIE 1489
            P ++R+ + LK        Q E+N    +     +G  + G ++ V  +G F+ +E
Sbjct: 373  PNARRISLGLK--------QIEVNPWLQIADRYPLGTKITGTVRNVTEFGAFVEVE 420


>gi|108763761|ref|YP_631975.1| 30S ribosomal protein S1 [Myxococcus xanthus DK 1622]
 gi|338535064|ref|YP_004668398.1| 30S ribosomal protein S1 [Myxococcus fulvus HW-1]
 gi|405374166|ref|ZP_11028736.1| SSU ribosomal protein S1p [Chondromyces apiculatus DSM 436]
 gi|108467641|gb|ABF92826.1| ribosomal protein S1 [Myxococcus xanthus DK 1622]
 gi|337261160|gb|AEI67320.1| 30S ribosomal protein S1 [Myxococcus fulvus HW-1]
 gi|397087178|gb|EJJ18240.1| SSU ribosomal protein S1p [Myxococcus sp. (contaminant ex DSM 436)]
          Length = 570

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 147/360 (40%), Gaps = 28/360 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  ++K G V+KG V  +  +GA +   GG+  L  +  MS   I  P + F VG E+  
Sbjct: 201 TLKNLKEGAVLKGVVKNLTDYGAFIDL-GGIDGLLHITDMSWGRIGHPSEMFNVGDEVRV 259

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL      +R+++  K+            Y   T      G +  I  +G F+    GV
Sbjct: 260 VVLKFDPTQERVSLGLKQIQEDPWHRADEKYPVGTR---VRGKVVSITDYGAFIEIEQGV 316

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
           +G    SE+      + PS +  VGQ V+  ++   P ++RI L        P  + ED 
Sbjct: 317 EGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQIEQNPWTLLEDK 376

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKP 720
              +GS++ G +  VT   V V     G  +G     H++D      ++H   M    K 
Sbjct: 377 Y-PIGSVIKGQIRNVTDFGVFV-----GVEEGVDGLVHVSDISWTVRIKHPGEM---FKK 427

Query: 721 GYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E + +++ +D E+    L  K    +  + L   +  +   S V G V  + + G FV
Sbjct: 428 GDEVEAVVLNIDVENERFSLGIKQLQPDPWETL---SERLPVGSRVKGKVTKVTDFGAFV 484

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                + G    S+  + +  +        Q V   I+D+N+   ++ LS+K       D
Sbjct: 485 EIEPGIEGLVHVSELKEERVENPRDVVQEAQDVEVKIIDINTPDRKVALSMKALIGEGED 544



 Score = 47.4 bits (111), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G V ++T  G FI + + ++  V +S +S    ++ P K   +G+ V   VL ++P +
Sbjct: 296  VRGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKA 355

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            KR+ + +K  +    +  E        +G ++ GQI+ V  +G+F+ +E 
Sbjct: 356  KRIALGMKQIEQNPWTLLE----DKYPIGSVIKGQIRNVTDFGVFVGVEE 401



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 137/332 (41%), Gaps = 43/332 (12%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
           +L+ ++EG VL   VK++ D+G  +  G     G L   +++   G    P  +      
Sbjct: 201 TLKNLKEGAVLKGVVKNLTDYGAFIDLG--GIDGLLHITDMS--WGRIGHPSEMF----- 251

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL------VP-GMMVSTRVQSILENGVM 338
           ++    +VV L  DP    + V+  LK I  D         P G  V  +V SI + G  
Sbjct: 252 NVGDEVRVVVLKFDP--TQERVSLGLKQIQEDPWHRADEKYPVGTRVRGKVVSITDYGAF 309

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  T    +        ++V A +L +DP ++ + L +     NP
Sbjct: 310 IEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQIEQNP 369

Query: 394 Y-LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE-EVR 451
           + LL ++ P   V  G I + +         G+ + +          V +SD++    ++
Sbjct: 370 WTLLEDKYPIGSVIKGQIRNVTD-------FGVFVGVEE---GVDGLVHVSDISWTVRIK 419

Query: 452 KLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKP-GMVVKGKVI 507
              + +K+G  V   +L      E  + GI  L+   +E    T S+  P G  VKGKV 
Sbjct: 420 HPGEMFKKGDEVEAVVLNIDVENERFSLGIKQLQPDPWE----TLSERLPVGSRVKGKVT 475

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
            V  FGA V+   G++ L  +  + E  +  P
Sbjct: 476 KVTDFGAFVEIEPGIEGLVHVSELKEERVENP 507



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 149/367 (40%), Gaps = 52/367 (14%)

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF--P 1011
            + Q+++ K+E  K+L     +  +V+ + +    + L   +   G   ++D +  +   P
Sbjct: 191  EKQREEMKKETLKNLKEGAVLKGVVKNLTDYGAFIDLGGID---GLLHITDMSWGRIGHP 247

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             + F  G  V   V+ L    T  R+ L LK I E       RA +K  Y VG+ V+ ++
Sbjct: 248  SEMFNVGDEV--RVVVLKFDPTQERVSLGLKQIQE---DPWHRADEK--YPVGTRVRGKV 300

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              I      ++   G  G +H++E++  K   +++     ++GQ V A ++     P  K
Sbjct: 301  VSITDYGAFIEIEQGVEGLVHVSEMSWTKR--LKHPSKILEVGQEVEAVVL--DIDPKAK 356

Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            +  L    I+ +  T+ E             IG  + G +  V +    + +   +   +
Sbjct: 357  RIALGMKQIEQNPWTLLE---------DKYPIGSVIKGQIRNVTDFGVFVGVEEGVDGLV 407

Query: 1192 FILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
             + D ++      P E+      F  G  V   VL+I+ E +   L ++  Q        
Sbjct: 408  HVSDISWTVRIKHPGEM------FKKGDEVEAVVLNIDVENERFSLGIKQLQ-------- 453

Query: 1247 DISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
                D  +T       G  V G+++K+     G  V+I P + G VH +ELK   V +P 
Sbjct: 454  ---PDPWETLSERLPVGSRVKGKVTKVTDF--GAFVEIEPGIEGLVHVSELKEERVENPR 508

Query: 1304 SGYDEGQ 1310
                E Q
Sbjct: 509  DVVQEAQ 515



 Score = 41.2 bits (95), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 112/267 (41%), Gaps = 54/267 (20%)

Query: 1271 LSGVGGLVVQIGPHLYGRV-HFTELKNICVS--------DPLS-----GYDEGQFDPLSG 1316
            L G+ GL+  I    +GR+ H +E+ N+           DP       G  + Q DP   
Sbjct: 227  LGGIDGLL-HITDMSWGRIGHPSEMFNVGDEVRVVVLKFDPTQERVSLGLKQIQEDPWHR 285

Query: 1317 YDE----GQFVKCKV---------LEISRTVRGTFHV-ELSLRSSLDGMS-----STNSS 1357
             DE    G  V+ KV         +EI + V G  HV E+S    L   S          
Sbjct: 286  ADEKYPVGTRVRGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVE 345

Query: 1358 DLSTDVDTPGK-------HLEK-----IEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDA 1404
             +  D+D   K        +E+     +ED  P   +++G ++NVT  G F+ +   +D 
Sbjct: 346  AVVLDIDPKAKRIALGMKQIEQNPWTLLEDKYPIGSVIKGQIRNVTDFGVFVGVEEGVDG 405

Query: 1405 KVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
             V +S++S    ++ P + F  G  V   VL+++  ++R  + +K              L
Sbjct: 406  LVHVSDISWTVRIKHPGEMFKKGDEVEAVVLNIDVENERFSLGIK-----QLQPDPWETL 460

Query: 1464 SN-LHVGDIVIGQIKRVESYGLFITIE 1489
            S  L VG  V G++ +V  +G F+ IE
Sbjct: 461  SERLPVGSRVKGKVTKVTDFGAFVEIE 487


>gi|355574274|ref|ZP_09044117.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
           str. F0356]
 gi|354818564|gb|EHF03053.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
           str. F0356]
          Length = 390

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++PGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +V
Sbjct: 202 SKLQPGMRLKGSVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T       ++  Y       I  G +TK+   G FV   NGV+G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRTLVKKYPVGA---IVEGTVTKLVTFGAFVDLGNGVEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+       P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDRRRISLSM 360



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 58/369 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDINPEDVVALGDGIEALVLQKEDKE 95

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +     RV E      G  V G V  V    +++ +  +G+    +P  
Sbjct: 96  GRLILSKKRAEYERAWNRVEEK--FNAGENVEGEVIEVVKGGLILDIGLRGF----LPA- 148

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
            L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+  S + P
Sbjct: 149 SLVD-LRRVKDLNAFLGTRIEA-RVIEMDRNRNNVVLSRRVVLEEARKAERSEILSKLQP 206

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 207 GMRLKGSVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDL 265

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 878
              RI+L LKQ+                              +E  W   V+ + +G+++
Sbjct: 266 NRERISLGLKQT------------------------------TEDPWRTLVKKYPVGAIV 295

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 931
           EG V +   FG  V     + V G +   ++A   V++       G  +Q  ++++    
Sbjct: 296 EGTVTKLVTFGAFVDL--GNGVEGLVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDR 353

Query: 932 RLVDLSLKT 940
           R + LS+K+
Sbjct: 354 RRISLSMKS 362



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 144/340 (42%), Gaps = 63/340 (18%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH------I 1212
             D   G  VTG V K++++  LL I    K++  I      PS     ++  +      +
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIG--FKSEGVI------PSRELSIRKDINPEDVVAL 80

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKI 1270
            G  +   VL   KE K  RL+L       S K  +     + ++   + G+ V G + ++
Sbjct: 81   GDGIEALVL--QKEDKEGRLIL-------SKKRAEYERAWNRVEEKFNAGENVEGEVIEV 131

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            + G  GL++ IG  L G +            P S  D  +   L+ +  G  ++ +V+E+
Sbjct: 132  VKG--GLILDIG--LRGFL------------PASLVDLRRVKDLNAF-LGTRIEARVIEM 174

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
             R      +V LS R  L+       S++             +  L P M ++G V ++ 
Sbjct: 175  DRN---RNNVVLSRRVVLEEARKAERSEI-------------LSKLQPGMRLKGSVSSIV 218

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
              G F+ L   +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK  
Sbjct: 219  DFGAFVDLG-GIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK-- 275

Query: 1451 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              +T        +    VG IV G + ++ ++G F+ + N
Sbjct: 276  --QTTEDPWRTLVKKYPVGAIVEGTVTKLVTFGAFVDLGN 313


>gi|333998121|ref|YP_004530733.1| cytidylate kinase/30S ribosomal protein S1 [Treponema primitia
           ZAS-2]
 gi|333738275|gb|AEF83765.1| cytidylate kinase/ribosomal protein S1 [Treponema primitia ZAS-2]
          Length = 798

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 31/345 (8%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK 559
           + G+V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V+ +  + K
Sbjct: 431 ITGEVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIRLKVIRIDPQEK 489

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           RI ++ K       +     Y    D  +  G +TK+   G FV    G++G    SE  
Sbjct: 490 RINLSLKHFTDDPWVHFEDKY-HVND--VIKGKVTKLTDFGAFVELEEGIEGLVHISEFS 546

Query: 620 LDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGV 676
                + P  +  +G   +C I+     + R++L    +        ++   LG+ ++  
Sbjct: 547 WVKKIQKPEELLSIGDETECMILGYDLQAGRVSLGLKQVTANPWTGIEERYPLGTRLTRK 606

Query: 677 VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-------QLLV 729
           V  +T NA     +  G   G +       H +  +  K V  PG EF         ++ 
Sbjct: 607 VAKIT-NAGAFIELEDGID-GFL-------HGDDISWTKKVKHPGSEFAAGQEIEVMVIS 657

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
           +D E+ N+ L  K     S     S AS   P S+V G V ++ + G FVR  G + G  
Sbjct: 658 IDPENKNIRLGIKQL---SEDPWQSFASAYKPGSLVEGEVSSVTDFGIFVRIPGGIEGLI 714

Query: 790 PRSKAVDGQR---ADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            +S   + +     +L K Y +G  +++ +L++  +  ++  S+K
Sbjct: 715 HKSNLPENREDNPDELLKKYQIGDKIKAVVLELQPDKQKVAFSIK 759



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 123/281 (43%), Gaps = 25/281 (8%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           I+D++   V + +   K+G  +R++++     E      LK    +  V          V
Sbjct: 456 INDMSWGHVTRPKDFVKKGQEIRLKVIRIDPQEKRINLSLKHFTDDPWVHFEDKYHVNDV 515

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAELVFRVLG-- 555
           +KGKV  +  FGA V+   G++ L    H+SEF    +I KP +   +G E    +LG  
Sbjct: 516 IKGKVTKLTDFGAFVELEEGIEGLV---HISEFSWVKKIQKPEELLSIGDETECMILGYD 572

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +++ R+++  K+        I   Y   T RL     + KI   G F+   +G+ GF   
Sbjct: 573 LQAGRVSLGLKQVTANPWTGIEERYPLGT-RLTRK--VAKITNAGAFIELEDGIDGFLHG 629

Query: 616 SELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------VK 668
            ++      + P S +  GQ ++  ++S  P ++ I L       ++SED         K
Sbjct: 630 DDISWTKKVKHPGSEFAAGQEIEVMVISIDPENKNIRLGI----KQLSEDPWQSFASAYK 685

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
            GSLV G V  VT   + V +   G  +G I   +L ++ E
Sbjct: 686 PGSLVEGEVSSVTDFGIFVRI--PGGIEGLIHKSNLPENRE 724



 Score = 48.1 bits (113), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 143/362 (39%), Gaps = 61/362 (16%)

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
            GQ +R  ++ ++ +  RI LSLK      TD  ++  HF  E+K                
Sbjct: 474  GQEIRLKVIRIDPQEKRINLSLKHF----TDDPWV--HF--EDK---------------- 509

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQA 922
               + +  VI+GKV +  DFG  V  EE      H   + ++   Q     +  G   + 
Sbjct: 510  ---YHVNDVIKGKVTKLTDFGAFVELEEGIEGLVHISEFSWVKKIQKPEELLSIGDETEC 566

Query: 923  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
             IL        V L LK V  + +      R     +  R+ +K        NA   I  
Sbjct: 567  MILGYDLQAGRVSLGLKQVTANPWT-GIEERYPLGTRLTRKVAK------ITNAGAFIEL 619

Query: 983  ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
            E+     +  + H      +S     K P  +F  GQ +   V+++   +   RL +  K
Sbjct: 620  ED----GIDGFLHG---DDISWTKKVKHPGSEFAAGQEIEVMVISIDPENKNIRLGI--K 670

Query: 1043 AISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
             +SE    S       S+Y  GSLV+ E++ +    + ++   G  G IH + + +++ +
Sbjct: 671  QLSEDPWQSFA-----SAYKPGSLVEGEVSSVTDFGIFVRIPGGIEGLIHKSNLPENRED 725

Query: 1103 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS--EIGSKLLFEECD 1160
              + L   ++IG  + A ++    +PD +K      SIK     V   EI   +  EE D
Sbjct: 726  NPDELLKKYQIGDKIKAVVL--ELQPDKQKV---AFSIKDYQKKVQRDEISQYMAAEESD 780

Query: 1161 VS 1162
             S
Sbjct: 781  GS 782



 Score = 47.8 bits (112), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            + G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P  K
Sbjct: 431  ITGEVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGQEIRLKVIRIDPQEK 489

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK           ++     HV D++ G++ ++  +G F+ +E
Sbjct: 490  RINLSLK----HFTDDPWVHFEDKYHVNDVIKGKVTKLTDFGAFVELE 533


>gi|395240782|ref|ZP_10417806.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
 gi|394475564|emb|CCI87783.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
          Length = 400

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FGA +   GGV  L  +  +S   I KP    +VG ++  +V+G+  
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDD 256

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 614
            R    H+ +L   K    S + +AT  L    +  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISL-SIKQTEPSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEVTDGIQGLVH 311

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            SE+      +PS +  VGQ VK ++++  P+ +RI+LS 
Sbjct: 312 VSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSI 351



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 95/439 (21%), Positives = 188/439 (42%), Gaps = 71/439 (16%)

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
            K+    +VG +V  E+ +++  +L +     G  G I   E   D++    +L    K G
Sbjct: 13   KQMQGVEVGDIVDVEVLDVEDGQLDVGVVNAGVEGVITRREFTTDRN---ADLTELVKPG 69

Query: 1115 QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
            +T+ A ++ ++        F + ++     L   E   KL   + D   G  + G V   
Sbjct: 70   ETIKALVLKRAGGDKENGEFFFSVT----RLKEREAFDKL---QKDFEEGNAIEGTVTSS 122

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
                 L+ +         ++ S Y  S+L+ +     IGK +   +  I+  K   RL+L
Sbjct: 123  VRGGLLVDVGTRGFLPASLISSRY-VSDLKPY-----IGKTMKLKITEIDPNKN--RLIL 174

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
               +D + ++  + + D + + +  GD+V G++S++ +   G  + +G  + G VH +E+
Sbjct: 175  -SHKDLVEEEREE-AFDKVASQLVVGDVVEGKVSRLTNF--GAFIDVG-GVDGLVHISEI 229

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
                +  P         D L     GQ VK KV+ I         + LS++ +       
Sbjct: 230  SYKHIDKP--------SDALR---VGQDVKVKVIGIDDD---RHRISLSIKQT------- 268

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
                       P    +    L+   + +G VK++T+ G F+ ++  +   V +S +S+ 
Sbjct: 269  ----------EPSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNK 318

Query: 1415 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE--------------- 1459
            +V+ P     +G+ V  +VL+++P  KR+ +++K ++   AS+S                
Sbjct: 319  HVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKATEENAASESARPRRPRTDNSVNKKY 378

Query: 1460 INNLSN-LHVGDIVIGQIK 1477
            +NN  N   +GDI+  Q+K
Sbjct: 379  MNNDDNGFALGDIIGDQLK 397



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 152/373 (40%), Gaps = 65/373 (17%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R E   D   + + +   G+ +K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGVITRREFTTDRNADLTELVKPGETIKALVLKRAGGDKE-NGEFFFSVTRLKEREAF 102

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGT-IPTEHLADHLEHATVMKSVIK 719
           D L K    G+ + G V       ++V V  +G+   + I + +++D       +K  I 
Sbjct: 103 DKLQKDFEEGNAIEGTVTSSVRGGLLVDVGTRGFLPASLISSRYVSD-------LKPYIG 155

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGC 777
              +  ++  +D   + L+LS K  L+   ++   D  AS +    VV G V  +   G 
Sbjct: 156 KTMKL-KITEIDPNKNRLILSHK-DLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           F+  +G + G    S+         S    VGQ V+  ++ ++ +  RI+LS+KQ+  S 
Sbjct: 214 FID-VGGVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPS- 271

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
               F Q    L E                       G V EG+V    +FG   +F E 
Sbjct: 272 ---PFEQATSSLNE-----------------------GDVFEGEVKSLTNFG---AFVEV 302

Query: 898 SD-VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
           +D + G +   +++   V+        G  ++  +L++  +E+ + LS+K        E 
Sbjct: 303 TDGIQGLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKAT------EE 356

Query: 950 NSNRQAQKKKRKR 962
           N+  ++ + +R R
Sbjct: 357 NAASESARPRRPR 369



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G V  +T+ G FI +   +D  V +S +S  +++ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     S+L+ GD+  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSSLNEGDVFEGEVKSLTNFGAFVEV 302



 Score = 40.8 bits (94), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 127/312 (40%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           E+VKPG+  K    LV +  G   +        T +K + A      +  +     G +T
Sbjct: 64  ELVKPGETIKA---LVLKRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        SS Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SSRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H       ++ G +   +++ +D++   + LS K +  +  +Q     S ++ 
Sbjct: 228 EIS--YKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQA---TSSLNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+K +
Sbjct: 343 SEKRISLSIKAT 354


>gi|320537739|ref|ZP_08037664.1| ribosomal protein S1 [Treponema phagedenis F0421]
 gi|320145418|gb|EFW37109.1| ribosomal protein S1 [Treponema phagedenis F0421]
          Length = 803

 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 156/344 (45%), Gaps = 23/344 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGV 556
           G VV+G+V +  SFGA +   GG   L  +  MS   +++P    K G ++   V  L +
Sbjct: 434 GDVVEGRVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVMRPKDFVKKGEKIKLMVIRLDM 492

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             KRI ++ K       L   + + +  D  I  G +TKI   G F+    G++G A  S
Sbjct: 493 AEKRINLSLKHFTPDPWLEFENKF-QVND--IVKGRVTKITDFGAFIELSEGIEGLAHIS 549

Query: 617 ELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---VKLGSL 672
           E   +    +PS M   G  V+C I+     + R++L  + + T    DD+     +G+ 
Sbjct: 550 EFSWVKKINKPSDMVKSGDEVECMILGYDIQAGRVSLG-LKQVTANPWDDIDTRYPVGTR 608

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQLLVL 730
           ++  V  +T NA     + +G   G + ++ ++    + H   + S ++ G E D +++ 
Sbjct: 609 LTRKVVKIT-NAGAFVELEEGID-GFLHSDDISWTKKIRH---LGSELEVGQEIDCMVIE 663

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
               ++ +      L     +  ++A  I   S V G V +I + G FV+  G + G   
Sbjct: 664 CTPETHRIRLGIKQLTEDPWETFANAYKI--GSFVEGEVTSITDFGIFVKVPGDIEGLIH 721

Query: 791 RSKAVDGQRADLSKT---YYVGQSVRSNILDVNSETGRITLSLK 831
           +   V+G+ A+  +    Y VG  V++ ++D+N    +   S++
Sbjct: 722 KQNLVEGRDANPDEALQKYQVGDKVKAVVIDINPREKKTAFSIR 765



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +   V+ ++   
Sbjct: 436  VVEGRVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVMRPKDFVKKGEKIKLMVIRLDMAE 494

Query: 1441 KRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            KR+ ++LK  T D     +++        V DIV G++ ++  +G FI +
Sbjct: 495  KRINLSLKHFTPDPWLEFENK------FQVNDIVKGRVTKITDFGAFIEL 538


>gi|89094100|ref|ZP_01167043.1| 30S ribosomal protein S1 [Neptuniibacter caesariensis]
 gi|89081575|gb|EAR60804.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
          Length = 563

 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 148/356 (41%), Gaps = 38/356 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K G+ VKG V  +  +GA +   GGV  L  +  ++   +  P +  KVG E+  +V
Sbjct: 187 ANLKEGLKVKGIVKNITDYGAFIDL-GGVDGLLHITDIAWKRVKHPSEALKVGEEIDVQV 245

Query: 554 LGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  +++  K+        ++S+Y            +T +  +GCF    NG++G
Sbjct: 246 LRFDKERNRVSLGMKQLSEDPWTQLISNYTVGAK---AKAKVTNLTDYGCFAEIENGIEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVK 668
               SE+   +    PS +  VG +V   ++      RRI+L     KP   +E      
Sbjct: 303 LIHVSEMDWTNKNVHPSKVVQVGDMVDVMLLDIDMERRRISLGMKQCKPNPWNEFSSKFD 362

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 727
            G  ++G +  +T   V +     G   G     HL+D L      + V+K   + D++ 
Sbjct: 363 KGDKITGSIRSITDFGVFI-----GLDGGIDGLVHLSD-LSWEQPGEEVVKSYKKGDEVE 416

Query: 728 ---LVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFV 779
              L +D E   + L  K        QL SD      S     S+V G V N+ +    V
Sbjct: 417 AVVLSVDAERERIALGIK--------QLDSDPFVNFTSVNAKGSIVKGQVSNVTDKALSV 468

Query: 780 RFLGRLTGFAPRSKAVDGQRA---DLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
                  G     K  D  R    +LS+ + VG  V + I +++     ITLS+KQ
Sbjct: 469 TLA---EGVEASLKIADVSRDRIDNLSERFTVGDEVEAVISNIDRRNRVITLSIKQ 521



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 184/471 (39%), Gaps = 65/471 (13%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++ PG +V G V+A++    IV    G+K+   +P  S+F          VG+E+   + 
Sbjct: 17  EMAPGAIVSGTVVAIEDDYVIVN--AGLKSEGIIPK-SQFLDENGDLTIDVGSEVKVALE 73

Query: 555 GVKSKRITVTHKKTLVKSKLAILS-SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
            V+    T    +   K   A +    A   D ++T     K+   G F    N +  F 
Sbjct: 74  AVEDGFGTTQLSRDKAKRAEAWIELEKAYEADEIVTGNITGKV--RGGFTVNVNTIHAFL 131

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLV 667
           P S + + P  + S + +  Q ++ +++      ++I  SRR  L       R      +
Sbjct: 132 PGSLVDVRPLRDTSHLEN--QELEFKLVKLDAKRNNIVVSRRAVLEAAYSEEREKLLANL 189

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD- 725
           K G  V G+V  +T     + +   G   G +    +A   ++H +     +K G E D 
Sbjct: 190 KEGLKVKGIVKNITDYGAFIDL---GGVDGLLHITDIAWKRVKHPS---EALKVGEEIDV 243

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           Q+L  D E + + L  K    +   QL S+ +     +     V N+ + GCF      +
Sbjct: 244 QVLRFDKERNRVSLGMKQLSEDPWTQLISNYT---VGAKAKAKVTNLTDYGCFAEIENGI 300

Query: 786 TGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            G    S+ +D    ++  SK   VG  V   +LD++ E  RI+L +KQ C  +    F 
Sbjct: 301 EGLIHVSE-MDWTNKNVHPSKVVQVGDMVDVMLLDIDMERRRISLGMKQ-CKPNPWNEF- 357

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
                         SSK           F  G  I G +    DFGV +  +   D  G 
Sbjct: 358 --------------SSK-----------FDKGDKITGSIRSITDFGVFIGLDGGID--GL 390

Query: 904 I-----THHQLAGATVES---GSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
           +     +  Q     V+S   G  ++A +L V      + L +K +  D F
Sbjct: 391 VHLSDLSWEQPGEEVVKSYKKGDEVEAVVLSVDAERERIALGIKQLDSDPF 441



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            + +L   + V+G VKN+T  G FI L   +D  + +++++   V+ P +   +G+ +  +
Sbjct: 186  LANLKEGLKVKGIVKNITDYGAFIDLG-GVDGLLHITDIAWKRVKHPSEALKVGEEIDVQ 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            VL  +    RV + +K       +Q     +SN  VG     ++  +  YG F  IEN
Sbjct: 245  VLRFDKERNRVSLGMKQLSEDPWTQL----ISNYTVGAKAKAKVTNLTDYGCFAEIEN 298


>gi|336315849|ref|ZP_08570755.1| ribosomal protein S1 [Rheinheimera sp. A13L]
 gi|335879839|gb|EGM77732.1| ribosomal protein S1 [Rheinheimera sp. A13L]
          Length = 558

 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 159/385 (41%), Gaps = 43/385 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLEEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIPVKVL 246

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               + +R+++  K+       AI S Y E     IT G +T +  +GCFV    GV+G 
Sbjct: 247 KFDREKQRVSLGLKQMGEDPWAAIASRYPEGA--RIT-GRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L          E+       
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  VSG +  +T   + +     G   G     HL+D   ++T   +V   K G E    
Sbjct: 364 GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
           +L +D E   + L  K        QL  D    ++  N   ++V G V  +   G  V  
Sbjct: 419 VLQVDPERERISLGIK--------QLDEDPFNGYLADNKKGAIVKGNVTAVDAKGATVML 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            G + G+   S     +  D +    VG+ V + ++ V+ +   I+LS+K          
Sbjct: 471 EGGVEGYVRVSDIARERIEDATTVLKVGEEVEARLMGVDRKNRVISLSIKAK-------- 522

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSEL 866
                F  EEK AM    K + ++ 
Sbjct: 523 -----FEAEEKEAMDTIKKQDDTDF 542



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 137/346 (39%), Gaps = 33/346 (9%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L+ ++EGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LQNLEEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEIPV 243

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            V   DR ++ V L        K + +D           G  ++ RV ++ + G  +   
Sbjct: 244 KVLKFDREKQRVSLGL------KQMGEDPWAAIASRYPEGARITGRVTNLTDYGCFVEIE 297

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLH 397
               G V +  +  T    +     N    V   +L +D   R + L L     NP+   
Sbjct: 298 EGVEGLVHVSEMDWTNKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQCKANPWEEF 357

Query: 398 ----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               N+      K+  I D    + +D G+  L+ +          ++ +   E+ VR+ 
Sbjct: 358 AKGFNKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNSTGEDAVREF 409

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
            KK  E   V +++   R    L    L    F G +   +D K G +VKG V AVD+ G
Sbjct: 410 -KKGDEVHAVVLQVDPERERISLGIKQLDEDPFNGYL---ADNKKGAIVKGNVTAVDAKG 465

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           A V   GGV+    +  ++   I       KVG E+  R++GV  K
Sbjct: 466 ATVMLEGGVEGYVRVSDIARERIEDATTVLKVGEEVEARLMGVDRK 511



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 99/476 (20%), Positives = 186/476 (39%), Gaps = 59/476 (12%)

Query: 489 LVFTHS----DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 544
           L+F  S    + +PG +VKG ++A+     +V    G+K+   +P + +F+ +    +  
Sbjct: 7   LLFEESLKTIETRPGSIVKGTIVAIHK--DVVLVDAGLKSEAAIP-VEQFKNLAGEIEVS 63

Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
           VG  +   +  V+         +   K   + +       D++   G IT   K G F  
Sbjct: 64  VGDIIDVALDAVEDGFGETLLSREKAKRHESWVRLEKACEDKVTVIGIITGKVK-GGFTV 122

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTR 660
             +G++ F P S + + P  +   + H     +V+K  +  +++  SRR  +       R
Sbjct: 123 EVDGIRAFLPGSLVDVRPVRDTLHLEHKELEFKVIKLDQKRNNVVVSRRAVIESESSAER 182

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
            +    ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++ 
Sbjct: 183 DTLLQNLEEGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVN 236

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            G E   ++L  D E   + L  K           + AS     + + G V N+ + GCF
Sbjct: 237 VGDEIPVKVLKFDREKQRVSLGLKQM---GEDPWAAIASRYPEGARITGRVTNLTDYGCF 293

Query: 779 VRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           V     + G    S+ +D    ++  SK   +G SV   +L+++ E  RI+L LKQ C +
Sbjct: 294 VEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQ-CKA 351

Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
           +    F +                          GF  G  + GK+    DFG+ +  + 
Sbjct: 352 NPWEEFAK--------------------------GFNKGDRVSGKIKSITDFGIFIGLDG 385

Query: 897 ------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
                 H     + +  + A    + G  + A +L V      + L +K +  D F
Sbjct: 386 GIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQLDEDPF 441



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 58/332 (17%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A++    PSE+       ++G  +   
Sbjct: 192  GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEIPVK 244

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK+ + L L+   +   D    I+     +   EG  + GR++ +     G  V
Sbjct: 245  VLKFDREKQRVSLGLKQMGE---DPWAAIA-----SRYPEGARITGRVTNLTDY--GCFV 294

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VLEI    R    
Sbjct: 295  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNLGDSVEVMVLEIDEERR---- 340

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL G+    ++        P +   K    +    V G +K++T  G FI L 
Sbjct: 341  -----RISL-GLKQCKAN--------PWEEFAK--GFNKGDRVSGKIKSITDFGIFIGLD 384

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +   E   +EF  G  V   VL V+P  +R+ + +K  D     + 
Sbjct: 385  GGIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERERISLGIKQLD-----ED 439

Query: 1459 EINN-LSNLHVGDIVIGQIKRVESYGLFITIE 1489
              N  L++   G IV G +  V++ G  + +E
Sbjct: 440  PFNGYLADNKKGAIVKGNVTAVDAKGATVMLE 471


>gi|385813938|ref|YP_005850331.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
 gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
          Length = 403

 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FG  +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGGFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 34/197 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD++ G++S+ L+  GG +   G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSR-LTNFGGFIDVGG--VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1440 SKRVEVTLKTSDSRTAS 1456
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 36/320 (11%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREKAFDKVASQLVVGDVIEGKVSRLTNFGGFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLK--QSCCSSTD 839
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362



 Score = 41.2 bits (95), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGGFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     ++L+ GD+  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDVFEGEVKSLTNFGAFVEV 302


>gi|126641617|ref|YP_001084601.1| 30S ribosomal protein S1 [Acinetobacter baumannii ATCC 17978]
 gi|184157939|ref|YP_001846278.1| 30S ribosomal protein S1 [Acinetobacter baumannii ACICU]
 gi|183209533|gb|ACC56931.1| putative 30S ribosomal protein S1 [Acinetobacter baumannii ACICU]
          Length = 479

 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 109 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 167

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 168 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 224

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 225 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKS 282

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G + G     HL+D    E         K G   
Sbjct: 283 HEKGEKVSGTIKSITDFGIFI-----GLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 337

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 338 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDARGAT 389

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 390 VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 442



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E    +H   + G  V G + ++  FG  +   GG+  L  L  +S  E  +   
Sbjct: 272 RANPWEEFAKSH---EKGEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAI 328

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 329 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 384

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 385 ARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 444



 Score = 43.9 bits (102), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 147/356 (41%), Gaps = 37/356 (10%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L  ++EG  +T  +K++ D+G  +  G     G L   ++A    ++    V+ G  +  
Sbjct: 108 LAQLEEGQTVTGTIKNLTDYGAFVDLG--GIDGLLHITDMAWKRIKHPSEVVEVGQEVTV 165

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            V   DR R  V L        K + +D     +     G +V  RV ++ + G      
Sbjct: 166 KVLKFDRERNRVSLG------LKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIA 219

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
               G V +  + +T    +         +V+  +L VD   R + L +       RA P
Sbjct: 220 EGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIK----QTRANP 275

Query: 403 ------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
                 SH K   +    K +  D G+ + L+     +   + ++ ++  EE +R    +
Sbjct: 276 WEEFAKSHEKGEKVSGTIKSI-TDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIR----R 330

Query: 457 YKEGSCVRVRILGFRHLEG--LATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
           YK+G  V   IL     EG  ++ GI  L +  F   +  +   + G +VKG V AVD+ 
Sbjct: 331 YKKGDTVEAVILSV-DAEGNRISLGIKQLNSDPFNDFLAAN---ERGALVKGTVTAVDAR 386

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
           GA V+    V+A      ++   +    K  +VG E+  +++ V  KS+ I ++ K
Sbjct: 387 GATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 442



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 81/413 (19%), Positives = 167/413 (40%), Gaps = 72/413 (17%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 75   EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 132

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 133  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQ--------- 183

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    + S             +  GS+++ +V    D+G      E   V 
Sbjct: 184  ------LGEDPWLAIMSR------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 223

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE-ANSN 952
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E A S+
Sbjct: 224  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSH 283

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNTQ-K 1009
             + +K     ++  D G+   +N  ++                  G   +SD  +N Q +
Sbjct: 284  EKGEKVSGTIKSITDFGIFIGLNGGID------------------GLVHLSDISWNEQGE 325

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQA 1069
               +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+ 
Sbjct: 326  EAIRRYKKGDTVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANER-----GALVKG 378

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +T +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 379  TVTAVDARGATVKLADEVEATLKASEINRDR---VEDATKFLEVGQEVEAKII 428


>gi|335043349|ref|ZP_08536376.1| ribosomal protein S1 [Methylophaga aminisulfidivorans MP]
 gi|333789963|gb|EGL55845.1| ribosomal protein S1 [Methylophaga aminisulfidivorans MP]
          Length = 557

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VVKG V  +  +GA V   GG+  L  +  M+   +  P +   +G E+  +VL 
Sbjct: 189 LEEGKVVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSEVVAIGDEIEVQVLK 247

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
                +R+++  K+        I   Y  +T R+  HG +T I  +GCFV   +GV+G  
Sbjct: 248 FDKDRERVSLGLKQMGDDPWKDIARRYPNST-RI--HGKVTNIADYGCFVEIEDGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KLG 670
             SE+   +    PS +  +G  V+  ++      RRI+L      T   E+  +    G
Sbjct: 305 HMSEMDWTNKNVHPSKLVQLGDEVEVMVLDIDAERRRISLGIKQCQTNPWEEFAMTHNKG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQ-L 727
             VSG +  +T   + +     G   G     HL+D    E    +    K G + +  +
Sbjct: 365 DKVSGAIKSITDFGIFI-----GLDGGIDGLIHLSDISWEEDNEELIRDFKKGDDVEAVV 419

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHI--HP-NSVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL  D  ++++  HP  S+V+G V  +   G  +   
Sbjct: 420 LAIDPERERISLGIK--------QLQDDPFSAYLAEHPRGSIVNGKVIAVDARGATIELA 471

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             + G+   +     +  D SK   VG  V +    ++ +   +TLS+K
Sbjct: 472 EGVEGYVRAADIARERVEDASKILAVGDDVEAKFTGMSRKDRTLTLSIK 520



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 142/357 (39%), Gaps = 45/357 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA------ENSGIDVKPGLLL 280
           LET++EG V+   VK++ D+G  +  G     G L   ++A       +  + +   + +
Sbjct: 186 LETLEEGKVVKGIVKNLTDYGAFVDLG--GIDGLLHITDMAWKRVKHPSEVVAIGDEIEV 243

Query: 281 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
           Q +    DR R  + L    D   K + +     +         +  +V +I + G  + 
Sbjct: 244 QVLKFDKDRERVSLGLKQMGDDPWKDIARRYPNST--------RIHGKVTNIADYGCFVE 295

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY- 394
                 G V +  +  T    +         +V   +L +D   R + L +     NP+ 
Sbjct: 296 IEDGVEGLVHMSEMDWTNKNVHPSKLVQLGDEVEVMVLDIDAERRRISLGIKQCQTNPWE 355

Query: 395 ---LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEV 450
              + HN+       +  I D    + +D G+  L             + +SD++ EE+ 
Sbjct: 356 EFAMTHNKGDKVSGAIKSITDFGIFIGLDGGIDGL-------------IHLSDISWEEDN 402

Query: 451 RKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVI 507
            +L + +K+G  V   +L      E ++ GI  L+   F   +  H     G +V GKVI
Sbjct: 403 EELIRDFKKGDDVEAVVLAIDPERERISLGIKQLQDDPFSAYLAEHP---RGSIVNGKVI 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           AVD+ GA ++   GV+       ++   +    K   VG ++  +  G+  K  T+T
Sbjct: 460 AVDARGATIELAEGVEGYVRAADIARERVEDASKILAVGDDVEAKFTGMSRKDRTLT 516



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 153/366 (41%), Gaps = 37/366 (10%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-----EI-VKPGKKFKVGAEL 549
           ++PG +V G V+ V     +V    G+K+   +P +SEF     E+ V  G    V  E 
Sbjct: 18  MQPGKIVTGTVVNVGP--DVVMVNAGLKSEGAIP-VSEFLNENGEVTVSVGDLVDVSLES 74

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           +    G       ++  K         L    EA + ++  G I+   K G  V   N +
Sbjct: 75  LEDGFGATQ----LSRDKAKAAEAWTKLEHAFEAGETVM--GIISGKVKGGFTVDLEN-I 127

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDD 665
           + F P S + + P  + + + +     K     R  ++I  SRR  +       R +  +
Sbjct: 128 RAFLPGSLVDVRPIRDTTHLENKELEFKLIKLDRPRNNIVVSRRAIMEEENSAEREALLE 187

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 724
            ++ G +V G+V  +T     V +   G   G +    +A   ++H +    V+  G E 
Sbjct: 188 TLEEGKVVKGIVKNLTDYGAFVDL---GGIDGLLHITDMAWKRVKHPS---EVVAIGDEI 241

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV-VHGYVCNIIETGCFVRFL 782
           + Q+L  D +   + L  K            D +  +PNS  +HG V NI + GCFV   
Sbjct: 242 EVQVLKFDKDRERVSLGLK----QMGDDPWKDIARRYPNSTRIHGKVTNIADYGCFVEIE 297

Query: 783 GRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
             + G    S+ +D    ++  SK   +G  V   +LD+++E  RI+L +KQ C ++   
Sbjct: 298 DGVEGLVHMSE-MDWTNKNVHPSKLVQLGDEVEVMVLDIDAERRRISLGIKQ-CQTNPWE 355

Query: 841 SFMQEH 846
            F   H
Sbjct: 356 EFAMTH 361



 Score = 41.2 bits (95), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L    +V+G VKN+T  G F+ L   +D  + +++++   V+ P +   IG  +  +
Sbjct: 186  LETLEEGKVVKGIVKNLTDYGAFVDLG-GIDGLLHITDMAWKRVKHPSEVVAIGDEIEVQ 244

Query: 1433 VLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            VL  +   +RV + LK    D          N + +H      G++  +  YG F+ IE+
Sbjct: 245  VLKFDKDRERVSLGLKQMGDDPWKDIARRYPNSTRIH------GKVTNIADYGCFVEIED 298


>gi|317059815|ref|ZP_07924300.1| LytB protein [Fusobacterium sp. 3_1_5R]
 gi|313685491|gb|EFS22326.1| LytB protein [Fusobacterium sp. 3_1_5R]
          Length = 545

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 142/526 (26%), Positives = 224/526 (42%), Gaps = 88/526 (16%)

Query: 187 FHVGQLVSCIV---LQLDDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
           ++VG  V  ++   L+ DDD++ +   +++I L      +      +TV  G +    VK
Sbjct: 64  YNVGDQVEVVLVGLLEADDDQEVLIASRKRIDLEDNWKHIEDSYENKTVLSGRI----VK 119

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            I+  GYI+   L  + GFLP N+L+E   I+ K G  + G  ++ID   K +   S  D
Sbjct: 120 KIK-GGYIVEAAL--YQGFLP-NSLSE---INEKDGEAMVG--KNIDVIVKDIKQDS-RD 169

Query: 302 TVSKCVT---KDL----KGISIDLLVPGMMVSTRVQSILENG--VMLSFLTYFTGTVDIF 352
             SK +T   KD+    +G     L  G +V+  V  I++ G  VM+  L  F       
Sbjct: 170 KRSKKITFSKKDITLMKEGEEFAKLTVGDVVTCTVSGIMDFGLSVMIDHLRGF------I 223

Query: 353 HLQNTFPTTNWK------NDYNQHKKVNARILFVDPTSRAVGL-----TLNPYLLHNRAP 401
           H+       +WK      + Y   + V A+IL +D   + + L     T NP+ L   A 
Sbjct: 224 HISEV----SWKRLDDLRDLYTVGQTVEAKILSLDEEKKNIKLSIKQLTTNPWDLSKDAF 279

Query: 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR-KLEKKYKEG 460
               +V     + KV RV    G  +++          V ISD A  + R  +E+  K G
Sbjct: 280 HEGDEV-----EGKVTRV-LAYGAFVELTE---GVEGLVHISDFAWNKKRINMEEYAKVG 330

Query: 461 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK-----VIAVDSFGAI 515
             V+V+IL F + EG    +     F+ LV    DV      +GK     ++ +  FG  
Sbjct: 331 ETVKVKILEF-NPEGRKLKL----GFKQLVENPWDVAEEKFAEGKELTATILDIKPFGLF 385

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKK---FKVGAELVFRVL--GVKSKRITVTHKKTLV 570
            +   GV       H S+F    PG +   ++VG  + F+VL   V+ K+I  + K  L 
Sbjct: 386 AEIESGVDVFV---HSSDFGW--PGDEPANYQVGDSISFKVLELNVEDKKIKGSIK-ALK 439

Query: 571 KSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           KS     +  Y   T        I  I   G FV    G+ GF P      D   +    
Sbjct: 440 KSPWDKAMEEYKVGT---TVEKKIKNIMDFGLFVELSKGIDGFIPTQFASKDFVKDLKDK 496

Query: 630 YHVGQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGS 671
           + +GQVVK +I+     +++I LS     + +  R  +D L K G+
Sbjct: 497 FEIGQVVKAQIVEINQETQKIKLSIKKIELEEQKREDQDLLAKYGT 542



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 27/254 (10%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMSSIPASR 648
            G +T++  +G FV    GV+G    S+   +        Y  VG+ VK +I+   P  R
Sbjct: 286 EGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEGR 345

Query: 649 RINLSF---MMKPTRVSEDDLVKLGSLVSGVVDV-------VTPNAVVVYVIAKGYSKGT 698
           ++ L F   +  P  V+E+   +   L + ++D+          + V V+V +  +    
Sbjct: 346 KLKLGFKQLVENPWDVAEEKFAEGKELTATILDIKPFGLFAEIESGVDVFVHSSDFG--- 402

Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            P +  A++    ++   V+       +L V D +    + + K S  + A +       
Sbjct: 403 WPGDEPANYQVGDSISFKVL-------ELNVEDKKIKGSIKALKKSPWDKAME------E 449

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
               + V   + NI++ G FV     + GF P   A      DL   + +GQ V++ I++
Sbjct: 450 YKVGTTVEKKIKNIMDFGLFVELSKGIDGFIPTQFASKDFVKDLKDKFEIGQVVKAQIVE 509

Query: 819 VNSETGRITLSLKQ 832
           +N ET +I LS+K+
Sbjct: 510 INQETQKIKLSIKK 523



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 145/333 (43%), Gaps = 51/333 (15%)

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
            E   +++G  VT  V  +  ++ L  +  HL+   FI  S      L + +  + +G+ V
Sbjct: 190  EFAKLTVGDVVTCTVSGI-MDFGLSVMIDHLRG--FIHISEVSWKRLDDLRDLYTVGQTV 246

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               +LS+++EKK ++L ++     ++    D+S D      HEGD V G+++++L+   G
Sbjct: 247  EAKILSLDEEKKNIKLSIKQ----LTTNPWDLSKDAF----HEGDEVEGKVTRVLA--YG 296

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
              V++   + G VH ++            +++ + +       G+ VK K+LE +   R 
Sbjct: 297  AFVELTEGVEGLVHISDF----------AWNKKRINMEEYAKVGETVKVKILEFNPEGR- 345

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL-EKIEDLSPNMIVQGYVKNVTSKGCF 1395
               ++L  +  ++     N  D++ +    GK L   I D+ P              G F
Sbjct: 346  --KLKLGFKQLVE-----NPWDVAEEKFAEGKELTATILDIKPF-------------GLF 385

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
              +   +D  V  S+   G+       + +G  ++ +VL +    K+++ ++K       
Sbjct: 386  AEIESGVDVFVHSSDF--GWPGDEPANYQVGDSISFKVLELNVEDKKIKGSIKALKKSPW 443

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             ++    +    VG  V  +IK +  +GLF+ +
Sbjct: 444  DKA----MEEYKVGTTVEKKIKNIMDFGLFVEL 472


>gi|94266273|ref|ZP_01289978.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
 gi|93453124|gb|EAT03595.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
          Length = 530

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 155/367 (42%), Gaps = 36/367 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V+ G V  +  +G  V   GG+  LC +  +S   +  P K FKVG ++  +VL 
Sbjct: 158 LEEGQVLTGTVTNITDYGVFVDL-GGMDGLCHITDLSWGRVSHPSKMFKVGDDIQVKVLK 216

Query: 556 VKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +   V+     +KS     I   Y          G +  I  +G FV    GV+G  
Sbjct: 217 YDQENDKVSLGVKQLKSDPWETIQQRYPVGAK---VPGKVVSITDYGAFVELEEGVEGLV 273

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK---- 668
             SE+        PS +  VG  V+  +++  P ++RI+L   MK  + +  D+V     
Sbjct: 274 HISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKRISLG--MKQLQPNPWDMVAENYP 331

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
            GS++ G +  +T   + +     G  +G     H++D     +  + +  PG ++    
Sbjct: 332 AGSIIEGKIKNITDFGIFI-----GIEEGIDGLIHVSD----LSWTERIKHPGEKYAKGE 382

Query: 726 --QLLVLDNESSNLLLSAKYSL-INSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVR 780
             Q +VL  +  N     ++SL I   Q  P +A+       + + G + N+ + G FV 
Sbjct: 383 TIQAVVLKIDKEN----ERFSLGIKQLQPDPWEAAVEKYAIGTKLEGKITNVTDFGVFVE 438

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+    +       Y VG ++ + +++V+++  +I LS+K    S  D 
Sbjct: 439 LEEGIEGLIHVSELSKEKVETPVGLYNVGDTIEARVINVSAKDRKIGLSIK--ALSGEDE 496

Query: 841 SFMQEHF 847
               E F
Sbjct: 497 EARLEDF 503



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 97/458 (21%), Positives = 180/458 (39%), Gaps = 98/458 (21%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKSKRITVT-HKKTLVKSKLAIL 577
           GV A  P   +     ++P +     +G    F++L    +R  V   ++ +++     L
Sbjct: 95  GVPAFLPYSQID----LRPVRDLDALIGESFDFKILKFNRRRNNVVISRRAIMEEARQQL 150

Query: 578 SSYAEAT--DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
            +    T  +  +  G +T I  +G FV    G+ G    ++L       PS M+ VG  
Sbjct: 151 RNEMRGTLEEGQVLTGTVTNITDYGVFVDL-GGMDGLCHITDLSWGRVSHPSKMFKVGDD 209

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
           ++ +++     + +++L      +   E       +G+ V G V  +T     V +    
Sbjct: 210 IQVKVLKYDQENDKVSLGVKQLKSDPWETIQQRYPVGAKVPGKVVSITDYGAFVEL---- 265

Query: 694 YSKGTIPTEHLADHLEHATVMK---------SVIKPGYEFD-QLLVLDNESSNLLLSAKY 743
                   E   + L H + M           ++  G E +  +L +D E+  + L  K 
Sbjct: 266 --------EEGVEGLVHISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKRISLGMK- 316

Query: 744 SLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG--QR 799
                 Q  P D  A +    S++ G + NI + G F+             + +DG    
Sbjct: 317 ----QLQPNPWDMVAENYPAGSIIEGKIKNITDFGIFIGI----------EEGIDGLIHV 362

Query: 800 ADLSKT---------YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
           +DLS T         Y  G+++++ +L ++ E  R +L +KQ      +A+         
Sbjct: 363 SDLSWTERIKHPGEKYAKGETIQAVVLKIDKENERFSLGIKQLQPDPWEAA--------- 413

Query: 851 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 910
                             VE + IG+ +EGK+    DFGV V  EE   + G I   +L+
Sbjct: 414 ------------------VEKYAIGTKLEGKITNVTDFGVFVELEEG--IEGLIHVSELS 453

Query: 911 GATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
              VE+       G  I+A +++V+  +R + LS+K +
Sbjct: 454 KEKVETPVGLYNVGDTIEARVINVSAKDRKIGLSIKAL 491



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/422 (19%), Positives = 176/422 (41%), Gaps = 74/422 (17%)

Query: 721  GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
            G  FD ++L  +   +N+++S +  +  + QQL ++    +    V+ G V NI + G F
Sbjct: 118  GESFDFKILKFNRRRNNVVISRRAIMEEARQQLRNEMRGTLEEGQVLTGTVTNITDYGVF 177

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            V  LG + G    +    G+ +  SK + VG  ++  +L  + E  +++L +KQ    S 
Sbjct: 178  VD-LGGMDGLCHITDLSWGRVSHPSKMFKVGDDIQVKVLKYDQENDKVSLGVKQ--LKSD 234

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
                +Q+ +                          +G+ + GKV    D+G  V  EE  
Sbjct: 235  PWETIQQRYP-------------------------VGAKVPGKVVSITDYGAFVELEEG- 268

Query: 899  DVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V G +   +++ +         V  G  ++ ++L+V    + + L +K +  + +    
Sbjct: 269  -VEGLVHISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKRISLGMKQLQPNPWDMVA 327

Query: 951  SNRQA-----QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY 1005
             N  A      K K   +    +G+ + ++ ++ +                   + +S  
Sbjct: 328  ENYPAGSIIEGKIKNITDFGIFIGIEEGIDGLIHV-------------------SDLSWT 368

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
               K P +++  G+++ A V+ +   +    L      I + +    + A +K  Y +G+
Sbjct: 369  ERIKHPGEKYAKGETIQAVVLKIDKENERFSL-----GIKQLQPDPWEAAVEK--YAIGT 421

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
             ++ +IT +    + ++   G  G IH++E++ +K   VE     + +G T+ AR+I  S
Sbjct: 422  KLEGKITNVTDFGVFVELEEGIEGLIHVSELSKEK---VETPVGLYNVGDTIEARVINVS 478

Query: 1126 NK 1127
             K
Sbjct: 479  AK 480



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 19/223 (8%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKP 498
           I+D++   V    K +K G  ++V++L + +  + ++ G+  LK+  +E +         
Sbjct: 189 ITDLSWGRVSHPSKMFKVGDDIQVKVLKYDQENDKVSLGVKQLKSDPWETI---QQRYPV 245

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVL 554
           G  V GKV+++  +GA V+   GV+ L    H+SE    K    P K   VG E+   VL
Sbjct: 246 GAKVPGKVVSITDYGAFVELEEGVEGLV---HISEMSWSKKSRHPSKIVTVGDEVEVSVL 302

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  ++KRI++  K+        +  +Y   +   I  G I  I   G F+    G+ G 
Sbjct: 303 NVDPEAKRISLGMKQLQPNPWDMVAENYPAGS---IIEGKIKNITDFGIFIGIEEGIDGL 359

Query: 613 APRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              S+L      + P   Y  G+ ++  ++     + R +L  
Sbjct: 360 IHVSDLSWTERIKHPGEKYAKGETIQAVVLKIDKENERFSLGI 402



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 147/348 (42%), Gaps = 41/348 (11%)

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 288
           T++EG VLT  V +I D+G  +  G     G     +L+   G    P  + +      D
Sbjct: 157 TLEEGQVLTGTVTNITDYGVFVDLG--GMDGLCHITDLS--WGRVSHPSKMFK---VGDD 209

Query: 289 RTRKVVYLSSDPDTVSKCVTKDLKGI---SIDLLVP-GMMVSTRVQSILENGVMLSFLTY 344
              KV+    + D VS  V K LK     +I    P G  V  +V SI + G  +     
Sbjct: 210 IQVKVLKYDQENDKVSLGV-KQLKSDPWETIQQRYPVGAKVPGKVVSITDYGAFVELEEG 268

Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHN 398
             G V I  +  +  + +         +V   +L VDP ++ + L +     NP+ ++  
Sbjct: 269 VEGLVHISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKRISLGMKQLQPNPWDMVAE 328

Query: 399 RAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLE 454
             P   +   K+ +I D    + ++ G+  L             + +SD++  E ++   
Sbjct: 329 NYPAGSIIEGKIKNITDFGIFIGIEEGIDGL-------------IHVSDLSWTERIKHPG 375

Query: 455 KKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
           +KY +G  ++  +L   +  E  + GI  L+   +E  V  ++    G  ++GK+  V  
Sbjct: 376 EKYAKGETIQAVVLKIDKENERFSLGIKQLQPDPWEAAVEKYA---IGTKLEGKITNVTD 432

Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           FG  V+   G++ L  +  +S+ ++  P   + VG  +  RV+ V +K
Sbjct: 433 FGVFVELEEGIEGLIHVSELSKEKVETPVGLYNVGDTIEARVINVSAK 480



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G V ++T  G F+ L   ++  V +S +S       P K   +G  V   VL+V+P +
Sbjct: 249  VPGKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEA 308

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            KR+ + +K                N   G I+ G+IK +  +G+FI IE
Sbjct: 309  KRISLGMKQLQPNPWDMV----AENYPAGSIIEGKIKNITDFGIFIGIE 353



 Score = 40.4 bits (93), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGR 1432
            E+     I++G +KN+T  G FI +   +D  + +S+LS    ++ P +++  G+ +   
Sbjct: 328  ENYPAGSIIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPGEKYAKGETIQAV 387

Query: 1433 VLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL ++  ++R  + +K    D   A+      +    +G  + G+I  V  +G+F+ +E
Sbjct: 388  VLKIDKENERFSLGIKQLQPDPWEAA------VEKYAIGTKLEGKITNVTDFGVFVELE 440


>gi|389706193|ref|ZP_10186283.1| 30S ribosomal protein S1 [Acinetobacter sp. HA]
 gi|388610670|gb|EIM39785.1| 30S ribosomal protein S1 [Acinetobacter sp. HA]
          Length = 558

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKN 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D    E         K G   
Sbjct: 361 HDKGEKVSGTIKSITDFGIFI-----GLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 11/198 (5%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E     H     G  V G + ++  FG  +  PGG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKNHD---KGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 AKGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522

Query: 658 PTRVSEDDLVKLGSLVSG 675
                ++ +  L +  +G
Sbjct: 523 DEAEEKEAVANLKTAAAG 540



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 80/410 (19%), Positives = 164/410 (40%), Gaps = 66/410 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    + S             +  GS+++ +V    D+G      E   V 
Sbjct: 262  ------LGEDPWLAIMSR------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E   N 
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKNH 361

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQ 1012
               +K           V  T+ +I +      + + LP     + + S   +N Q +   
Sbjct: 362  DKGEK-----------VSGTIKSITDF----GIFIGLPGGIDGLVHLSDISWNEQGEEAI 406

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 1072
            +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+  +T
Sbjct: 407  RRYKKGDTVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANER-----GALVKGTVT 459

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 460  AVDAKGATVKLADEVEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506


>gi|320352187|ref|YP_004193526.1| 30S ribosomal protein S1 [Desulfobulbus propionicus DSM 2032]
 gi|320120689|gb|ADW16235.1| SSU ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
          Length = 577

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 191/474 (40%), Gaps = 69/474 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V  G V+ + S   ++      ++  PL   SEF    P ++ K+G +    +   K 
Sbjct: 38  GEVALGTVVGLSSDAVLIDVGDKAESFIPL---SEFRHEDPEREIKIGDQFEVFIEKRKD 94

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           +   +  ++  +  K+    +  +  D  I  G I    K G  V    GV  F P S++
Sbjct: 95  EGGLLLSREKAIAIKVWEQIAKIQEEDGTI-EGRIDNRVKGGMSVDI--GVPAFLPYSQI 151

Query: 619 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
            L P  +  S+  +GQ  + +I+      +++  SRR  L       R      ++ G +
Sbjct: 152 DLRPVKDLDSL--IGQTFEFKILKFNRKRNNVVISRRAILENQRTALREQMRTSLQEGQI 209

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFD-QL 727
           + G +  +T   + + +   G   G     H+ D     + H + + +V   G E + ++
Sbjct: 210 IRGAITNITDYGLFIDL---GGMDGLC---HITDLSWGRVSHPSKLYTV---GEEIEVKI 260

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           L  D  S  + L  K    +  +++P   +   P S V G V +I + G FV     + G
Sbjct: 261 LKYDKNSDRVSLGVKQLKSDPWERVPQQYA---PGSRVKGKVVSITDYGVFVELEEGVEG 317

Query: 788 FAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
               S+    ++    SK   VG+ +   +L V +ET RI+L +KQ              
Sbjct: 318 LVHISEMSWSKKPRHPSKIVGVGEEIEVQVLKVEAETKRISLGMKQ-------------- 363

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                    LQ +  +  E    E + +GSVIEGK+    DFG+ +  EE  D  G I  
Sbjct: 364 ---------LQPNPWDVVE----ESYPVGSVIEGKIKNITDFGIFIGIEEGID--GLIHV 408

Query: 907 HQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
             L+              G  IQA +L + K      L +K +  D ++ A+SN
Sbjct: 409 SDLSWTERIKHPSEKYSKGETIQAVVLKIDKENERFSLGVKQLEPDPWQAASSN 462



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/423 (19%), Positives = 170/423 (40%), Gaps = 74/423 (17%)

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNI 772
            + S+I   +EF ++L  + + +N+++S +  L N    L     + +    ++ G + NI
Sbjct: 159  LDSLIGQTFEF-KILKFNRKRNNVVISRRAILENQRTALREQMRTSLQEGQIIRGAITNI 217

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             + G F+  LG + G    +    G+ +  SK Y VG+ +   IL  +  + R++L +KQ
Sbjct: 218  TDYGLFID-LGGMDGLCHITDLSWGRVSHPSKLYTVGEEIEVKILKYDKNSDRVSLGVKQ 276

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                  +    Q                           +  GS ++GKV    D+GV V
Sbjct: 277  LKSDPWERVPQQ---------------------------YAPGSRVKGKVVSITDYGVFV 309

Query: 893  SFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
              EE   V G +   +++ +         V  G  I+  +L V    + + L +K +  +
Sbjct: 310  ELEEG--VEGLVHISEMSWSKKPRHPSKIVGVGEEIEVQVLKVEAETKRISLGMKQLQPN 367

Query: 945  RFREANSNRQAQ-----KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
             +     +         K K   +    +G+ + ++ ++ +                   
Sbjct: 368  PWDVVEESYPVGSVIEGKIKNITDFGIFIGIEEGIDGLIHV------------------- 408

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS 1059
            + +S     K P +++  G+++ A V+ +   +   R  L +K +      ++      S
Sbjct: 409  SDLSWTERIKHPSEKYSKGETIQAVVLKIDKENE--RFSLGVKQLEPDPWQAAS-----S 461

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
            +Y +GS V+  IT +    + ++   G  G +H++E++ DK   V+     F +  T+ A
Sbjct: 462  NYPIGSTVEGTITNVTDFGVFVQLEEGIEGLVHVSEISKDK---VKTPVGMFNVNDTLKA 518

Query: 1120 RII 1122
             +I
Sbjct: 519  MVI 521



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 37/304 (12%)

Query: 367 YNQHKKVNARILFVDPTSRAVGLTL-----NPY--LLHNRAPPSHVK--VGDIYDQSKVV 417
           Y   +++  +IL  D  S  V L +     +P+  +    AP S VK  V  I D    V
Sbjct: 250 YTVGEEIEVKILKYDKNSDRVSLGVKQLKSDPWERVPQQYAPGSRVKGKVVSITDYGVFV 309

Query: 418 RVDRGLGLLLDIPST-----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
            ++ G+  L+ I        P      V + +  E +V K+E + K  S      LG + 
Sbjct: 310 ELEEGVEGLVHISEMSWSKKPRHPSKIVGVGEEIEVQVLKVEAETKRIS------LGMKQ 363

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
           L+     +++ S              G V++GK+  +  FG  +    G+  L  +  +S
Sbjct: 364 LQPNPWDVVEES-----------YPVGSVIEGKIKNITDFGIFIGIEEGIDGLIHVSDLS 412

Query: 533 EFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
             E +K P +K+  G  +   VL +  +++R ++  K+       A  S+Y   +     
Sbjct: 413 WTERIKHPSEKYSKGETIQAVVLKIDKENERFSLGVKQLEPDPWQAASSNYPIGS---TV 469

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G IT +   G FV+   G++G    SE+  D    P  M++V   +K  +++     R+
Sbjct: 470 EGTITNVTDFGVFVQLEEGIEGLVHVSEISKDKVKTPVGMFNVNDTLKAMVINVSADDRK 529

Query: 650 INLS 653
           I LS
Sbjct: 530 IGLS 533



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 104/240 (43%), Gaps = 39/240 (16%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            + M+T + EG I+ G I+ I     GL + +G  + G  H T+L    VS P   Y  G+
Sbjct: 198  EQMRTSLQEGQIIRGAITNITDY--GLFIDLG-GMDGLCHITDLSWGRVSHPSKLYTVGE 254

Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
                        ++ K+L+  +          S R SL G+    S         P + +
Sbjct: 255  E-----------IEVKILKYDKN---------SDRVSL-GVKQLKSD--------PWERV 285

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLV 1429
               +  +P   V+G V ++T  G F+ L   ++  V +S +S       P K   +G+ +
Sbjct: 286  P--QQYAPGSRVKGKVVSITDYGVFVELEEGVEGLVHISEMSWSKKPRHPSKIVGVGEEI 343

Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              +VL VE  +KR+ + +K          E     +  VG ++ G+IK +  +G+FI IE
Sbjct: 344  EVQVLKVEAETKRISLGMKQLQPNPWDVVE----ESYPVGSVIEGKIKNITDFGIFIGIE 399


>gi|395242108|ref|ZP_10419107.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
 gi|394480469|emb|CCI85347.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
          Length = 402

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 14/162 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+  
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDD 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATSGLHEGDIFEGEVKSLTNFGAFVEVTDGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SE+      +PS +  VGQ VK +++   P+ +RI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDPSEKRISLSI 351



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 34/200 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVVEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKP--------SDALK---V 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +    L   
Sbjct: 244  GQDVKVKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATSGLHEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL ++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDPS 343

Query: 1440 SKRVEVTLKTSDSRTASQSE 1459
             KR+ +++K +D   +S  +
Sbjct: 344  EKRISLSIKATDENASSNED 363



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDDDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     S LH GDI  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSGLHEGDIFEGEVKSLTNFGAFVEV 302



 Score = 48.5 bits (114), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 37/322 (11%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           E+VKPG+ FK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  ELVKPGETFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNPIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        SS Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SSRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS         E+   K+      G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFGKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H       +K G +   +++ +D++   + LS K +  +  +Q     S +H 
Sbjct: 228 EIS--YKHVDKPSDALKVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQA---TSGLHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             +  G V ++   G FV     + G    S+  +      S    VGQSV+  +L ++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDP 342

Query: 822 ETGRITLSLK---QSCCSSTDA 840
              RI+LS+K   ++  S+ DA
Sbjct: 343 SEKRISLSIKATDENASSNEDA 364


>gi|387892910|ref|YP_006323207.1| 30S ribosomal protein S1 [Pseudomonas fluorescens A506]
 gi|423690710|ref|ZP_17665230.1| ribosomal protein S1 [Pseudomonas fluorescens SS101]
 gi|387163095|gb|AFJ58294.1| ribosomal protein S1 [Pseudomonas fluorescens A506]
 gi|388001434|gb|EIK62763.1| ribosomal protein S1 [Pseudomonas fluorescens SS101]
          Length = 561

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGTVKEVDAKGAIIVLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I+L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 40.4 bits (93), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  I +
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGTVKEVDAKGAIIVL 472



 Score = 40.4 bits (93), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 145/382 (37%), Gaps = 64/382 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPESTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V  +     G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEYVQEND---KG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   +       K G E+  +++ V  K
Sbjct: 454 AIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAILS 578
           S+ I ++ K K  V+ K AI S
Sbjct: 514 SRVIQLSIKSKDEVEEKEAIQS 535


>gi|431805459|ref|YP_007232360.1| 30S ribosomal protein S1 [Liberibacter crescens BT-1]
 gi|430799434|gb|AGA64105.1| SSU ribosomal protein S1p [Liberibacter crescens BT-1]
          Length = 568

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 124/541 (22%), Positives = 203/541 (37%), Gaps = 97/541 (17%)

Query: 439 YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 498
           Y+ + D  E  V ++E  + E    R +         L    L     +G++F    VK 
Sbjct: 67  YIKVGDEVEVYVERIENAFGEAVFSREKARREESWIKLEAKFLSGEKVQGVIFNQ--VKG 124

Query: 499 GMVVKGKVIAVDSFGAIVQFPGG------VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           G+        VD  GAI   P        ++ + PL H  +F                F 
Sbjct: 125 GL-------TVDLDGAIAFLPRSQIDVRPIRDITPLMHNPQF----------------FE 161

Query: 553 VLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGV 609
           +L +  +R  I V+ +  L +S+    S   +  +   I  G +  I  +G FV    G+
Sbjct: 162 ILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQKLEEGQIVEGVVKNITDYGAFVDLA-GI 220

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK- 668
            G    +++       PS +  VGQ +K +I+     + RI+L   MK         +K 
Sbjct: 221 DGLLHVTDIAWYRISHPSELLTVGQQIKVQIIRVSHETHRISLG--MKQLENDPWQGIKE 278

Query: 669 ---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
               GS V G V  +T     + +          P      H+   +  K  I PG    
Sbjct: 279 RYPAGSKVCGTVTNITDYGAFIEIE---------PGIEGLTHVSEMSWTKKNIHPGKILS 329

Query: 726 Q-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
                   +L +D     + L  K  L N  +     A +  P S V G V N  E G F
Sbjct: 330 TSQKVEVVILEVDPVKRRISLGLKQVLGNPWENF---ARNYPPGSEVEGEVKNKTEFGLF 386

Query: 779 VRFLGRLTGFAPRSKAVDGQR--ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           +     L G    S  +D  R    + + Y  G  V++ +LDV+ E  RI+L +KQ    
Sbjct: 387 IGLDYNLDGMIHHSD-LDWSRPGEQVIEEYNKGDVVKAVVLDVDVEKERISLGIKQ---- 441

Query: 837 STDASFMQEHFLLEEKIAMLQSSKH-NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                           +   QSS + N +EL+        S++  +V   N+ G+ V   
Sbjct: 442 ----------------LRNAQSSDYGNSNELR------KNSIVSCEVIAVNENGIEVKLV 479

Query: 896 EHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
            H D+  FI   +L+             G ++   I++V+K +R + +S+K + I   +E
Sbjct: 480 GHDDITSFIRRSELSRDRNDQRSERFSVGQLVDVRIVNVSKKDRKLTVSIKALEIAEEKE 539

Query: 949 A 949
           A
Sbjct: 540 A 540


>gi|408482966|ref|ZP_11189185.1| 30S ribosomal protein S1 [Pseudomonas sp. R81]
          Length = 561

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGTVKEVDAKGAIIVLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I+L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 40.4 bits (93), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  I +
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGTVKEVDAKGAIIVL 472



 Score = 40.4 bits (93), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 148/390 (37%), Gaps = 66/390 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPESTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V  +     G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEYVQEND---KG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   +       K G E+  +++ V  K
Sbjct: 454 AIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAI--LSSYAEAT 584
           S+ I ++ K K  V+ K AI  L S  EA 
Sbjct: 514 SRVIQLSIKSKDEVEEKEAIQSLKSAPEAA 543


>gi|312959704|ref|ZP_07774221.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
 gi|311286421|gb|EFQ64985.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
          Length = 560

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGTVKEVDAKGAIIVLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I+L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 150/392 (38%), Gaps = 67/392 (17%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPESTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V  +     G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEYVQEND---KG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   +       K G E+  +++ V  K
Sbjct: 454 AIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAILS---SYAEATD 585
           S+ I ++ K K  V+ K AI S   +  EATD
Sbjct: 514 SRVIQLSIKSKDEVEEKEAIQSLKETVPEATD 545



 Score = 40.4 bits (93), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  I +
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGTVKEVDAKGAIIVL 472


>gi|398985770|ref|ZP_10691236.1| ribosomal protein S1 [Pseudomonas sp. GM24]
 gi|399011102|ref|ZP_10713435.1| ribosomal protein S1 [Pseudomonas sp. GM16]
 gi|398118440|gb|EJM08171.1| ribosomal protein S1 [Pseudomonas sp. GM16]
 gi|398153694|gb|EJM42190.1| ribosomal protein S1 [Pseudomonas sp. GM24]
          Length = 560

 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGTVKEVDAKGAIIVLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I+L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EYVQENDKGAIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 40.4 bits (93), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  I +
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGTVKEVDAKGAIIVL 472



 Score = 40.4 bits (93), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 146/386 (37%), Gaps = 64/386 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPESTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V  +     G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEYVQEND---KG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   +       K G E+  +++ V  K
Sbjct: 454 AIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAILSSYAE 582
           S+ I ++ K K   + K AI S  AE
Sbjct: 514 SRVIQLSIKSKDDAEEKEAIQSLKAE 539


>gi|134302709|ref|YP_001122677.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|421752625|ref|ZP_16189645.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           AS_713]
 gi|421754490|ref|ZP_16191461.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           831]
 gi|421758219|ref|ZP_16195075.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           80700103]
 gi|421760044|ref|ZP_16196867.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           70102010]
 gi|424675368|ref|ZP_18112275.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           70001275]
 gi|134050486|gb|ABO47557.1| Ribosomal protein S1 [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|409084514|gb|EKM84687.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           831]
 gi|409084662|gb|EKM84831.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           AS_713]
 gi|409089635|gb|EKM89670.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           70102010]
 gi|409090074|gb|EKM90098.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           80700103]
 gi|417434123|gb|EKT89095.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           70001275]
          Length = 556

 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 152/359 (42%), Gaps = 31/359 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G V+KG V  +  FGA +   GGV  L  +  +S   I  P     +G E+  +V+ 
Sbjct: 189 ISEGSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEINVKVIK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +RI++  K+      L I +        +   G +T I  +GCFV+   G++G  
Sbjct: 248 FDKEKQRISLGIKQLGEDPWLNIANELPVGAKLM---GTVTNITDYGCFVKLKEGIEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLG 670
             SE+   +    P     +GQ V+  ++     + RI+L     +P   SE +   K G
Sbjct: 305 HTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPNPWSEFEKNYKPG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
             V+G +  +T   V +     G   G     H++D   ++       +K G E + +LV
Sbjct: 365 DKVTGKIRSITEFGVFI-----GLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLV 419

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPN-SVVHGYVCNIIETGCFVRF-- 781
            ++ +   + LS K        QL  D      +IHP  S+V G V  + + G  V    
Sbjct: 420 SVNTDLERIALSMK--------QLSEDPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDE 471

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              + GF   S+       D+      GQ V + I++++++   ITLS+K     +T A
Sbjct: 472 DNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSITLSIKAVDEDNTAA 530



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 95/460 (20%), Positives = 181/460 (39%), Gaps = 71/460 (15%)

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS--- 572
            PG +    P+  ++  E            ++  +V+ + +KR  I V+ K  + ++   
Sbjct: 131 LPGSLVDTRPIKDVAHLE----------DKDIELKVVKIDTKRNNIVVSRKAVIEENNSG 180

Query: 573 -KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            + A+L   +E +   +  G +  I   G F+    GV G    +++       P+ +  
Sbjct: 181 DRDAMLEKISEGS---VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLS 236

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAV 685
           +GQ +  +++      +RI+L       ++ ED  + +      G+ + G V  +T    
Sbjct: 237 IGQEINVKVIKFDKEKQRISLGI----KQLGEDPWLNIANELPVGAKLMGTVTNITDYGC 292

Query: 686 VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-LVLDNESSNLLLSAKYS 744
             +V  K   +G + T  +    ++    K+V   G E + + L LD ++  + L  K  
Sbjct: 293 --FVKLKEGIEGLVHTSEMDWTNKNVNPHKAV-SIGQEVEVIVLELDADNHRISLGIKQC 349

Query: 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
             N   +      +  P   V G + +I E G F+   G + G    S       A   K
Sbjct: 350 RPNPWSEFEK---NYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIK 406

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
               G  V + ++ VN++  RI LS+KQ        +F+  H                  
Sbjct: 407 ELKKGDEVEAVLVSVNTDLERIALSMKQ-LSEDPFKNFINIHPK---------------- 449

Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-------THHQLAGATVESG 917
                     GS++ GKV +  D G VV  +E +++ GFI        H +     +  G
Sbjct: 450 ----------GSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEG 499

Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
             ++A I+++   +R + LS+K V  D      SN + ++
Sbjct: 500 QEVEARIINIDAKKRSITLSIKAVDEDNTAAGKSNYKVEQ 539



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            + G V N+T  GCF+ L   ++  V  S +  ++  V +P K   IG+ V   VL ++  
Sbjct: 280  LMGTVTNITDYGCFVKLKEGIEGLVHTSEMDWTNKNV-NPHKAVSIGQEVEVIVLELDAD 338

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            + R+ + +K       S+ E     N   GD V G+I+ +  +G+FI +E
Sbjct: 339  NHRISLGIKQCRPNPWSEFE----KNYKPGDKVTGKIRSITEFGVFIGLE 384



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E +S   +++G VKN+T  G FI L   +D  + ++++S   +  P     IG+ +  +
Sbjct: 186  LEKISEGSVLKGIVKNITDFGAFIDLG-GVDGLLHITDISWSRISHPTDVLSIGQEINVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            V+  +   +R+ + +K    +      +N  + L VG  ++G +  +  YG F+ ++
Sbjct: 245  VIKFDKEKQRISLGIK----QLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297


>gi|257455031|ref|ZP_05620275.1| ribosomal protein S1 [Enhydrobacter aerosaccus SK60]
 gi|257447544|gb|EEV22543.1| ribosomal protein S1 [Enhydrobacter aerosaccus SK60]
          Length = 557

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 32/352 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+++ G  V G V  +  +GA V   GG+  L  +  M+   I  P +  +VG EL  +V
Sbjct: 186 SNLEEGQEVVGVVKNLTDYGAFVDL-GGIDGLLHITDMAWRRIKHPSEVVEVGQELKVKV 244

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+        +L++Y + T+       +T +  +GCF    +G++G
Sbjct: 245 LKFDRERNRVSLGLKQLGTDPWQDVLNNYPKGTN---VKARVTNLTDYGCFAEIADGIEG 301

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVK 668
               SE+   +    PS +  +G  +  +I+      RRI+L      P    E D   +
Sbjct: 302 LVHVSEMDHTNKNIHPSKVVQIGDEIMVQILDIDEDRRRISLGIKQTMPNPWEEFDKNHQ 361

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-- 726
            G  VSG +  +T   + +     G   G     HL+D L      +  I+   + D   
Sbjct: 362 KGDKVSGTIKSITDFGIFI-----GLEGGIDGLVHLSD-LSWTESGEEAIRNYNKGDTVE 415

Query: 727 --LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFV 779
             +L +D E++ + L  K        QL SD    ++  N   +VV G V ++   G  V
Sbjct: 416 AVILSVDAEANRISLGIK--------QLNSDPFNEYLVSNDRGAVVKGVVTDVDAKGAKV 467

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +    + G+   S+    +  D +    VG  V + I+ V+ +T  I LS++
Sbjct: 468 KLADDVEGYLRASEIQQDKVDDATTVLNVGDEVEAKIVSVDRKTRGINLSVR 519



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 14/182 (7%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVG--AELV 550
           + G  V G + ++  FG  +   GG+  L    H+S+    + G    + +  G   E V
Sbjct: 361 QKGDKVSGTIKSITDFGIFIGLEGGIDGLV---HLSDLSWTESGEEAIRNYNKGDTVEAV 417

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGV 609
              +  ++ RI++  K+          + Y  + DR  +  G +T ++  G  V+  + V
Sbjct: 418 ILSVDAEANRISLGIKQLNSDP----FNEYLVSNDRGAVVKGVVTDVDAKGAKVKLADDV 473

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
           +G+   SE+  D   + +++ +VG  V+ +I+S    +R INLS   K      D +  L
Sbjct: 474 EGYLRASEIQQDKVDDATTVLNVGDEVEAKIVSVDRKTRGINLSVRAKDEAEQRDAIKAL 533

Query: 670 GS 671
            S
Sbjct: 534 SS 535


>gi|338730120|ref|YP_004659512.1| RNA binding S1 domain-containing protein [Thermotoga thermarum DSM
           5069]
 gi|335364471|gb|AEH50416.1| RNA binding S1 domain protein [Thermotoga thermarum DSM 5069]
          Length = 538

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 17/229 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAELVFRVL 554
           G +V+G ++ +  FG  V    G+  L     +SE     + V   K FKVG  +   V+
Sbjct: 273 GKIVQGTIVKIVPFGLFVNLEPGIDGLV---RISEIFWGNKKVDLRKYFKVGEMIQVEVI 329

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  ++KRI +++K+        I   Y E        G I K+   G  V F +G+ GF
Sbjct: 330 EVDPQNKRIDLSYKRAKGDPWENIFERYKEGE---TAEGTILKVLPTGLIVEFEDGISGF 386

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
            PRSEL  +   +P+  +  GQ VK +I+S     RR+ LS         +D L KLG  
Sbjct: 387 VPRSELSWEKISDPTQHFKEGQKVKVKILSIDDKQRRMRLSIKELFPDPWQDVLTKLGE- 445

Query: 673 VSGVVDVVTPNAVVVYVIAK--GYS-KGTIPTEHLADHLEHATVMKSVI 718
            +  V+VV  + V    I K   Y+ +G +P  H +  L+    ++ ++
Sbjct: 446 -NREVNVVVQSKVNSGYIVKLLDYNVEGFMPASHASGDLKEGDKLEVLV 493



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 111/520 (21%), Positives = 215/520 (41%), Gaps = 87/520 (16%)

Query: 495 DVKPGMVVKGKVIAVD-SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +V+PG  V+G +  +    G  V      +   P+      E+V P + +KVG +L  +V
Sbjct: 17  EVRPGQTVEGTITRISPGEGIYVDCKAKSEGFVPID-----ELVFPLENYKVGQKLKLQV 71

Query: 554 L--GVKSKRITVTHKKT---LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           L  G + + IT++ KK    +++S+  IL +Y +        G I    + G  V  YN 
Sbjct: 72  LKIGGEEESITLSEKKPYARMIRSR--ILEAYEKGE---TVKGKIVDQIQGGYRVLLYNS 126

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVG-QVVKCRI---MSSIPASRRINLSFMMKPTRVSED 664
           ++ F P S   +    EP     +   +V+C        +  SR+  L    K    +  
Sbjct: 127 IEAFLPGSH-SMIKREEPIPQEELDFLIVECEFGKRRQRLVVSRKAILEKQKKEFFSTH- 184

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGY 722
              K+G +V G+V+ VT +  ++ +         +P   ++    L+   V+K   K   
Sbjct: 185 ---KVGDVVEGIVEKVTDSHALLNI--NSCISAILPRSEVSHDKKLDPTDVLKKNEKVKV 239

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              +++ LD  SS +++S K    +  + +   A       +V G +  I+  G FV   
Sbjct: 240 ---KIVELDEASSKIVVSLKAMEPDPWENI---AERYPVGKIVQGTIVKIVPFGLFVNLE 293

Query: 783 GRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             + G    S+   G ++ DL K + VG+ ++  +++V+ +  RI LS K++     +  
Sbjct: 294 PGIDGLVRISEIFWGNKKVDLRKYFKVGEMIQVEVIEVDPQNKRIDLSYKRAKGDPWENI 353

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
           F                           E +  G   EG + +    G++V FE+   + 
Sbjct: 354 F---------------------------ERYKEGETAEGTILKVLPTGLIVEFED--GIS 384

Query: 902 GFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
           GF+   +L+   +       + G  ++  IL +   +R + LS+K +F D +++  +   
Sbjct: 385 GFVPRSELSWEKISDPTQHFKEGQKVKVKILSIDDKQRRMRLSIKELFPDPWQDVLTK-- 442

Query: 955 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 994
                        LG ++ VN +V+    +  ++ L +YN
Sbjct: 443 -------------LGENREVNVVVQSKVNSGYIVKLLDYN 469



 Score = 47.4 bits (111), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 106/535 (19%), Positives = 208/535 (38%), Gaps = 100/535 (18%)

Query: 755  DASHIHPNSVVHGYVCNIIE-TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            D   + P   V G +  I    G +V    +  GF P  + V        + Y VGQ ++
Sbjct: 14   DWIEVRPGQTVEGTITRISPGEGIYVDCKAKSEGFVPIDELVFP-----LENYKVGQKLK 68

Query: 814  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
              +L +  E   ITLS K+                      M++S        + +E + 
Sbjct: 69   LQVLKIGGEEESITLSEKKPYAR------------------MIRS--------RILEAYE 102

Query: 874  IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 933
             G  ++GK+ +    G           Y  + ++ +      S S+I+    +    E L
Sbjct: 103  KGETVKGKIVDQIQGG-----------YRVLLYNSIEAFLPGSHSMIKRE--EPIPQEEL 149

Query: 934  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 993
              L ++  F  R +    +R+A  +K+K+E      V   V  IVE V +++ +L++   
Sbjct: 150  DFLIVECEFGKRRQRLVVSRKAILEKQKKEFFSTHKVGDVVEGIVEKVTDSHALLNINSC 209

Query: 994  NHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 1053
              +I   S   ++ +  P       + V   ++ L  +S+  ++++ LKA+      +  
Sbjct: 210  ISAILPRSEVSHDKKLDPTDVLKKNEKVKVKIVELDEASS--KIVVSLKAMEPDPWENI- 266

Query: 1054 RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 1113
                   Y VG +VQ  I +I P  L +    G  G + I+E+      V  +L   FK+
Sbjct: 267  ----AERYPVGKIVQGTIVKIVPFGLFVNLEPGIDGLVRISEIFWGNKKV--DLRKYFKV 320

Query: 1114 GQTVTARII---AKSNKPDMK----KSFLWE---------LSIKPSMLTVSEIGSKLLFE 1157
            G+ +   +I    ++ + D+     K   WE          + + ++L V   G  + FE
Sbjct: 321  GEMIQVEVIEVDPQNKRIDLSYKRAKGDPWENIFERYKEGETAEGTILKVLPTGLIVEFE 380

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
            +        ++G+V + +  W  ++                +P++       F  G+ V 
Sbjct: 381  DG-------ISGFVPRSELSWEKIS----------------DPTQ------HFKEGQKVK 411

Query: 1218 GHVLSINKEKKLLRLVLRP-FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
              +LSI+ +++ +RL ++  F D   D    +  +     + +  +  G I K+L
Sbjct: 412  VKILSIDDKQRRMRLSIKELFPDPWQDVLTKLGENREVNVVVQSKVNSGYIVKLL 466


>gi|50085438|ref|YP_046948.1| 30S ribosomal protein S1 [Acinetobacter sp. ADP1]
 gi|49531414|emb|CAG69126.1| 30S ribosomal protein S1 [Acinetobacter sp. ADP1]
          Length = 557

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI+S Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVKL 669
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKA 360

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D    E         K G   
Sbjct: 361 HEKGEKVSGTIKSITDFGIFI-----GLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLGDEIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E     H   + G  V G + ++  FG  +  PGG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKAH---EKGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + ++     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 AKGATVKLGDEIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 43.9 bits (102), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 81/411 (19%), Positives = 168/411 (40%), Gaps = 68/411 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    + S             +  GS+++ +V    D+G      E   V 
Sbjct: 262  ------LGEDPWLAIMSR------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE-ANSN 952
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E A ++
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAH 361

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFP 1011
             + +K            V  T+ +I +      + + LP     + + S   +N Q +  
Sbjct: 362  EKGEK------------VSGTIKSITDF----GIFIGLPGGIDGLVHLSDISWNEQGEEA 405

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+  +
Sbjct: 406  IRRYKKGDTVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANER-----GALVKGTV 458

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            T +      +K G      +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 459  TAVDAKGATVKLGDEIEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506


>gi|254368625|ref|ZP_04984641.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121528|gb|EDO65719.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 556

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 149/350 (42%), Gaps = 31/350 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G V+KG V  +  FGA +   GGV  L  +  +S   I  P     +G E+  +V+ 
Sbjct: 189 ISEGSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +RI++  K+      L I +        +   G +T I  +GCFV+   G++G  
Sbjct: 248 FDKEKQRISLGIKQLGEDPWLNIANELPVGAKLM---GTVTNITDYGCFVKLKEGIEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLG 670
             SE+   +    P     +GQ V+  ++     + RI+L     +P   SE +   K G
Sbjct: 305 HTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPNPWSEFEKNYKPG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
             V+G +  +T   V +     G   G     H++D   ++       +K G E + +LV
Sbjct: 365 DKVTGKIRSITEFGVFI-----GLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLV 419

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPN-SVVHGYVCNIIETGCFVRF-- 781
            ++ +   + LS K        QL  D      +IHP  S+V G V  + + G  V    
Sbjct: 420 SVNTDLERIALSMK--------QLSEDPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDE 471

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + GF   S+       D+      GQ V + I++++++   ITLS+K
Sbjct: 472 DNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSITLSIK 521



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 95/460 (20%), Positives = 181/460 (39%), Gaps = 71/460 (15%)

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS--- 572
            PG +    P+  ++  E            ++  +V+ + +KR  I V+ K  + ++   
Sbjct: 131 LPGSLVDTRPIKDVAHLEY----------KDIELKVVKIDTKRNNIVVSRKAVIEENNSG 180

Query: 573 -KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            + A+L   +E +   +  G +  I   G F+    GV G    +++       P+ +  
Sbjct: 181 DRDAMLEKISEGS---VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLS 236

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAV 685
           +GQ +  +++      +RI+L       ++ ED  + +      G+ + G V  +T    
Sbjct: 237 IGQEIDVKVIKFDKEKQRISLGI----KQLGEDPWLNIANELPVGAKLMGTVTNITDYGC 292

Query: 686 VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-LVLDNESSNLLLSAKYS 744
             +V  K   +G + T  +    ++    K+V   G E + + L LD ++  + L  K  
Sbjct: 293 --FVKLKEGIEGLVHTSEMDWTNKNVNPHKAV-SIGQEVEVIVLELDADNHRISLGIKQC 349

Query: 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
             N   +      +  P   V G + +I E G F+   G + G    S       A   K
Sbjct: 350 RPNPWSEFEK---NYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIK 406

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
               G  V + ++ VN++  RI LS+KQ        +F+  H                  
Sbjct: 407 ELKKGDEVEAVLVSVNTDLERIALSMKQ-LSEDPFKNFINIHPK---------------- 449

Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-------THHQLAGATVESG 917
                     GS++ GKV +  D G VV  +E +++ GFI        H +     +  G
Sbjct: 450 ----------GSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEG 499

Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
             ++A I+++   +R + LS+K V  D      SN + ++
Sbjct: 500 QEVEARIINIDAKKRSITLSIKAVDEDNTAAGKSNYKVEQ 539



 Score = 43.9 bits (102), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            + G V N+T  GCF+ L   ++  V  S +  ++  V +P K   IG+ V   VL ++  
Sbjct: 280  LMGTVTNITDYGCFVKLKEGIEGLVHTSEMDWTNKNV-NPHKAVSIGQEVEVIVLELDAD 338

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            + R+ + +K       S+ E     N   GD V G+I+ +  +G+FI +E
Sbjct: 339  NHRISLGIKQCRPNPWSEFE----KNYKPGDKVTGKIRSITEFGVFIGLE 384



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E +S   +++G VKN+T  G FI L   +D  + ++++S   +  P     IG+ +  +
Sbjct: 186  LEKISEGSVLKGIVKNITDFGAFIDLG-GVDGLLHITDISWSRISHPTDVLSIGQEIDVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            V+  +   +R+ + +K    +      +N  + L VG  ++G +  +  YG F+ ++
Sbjct: 245  VIKFDKEKQRISLGIK----QLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297


>gi|339444205|ref|YP_004710209.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
 gi|338903957|dbj|BAK43808.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
          Length = 424

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +  GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLTKGMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V  + +RI++  K+T     + ++ SY   +   I  G +TKI   G F+     ++G
Sbjct: 261 LDVDLQRERISLGLKQTTEDPWIKLVESYPVGS---IVDGKVTKIVPFGAFIELGQSIEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+ +     P+ +   G  VK ++M   P  RRI+LS 
Sbjct: 318 LVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRISLSM 360



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 149/366 (40%), Gaps = 52/366 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     V      +G  P  EL +    +PS + ++G  ++  ++      
Sbjct: 36  LVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRKDADPSDIVNLGDKIEALVLQKEDKD 95

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +     RV E    K G +V+G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWIRVEEK--FKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
                L+    + + I+      +++ +D   +N++LS +  L    +   ++  S +  
Sbjct: 154 RRVKDLD--MYLNTEIEA-----RVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLTK 206

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
           +  RI+L LKQ+                                +K VE + +GS+++GK
Sbjct: 266 QRERISLGLKQTTEDPW---------------------------IKLVESYPVGSIVDGK 298

Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLV 934
           V +   FG  +   +   + G +   ++A          V++G  ++  ++++    R +
Sbjct: 299 VTKIVPFGAFIELGQS--IEGLVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRI 356

Query: 935 DLSLKT 940
            LS+K 
Sbjct: 357 SLSMKA 362


>gi|440739723|ref|ZP_20919229.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BRIP34879]
 gi|447915934|ref|YP_007396502.1| 30S ribosomal protein S1 [Pseudomonas poae RE*1-1-14]
 gi|440379053|gb|ELQ15658.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BRIP34879]
 gi|445199797|gb|AGE25006.1| 30S ribosomal protein S1 [Pseudomonas poae RE*1-1-14]
          Length = 563

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 144/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  +  +  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEFVQDNDKGAIVKGIVKEVDAKGAIITLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 45/81 (55%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E ++D     IV+G VK V +KG  I L+  ++A +  S +S   VE        G+ V 
Sbjct: 445  EFVQDNDKGAIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+   +N      G IV G +K V++ G  IT+
Sbjct: 429  ERISLGIKQLESDPFSEFVQDN----DKGAIVKGIVKEVDAKGAIITL 472



 Score = 40.8 bits (94), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 148/391 (37%), Gaps = 64/391 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPESTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V    D   G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEFV---QDNDKG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   +       K G E+  +++ V  K
Sbjct: 454 AIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAILSSYAEATDRL 587
           S+ I ++ K K   + K AI S   + +D +
Sbjct: 514 SRVIQLSIKSKDDAEEKEAIQSLKDKPSDSI 544


>gi|220934715|ref|YP_002513614.1| 30S ribosomal protein S1 [Thioalkalivibrio sulfidophilus HL-EbGr7]
 gi|219996025|gb|ACL72627.1| ribosomal protein S1 [Thioalkalivibrio sulfidophilus HL-EbGr7]
          Length = 558

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 155/365 (42%), Gaps = 31/365 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GMV+KG V  +  +GA +   GG+  L  +  M+   +  P +  ++G E+  +VL
Sbjct: 188 NLQEGMVLKGIVKNLTDYGAFLDL-GGIDGLLHITDMAWKRVKHPSEVVEIGQEIEVKVL 246

Query: 555 GVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               +R  V+   K L       ++       RL   G +T I  +GCFV   +GV+G  
Sbjct: 247 KFDRERNRVSLGLKQLGDDPWENITRRYPIGSRLF--GKVTNITDYGCFVEIEDGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--- 669
             SE+   +    P+ M  VG  V+  I+      RRI+L   +K  + +  D       
Sbjct: 305 HVSEMDWTNKNIAPNKMVAVGDEVEVMILDIDEERRRISLG--IKQCKANPWDEFAATHN 362

Query: 670 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-L 727
            G  VSGV+  +T     ++V   G   G +    L+ ++E    +++  K G E +  +
Sbjct: 363 KGEKVSGVIKSITDFG--IFVGLDGGIDGLVHLSDLSWNMEGEEAVRN-YKKGDEIEAVV 419

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVRF 781
           L +D E   + L  K        QL  D      A H    S+V G V  +      V  
Sbjct: 420 LAVDPERERISLGVK--------QLDKDPFSNFVAEHAK-GSIVKGVVKEVDAKAAIVEL 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              + G    S+    +  D+     VG +V +  + V+ +   +TLS+K    +  +A 
Sbjct: 471 ADSVDGVLRASELSRDRVEDVRSVLNVGDTVEAKFMGVDRKNRTVTLSIKAKDYAE-EAE 529

Query: 842 FMQEH 846
            +Q++
Sbjct: 530 ALQDY 534



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 7/178 (3%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPG 540
           KA+ ++    TH+    G  V G + ++  FG  V   GG+  L  L  +S   E  +  
Sbjct: 350 KANPWDEFAATHN---KGEKVSGVIKSITDFGIFVGLDGGIDGLVHLSDLSWNMEGEEAV 406

Query: 541 KKFKVGAELVFRVLGVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           + +K G E+   VL V  +R  ++   K L K   +  +  AE     I  G + +++  
Sbjct: 407 RNYKKGDEIEAVVLAVDPERERISLGVKQLDKDPFS--NFVAEHAKGSIVKGVVKEVDAK 464

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
              V   + V G    SEL  D   +  S+ +VG  V+ + M     +R + LS   K
Sbjct: 465 AAIVELADSVDGVLRASELSRDRVEDVRSVLNVGDTVEAKFMGVDRKNRTVTLSIKAK 522



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 131/359 (36%), Gaps = 49/359 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L+ +QEGMVL   VK++ D+G  L  G     G L   ++A    ++    V+ G  ++ 
Sbjct: 186 LKNLQEGMVLKGIVKNLTDYGAFLDLG--GIDGLLHITDMAWKRVKHPSEVVEIGQEIEV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            V   DR R  V      L  DP    + +T+            G  +  +V +I + G 
Sbjct: 244 KVLKFDRERNRVSLGLKQLGDDP---WENITRRYP--------IGSRLFGKVTNITDYGC 292

Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----N 392
            +       G V +  +  T              +V   IL +D   R + L +     N
Sbjct: 293 FVEIEDGVEGLVHVSEMDWTNKNIAPNKMVAVGDEVEVMILDIDEERRRISLGIKQCKAN 352

Query: 393 PY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
           P+      HN+       +  I D    V +D G+  L+ +     +           EE
Sbjct: 353 PWDEFAATHNKGEKVSGVIKSITDFGIFVGLDGGIDGLVHLSDLSWNMEG--------EE 404

Query: 449 EVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK 505
            VR     YK+G  +   +L     R    L    L    F   V  H+    G +VKG 
Sbjct: 405 AVRN----YKKGDEIEAVVLAVDPERERISLGVKQLDKDPFSNFVAEHA---KGSIVKGV 457

Query: 506 VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           V  VD+  AIV+    V  +     +S   +        VG  +  + +GV  K  TVT
Sbjct: 458 VKEVDAKAAIVELADSVDGVLRASELSRDRVEDVRSVLNVGDTVEAKFMGVDRKNRTVT 516



 Score = 43.9 bits (102), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L   M+++G VKN+T  G F+ L   +D  + +++++   V+ P +   IG+ + 
Sbjct: 184  ELLKNLQEGMVLKGIVKNLTDYGAFLDLG-GIDGLLHITDMAWKRVKHPSEVVEIGQEIE 242

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             +VL  +    RV + LK    +       N      +G  + G++  +  YG F+ IE+
Sbjct: 243  VKVLKFDRERNRVSLGLK----QLGDDPWENITRRYPIGSRLFGKVTNITDYGCFVEIED 298



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 164/382 (42%), Gaps = 53/382 (13%)

Query: 487 EGLVFTHSDVKPGMVVKGKVIAVDS----FGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           E + FT   +KPG ++ G VI V        A ++  G V A   L    E E VK G  
Sbjct: 11  ESMAFTQ--MKPGSIINGTVIHVTPDVVVINAGLKSEGVVPADQFLNERGEME-VKVGDV 67

Query: 543 FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
            +V  E      G    R++    K   ++K       A  +D+ IT G I+   K G  
Sbjct: 68  VEVALESPEDGFG--ETRLSREKAK---RAKAWERLETAMESDQTIT-GMISGKVKGGFT 121

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMM 656
           V   + ++ F P S + + P  + +  Y  G+ ++ +++      +++  SRR   + + 
Sbjct: 122 VELGD-IRAFLPGSLVDVRPVRDTA--YLEGKELEFKLIKLDQRRNNVVVSRR---AVVE 175

Query: 657 KPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
           K      D+L+K    G ++ G+V  +T     + +   G   G +    +A   ++H +
Sbjct: 176 KEYSAERDELLKNLQEGMVLKGIVKNLTDYGAFLDL---GGIDGLLHITDMAWKRVKHPS 232

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVH 766
               V++ G E + ++L  D E + + L  K        QL  D     +  +P  S + 
Sbjct: 233 ---EVVEIGQEIEVKVLKFDRERNRVSLGLK--------QLGDDPWENITRRYPIGSRLF 281

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETG 824
           G V NI + GCFV     + G    S+ +D    +++  K   VG  V   ILD++ E  
Sbjct: 282 GKVTNITDYGCFVEIEDGVEGLVHVSE-MDWTNKNIAPNKMVAVGDEVEVMILDIDEERR 340

Query: 825 RITLSLKQSCCSSTDASFMQEH 846
           RI+L +KQ C ++    F   H
Sbjct: 341 RISLGIKQ-CKANPWDEFAATH 361


>gi|257792261|ref|YP_003182867.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|317490189|ref|ZP_07948677.1| S1 RNA binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833424|ref|ZP_08165873.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
 gi|257476158|gb|ACV56478.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
 gi|316910683|gb|EFV32304.1| S1 RNA binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485348|gb|EGC87817.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
          Length = 405

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   VL V  
Sbjct: 207 GMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +RI++  K+T     + ++ SY   T   I  G +TKI   G F+     ++G    S
Sbjct: 266 QRERISLGLKQTTEDPWVKLVESYPVGT---IVDGKVTKIVPFGAFIELGQSIEGLVHIS 322

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           E+ +     P+ +   G  VK ++M   P  RRI+LS 
Sbjct: 323 EMAMRHIDTPAQVVKAGDEVKVKVMEINPERRRISLSM 360



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 150/371 (40%), Gaps = 54/371 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     V      +G  P  EL +    +PS +  +G+ ++  ++      
Sbjct: 36  LVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRKDADPSDIVELGEKIEALVLQKEDKD 95

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +     RV E    K G +V+G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWIRVEEK--FKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIH 760
                L+        +  G E + +++ +D   +N++LS +  L    +   ++  + + 
Sbjct: 154 RRVKDLD--------MYLGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILAKLS 205

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
               + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+
Sbjct: 206 KGMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVD 264

Query: 821 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
            +  RI+L LKQ+                                +K VE + +G++++G
Sbjct: 265 LQRERISLGLKQTTEDPW---------------------------VKLVESYPVGTIVDG 297

Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERL 933
           KV +   FG  +   +   + G +   ++A          V++G  ++  ++++    R 
Sbjct: 298 KVTKIVPFGAFIELGQS--IEGLVHISEMAMRHIDTPAQVVKAGDEVKVKVMEINPERRR 355

Query: 934 VDLSLKTVFID 944
           + LS+K    D
Sbjct: 356 ISLSMKAAAAD 366


>gi|381179372|ref|ZP_09888226.1| ribosomal protein S1 [Treponema saccharophilum DSM 2985]
 gi|380768778|gb|EIC02763.1| ribosomal protein S1 [Treponema saccharophilum DSM 2985]
          Length = 565

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 157/351 (44%), Gaps = 25/351 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++ + G VVKG V +  +FGA +   GG   L  +  MS      P +  K G E+  +V
Sbjct: 191 AETQIGDVVKGTVKSFTNFGAFIDL-GGFDGLLHVNDMSWGHATSPKEFVKKGQEIELKV 249

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + +  + KRI ++ K       +     Y    D  I  G +TK+   G F+    G++G
Sbjct: 250 IRLVPEEKRINLSLKHFTEDPWIHFAEKY-HMND--IVDGVVTKLTDFGAFIELEEGIEG 306

Query: 612 FAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---DLV 667
            A  SE        +PS +  +G  +KC ++     + R++L  + + T    D   D  
Sbjct: 307 LAHVSEFSWTKRVSKPSDVVKIGDKIKCMVLGYDIQAGRVSLG-LKQVTDNPWDSIADKY 365

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFD 725
            +G+ ++G V  +T N   +  + +G   G +  E ++    ++HA    SV+K G E +
Sbjct: 366 PVGTKLTGSVVKITSNGAFIQ-LEEGID-GFLHAEDISWTKKIKHAG---SVLKVGDEVE 420

Query: 726 QLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            +++   +E   + +  K ++ N  +Q    A +    S   G +  I E G FV+    
Sbjct: 421 VVVLDVDSEEKRITVGMKQTVDNPWKQF---AQNYSVGSSFEGEITKIAEFGIFVKSPDG 477

Query: 785 LTGFAPRSKAVDGQR---ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           + G   ++   D +     ++   Y VG  V  +++D+N E  R+  S+K+
Sbjct: 478 IEGLVNKANLTDDRSIPYEEVVSKYKVGDKVSVSVVDINVERERVAFSIKE 528



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G VK+ T+ G FI L    D  + ++++S G+  SP++    G+ +  +V+ + P  
Sbjct: 198  VVKGTVKSFTNFGAFIDLG-GFDGLLHVNDMSWGHATSPKEFVKKGQEIELKVIRLVPEE 256

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            KR+ ++LK           I+     H+ DIV G + ++  +G FI +E
Sbjct: 257  KRINLSLK----HFTEDPWIHFAEKYHMNDIVDGVVTKLTDFGAFIELE 301



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 90/444 (20%), Positives = 171/444 (38%), Gaps = 83/444 (18%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQVVKCRIMSSI 644
           G I K  K G  V     +  F P S+  +    +PS +      ++V ++      +++
Sbjct: 112 GVIEKEVKGGFDVNLGGDIHAFLPVSQSDIQRVEDPSKLIGLNAKFYVERIY-TDSKANV 170

Query: 645 PASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
             +RR  L  ++   R       ++G +V G V   T     + +   G   G +    +
Sbjct: 171 VVNRRKYLEELVDENREKFFAETQIGDVVKGTVKSFTNFGAFIDL---GGFDGLLHVNDM 227

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
           +    HAT  K  +K G E + +++ L  E   + LS K+   +        A   H N 
Sbjct: 228 S--WGHATSPKEFVKKGQEIELKVIRLVPEEKRINLSLKHFTEDPWIHF---AEKYHMND 282

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSE 822
           +V G V  + + G F+     + G A  S+    +R +  S    +G  ++  +L  + +
Sbjct: 283 IVDGVVTKLTDFGAFIELEEGIEGLAHVSEFSWTKRVSKPSDVVKIGDKIKCMVLGYDIQ 342

Query: 823 TGRITLSLKQSCCSSTDA----------------------SFMQ-----EHFLLEEKIAM 855
            GR++L LKQ   +  D+                      +F+Q     + FL  E I+ 
Sbjct: 343 AGRVSLGLKQVTDNPWDSIADKYPVGTKLTGSVVKITSNGAFIQLEEGIDGFLHAEDISW 402

Query: 856 LQSSKHNGSELK------------------------------W---VEGFIIGSVIEGKV 882
            +  KH GS LK                              W    + + +GS  EG++
Sbjct: 403 TKKIKHAGSVLKVGDEVEVVVLDVDSEEKRITVGMKQTVDNPWKQFAQNYSVGSSFEGEI 462

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 942
            +  +FG+ V  +    + G +    L     +  S+    ++   K    V +S+  + 
Sbjct: 463 TKIAEFGIFV--KSPDGIEGLVNKANLT----DDRSIPYEEVVSKYKVGDKVSVSVVDIN 516

Query: 943 IDRFREANSNRQAQKKKRKREASK 966
           ++R R A S ++ +K + ++E S+
Sbjct: 517 VERERVAFSIKEFKKAQERKEMSQ 540


>gi|56707348|ref|YP_169244.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669818|ref|YP_666375.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|254370028|ref|ZP_04986035.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874185|ref|ZP_05246895.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|379716548|ref|YP_005304884.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           TIGB03]
 gi|379725231|ref|YP_005317417.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           TI0902]
 gi|385793945|ref|YP_005830351.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           NE061598]
 gi|421754800|ref|ZP_16191764.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           80700075]
 gi|56603840|emb|CAG44816.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320151|emb|CAL08199.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568273|gb|EDN33927.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840184|gb|EET18620.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158480|gb|ADA77871.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           NE061598]
 gi|377826680|gb|AFB79928.1| SSU ribosomal protein S1p [Francisella tularensis subsp. tularensis
           TI0902]
 gi|377828225|gb|AFB78304.1| SSU ribosomal protein S1p [Francisella tularensis subsp. tularensis
           TIGB03]
 gi|409090280|gb|EKM90301.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           80700075]
          Length = 556

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 149/350 (42%), Gaps = 31/350 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G V+KG V  +  FGA +   GGV  L  +  +S   I  P     +G E+  +V+ 
Sbjct: 189 ISEGSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +RI++  K+      L I +        +   G +T I  +GCFV+   G++G  
Sbjct: 248 FDKEKQRISLGIKQLGEDPWLNIANELPVGAKLM---GTVTNITDYGCFVKLKEGIEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLG 670
             SE+   +    P     +GQ ++  ++     + RI+L     +P   SE +   K G
Sbjct: 305 HTSEMDWTNKNVNPHKAVSIGQEIEVIVLELDADNHRISLGIKQCRPNPWSEFEKNYKPG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
             V+G +  +T   V +     G   G     H++D   ++       +K G E + +LV
Sbjct: 365 DKVTGKIRSITEFGVFI-----GLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLV 419

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPN-SVVHGYVCNIIETGCFVRF-- 781
            ++ +   + LS K        QL  D      +IHP  S+V G V  + + G  V    
Sbjct: 420 SVNTDLERIALSMK--------QLSEDPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDE 471

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + GF   S+       D+      GQ V + I++++++   ITLS+K
Sbjct: 472 DNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSITLSIK 521



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 95/460 (20%), Positives = 181/460 (39%), Gaps = 71/460 (15%)

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS--- 572
            PG +    P+  ++  E            ++  +V+ + +KR  I V+ K  + ++   
Sbjct: 131 LPGSLVDTRPIKDVAHLE----------DKDIELKVVKIDTKRNNIVVSRKAVIEENNSG 180

Query: 573 -KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            + A+L   +E +   +  G +  I   G F+    GV G    +++       P+ +  
Sbjct: 181 DRDAMLEKISEGS---VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLS 236

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAV 685
           +GQ +  +++      +RI+L       ++ ED  + +      G+ + G V  +T    
Sbjct: 237 IGQEIDVKVIKFDKEKQRISLGI----KQLGEDPWLNIANELPVGAKLMGTVTNITDYGC 292

Query: 686 VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-LVLDNESSNLLLSAKYS 744
             +V  K   +G + T  +    ++    K+V   G E + + L LD ++  + L  K  
Sbjct: 293 --FVKLKEGIEGLVHTSEMDWTNKNVNPHKAV-SIGQEIEVIVLELDADNHRISLGIKQC 349

Query: 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
             N   +      +  P   V G + +I E G F+   G + G    S       A   K
Sbjct: 350 RPNPWSEFEK---NYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIK 406

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
               G  V + ++ VN++  RI LS+KQ        +F+  H                  
Sbjct: 407 ELKKGDEVEAVLVSVNTDLERIALSMKQ-LSEDPFKNFINIHPK---------------- 449

Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-------THHQLAGATVESG 917
                     GS++ GKV +  D G VV  +E +++ GFI        H +     +  G
Sbjct: 450 ----------GSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEG 499

Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
             ++A I+++   +R + LS+K V  D      SN + ++
Sbjct: 500 QEVEARIINIDAKKRSITLSIKAVDEDNTAAGKSNYKVEQ 539



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            + G V N+T  GCF+ L   ++  V  S +  ++  V +P K   IG+ +   VL ++  
Sbjct: 280  LMGTVTNITDYGCFVKLKEGIEGLVHTSEMDWTNKNV-NPHKAVSIGQEIEVIVLELDAD 338

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            + R+ + +K       S+ E     N   GD V G+I+ +  +G+FI +E
Sbjct: 339  NHRISLGIKQCRPNPWSEFE----KNYKPGDKVTGKIRSITEFGVFIGLE 384



 Score = 41.6 bits (96), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E +S   +++G VKN+T  G FI L   +D  + ++++S   +  P     IG+ +  +
Sbjct: 186  LEKISEGSVLKGIVKNITDFGAFIDLG-GVDGLLHITDISWSRISHPTDVLSIGQEIDVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            V+  +   +R+ + +K    +      +N  + L VG  ++G +  +  YG F+ ++
Sbjct: 245  VIKFDKEKQRISLGIK----QLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297


>gi|139437094|ref|ZP_01771254.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC
           25986]
 gi|133776741|gb|EBA40561.1| 30S ribosomal protein S1 [Collinsella aerofaciens ATCC 25986]
          Length = 369

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K GM ++G V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 183 SKLKSGMRLQGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEV 241

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T      A++  Y       I  G +TK+   G FV    G++G
Sbjct: 242 LDVDLNRERISLGLKQTTEDPWRALVKKYPVGA---IVEGTVTKLVPFGAFVDLGEGIEG 298

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+      +PS + HVG  V+ ++M      RRI+LS 
Sbjct: 299 LVHISEMANKHVDQPSQVTHVGDKVQVKVMEIDLDRRRISLSM 341



 Score = 43.5 bits (101), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 152/362 (41%), Gaps = 43/362 (11%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T +D   G +V G V+ ++    +V      + + P+  +S  +   P     +G  +  
Sbjct: 8   TITDFDEGDLVNGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRKDANPADIVALGDPIEA 67

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLI--------THGWITKIEKHGC 601
            VL  + K  R+ ++ K+          + Y  A +R+           G + ++ K G 
Sbjct: 68  LVLQKEDKDGRLVLSKKR----------AEYERAWNRIEEKFNSGENVEGEVIEVVKGGL 117

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFM 655
            +    G++GF P S + L    + +S  ++G  ++ R++      +++  SRR+ L   
Sbjct: 118 ILDI--GLRGFLPASLVDLRRVKDLTS--YMGTRIEARVIEMDRNRNNVVLSRRVVLEES 173

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVM 714
            K  R      +K G  + G V  +      V +   G   G I    L+ +H+ H +  
Sbjct: 174 RKAERSEILSKLKSGMRLQGTVSSIVDFGAFVDL---GGIDGLIHISELSWNHVNHPS-- 228

Query: 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNI 772
             V+K G E + ++L +D     + L  K +  +  + L       +P  ++V G V  +
Sbjct: 229 -EVVKVGQEVEVEVLDVDLNRERISLGLKQTTEDPWRALVKK----YPVGAIVEGTVTKL 283

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +  G FV     + G    S+  +      S+  +VG  V+  +++++ +  RI+LS+K 
Sbjct: 284 VPFGAFVDLGEGIEGLVHISEMANKHVDQPSQVTHVGDKVQVKVMEIDLDRRRISLSMKS 343

Query: 833 SC 834
           + 
Sbjct: 344 AA 345


>gi|223039564|ref|ZP_03609851.1| S1 RNA binding domain protein [Campylobacter rectus RM3267]
 gi|222879135|gb|EEF14229.1| S1 RNA binding domain protein [Campylobacter rectus RM3267]
          Length = 556

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 121/552 (21%), Positives = 218/552 (39%), Gaps = 83/552 (15%)

Query: 424 GLLLDIPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
           G+++DI  + V       +   + IS++ +E     E K+K G  ++V I G R  + + 
Sbjct: 39  GIIVDIKDSEVFVNVGKKSEGILDISEIQDE---NGEIKFKVGDTIKVVITGSRGGKPIV 95

Query: 478 T--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
           +    L+    +  + ++++     V   K+I  +  G + Q   GV+   P      F+
Sbjct: 96  SHKKALRKEKVKAYIDSYNEENQD-VFDVKIIGKNKGGFVAQNSDGVEFFLPRSQGG-FK 153

Query: 536 IVKP--GKKFKVGAELVFRVLGVK--SKRITVTHKKTL---VKSKLAILSSYAEATDRLI 588
                 GK FKV      +V+ +    + I V+ KK L    K K   +S+ AE TD  +
Sbjct: 154 DANAVVGKSFKV------KVIKIDKDEQSIIVSRKKLLDEDRKRKREAISAVAENTD--V 205

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G + KI  +G FV    GV G    SE+       P S+Y  G  V  R++      +
Sbjct: 206 IEGVVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGSIYKEGDKVLVRVIKYDNEKK 264

Query: 649 RINLSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            ++LS         E+  D +++G  +   V  + P    V +       G      L  
Sbjct: 265 HLSLSIKAATPDPWEEIKDGLEVGDTIKVTVSNIEPYGAFVDL-------GNDIEGFL-- 315

Query: 707 HLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
           H+   +  K++  P      G E D +++ +D     L +S K  L     +  +     
Sbjct: 316 HISEISWDKNIKNPKDHISEGEELDVEVIEIDANDRRLRVSLKNLLKKPFDEFKA---KF 372

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V ++   G FVR +G + G      A   +       + +G  +   I+ +
Sbjct: 373 KEGDVTKGVVTSVTNFGAFVR-IGAVEGLLHNEDASWDRNDKCKDLFKIGDEIEVKIIKI 431

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           ++   +I+LS K    S   A                           + + F +G ++ 
Sbjct: 432 DANEQKISLSQKDLKQSPVQA---------------------------YAKKFNVGDIVT 464

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV---IQAAILDVAKAERLVDL 936
           GK+ +  DFGV V   ++ D    I    L   + ES ++   I+AAI  + + +  + L
Sbjct: 465 GKIRDIKDFGVFVELGDNVD--ALIRKEDLGNVSAESLNINDNIEAAIAFIDEKKNRIRL 522

Query: 937 SLKTVFIDRFRE 948
           S++ +   + RE
Sbjct: 523 SIRRLARQKERE 534


>gi|269926456|ref|YP_003323079.1| RNA binding S1 domain-containing protein [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790116|gb|ACZ42257.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 431

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 20/184 (10%)

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
           E +AT   K ++ E L+    +++ G +VKG+V ++  FGA V   GG   L  L  +S 
Sbjct: 238 ERIATQERKETSKERLI---EELREGQIVKGRVTSLADFGAFVDI-GGADGLIHLSEISW 293

Query: 534 FEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----IT 589
             I  P +  K G E+   VL +  +     HKK  +  K      +A A +R     I 
Sbjct: 294 GRINHPSEVLKPGDEVDVMVLNIDRE-----HKKIALSMKRTQPEPWATAMERYDVGQIV 348

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +T+I   G FVR  +G++G    SELG        +   VG  ++ R++      RR
Sbjct: 349 EGEVTQIAPFGVFVRLEDGIEGLVHMSELG-------DTKVQVGDKLRLRVIKMDTQRRR 401

Query: 650 INLS 653
           I LS
Sbjct: 402 IGLS 405



 Score = 47.0 bits (110), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            IE+L    IV+G V ++   G F+ +    D  + LS +S G +  P +    G  V   
Sbjct: 254  IEELREGQIVKGRVTSLADFGAFVDIG-GADGLIHLSEISWGRINHPSEVLKPGDEVDVM 312

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            VL+++   K++ +++K    RT  +     +    VG IV G++ ++  +G+F+ +E+
Sbjct: 313  VLNIDREHKKIALSMK----RTQPEPWATAMERYDVGQIVEGEVTQIAPFGVFVRLED 366



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 1043 AISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
            A+S   T     A     YDVG +V+ E+T+I P  + ++   G  G +H++E+ D K  
Sbjct: 324  ALSMKRTQPEPWATAMERYDVGQIVEGEVTQIAPFGVFVRLEDGIEGLVHMSELGDTKVQ 383

Query: 1103 VVENL 1107
            V + L
Sbjct: 384  VGDKL 388


>gi|257784765|ref|YP_003179982.1| RNA binding S1 domain-containing protein [Atopobium parvulum DSM
           20469]
 gi|257473272|gb|ACV51391.1| RNA binding S1 domain protein [Atopobium parvulum DSM 20469]
          Length = 418

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL V  
Sbjct: 207 GMKLKGTVSSIVEFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDL 265

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +RI++  K+T       ++S Y    D +I  G +TK+   G FV   NGV+G    S
Sbjct: 266 NRERISLGLKQTSEDPWRVLVSKYP--VDAII-EGTVTKLVTFGAFVDLGNGVEGLVHIS 322

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           E+       PS +  VG VV+ ++M      RRI+LS 
Sbjct: 323 EMAKQHVTAPSQVCKVGDVVQVKVMEIDLDRRRISLSM 360



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 143/368 (38%), Gaps = 56/368 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           + +G + KIE+    V      +G  P  EL +     P+ +  +G+ V+  ++      
Sbjct: 36  LVNGTVVKIERDEVLVDIGYKSEGVIPARELSIRKDVNPAEIISLGEDVEALVLQKEDKE 95

Query: 648 RRINLS----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            R+ LS       +  +  ED     G  V G V  V    +++ +  +G+   ++    
Sbjct: 96  GRLVLSKKRAEYERAWKAVEDKF-NAGETVEGEVIEVVKGGLILDIGLRGFLPASLVDLR 154

Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
               L     M + I+      +++ +D   +N++LS +  L  + +    D    +   
Sbjct: 155 RVKDL--GAFMGTRIEA-----RVIEMDRNRNNVVLSRRIVLEEARKAERQDILGKLQVG 207

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             + G V +I+E G FV  LG + G    S+         S+   VGQ V   +LDV+  
Sbjct: 208 MKLKGTVSSIVEFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLN 266

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIE 879
             RI+L LKQ+                              SE  W   V  + + ++IE
Sbjct: 267 RERISLGLKQT------------------------------SEDPWRVLVSKYPVDAIIE 296

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAER 932
           G V +   FG  V     + V G +   ++A   V +       G V+Q  ++++    R
Sbjct: 297 GTVTKLVTFGAFVDL--GNGVEGLVHISEMAKQHVTAPSQVCKVGDVVQVKVMEIDLDRR 354

Query: 933 LVDLSLKT 940
            + LS+K 
Sbjct: 355 RISLSMKA 362


>gi|119897363|ref|YP_932576.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
 gi|119669776|emb|CAL93689.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
          Length = 568

 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 149/351 (42%), Gaps = 32/351 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++K G VVKG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +VL
Sbjct: 196 NLKEGTVVKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLNVGDEIEAKVL 254

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +  R+++  K+      + I   Y + T RL   G +T I  +G FV    G++G 
Sbjct: 255 KFDQEKNRVSLGLKQLGEDPWVGISRRYPQGT-RLF--GKVTNITDYGAFVEVEQGIEGL 311

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KL 669
              SE+   +    P+ +  +G  V+  I+      RRI+L      +   +D  +  K 
Sbjct: 312 VHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCASNPWDDFAINHKK 371

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL 727
           G  V G +  +T   V +     G   G     HL+D     +   +V   K G E + +
Sbjct: 372 GDKVRGQIKSITDFGVFI-----GLDGGIDGLVHLSDLSWSESGEDAVRKFKKGDEVEAV 426

Query: 728 -LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVR 780
            L +D E   + L  K        QL  D      A+H   NS+V G V ++   G  + 
Sbjct: 427 VLAIDVERERISLGIK--------QLEGDPFTNFIATH-EKNSLVRGTVKSVDARGAVIG 477

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G+   S+A   +  DL+     G  +   I++V+ +T  I LS++
Sbjct: 478 LGDEVEGYLRASEAAPHRVDDLTTMLKEGDELELMIINVDRKTRSINLSIR 528



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 111/261 (42%), Gaps = 31/261 (11%)

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMY----HVGQVVKC-RIMSSIPASRRINLSF 654
           G      N ++ F P S + + P  + +S Y    +  +V+K  R  +++  SRR  L  
Sbjct: 126 GGLTVMTNSIRAFLPGSLVDMRP-VKDTSPYEGKEYEFKVIKLDRKRNNVVVSRRAVLEE 184

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATV 713
            M   R    + +K G++V GVV  +T     V +   G   G +    LA   + H + 
Sbjct: 185 SMGEERQKLLENLKEGTVVKGVVKNITDYGAFVDL---GGIDGLLHITDLAWRRVRHPS- 240

Query: 714 MKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHG 767
              V+  G E + ++L  D E + + L  K        QL  D     S  +P    + G
Sbjct: 241 --EVLNVGDEIEAKVLKFDQEKNRVSLGLK--------QLGEDPWVGISRRYPQGTRLFG 290

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGR 825
            V NI + G FV     + G    S+ +D    ++  +K   +G  V   IL+++ +  R
Sbjct: 291 KVTNITDYGAFVEVEQGIEGLVHVSE-MDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRR 349

Query: 826 ITLSLKQSCCSSTDASFMQEH 846
           I+L +KQ C S+    F   H
Sbjct: 350 ISLGMKQ-CASNPWDDFAINH 369



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L    +V+G VKN+T  G F+ L   +D  + +++L+   V  P +   +G  +  +
Sbjct: 194  LENLKEGTVVKGVVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEVLNVGDEIEAK 252

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +    RV + LK    +      +        G  + G++  +  YG F+ +E
Sbjct: 253  VLKFDQEKNRVSLGLK----QLGEDPWVGISRRYPQGTRLFGKVTNITDYGAFVEVE 305



 Score = 40.4 bits (93), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 150/389 (38%), Gaps = 55/389 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
           LE ++EG V+   VK+I D+G  +  G     G L   +LA      V+    +  V   
Sbjct: 194 LENLKEGTVVKGVVKNITDYGAFVDLG--GIDGLLHITDLAWRR---VRHPSEVLNVGDE 248

Query: 287 IDRTRKVVYLSSDPDTVS---KCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFL 342
           I+   KV+    + + VS   K + +D   + I    P G  +  +V +I + G  +   
Sbjct: 249 IE--AKVLKFDQEKNRVSLGLKQLGED-PWVGISRRYPQGTRLFGKVTNITDYGAFVEVE 305

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY--- 394
               G V +  +  T    +         +V   IL +D   R + L +     NP+   
Sbjct: 306 QGIEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCASNPWDDF 365

Query: 395 -LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
            + H +      ++  I D    + +D G+  L+ +          ++ S+  E+ VRK 
Sbjct: 366 AINHKKGDKVRGQIKSITDFGVFIGLDGGIDGLVHLSD--------LSWSESGEDAVRKF 417

Query: 454 EKKYKEGSCV------RVRI-LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           +K  +  + V      R RI LG + LEG          F   + TH   +   +V+G V
Sbjct: 418 KKGDEVEAVVLAIDVERERISLGIKQLEG--------DPFTNFIATH---EKNSLVRGTV 466

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK------- 559
            +VD+ GA++     V+        +   +       K G EL   ++ V  K       
Sbjct: 467 KSVDARGAVIGLGDEVEGYLRASEAAPHRVDDLTTMLKEGDELELMIINVDRKTRSINLS 526

Query: 560 -RITVTHKKTLVKSKLAILSSYAEATDRL 587
            R     ++T    KLA  SS A  T  L
Sbjct: 527 IRAKDQAEQTEAMQKLASESSAASGTTNL 555


>gi|418029506|ref|ZP_12668044.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
           subsp. bulgaricus CNCM I-1632]
 gi|354689812|gb|EHE89785.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
           subsp. bulgaricus CNCM I-1632]
          Length = 401

 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEEE--REQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 114/248 (45%), Gaps = 38/248 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKTIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
             +   G  V IG  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  TNF--GSFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---VGQDVKVKVIGI 253

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +                  P    +    L+   +++G VK++T
Sbjct: 254  DND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLT 293

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            + G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P  +R+ +++K  
Sbjct: 294  NFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQV 353

Query: 1451 DSRTASQS 1458
            D   AS S
Sbjct: 354  DPENASSS 361



 Score = 47.0 bits (110), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 44/214 (20%)

Query: 1306 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1360
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1361 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1394
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              Q+     S+L+ GD++ G++K + ++G F+ +
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEV 301



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 145/366 (39%), Gaps = 55/366 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D          +G  +K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTIKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F Q    L E                       G VIEG+V    +FG   +F E +D
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFG---AFVEVAD 303

Query: 900 -VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N 
Sbjct: 304 GIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSND 363

Query: 952 NRQAQK 957
             +A++
Sbjct: 364 RPRARR 369


>gi|115315499|ref|YP_764222.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|169656779|ref|YP_001429450.2| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|115130398|gb|ABI83585.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|164551847|gb|ABU62494.2| ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 574

 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 149/350 (42%), Gaps = 31/350 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G V+KG V  +  FGA +   GGV  L  +  +S   I  P     +G E+  +V+ 
Sbjct: 207 ISEGSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIK 265

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +RI++  K+      L I +        +   G +T I  +GCFV+   G++G  
Sbjct: 266 FDKEKQRISLGIKQLGEDPWLNIANELPVCAKLM---GTVTNITDYGCFVKLKEGIEGLV 322

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLG 670
             SE+   +    P     +GQ V+  ++     + RI+L     +P   SE +   K G
Sbjct: 323 HTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPNPWSEFEKNYKPG 382

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
             V+G +  +T   V +     G   G     H++D   ++       +K G E + +LV
Sbjct: 383 DKVTGKIRSITEFGVFI-----GLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLV 437

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPN-SVVHGYVCNIIETGCFVRF-- 781
            ++ +   + LS K        QL  D      +IHP  S+V G V  + + G  V    
Sbjct: 438 SVNTDLERIALSMK--------QLSEDPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDE 489

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + GF   S+       D+      GQ V + I++++++   ITLS+K
Sbjct: 490 DNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSITLSIK 539



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 172/430 (40%), Gaps = 61/430 (14%)

Query: 548 ELVFRVLGVKSKR--ITVTHKKTLVKS----KLAILSSYAEATDRLITHGWITKIEKHGC 601
           ++  +V+ + +KR  I V+ K  + ++    + A+L   +E +   +  G +  I   G 
Sbjct: 169 DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGS---VLKGIVKNITDFGA 225

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
           F+    GV G    +++       P+ +  +GQ +  +++      +RI+L       ++
Sbjct: 226 FIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGI----KQL 280

Query: 662 SEDDLVKLG------SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
            ED  + +       + + G V  +T      +V  K   +G + T  +    ++    K
Sbjct: 281 GEDPWLNIANELPVCAKLMGTVTNITDYGC--FVKLKEGIEGLVHTSEMDWTNKNVNPHK 338

Query: 716 SVIKPGYEFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
           +V   G E + + L LD ++  + L  K    N   +      +  P   V G + +I E
Sbjct: 339 AV-SIGQEVEVIVLELDADNHRISLGIKQCRPNPWSEFEK---NYKPGDKVTGKIRSITE 394

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            G F+   G + G    S       A   K    G  V + ++ VN++  RI LS+KQ  
Sbjct: 395 FGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLVSVNTDLERIALSMKQ-L 453

Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
                 +F+  H                            GS++ GKV +  D G VV  
Sbjct: 454 SEDPFKNFINIHPK--------------------------GSLVTGKVTKVQDNGAVVML 487

Query: 895 EEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
           +E +++ GFI        H +     +  G  ++A I+++   +R + LS+K V  D   
Sbjct: 488 DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSITLSIKAVDEDNTA 547

Query: 948 EANSNRQAQK 957
              SN + ++
Sbjct: 548 AGKSNYKVEQ 557



 Score = 43.9 bits (102), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            + G V N+T  GCF+ L   ++  V  S +  ++  V +P K   IG+ V   VL ++  
Sbjct: 298  LMGTVTNITDYGCFVKLKEGIEGLVHTSEMDWTNKNV-NPHKAVSIGQEVEVIVLELDAD 356

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            + R+ + +K       S+ E     N   GD V G+I+ +  +G+FI +E
Sbjct: 357  NHRISLGIKQCRPNPWSEFE----KNYKPGDKVTGKIRSITEFGVFIGLE 402


>gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1]
          Length = 403

 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 10/179 (5%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G V +G V +V  FGA V   GG   L  L  +S   I  PG+  K G ++   V
Sbjct: 232 SALKEGDVREGIVTSVCDFGAFVDI-GGADGLVHLSEISWSRIKHPGEVLKPGDKVQVYV 290

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L +  + KRI ++ K+T  +    +   Y       +  G +T++   G FVR  +GV+G
Sbjct: 291 LSIDNERKRIALSLKRTQHEPWATVGERYQIGQ---MVEGVVTQLAPFGAFVRIEDGVEG 347

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
               SE+G      P  +   G VV+ RI+   PA +RI LS  M+P   S+D  V  G
Sbjct: 348 LIHVSEMGDGRVQHPRDVLQEGDVVQARIIRIDPARKRIGLS--MRPP--SDDTEVAAG 402



 Score = 40.8 bits (94), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G V  +   G F+ +   ++  + +S + DG V+ P      G +V  R++ ++P  
Sbjct: 324  MVEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEGDVVQARIIRIDPAR 383

Query: 1441 KRVEVTLK--TSDSRTAS 1456
            KR+ ++++  + D+  A+
Sbjct: 384  KRIGLSMRPPSDDTEVAA 401


>gi|89257160|ref|YP_514522.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           LVS]
 gi|254366882|ref|ZP_04982920.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
 gi|290953358|ref|ZP_06557979.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           URFT1]
 gi|422939398|ref|YP_007012545.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FSC200]
 gi|89144991|emb|CAJ80351.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           LVS]
 gi|134252710|gb|EBA51804.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
 gi|407294549|gb|AFT93455.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FSC200]
          Length = 556

 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 149/350 (42%), Gaps = 31/350 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G V+KG V  +  FGA +   GGV  L  +  +S   I  P     +G E+  +V+ 
Sbjct: 189 ISEGSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +RI++  K+      L I +        +   G +T I  +GCFV+   G++G  
Sbjct: 248 FDKEKQRISLGIKQLGEDPWLNIANELPVCAKLM---GTVTNITDYGCFVKLKEGIEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLG 670
             SE+   +    P     +GQ V+  ++     + RI+L     +P   SE +   K G
Sbjct: 305 HTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPNPWSEFEKNYKPG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
             V+G +  +T   V +     G   G     H++D   ++       +K G E + +LV
Sbjct: 365 DKVTGKIRSITEFGVFI-----GLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLV 419

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPN-SVVHGYVCNIIETGCFVRF-- 781
            ++ +   + LS K        QL  D      +IHP  S+V G V  + + G  V    
Sbjct: 420 SVNTDLERIALSMK--------QLSEDPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDE 471

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + GF   S+       D+      GQ V + I++++++   ITLS+K
Sbjct: 472 DNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSITLSIK 521



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 172/430 (40%), Gaps = 61/430 (14%)

Query: 548 ELVFRVLGVKSKR--ITVTHKKTLVKS----KLAILSSYAEATDRLITHGWITKIEKHGC 601
           ++  +V+ + +KR  I V+ K  + ++    + A+L   +E +   +  G +  I   G 
Sbjct: 151 DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGS---VLKGIVKNITDFGA 207

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
           F+    GV G    +++       P+ +  +GQ +  +++      +RI+L       ++
Sbjct: 208 FIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGI----KQL 262

Query: 662 SEDDLVKLG------SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
            ED  + +       + + G V  +T      +V  K   +G + T  +    ++    K
Sbjct: 263 GEDPWLNIANELPVCAKLMGTVTNITDYGC--FVKLKEGIEGLVHTSEMDWTNKNVNPHK 320

Query: 716 SVIKPGYEFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
           +V   G E + + L LD ++  + L  K    N   +      +  P   V G + +I E
Sbjct: 321 AV-SIGQEVEVIVLELDADNHRISLGIKQCRPNPWSEFEK---NYKPGDKVTGKIRSITE 376

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            G F+   G + G    S       A   K    G  V + ++ VN++  RI LS+KQ  
Sbjct: 377 FGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLVSVNTDLERIALSMKQ-L 435

Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
                 +F+  H                            GS++ GKV +  D G VV  
Sbjct: 436 SEDPFKNFINIHPK--------------------------GSLVTGKVTKVQDNGAVVML 469

Query: 895 EEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
           +E +++ GFI        H +     +  G  ++A I+++   +R + LS+K V  D   
Sbjct: 470 DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSITLSIKAVDEDNTA 529

Query: 948 EANSNRQAQK 957
              SN + ++
Sbjct: 530 AGKSNYKVEQ 539



 Score = 43.9 bits (102), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            + G V N+T  GCF+ L   ++  V  S +  ++  V +P K   IG+ V   VL ++  
Sbjct: 280  LMGTVTNITDYGCFVKLKEGIEGLVHTSEMDWTNKNV-NPHKAVSIGQEVEVIVLELDAD 338

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            + R+ + +K       S+ E     N   GD V G+I+ +  +G+FI +E
Sbjct: 339  NHRISLGIKQCRPNPWSEFE----KNYKPGDKVTGKIRSITEFGVFIGLE 384


>gi|258545130|ref|ZP_05705364.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826]
 gi|258519649|gb|EEV88508.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826]
          Length = 556

 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 143/354 (40%), Gaps = 20/354 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G VVK  V  +  +GA +   GGV  L  +  M+   I  P +   +G E+  +VL
Sbjct: 187 NLQEGDVVKAVVKNLTDYGAFLDI-GGVDGLLHITDMAWKRIKYPSEVVNIGDEVEVKVL 245

Query: 555 GVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               +R  V+   K L       ++       +  T G +T I  +G FV   +GV+G  
Sbjct: 246 KFDRERARVSLGLKQLGSDPWGDIAQRYPVNSQ--TRGKVTNIADYGSFVEIEDGVEGLV 303

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKL 669
             SE+   +    P     VGQ V   I+   P  RRI+L        P +  E    K 
Sbjct: 304 HVSEMDWTNKNVNPRKFVAVGQEVDVMILEIDPERRRISLGMKQCQPNPWQEFEKKFNK- 362

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  V G +  +T   V +     G   G     HL+D        ++V   + G E +  
Sbjct: 363 GDRVKGQIKSITDFGVFI-----GLEGGIDGLIHLSDLSWDENGEEAVRHYQKGQEVEAV 417

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K     S     + AS     SVV G V  + E    ++    + 
Sbjct: 418 ILAIDAERERISLGVKQL---SQDTFSAFASAHGRGSVVKGNVVEVDERQAVIKLSDDIN 474

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
           G    S+A   +  DL+K   VG  V + +++V+ +    +LS++    +   A
Sbjct: 475 GILKASEAAIERVEDLTKLLSVGDEVEAKVINVDRKHKTFSLSVRAKDVADEKA 528



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 100/484 (20%), Positives = 183/484 (37%), Gaps = 98/484 (20%)

Query: 491 FTHSDVKPGMV---VKGKVIAVDSFGAIVQFPGGVKALCPL--PHMSEFEIVKPGKKFKV 545
           F  S+   G++   VKG    VD  G     PG +  + P+  P +SE            
Sbjct: 101 FNDSETITGIISGRVKGG-FTVDVEGVKAFLPGSLVDVRPVKDPALSE------------ 147

Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSS-YAEATDRL--------ITHGWITKI 596
           G E+ F+++ +  KR        +V S+ A+L + Y    D +        +    +  +
Sbjct: 148 GKEIDFKIIKLDQKR------NNIVISRRAVLENEYKAERDEVLKNLQEGDVVKAVVKNL 201

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
             +G F+    GV G    +++       PS + ++G  V+ +++       R++L    
Sbjct: 202 TDYGAFLDI-GGVDGLLHITDMAWKRIKYPSEVVNIGDEVEVKVLKFDRERARVSLG--- 257

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGT-IPTEHLADHLEHATVM 714
                    L +LGS   G +    P N+     +      G+ +  E   + L H + M
Sbjct: 258 ---------LKQLGSDPWGDIAQRYPVNSQTRGKVTNIADYGSFVEIEDGVEGLVHVSEM 308

Query: 715 ---------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
                    +  +  G E D  +L +D E   + L  K    N  Q+        +    
Sbjct: 309 DWTNKNVNPRKFVAVGQEVDVMILEIDPERRRISLGMKQCQPNPWQEFEK---KFNKGDR 365

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           V G + +I + G F+   G + G    S  + D    +  + Y  GQ V + IL +++E 
Sbjct: 366 VKGQIKSITDFGVFIGLEGGIDGLIHLSDLSWDENGEEAVRHYQKGQEVEAVILAIDAER 425

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
            RI+L +KQ     T ++F   H                            GSV++G V 
Sbjct: 426 ERISLGVKQ-LSQDTFSAFASAHGR--------------------------GSVVKGNVV 458

Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDL 936
           E ++   V+   +  D+ G +   + A   VE        G  ++A +++V +  +   L
Sbjct: 459 EVDERQAVIKLSD--DINGILKASEAAIERVEDLTKLLSVGDEVEAKVINVDRKHKTFSL 516

Query: 937 SLKT 940
           S++ 
Sbjct: 517 SVRA 520



 Score = 44.3 bits (103), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 111/489 (22%), Positives = 190/489 (38%), Gaps = 78/489 (15%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           A  FE  + T +++KPG ++K +V+ ++     V    G+K+   +P  ++F        
Sbjct: 5   AELFEKSIET-AELKPGSIIKAEVVQINK--DFVVLNAGLKSEGFVP-AAQFTDENGNLT 60

Query: 543 FKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
             VG   E+    L        ++H+K        +L    +  D     G I+   K G
Sbjct: 61  VAVGDTVEVALEALEDGFGETKISHEKAQRIRTWEVLEQ--KFNDSETITGIISGRVK-G 117

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSF 654
            F     GV+ F P S + + P  +P+     G+ +  +I+      ++I  SRR  L  
Sbjct: 118 GFTVDVEGVKAFLPGSLVDVRPVKDPA--LSEGKEIDFKIIKLDQKRNNIVISRRAVLEN 175

Query: 655 MMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
             K  R   D+++K    G +V  VV  +T     + +   G   G +    +A   +  
Sbjct: 176 EYKAER---DEVLKNLQEGDVVKAVVKNLTDYGAFLDI---GGVDGLLHITDMA--WKRI 227

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVV 765
                V+  G E + ++L  D E + + L  K        QL SD     A     NS  
Sbjct: 228 KYPSEVVNIGDEVEVKVLKFDRERARVSLGLK--------QLGSDPWGDIAQRYPVNSQT 279

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSET 823
            G V NI + G FV     + G    S+ +D    +++  K   VGQ V   IL+++ E 
Sbjct: 280 RGKVTNIADYGSFVEIEDGVEGLVHVSE-MDWTNKNVNPRKFVAVGQEVDVMILEIDPER 338

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
            RI+L +KQ C  +    F ++                          F  G  ++G++ 
Sbjct: 339 RRISLGMKQ-CQPNPWQEFEKK--------------------------FNKGDRVKGQIK 371

Query: 884 ESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
              DFGV +  E       H     +  + + A    + G  ++A IL +      + L 
Sbjct: 372 SITDFGVFIGLEGGIDGLIHLSDLSWDENGEEAVRHYQKGQEVEAVILAIDAERERISLG 431

Query: 938 LKTVFIDRF 946
           +K +  D F
Sbjct: 432 VKQLSQDTF 440



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 148/397 (37%), Gaps = 73/397 (18%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSGIDVKP 276
           L+ +QEG V+ A VK++ D+G  L  G     G L   ++A           N G +V+ 
Sbjct: 185 LKNLQEGDVVKAVVKNLTDYGAFLDIG--GVDGLLHITDMAWKRIKYPSEVVNIGDEVEV 242

Query: 277 GLLLQGVVRSIDRTRKVV-----YLSSDP--DTVSKC-VTKDLKGISIDLLVPGMMVSTR 328
            +L        DR R  V      L SDP  D   +  V    +G              +
Sbjct: 243 KVL------KFDRERARVSLGLKQLGSDPWGDIAQRYPVNSQTRG--------------K 282

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V +I + G  +       G V +  +  T    N +      ++V+  IL +DP  R + 
Sbjct: 283 VTNIADYGSFVEIEDGVEGLVHVSEMDWTNKNVNPRKFVAVGQEVDVMILEIDPERRRIS 342

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+      ++  I D    + ++ G+  L+ +          
Sbjct: 343 LGMKQCQPNPWQEFEKKFNKGDRVKGQIKSITDFGVFIGLEGGIDGLIHLSD-------- 394

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDV 496
           ++  +  EE VR     Y++G  V   IL     R    L    L    F      H   
Sbjct: 395 LSWDENGEEAVR----HYQKGQEVEAVILAIDAERERISLGVKQLSQDTFSAFASAHG-- 448

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
             G VVKG V+ VD   A+++    +  +      +   +    K   VG E+  +V+ V
Sbjct: 449 -RGSVVKGNVVEVDERQAVIKLSDDINGILKASEAAIERVEDLTKLLSVGDEVEAKVINV 507

Query: 557 --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
             K K  +++ +   V  + A++  Y     R  +HG
Sbjct: 508 DRKHKTFSLSVRAKDVADEKAVIQDYT----RKESHG 540



 Score = 40.4 bits (93), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 7/113 (6%)

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSV 1436
            N   +G V N+   G F+ +   ++  V +S +  ++  V +P K   +G+ V   +L +
Sbjct: 276  NSQTRGKVTNIADYGSFVEIEDGVEGLVHVSEMDWTNKNV-NPRKFVAVGQEVDVMILEI 334

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +P  +R+ + +K        + E       + GD V GQIK +  +G+FI +E
Sbjct: 335  DPERRRISLGMKQCQPNPWQEFE----KKFNKGDRVKGQIKSITDFGVFIGLE 383


>gi|451936517|ref|YP_007460371.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium oncopeltii TCC290E]
 gi|451777440|gb|AGF48415.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium oncopeltii TCC290E]
          Length = 570

 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 157/360 (43%), Gaps = 20/360 (5%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+AS  E       ++  G VVKG V  +  +GA +   GG+  L  +  M+   +  P
Sbjct: 182 VLEASMGEERQKLLENLYEGAVVKGVVKNITDYGAFIDL-GGIDGLLHITDMAWRRVRHP 240

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +V  E+  +VL    +  R+++  K+      + +   Y + T RL   G IT + 
Sbjct: 241 SEVLQVCQEIEAKVLKFDQEKNRVSLGVKQLGEDPWVDLARRYPQGT-RLF--GKITNLT 297

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-M 655
            +G FV   +G++G    SE+   +   +P  +  +G+ V+  ++      RRI+L    
Sbjct: 298 DYGAFVEVESGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQ 357

Query: 656 MKPTRVSEDDL-VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHAT 712
            +P    E  +  K G  V G +  +T   V V     G   G     HL+D   +++  
Sbjct: 358 CRPNPWEEFAVNFKKGDKVKGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWMDNGE 412

Query: 713 VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
                +K G E + +++ +D     + L  K    +  Q   S  SH    + VHG V +
Sbjct: 413 ETVRNLKKGDEIEAIVLGIDTAKERISLGVKQLEGDPFQNFVS--SH-DKGATVHGTVKS 469

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +   G  V     + G+   S+   G+  D +    VG S+ + I++V+ +T  I LS+K
Sbjct: 470 VDPKGAIVNLSLDVDGYLRSSEISSGRIEDATSVLKVGDSIEALIINVDRKTRSIQLSVK 529



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFR 552
           K G  VKG + ++  FG  V  PGG+  L    H+S+   +  G    +  K G E+   
Sbjct: 371 KKGDKVKGAIKSITDFGVFVGLPGGIDGLV---HLSDLSWMDNGEETVRNLKKGDEIEAI 427

Query: 553 VLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VLG+ +  +RI++  K+         +SS+ +       HG +  ++  G  V     V 
Sbjct: 428 VLGIDTAKERISLGVKQLEGDPFQNFVSSHDKGA---TVHGTVKSVDPKGAIVNLSLDVD 484

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G+   SE+      + +S+  VG  ++  I++    +R I LS   + T
Sbjct: 485 GYLRSSEISSGRIEDATSVLKVGDSIEALIINVDRKTRSIQLSVKARDT 533


>gi|408420589|ref|YP_006762003.1| 30S ribosomal protein S1 RpsA2 [Desulfobacula toluolica Tol2]
 gi|405107802|emb|CCK81299.1| RpsA2: 30S ribosomal protein S1 [Desulfobacula toluolica Tol2]
          Length = 616

 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 151/351 (43%), Gaps = 32/351 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V++G V  +  +G  V   GGV  L  +  +S   +  P + F +G ++  ++L 
Sbjct: 227 IEDGKVMEGIVKNITEYGVFVDL-GGVDGLLHITDISWGRVKHPSELFSIGDKINVKILS 285

Query: 556 --VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
             ++ +R+++  K+         +  Y    D  IT G +  +  +G F+    GV+G  
Sbjct: 286 FDLEKERVSLGMKQLTPDPWTTAVDKYP--VDSKIT-GKVVSLTDYGAFIELEEGVEGLI 342

Query: 614 PRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKL 669
             SE+        PS M  VG++++  ++   P +RRI+L        P  V       +
Sbjct: 343 HVSEMSWTRKIRHPSQMVTVGEIIEAVVLDLKPDNRRISLGIKQTVDNPWEVISQKY-PV 401

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD---- 725
           G+++ G +  +T   + +     G         H++D     +  K +  P   +     
Sbjct: 402 GTIIEGKIKNITEFGLFI-----GIDDDIDGLVHISD----ISWTKRIKHPSEVYKKSDT 452

Query: 726 -QLLVLDNESSNLLLSAKYSL-INSAQQLP--SDASHIHPNSVVHGYVCNIIETGCFVRF 781
            Q +VLD + +N     ++SL I   Q  P  S +        + G + N+ + G FV  
Sbjct: 453 IQAVVLDIDKAN----ERFSLGIKQTQADPWESVSQRYEVGKEISGVITNLTDFGVFVEL 508

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
              + G    S+          + Y +G+++ + ++++NS+  RI LS+K+
Sbjct: 509 EEGIEGLVHVSEISKENVKSPKEHYQIGETITAKVMNINSDERRIGLSIKR 559



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGVK 557
           G +++GK+  +  FG  +     +  L  +  +S  + +K P + +K    +   VL + 
Sbjct: 402 GTIIEGKIKNITEFGLFIGIDDDIDGLVHISDISWTKRIKHPSEVYKKSDTIQAVVLDID 461

Query: 558 --SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
             ++R ++  K+T      ++   Y    +     G IT +   G FV    G++G    
Sbjct: 462 KANERFSLGIKQTQADPWESVSQRYEVGKE---ISGVITNLTDFGVFVELEEGIEGLVHV 518

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           SE+  +    P   Y +G+ +  ++M+     RRI LS      R+ EDD
Sbjct: 519 SEISKENVKSPKEHYQIGETITAKVMNINSDERRIGLSI----KRLEEDD 564



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 110/525 (20%), Positives = 215/525 (40%), Gaps = 96/525 (18%)

Query: 548  ELVFRVLGVKSKRITVTHKKTL-VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
            E++  V   + + + ++H+K   VK   AI   Y    D     G IT   K G  V   
Sbjct: 108  EVMIEVWDEEEETVLLSHEKAKKVKVWDAIKDIY---DDDGTIEGVITSRVKGGFSVDI- 163

Query: 607  NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTR 660
             G+  F P S+  L P      M  V Q    +I+      ++I  SRR+ L  +    R
Sbjct: 164  -GLLAFLPGSQADLRPIRNMDEM--VNQTYTFKILKYNKKRNNIVLSRRVLLEAVRDKLR 220

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKS 716
             +  + ++ G ++ G+V  +T   V V +   G   G +   H+ D     ++H + + S
Sbjct: 221  STTLEAIEDGKVMEGIVKNITEYGVFVDL---GGVDGLL---HITDISWGRVKHPSELFS 274

Query: 717  VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHP-NSVVHGYVC 770
            +   G + + ++L  D E   + L  K        QL  D    A   +P +S + G V 
Sbjct: 275  I---GDKINVKILSFDLEKERVSLGMK--------QLTPDPWTTAVDKYPVDSKITGKVV 323

Query: 771  NIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            ++ + G F+     + G    S+    ++    S+   VG+ + + +LD+  +  RI+L 
Sbjct: 324  SLTDYGAFIELEEGVEGLIHVSEMSWTRKIRHPSQMVTVGEIIEAVVLDLKPDNRRISLG 383

Query: 830  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
            +KQ+  +  +        ++ +K                   + +G++IEGK+    +FG
Sbjct: 384  IKQTVDNPWE--------VISQK-------------------YPVGTIIEGKIKNITEFG 416

Query: 890  VVVSFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            + +  ++  D+ G +    ++            +    IQA +LD+ KA     L +K  
Sbjct: 417  LFIGIDD--DIDGLVHISDISWTKRIKHPSEVYKKSDTIQAVVLDIDKANERFSLGIKQT 474

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
              D + E+ S R                V + ++ ++  + +  + + L E    + + S
Sbjct: 475  QADPW-ESVSQRYE--------------VGKEISGVITNLTDFGVFVELEEGIEGLVHVS 519

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
                   K P++ +  G+++ A VM +  +S   R+ L +K + E
Sbjct: 520  EISKENVKSPKEHYQIGETITAKVMNI--NSDERRIGLSIKRLEE 562



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 12/122 (9%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            LE IED     +++G VKN+T  G F+ L   +D  + ++++S G V+ P + F IG  +
Sbjct: 224  LEAIED---GKVMEGIVKNITEYGVFVDLG-GVDGLLHITDISWGRVKHPSELFSIGDKI 279

Query: 1430 AGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
              ++LS +   +RV + +K  T D  T +      +    V   + G++  +  YG FI 
Sbjct: 280  NVKILSFDLEKERVSLGMKQLTPDPWTTA------VDKYPVDSKITGKVVSLTDYGAFIE 333

Query: 1488 IE 1489
            +E
Sbjct: 334  LE 335



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 7/111 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G V ++T  G FI L   ++  + +S +S    +  P +   +G+++   VL ++P +
Sbjct: 318  ITGKVVSLTDYGAFIELEEGVEGLIHVSEMSWTRKIRHPSQMVTVGEIIEAVVLDLKPDN 377

Query: 1441 KRVEVTLK-TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            +R+ + +K T D+     S+        VG I+ G+IK +  +GLFI I++
Sbjct: 378  RRISLGIKQTVDNPWEVISQ-----KYPVGTIIEGKIKNITEFGLFIGIDD 423



 Score = 40.4 bits (93), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 40/67 (59%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            + G + N+T  G F+ L   ++  V +S +S   V+SP++ + IG+ +  +V+++    +
Sbjct: 492  ISGVITNLTDFGVFVELEEGIEGLVHVSEISKENVKSPKEHYQIGETITAKVMNINSDER 551

Query: 1442 RVEVTLK 1448
            R+ +++K
Sbjct: 552  RIGLSIK 558


>gi|384262600|ref|YP_005417787.1| SSU ribosomal protein S1P [Rhodospirillum photometricum DSM 122]
 gi|378403701|emb|CCG08817.1| SSU ribosomal protein S1P [Rhodospirillum photometricum DSM 122]
          Length = 572

 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 202/505 (40%), Gaps = 97/505 (19%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMY---HVGQVVKC-RIMSSIPASRRINLSFM 655
            G F    NG   F P S++ + P  + S +     V Q++K  R   +I  SRR  L   
Sbjct: 129  GGFTVDLNGAIAFLPGSQVDIRPVRDISPLLGQPQVFQILKMDRARGNIVVSRRAVLEET 188

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLAD 706
                R    + +K G ++ GVV  +T     V         +V    + +   PTE LA 
Sbjct: 189  RAEERSKLMETLKEGQILDGVVKNITDYGAFVDLGGVDGLLHVTDISWKRINHPTEALA- 247

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHP 761
                   +   +K      Q++  + E+  + L  K        QL +D     A+    
Sbjct: 248  -------IGQTVKV-----QVIRFNPETQRISLGMK--------QLEADPWDGVAAKYPV 287

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVN 820
             +   G V NI + G FV     + G    S+ +   +     K     Q V   ILDV+
Sbjct: 288  QTRFLGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMILDVD 347

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
             +  RI+L LKQ+  S+  ASF++ H                           IG+ +EG
Sbjct: 348  PDKRRISLGLKQTM-SNPWASFLETH--------------------------PIGTEVEG 380

Query: 881  KVHESNDFGVVVSFEEHSDVYGFITHHQL--------AGATVESGSVIQAAILDVAKAER 932
            ++    +FG+ +      D+ G I    L        A    + G V++A +LDV   + 
Sbjct: 381  EIKNITEFGLFIGL--TGDIDGMIHLSDLDWNRPGDEAVKDYKKGDVVRAKVLDVDIEKE 438

Query: 933  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 992
             + L +K +  D +REA +               +L  +Q V+ +V +V+EN + + +  
Sbjct: 439  RISLGVKQLGEDPYREATA---------------ELRKNQIVSCVVTLVQENGIEVDV-- 481

Query: 993  YNHSIGYASVSDYNTQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
             N +IG+   SD   ++  Q+  +F  G ++ A V  +  S+    L +  + + E + +
Sbjct: 482  -NGAIGFIRKSDLARERGDQRPERFSVGDTLDAKVTNIDKSNRRMTLSIKAREMDEEKQA 540

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIK 1075
             ++     S   +G ++ A + + +
Sbjct: 541  MAEYGSADSGASLGDILGAALKQAQ 565



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 151/406 (37%), Gaps = 82/406 (20%)

Query: 447 EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           EE   +LEK + +G  VR  I                         HS VK G  V    
Sbjct: 103 EEAWNELEKSFTDGQRVRGTI-------------------------HSRVKGGFTV---- 133

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVT 564
              D  GAI   PG    + P+  +S            +G   VF++L +   R  I V+
Sbjct: 134 ---DLNGAIAFLPGSQVDIRPVRDISPL----------LGQPQVFQILKMDRARGNIVVS 180

Query: 565 HKKTLVKSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 623
            +  L +++    S   E   +  I  G +  I  +G FV    GV G    +++     
Sbjct: 181 RRAVLEETRAEERSKLMETLKEGQILDGVVKNITDYGAFVDL-GGVDGLLHVTDISWKRI 239

Query: 624 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD 678
             P+    +GQ VK +++   P ++RI+L   MK       D V          +  V +
Sbjct: 240 NHPTEALAIGQTVKVQVIRFNPETQRISLG--MKQLEADPWDGVAAKYPVQTRFLGRVTN 297

Query: 679 VVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 729
           +    A V         V+V    ++K  +    +    +   VM            +L 
Sbjct: 298 ITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVM------------ILD 345

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGF 788
           +D +   + L  K ++ N            HP  + V G + NI E G F+   G + G 
Sbjct: 346 VDPDKRRISLGLKQTMSNPWASF----LETHPIGTEVEGEIKNITEFGLFIGLTGDIDGM 401

Query: 789 APRSKAVDGQRA--DLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
              S  +D  R   +  K Y  G  VR+ +LDV+ E  RI+L +KQ
Sbjct: 402 IHLSD-LDWNRPGDEAVKDYKKGDVVRAKVLDVDIEKERISLGVKQ 446



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 21/187 (11%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVL 554
           G  V+G++  +  FG  +   G +  +    H+S+ +  +PG    K +K G  +  +VL
Sbjct: 375 GTEVEGEIKNITEFGLFIGLTGDIDGMI---HLSDLDWNRPGDEAVKDYKKGDVVRAKVL 431

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
            V  + +RI++  K+            Y EAT  L    I    +T ++++G  V   NG
Sbjct: 432 DVDIEKERISLGVKQLGE-------DPYREATAELRKNQIVSCVVTLVQENGIEVDV-NG 483

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
             GF  +S+L  + G +    + VG  +  ++ +   ++RR+ LS   +     +  + +
Sbjct: 484 AIGFIRKSDLARERGDQRPERFSVGDTLDAKVTNIDKSNRRMTLSIKAREMDEEKQAMAE 543

Query: 669 LGSLVSG 675
            GS  SG
Sbjct: 544 YGSADSG 550



 Score = 41.6 bits (96), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 74/166 (44%), Gaps = 18/166 (10%)

Query: 1324 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1383
            + +V +I +  R   ++ +S R+ L+   +   S L             +E L    I+ 
Sbjct: 161  QPQVFQILKMDRARGNIVVSRRAVLEETRAEERSKL-------------METLKEGQILD 207

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443
            G VKN+T  G F+ L   +D  + ++++S   +  P +   IG+ V  +V+   P ++R+
Sbjct: 208  GVVKNITDYGAFVDLG-GVDGLLHVTDISWKRINHPTEALAIGQTVKVQVIRFNPETQRI 266

Query: 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             + +K  ++           +   V    +G++  +  YG F+ +E
Sbjct: 267  SLGMKQLEADPWD----GVAAKYPVQTRFLGRVTNITDYGAFVELE 308


>gi|310821587|ref|YP_003953945.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
 gi|309394659|gb|ADO72118.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 571

 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 148/360 (41%), Gaps = 28/360 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  ++K G V+KG V  +  +GA +   GG+  L  +  MS   I  P + F VG E+  
Sbjct: 201 TLKNLKEGAVLKGVVKNLTDYGAFIDL-GGIDGLLHITDMSWGRIGHPSEMFNVGDEVRV 259

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL      +R+++  K+            Y   T      G +  I  +G F+    GV
Sbjct: 260 VVLKFDPAQERVSLGLKQIQEDPWHRADEKYPVGTR---VRGKVVSITDYGAFIEIEQGV 316

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
           +G    SE+      + PS +  VGQ V+  ++   P ++RI L        P  + ED 
Sbjct: 317 EGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQIEQNPWTLLEDK 376

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKP 720
              +GS++ G +  VT   + V     G  +G     H++D      ++H      + K 
Sbjct: 377 Y-PIGSVIKGQIRNVTDFGIFV-----GVEEGVDGLVHVSDISWTQRIKHPG---ELYKK 427

Query: 721 GYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E + +++ +D E+    L  K    +  + L   +      S V G V  + + G FV
Sbjct: 428 GDEVEAVMLNIDVENERFSLGIKQLQPDPWETL---SERTPVGSRVKGKVTKVTDFGAFV 484

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                + G    S+  + +  +        Q V   I+D+N++  ++ LS+K      +D
Sbjct: 485 EIEPGIEGLVHVSELREERVENPRDVVQEAQEVDVKIIDINTQDRKVALSIKALIGEGSD 544



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L    +++G VKN+T  G FI L   +D  + ++++S G +  P + F +G  V 
Sbjct: 200  ETLKNLKEGAVLKGVVKNLTDYGAFIDLG-GIDGLLHITDMSWGRIGHPSEMFNVGDEVR 258

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              VL  +P  +RV + LK        +++        VG  V G++  +  YG FI IE 
Sbjct: 259  VVVLKFDPAQERVSLGLKQIQEDPWHRAD----EKYPVGTRVRGKVVSITDYGAFIEIEQ 314



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 147/352 (41%), Gaps = 43/352 (12%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
           +L+ ++EG VL   VK++ D+G  +  G     G L   +++   G    P  +      
Sbjct: 201 TLKNLKEGAVLKGVVKNLTDYGAFIDLG--GIDGLLHITDMS--WGRIGHPSEMF----- 251

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL------VP-GMMVSTRVQSILENGVM 338
           ++    +VV L  DP    + V+  LK I  D         P G  V  +V SI + G  
Sbjct: 252 NVGDEVRVVVLKFDP--AQERVSLGLKQIQEDPWHRADEKYPVGTRVRGKVVSITDYGAF 309

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  T    +        ++V A +L +DP ++ + L +     NP
Sbjct: 310 IEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQIEQNP 369

Query: 394 Y-LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVR 451
           + LL ++ P   V  G I + +         G+ + +          V +SD++  + ++
Sbjct: 370 WTLLEDKYPIGSVIKGQIRNVTD-------FGIFVGVEE---GVDGLVHVSDISWTQRIK 419

Query: 452 KLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKP-GMVVKGKVI 507
              + YK+G  V   +L      E  + GI  L+   +E    T S+  P G  VKGKV 
Sbjct: 420 HPGELYKKGDEVEAVMLNIDVENERFSLGIKQLQPDPWE----TLSERTPVGSRVKGKVT 475

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
            V  FGA V+   G++ L  +  + E  +  P    +   E+  +++ + ++
Sbjct: 476 KVTDFGAFVEIEPGIEGLVHVSELREERVENPRDVVQEAQEVDVKIIDINTQ 527



 Score = 47.4 bits (111), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G V ++T  G FI + + ++  V +S +S    ++ P K   +G+ V   VL ++P +
Sbjct: 296  VRGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKA 355

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            KR+ + +K  +    +  E        +G ++ GQI+ V  +G+F+ +E 
Sbjct: 356  KRIALGMKQIEQNPWTLLE----DKYPIGSVIKGQIRNVTDFGIFVGVEE 401


>gi|253998815|ref|YP_003050878.1| 30S ribosomal protein S1 [Methylovorus glucosetrophus SIP3-4]
 gi|313200902|ref|YP_004039560.1| 30S ribosomal protein S1 [Methylovorus sp. MP688]
 gi|253985494|gb|ACT50351.1| ribosomal protein S1 [Methylovorus glucosetrophus SIP3-4]
 gi|312440218|gb|ADQ84324.1| ribosomal protein S1 [Methylovorus sp. MP688]
          Length = 592

 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 159/366 (43%), Gaps = 35/366 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G VVKG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  ++L 
Sbjct: 221 LKEGAVVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLTVGEEVEAKILK 279

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +A+   Y   T RL   G +T +  +G FV    G++G  
Sbjct: 280 FDQEKNRVSLGIKQLGDDPWVALTRRYPVGT-RLF--GKVTNLTDYGAFVEIEPGIEGLV 336

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV----K 668
             SE+   +    P+ +  +G  V+  I+      RR  LS  MK  +V+  D      K
Sbjct: 337 HVSEMDWTNKNVHPAKIAQLGDEVEVMILEIDEDRRR--LSLGMKQCQVNPWDEFAATHK 394

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  VSG +  +T   V +     G   G     HL+D   + T  +++   K G E   
Sbjct: 395 KGDKVSGQIKSITDFGVFI-----GLPGGIDGLVHLSDLSWNQTGEEAIRNFKKGDEVAA 449

Query: 727 L-LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVR 780
           + L +D E   + L  K        QL +D  +++   N   ++V G V ++   G  + 
Sbjct: 450 VVLAIDVEKERISLGVK--------QLDNDPFSAYTTTNDKGAIVTGTVKSVDAKGAVIT 501

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
             G + G+   S+    +  D +     GQ V + IL+++ +   I LS+K    +  +A
Sbjct: 502 LDGEVEGYLRASEIAREKIEDATTALKEGQEVEARILNIDRKNRSINLSIKAKDIAE-EA 560

Query: 841 SFMQEH 846
             MQ++
Sbjct: 561 DAMQKY 566



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 133/319 (41%), Gaps = 45/319 (14%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V A+IL  D     V L +     +P++   R  P       KV ++ D    V ++ 
Sbjct: 271 EEVEAKILKFDQEKNRVSLGIKQLGDDPWVALTRRYPVGTRLFGKVTNLTDYGAFVEIEP 330

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
           G+ GL+    +D  +  V       + D  E  + ++++  +  S      LG +  +  
Sbjct: 331 GIEGLVHVSEMDWTNKNVHPAKIAQLGDEVEVMILEIDEDRRRLS------LGMKQCQ-- 382

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
                  + ++    TH   K G  V G++ ++  FG  +  PGG+  L    H+S+   
Sbjct: 383 ------VNPWDEFAATH---KKGDKVSGQIKSITDFGVFIGLPGGIDGLV---HLSDLSW 430

Query: 537 VKPG----KKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEATDR-LIT 589
            + G    + FK G E+   VL   V+ +RI++  K+          S+Y    D+  I 
Sbjct: 431 NQTGEEAIRNFKKGDEVAAVVLAIDVEKERISLGVKQLDNDP----FSAYTTTNDKGAIV 486

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +  ++  G  +     V+G+   SE+  +   + ++    GQ V+ RI++    +R 
Sbjct: 487 TGTVKSVDAKGAVITLDGEVEGYLRASEIAREKIEDATTALKEGQEVEARILNIDRKNRS 546

Query: 650 INLSFMMKPTRVSEDDLVK 668
           INLS   K      D + K
Sbjct: 547 INLSIKAKDIAEEADAMQK 565



 Score = 47.0 bits (110), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 114/546 (20%), Positives = 228/546 (41%), Gaps = 52/546 (9%)

Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL 278
           +L  + L+ + ++ G V+TA V SI+D   I++ GL S +         +   ++V  G 
Sbjct: 39  ALFEESLARQEMRSGEVITAEVVSIDDDFVIVNAGLKSESVIATSEFRNDRGELEVAVGD 98

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
            +Q  + +++       LS +          DL+    +  +   M++ RV+  L   VM
Sbjct: 99  FVQVAIETLEDGYGSTKLSREK-AKRLAAWLDLENAMNESRIIKGMINGRVKGGLT--VM 155

Query: 339 L-SFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
           + S   +  G+ VD+  +++T P         + K+ + +++ +D     V ++    L 
Sbjct: 156 VNSIRAFLPGSLVDLRPVKDTTPF--------EGKEWDFKVIKLDRKRNNVVVSRRAVLE 207

Query: 397 HNRAPPSHVKVGDIYDQSKVVRVDRGL---GLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
            +        +G + + + V  + + +   G  +D+          + I+D+A   V+  
Sbjct: 208 ESMGADREALLGSLKEGAVVKGIVKNITDYGAFVDLG----GIDGLLHITDLAWRRVKHP 263

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
            +    G  V  +IL F   +   +  +K    +  V        G  + GKV  +  +G
Sbjct: 264 SEVLTVGEEVEAKILKFDQEKNRVSLGIKQLGDDPWVALTRRYPVGTRLFGKVTNLTDYG 323

Query: 514 AIVQFPGGVKALCPLPHMSEFEI----VKPGKKFKVGAELVFRVLGVKS--KRITVTHKK 567
           A V+   G++ L    H+SE +     V P K  ++G E+   +L +    +R+++  K+
Sbjct: 324 AFVEIEPGIEGLV---HVSEMDWTNKNVHPAKIAQLGDEVEVMILEIDEDRRRLSLGMKQ 380

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 626
             V       +++ +  D++   G I  I   G F+    G+ G    S+L  +  G E 
Sbjct: 381 CQVNPWDEFAATHKKG-DKV--SGQIKSITDFGVFIGLPGGIDGLVHLSDLSWNQTGEEA 437

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVV 680
              +  G  V   +++      RI+L       ++  D           G++V+G V  V
Sbjct: 438 IRNFKKGDEVAAVVLAIDVEKERISLGV----KQLDNDPFSAYTTTNDKGAIVTGTVKSV 493

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLLVLD--NESSN 736
                V+ +   G  +G +    +A + +E AT   + +K G E + ++L +D  N S N
Sbjct: 494 DAKGAVITL--DGEVEGYLRASEIAREKIEDAT---TALKEGQEVEARILNIDRKNRSIN 548

Query: 737 LLLSAK 742
           L + AK
Sbjct: 549 LSIKAK 554



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L    +V+G VKN+T  G F+ L   +D  + +++L+   V+ P +   +G+ V  ++L 
Sbjct: 221  LKEGAVVKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVKHPSEVLTVGEEVEAKILK 279

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +    RV + +K    +      +       VG  + G++  +  YG F+ IE
Sbjct: 280  FDQEKNRVSLGIK----QLGDDPWVALTRRYPVGTRLFGKVTNLTDYGAFVEIE 329


>gi|219848347|ref|YP_002462780.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219542606|gb|ACL24344.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 400

 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G V +G V +V  FG  V   GG   L  L  +S   +  P +  KVG ++   +
Sbjct: 225 ASLQEGDVREGVVSSVCDFGVFVDI-GGADGLVHLSEISWSRVKHPSEVLKVGDKVKVSI 283

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L +  + KRI ++ K+T  +    +   Y       I  G +T++   G FVR  +GV+G
Sbjct: 284 LNIDHERKRIALSIKRTQSEPWTRVAERYQLGQ---IVEGTVTQLASFGAFVRIEDGVEG 340

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
               SE+G +    P  +   GQVV+ RI+   PA +R+ LS  ++
Sbjct: 341 LIHVSEMGDERIQHPRDVLSEGQVVQARIIRIDPARKRMGLSLRLQ 386


>gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|385815547|ref|YP_005851938.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
 gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 401

 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 114/248 (45%), Gaps = 38/248 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKTIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
             +   G  V IG  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  TNF--GSFVDIG-GVDGLVHISEISYKHVDKPS--------DVLK---VGQDVKVKVIGI 253

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +                  P    +    L+   +++G VK++T
Sbjct: 254  DND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLT 293

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            + G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P  +R+ +++K  
Sbjct: 294  NFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQV 353

Query: 1451 DSRTASQS 1458
            D   AS S
Sbjct: 354  DPENASSS 361



 Score = 47.0 bits (110), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 44/214 (20%)

Query: 1306 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1360
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1361 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1394
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              Q+     S+L+ GD++ G++K + ++G F+ +
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEV 301



 Score = 44.3 bits (103), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 144/366 (39%), Gaps = 55/366 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F Q    L E                       G VIEG+V    +FG   +F E +D
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFG---AFVEVAD 303

Query: 900 -VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N 
Sbjct: 304 GIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSND 363

Query: 952 NRQAQK 957
             +A++
Sbjct: 364 RPRARR 369


>gi|254556749|ref|YP_003063166.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1]
 gi|300767480|ref|ZP_07077392.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180692|ref|YP_003924820.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|380032672|ref|YP_004889663.1| 30S ribosomal protein S1 [Lactobacillus plantarum WCFS1]
 gi|418275432|ref|ZP_12890755.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           NC8]
 gi|448821382|ref|YP_007414544.1| 30S ribosomal protein S1 [Lactobacillus plantarum ZJ316]
 gi|254045676|gb|ACT62469.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1]
 gi|300495299|gb|EFK30455.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046183|gb|ADN98726.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|342241915|emb|CCC79149.1| 30S ribosomal protein S1 [Lactobacillus plantarum WCFS1]
 gi|376008983|gb|EHS82312.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           NC8]
 gi|448274879|gb|AGE39398.1| 30S ribosomal protein S1 [Lactobacillus plantarum ZJ316]
          Length = 429

 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VV+GKV  + +FGA V   GG+  L  +  +S   + KP    KVG E+  ++L 
Sbjct: 201 LQAGDVVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYERVEKPADVLKVGQEVTVKILS 259

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V +  +R++++ K TL +    I     +     +  G + ++   G FV  + GV+G  
Sbjct: 260 VDADRERVSLSIKATLPEPWDGIEEKAPQGA---VLDGKVKRLTSFGAFVEVFPGVEGLV 316

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
             S++       P+ +  VGQ +K +++   P  +R+ LS      KP    +D+
Sbjct: 317 HISQISHQHIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIKALEEKPQTADDDN 371



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 150/366 (40%), Gaps = 58/366 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL      + +    VG V+   ++S I  S + N S+++   R+      
Sbjct: 50  GVEGVVPLKELSTQRVDDVNEAAKVGDVLDLVVISRI-GSDKENGSYLLSHRRLEARKVW 108

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIK 719
           DD+ K    G  +   V  V    +VV    +G+    IP   + DH +E     K    
Sbjct: 109 DDVEKEYEAGHTIKAPVTQVVKGGLVVDAGVRGF----IPASMIDDHYVEDLNAYK---- 160

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGC 777
            G E +  ++    S N L+ +  +++   ++   + +   +    VV G V  +   G 
Sbjct: 161 -GQELELKIIEIEPSENRLILSHRAVVEKQREAQREEALKTLQAGDVVEGKVARLTNFGA 219

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV  LG + G    S+    +    +    VGQ V   IL V+++  R++LS+K +    
Sbjct: 220 FVD-LGGIDGLVHVSEISYERVEKPADVLKVGQEVTVKILSVDADRERVSLSIKATLPEP 278

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D         +EEK                      G+V++GKV     FG  V  E  
Sbjct: 279 WDG--------IEEKAPQ-------------------GAVLDGKVKRLTSFGAFV--EVF 309

Query: 898 SDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V G      I+H  +A     ++ G  I+  +LDV   E+ + LS+K +  ++ + A+
Sbjct: 310 PGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIKALE-EKPQTAD 368

Query: 951 SNRQAQ 956
            + ++Q
Sbjct: 369 DDNESQ 374



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 147/351 (41%), Gaps = 28/351 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +V  G VVKG+V+A+D     IV   G GV+ + PL  +S   +    +  KVG  L   
Sbjct: 22  EVNVGDVVKGEVLAIDDDKQVIVGIQGTGVEGVVPLKELSTQRVDDVNEAAKVGDVLDLV 81

Query: 553 VLG-----VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           V+       ++    ++H++   +     +    EA   +     +T++ K G  V    
Sbjct: 82  VISRIGSDKENGSYLLSHRRLEARKVWDDVEKEYEAGHTI--KAPVTQVVKGGLVVDA-- 137

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSED 664
           GV+GF P S +  D   E  + Y  GQ ++ +I+   P+  R+ LS    + K      +
Sbjct: 138 GVRGFIPASMID-DHYVEDLNAYK-GQELELKIIEIEPSENRLILSHRAVVEKQREAQRE 195

Query: 665 DLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
           + +K    G +V G V  +T     V +   G   G +    ++   E       V+K G
Sbjct: 196 EALKTLQAGDVVEGKVARLTNFGAFVDL---GGIDGLVHVSEIS--YERVEKPADVLKVG 250

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            E   ++L +D +   + LS K +L      +   A      +V+ G V  +   G FV 
Sbjct: 251 QEVTVKILSVDADRERVSLSIKATLPEPWDGIEEKAPQ---GAVLDGKVKRLTSFGAFVE 307

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+      A  +    VGQ ++  +LDV  +  R+ LS+K
Sbjct: 308 VFPGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIK 358



 Score = 48.1 bits (113), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 15/223 (6%)

Query: 362 NWKNDYNQHK--KVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-----VKVGDIYDQS 414
           ++  D N +K  ++  +I+ ++P+   + L+    +   R          ++ GD+  + 
Sbjct: 151 HYVEDLNAYKGQELELKIIEIEPSENRLILSHRAVVEKQREAQREEALKTLQAGDVV-EG 209

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
           KV R+    G  +D+          V +S+++ E V K     K G  V V+IL      
Sbjct: 210 KVARL-TNFGAFVDLGGID----GLVHVSEISYERVEKPADVLKVGQEVTVKILSVDADR 264

Query: 475 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
              +  +KA+  E           G V+ GKV  + SFGA V+   GV+ L  +  +S  
Sbjct: 265 ERVSLSIKATLPEPWDGIEEKAPQGAVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQ 324

Query: 535 EIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLA 575
            I  P    KVG E+  +VL V+   KR+ ++ K    K + A
Sbjct: 325 HIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIKALEEKPQTA 367



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 22/187 (11%)

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
            P S  D+   + L+ Y +GQ ++ K++EI  +        LS R+ ++            
Sbjct: 144  PASMIDDHYVEDLNAY-KGQELELKIIEIEPSENRLI---LSHRAVVEKQREAQRE---- 195

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
                     E ++ L    +V+G V  +T+ G F+ L   +D  V +S +S   VE P  
Sbjct: 196  ---------EALKTLQAGDVVEGKVARLTNFGAFVDLG-GIDGLVHVSEISYERVEKPAD 245

Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1481
               +G+ V  ++LSV+   +RV +++K +        E         G ++ G++KR+ S
Sbjct: 246  VLKVGQEVTVKILSVDADRERVSLSIKATLPEPWDGIE----EKAPQGAVLDGKVKRLTS 301

Query: 1482 YGLFITI 1488
            +G F+ +
Sbjct: 302  FGAFVEV 308



 Score = 43.5 bits (101), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 45/212 (21%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  GD+V G++++ L+  G  V   G  + G VH +E+    V  P         D L  
Sbjct: 201  LQAGDVVEGKVAR-LTNFGAFVDLGG--IDGLVHVSEISYERVEKP--------ADVLKV 249

Query: 1317 YDEGQFVKCKVLEI-SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               GQ V  K+L + +   R +  ++ +L    DG                      IE+
Sbjct: 250  ---GQEVTVKILSVDADRERVSLSIKATLPEPWDG----------------------IEE 284

Query: 1376 LSPN-MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
             +P   ++ G VK +TS G F+ +   ++  V +S +S  ++ +P     +G+ +  +VL
Sbjct: 285  KAPQGAVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVL 344

Query: 1435 SVEPLSKRVEVTLK-------TSDSRTASQSE 1459
             V P  KR+ +++K       T+D    SQ E
Sbjct: 345  DVRPDEKRLALSIKALEEKPQTADDDNESQPE 376


>gi|206901601|ref|YP_002251093.1| ribosomal protein S1 [Dictyoglomus thermophilum H-6-12]
 gi|206740704|gb|ACI19762.1| ribosomal protein S1, putative [Dictyoglomus thermophilum H-6-12]
          Length = 552

 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 22/304 (7%)

Query: 358 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVKVGDIYD 412
           FP  N +  YN    V AR+L +D  SR   L++     NP+ L     P     G I  
Sbjct: 228 FPIKNIRRYYNTGDIVKARVLSLDENSRTAQLSIKQAQPNPWSLFKEKYPE----GSII- 282

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
           +++++++  G+ + +D      +   YV +S+++    + ++   K G  V+ ++L    
Sbjct: 283 KAEIIKISGGIVVKVD------NLIGYVPMSEISWGRPQDVKNSLKVGDKVKAKVLSVDD 336

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
           L       +K            + K G +V GKV  +  FG  ++   G++ L P   +S
Sbjct: 337 LNQKIFLSIKQVEPNPWEVIDQNYKIGEIVSGKVTNITDFGIFIEIKPGLEGLIPRKLIS 396

Query: 533 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
              I      FK G  +  +++ +  ++K++T++ +  L      I   Y E  +     
Sbjct: 397 WERISNISDIFKPGDFIEAKIIEIDKENKKLTLSRRDLLKDPWEDIDEKYREGQN---IK 453

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G I +  K G  V    G++GF P +++  +   E    +   + V+ +I+   P  RRI
Sbjct: 454 GRIIEKLKDGYIVELEPGIEGFLPYTQINFEKENEIQG-FKENEEVEAKIVKINPRFRRI 512

Query: 651 NLSF 654
            LS 
Sbjct: 513 TLSI 516



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 98/488 (20%), Positives = 203/488 (41%), Gaps = 85/488 (17%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 545
           +E L++ + + +P   ++GKVI  +  G I++    V+   P   + +   +KP K +  
Sbjct: 95  WEELLWAYENNQP---IQGKVINYNGRGFILEINNEVEGFIPAKEI-DVPPIKPPKYY-- 148

Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSS--------YAEATDRLITHGWITKIE 597
               + R +  K KRI     + ++ ++  +           + +  +  I  G I K++
Sbjct: 149 ----INRRIEGKIKRINPEKNQLIISARELLEQKQEEERSNLWEKIKNSQIVRGRIIKVD 204

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---- 653
           +    V    G+ G   + E+   P       Y+ G +VK R++S    SR   LS    
Sbjct: 205 EDKLTVDLGLGIIGIVEKDEISWFPIKNIRRYYNTGDIVKARVLSLDENSRTAQLSIKQA 264

Query: 654 ----FMMKPTRVSEDDLVKLGSL-VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
               + +   +  E  ++K   + +SG + VV  + ++ YV     S G    + + + L
Sbjct: 265 QPNPWSLFKEKYPEGSIIKAEIIKISGGI-VVKVDNLIGYVPMSEISWGR--PQDVKNSL 321

Query: 709 EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN----SV 764
           +    +K+         ++L +D+ +  + LS K       Q  P+    I  N     +
Sbjct: 322 KVGDKVKA---------KVLSVDDLNQKIFLSIK-------QVEPNPWEVIDQNYKIGEI 365

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSET 823
           V G V NI + G F+     L G  PR K +  +R +++S  +  G  + + I++++ E 
Sbjct: 366 VSGKVTNITDFGIFIEIKPGLEGLIPR-KLISWERISNISDIFKPGDFIEAKIIEIDKEN 424

Query: 824 GRITLS---LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII--GSVI 878
            ++TLS   L +      D  + +   +    I  L+            +G+I+     I
Sbjct: 425 KKLTLSRRDLLKDPWEDIDEKYREGQNIKGRIIEKLK------------DGYIVELEPGI 472

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938
           EG +  +      ++FE+ +++ GF  + +           ++A I+ +    R + LS+
Sbjct: 473 EGFLPYTQ-----INFEKENEIQGFKENEE-----------VEAKIVKINPRFRRITLSI 516

Query: 939 KTVFIDRF 946
           K +  ++ 
Sbjct: 517 KALIKEKL 524



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 115/281 (40%), Gaps = 43/281 (15%)

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
            +++I + + G +  IN EK  L +  R     + ++  +    N+   I    IV GRI 
Sbjct: 146  KYYINRRIEGKIKRINPEKNQLIISAR----ELLEQKQEEERSNLWEKIKNSQIVRGRII 201

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
            K+      L V +G  + G V   E+    + + +  Y          Y+ G  VK +VL
Sbjct: 202  KV--DEDKLTVDLGLGIIGIVEKDEISWFPIKN-IRRY----------YNTGDIVKARVL 248

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
                              SLD  S T  + LS     P       E      I++  +  
Sbjct: 249  ------------------SLDENSRT--AQLSIKQAQPNPWSLFKEKYPEGSIIKAEIIK 288

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            ++  G  ++    L   V +S +S G  +  +    +G  V  +VLSV+ L++++ +++K
Sbjct: 289  IS--GGIVVKVDNLIGYVPMSEISWGRPQDVKNSLKVGDKVKAKVLSVDDLNQKIFLSIK 346

Query: 1449 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              +       +     N  +G+IV G++  +  +G+FI I+
Sbjct: 347  QVEPNPWEVID----QNYKIGEIVSGKVTNITDFGIFIEIK 383



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 156/346 (45%), Gaps = 62/346 (17%)

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
            ++ +  G  V A V++L  +S   +L     +I + + +     K+K  Y  GS+++AEI
Sbjct: 234  RRYYNTGDIVKARVLSLDENSRTAQL-----SIKQAQPNPWSLFKEK--YPEGSIIKAEI 286

Query: 1072 TEIK-PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
             +I   + +++   IG+   + ++E++  +   V+N   + K+G  V A++++  +    
Sbjct: 287  IKISGGIVVKVDNLIGY---VPMSEISWGRPQDVKN---SLKVGDKVKAKVLSVDDL--N 338

Query: 1131 KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQ 1190
            +K FL    ++P+   V +   K         IG+ V+G V  + +    + I   L+  
Sbjct: 339  QKIFLSIKQVEPNPWEVIDQNYK---------IGEIVSGKVTNITDFGIFIEIKPGLEGL 389

Query: 1191 LFILDSAYEPSELQEFQR------RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
            +        P +L  ++R       F  G  +   ++ I+KE K L L  R   D + D 
Sbjct: 390  I--------PRKLISWERISNISDIFKPGDFIEAKIIEIDKENKKLTLSRR---DLLKDP 438

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              DI          EG  + GRI + L    G +V++ P + G + +T++          
Sbjct: 439  WEDIDEK-----YREGQNIKGRIIEKLK--DGYIVELEPGIEGFLPYTQI---------- 481

Query: 1305 GYDEGQFDPLSGYDEGQFVKCKVLEIS-RTVRGTFHVELSLRSSLD 1349
              +  + + + G+ E + V+ K+++I+ R  R T  ++  ++  LD
Sbjct: 482  --NFEKENEIQGFKENEEVEAKIVKINPRFRRITLSIKALIKEKLD 525


>gi|161507459|ref|YP_001577413.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
 gi|160348448|gb|ABX27122.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
          Length = 403

 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+  
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDD 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
              SE+      +PS +  V Q VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 92/197 (46%), Gaps = 34/197 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     + + V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPS 343

Query: 1440 SKRVEVTLKTSDSRTAS 1456
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 133/320 (41%), Gaps = 36/320 (11%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +D++   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    V Q+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDP 342

Query: 822 ETGRITLSLK--QSCCSSTD 839
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     ++L+ GD+  G++K + ++G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDVFEGEVKSLTNFGAFVEV 302



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 147/374 (39%), Gaps = 57/374 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R E   D   +   +   G   K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGVITRREYTSDRNADLRDLVKPGDKFKALVLRRAGGDKE-NGEFFFSVTRLKEREAY 102

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G+ + G V       ++V V  +G+    +P   +++   + + +K  I  
Sbjct: 103 DKLQKDFEEGNAIEGTVTSSVRGGLLVDVGTRGF----LPASLISNR--YVSDLKPYIGK 156

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
             +  ++  +D   + L+LS K  LI   ++   D  AS +    V+ G V  +   G F
Sbjct: 157 TMKL-KITEIDPNKNRLILSHK-DLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  +G + G    S+         S     GQ V+  ++ ++ +  RI+LS+KQ+  S  
Sbjct: 215 ID-VGGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTEPS-- 271

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
              F Q    L E                       G V EG+V    +FG  V  E   
Sbjct: 272 --PFEQATADLNE-----------------------GDVFEGEVKSLTNFGAFV--EVAD 304

Query: 899 DVYGFITHHQLAGATVESGS-------VIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   +++   V+  S        ++  +L++  ++R + LS+K    D    ++ 
Sbjct: 305 GIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPSDRRISLSIKAA--DSNASSSD 362

Query: 952 NRQAQKKKRKREAS 965
           N  ++ ++ + E S
Sbjct: 363 NHSSRPRRSRNENS 376


>gi|256851010|ref|ZP_05556399.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN]
 gi|260661222|ref|ZP_05862136.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN]
 gi|256616072|gb|EEU21260.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN]
 gi|260548159|gb|EEX24135.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN]
          Length = 402

 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+GKV  + +FGA V   GGV  L  +  +S   I KP    K G ++  +V+G+  
Sbjct: 198 GDIVEGKVSRLTNFGAFVDV-GGVDGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDD 256

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 614
            R    H+ +L   K    S + +AT  L    +  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISL-SIKQTEPSPFEQATSELSEGEVVEGEVKSLTSFGAFVEVADGIQGLVH 311

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            SE+      +PS +  VG+ VK +++S  P  +RI+LS 
Sbjct: 312 VSEISNKRVEKPSDVLKVGETVKVKVLSINPDEKRISLSI 351



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 52/236 (22%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++S++ +   G  V +G  + G VH +E+    +  P         D L     
Sbjct: 198  GDIVEGKVSRLTNF--GAFVDVGG-VDGLVHISEISYKHIDKP--------SDVLK---T 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   +LS  
Sbjct: 244  GQDVKVKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATSELSEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +V+G VK++TS G F+ ++  +   V +S +S+  VE P     +G+ V  +VLS+ P 
Sbjct: 284  EVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPD 343

Query: 1440 SKRVEVTLKTSD----------SRTASQSEI--------NNLSNLHVGDIVIGQIK 1477
             KR+ +++K +            R+AS+++         NN +   +GDI+  Q+K
Sbjct: 344  EKRISLSIKQAQPAAEGEGNNARRSASRNDSVAKKYMSDNNDNGFALGDIIGDQLK 399



 Score = 47.4 bits (111), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 129/314 (41%), Gaps = 38/314 (12%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGW 592
           ++VKPG  FK    LV R  G   +        T +K + A   L    EA + +   G 
Sbjct: 64  DLVKPGDTFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDYEAGNAI--EGT 118

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELG------LDPGCEPSSMYHVGQVVKCRIMSSIPA 646
           +T   + G  V    G +GF P S +       L P        ++G+ +K +I    P 
Sbjct: 119 VTSSVRGGLIVNV--GTRGFLPASLISNHFVSDLKP--------YIGKTIKVKITEIDPN 168

Query: 647 SRRINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
             R+ LS         E+    +      G +V G V  +T     V V   G   G + 
Sbjct: 169 KNRLILSHKELIEEEREEAFETVASQLVAGDIVEGKVSRLTNFGAFVDV---GGVDGLVH 225

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
              ++   +H      V+K G +   +++ +D++   + LS K +  +  +Q  S+ S  
Sbjct: 226 ISEIS--YKHIDKPSDVLKTGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSELSE- 282

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               VV G V ++   G FV     + G    S+  + +    S    VG++V+  +L +
Sbjct: 283 --GEVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSI 340

Query: 820 NSETGRITLSLKQS 833
           N +  RI+LS+KQ+
Sbjct: 341 NPDEKRISLSIKQA 354



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV+G V  +T+ G F+ +   +D  V +S +S  +++ P      G+ V  +V+ ++   
Sbjct: 200  IVEGKVSRLTNFGAFVDVG-GVDGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDDDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     S L  G++V G++K + S+G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSELSEGEVVEGEVKSLTSFGAFVEV 302


>gi|398859100|ref|ZP_10614782.1| ribosomal protein S1 [Pseudomonas sp. GM79]
 gi|398237713|gb|EJN23459.1| ribosomal protein S1 [Pseudomonas sp. GM79]
          Length = 560

 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  V   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVSVNDKGAIVKGTVKEVDAKGAIVVLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 40.8 bits (94), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV+G VK V +KG  ++L+  ++A +  S +S   VE        G+ V  +++SV+  S
Sbjct: 455  IVKGTVKEVDAKGAIVVLADDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKS 514

Query: 1441 KRVEVTLKTSD 1451
            + +++++K+ D
Sbjct: 515  RVIQLSIKSKD 525


>gi|418036541|ref|ZP_12674957.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
           subsp. bulgaricus CNCM I-1519]
 gi|354687591|gb|EHE87671.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
           subsp. bulgaricus CNCM I-1519]
          Length = 401

 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  +  FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTDFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 38/248 (15%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGK +   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKTIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
                 G  V IG  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  TDF--GSFVDIG-GVDGLVHISEISYKHVDKPS--------DVLK---VGQDVKVKVIGI 253

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                     + LS++ +                  P    +    L+   +++G VK++T
Sbjct: 254  DND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLT 293

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            + G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P  +R+ +++K  
Sbjct: 294  NFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQV 353

Query: 1451 DSRTASQS 1458
            D   AS S
Sbjct: 354  DPENASSS 361



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 44/214 (20%)

Query: 1306 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1360
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1361 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1394
                    T++D P K      H E IE+            L    +V+G V  +T  G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGS 212

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              Q+     S+L+ GD++ G++K + ++G F+ +
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEV 301



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 53/365 (14%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  + + G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 953 RQAQK 957
            +A++
Sbjct: 365 PRARR 369


>gi|157164057|ref|YP_001466439.1| 30S ribosomal protein S1 [Campylobacter concisus 13826]
 gi|112801623|gb|EAT98967.1| 30S ribosomal protein S1 [Campylobacter concisus 13826]
          Length = 558

 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 121/514 (23%), Positives = 202/514 (39%), Gaps = 75/514 (14%)

Query: 457 YKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           +K G  ++V I G R+   + +    L+    +  +  +     G +   KV+  +  G 
Sbjct: 75  HKVGDTIKVVITGSRNGRPIVSHKKALRKEKVKAFIEAYDPENSGEI-DVKVVGKNKGGF 133

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKP--GKKFKVGAELVFRVLGVKSKR--ITVTHKKTL- 569
           I Q   GV+   P  H S F+  +   GK +KV      RV+ V  +   I V+ KK L 
Sbjct: 134 ITQDANGVEFFLPRTH-SGFKNAEGVVGKSYKV------RVIKVDKEENSIVVSRKKILD 186

Query: 570 --VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
              K +   LSS  E  D +I  G + KI  +G FV    GV G    SE+       PS
Sbjct: 187 DDRKKRKEALSSIVE-NDSVI-EGTVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPS 243

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNA 684
           S+Y  G  V  +++S     R ++LS       P     +D +++G  +   V  + P  
Sbjct: 244 SLYKEGDKVLVKVISYDNEKRHLSLSIKAATPDPWEEIINDGLEVGDTIKVTVSNIEPYG 303

Query: 685 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNL 737
             V +       G      L  H+   +  K++  P      G E D +++ +D +   L
Sbjct: 304 AFVDL-------GNDIEGFL--HISEISWDKNIKNPKDHISEGQEIDVEVIEIDAKGHRL 354

Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            +S K  L     +     +      VV G V  I   G FVR +G + G      A   
Sbjct: 355 RVSLKNLLPKPFDEFK---AKFKEGDVVKGVVTTITNFGAFVR-VGCVEGLLHNEDASWD 410

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
           +       +  G  +   I+ ++S   +I+LSLK    S   A                 
Sbjct: 411 RNDKCKDMFKAGDELEVKIIKIDSAEQKISLSLKDLKQSPVQA----------------- 453

Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA---GATV 914
                     +   F +G +++G + +  DFGV V   ++ D    I    L     +T+
Sbjct: 454 ----------FANKFSVGDIVKGTIRDIKDFGVFVELGDNVD--ALIRKEDLGSVDASTL 501

Query: 915 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
           + G  I+AAI  + + +  + LS++ +   + RE
Sbjct: 502 KIGDEIEAAIAFIDEKKNRIRLSIRRLAKQKERE 535



 Score = 43.9 bits (102), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 120/279 (43%), Gaps = 44/279 (15%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +GK+    V+ ++KE+  + +  +   D    K      + + + +    ++ G + KI 
Sbjct: 159  VGKSYKVRVIKVDKEENSIVVSRKKILDDDRKK----RKEALSSIVENDSVIEGTVKKIT 214

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
            +   G+ V +G  + G VH++E+           Y +G  +P S Y EG  V  KV+   
Sbjct: 215  TY--GMFVDVGG-VDGLVHYSEI----------SY-KGPVNPSSLYKEGDKVLVKVISYD 260

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMIVQGYVKNVT 1390
               R   H+ LS++++                 TP    E I D L     ++  V N+ 
Sbjct: 261  NEKR---HLSLSIKAA-----------------TPDPWEEIINDGLEVGDTIKVTVSNIE 300

Query: 1391 SKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
              G F+ L   ++  + +S +S D  +++P+     G+ +   V+ ++    R+ V+LK 
Sbjct: 301  PYGAFVDLGNDIEGFLHISEISWDKNIKNPKDHISEGQEIDVEVIEIDAKGHRLRVSLKN 360

Query: 1450 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
               +   + +    +    GD+V G +  + ++G F+ +
Sbjct: 361  LLPKPFDEFK----AKFKEGDVVKGVVTTITNFGAFVRV 395


>gi|297205893|ref|ZP_06923288.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16]
 gi|297149019|gb|EFH29317.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16]
          Length = 402

 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+GKV  + +FGA V   GGV  L  +  +S   I KP    K G ++  +V+G+  
Sbjct: 198 GDIVEGKVSRLTNFGAFVDV-GGVDGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDD 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTE-------PSPFEQATSELSEGEVVEGEVKSLTSFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SE+      +PS +  VG+ VK +++S  P  +RI+LS 
Sbjct: 310 VHVSEISNKRVEKPSDVLKVGETVKVKVLSINPDEKRISLSI 351



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 52/236 (22%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++S++ +   G  V +G  + G VH +E+    +  P         D L     
Sbjct: 198  GDIVEGKVSRLTNF--GAFVDVGG-VDGLVHISEISYKHIDKP--------SDVLK---T 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   +LS  
Sbjct: 244  GQDVKVKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATSELSEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +V+G VK++TS G F+ ++  +   V +S +S+  VE P     +G+ V  +VLS+ P 
Sbjct: 284  EVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPD 343

Query: 1440 SKRVEVTLKTSD----------SRTASQSEI--------NNLSNLHVGDIVIGQIK 1477
             KR+ +++K +            R+AS+++         NN +   +GDI+  Q+K
Sbjct: 344  EKRISLSIKQAQPAAEGEGNNARRSASRNDSVAKKYMSDNNDNGFALGDIIGDQLK 399



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 38/314 (12%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGW 592
           ++VKPG  FK    LV R  G   +        T +K + A   L    EA + +   G 
Sbjct: 64  DLVKPGDTFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDYEAGNAI--EGT 118

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELG------LDPGCEPSSMYHVGQVVKCRIMSSIPA 646
           +T   + G  V    G +GF P S +       L P        ++G+ +K +I    P 
Sbjct: 119 VTSSVRGGLIVNV--GTRGFLPASLISNHFVSDLKP--------YIGKSIKVKITEIDPN 168

Query: 647 SRRINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
             R+ +S         E+    +      G +V G V  +T     V V   G   G + 
Sbjct: 169 KNRLIISHKELIEEEREEAFETVASQLVAGDIVEGKVSRLTNFGAFVDV---GGVDGLVH 225

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
              ++   +H      V+K G +   +++ +D++   + LS K +  +  +Q  S+ S  
Sbjct: 226 ISEIS--YKHIDKPSDVLKTGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSELSE- 282

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               VV G V ++   G FV     + G    S+  + +    S    VG++V+  +L +
Sbjct: 283 --GEVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSI 340

Query: 820 NSETGRITLSLKQS 833
           N +  RI+LS+KQ+
Sbjct: 341 NPDEKRISLSIKQA 354



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV+G V  +T+ G F+ +   +D  V +S +S  +++ P      G+ V  +V+ ++   
Sbjct: 200  IVEGKVSRLTNFGAFVDVG-GVDGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDDDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     S L  G++V G++K + S+G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSELSEGEVVEGEVKSLTSFGAFVEV 302


>gi|424781786|ref|ZP_18208642.1| SSU ribosomal protein S1p [Campylobacter showae CSUNSWCD]
 gi|421960318|gb|EKU11921.1| SSU ribosomal protein S1p [Campylobacter showae CSUNSWCD]
          Length = 556

 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 119/552 (21%), Positives = 217/552 (39%), Gaps = 83/552 (15%)

Query: 424 GLLLDIPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
           G+++DI    V       +   + IS++ +E     E K+K G  ++V I G R  + + 
Sbjct: 39  GIIVDIKGDEVFVNVGKKSEGILNISEIQDE---NGELKFKAGDTIKVVITGSRGGKPIV 95

Query: 478 T--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
           +    L+    +  + ++++     +   K+I  +  G + Q   G++   P      F+
Sbjct: 96  SHKKALRKEKVKAYIDSYNEENQD-IFDVKIIGKNRGGFVAQNSDGIEFFLPRSQGG-FK 153

Query: 536 IVKP--GKKFKVGAELVFRVLGVK--SKRITVTHKKTL---VKSKLAILSSYAEATDRLI 588
                 GK FKV      +V+ +    + I V+ KK L    K K   +S+ AE TD  +
Sbjct: 154 DANAVVGKSFKV------KVIKIDKDEQSIIVSRKKLLDEDRKKKREAISAVAENTD--V 205

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G + KI  +G FV    GV G    SE+       P S+Y  G  V  +++      +
Sbjct: 206 IEGVVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGSIYKEGDKVLVKVIKYDNEKK 264

Query: 649 RINLSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            ++LS         E+  D + +G  +   V  + P    V +       G      L  
Sbjct: 265 HLSLSIKAATPDPWEEIKDGLDVGDTIKVTVSNIEPYGAFVDL-------GNDIEGFL-- 315

Query: 707 HLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
           H+   +  K++  P      G E D +++ +D +   L +S K  L     +  +     
Sbjct: 316 HISEISWDKNIKNPKDHISEGEELDVEVIEIDAKDRRLRVSLKNLLKKPFDEFKA---QF 372

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               +  G V ++   G FVR +G + G      A   +       + VG  +   I+ +
Sbjct: 373 KEGDITKGVVTSVTNFGAFVR-IGGVEGLLHNEDASWDRNDKCKDLFKVGDEIEVKIIKI 431

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           +S   +I+LS K    S   A                           + + F +G ++ 
Sbjct: 432 DSNDQKISLSQKDLKQSPVQA---------------------------YAKKFNVGDIVT 464

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV---IQAAILDVAKAERLVDL 936
           GK+ +  DFGV V   ++ D    I    L   + ES ++   I+AAI  + + +  + L
Sbjct: 465 GKIRDIKDFGVFVELGDNVD--ALIRKEDLGSVSAESLNINDSIEAAIAFIDEKKNRIRL 522

Query: 937 SLKTVFIDRFRE 948
           S++ +   + RE
Sbjct: 523 SVRRLAKQKERE 534



 Score = 41.6 bits (96), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 39/229 (17%)

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
            D++ G + KI +   G+ V +G  + G VH++E+           Y +G  +P S Y EG
Sbjct: 204  DVIEGVVKKITTY--GMFVDVGG-VDGLVHYSEI----------SY-KGPVNPGSIYKEG 249

Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1380
              V  KV++     +   H+ LS++++                 TP    E  + L    
Sbjct: 250  DKVLVKVIKYDNEKK---HLSLSIKAA-----------------TPDPWEEIKDGLDVGD 289

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             ++  V N+   G F+ L   ++  + +S +S D  +++P+     G+ +   V+ ++  
Sbjct: 290  TIKVTVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDHISEGEELDVEVIEIDAK 349

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             +R+ V+LK    +   + +    +    GDI  G +  V ++G F+ I
Sbjct: 350  DRRLRVSLKNLLKKPFDEFK----AQFKEGDITKGVVTSVTNFGAFVRI 394


>gi|406039430|ref|ZP_11046785.1| 30S ribosomal protein S1 [Acinetobacter ursingii DSM 16037 = CIP
           107286]
          Length = 557

 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI++ Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMNRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVKL 669
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKA 360

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYE 723
              G  VSG +  +T   + +     G   G     HL+D   + +    ++   K    
Sbjct: 361 HDKGEKVSGTIKSITDFGIFI-----GLPGGIDGLVHLSDISWNEQGEDAIRRYKKGDTV 415

Query: 724 FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
              +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E     H     G  V G + ++  FG  +  PGG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKAHD---KGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEDAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 AKGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 160/392 (40%), Gaps = 104/392 (26%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ VTG +  + +  A + +   +   L I D A++    PSE+ E      +G+ VT  
Sbjct: 192  GQTVTGTIKNLTDYGAFVDLG-GIDGLLHITDMAWKRIKHPSEVVE------VGQEVTVK 244

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++E+  + L L+   +   D  + I N        +G IV  R++ +     G   
Sbjct: 245  VLKFDRERNRVSLGLKQLGE---DPWLAIMN-----RYPKGSIVKARVTNLTDY--GCFA 294

Query: 1280 QIGPHLYGRVHFTEL----KNI------CVSDPLS---------------GYDEGQFDPL 1314
            +I   + G VH +E+    KNI       + D +                G  + + +P 
Sbjct: 295  EIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPW 354

Query: 1315 S----GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD-------- 1362
                  +D+G+ V   +  I+      F + + L   +DG+   + SD+S +        
Sbjct: 355  EEFAKAHDKGEKVSGTIKSIT-----DFGIFIGLPGGIDGL--VHLSDISWNEQGEDAIR 407

Query: 1363 --------------VDTPGKHLE-KIEDLSPN------------MIVQGYVKNVTSKGCF 1395
                          VD  G  +   I+ L+ +             +V+G V  V +KG  
Sbjct: 408  RYKKGDTVEAVILSVDAEGNRISLGIKQLNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS--- 1452
            + L+ +++A +  S ++   VE   K   +G+ V  ++++V+  S+ + +++K  D    
Sbjct: 468  VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAKDEAEE 527

Query: 1453 -------RTASQSEINNLSNLHVGDIVIGQIK 1477
                   RTA+ S+ N      +GD++  Q+K
Sbjct: 528  KEAVANLRTATTSQENGPKT--IGDLIKAQMK 557


>gi|422667950|ref|ZP_16727810.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv. aptata
           str. DSM 50252]
 gi|330980287|gb|EGH78422.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 387

 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 15  LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 73

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 74  YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 130

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 131 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 190

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 191 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 245

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 246 LSVDPERERISLGIK--------QLASDPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLA 297

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       G+ + + I+ V+ ++  I+LS+K
Sbjct: 298 DDIEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 346


>gi|384915508|ref|ZP_10015724.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
 gi|384527058|emb|CCG91595.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
          Length = 558

 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 115/530 (21%), Positives = 226/530 (42%), Gaps = 89/530 (16%)

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
            +G  P SE       EP S+  VGQ ++  + S       + LS      + + D ++K 
Sbjct: 39   EGIIPLSEF-----EEPESI-QVGQEIEVLLESLENEEGMVVLSRQKAAQKQNWDKILKT 92

Query: 670  ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGT----IPTEHLADHLEHATVMKSVIKPGY 722
               G  ++G V  V    +++ +  + +   +    +P ++L ++ E AT+   ++K   
Sbjct: 93   FEEGGTITGKVKQVVKGGLMLNIGVEAFLPASQIDVVPPKNLKEY-EGATLTCKIVK--- 148

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                   +  E  N++LS +  +     Q+       +H   +V G V N+ + G F+  
Sbjct: 149  -------ISEERKNVVLSRREIVEAERNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDL 201

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + G    +    G+    S+   VGQ +   ++DV+ E  R++L LKQ   +  +  
Sbjct: 202  DG-IDGLIHITDMSWGRINHPSEILKVGQEIEVVVIDVDREKERVSLGLKQKTPNPWEN- 259

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE----- 896
                   +EEK                   + +G+ ++GKV     +G  +  E      
Sbjct: 260  -------IEEK-------------------YPVGTKVKGKVVNLAPYGAFIELEPGIEGL 293

Query: 897  -HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
             H     +          +  G  ++A +LD+ KAE+ + LSLK + ++ + +A+     
Sbjct: 294  VHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLSLKALEVNPWDKASELYPP 353

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--PQ 1012
                + +   K+   +    A +E+  EN L           G+  V+D + T+K   P 
Sbjct: 354  GTIVKGK--VKNFSAY---GAYIEL--ENAL----------DGFIHVNDLSWTRKINHPS 396

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 1072
            +    G+ + A V+ +    T  ++LL +K ++E      K  +KK  Y VG +V  +++
Sbjct: 397  EVLKKGEEIEAKVLEI--DKTNQKILLGIKQLTE---DPWKEIEKK--YKVGEIVSGKVS 449

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +I      ++      G +HI++++ D+   V+++    K+GQ V+ARII
Sbjct: 450  KIASFGAFIQLADEIDGLVHISQISADRVAKVKDV---LKVGQEVSARII 496



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 147/343 (42%), Gaps = 24/343 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +VKG V  V  FGA +    G+  L  +  MS   I  P +  KVG E+   V+ V  
Sbjct: 182 GDLVKGVVKNVTDFGAFIDL-DGIDGLIHITDMSWGRINHPSEILKVGQEIEVVVIDVDR 240

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +R+++  K+        I   Y   T      G +  +  +G F+    G++G    S
Sbjct: 241 EKERVSLGLKQKTPNPWENIEEKYPVGTK---VKGKVVNLAPYGAFIELEPGIEGLVHIS 297

Query: 617 ELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----LVKLGS 671
           E+       +PS +  +GQ V+  ++    A ++++LS  +K   V+  D    L   G+
Sbjct: 298 EISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLS--LKALEVNPWDKASELYPPGT 355

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFD-QLL 728
           +V G V   +  A   Y+  +    G I    L+    + H +    V+K G E + ++L
Sbjct: 356 IVKGKVKNFS--AYGAYIELENALDGFIHVNDLSWTRKINHPS---EVLKKGEEIEAKVL 410

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D  +  +LL  K    +  +++           +V G V  I   G F++    + G 
Sbjct: 411 EIDKTNQKILLGIKQLTEDPWKEI---EKKYKVGEIVSGKVSKIASFGAFIQLADEIDGL 467

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              S+    + A +     VGQ V + I+ ++ E  RI LS+K
Sbjct: 468 VHISQISADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIK 510



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 108/477 (22%), Positives = 201/477 (42%), Gaps = 77/477 (16%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D   G +VKGKV+  +S   +V      + + PL    E E ++ G++     E++   L
Sbjct: 11  DFVEGSIVKGKVVDKNSKEVVVDIGYKSEGIIPLSEFEEPESIQVGQEI----EVLLESL 66

Query: 555 GVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
             +   + ++ +K   K     IL ++ E     IT G + ++ K G  +    GV+ F 
Sbjct: 67  ENEEGMVVLSRQKAAQKQNWDKILKTFEEGG--TIT-GKVKQVVKGGLMLNI--GVEAFL 121

Query: 614 PRSELGLDPGCEPSSM-YHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 666
           P S++ + P   P ++  + G  + C+I+       ++  SRR  +       R+   + 
Sbjct: 122 PASQIDVVP---PKNLKEYEGATLTCKIVKISEERKNVVLSRREIVEAERNQKRLQFLEK 178

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGY 722
           V +G LV GVV  VT      ++   G   G I   H+ D     + H +    ++K G 
Sbjct: 179 VHVGDLVKGVVKNVTDFG--AFIDLDGID-GLI---HITDMSWGRINHPS---EILKVGQ 229

Query: 723 EFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
           E + +++ +D E   + L  K    N  + +       +P  + V G V N+   G F+ 
Sbjct: 230 EIEVVVIDVDREKERVSLGLKQKTPNPWENIEEK----YPVGTKVKGKVVNLAPYGAFIE 285

Query: 781 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
               + G    S+    Q+    S+   +GQ V + +LD+N    +++LSLK    +  D
Sbjct: 286 LEPGIEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLSLKALEVNPWD 345

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
            +                      SEL     +  G++++GKV   + +G  +  E   D
Sbjct: 346 KA----------------------SEL-----YPPGTIVKGKVKNFSAYGAYIELENALD 378

Query: 900 VYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
             GFI  + L+           ++ G  I+A +L++ K  + + L +K +  D ++E
Sbjct: 379 --GFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIKQLTEDPWKE 433



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 106/496 (21%), Positives = 195/496 (39%), Gaps = 61/496 (12%)

Query: 184 PTIFHVGQLVSCIVLQLDDD-------KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
           P    VGQ +  ++  L+++       +++  +++ W  +          L+T +EG  +
Sbjct: 50  PESIQVGQEIEVLLESLENEEGMVVLSRQKAAQKQNWDKI----------LKTFEEGGTI 99

Query: 237 TAYVKSIEDHGYILHFGLPSF-----TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 291
           T  VK +   G +L+ G+ +F        +P  NL E  G       L   +V+ I   R
Sbjct: 100 TGKVKQVVKGGLMLNIGVEAFLPASQIDVVPPKNLKEYEG-----ATLTCKIVK-ISEER 153

Query: 292 KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 351
           K V LS      ++   K L+       +  + V   V+ +++N           G   +
Sbjct: 154 KNVVLSRREIVEAERNQKRLQ------FLEKVHVGDLVKGVVKNVTDFGAFIDLDGIDGL 207

Query: 352 FHLQN-TFPTTNWKNDYNQ-HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSH 404
            H+ + ++   N  ++  +  +++   ++ VD     V L L     NP+       P  
Sbjct: 208 IHITDMSWGRINHPSEILKVGQEIEVVVIDVDREKERVSLGLKQKTPNPWENIEEKYPVG 267

Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCV 463
            KV     + KVV +    G  +++          V IS+++  +++ K  +    G  V
Sbjct: 268 TKV-----KGKVVNL-APYGAFIELEP---GIEGLVHISEISWTQKITKPSEVLSMGQEV 318

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
              +L     E   +  LKA              PG +VKGKV    ++GA ++    + 
Sbjct: 319 EAMVLDINKAEQKLSLSLKALEVNPWDKASELYPPGTIVKGKVKNFSAYGAYIELENALD 378

Query: 524 ALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 582
               +  +S   +I  P +  K G E+  +VL      I  T++K L+  K      + E
Sbjct: 379 GFIHVNDLSWTRKINHPSEVLKKGEEIEAKVL-----EIDKTNQKILLGIKQLTEDPWKE 433

Query: 583 ATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
              +     I  G ++KI   G F++  + + G    S++  D   +   +  VGQ V  
Sbjct: 434 IEKKYKVGEIVSGKVSKIASFGAFIQLADEIDGLVHISQISADRVAKVKDVLKVGQEVSA 493

Query: 639 RIMSSIPASRRINLSF 654
           RI+      RRI LS 
Sbjct: 494 RIIKIDKEERRIGLSI 509



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 145/333 (43%), Gaps = 56/333 (16%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAV 1216
            V +G  V G V  V +  A + +   +   + I D ++     PSE+        +G+ +
Sbjct: 179  VHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEI------LKVGQEI 231

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               V+ +++EK+ + L       G+  KT +   +N++     G  V G++  +     G
Sbjct: 232  EVVVIDVDREKERVSL-------GLKQKTPN-PWENIEEKYPVGTKVKGKVVNLAPY--G 281

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
              +++ P + G VH +E+           + +    P      GQ V+  VL+I++    
Sbjct: 282  AFIELEPGIEGLVHISEI----------SWTQKITKPSEVLSMGQEVEAMVLDINKA--- 328

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
                E  L  SL  +   N  D ++++  PG             IV+G VKN ++ G +I
Sbjct: 329  ----EQKLSLSLKALE-VNPWDKASELYPPG------------TIVKGKVKNFSAYGAYI 371

Query: 1397 MLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
             L   LD  + +++LS    +  P +    G+ +  +VL ++  ++++ + +K       
Sbjct: 372  ELENALDGFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIKQLTEDPW 431

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             + E        VG+IV G++ ++ S+G FI +
Sbjct: 432  KEIE----KKYKVGEIVSGKVSKIASFGAFIQL 460



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 39/237 (16%)

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1312
            ++TF  EG  + G++ +++ G  GL++ IG        F     I V  P +        
Sbjct: 90   LKTF-EEGGTITGKVKQVVKG--GLMLNIGVE-----AFLPASQIDVVPPKN-------- 133

Query: 1313 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1372
             L  Y EG  + CK+++IS   +   +V LS R  ++   +              K L+ 
Sbjct: 134  -LKEY-EGATLTCKIVKISEERK---NVVLSRREIVEAERNQ-------------KRLQF 175

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E +    +V+G VKNVT  G FI L   +D  + ++++S G +  P +   +G+ +   
Sbjct: 176  LEKVHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEILKVGQEIEVV 234

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            V+ V+   +RV + LK    +T +  E N      VG  V G++  +  YG FI +E
Sbjct: 235  VIDVDREKERVSLGLK---QKTPNPWE-NIEEKYPVGTKVKGKVVNLAPYGAFIELE 287



 Score = 47.4 bits (111), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 125/587 (21%), Positives = 232/587 (39%), Gaps = 96/587 (16%)

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-ATVESGSVIQAAILDVAKA 930
            F+ GS+++GKV + N   VVV     S+  G I   +     +++ G  I+  +  +   
Sbjct: 12   FVEGSIVKGKVVDKNSKEVVVDIGYKSE--GIIPLSEFEEPESIQVGQEIEVLLESLENE 69

Query: 931  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 990
            E +V L              S ++A +K+   +  K      T+   V+ V +  L+L  
Sbjct: 70   EGMVVL--------------SRQKAAQKQNWDKILKTFEEGGTITGKVKQVVKGGLML-- 113

Query: 991  PEYNHSIGY-ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 1049
                 +IG  A +        P K     +    T   +  S     ++L  + I E E 
Sbjct: 114  -----NIGVEAFLPASQIDVVPPKNLKEYEGATLTCKIVKISEERKNVVLSRREIVEAE- 167

Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
             + KR +      VG LV+  +  +      +    G  G IHIT+++  + N    +  
Sbjct: 168  RNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEI-- 224

Query: 1110 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE--ECDVSIGQRV 1167
              K+GQ +   +I    + +     L + +  P             +E  E    +G +V
Sbjct: 225  -LKVGQEIEVVVIDVDREKERVSLGLKQKTPNP-------------WENIEEKYPVGTKV 270

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLS 1222
             G V  +    A + +   ++  + I + ++     +PSE+        +G+ V   VL 
Sbjct: 271  KGKVVNLAPYGAFIELEPGIEGLVHISEISWTQKITKPSEV------LSMGQEVEAMVLD 324

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
            INK ++ L L L+  +    DK  ++           G IV G++ K  S  G   +++ 
Sbjct: 325  INKAEQKLSLSLKALEVNPWDKASELYPP--------GTIVKGKV-KNFSAYGAY-IELE 374

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
              L G +H  +L           +      P     +G+ ++ KVLEI +T +      L
Sbjct: 375  NALDGFIHVNDL----------SWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKIL---L 421

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             ++             L+ D   P K +EK        IV G V  + S G FI L+ ++
Sbjct: 422  GIKQ------------LTED---PWKEIEK--KYKVGEIVSGKVSKIASFGAFIQLADEI 464

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            D  V +S +S   V   +    +G+ V+ R++ ++   +R+ +++K 
Sbjct: 465  DGLVHISQISADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIKA 511



 Score = 40.8 bits (94), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 144/353 (40%), Gaps = 40/353 (11%)

Query: 1156 FEECD-VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            FEE + + +GQ +   +  ++NE  ++ +SR   AQ    D            + F  G 
Sbjct: 47   FEEPESIQVGQEIEVLLESLENEEGMVVLSRQKAAQKQNWDKIL---------KTFEEGG 97

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFIHEGDIVGGRISKILSG 1273
             +TG V  + K   +L + +  F   +    +D+    N++ +  EG  +  +I KI   
Sbjct: 98   TITGKVKQVVKGGLMLNIGVEAF---LPASQIDVVPPKNLKEY--EGATLTCKIVKISEE 152

Query: 1274 VGGLVV---QIGPHLYGRVHFTELKNICVSDPLSGY-----DEGQFDPLSGYDE----GQ 1321
               +V+   +I      +     L+ + V D + G      D G F  L G D       
Sbjct: 153  RKNVVLSRREIVEAERNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLDGIDGLIHITD 212

Query: 1322 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NM 1380
                ++   S  ++    +E+ +   +D         L     TP    E IE+  P   
Sbjct: 213  MSWGRINHPSEILKVGQEIEVVV---IDVDREKERVSLGLKQKTPNP-WENIEEKYPVGT 268

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             V+G V N+   G FI L   ++  V +S +S    +  P +   +G+ V   VL +   
Sbjct: 269  KVKGKVVNLAPYGAFIELEPGIEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKA 328

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENT 1491
             +++ ++LK  +     ++     S L+  G IV G++K   +YG +I +EN 
Sbjct: 329  EQKLSLSLKALEVNPWDKA-----SELYPPGTIVKGKVKNFSAYGAYIELENA 376


>gi|422404267|ref|ZP_16481321.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876614|gb|EGH10763.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 386

 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 14  LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 72

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 73  YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 129

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 130 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 189

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 190 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 244

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 245 LSVDPERERISLGIK--------QLESDPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLA 296

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       G+ + + I+ V+ ++  I+LS+K
Sbjct: 297 DDIEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 345



 Score = 40.8 bits (94), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 192  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 251

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 252  ERISLGIKQLESDPFSEYVTVN----DKGAIVRGIVKEVDAKGAIITL 295


>gi|116494865|ref|YP_806599.1| 30S ribosomal protein S1 [Lactobacillus casei ATCC 334]
 gi|116105015|gb|ABJ70157.1| SSU ribosomal protein S1P [Lactobacillus casei ATCC 334]
          Length = 439

 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            I++AS  E      + ++PG  V+GKV  + +FGA V   GGV  L  +  +S   + K
Sbjct: 183 AIVEASKAEARKEIFAKIQPGDTVEGKVARLTNFGAFVDL-GGVDGLVHVSEISFDHVDK 241

Query: 539 PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P    KVG E+  +VL V     RI+++ K TL +    I       +   +  G + ++
Sbjct: 242 PSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAPAGS---VLTGTVKRL 298

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              G FV  + GV+G    S++  +    P+ +   GQ V+ +++S  P + R+ LS 
Sbjct: 299 TTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDAHRLALSI 356



 Score = 47.0 bits (110), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            + P   V+G V  +T+ G F+ L   +D  V +S +S  +V+ P     +G+ +  +VL+
Sbjct: 200  IQPGDTVEGKVARLTNFGAFVDLG-GVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLN 258

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V+P   R+ +++K     T  Q   +       G ++ G +KR+ ++G F+ +
Sbjct: 259  VDPDRNRISLSIKA----TLPQPWDDIEEKAPAGSVLTGTVKRLTTFGAFVEV 307



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 142/349 (40%), Gaps = 27/349 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           VK G  VK  V+AV+    IV   G GV+ + P+  +S   I       KVG +L   VL
Sbjct: 23  VKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELSTQPIDDIHDVAKVGDKLDLVVL 82

Query: 555 GVKSK-----RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
               K     +  ++ ++   +     + +  EA + +     +T + K G  V    GV
Sbjct: 83  STVGKDKENGQFLLSKRRLEAQKVWKEIQAKYEAGETITAP--VTSVVKGGLVVNA--GV 138

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDD 665
           +GF P S +  D   E  S Y  G+ ++ +I+   P+  R+ LS             ++ 
Sbjct: 139 RGFVPAS-MVEDHFVEDLSQYK-GKELEFKIIEIEPSENRLILSHRAIVEASKAEARKEI 196

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
             K+  G  V G V  +T     V +   G   G +    ++   +H      V+K G E
Sbjct: 197 FAKIQPGDTVEGKVARLTNFGAFVDL---GGVDGLVHVSEIS--FDHVDKPSDVLKVGQE 251

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              ++L +D + + + LS K +L      +   A      SV+ G V  +   G FV   
Sbjct: 252 IKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAP---AGSVLTGTVKRLTTFGAFVEVF 308

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             + G    S+      A  +     GQ V+  +L V+ +  R+ LS+K
Sbjct: 309 PGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDAHRLALSIK 357



 Score = 43.5 bits (101), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 36/204 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  GD V G++++ L+  G  V   G  + G VH +E+    V  P         D L  
Sbjct: 200  IQPGDTVEGKVAR-LTNFGAFVDLGG--VDGLVHVSEISFDHVDKP--------SDVLK- 247

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               GQ +K KVL +         + LS++++L                   +  + IE+ 
Sbjct: 248  --VGQEIKVKVLNVDPDRN---RISLSIKATLP------------------QPWDDIEEK 284

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P   ++ G VK +T+ G F+ +   ++  V +S +S  +V +P      G+ V  +VLS
Sbjct: 285  APAGSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLS 344

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSE 1459
            V+P + R+ +++K    R A   E
Sbjct: 345  VDPDAHRLALSIKALQERPAGSEE 368


>gi|358012379|ref|ZP_09144189.1| 30S ribosomal protein S1 [Acinetobacter sp. P8-3-8]
          Length = 558

 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 149/353 (42%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 SQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI++ Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDKERNRVSLGLKQLGEDPWLAIMNRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVKL 669
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKA 360

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYE 723
              G  VSG +  +T   + +     G   G     HL+D   + +    ++   K    
Sbjct: 361 HDKGEKVSGTIKSITDFGIFI-----GLPGGIDGLVHLSDISWNEQGEDAIRRYKKGDTV 415

Query: 724 FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
              +L +D E + + L  K        QL +D      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNNDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEASLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 136/324 (41%), Gaps = 41/324 (12%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVRVDR 421
           ++V  ++L  D     V L L     +P+L + NR P   +   +V ++ D      +  
Sbjct: 239 QEVTVKVLKFDKERNRVSLGLKQLGEDPWLAIMNRYPKGSIVKARVTNLTDYGCFAEIAE 298

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  +     V I D  +  V +++++       R RI LG +    
Sbjct: 299 GVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE-------RRRISLGIKQT-- 349

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 +A+ +E     H     G  V G + ++  FG  +  PGG+  L  L  +S  E
Sbjct: 350 ------RANPWEEFAKAHD---KGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNE 400

Query: 536 IVKPG-KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHG 591
             +   +++K G   E V   +  +  RI++  K+          + +  A +R  +  G
Sbjct: 401 QGEDAIRRYKKGDTVEAVILSVDAEGNRISLGIKQLNNDP----FNDFLAANERGALVKG 456

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +T ++  G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR IN
Sbjct: 457 TVTAVDAKGATVKLADEVEASLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSIN 516

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSG 675
           LS   K     ++ +  L +  +G
Sbjct: 517 LSIKAKDEAEEKEAVANLKTTANG 540



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 80/411 (19%), Positives = 169/411 (41%), Gaps = 68/411 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  S +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLSQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDKERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
              ++ +L     A++               +  GS+++ +V    D+G      E   V 
Sbjct: 262  LGEDPWL-----AIMNR-------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE-ANSN 952
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E A ++
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAH 361

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFP 1011
             + +K            V  T+ +I +      + + LP     + + S   +N Q +  
Sbjct: 362  DKGEK------------VSGTIKSITDF----GIFIGLPGGIDGLVHLSDISWNEQGEDA 405

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+  +
Sbjct: 406  IRRYKKGDTVEAVILSVDAEGN--RISLGIKQLNNDPFNDFLAANER-----GALVKGTV 458

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            T +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 459  TAVDAKGATVKLADEVEASLKASEINRDR---VEDATKFLEVGQEVEAKII 506


>gi|406036974|ref|ZP_11044338.1| 30S ribosomal protein S1 [Acinetobacter parvus DSM 16617 = CIP
           108168]
          Length = 560

 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI++ Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDKERNRVSLGLKQLGEDPWLAIMNRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKN 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D    E         K G   
Sbjct: 361 HDKGEKVSGTIKSITDFGIFI-----GLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 129/306 (42%), Gaps = 41/306 (13%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVRVDR 421
           ++V  ++L  D     V L L     +P+L + NR P   +   +V ++ D      +  
Sbjct: 239 QEVTVKVLKFDKERNRVSLGLKQLGEDPWLAIMNRYPKGSIVKARVTNLTDYGCFAEIAE 298

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  +     V I D  +  V +++++       R RI LG +    
Sbjct: 299 GVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE-------RRRISLGIKQT-- 349

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 +A+ +E     H     G  V G + ++  FG  +  PGG+  L  L  +S  E
Sbjct: 350 ------RANPWEEFAKNHD---KGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNE 400

Query: 536 IVKPG-KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHG 591
             +   +++K G   E V   +  +  RI++  K+          + +  A +R  +  G
Sbjct: 401 QGEEAIRRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKG 456

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +T ++  G  V+  + ++     SE+  D   + +    VGQ V+ +I++    SR IN
Sbjct: 457 TVTAVDAKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSIN 516

Query: 652 LSFMMK 657
           LS   K
Sbjct: 517 LSIKAK 522



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 79/410 (19%), Positives = 166/410 (40%), Gaps = 66/410 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDKERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
              ++ +L     A++               +  GS+++ +V    D+G      E   V 
Sbjct: 262  LGEDPWL-----AIMNR-------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E   N 
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKNH 361

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQ 1012
               +K           V  T+ +I +      + + LP     + + S   +N Q +   
Sbjct: 362  DKGEK-----------VSGTIKSITDF----GIFIGLPGGIDGLVHLSDISWNEQGEEAI 406

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 1072
            +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+  +T
Sbjct: 407  RRYKKGDTVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANER-----GALVKGTVT 459

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 460  AVDAKGATVKLADDIEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506


>gi|282856368|ref|ZP_06265647.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
 gi|282585739|gb|EFB91028.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
          Length = 518

 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 174/450 (38%), Gaps = 53/450 (11%)

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI 287
           E +  G V+   V    D G+++  G     GFLP      +  +D KP   +       
Sbjct: 28  EEIARGKVIEGTVVEKTDGGWLVDVGYKC-EGFLPEREWTHHILVDDKPAPEI------- 79

Query: 288 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVS-TRVQSILENGVMLSFLTYFT 346
                        D +   VT    G    LLV        R  + LE+ V  + +    
Sbjct: 80  ------------GDKIEVQVTSKRDGEEAQLLVSRWRCEFDRRWAELESKVKANDIITVK 127

Query: 347 G--------TVDIFHLQNTFPTTNWKNDYN-------QHKKVNARILFVDPTSRAVGLTL 391
           G         V+ F+L+   P ++   +         + ++   R+L +D   R + L+ 
Sbjct: 128 GIRKVKGGLMVNCFNLEGFIPISHLAEEGRGVNPGRFEGEEFQVRLLEMDKRKRRLVLSR 187

Query: 392 NPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA 446
              L  + +       S V VGD+ D +  V      GL +++   P+     V +S+V+
Sbjct: 188 RSLLDEDLSAKREKFYSEVNVGDVLDGT--VSSVTTFGLFVNV--GPLD--GLVHVSEVS 241

Query: 447 EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
            +   K  + YK+G  V+V+++G        +  ++ +            +     KG V
Sbjct: 242 WQRSSKSRETYKKGDAVKVKVIGIDKENNKISLSIRQAQGNPWDTVMERWQKDQQTKGVV 301

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
             V  FGA V+   G++ L  +  +S   I  P +    G E+   VL +  + KR+++ 
Sbjct: 302 TNVTDFGAFVEVEPGIEGLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKKRMSLG 361

Query: 565 HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
           +K+ L      I   Y +  D  +    + ++   G FV    GV+G    S+L      
Sbjct: 362 YKQ-LHDPWKGIEERYTKGQDITVK---VVRLADFGAFVEIEKGVEGLIHISQLSTHRVE 417

Query: 625 EPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +P  +   GQ V  R++   PA RRI LS 
Sbjct: 418 KPGDVLQEGQEVTARVLEVNPAERRIRLSI 447



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK---FKVGAEL 549
           +S+V  G V+ G V +V +FG  V     V  L  L H+SE    +  K    +K G  +
Sbjct: 203 YSEVNVGDVLDGTVSSVTTFGLFVN----VGPLDGLVHVSEVSWQRSSKSRETYKKGDAV 258

Query: 550 VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
             +V+G+  ++ +I+++ ++        ++  + +      T G +T +   G FV    
Sbjct: 259 KVKVIGIDKENNKISLSIRQAQGNPWDTVMERWQKDQQ---TKGVVTNVTDFGAFVEVEP 315

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDD 665
           G++G     +L       P  + H GQ V+  ++   P  +R++L +  +  P +  E+ 
Sbjct: 316 GIEGLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKKRMSLGYKQLHDPWKGIEER 375

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
             K   +   VV +    A V   I KG  +G I    L+ H
Sbjct: 376 YTKGQDITVKVVRLADFGAFV--EIEKGV-EGLIHISQLSTH 414



 Score = 44.3 bits (103), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 113/282 (40%), Gaps = 46/282 (16%)

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
            RF  G+     +L ++K K+ L L  R     + D+ +    +   + ++ GD++ G +S
Sbjct: 163  RFE-GEEFQVRLLEMDKRKRRLVLSRRS----LLDEDLSAKREKFYSEVNVGDVLDGTVS 217

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
             + +   GL V +GP L G VH +E+     S     Y +G             VK KV+
Sbjct: 218  SVTTF--GLFVNVGP-LDGLVHVSEVSWQRSSKSRETYKKGDA-----------VKVKVI 263

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
             I +       + LS+R +      T       D  T                 +G V N
Sbjct: 264  GIDKE---NNKISLSIRQAQGNPWDTVMERWQKDQQT-----------------KGVVTN 303

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            VT  G F+ +   ++  + + +LS   ++ P +    G+ V   VL ++P  KR+ +  K
Sbjct: 304  VTDFGAFVEVEPGIEGLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKKRMSLGYK 363

Query: 1449 T-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
               D     +       ++ V      ++ R+  +G F+ IE
Sbjct: 364  QLHDPWKGIEERYTKGQDITV------KVVRLADFGAFVEIE 399


>gi|347753863|ref|YP_004861427.1| 30S ribosomal protein S1 [Candidatus Chloracidobacterium
           thermophilum B]
 gi|347586381|gb|AEP10911.1| SSU ribosomal protein S1P [Candidatus Chloracidobacterium
           thermophilum B]
          Length = 562

 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 32/346 (9%)

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
           ++V G+V  +  +GA +   GG+  L  +  MS   + KP   F +G  +  +VL    +
Sbjct: 198 VIVSGQVKNLTDYGAFIDL-GGIDGLLHVTDMSWGRLPKPSDMFNIGDTIQVKVLKFDRE 256

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
            +R+++ +K+ L      +   Y +     I  G +  +  +G FV    GV+G    SE
Sbjct: 257 RERVSLGYKQLLPDPWDTVTERYRKND---IVKGRVVSVTDYGAFVELEEGVEGLVHVSE 313

Query: 618 LGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV----KLGSL 672
           +      + PS +  VG  V+  I+   PA+RRI+L   MK  + +  D V     +GS 
Sbjct: 314 MTWSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLG--MKQIQPNPWDSVAQRYSVGSR 371

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFDQL 727
           VSG V  +T     V +       G     H++D      ++H +    V+K G   + +
Sbjct: 372 VSGKVRNLTDFGAFVEI-----EDGIDGLIHVSDLSWTKRVKHPS---DVLKKGQSVEAI 423

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +  +D  +  L LS K    N+ ++     SH     VV G V  +   G FV     + 
Sbjct: 424 ITNIDTANRRLSLSIKDLEPNAWERFFQ--SH-RVGDVVTGKVVRLAGFGVFVELEEGIE 480

Query: 787 GFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLK 831
           G    S+  D QR D  ++   VGQ +   IL ++    +I LS +
Sbjct: 481 GLCHISELSD-QRVDRPESVVSVGQVLPFKILKLDESNRKIGLSAR 525



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 168/393 (42%), Gaps = 61/393 (15%)

Query: 189 VGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           +G+ ++  +L+L+  +  I   RK+ L   ++   K  +L  + E ++++  VK++ D+G
Sbjct: 153 IGREMTFRILKLNKKRNNIVLSRKVLLEEEMTA-RKAETLRMLDENVIVSGQVKNLTDYG 211

Query: 248 YILHFGLPSFTGFLPRNNLAENSGIDVKP------GLLLQGVVRSIDRTRKVVYLS---- 297
             +  G     G L   +++   G   KP      G  +Q  V   DR R+ V L     
Sbjct: 212 AFIDLG--GIDGLLHVTDMS--WGRLPKPSDMFNIGDTIQVKVLKFDRERERVSLGYKQL 267

Query: 298 -SDP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
             DP DTV++   K+             +V  RV S+ + G  +       G V +  + 
Sbjct: 268 LPDPWDTVTERYRKN------------DIVKGRVVSVTDYGAFVELEEGVEGLVHVSEMT 315

Query: 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY--LLHNRAPPSHV--K 406
            +    +     +   +V A IL VDP +R + L +     NP+  +    +  S V  K
Sbjct: 316 WSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLGMKQIQPNPWDSVAQRYSVGSRVSGK 375

Query: 407 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRV 465
           V ++ D    V ++ G+  L             + +SD++  + V+      K+G  V  
Sbjct: 376 VRNLTDFGAFVEIEDGIDGL-------------IHVSDLSWTKRVKHPSDVLKKGQSVEA 422

Query: 466 RILGF----RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
            I       R L  L+   L+ +A+E    +H   + G VV GKV+ +  FG  V+   G
Sbjct: 423 IITNIDTANRRL-SLSIKDLEPNAWERFFQSH---RVGDVVTGKVVRLAGFGVFVELEEG 478

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++ LC +  +S+  + +P     VG  L F++L
Sbjct: 479 IEGLCHISELSDQRVDRPESVVSVGQVLPFKIL 511



 Score = 48.1 bits (113), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVG--AELVFRVLG 555
           G  V GKV  +  FGA V+   G+  L  +  +S  + VK P    K G   E +   + 
Sbjct: 369 GSRVSGKVRNLTDFGAFVEIEDGIDGLIHVSDLSWTKRVKHPSDVLKKGQSVEAIITNID 428

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
             ++R++++ K     +      S+       +  G + ++   G FV    G++G    
Sbjct: 429 TANRRLSLSIKDLEPNAWERFFQSHRVGD---VVTGKVVRLAGFGVFVELEEGIEGLCHI 485

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL       P S+  VGQV+  +I+    ++R+I LS
Sbjct: 486 SELSDQRVDRPESVVSVGQVLPFKILKLDESNRKIGLS 523



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 11/125 (8%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            +  E +  L  N+IV G VKN+T  G FI L   +D  + ++++S G +  P   F IG 
Sbjct: 186  RKAETLRMLDENVIVSGQVKNLTDYGAFIDLG-GIDGLLHVTDMSWGRLPKPSDMFNIGD 244

Query: 1428 LVAGRVLSVEPLSKRVEVTLKT---SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1484
             +  +VL  +   +RV +  K        T ++    N       DIV G++  V  YG 
Sbjct: 245  TIQVKVLKFDRERERVSLGYKQLLPDPWDTVTERYRKN-------DIVKGRVVSVTDYGA 297

Query: 1485 FITIE 1489
            F+ +E
Sbjct: 298  FVELE 302



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G V+N+T  G F+ +   +D  + +S+LS    V+ P      G+ V   + +++  +
Sbjct: 372  VSGKVRNLTDFGAFVEIEDGIDGLIHVSDLSWTKRVKHPSDVLKKGQSVEAIITNIDTAN 431

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ +++K  +     +       +  VGD+V G++ R+  +G+F+ +E
Sbjct: 432  RRLSLSIKDLEPNAWERF----FQSHRVGDVVTGKVVRLAGFGVFVELE 476


>gi|115380643|ref|ZP_01467579.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
 gi|115362348|gb|EAU61647.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 571

 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 147/360 (40%), Gaps = 28/360 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  ++K G V+KG V  +  +GA +   GG+  L  +  MS   I  P + F VG E+  
Sbjct: 201 TLKNLKEGAVLKGVVKNLTDYGAFIDL-GGIDGLLHITDMSWGRIGHPSEMFNVGDEVRV 259

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL      +R+++  K+            Y   T      G +  I  +G F+    GV
Sbjct: 260 VVLKFDPAQERVSLGLKQIQEDPWHRADEKYPVGTR---VRGKVVSITDYGAFIEIEQGV 316

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
           +G    SE+      + PS +  VGQ V+  ++   P ++RI L        P  + ED 
Sbjct: 317 EGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQIEQNPWTLLEDK 376

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKP 720
              +GS++ G +  VT   + V     G  +G     H++D      ++H      + K 
Sbjct: 377 Y-PIGSVIKGQIRNVTDFGIFV-----GVEEGVDGLVHVSDISWTQRIKHPG---ELYKK 427

Query: 721 GYEFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E + + L +D E+    L  K    +  + L   +      S V G V  + + G FV
Sbjct: 428 GDEVEAVXLNIDVENERFSLGIKQLQPDPWETL---SERTPVGSRVKGKVTKVTDFGAFV 484

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                + G    S+  + +  +        Q V   I+D+N++  ++ LS+K      +D
Sbjct: 485 EIEPGIEGLVHVSELREERVENPRDVVQEAQEVDVKIIDINTQDRKVALSIKALIGEGSD 544



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L    +++G VKN+T  G FI L   +D  + ++++S G +  P + F +G  V 
Sbjct: 200  ETLKNLKEGAVLKGVVKNLTDYGAFIDLG-GIDGLLHITDMSWGRIGHPSEMFNVGDEVR 258

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              VL  +P  +RV + LK        +++        VG  V G++  +  YG FI IE 
Sbjct: 259  VVVLKFDPAQERVSLGLKQIQEDPWHRAD----EKYPVGTRVRGKVVSITDYGAFIEIEQ 314



 Score = 48.1 bits (113), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 146/352 (41%), Gaps = 43/352 (12%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
           +L+ ++EG VL   VK++ D+G  +  G     G L   +++   G    P  +      
Sbjct: 201 TLKNLKEGAVLKGVVKNLTDYGAFIDLG--GIDGLLHITDMS--WGRIGHPSEMF----- 251

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL------VP-GMMVSTRVQSILENGVM 338
           ++    +VV L  DP    + V+  LK I  D         P G  V  +V SI + G  
Sbjct: 252 NVGDEVRVVVLKFDP--AQERVSLGLKQIQEDPWHRADEKYPVGTRVRGKVVSITDYGAF 309

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  T    +        ++V A +L +DP ++ + L +     NP
Sbjct: 310 IEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQIEQNP 369

Query: 394 Y-LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVR 451
           + LL ++ P   V  G I + +         G+ + +          V +SD++  + ++
Sbjct: 370 WTLLEDKYPIGSVIKGQIRNVTD-------FGIFVGVEE---GVDGLVHVSDISWTQRIK 419

Query: 452 KLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKP-GMVVKGKVI 507
              + YK+G  V    L      E  + GI  L+   +E    T S+  P G  VKGKV 
Sbjct: 420 HPGELYKKGDEVEAVXLNIDVENERFSLGIKQLQPDPWE----TLSERTPVGSRVKGKVT 475

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
            V  FGA V+   G++ L  +  + E  +  P    +   E+  +++ + ++
Sbjct: 476 KVTDFGAFVEIEPGIEGLVHVSELREERVENPRDVVQEAQEVDVKIIDINTQ 527



 Score = 47.4 bits (111), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G V ++T  G FI + + ++  V +S +S    ++ P K   +G+ V   VL ++P +
Sbjct: 296  VRGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKA 355

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            KR+ + +K  +    +  E        +G ++ GQI+ V  +G+F+ +E 
Sbjct: 356  KRIALGMKQIEQNPWTLLE----DKYPIGSVIKGQIRNVTDFGIFVGVEE 401


>gi|417983453|ref|ZP_12624090.1| SSU ribosomal protein S1p [Lactobacillus casei 21/1]
 gi|417992888|ref|ZP_12633240.1| SSU ribosomal protein S1p [Lactobacillus casei CRF28]
 gi|417996241|ref|ZP_12636523.1| SSU ribosomal protein S1p [Lactobacillus casei M36]
 gi|418002008|ref|ZP_12642135.1| SSU ribosomal protein S1p [Lactobacillus casei UCD174]
 gi|418015248|ref|ZP_12654823.1| SSU ribosomal protein S1p [Lactobacillus casei Lpc-37]
 gi|410528200|gb|EKQ03059.1| SSU ribosomal protein S1p [Lactobacillus casei 21/1]
 gi|410532679|gb|EKQ07381.1| SSU ribosomal protein S1p [Lactobacillus casei CRF28]
 gi|410535699|gb|EKQ10314.1| SSU ribosomal protein S1p [Lactobacillus casei M36]
 gi|410545159|gb|EKQ19464.1| SSU ribosomal protein S1p [Lactobacillus casei UCD174]
 gi|410551724|gb|EKQ25767.1| SSU ribosomal protein S1p [Lactobacillus casei Lpc-37]
          Length = 439

 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            I++AS  E      + ++PG  V+GKV  + +FGA V   GGV  L  +  +S   + K
Sbjct: 183 AIVEASKAEARKEIFAKIQPGDTVEGKVARLTNFGAFVDL-GGVDGLVHVSEISFDHVDK 241

Query: 539 PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P    KVG E+  +VL V     RI+++ K TL +    I       +   +  G + ++
Sbjct: 242 PSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAPAGS---VLTGTVKRL 298

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              G FV  + GV+G    S++  +    P+ +   GQ V+ +++S  P + R+ LS 
Sbjct: 299 TTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDAHRLALSI 356



 Score = 47.0 bits (110), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            + P   V+G V  +T+ G F+ L   +D  V +S +S  +V+ P     +G+ +  +VL+
Sbjct: 200  IQPGDTVEGKVARLTNFGAFVDLG-GVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLN 258

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V+P   R+ +++K     T  Q   +       G ++ G +KR+ ++G F+ +
Sbjct: 259  VDPDRNRISLSIKA----TLPQPWDDIEEKAPAGSVLTGTVKRLTTFGAFVEV 307



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 142/349 (40%), Gaps = 27/349 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           VK G  VK  V+AV+    IV   G GV+ + P+  +S   I       KVG +L   VL
Sbjct: 23  VKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELSTQPIDDIHDVAKVGDKLDLVVL 82

Query: 555 GVKSK-----RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
               K     +  ++ ++   +     + +  EA + +     +T + K G  V    GV
Sbjct: 83  STVGKDKENGQFLLSKRRLEAQKVWKEIQAKYEAGETITAP--VTSVVKGGLVVNA--GV 138

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDD 665
           +GF P S +  D   E  S Y  G+ ++ +I+   P+  R+ LS             ++ 
Sbjct: 139 RGFVPAS-MVEDHFVEDLSQYK-GKELEFKIIEIEPSENRLILSHRAIVEASKAEARKEI 196

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
             K+  G  V G V  +T     V +   G   G +    ++   +H      V+K G E
Sbjct: 197 FAKIQPGDTVEGKVARLTNFGAFVDL---GGVDGLVHVSEIS--FDHVDKPSDVLKVGQE 251

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              ++L +D + + + LS K +L      +   A      SV+ G V  +   G FV   
Sbjct: 252 IKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAP---AGSVLTGTVKRLTTFGAFVEVF 308

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             + G    S+      A  +     GQ V+  +L V+ +  R+ LS+K
Sbjct: 309 PGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDAHRLALSIK 357



 Score = 43.5 bits (101), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 36/204 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  GD V G++++ L+  G  V   G  + G VH +E+    V  P         D L  
Sbjct: 200  IQPGDTVEGKVAR-LTNFGAFVDLGG--VDGLVHVSEISFDHVDKP--------SDVLK- 247

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               GQ +K KVL +         + LS++++L                   +  + IE+ 
Sbjct: 248  --VGQEIKVKVLNVDPDRN---RISLSIKATLP------------------QPWDDIEEK 284

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P   ++ G VK +T+ G F+ +   ++  V +S +S  +V +P      G+ V  +VLS
Sbjct: 285  APAGSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLS 344

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSE 1459
            V+P + R+ +++K    R A   E
Sbjct: 345  VDPDAHRLALSIKALQERPAGSEE 368


>gi|419841068|ref|ZP_14364446.1| putative ribosomal protein S1 [Fusobacterium necrophorum subsp.
           funduliforme ATCC 51357]
 gi|421500321|ref|ZP_15947332.1| putative ribosomal protein S1 [Fusobacterium necrophorum subsp.
           funduliforme Fnf 1007]
 gi|386906087|gb|EIJ70832.1| putative ribosomal protein S1 [Fusobacterium necrophorum subsp.
           funduliforme ATCC 51357]
 gi|402268735|gb|EJU18101.1| putative ribosomal protein S1 [Fusobacterium necrophorum subsp.
           funduliforme Fnf 1007]
          Length = 545

 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 135/521 (25%), Positives = 225/521 (43%), Gaps = 78/521 (14%)

Query: 187 FHVGQLVSCIV---LQLDDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
           + VG  V  ++   L+ DDD++ +   +++I L      +      +TV  G +    VK
Sbjct: 64  YQVGDQVEVVLVGLLEADDDQEVLIASRKRIDLEDNWKHIEDSYENKTVLSGKI----VK 119

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            I+  GYI+   L  + GFLP N+L+E   I+ K G  + G  ++ID   K +    + D
Sbjct: 120 KIK-GGYIVEASL--YQGFLP-NSLSE---INEKDGETMVG--KNIDVIVKDIK-QDNRD 169

Query: 302 TVSKCVTKDLKGISI-------DLLVPGMMVSTRVQSILENG--VMLSFLTYFTGTVDIF 352
             SK +T   K I++         L  G +V+  V  I++ G  VM++ L  F    ++ 
Sbjct: 170 KRSKKITFSKKDITLMKEEEEFAKLTVGDVVTCTVSGIMDFGLSVMINHLRGFIHISEVS 229

Query: 353 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVKV 407
             +      + K+ Y+  + V A+IL +D   + + L++     NP+ L   A     +V
Sbjct: 230 WKR----LDDLKDLYSVGQTVEAKILSLDEEKKNIKLSIKQLTENPWDLSKDAFHEGDEV 285

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRVR 466
                + KV RV    G  +++          V ISD A  + R  +E+  K G  V+V+
Sbjct: 286 -----EGKVTRV-LAYGAFVELTE---GVEGLVHISDFAWNKKRINMEEYAKVGETVKVK 336

Query: 467 ILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK-----VIAVDSFGAIVQFPG 520
           IL F      L  G      F+ LV    DV      +GK     ++ +  FG   +   
Sbjct: 337 ILEFNPEARKLKLG------FKQLVENPWDVAEEKFGEGKELTASILDIKPFGLFAEIES 390

Query: 521 GVKALCPLPHMSEFEIVKPGKK---FKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL- 574
           GV       H S+F    PG++   +++G  + F+VL   V+ K+I  + K  L KS   
Sbjct: 391 GVDVFV---HSSDFGW--PGEEPANYQIGDSISFKVLELNVEDKKIKGSIK-ALKKSPWD 444

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
             +  Y   T        I  I   G FV    G+ GF P   +  D   +    + +GQ
Sbjct: 445 KAMEEYKVGT---TVEKKIKNIMDFGLFVELTKGIDGFIPTQFVSKDFVKDLKDKFEIGQ 501

Query: 635 VVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGS 671
           +VK +I+     +++I LS     + +  R  +D L K G+
Sbjct: 502 IVKAQIVEINQETQKIKLSIKKIELEEQKREDQDLLAKYGT 542



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 27/254 (10%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMSSIPASR 648
            G +T++  +G FV    GV+G    S+   +        Y  VG+ VK +I+   P +R
Sbjct: 286 EGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEAR 345

Query: 649 RINLSF---MMKPTRVSEDDLVKLGSLVSGVVDV-------VTPNAVVVYVIAKGYSKGT 698
           ++ L F   +  P  V+E+   +   L + ++D+          + V V+V +  +    
Sbjct: 346 KLKLGFKQLVENPWDVAEEKFGEGKELTASILDIKPFGLFAEIESGVDVFVHSSDFG--- 402

Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            P E  A++    ++   V+       +L V D +    + + K S  + A +       
Sbjct: 403 WPGEEPANYQIGDSISFKVL-------ELNVEDKKIKGSIKALKKSPWDKAME------E 449

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
               + V   + NI++ G FV     + GF P          DL   + +GQ V++ I++
Sbjct: 450 YKVGTTVEKKIKNIMDFGLFVELTKGIDGFIPTQFVSKDFVKDLKDKFEIGQIVKAQIVE 509

Query: 819 VNSETGRITLSLKQ 832
           +N ET +I LS+K+
Sbjct: 510 INQETQKIKLSIKK 523



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 167/386 (43%), Gaps = 64/386 (16%)

Query: 1110 NFKIGQTVTAR---IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE---CDVSI 1163
            N K G+T+  +   +I K  K D +         +   +T S+    L+ EE     +++
Sbjct: 144  NEKDGETMVGKNIDVIVKDIKQDNRDK-------RSKKITFSKKDITLMKEEEEFAKLTV 196

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  VT  V  +  ++ L  +  HL+   FI  S      L + +  + +G+ V   +LS+
Sbjct: 197  GDVVTCTVSGI-MDFGLSVMINHLRG--FIHISEVSWKRLDDLKDLYSVGQTVEAKILSL 253

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            ++EKK ++L ++     +++   D+S D      HEGD V G+++++L+   G  V++  
Sbjct: 254  DEEKKNIKLSIKQ----LTENPWDLSKDAF----HEGDEVEGKVTRVLA--YGAFVELTE 303

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
             + G VH ++            +++ + +       G+ VK K+LE +   R    ++L 
Sbjct: 304  GVEGLVHISDF----------AWNKKRINMEEYAKVGETVKVKILEFNPEAR---KLKLG 350

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHL-EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             +  ++     N  D++ +    GK L   I D+ P              G F  +   +
Sbjct: 351  FKQLVE-----NPWDVAEEKFGEGKELTASILDIKPF-------------GLFAEIESGV 392

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1462
            D  V  S+   G+       + IG  ++ +VL +    K+++ ++K        ++    
Sbjct: 393  DVFVHSSDF--GWPGEEPANYQIGDSISFKVLELNVEDKKIKGSIKALKKSPWDKA---- 446

Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITI 1488
            +    VG  V  +IK +  +GLF+ +
Sbjct: 447  MEEYKVGTTVEKKIKNIMDFGLFVEL 472


>gi|191638372|ref|YP_001987538.1| 30S ribosomal protein S1 [Lactobacillus casei BL23]
 gi|227535138|ref|ZP_03965187.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239631542|ref|ZP_04674573.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|385820073|ref|YP_005856460.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei
           LC2W]
 gi|385823274|ref|YP_005859616.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei
           BD-II]
 gi|409997237|ref|YP_006751638.1| 30S ribosomal protein S1 [Lactobacillus casei W56]
 gi|417980664|ref|ZP_12621344.1| SSU ribosomal protein S1p [Lactobacillus casei 12A]
 gi|417986742|ref|ZP_12627307.1| SSU ribosomal protein S1p [Lactobacillus casei 32G]
 gi|417989630|ref|ZP_12630132.1| SSU ribosomal protein S1p [Lactobacillus casei A2-362]
 gi|417999070|ref|ZP_12639283.1| SSU ribosomal protein S1p [Lactobacillus casei T71499]
 gi|418005081|ref|ZP_12645080.1| SSU ribosomal protein S1p [Lactobacillus casei UW1]
 gi|418007972|ref|ZP_12647843.1| SSU ribosomal protein S1p [Lactobacillus casei UW4]
 gi|418010830|ref|ZP_12650601.1| SSU ribosomal protein S1p [Lactobacillus casei Lc-10]
 gi|190712674|emb|CAQ66680.1| 30S Ribosomal protein S1 [Lactobacillus casei BL23]
 gi|227187183|gb|EEI67250.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239526007|gb|EEQ65008.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|327382400|gb|AEA53876.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei
           LC2W]
 gi|327385601|gb|AEA57075.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei
           BD-II]
 gi|406358249|emb|CCK22519.1| 30S ribosomal protein S1 homolog [Lactobacillus casei W56]
 gi|410524476|gb|EKP99384.1| SSU ribosomal protein S1p [Lactobacillus casei 32G]
 gi|410524987|gb|EKP99894.1| SSU ribosomal protein S1p [Lactobacillus casei 12A]
 gi|410537723|gb|EKQ12293.1| SSU ribosomal protein S1p [Lactobacillus casei A2-362]
 gi|410540010|gb|EKQ14532.1| SSU ribosomal protein S1p [Lactobacillus casei T71499]
 gi|410547731|gb|EKQ21957.1| SSU ribosomal protein S1p [Lactobacillus casei UW4]
 gi|410547859|gb|EKQ22083.1| SSU ribosomal protein S1p [Lactobacillus casei UW1]
 gi|410553409|gb|EKQ27412.1| SSU ribosomal protein S1p [Lactobacillus casei Lc-10]
          Length = 439

 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            I++AS  E      + ++PG  V+GKV  + +FGA V   GGV  L  +  +S   + K
Sbjct: 183 AIVEASKAEARKEIFAKIQPGDTVEGKVARLTNFGAFVDL-GGVDGLVHVSEISFDHVDK 241

Query: 539 PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P    KVG E+  +VL V     RI+++ K TL +    I       +   +  G + ++
Sbjct: 242 PSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAPAGS---VLTGTVKRL 298

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              G FV  + GV+G    S++  +    P+ +   GQ V+ +++S  P + R+ LS 
Sbjct: 299 TTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDAHRLALSI 356



 Score = 46.6 bits (109), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            + P   V+G V  +T+ G F+ L   +D  V +S +S  +V+ P     +G+ +  +VL+
Sbjct: 200  IQPGDTVEGKVARLTNFGAFVDLG-GVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLN 258

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V+P   R+ +++K     T  Q   +       G ++ G +KR+ ++G F+ +
Sbjct: 259  VDPDRNRISLSIKA----TLPQPWDDIEEKAPAGSVLTGTVKRLTTFGAFVEV 307



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 142/349 (40%), Gaps = 27/349 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           VK G  VK  V+AV+    IV   G GV+ + P+  +S   I       KVG +L   VL
Sbjct: 23  VKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELSTQPIDDIHDVAKVGDKLDLVVL 82

Query: 555 GVKSK-----RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
               K     +  ++ ++   +     + +  EA + +     +T + K G  V    GV
Sbjct: 83  STVGKDKENGQFLLSKRRLEAQKVWKEIQAKYEAGETITAP--VTSVVKGGLVVNA--GV 138

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDD 665
           +GF P S +  D   E  S Y  G+ ++ +I+   P+  R+ LS             ++ 
Sbjct: 139 RGFVPAS-MVEDHFVEDLSQYK-GKELEFKIIEIEPSENRLILSHRAIVEASKAEARKEI 196

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
             K+  G  V G V  +T     V +   G   G +    ++   +H      V+K G E
Sbjct: 197 FAKIQPGDTVEGKVARLTNFGAFVDL---GGVDGLVHVSEIS--FDHVDKPSDVLKVGQE 251

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              ++L +D + + + LS K +L      +   A      SV+ G V  +   G FV   
Sbjct: 252 IKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAP---AGSVLTGTVKRLTTFGAFVEVF 308

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             + G    S+      A  +     GQ V+  +L V+ +  R+ LS+K
Sbjct: 309 PGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDAHRLALSIK 357



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 36/204 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I  GD V G++++ L+  G  V   G  + G VH +E+    V  P         D L  
Sbjct: 200  IQPGDTVEGKVAR-LTNFGAFVDLGG--VDGLVHVSEISFDHVDKP--------SDVLK- 247

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               GQ +K KVL +         + LS++++L                   +  + IE+ 
Sbjct: 248  --VGQEIKVKVLNVDPDRN---RISLSIKATLP------------------QPWDDIEEK 284

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P   ++ G VK +T+ G F+ +   ++  V +S +S  +V +P      G+ V  +VLS
Sbjct: 285  APAGSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLS 344

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSE 1459
            V+P + R+ +++K    R A   E
Sbjct: 345  VDPDAHRLALSIKALQERPAGSEE 368


>gi|302338566|ref|YP_003803772.1| 30S ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293]
 gi|301635751|gb|ADK81178.1| ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293]
          Length = 571

 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 33/355 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+   G VV G V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V
Sbjct: 196 SETSIGDVVTGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDYVKKGQEVELKV 254

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + +  + ++I ++ K       LA  + Y +  D  I  G +TK+   G F+    G++G
Sbjct: 255 IKLDPEEQKINLSLKHFTPDPWLAFEAKY-QVND--IVKGTVTKLTDFGAFIELEEGIEG 311

Query: 612 FAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-- 668
            A  SEL        P  + ++G  V   I+S      R++L   +K  R +  D +   
Sbjct: 312 LAHISELSWVKRINHPKEVLNIGDEVDVMILSYDIQQGRVSLG--LKQVRPNPWDTIADS 369

Query: 669 --LGS-LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK---SVIKPGY 722
             +G+ L   VV +    A V         +G     H +D L     +K   SV+K G 
Sbjct: 370 YPVGTRLTRKVVKITNAGAFV------ELEEGIDGFLH-SDDLSWTRKIKNPGSVLKAGE 422

Query: 723 EFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
           E D +++ +D ES  + L  K    +  Q L       +P  SV+ G + ++ + G FVR
Sbjct: 423 EIDVVVISVDEESHRIRLGVKQLEEDPWQSL----RKTYPKGSVIEGEITSVTDFGVFVR 478

Query: 781 FLGRLTGFAPR---SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             G + G   +   ++  +    ++   +  G+ +   + D+N  + R++LS+++
Sbjct: 479 VPGGIEGLINKFNLTQPGEEVSDEVLSRFSPGEKITCLVTDINPHSQRLSLSIRE 533



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 194/485 (40%), Gaps = 66/485 (13%)

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           ++AS  E  + +  +++ G +V+G VI V      V    G K+   +P +SEFE   P 
Sbjct: 15  IQASLQEEYLKSLEELEEGQLVEGSVIQVGPENVFVDV--GYKSEGKIP-LSEFETT-PE 70

Query: 541 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATD-RLITHGWITKIEKH 599
               V   LV R  G K  ++ V+  K  VK          EA D      G   K+ K 
Sbjct: 71  IGDIVNVVLV-RKEG-KGGQVVVSKNKADVK---LFWKELREAFDNEQPVEGTFDKVIKG 125

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV-GQVVKCRIMSS----IPASRRINLSF 654
           G  V   +GV+GF P S+  +     P     + G+ +  R+ S     I  SRR    F
Sbjct: 126 GFEVDLGHGVRGFCPMSKTDVQRVENPDEYIGLKGKFLIDRLYSDNKLKIVLSRR---GF 182

Query: 655 MMKPTRVSEDDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 710
           M +     ++       +G +V+G V   T     + +   G   G +   H+ D    H
Sbjct: 183 MERDIAERKEKFFSETSIGDVVTGTVKSFTSFGAFIDL---GGFDGLL---HINDMSWGH 236

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
            T  K  +K G E + +++ LD E   + LS K+        L  +A +   N +V G V
Sbjct: 237 VTRPKDYVKKGQEVELKVIKLDPEEQKINLSLKH--FTPDPWLAFEAKY-QVNDIVKGTV 293

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITL 828
             + + G F+     + G A  S+    +R +  K    +G  V   IL  + + GR++L
Sbjct: 294 TKLTDFGAFIELEEGIEGLAHISELSWVKRINHPKEVLNIGDEVDVMILSYDIQQGRVSL 353

Query: 829 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
            LKQ   +  D             IA               + + +G+ +  KV +  + 
Sbjct: 354 GLKQVRPNPWDT------------IA---------------DSYPVGTRLTRKVVKITNA 386

Query: 889 GVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 942
           G  V  EE      HSD   +    +  G+ +++G  I   ++ V +    + L +K + 
Sbjct: 387 GAFVELEEGIDGFLHSDDLSWTRKIKNPGSVLKAGEEIDVVVISVDEESHRIRLGVKQLE 446

Query: 943 IDRFR 947
            D ++
Sbjct: 447 EDPWQ 451



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 9/111 (8%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V G VK+ TS G FI L    D  + ++++S G+V  P+     G+ V  +V+ ++P  
Sbjct: 203  VVTGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDYVKKGQEVELKVIKLDPEE 261

Query: 1441 KRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +++ ++LK  T D   A +++        V DIV G + ++  +G FI +E
Sbjct: 262  QKINLSLKHFTPDPWLAFEAK------YQVNDIVKGTVTKLTDFGAFIELE 306


>gi|148658063|ref|YP_001278268.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570173|gb|ABQ92318.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
          Length = 514

 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 10/134 (7%)

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
            +TPG+   +++DL+P M ++G V ++   G F+ +    D  V +S +SD  +ESP    
Sbjct: 128  ETPGRP-RRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLV 186

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSD-------SRTASQSEIN--NLSNLHVGDIVIG 1474
             IG  V  RV SVEP  +R+ +T++T +        R   + E++   L+ L VGD V G
Sbjct: 187  KIGDTVKVRVKSVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEG 246

Query: 1475 QIKRVESYGLFITI 1488
             +  +  +G+F+ I
Sbjct: 247  TVTGMAPFGVFVDI 260



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 34/262 (12%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +T I  +G FV    G  G    SE+       PS +  +G  VK R+ S  P  RR
Sbjct: 146 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 205

Query: 650 INLSFMMKP----------TRVSEDDLVKLGSL-----VSGVVDVVTPNAVVVYVIAKGY 694
           I+L+   K            +  E D  KL +L     V G V  + P  V V +   G 
Sbjct: 206 ISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEGTVTGMAPFGVFVDI---GV 262

Query: 695 SK-GTIPTEHLAD-HLEHATVMKSVIKPG--YEFDQLLVLDNESSNLLLSAKYSLINSAQ 750
            K G +    LA+  +E A   + V++ G  Y F ++L +D   + + LS + +     Q
Sbjct: 263 GKDGLVHVSELAEGRVEKA---EDVVQVGQTYTF-KVLEVDAAGARISLSLRRA--QRGQ 316

Query: 751 QLPSDASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           +L      +    ++ G +  +   G FV   +GR  G    S+  +   A +     VG
Sbjct: 317 KL----QQLEKGQILEGTISGLAPFGAFVDIGVGR-DGLVHISELSNTHVARVEDVVKVG 371

Query: 810 QSVRSNILDVNSETGRITLSLK 831
             V+  +LDV+ ++ RI+LSL+
Sbjct: 372 DRVQVRVLDVDPQSKRISLSLR 393



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 38/193 (19%)

Query: 1263 VGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE- 1319
            VG  +   ++G+   G+ V IG    G VH +EL             EG+ +      + 
Sbjct: 240  VGDNVEGTVTGMAPFGVFVDIGVGKDGLVHVSELA------------EGRVEKAEDVVQV 287

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ    KVLE+         + LSLR +  G                    +K++ L   
Sbjct: 288  GQTYTFKVLEVDAA---GARISLSLRRAQRG--------------------QKLQQLEKG 324

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             I++G +  +   G F+ +    D  V +S LS+ +V   E    +G  V  RVL V+P 
Sbjct: 325  QILEGTISGLAPFGAFVDIGVGRDGLVHISELSNTHVARVEDVVKVGDRVQVRVLDVDPQ 384

Query: 1440 SKRVEVTLKTSDS 1452
            SKR+ ++L+  D+
Sbjct: 385  SKRISLSLRLEDT 397



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 25/213 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+ PGM ++G+V ++  +G  V    G   L  +  MS+  I  P    K+G  +  RV 
Sbjct: 138 DLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVK 197

Query: 555 GVK--SKRITVT---------------HKKTLVK-SKLAILSSYAEATDRLITHGWITKI 596
            V+   +RI++T                KK  V   KLA L       D +   G +T +
Sbjct: 198 SVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAAL----RVGDNV--EGTVTGM 251

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
              G FV    G  G    SEL      +   +  VGQ    +++    A  RI+LS + 
Sbjct: 252 APFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGARISLS-LR 310

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
           +  R  +   ++ G ++ G +  + P    V +
Sbjct: 311 RAQRGQKLQQLEKGQILEGTISGLAPFGAFVDI 343


>gi|220931888|ref|YP_002508796.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
           orenii H 168]
 gi|219993198|gb|ACL69801.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
           orenii H 168]
          Length = 678

 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  +++ G VVKGKV  +  FGA V   GG++ L  +  MS   I  P +  + G E+  
Sbjct: 472 TLEELQEGQVVKGKVTKIVDFGAFVDL-GGIEGLLHISEMSWGRIEHPSEVLEEGQEIEV 530

Query: 552 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           +VL V  + +RI++  K+ L          + E     +  G ITKI   G F+   NG+
Sbjct: 531 KVLAVNKEEERISLGLKQLLPDPWEEFAKKHYEGE---VVSGTITKIVDFGAFMEIENGI 587

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +G    S+L       P  +  VG+ +K  I++  P  +R+ LS 
Sbjct: 588 EGLIHISQLSHRHVKTPDEVVSVGEEIKAEIINIDPEQKRVGLSI 632



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 42/261 (16%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +++ ++ + +N++LSAK  L    ++        +    VV G V  I++ G FV  LG 
Sbjct: 442 KVIEVERDKNNVVLSAKKVLEEEREKQKEKTLEELQEGQVVKGKVTKIVDFGAFVD-LGG 500

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+   G+    S+    GQ +   +L VN E  RI+L LKQ      +  F +
Sbjct: 501 IEGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLAVNKEEERISLGLKQLLPDPWE-EFAK 559

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
           +H+                           G V+ G + +  DFG  +  E  + + G I
Sbjct: 560 KHYE--------------------------GEVVSGTITKIVDFGAFMEIE--NGIEGLI 591

Query: 905 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
              QL+   V++       G  I+A I+++   ++ V LS+K   ++   E     +A K
Sbjct: 592 HISQLSHRHVKTPDEVVSVGEEIKAEIINIDPEQKRVGLSIKA--LEEQPETPKKVEAPK 649

Query: 958 KKRKREASKDLGVHQTVNAIV 978
           K+  RE     GV  T+  IV
Sbjct: 650 KEPTRENESTSGV--TIGEIV 668



 Score = 48.1 bits (113), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 153/349 (43%), Gaps = 27/349 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +D+K G  VKGKV+ +   G  V      + L PL  +S  +   P +  + G E+   V
Sbjct: 301 ADLKKGQQVKGKVVEIGDNGVYVDVGYKTEGLIPLRELSHRDFEDPHEIVEEGEEIDVIV 360

Query: 554 LGVKSKR--ITVTHKKT-LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           L ++ +   + ++ K+    K+   IL +Y    D +I    +T+  K G  V    G++
Sbjct: 361 LTLEDEEGNMVLSKKRADFEKAWERILKAY--ENDEII-EAEVTREVKGGLVVDI--GLR 415

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
           GF   S + +  G       +VG+ ++ +++      +++  S +  L    +  +    
Sbjct: 416 GFVHASHVAI--GYVEDLSDYVGKTLRLKVIEVERDKNNVVLSAKKVLEEEREKQKEKTL 473

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
           + ++ G +V G V  +      V +   G  +G +    ++   +EH +    V++ G E
Sbjct: 474 EELQEGQVVKGKVTKIVDFGAFVDL---GGIEGLLHISEMSWGRIEHPS---EVLEEGQE 527

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            + ++L ++ E   + L  K  L +  ++    A   +   VV G +  I++ G F+   
Sbjct: 528 IEVKVLAVNKEEERISLGLKQLLPDPWEEF---AKKHYEGEVVSGTITKIVDFGAFMEIE 584

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             + G    S+          +   VG+ +++ I++++ E  R+ LS+K
Sbjct: 585 NGIEGLIHISQLSHRHVKTPDEVVSVGEEIKAEIINIDPEQKRVGLSIK 633



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 88/194 (45%), Gaps = 36/194 (18%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD-PLS 1315
            + EG +V G+++KI+    G  V +G  + G +H +E+              G+ + P  
Sbjct: 476  LQEGQVVKGKVTKIVDF--GAFVDLG-GIEGLLHISEMSW------------GRIEHPSE 520

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
              +EGQ ++ KVL +++       + L L+  L       +           KH E    
Sbjct: 521  VLEEGQEIEVKVLAVNKEEE---RISLGLKQLLPDPWEEFAK----------KHYE---- 563

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
                 +V G +  +   G F+ +   ++  + +S LS  +V++P++   +G+ +   +++
Sbjct: 564  ---GEVVSGTITKIVDFGAFMEIENGIEGLIHISQLSHRHVKTPDEVVSVGEEIKAEIIN 620

Query: 1436 VEPLSKRVEVTLKT 1449
            ++P  KRV +++K 
Sbjct: 621  IDPEQKRVGLSIKA 634



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 38/217 (17%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
            GGLVV IG  L G VH + +    V D            LS Y  G+ ++ KV+E+ R  
Sbjct: 406  GGLVVDIG--LRGFVHASHVAIGYVED------------LSDY-VGKTLRLKVIEVERD- 449

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                +V LS +  L+                       +E+L    +V+G V  +   G 
Sbjct: 450  --KNNVVLSAKKVLEEEREKQKEKT-------------LEELQEGQVVKGKVTKIVDFGA 494

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ L   ++  + +S +S G +E P +    G+ +  +VL+V    +R+ + LK      
Sbjct: 495  FVDLG-GIEGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLAVNKEEERISLGLKQLLPDP 553

Query: 1455 ASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1490
              +      +  H  G++V G I ++  +G F+ IEN
Sbjct: 554  WEE-----FAKKHYEGEVVSGTITKIVDFGAFMEIEN 585


>gi|422630289|ref|ZP_16695488.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330939639|gb|EGH42945.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 456

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 84  LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 142

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 143 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 199

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 200 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 259

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 260 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 314

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 315 LSVDPERERISLGIK--------QLESDPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLA 366

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       G+ + + I+ V+ ++  I+LS+K
Sbjct: 367 DDIEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 415



 Score = 40.8 bits (94), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 262  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 321

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 322  ERISLGIKQLESDPFSEYVTVN----DKGAIVRGIVKEVDAKGAIITL 365


>gi|339638926|emb|CCC18127.1| ribosomal protein S1 [Lactobacillus pentosus IG1]
          Length = 429

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VV+GKV  + +FGA V   GG+  L  +  +S   + KP    KVG E+  ++L 
Sbjct: 201 LQAGDVVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYERVEKPADVLKVGQEVKVKILS 259

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V +  +R++++ K TL +    I     +     +  G + ++   G FV  + GV+G  
Sbjct: 260 VDADRERVSLSIKATLPEPWDGIEEKAPQGA---VLDGKVKRLTSFGAFVEVFPGVEGLV 316

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
             S++       P+ +  VGQ +K +++   P  +R+ LS      KP    +D+
Sbjct: 317 HISQISHQHIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIKALEEKPQTADDDN 371



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 151/366 (41%), Gaps = 58/366 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL      + +    VG V+   ++S I  S + N S+++   R+      
Sbjct: 50  GVEGVVPLKELSTQRVDDVNEAAKVGDVLDLVVISRI-GSDKENGSYLLSHRRLEARKVW 108

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIK 719
           DD+ K    G  +   V  V    +VV    +G+    IP   + DH +E     K    
Sbjct: 109 DDVEKEYEAGHTIKAPVTQVVKGGLVVDAGVRGF----IPASMIDDHYVEDLNAYK---- 160

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGC 777
            G E +  ++    S N L+ +  +++   ++   + +   +    VV G V  +   G 
Sbjct: 161 -GQELELKIIEIEPSENRLILSHRAVVEKQREAQREEALKTLQAGDVVEGKVARLTNFGA 219

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV  LG + G    S+    +    +    VGQ V+  IL V+++  R++LS+K +    
Sbjct: 220 FVD-LGGIDGLVHVSEISYERVEKPADVLKVGQEVKVKILSVDADRERVSLSIKATLPEP 278

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D         +EEK                      G+V++GKV     FG  V  E  
Sbjct: 279 WDG--------IEEKAPQ-------------------GAVLDGKVKRLTSFGAFV--EVF 309

Query: 898 SDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V G      I+H  +A     ++ G  I+  +LDV   E+ + LS+K +  ++ + A+
Sbjct: 310 PGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIKALE-EKPQTAD 368

Query: 951 SNRQAQ 956
            + ++Q
Sbjct: 369 DDNESQ 374



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 147/351 (41%), Gaps = 28/351 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +V  G VVKG+V+A+D     IV   G GV+ + PL  +S   +    +  KVG  L   
Sbjct: 22  EVNVGDVVKGEVLAIDDDKQVIVGIQGTGVEGVVPLKELSTQRVDDVNEAAKVGDVLDLV 81

Query: 553 VLG-----VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           V+       ++    ++H++   +     +    EA   +     +T++ K G  V    
Sbjct: 82  VISRIGSDKENGSYLLSHRRLEARKVWDDVEKEYEAGHTI--KAPVTQVVKGGLVVDA-- 137

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSED 664
           GV+GF P S +  D   E  + Y  GQ ++ +I+   P+  R+ LS    + K      +
Sbjct: 138 GVRGFIPASMID-DHYVEDLNAYK-GQELELKIIEIEPSENRLILSHRAVVEKQREAQRE 195

Query: 665 DLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
           + +K    G +V G V  +T     V +   G   G +    ++   E       V+K G
Sbjct: 196 EALKTLQAGDVVEGKVARLTNFGAFVDL---GGIDGLVHVSEIS--YERVEKPADVLKVG 250

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            E   ++L +D +   + LS K +L      +   A      +V+ G V  +   G FV 
Sbjct: 251 QEVKVKILSVDADRERVSLSIKATLPEPWDGIEEKAPQ---GAVLDGKVKRLTSFGAFVE 307

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+      A  +    VGQ ++  +LDV  +  R+ LS+K
Sbjct: 308 VFPGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIK 358



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 15/223 (6%)

Query: 362 NWKNDYNQHK--KVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-----VKVGDIYDQS 414
           ++  D N +K  ++  +I+ ++P+   + L+    +   R          ++ GD+  + 
Sbjct: 151 HYVEDLNAYKGQELELKIIEIEPSENRLILSHRAVVEKQREAQREEALKTLQAGDVV-EG 209

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
           KV R+    G  +D+          V +S+++ E V K     K G  V+V+IL      
Sbjct: 210 KVARL-TNFGAFVDLGGID----GLVHVSEISYERVEKPADVLKVGQEVKVKILSVDADR 264

Query: 475 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
              +  +KA+  E           G V+ GKV  + SFGA V+   GV+ L  +  +S  
Sbjct: 265 ERVSLSIKATLPEPWDGIEEKAPQGAVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQ 324

Query: 535 EIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLA 575
            I  P    KVG E+  +VL V+   KR+ ++ K    K + A
Sbjct: 325 HIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIKALEEKPQTA 367



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 45/212 (21%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  GD+V G++++ L+  G  V   G  + G VH +E+    V  P         D L  
Sbjct: 201  LQAGDVVEGKVAR-LTNFGAFVDLGG--IDGLVHVSEISYERVEKP--------ADVLKV 249

Query: 1317 YDEGQFVKCKVLEI-SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               GQ VK K+L + +   R +  ++ +L    DG                      IE+
Sbjct: 250  ---GQEVKVKILSVDADRERVSLSIKATLPEPWDG----------------------IEE 284

Query: 1376 LSPN-MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
             +P   ++ G VK +TS G F+ +   ++  V +S +S  ++ +P     +G+ +  +VL
Sbjct: 285  KAPQGAVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVL 344

Query: 1435 SVEPLSKRVEVTLK-------TSDSRTASQSE 1459
             V P  KR+ +++K       T+D    SQ E
Sbjct: 345  DVRPDEKRLALSIKALEEKPQTADDDNESQPE 376



 Score = 43.9 bits (102), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 22/187 (11%)

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
            P S  D+   + L+ Y +GQ ++ K++EI  +        LS R+ ++            
Sbjct: 144  PASMIDDHYVEDLNAY-KGQELELKIIEIEPSENRLI---LSHRAVVEKQREAQRE---- 195

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
                     E ++ L    +V+G V  +T+ G F+ L   +D  V +S +S   VE P  
Sbjct: 196  ---------EALKTLQAGDVVEGKVARLTNFGAFVDLG-GIDGLVHVSEISYERVEKPAD 245

Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1481
               +G+ V  ++LSV+   +RV +++K +        E         G ++ G++KR+ S
Sbjct: 246  VLKVGQEVKVKILSVDADRERVSLSIKATLPEPWDGIE----EKAPQGAVLDGKVKRLTS 301

Query: 1482 YGLFITI 1488
            +G F+ +
Sbjct: 302  FGAFVEV 308


>gi|392948947|ref|ZP_10314547.1| SSU ribosomal protein S1p [Lactobacillus pentosus KCA1]
 gi|334880465|emb|CCB81206.1| ribosomal protein S1 [Lactobacillus pentosus MP-10]
 gi|392435920|gb|EIW13844.1| SSU ribosomal protein S1p [Lactobacillus pentosus KCA1]
          Length = 428

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VV+GKV  + +FGA V   GG+  L  +  +S   + KP    KVG E+  ++L 
Sbjct: 201 LQAGDVVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYERVEKPADVLKVGQEVKVKILS 259

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V +  +R++++ K TL +    I     +     +  G + ++   G FV  + GV+G  
Sbjct: 260 VDADRERVSLSIKATLPEPWDGIEEKAPQGA---VLDGKVKRLTSFGAFVEVFPGVEGLV 316

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDD 665
             S++       P+ +  VGQ +K +++   P  +R+ LS      KP    +D+
Sbjct: 317 HISQISHQHIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIKALEEKPQTADDDN 371



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 151/366 (41%), Gaps = 58/366 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL      + +    VG V+   ++S I  S + N S+++   R+      
Sbjct: 50  GVEGVVPLKELSTQRVDDVNEAAKVGDVLDLVVISRI-GSDKENGSYLLSHRRLEARKVW 108

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIK 719
           DD+ K    G  +   V  V    +VV    +G+    IP   + DH +E     K    
Sbjct: 109 DDVEKEYEAGHTIKAPVTQVVKGGLVVDAGVRGF----IPASMIDDHYVEDLNAYK---- 160

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGC 777
            G E +  ++    S N L+ +  +++   ++   + +   +    VV G V  +   G 
Sbjct: 161 -GQELELKIIEIEPSENRLILSHRAVVEKQREAQREEALKTLQAGDVVEGKVARLTNFGA 219

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV  LG + G    S+    +    +    VGQ V+  IL V+++  R++LS+K +    
Sbjct: 220 FVD-LGGIDGLVHVSEISYERVEKPADVLKVGQEVKVKILSVDADRERVSLSIKATLPEP 278

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D         +EEK                      G+V++GKV     FG  V  E  
Sbjct: 279 WDG--------IEEKAPQ-------------------GAVLDGKVKRLTSFGAFV--EVF 309

Query: 898 SDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V G      I+H  +A     ++ G  I+  +LDV   E+ + LS+K +  ++ + A+
Sbjct: 310 PGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIKALE-EKPQTAD 368

Query: 951 SNRQAQ 956
            + ++Q
Sbjct: 369 DDNESQ 374



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 147/351 (41%), Gaps = 28/351 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +V  G VVKG+V+A+D     IV   G GV+ + PL  +S   +    +  KVG  L   
Sbjct: 22  EVNVGDVVKGEVLAIDDDKQVIVGIQGTGVEGVVPLKELSTQRVDDVNEAAKVGDVLDLV 81

Query: 553 VLG-----VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           V+       ++    ++H++   +     +    EA   +     +T++ K G  V    
Sbjct: 82  VISRIGSDKENGSYLLSHRRLEARKVWDDVEKEYEAGHTI--KAPVTQVVKGGLVVDA-- 137

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSED 664
           GV+GF P S +  D   E  + Y  GQ ++ +I+   P+  R+ LS    + K      +
Sbjct: 138 GVRGFIPASMID-DHYVEDLNAYK-GQELELKIIEIEPSENRLILSHRAVVEKQREAQRE 195

Query: 665 DLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
           + +K    G +V G V  +T     V +   G   G +    ++   E       V+K G
Sbjct: 196 EALKTLQAGDVVEGKVARLTNFGAFVDL---GGIDGLVHVSEIS--YERVEKPADVLKVG 250

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            E   ++L +D +   + LS K +L      +   A      +V+ G V  +   G FV 
Sbjct: 251 QEVKVKILSVDADRERVSLSIKATLPEPWDGIEEKAPQ---GAVLDGKVKRLTSFGAFVE 307

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+      A  +    VGQ ++  +LDV  +  R+ LS+K
Sbjct: 308 VFPGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIK 358



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 15/223 (6%)

Query: 362 NWKNDYNQHK--KVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-----VKVGDIYDQS 414
           ++  D N +K  ++  +I+ ++P+   + L+    +   R          ++ GD+  + 
Sbjct: 151 HYVEDLNAYKGQELELKIIEIEPSENRLILSHRAVVEKQREAQREEALKTLQAGDVV-EG 209

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
           KV R+    G  +D+          V +S+++ E V K     K G  V+V+IL      
Sbjct: 210 KVARL-TNFGAFVDLGGID----GLVHVSEISYERVEKPADVLKVGQEVKVKILSVDADR 264

Query: 475 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
              +  +KA+  E           G V+ GKV  + SFGA V+   GV+ L  +  +S  
Sbjct: 265 ERVSLSIKATLPEPWDGIEEKAPQGAVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQ 324

Query: 535 EIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLA 575
            I  P    KVG E+  +VL V+   KR+ ++ K    K + A
Sbjct: 325 HIATPNDVLKVGQEIKVKVLDVRPDEKRLALSIKALEEKPQTA 367



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 45/212 (21%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  GD+V G++++ L+  G  V   G  + G VH +E+    V  P         D L  
Sbjct: 201  LQAGDVVEGKVAR-LTNFGAFVDLGG--IDGLVHVSEISYERVEKP--------ADVLKV 249

Query: 1317 YDEGQFVKCKVLEI-SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               GQ VK K+L + +   R +  ++ +L    DG                      IE+
Sbjct: 250  ---GQEVKVKILSVDADRERVSLSIKATLPEPWDG----------------------IEE 284

Query: 1376 LSPN-MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
             +P   ++ G VK +TS G F+ +   ++  V +S +S  ++ +P     +G+ +  +VL
Sbjct: 285  KAPQGAVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVL 344

Query: 1435 SVEPLSKRVEVTLK-------TSDSRTASQSE 1459
             V P  KR+ +++K       T+D    SQ E
Sbjct: 345  DVRPDEKRLALSIKALEEKPQTADDDNESQPE 376



 Score = 43.9 bits (102), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 22/187 (11%)

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
            P S  D+   + L+ Y +GQ ++ K++EI  +        LS R+ ++            
Sbjct: 144  PASMIDDHYVEDLNAY-KGQELELKIIEIEPSENRLI---LSHRAVVEKQREAQRE---- 195

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
                     E ++ L    +V+G V  +T+ G F+ L   +D  V +S +S   VE P  
Sbjct: 196  ---------EALKTLQAGDVVEGKVARLTNFGAFVDLG-GIDGLVHVSEISYERVEKPAD 245

Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1481
               +G+ V  ++LSV+   +RV +++K +        E         G ++ G++KR+ S
Sbjct: 246  VLKVGQEVKVKILSVDADRERVSLSIKATLPEPWDGIE----EKAPQGAVLDGKVKRLTS 301

Query: 1482 YGLFITI 1488
            +G F+ +
Sbjct: 302  FGAFVEV 308


>gi|255320506|ref|ZP_05361687.1| ribosomal protein S1 [Acinetobacter radioresistens SK82]
 gi|262378398|ref|ZP_06071555.1| ribosomal protein S1 [Acinetobacter radioresistens SH164]
 gi|421463949|ref|ZP_15912642.1| ribosomal protein S1 [Acinetobacter radioresistens WC-A-157]
 gi|421856454|ref|ZP_16288820.1| 30S ribosomal protein S1 [Acinetobacter radioresistens DSM 6976 =
           NBRC 102413]
 gi|255302478|gb|EET81714.1| ribosomal protein S1 [Acinetobacter radioresistens SK82]
 gi|262299683|gb|EEY87595.1| ribosomal protein S1 [Acinetobacter radioresistens SH164]
 gi|400206323|gb|EJO37300.1| ribosomal protein S1 [Acinetobacter radioresistens WC-A-157]
 gi|403188152|dbj|GAB75021.1| 30S ribosomal protein S1 [Acinetobacter radioresistens DSM 6976 =
           NBRC 102413]
          Length = 557

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      +AI++ Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWMAIMNRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKN 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D    E         K G   
Sbjct: 361 HDKGEKVSGTIKSITDFGIFI-----GLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        QL SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QLNSDPFNDFLAANERGALVKGTVTAVDARGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E     H     G  V G + ++  FG  +  PGG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKNHD---KGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 ARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAK 522



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 80/410 (19%), Positives = 164/410 (40%), Gaps = 66/410 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                   L E   M   ++           +  GS+++ +V    D+G      E   V 
Sbjct: 262  -------LGEDPWMAIMNR-----------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E   N 
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKNH 361

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQ 1012
               +K           V  T+ +I +      + + LP     + + S   +N Q +   
Sbjct: 362  DKGEK-----------VSGTIKSITDF----GIFIGLPGGIDGLVHLSDISWNEQGEEAI 406

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 1072
            +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+  +T
Sbjct: 407  RRYKKGDTVEAVILSVDAEGN--RISLGIKQLNSDPFNDFLAANER-----GALVKGTVT 459

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 460  AVDARGATVKLADEVEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506


>gi|422616824|ref|ZP_16685529.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv.
           japonica str. M301072]
 gi|330897209|gb|EGH28628.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv.
           japonica str. M301072]
          Length = 467

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 95  LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 153

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 154 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 210

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 211 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 270

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 271 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 325

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 326 LSVDPERERISLGIK--------QLESDPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLA 377

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       G+ + + I+ V+ ++  I+LS+K
Sbjct: 378 DDIEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 426



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 273  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 332

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 333  ERISLGIKQLESDPFSEYVTVN----DKGAIVRGIVKEVDAKGAIITL 376


>gi|398964539|ref|ZP_10680357.1| ribosomal protein S1 [Pseudomonas sp. GM30]
 gi|398148257|gb|EJM36941.1| ribosomal protein S1 [Pseudomonas sp. GM30]
          Length = 561

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVSVNDKGAIVTGTVKEVDAKGAIIVLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+     +S    G IV G +K V++ G  I +
Sbjct: 429  ERISLGIKQLESDPFSEY----VSVNDKGAIVTGTVKEVDAKGAIIVL 472


>gi|269122678|ref|YP_003310855.1| RNA binding S1 domain-containing protein [Sebaldella termitidis ATCC
            33386]
 gi|268616556|gb|ACZ10924.1| RNA binding S1 domain protein [Sebaldella termitidis ATCC 33386]
          Length = 681

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 109/515 (21%), Positives = 214/515 (41%), Gaps = 89/515 (17%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            + L++D ++ NL LS +  L+   ++       +    V+ G +  I++ G  V  LG+ 
Sbjct: 136  KFLIIDKDTKNLTLS-RSDLVKKEEE--DFYQTVQKGDVLEGTIKEILDFGLIVD-LGKT 191

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            TGF   S+       DL   +     +++ I++++ E  +I +S+KQ      +      
Sbjct: 192  TGFIHISEVDWSSVKDLKHLFNANDKIKAKIIELDKENKKIKMSIKQMKEDPWNI----- 246

Query: 846  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
                                  ++  +  G V+E +V E   FG+VV   EH    GFI 
Sbjct: 247  ----------------------FIAKYKTGDVLEAEVSEVMPFGIVV---EHEHNRGFIH 281

Query: 906  HHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
              +++   +E        G  ++A I+++ +  R   LS+K +  + + +   N +    
Sbjct: 282  ISEISWHPIEELSKCYSLGQKLKARIIEIDEKGRNYKLSVKQLDENPWDKLVENYK---- 337

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNTQKFPQKQFL 1016
                       V  TV  ++E + +  +   LP  +  +G+  +S+  +       +QF 
Sbjct: 338  -----------VGDTVEGVIEKILDFAI---LPSVDDVLGFIHISEISWGAHTGVIEQFK 383

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             G +V A ++ L   +   +L       S    SS      K  Y  G +++ EI EI  
Sbjct: 384  LGDTVKAKIIELNKDAKIFKL-------SIKRLSSDPWETVKDKYQKGQILEREIKEILD 436

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
              L ++      G +HI+E++  + N   NL   F +G+ +  +I+ + N+   + S   
Sbjct: 437  FALLVEMEENVEGMVHISEISYRRVN---NLKEKFTVGEKIKFKIL-EFNEEKRRVS--- 489

Query: 1137 ELSIKPSMLTV-SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILD 1195
             LS+K  +  + + I  K        ++ Q V+G V  +        +   L+  +   D
Sbjct: 490  -LSMKAILDDIWANIHDKY-------TLNQEVSGKVINIQEYGIFAELEDGLEVFIHRND 541

Query: 1196 SAYEPSELQEFQRRFHIGKAVTGHVLSIN-KEKKL 1229
             ++E  E +E++    +G  V   +L I+ KEKK+
Sbjct: 542  FSWEKEEHKEYK----LGDIVNFRILKIDEKEKKI 572



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 96/478 (20%), Positives = 201/478 (42%), Gaps = 48/478 (10%)

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK----PGLLLQGV 283
           +TVQ+G VL   +K I D G I+  G    TGF+  + +  +S  D+K        ++  
Sbjct: 164 QTVQKGDVLEGTIKEILDFGLIVDLG--KTTGFIHISEVDWSSVKDLKHLFNANDKIKAK 221

Query: 284 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
           +  +D+  K + +S       K + +D   I I     G ++   V  ++  G+++    
Sbjct: 222 IIELDKENKKIKMS------IKQMKEDPWNIFIAKYKTGDVLEAEVSEVMPFGIVVEH-E 274

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY--LL 396
           +  G + I  + +  P       Y+  +K+ ARI+ +D   R   L++     NP+  L+
Sbjct: 275 HNRGFIHISEI-SWHPIEELSKCYSLGQKLKARIIEIDEKGRNYKLSVKQLDENPWDKLV 333

Query: 397 HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV--STPAYVTISDVAEEEVRKLE 454
            N       KVGD         V+  +  +LD    P       ++ IS+++      + 
Sbjct: 334 EN------YKVGDT--------VEGVIEKILDFAILPSVDDVLGFIHISEISWGAHTGVI 379

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           +++K G  V+ +I+       +    +K  + +         + G +++ ++  +  F  
Sbjct: 380 EQFKLGDTVKAKIIELNKDAKIFKLSIKRLSSDPWETVKDKYQKGQILEREIKEILDFAL 439

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 572
           +V+    V+ +  +  +S   +    +KF VG ++ F++L    + +R++++ K  L   
Sbjct: 440 LVEMEENVEGMVHISEISYRRVNNLKEKFTVGEKIKFKILEFNEEKRRVSLSMKAILDDI 499

Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
              I   Y    +     G +  I+++G F    +G++ F  R++   +   E    Y +
Sbjct: 500 WANIHDKYTLNQE---VSGKVINIQEYGIFAELEDGLEVFIHRNDFSWEK--EEHKEYKL 554

Query: 633 GQVVKCRIMSSIPASRRIN---LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 687
           G +V  RI+      ++I+         P +  E  + K+G+ V   V+    N  +V
Sbjct: 555 GDIVNFRILKIDEKEKKISGGIKQLTQSPWKEME-SMYKIGNKVKVSVENEIENGYIV 611



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 128/607 (21%), Positives = 248/607 (40%), Gaps = 117/607 (19%)

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
            +E   +G V+E K+  ++   ++VS         F+   +   A+ E+G +IQ  I++  
Sbjct: 51   IENLNVGEVVEVKIIRNDGENIIVS--------KFLLDKEKEFASYETGDIIQGEIIEKI 102

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRK------REASKDLGV------------ 970
            K    V L     F+  F  +N  R  + K +K       + +K+L +            
Sbjct: 103  KGGYKVKLGKNIGFLP-FSISNLRRDDEYKNKKFKFLIIDKDTKNLTLSRSDLVKKEEED 161

Query: 971  -HQTV---NAIVEIVKENYLVLSLPEYNHSIGYASVS--DYNTQKFPQKQFLNGQSVIAT 1024
             +QTV   + +   +KE      + +   + G+  +S  D+++ K  +  F     + A 
Sbjct: 162  FYQTVQKGDVLEGTIKEILDFGLIVDLGKTTGFIHISEVDWSSVKDLKHLFNANDKIKAK 221

Query: 1025 VMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFG 1084
            ++ L   +   ++ + +K + E   +        + Y  G +++AE++E+ P      FG
Sbjct: 222  IIELDKENK--KIKMSIKQMKEDPWNIFI-----AKYKTGDVLEAEVSEVMP------FG 268

Query: 1085 IGFH-----GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139
            I        G IHI+E++    + +E L   + +GQ + ARII    K    K  + +L 
Sbjct: 269  IVVEHEHNRGFIHISEIS---WHPIEELSKCYSLGQKLKARIIEIDEKGRNYKLSVKQLD 325

Query: 1140 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE 1199
              P    V            +  +G  V G + K+ +   L ++   L    FI  S   
Sbjct: 326  ENPWDKLVE-----------NYKVGDTVEGVIEKILDFAILPSVDDVLG---FIHISEIS 371

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--- 1256
                     +F +G  V   ++ +NK+ K+ +L ++            +S+D  +T    
Sbjct: 372  WGAHTGVIEQFKLGDTVKAKIIELNKDAKIFKLSIKR-----------LSSDPWETVKDK 420

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
              +G I+   I +IL     L+V++  ++ G VH +E+    V++    +  G+      
Sbjct: 421  YQKGQILEREIKEILDF--ALLVEMEENVEGMVHISEISYRRVNNLKEKFTVGEK----- 473

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
                  +K K+LE +   R    V LS+++ LD + + N  D  T               
Sbjct: 474  ------IKFKILEFNEEKR---RVSLSMKAILDDIWA-NIHDKYT--------------- 508

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
              N  V G V N+   G F  L   L+  +  ++ S  + +   KE+ +G +V  R+L +
Sbjct: 509  -LNQEVSGKVINIQEYGIFAELEDGLEVFIHRNDFS--WEKEEHKEYKLGDIVNFRILKI 565

Query: 1437 EPLSKRV 1443
            +   K++
Sbjct: 566  DEKEKKI 572



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 33/236 (13%)

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV-- 667
           +GF   SE+   P  E S  Y +GQ +K RI+      R   LS + +      D LV  
Sbjct: 277 RGFIHISEISWHPIEELSKCYSLGQKLKARIIEIDEKGRNYKLS-VKQLDENPWDKLVEN 335

Query: 668 -KLGSLVSGVVDVVTPNAVVVYV-----------IAKGYSKGTIPTEHLADHLEHATVMK 715
            K+G  V GV++ +   A++  V           I+ G   G I    L D     TV  
Sbjct: 336 YKVGDTVEGVIEKILDFAILPSVDDVLGFIHISEISWGAHTGVIEQFKLGD-----TVKA 390

Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
            +I+          L+ ++    LS K     S+    +         ++   +  I++ 
Sbjct: 391 KIIE----------LNKDAKIFKLSIKRL---SSDPWETVKDKYQKGQILEREIKEILDF 437

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              V     + G    S+    +  +L + + VG+ ++  IL+ N E  R++LS+K
Sbjct: 438 ALLVEMEENVEGMVHISEISYRRVNNLKEKFTVGEKIKFKILEFNEEKRRVSLSMK 493


>gi|402699907|ref|ZP_10847886.1| 30S ribosomal protein S1 [Pseudomonas fragi A22]
          Length = 564

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 144/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEGT-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVQENDKGAIVKGIVKEVDAKGAIITLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       G+ V + I+ V+ ++  I LS+K
Sbjct: 474 PDIEATLKASEISRDRIEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 429  ERISLGIKQLESDPFSEYVQEN----DKGAIVKGIVKEVDAKGAIITL 472



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 145/382 (37%), Gaps = 64/382 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
           LE++QEG  +   VK++ D+G  +  G     G L   ++A           N G  IDV
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 245

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P G  V+ R
Sbjct: 246 K--------VLKYDRERNRVSLGLKQLGEDP------------WVAIKARYPEGTRVTAR 285

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRIS 345

Query: 389 LTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L +     NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 346 LGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSD-------- 397

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           ++ ++V EE VR+  KK  E   V + +   R    L    L++  F   V  +     G
Sbjct: 398 ISWNEVGEEAVRRF-KKGDELDTVILSVDPERERISLGIKQLESDPFSEYVQEND---KG 453

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            +VKG V  VD+ GAI+     ++A      +S   I       K G E+  +++ V  K
Sbjct: 454 AIVKGIVKEVDAKGAIITLAPDIEATLKASEISRDRIEDARNVLKEGEEVEAKIISVDRK 513

Query: 558 SKRITVTHK-KTLVKSKLAILS 578
           S+ I ++ K K +   K AI S
Sbjct: 514 SRVIQLSIKSKDVEDEKEAIQS 535



 Score = 40.8 bits (94), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 45/81 (55%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++     IV+G VK V +KG  I L+  ++A +  S +S   +E        G+ V 
Sbjct: 445  EYVQENDKGAIVKGIVKEVDAKGAIITLAPDIEATLKASEISRDRIEDARNVLKEGEEVE 504

Query: 1431 GRVLSVEPLSKRVEVTLKTSD 1451
             +++SV+  S+ +++++K+ D
Sbjct: 505  AKIISVDRKSRVIQLSIKSKD 525


>gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
 gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
          Length = 392

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++PGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +V
Sbjct: 202 SKLQPGMRLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T       ++  Y       I  G +TK+   G FV   +GV+G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRTLVKKYPVGA---IVEGSVTKLVTFGAFVDLGDGVEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+       P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDRRRISLSM 360



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 146/369 (39%), Gaps = 58/369 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDVNPEEVVALGDTIEALVLQKEDKE 95

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +     RV E      G  V G V  V    +++ +  +G+    +P  
Sbjct: 96  GRLILSKKRAEYERAWNRVEEK--FNAGENVEGEVIEVVKGGLILDIGLRGF----LPA- 148

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
            L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+  S + P
Sbjct: 149 SLVD-LRRVKDLNAYMGTRIEA-RVIEMDRNRNNVVLSRRVVLEEARKAERSEILSKLQP 206

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDL 265

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 878
              RI+L LKQ+                              +E  W   V+ + +G+++
Sbjct: 266 NRERISLGLKQT------------------------------TEDPWRTLVKKYPVGAIV 295

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 931
           EG V +   FG  V   +   V G +   ++A   V++       G  +Q  ++++    
Sbjct: 296 EGSVTKLVTFGAFVDLGDG--VEGLVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDR 353

Query: 932 RLVDLSLKT 940
           R + LS+K 
Sbjct: 354 RRISLSMKA 362



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 51/332 (15%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
             D   G  VTG V K++++  LL I    K++  I   + E S  ++      +    T 
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIG--FKSEGVI--PSRELSIRKDVNPEEVVALGDTI 84

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1276
              L + KE K  RL+L       S K  +     + ++   + G+ V G + +++ G  G
Sbjct: 85   EALVLQKEDKEGRLIL-------SKKRAEYERAWNRVEEKFNAGENVEGEVIEVVKG--G 135

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            L++ IG  L G +            P S  D  +   L+ Y  G  ++ +V+E+ R    
Sbjct: 136  LILDIG--LRGFL------------PASLVDLRRVKDLNAY-MGTRIEARVIEMDRN--- 177

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
              +V LS R  L+       S++             +  L P M ++G V ++   G F+
Sbjct: 178  RNNVVLSRRVVLEEARKAERSEI-------------LSKLQPGMRLKGTVSSIVDFGAFV 224

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
             L   +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK    +T  
Sbjct: 225  DLG-GIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK----QTTE 279

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                  +    VG IV G + ++ ++G F+ +
Sbjct: 280  DPWRTLVKKYPVGAIVEGSVTKLVTFGAFVDL 311


>gi|372488593|ref|YP_005028158.1| 30S ribosomal protein S1 [Dechlorosoma suillum PS]
 gi|359355146|gb|AEV26317.1| ribosomal protein S1 [Dechlorosoma suillum PS]
          Length = 568

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 155/354 (43%), Gaps = 36/354 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G  VKG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +V
Sbjct: 194 STLQEGATVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLAVGDEVTAKV 252

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L   ++  R+++  K+      + I   Y   T RL   G +T +  +G FV    G++G
Sbjct: 253 LKFDTEKNRVSLGLKQLGEDPWVGISRRYPSGT-RLF--GKVTNLTDYGAFVEIEQGIEG 309

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    P+ +  +G  V+  I+      RRI+L     +  P      +  
Sbjct: 310 LVHVSEMDWTNKNVHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCLANPWEEFAQNH- 368

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 727
           K G  VSG +  +T   V  ++   G   G +   HL+D L  +T  +  I+   + D++
Sbjct: 369 KKGDKVSGQIKSITDFGV--FIGLPGNIDGLV---HLSD-LSWSTTGEEAIRNFKKGDEV 422

Query: 728 ----LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGC 777
               L +D +   + L  K        QL  D      A+H   N++V   V ++   G 
Sbjct: 423 QAVVLAIDTDKERISLGIK--------QLEGDPYTNYIATH-EKNTIVRAVVKSVDAKGA 473

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            ++  G + G+   S+    +  DLS+   VG  + + I++V+ ++  + LS+K
Sbjct: 474 VLQLEGDVEGYLRASEYSRDRVEDLSQLVKVGDELEAMIINVDRKSRNVNLSIK 527



 Score = 40.4 bits (93), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 1364 DTPGKHLEKI-EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1422
            +T G+  EK+   L     V+G VKN+T  G F+ L   +D  + +++L+   V  P + 
Sbjct: 183  ETMGEEREKLLSTLQEGATVKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEV 241

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
              +G  V  +VL  +    RV + LK    +      +        G  + G++  +  Y
Sbjct: 242  LAVGDEVTAKVLKFDTEKNRVSLGLK----QLGEDPWVGISRRYPSGTRLFGKVTNLTDY 297

Query: 1483 GLFITIE 1489
            G F+ IE
Sbjct: 298  GAFVEIE 304


>gi|209877006|ref|XP_002139945.1| S1 RNA binding domain-containing protein [Cryptosporidium muris RN66]
 gi|209555551|gb|EEA05596.1| S1 RNA binding domain-containing protein [Cryptosporidium muris RN66]
          Length = 1948

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 133/272 (48%), Gaps = 49/272 (18%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG--YDEGQFDPLS 1315
             EG+ V  ++  +L G  GL+V+     YGR+H TEL +I ++DP+S   Y  G+   L+
Sbjct: 1226 EEGNNVLCKVVGVLQGYEGLIVKFDEKNYGRIHCTELDDIWINDPISEDRYKVGK--KLT 1283

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK-IE 1374
                G+  K K + IS T    + V+L   +S       N S +  +++T      K I 
Sbjct: 1284 VKVLGKLSKNKRVLISHTGSKKY-VQLIWDAS-------NRSSIIKNIETSSTSRPKSIN 1335

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV--ESPEKEFPIGKLVAGR 1432
            D+    ++ GY+K    +G F+ + R L  ++ L  LS+     E   + FPIGKL+   
Sbjct: 1336 DIKLGSLINGYIKYSGKQGVFVHIGRNLIGRIKLRELSNKTTTEEEARELFPIGKLL-NP 1394

Query: 1433 VLSVEPLSK-RVEVTLK--TSD------SRTASQSEINNLS------------------- 1464
            +L +  L + +++++L    SD      S+    SE+++L+                   
Sbjct: 1395 ILVIGGLEENKIDLSLSRLQSDNVILKISQQKDYSELDDLNSHGNGEEQLSNYETNLLGK 1454

Query: 1465 ----NLHVGDIVIGQIKRVES-YGLFITIENT 1491
                +L++G I+ G+IK V + +G+F+T+++T
Sbjct: 1455 LRFEDLYIGRILAGKIKHVSTKFGIFVTLKDT 1486



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
           + K+P   N I    +  G  L+ ++ EV +K+L + LPGG  GLA   + L+    NE 
Sbjct: 41  TSKIPNIRN-IHRDELVTGTLLFCIIDEVYDKELKLSLPGGHFGLATINNTLEDEASNEK 99

Query: 176 EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 235
             N   LL   F  G +V   ++     + E+  R   ++  L+   K L L    +G V
Sbjct: 100 LRNL--LLDERFKAGDIVIAAIICSSKGRVEVTIRPSIVNAGLTFSSKALGL----KGYV 153

Query: 236 LTAYVKSIEDHGYILHFGLP 255
           ++A + SIED+GY L   +P
Sbjct: 154 ISATIISIEDYGYTLDVSIP 173


>gi|398973366|ref|ZP_10684325.1| ribosomal protein S1 [Pseudomonas sp. GM25]
 gi|398143082|gb|EJM31964.1| ribosomal protein S1 [Pseudomonas sp. GM25]
          Length = 561

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVSVNDKGAIVTGTVKEVDAKGAIIVLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQQVEAKIISVDRKSRVIQLSIK 522



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+     +S    G IV G +K V++ G  I +
Sbjct: 429  ERISLGIKQLESDPFSEY----VSVNDKGAIVTGTVKEVDAKGAIIVL 472


>gi|384108832|ref|ZP_10009721.1| ribosomal protein S1 [Treponema sp. JC4]
 gi|383869662|gb|EID85272.1| ribosomal protein S1 [Treponema sp. JC4]
          Length = 568

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 140/353 (39%), Gaps = 33/353 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV-- 553
           V  G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V  
Sbjct: 199 VNIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVARPKDFVKKGQEIELKVIR 257

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           L    KRI ++ K       +     Y    D  I  G +TK+ + G FV    G++G  
Sbjct: 258 LDPAEKRINLSLKHFAEDPWIHFEEKY-HVND--IVKGKVTKLTEFGAFVELEEGIEGLV 314

Query: 614 PRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
             SE        +P  M  VGQ V+  I+     + R++L F     + +E+   K+G  
Sbjct: 315 HISEFSWTKKINKPGDMVTVGQEVEAMILGYDIQAGRVSLGF----KQATENPWDKIGEK 370

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYEFD---- 725
                 V   N  VV + A G     I  +   D   HA   +  K V  PG E      
Sbjct: 371 FPVGTKV---NGKVVKLTAAG---AFISIDEGIDAFLHADDISWTKKVKHPGSELTVGQD 424

Query: 726 ---QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
               ++  D E+  + +  K    N  +     A      S + G + +I + G FV+  
Sbjct: 425 VEAVVIECDPEAHRIKVGLKQVTDNPWKAF---ADEYQVGSTLEGEITSITDFGVFVKAP 481

Query: 783 GRLTGFAPRSKAVDGQRADLSKT---YYVGQSVRSNILDVNSETGRITLSLKQ 832
             + G   ++   D +     +    Y VG  +   ++DVN++  ++  S+++
Sbjct: 482 NGIEGLVNKANLSDDKDVPFEEAVAKYKVGDKINVFVVDVNTDKEKVAFSVRE 534



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 119/275 (43%), Gaps = 19/275 (6%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           I+D++   V + +   K+G  + ++++     E      LK  A +  +          +
Sbjct: 230 INDMSWGHVARPKDFVKKGQEIELKVIRLDPAEKRINLSLKHFAEDPWIHFEEKYHVNDI 289

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAELVFRVLG-- 555
           VKGKV  +  FGA V+   G++ L    H+SEF    +I KPG    VG E+   +LG  
Sbjct: 290 VKGKVTKLTEFGAFVELEEGIEGLV---HISEFSWTKKINKPGDMVTVGQEVEAMILGYD 346

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +++ R+++  K+        I   +   T     +G + K+   G F+    G+  F   
Sbjct: 347 IQAGRVSLGFKQATENPWDKIGEKFPVGTK---VNGKVVKLTAAGAFISIDEGIDAFLHA 403

Query: 616 SELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGS 671
            ++      + P S   VGQ V+  ++   P + RI +        P +   D+  ++GS
Sbjct: 404 DDISWTKKVKHPGSELTVGQDVEAVVIECDPEAHRIKVGLKQVTDNPWKAFADEY-QVGS 462

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            + G +  +T     V+V A    +G +   +L+D
Sbjct: 463 TLEGEITSITDFG--VFVKAPNGIEGLVNKANLSD 495



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P  K
Sbjct: 205  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVARPKDFVKKGQEIELKVIRLDPAEK 263

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK      A    I+     HV DIV G++ ++  +G F+ +E
Sbjct: 264  RINLSLK----HFAEDPWIHFEEKYHVNDIVKGKVTKLTEFGAFVELE 307



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 111/527 (21%), Positives = 184/527 (34%), Gaps = 106/527 (20%)

Query: 665  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
            D  + G LV G V  VT +   VYV     S+G IP E  AD L          K G   
Sbjct: 30   DAPQAGQLVEGTVIQVTSD--YVYVDVGDKSEGLIPAEEFADDLP---------KIGDTV 78

Query: 725  DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              LL+  N +  +L   K    +S + L          + V G +  ++++G  V     
Sbjct: 79   QALLIGHNNNGPVLSKKK---ADSKRYLKDIQQAWKDKTPVDGTISKVVKSGYEVNLGID 135

Query: 785  LTGFAPRSKA------------------------------------------VDGQRADL 802
               F P S+A                                          +D +R   
Sbjct: 136  RAAFLPISQADAEKVEKPESLLGLKSKFYIERLYTDNKLNPVVNRRKYLEEQIDEKRDAF 195

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS---------FMQEHFLLEEKI 853
              +  +G +V+  +    S    I L          D S         F+++   +E K+
Sbjct: 196  FNSVNIGDTVKGTVKSFTSFGAFIDLGGFDGLLHINDMSWGHVARPKDFVKKGQEIELKV 255

Query: 854  AMLQ--------SSKHNGSELKWV---EGFIIGSVIEGKVHESNDFGVVVSFEE------ 896
              L         S KH  +E  W+   E + +  +++GKV +  +FG  V  EE      
Sbjct: 256  IRLDPAEKRINLSLKHF-AEDPWIHFEEKYHVNDIVKGKVTKLTEFGAFVELEEGIEGLV 314

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
            H   + +       G  V  G  ++A IL        V L         F++A  N   +
Sbjct: 315  HISEFSWTKKINKPGDMVTVGQEVEAMILGYDIQAGRVSLG--------FKQATENPWDK 366

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS-VSDYNTQKFPQKQF 1015
              ++         V   VN  V  +      +S+ E   +  +A  +S     K P  + 
Sbjct: 367  IGEK-------FPVGTKVNGKVVKLTAAGAFISIDEGIDAFLHADDISWTKKVKHPGSEL 419

Query: 1016 LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 1075
              GQ V A V  +     A R+ + LK +++    +         Y VGS ++ EIT I 
Sbjct: 420  TVGQDVEAVV--IECDPEAHRIKVGLKQVTDNPWKAFA-----DEYQVGSTLEGEITSIT 472

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
               + +K   G  G ++   ++DDK    E   + +K+G  +   ++
Sbjct: 473  DFGVFVKAPNGIEGLVNKANLSDDKDVPFEEAVAKYKVGDKINVFVV 519



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 9/112 (8%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G V  +T+ G FI +   +DA +   ++S    V+ P  E  +G+ V   V+  +P +
Sbjct: 377  VNGKVVKLTAAGAFISIDEGIDAFLHADDISWTKKVKHPGSELTVGQDVEAVVIECDPEA 436

Query: 1441 KRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             R++V LK  T +   A   E        VG  + G+I  +  +G+F+   N
Sbjct: 437  HRIKVGLKQVTDNPWKAFADE------YQVGSTLEGEITSITDFGVFVKAPN 482


>gi|406915508|gb|EKD54583.1| hypothetical protein ACD_60C00067G0001 [uncultured bacterium]
          Length = 573

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 138/353 (39%), Gaps = 29/353 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  VKG V  +  +GA +   GG+  L  +  MS   I  P +   +G E+  ++L    
Sbjct: 192 GDEVKGSVKNLTDYGAFIDL-GGIDGLLHITDMSWKRIKHPNEILAIGDEIKVKILKFDR 250

Query: 559 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
               V+   K L +     +SS      RL   G +T I  +GCFV    G++G    SE
Sbjct: 251 DNARVSLGLKQLGEDPWTDISSRYPIGKRL--QGKVTNITDYGCFVEIEAGIEGLVHVSE 308

Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KLGSLVS 674
           +   +    P+ + H+GQ V+  ++      RRI+L          E+     + G  +S
Sbjct: 309 MDWTNKNVNPNKVVHLGQEVEVIVLDIDGERRRISLGLKQCTVNPWEEFATHHQKGDKIS 368

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL----LVL 730
           G +  +T   + +     G   G     HL+D   +    +  I+   + D+L    L +
Sbjct: 369 GKIKSITDFGIFI-----GLDGGIDGLIHLSDISWNEGSAEEAIRKFQKGDELETIILTI 423

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPN-----SVVHGYVCNIIETGCFVRFLGRL 785
           D E   + L  K        QL  D    + N     S V G V  +      V     +
Sbjct: 424 DAERERISLGLK--------QLAEDPMTNYLNQHEKGSAVSGKVVEVDAKSIVVELADNV 475

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G    +  +  +  D    Y VG ++ + I   + +T  ITLS+K S    T
Sbjct: 476 QGTLRATDLLQEKVEDARTHYSVGDTIEAKITGTDRKTHMITLSMKASKDKET 528



 Score = 45.1 bits (105), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 150/365 (41%), Gaps = 39/365 (10%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           PG V+ G VI V++   ++    G+K+   +P + +F   +   +  VG E+   +  V+
Sbjct: 20  PGTVILGTVIRVNADHVVI--SAGLKSESIIP-IEQFCDERGNVEVSVGDEVRVALETVE 76

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
               T    +   K   A +        + I  G I    K G F    N ++ F P S 
Sbjct: 77  DGFGTTRLSRERAKRLEAWIDLEKAYEKKEIVRGVIQGRVK-GGFTVEVNKIRAFLPGSL 135

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKL-- 669
           + + P  +P ++   G+    R++      ++I  SRR   S M     V  + L++   
Sbjct: 136 VDVKPIRDPEALE--GKEFDFRVIKIDAKRNNIVVSRR---SAMESENNVEREALLEKLH 190

Query: 670 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEF 724
            G  V G V  +T     + +   G   G +   H+ D     ++H      ++  G E 
Sbjct: 191 EGDEVKGSVKNLTDYGAFIDL---GGIDGLL---HITDMSWKRIKHPN---EILAIGDEI 241

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFL 782
             ++L  D +++ + L  K       +   +D S  +P    + G V NI + GCFV   
Sbjct: 242 KVKILKFDRDNARVSLGLK----QLGEDPWTDISSRYPIGKRLQGKVTNITDYGCFVEIE 297

Query: 783 GRLTGFAPRSKA-VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             + G    S+     +  + +K  ++GQ V   +LD++ E  RI+L LKQ C  +    
Sbjct: 298 AGIEGLVHVSEMDWTNKNVNPNKVVHLGQEVEVIVLDIDGERRRISLGLKQ-CTVNPWEE 356

Query: 842 FMQEH 846
           F   H
Sbjct: 357 FATHH 361


>gi|424924245|ref|ZP_18347606.1| ribosomal protein S1 [Pseudomonas fluorescens R124]
 gi|404305405|gb|EJZ59367.1| ribosomal protein S1 [Pseudomonas fluorescens R124]
          Length = 562

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 191 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 250 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 306

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 307 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 366

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 367 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 421

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 422 LSVDPERERISLGIK--------QLESDPFSEYVSVNDKGAIVTGTVKEVDAKGAIIVLA 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       GQ V + I+ V+ ++  I LS+K
Sbjct: 474 DDIEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522



 Score = 40.8 bits (94), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 369  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 428

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+     +S    G IV G +K V++ G  I +
Sbjct: 429  ERISLGIKQLESDPFSEY----VSVNDKGAIVTGTVKEVDAKGAIIVL 472


>gi|422641147|ref|ZP_16704571.1| 30S ribosomal protein S1, partial [Pseudomonas syringae Cit 7]
 gi|330953535|gb|EGH53795.1| 30S ribosomal protein S1 [Pseudomonas syringae Cit 7]
          Length = 494

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 122 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 180

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E+T R+     +T +  +GCF     GV+G  
Sbjct: 181 YDRERNRVSLGLKQLGEDPWVAIKARYPEST-RVTAR--VTNLTDYGCFAELEEGVEGLV 237

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      +   ED       G
Sbjct: 238 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKG 297

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 298 DKISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVI 352

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  + ++  N   ++V G V  +   G  +   
Sbjct: 353 LSVDPERERISLGIK--------QLESDPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLA 404

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       G+ + + I+ V+ ++  I+LS+K
Sbjct: 405 DDIEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 453



 Score = 40.8 bits (94), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            + G +K++T  G FI L   +D  V LS++S   V E   + F  G  +   +LSV+P  
Sbjct: 300  ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPER 359

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +S   S+    N      G IV G +K V++ G  IT+
Sbjct: 360  ERISLGIKQLESDPFSEYVTVN----DKGAIVRGIVKEVDAKGAIITL 403


>gi|308270373|emb|CBX26985.1| 30S ribosomal protein S1 [uncultured Desulfobacterium sp.]
          Length = 611

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 158/358 (44%), Gaps = 38/358 (10%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T S +  G V +G V  +  +G  V   GGV  L  +  +S   I  P + F VG ++  
Sbjct: 236 TLSSITEGKVSEGFVKNITEYGVFVDL-GGVDGLLHITDISWGRIKHPAEMFAVGDKIQV 294

Query: 552 RVLGV--KSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFY 606
           ++L +  + +R+++  K+ +    ++    Y   A  T ++++      +  +G FV   
Sbjct: 295 KILSIDKEKERVSLGMKQLVEDPWISASEKYPIGARVTGKVVS------LTDYGAFVELE 348

Query: 607 NGVQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVS 662
            G++G    SE+        PS ++ VG++V+  ++   P +RRI+L        P  + 
Sbjct: 349 EGIEGLIHVSEMSWARKIRHPSKIFSVGEMVESVVLDIKPENRRISLGVKQVVPNPWDII 408

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSV 717
            ++   +G+ + G V  +T   + V     G  +G     H++D      ++H +    +
Sbjct: 409 SENY-PVGTTIEGKVKNITDFGIFV-----GIDEGIDGLIHISDISWTKRIKHPS---EL 459

Query: 718 IKPGYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSD--ASHIHPNSVVHGYVCNIIE 774
            K G +  Q +VL  E  N     ++SL I   Q+ P +  ++       + G + N+ +
Sbjct: 460 YKKG-DVIQAVVLAIEKEN----ERFSLGIKQLQKDPWETVSTRYAVGKEIVGTITNVTD 514

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            G FV     + G    S+    +       Y VG  + + ++++NS   RI LS+K+
Sbjct: 515 FGIFVELEEGIEGLVHVSEISKEKIKTPVGKYNVGDGITAKVMNINSAERRIGLSIKR 572



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 193/493 (39%), Gaps = 87/493 (17%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG----AELVFR 552
           + G VV GKVI++D    +V    G K+   +  + EF+      K  V      E++  
Sbjct: 69  QEGEVVSGKVISIDKDYVLVDI--GYKSEGQI-KIHEFKDENGNGKINVTPGDTVEVMVE 125

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-ITHGWITKIEKHGCFVRFYNGVQG 611
               + +R+ ++ +K     K+ +     +A D    T G I    K G  V    GVQ 
Sbjct: 126 WWDDEEERVILSKEKA---EKVKVWDDIKKAHDSDGTTEGVILSRVKGGFSVDI--GVQA 180

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDD 665
           F P S+  L P      +  VG+    +I+      S++  SRR  L       R +   
Sbjct: 181 FLPGSQADLRPIRNLDEL--VGKTFAFKILKYNRKRSNVVLSRRAILEQDRDSKRTATLS 238

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPG 721
            +  G +  G V  +T   V V +   G   G +   H+ D     ++H   M +V   G
Sbjct: 239 SITEGKVSEGFVKNITEYGVFVDL---GGVDGLL---HITDISWGRIKHPAEMFAV---G 289

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHP-NSVVHGYVCNIIET 775
            +   ++L +D E   + L  K        QL  D    AS  +P  + V G V ++ + 
Sbjct: 290 DKIQVKILSIDKEKERVSLGMK--------QLVEDPWISASEKYPIGARVTGKVVSLTDY 341

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           G FV     + G    S+    ++    SK + VG+ V S +LD+  E  RI+L +KQ  
Sbjct: 342 GAFVELEEGIEGLIHVSEMSWARKIRHPSKIFSVGEMVESVVLDIKPENRRISLGVKQVV 401

Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            +  D                              E + +G+ IEGKV    DFG+ V  
Sbjct: 402 PNPWDII---------------------------SENYPVGTTIEGKVKNITDFGIFVGI 434

Query: 895 EEHSDVYGFITHHQLAGAT--------VESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
           +E  D  G I    ++            + G VIQA +L + K      L +K +  D +
Sbjct: 435 DEGID--GLIHISDISWTKRIKHPSELYKKGDVIQAVVLAIEKENERFSLGIKQLQKDPW 492

Query: 947 REANSNRQAQKKK 959
            E  S R A  K+
Sbjct: 493 -ETVSTRYAVGKE 504



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 136/307 (44%), Gaps = 49/307 (15%)

Query: 1208 RRFHIGKAVTGHVLSINKEKKLL--------RLVLRPFQDGISDKTVDIS-NDNMQTFIH 1258
            +RF  G+ V+G V+SI+K+  L+        ++ +  F+D   +  ++++  D ++  + 
Sbjct: 66   KRFQEGEVVSGKVISIDKDYVLVDIGYKSEGQIKIHEFKDENGNGKINVTPGDTVEVMVE 125

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE--LKNICVSDPLSGYD--------- 1307
              D    R+  ILS      V++   +  + H ++   + + +S    G+          
Sbjct: 126  WWDDEEERV--ILSKEKAEKVKVWDDIK-KAHDSDGTTEGVILSRVKGGFSVDIGVQAFL 182

Query: 1308 ---EGQFDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1362
               +    P+   DE  G+    K+L+ +R      +V LS R+ L+             
Sbjct: 183  PGSQADLRPIRNLDELVGKTFAFKILKYNRK---RSNVVLSRRAILEQ------------ 227

Query: 1363 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1422
             D   K    +  ++   + +G+VKN+T  G F+ L   +D  + ++++S G ++ P + 
Sbjct: 228  -DRDSKRTATLSSITEGKVSEGFVKNITEYGVFVDLG-GVDGLLHITDISWGRIKHPAEM 285

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
            F +G  +  ++LS++   +RV + +K    +      I+      +G  V G++  +  Y
Sbjct: 286  FAVGDKIQVKILSIDKEKERVSLGMK----QLVEDPWISASEKYPIGARVTGKVVSLTDY 341

Query: 1483 GLFITIE 1489
            G F+ +E
Sbjct: 342  GAFVELE 348



 Score = 43.9 bits (102), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 86/449 (19%), Positives = 184/449 (40%), Gaps = 71/449 (15%)

Query: 1037 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            ++L  +AI E +   SKR    SS   G + +  +  I    + +  G G  G +HIT++
Sbjct: 217  VVLSRRAILEQD-RDSKRTATLSSITEGKVSEGFVKNITEYGVFVDLG-GVDGLLHITDI 274

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLF 1156
            +  +   +++    F +G  +  +I                LSI      VS +G K L 
Sbjct: 275  SWGR---IKHPAEMFAVGDKIQVKI----------------LSIDKEKERVS-LGMKQLV 314

Query: 1157 EECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
            E+  +S      IG RVTG V  + +  A + +   ++  + + + ++   +++   + F
Sbjct: 315  EDPWISASEKYPIGARVTGKVVSLTDYGAFVELEEGIEGLIHVSEMSW-ARKIRHPSKIF 373

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
             +G+ V   VL I  E + + L ++     +     DI ++N       G  + G++  I
Sbjct: 374  SVGEMVESVVLDIKPENRRISLGVKQ----VVPNPWDIISENYPV----GTTIEGKVKNI 425

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
                 G+ V I   + G +H +++           + +    P   Y +G  ++  VL I
Sbjct: 426  TDF--GIFVGIDEGIDGLIHISDI----------SWTKRIKHPSELYKKGDVIQAVVLAI 473

Query: 1331 SR-TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
             +   R +  ++   +   + +S+  +          GK             + G + NV
Sbjct: 474  EKENERFSLGIKQLQKDPWETVSTRYAV---------GKE------------IVGTITNV 512

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            T  G F+ L   ++  V +S +S   +++P  ++ +G  +  +V+++    +R+ +++K 
Sbjct: 513  TDFGIFVELEEGIEGLVHVSEISKEKIKTPVGKYNVGDGITAKVMNINSAERRIGLSIKR 572

Query: 1450 SDSRTASQSEINNLSNLHVGDIVIGQIKR 1478
                       + ++N+       G+I R
Sbjct: 573  LQMENDQNLLTDYINNMKPATSAFGEILR 601



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G V ++T  G F+ L   ++  + +S +S    +  P K F +G++V   VL ++P +
Sbjct: 331  VTGKVVSLTDYGAFVELEEGIEGLIHVSEMSWARKIRHPSKIFSVGEMVESVVLDIKPEN 390

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ + +K       +  +I +  N  VG  + G++K +  +G+F+ I+
Sbjct: 391  RRISLGVKQV---VPNPWDIIS-ENYPVGTTIEGKVKNITDFGIFVGID 435



 Score = 40.4 bits (93), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 126/294 (42%), Gaps = 57/294 (19%)

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1259
            P+E+      F +G  +   +LSI+KEK+ + L ++     + D  +  S         E
Sbjct: 282  PAEM------FAVGDKIQVKILSIDKEKERVSLGMKQL---VEDPWISAS---------E 323

Query: 1260 GDIVGGRIS-KILSGVG-GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
               +G R++ K++S    G  V++   + G +H +E+           +      P   +
Sbjct: 324  KYPIGARVTGKVVSLTDYGAFVELEEGIEGLIHVSEM----------SWARKIRHPSKIF 373

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
              G+ V+  VL+I    R    + L ++  +      N  D+ +            E+  
Sbjct: 374  SVGEMVESVVLDIKPENR---RISLGVKQVV-----PNPWDIIS------------ENYP 413

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSV 1436
                ++G VKN+T  G F+ +   +D  + +S++S    ++ P + +  G ++   VL++
Sbjct: 414  VGTTIEGKVKNITDFGIFVGIDEGIDGLIHISDISWTKRIKHPSELYKKGDVIQAVVLAI 473

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1489
            E  ++R  + +K        +     +S  + VG  ++G I  V  +G+F+ +E
Sbjct: 474  EKENERFSLGIK-----QLQKDPWETVSTRYAVGKEIVGTITNVTDFGIFVELE 522


>gi|196231335|ref|ZP_03130194.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
 gi|196224671|gb|EDY19182.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
          Length = 566

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 44/364 (12%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G  VKG V  +  FGA +   G +  L  +  M+   +  P +  KVG EL   VL 
Sbjct: 186 IKVGSTVKGVVKNLTDFGAFIDLDG-MDGLLHITDMTWGRLGHPSELVKVGQELDVIVLD 244

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 609
           +  + +R+++  K+T         + + E  +R        G IT +  +G FV    GV
Sbjct: 245 INKEKERVSLGLKQTQ-------KNPWEETENRFPVGSKVKGKITNLVPYGAFVEIEEGV 297

Query: 610 QGFAPRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDL 666
           +G    SEL        PS +  VGQ V+  ++      ++I+L    ++P    E +  
Sbjct: 298 EGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEPNPWDEIEHR 357

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 721
            ++G  V G V  +T     V +      +G     H++D      + H +    V+K G
Sbjct: 358 YQIGRQVKGTVRNLTAYGAFVEL-----EEGIDGMIHVSDMSWTKKVNHPS---EVLKKG 409

Query: 722 YEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-----SVVHGYVCNIIET 775
            E + +++ +D ++  + L  K        QL  D      N      +V G V  I   
Sbjct: 410 DEIEAVVIDIDKQNQRISLGIK--------QLEGDPWKEIENKYKIGDLVKGKVSKITTF 461

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G F+   G + G    S+  + +   +     VGQ V + ++ V+    RI LSLK +  
Sbjct: 462 GAFISLEGDIDGLIHISQISEDRVDKIKDHLKVGQEVEARVIKVDKTERRIGLSLKAANY 521

Query: 836 SSTD 839
           S  D
Sbjct: 522 SEED 525



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 191/477 (40%), Gaps = 77/477 (16%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + K G +VKG++I V     +V    G K+   +  +SEF+        ++G E+   +L
Sbjct: 18  EFKEGQIVKGRIIEVRPREVLVDI--GYKSEGAVS-LSEFD---DADDIQIGDEVEVLIL 71

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEAT-----DRLITHGWITKIEKHGCFVRFYNGV 609
            ++++  +V     L K K A   ++ +       D LI  G +  + K G  V    GV
Sbjct: 72  RLENEEGSVI----LSKEKAAYRQNWEKIVKVFQGDGLI-KGKVKAVVKGGLTVNI--GV 124

Query: 610 QGFAPRSELGLDPGCEPSSMYH-VGQVVKCRIMS------SIPASRRINLSFMMKPTRVS 662
           + F P S++ + P   P  +   VG     +I+       ++  SRR  +       R  
Sbjct: 125 EAFLPGSQIDIVP---PKDLQQFVGNTYDFKIVKINDDRKNVVLSRRELIEAERAEKRQR 181

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
             D +K+GS V GVV  +T      ++   G       T+     L H +    ++K G 
Sbjct: 182 FMDTIKVGSTVKGVVKNLTDFG--AFIDLDGMDGLLHITDMTWGRLGHPS---ELVKVGQ 236

Query: 723 EFDQLLVLD--NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
           E D ++VLD   E   + L  K +  N  ++     +     S V G + N++  G FV 
Sbjct: 237 ELD-VIVLDINKEKERVSLGLKQTQKNPWEET---ENRFPVGSKVKGKITNLVPYGAFVE 292

Query: 781 FLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
               + G    S+    +R    S    VGQ V + +L VN E  +I+L ++Q   +  D
Sbjct: 293 IEEGVEGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEPNPWD 352

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                EH                         + IG  ++G V     +G  V  EE  D
Sbjct: 353 EI---EHR------------------------YQIGRQVKGTVRNLTAYGAFVELEEGID 385

Query: 900 VYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
             G I    ++           ++ G  I+A ++D+ K  + + L +K +  D ++E
Sbjct: 386 --GMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVIDIDKQNQRISLGIKQLEGDPWKE 440



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 150/376 (39%), Gaps = 79/376 (21%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAV 1216
            + +G  V G V  + +  A + +   +   L I D  +     PSEL        +G+ +
Sbjct: 186  IKVGSTVKGVVKNLTDFGAFIDLD-GMDGLLHITDMTWGRLGHPSEL------VKVGQEL 238

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               VL INKEK+ + L L+  Q    ++T        +     G  V G+I+ ++    G
Sbjct: 239  DVIVLDINKEKERVSLGLKQTQKNPWEET--------ENRFPVGSKVKGKITNLVPY--G 288

Query: 1277 LVVQIGPHLYGRVHFTEL---KNICV-SDPLSGYDEGQFDPLSGYDEGQFVKCKV----- 1327
              V+I   + G +H +EL   K I   SD L+   E +   L    E Q +   V     
Sbjct: 289  AFVEIEEGVEGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEP 348

Query: 1328 ---------LEISRTVRGT------FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1372
                      +I R V+GT      +   + L   +DGM   +    +  V+ P + L+K
Sbjct: 349  NPWDEIEHRYQIGRQVKGTVRNLTAYGAFVELEEGIDGMIHVSDMSWTKKVNHPSEVLKK 408

Query: 1373 IEDLSPNMI---------------------------------VQGYVKNVTSKGCFIMLS 1399
             +++   +I                                 V+G V  +T+ G FI L 
Sbjct: 409  GDEIEAVVIDIDKQNQRISLGIKQLEGDPWKEIENKYKIGDLVKGKVSKITTFGAFISLE 468

Query: 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD-SRTASQS 1458
              +D  + +S +S+  V+  +    +G+ V  RV+ V+   +R+ ++LK ++ S    + 
Sbjct: 469  GDIDGLIHISQISEDRVDKIKDHLKVGQEVEARVIKVDKTERRIGLSLKAANYSEEDIKR 528

Query: 1459 EINNLSNLHVGDIVIG 1474
            E      L  G+ ++G
Sbjct: 529  EAAAFDALKPGEDMVG 544



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G V+N+T+ G F+ L   +D  + +S++S    V  P +    G  +   V+ ++  +
Sbjct: 364  VKGTVRNLTAYGAFVELEEGIDGMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVIDIDKQN 423

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ + +K  +     + E    +   +GD+V G++ ++ ++G FI++E
Sbjct: 424  QRISLGIKQLEGDPWKEIE----NKYKIGDLVKGKVSKITTFGAFISLE 468



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VKN+T  G FI L   +D  + +++++ G +  P +   +G+ +   VL +    +
Sbjct: 192  VKGVVKNLTDFGAFIDLD-GMDGLLHITDMTWGRLGHPSELVKVGQELDVIVLDINKEKE 250

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            RV + LK +      ++E    +   VG  V G+I  +  YG F+ IE
Sbjct: 251  RVSLGLKQTQKNPWEETE----NRFPVGSKVKGKITNLVPYGAFVEIE 294


>gi|184155356|ref|YP_001843696.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227515174|ref|ZP_03945223.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260662131|ref|ZP_05863027.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
 gi|183226700|dbj|BAG27216.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227086506|gb|EEI21818.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260553514|gb|EEX26406.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
          Length = 410

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I++A   E      S++  G VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 182 IVQAQHEEAAKKIFSELAAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 240

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
               +VG E+  +VL V  + +RI+++ K+TL      I    A  T   +  G + ++ 
Sbjct: 241 ADVLEVGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVGT---VLTGTVKRLT 297

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 298 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSI 354



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 63/355 (17%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 663
           +GV+G  P ++L   P    + +  VG  +   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGVVPANQLSTKPVDNINDVVKVGDELDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 664 --------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
                   DD    G  ++  V       +VV    +G+   ++ T+H  + L       
Sbjct: 105 WNEIQKKFDD----GETITATVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK--- 157

Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNII 773
                G E +  ++    S N L+ +   ++ +  +  +    S +    VV G V  + 
Sbjct: 158 -----GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELAAGDVVEGKVARMT 212

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G F+  LG + G    S+         +    VGQ V+  +L+V+ E  RI+LS+KQ+
Sbjct: 213 NFGAFID-LGGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPERERISLSIKQT 271

Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                D         +EEK A                   +G+V+ G V     FG  V 
Sbjct: 272 LPGPWDD--------IEEKAA-------------------VGTVLTGTVKRLTSFGAFV- 303

Query: 894 FEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            E    V G      I+H  +A     +E+G  ++  +L+V    + + LS+K +
Sbjct: 304 -EVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKAL 357



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +L+   +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL
Sbjct: 197  ELAAGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVL 255

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +V+P  +R+ +++K +        E        VG ++ G +KR+ S+G F+ +
Sbjct: 256  NVDPERERISLSIKQTLPGPWDDIE----EKAAVGTVLTGTVKRLTSFGAFVEV 305



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 34/196 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G+++++ +   G  + +G  + G VH +E+           YD     P    + 
Sbjct: 201  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEIS----------YDHVD-KPADVLEV 246

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KVL +         + LS++ +L G               P   +E  E  +  
Sbjct: 247  GQEVKVKVLNVDPERE---RISLSIKQTLPG---------------PWDDIE--EKAAVG 286

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+V+P 
Sbjct: 287  TVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPE 346

Query: 1440 SKRVEVTLKTSDSRTA 1455
             +R+ +++K  +   A
Sbjct: 347  RQRLGLSIKALEEAPA 362


>gi|387823727|ref|YP_005823198.1| 30S ribosomal protein S1 [Francisella cf. novicida 3523]
 gi|328675326|gb|AEB28001.1| SSU ribosomal protein S1p [Francisella cf. novicida 3523]
          Length = 556

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 148/350 (42%), Gaps = 31/350 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G V+KG V  +  FGA +   GGV  L  +  +S   I  P     +G E+  +V+ 
Sbjct: 189 ISEGSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +RI++  K+      L I +        +   G +T I  +GCFV+   G++G  
Sbjct: 248 FDKEKQRISLGIKQLGEDPWLNIANELPVGAKLM---GTVTNITDYGCFVKLKEGIEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLG 670
             SE+   +    P     +GQ V+  ++     + RI+L     +P   SE +   K G
Sbjct: 305 HTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPNPWSEFEKNYKPG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
             V+G +  +T   V +     G   G     H++D   ++       +K G E + +LV
Sbjct: 365 DKVTGKIRSITEFGVFI-----GLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLV 419

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPN-SVVHGYVCNIIETGCFVRF-- 781
            ++ +   + LS K        QL  D      +IHP  S+V G V  + + G  V    
Sbjct: 420 SVNTDLERIALSMK--------QLSEDPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDE 471

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + GF   S+       D+      GQ V + I++++++   I LS+K
Sbjct: 472 DNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSIALSIK 521



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/460 (20%), Positives = 181/460 (39%), Gaps = 71/460 (15%)

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS--- 572
            PG +    P+  ++  E            ++  +V+ + +KR  I V+ K  + ++   
Sbjct: 131 LPGSLVDTRPIKDVAHLE----------DKDIELKVVKIDTKRNNIVVSRKAVIEENNSG 180

Query: 573 -KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            + A+L   +E +   +  G +  I   G F+    GV G    +++       P+ +  
Sbjct: 181 DRDAMLEKISEGS---VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLS 236

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAV 685
           +GQ +  +++      +RI+L       ++ ED  + +      G+ + G V  +T    
Sbjct: 237 IGQEIDVKVIKFDKEKQRISLGI----KQLGEDPWLNIANELPVGAKLMGTVTNITDYGC 292

Query: 686 VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-LVLDNESSNLLLSAKYS 744
             +V  K   +G + T  +    ++    K+V   G E + + L LD ++  + L  K  
Sbjct: 293 --FVKLKEGIEGLVHTSEMDWTNKNVNPHKAV-SIGQEVEVIVLELDADNHRISLGIKQC 349

Query: 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
             N   +      +  P   V G + +I E G F+   G + G    S       A   K
Sbjct: 350 RPNPWSEFEK---NYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIK 406

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
               G  V + ++ VN++  RI LS+KQ        +F+  H                  
Sbjct: 407 ELKKGDEVEAVLVSVNTDLERIALSMKQ-LSEDPFKNFINIHPK---------------- 449

Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-------THHQLAGATVESG 917
                     GS++ GKV +  D G VV  +E +++ GFI        H +     +  G
Sbjct: 450 ----------GSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEG 499

Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
             ++A I+++   +R + LS+K V  D      SN + ++
Sbjct: 500 QEVEARIINIDAKKRSIALSIKAVDEDNTAAGKSNYKVEQ 539



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            + G V N+T  GCF+ L   ++  V  S +  ++  V +P K   IG+ V   VL ++  
Sbjct: 280  LMGTVTNITDYGCFVKLKEGIEGLVHTSEMDWTNKNV-NPHKAVSIGQEVEVIVLELDAD 338

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            + R+ + +K       S+ E     N   GD V G+I+ +  +G+FI +E
Sbjct: 339  NHRISLGIKQCRPNPWSEFE----KNYKPGDKVTGKIRSITEFGVFIGLE 384



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E +S   +++G VKN+T  G FI L   +D  + ++++S   +  P     IG+ +  +
Sbjct: 186  LEKISEGSVLKGIVKNITDFGAFIDLG-GVDGLLHITDISWSRISHPTDVLSIGQEIDVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            V+  +   +R+ + +K    +      +N  + L VG  ++G +  +  YG F+ ++
Sbjct: 245  VIKFDKEKQRISLGIK----QLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297


>gi|407789375|ref|ZP_11136476.1| 30S ribosomal protein S1 [Gallaecimonas xiamenensis 3-C-1]
 gi|407206733|gb|EKE76683.1| 30S ribosomal protein S1 [Gallaecimonas xiamenensis 3-C-1]
          Length = 557

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 145/350 (41%), Gaps = 30/350 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      ++I   Y E        G +T +  +GCFV    GV+G 
Sbjct: 247 KFDRERTRVSLGLKQLGADPWVSIAERYPEGHK---LKGRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-- 669
              SE+   +    PS + ++G  V+  ++      RRI+L          E+   +   
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVMVLDIDEERRRISLGLKQCKQNPWEEFAGRFNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  VSG +  +T   + +     G   G     HL+D   +AT  ++V   K G E    
Sbjct: 364 GDQVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNATGDEAVREYKKGEEITAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-----SVVHGYVCNIIETGCFVRF 781
           +L +D E   + L  K        QL +D  + + N     ++V G V  +   G  +  
Sbjct: 419 VLQVDAERERISLGVK--------QLEADPFNNYLNDKKKGAIVIGTVIAVDAKGATIDL 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + G+   S     +  D S     G+ V +  + V+ +   I+LS++
Sbjct: 471 GEGVEGYLRASDISRERIEDASTVLKAGEEVEAKFMGVDRKNRTISLSIR 520



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 45/357 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L+ +QEGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LQNLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L +DP             +SI    P G  +  RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGADP------------WVSIAERYPEGHKLKGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N   +V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMVLDIDEERRRISLGLKQCKQ 351

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+       N+      K+  I D    + +D G+  L+ +          ++ +   +
Sbjct: 352 NPWEEFAGRFNKGDQVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNATGD 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK +E + V +++   R    L    L+A  F   +   +D K G +V G VI
Sbjct: 404 EAVREY-KKGEEITAVVLQVDAERERISLGVKQLEADPFNNYL---NDKKKGAIVIGTVI 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           AVD+ GA +    GV+       +S   I       K G E+  + +GV  K  T++
Sbjct: 460 AVDAKGATIDLGEGVEGYLRASDISRERIEDASTVLKAGEEVEAKFMGVDRKNRTIS 516


>gi|403052324|ref|ZP_10906808.1| 30S ribosomal protein S1 [Acinetobacter bereziniae LMG 1003]
 gi|445424794|ref|ZP_21437054.1| ribosomal protein S1 [Acinetobacter sp. WC-743]
 gi|444754258|gb|ELW78883.1| ribosomal protein S1 [Acinetobacter sp. WC-743]
          Length = 558

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 SQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI++ Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDKERNRVSLGLKQLGEDPWLAIMNRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFSKS 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D    E         K G   
Sbjct: 361 HDKGEKVSGTIKSITDFGIFI-----GLPGGIDGLVHLSDISWNEQGEDAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        Q+ SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QMNSDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEASLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 137/324 (42%), Gaps = 41/324 (12%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVRVDR 421
           ++V  ++L  D     V L L     +P+L + NR P   +   +V ++ D      +  
Sbjct: 239 QEVTVKVLKFDKERNRVSLGLKQLGEDPWLAIMNRYPKGSIVKARVTNLTDYGCFAEIAE 298

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  +     V I D  +  V +++++       R RI LG +    
Sbjct: 299 GVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE-------RRRISLGIKQT-- 349

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 +A+ +E    +H     G  V G + ++  FG  +  PGG+  L  L  +S  E
Sbjct: 350 ------RANPWEEFSKSHD---KGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNE 400

Query: 536 IVKPG-KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHG 591
             +   +++K G   E V   +  +  RI++  K+          + +  A +R  +  G
Sbjct: 401 QGEDAIRRYKKGDTVEAVILSVDAEGNRISLGIKQMNSDP----FNDFLAANERGALVKG 456

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +T ++  G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR IN
Sbjct: 457 TVTAVDAKGATVKLADEVEASLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSIN 516

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSG 675
           LS   K     ++ +  L +  +G
Sbjct: 517 LSIKAKDEAEEKEAVANLKTAANG 540



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 79/410 (19%), Positives = 167/410 (40%), Gaps = 66/410 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  S +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLSQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDKERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
              ++ +L     A++               +  GS+++ +V    D+G      E   V 
Sbjct: 262  LGEDPWL-----AIMNR-------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E + + 
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFSKSH 361

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQ 1012
               +K           V  T+ +I +      + + LP     + + S   +N Q +   
Sbjct: 362  DKGEK-----------VSGTIKSITDF----GIFIGLPGGIDGLVHLSDISWNEQGEDAI 406

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 1072
            +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+  +T
Sbjct: 407  RRYKKGDTVEAVILSVDAEGN--RISLGIKQMNSDPFNDFLAANER-----GALVKGTVT 459

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 460  AVDAKGATVKLADEVEASLKASEINRDR---VEDATKFLEVGQEVEAKII 506


>gi|332284738|ref|YP_004416649.1| transcription accessory protein [Pusillimonas sp. T7-7]
 gi|330428691|gb|AEC20025.1| transcription accessory protein [Pusillimonas sp. T7-7]
          Length = 571

 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 158/374 (42%), Gaps = 34/374 (9%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+AS  E        +  G VVKG V  +  +GA V   GG+  L  +  M+   +  P
Sbjct: 183 VLEASMGEERQKLLETLSEGAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHP 241

Query: 540 GKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +VG E+  +VL    +  R+++  K+      + +   Y + T RL   G +T + 
Sbjct: 242 SEVLQVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLT 298

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            +G FV    G++G    SE+   +   +P  +  +G  V+  ++      RRI+L   M
Sbjct: 299 DYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGDEVEVMVLEIDEDRRRISLG--M 356

Query: 657 KPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
           K  R +  +      K G  V G +  +T   V V     G   G     HL+D     T
Sbjct: 357 KQCRANPWEEFSINFKRGDKVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTET 411

Query: 713 VMKSV--IKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSV 764
             ++V   K G E D +++ +D +   + L  K        QL  D      +     +V
Sbjct: 412 GEEAVRNFKKGDEIDAVVLGIDTDKERISLGIK--------QLEGDPFNNFVATYDKGAV 463

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
           V G + ++   G  V     + G+   S+   G+  D S    VG +V + I++++ +T 
Sbjct: 464 VPGVIKSVEARGAVVTLSVDVEGYLRASEISTGRVEDASTVLNVGDTVDTMIINIDRKTR 523

Query: 825 RITLSLKQSCCSST 838
            I LS+K    + T
Sbjct: 524 SIQLSIKARDNADT 537



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 136/317 (42%), Gaps = 39/317 (12%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V A++L  D     V L +     +P++   R  P       KV ++ D    V V+ 
Sbjct: 249 QEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEA 308

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ D  E  V ++++        R RI LG +    
Sbjct: 309 GIEGLVHVSEMDWTNKNVDPRKVVTLGDEVEVMVLEIDED-------RRRISLGMKQC-- 359

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 +A+ +E       + K G  V+G + ++  FG  V  PGG+  L  L  +S  E
Sbjct: 360 ------RANPWEEFSI---NFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTE 410

Query: 536 IVKPG-KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
             +   + FK G E+   VLG+ +  +RI++  K+         +++Y +     +  G 
Sbjct: 411 TGEEAVRNFKKGDEIDAVVLGIDTDKERISLGIKQLEGDPFNNFVATYDKGA---VVPGV 467

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           I  +E  G  V     V+G+   SE+      + S++ +VG  V   I++    +R I L
Sbjct: 468 IKSVEARGAVVTLSVDVEGYLRASEISTGRVEDASTVLNVGDTVDTMIINIDRKTRSIQL 527

Query: 653 SFMMKPTRVSEDDLVKL 669
           S   +    + D + ++
Sbjct: 528 SIKARDNADTADTIQRM 544



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 23/172 (13%)

Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI-EDLS 1377
            EG+ ++ KV+++ R      +V LS R+ L+               + G+  +K+ E LS
Sbjct: 158  EGKTMEFKVIKLDRKRN---NVVLSRRAVLEA--------------SMGEERQKLLETLS 200

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
               +V+G VKN+T  G F+ L   +D  + +++++   V  P +   +G+ V  +VL  +
Sbjct: 201  EGAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFD 259

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
                RV + +K    +      +        G  + G++  +  YG F+ +E
Sbjct: 260  QEKSRVSLGVK----QLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVE 307


>gi|118496773|ref|YP_897823.1| 30S ribosomal protein S1 [Francisella novicida U112]
 gi|194324082|ref|ZP_03057857.1| 30S ribosomal protein S1 [Francisella novicida FTE]
 gi|208779955|ref|ZP_03247298.1| ribosomal protein S1 [Francisella novicida FTG]
 gi|254372138|ref|ZP_04987631.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375284|ref|ZP_04990764.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
 gi|385792087|ref|YP_005825063.1| hypothetical protein [Francisella cf. novicida Fx1]
 gi|118422679|gb|ABK89069.1| 30S ribosomal protein S1 [Francisella novicida U112]
 gi|151569869|gb|EDN35523.1| 30S ribosomal protein S1 [Francisella novicida GA99-3549]
 gi|151573002|gb|EDN38656.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
 gi|194321979|gb|EDX19462.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           FTE]
 gi|208743959|gb|EDZ90260.1| ribosomal protein S1 [Francisella novicida FTG]
 gi|328676233|gb|AEB27103.1| SSU ribosomal protein S1p [Francisella cf. novicida Fx1]
          Length = 556

 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 148/350 (42%), Gaps = 31/350 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G V+KG V  +  FGA +   GGV  L  +  +S   I  P     +G E+  +V+ 
Sbjct: 189 ISEGSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +RI++  K+      L I +        +   G +T I  +GCFV+   G++G  
Sbjct: 248 FDKEKQRISLGIKQLGEDPWLNIANELPVGAKLM---GTVTNITDYGCFVKLKEGIEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLG 670
             SE+   +    P     +GQ V+  ++     + RI+L     +P   SE +   K G
Sbjct: 305 HTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPNPWSEFEKNYKPG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
             V+G +  +T   V +     G   G     H++D   ++       +K G E + +LV
Sbjct: 365 DKVTGKIRSITEFGVFI-----GLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLV 419

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPN-SVVHGYVCNIIETGCFVRF-- 781
            ++ +   + LS K        QL  D      +IHP  S+V G V  + + G  V    
Sbjct: 420 SVNTDLERIALSMK--------QLSEDPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDE 471

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + GF   S+       D+      GQ V + I++++++   I LS+K
Sbjct: 472 DNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSIALSIK 521



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/460 (20%), Positives = 181/460 (39%), Gaps = 71/460 (15%)

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS--- 572
            PG +    P+  ++  E            ++  +V+ + +KR  I V+ K  + ++   
Sbjct: 131 LPGSLVDTRPIKDVAHLE----------DKDIELKVVKIDTKRNNIVVSRKAVIEENNSG 180

Query: 573 -KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            + A+L   +E +   +  G +  I   G F+    GV G    +++       P+ +  
Sbjct: 181 DRDAMLEKISEGS---VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLS 236

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAV 685
           +GQ +  +++      +RI+L       ++ ED  + +      G+ + G V  +T    
Sbjct: 237 IGQEIDVKVIKFDKEKQRISLGI----KQLGEDPWLNIANELPVGAKLMGTVTNITDYGC 292

Query: 686 VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-LVLDNESSNLLLSAKYS 744
             +V  K   +G + T  +    ++    K+V   G E + + L LD ++  + L  K  
Sbjct: 293 --FVKLKEGIEGLVHTSEMDWTNKNVNPHKAV-SIGQEVEVIVLELDADNHRISLGIKQC 349

Query: 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
             N   +      +  P   V G + +I E G F+   G + G    S       A   K
Sbjct: 350 RPNPWSEFEK---NYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIK 406

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
               G  V + ++ VN++  RI LS+KQ        +F+  H                  
Sbjct: 407 ELKKGDEVEAVLVSVNTDLERIALSMKQ-LSEDPFKNFINIHPK---------------- 449

Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-------THHQLAGATVESG 917
                     GS++ GKV +  D G VV  +E +++ GFI        H +     +  G
Sbjct: 450 ----------GSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEG 499

Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
             ++A I+++   +R + LS+K V  D      SN + ++
Sbjct: 500 QEVEARIINIDAKKRSIALSIKAVDEDNTAAGKSNYKVEQ 539



 Score = 43.9 bits (102), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            + G V N+T  GCF+ L   ++  V  S +  ++  V +P K   IG+ V   VL ++  
Sbjct: 280  LMGTVTNITDYGCFVKLKEGIEGLVHTSEMDWTNKNV-NPHKAVSIGQEVEVIVLELDAD 338

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            + R+ + +K       S+ E     N   GD V G+I+ +  +G+FI +E
Sbjct: 339  NHRISLGIKQCRPNPWSEFE----KNYKPGDKVTGKIRSITEFGVFIGLE 384



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E +S   +++G VKN+T  G FI L   +D  + ++++S   +  P     IG+ +  +
Sbjct: 186  LEKISEGSVLKGIVKNITDFGAFIDLG-GVDGLLHITDISWSRISHPTDVLSIGQEIDVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            V+  +   +R+ + +K    +      +N  + L VG  ++G +  +  YG F+ ++
Sbjct: 245  VIKFDKEKQRISLGIK----QLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297


>gi|332799296|ref|YP_004460795.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Tepidanaerobacter acetatoxydans Re1]
 gi|438002432|ref|YP_007272175.1| SSU ribosomal protein S1p [Tepidanaerobacter acetatoxydans Re1]
 gi|332697031|gb|AEE91488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Tepidanaerobacter acetatoxydans Re1]
 gi|432179226|emb|CCP26199.1| SSU ribosomal protein S1p [Tepidanaerobacter acetatoxydans Re1]
          Length = 668

 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 163/389 (41%), Gaps = 49/389 (12%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T +D+K   +V+G V+ VD+   +V        + P+  +S+     P    KVG ++  
Sbjct: 298 TFTDLKEDTIVEGTVVKVDNNEVLVNIGYKSDGIIPINELSDIAFESPEDIIKVGDKIQV 357

Query: 552 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH-----GWITKIEKHGCFVRFY 606
            ++ ++ +   V     L K K  I++++    D +  H     G +T++ K G  V   
Sbjct: 358 YIMKLEDEDGNVV----LSKKKADIINTWNYIED-IYNHQGDLEGIVTEVVKGGVLVDI- 411

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----------FMM 656
           NG++GF P S L L     P     VG+ +K  I+       RI LS           + 
Sbjct: 412 NGIKGFIPASHLDLR--YVPDLNVFVGKKLKLHILELDRNKNRIVLSRKYVLEREREELK 469

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMK 715
           + T  S    ++ G  V GVV  +T     V +   G   G I    LA   ++H +   
Sbjct: 470 EKTWAS----IEEGQTVKGVVKRLTGFGAFVDI---GGVDGLIHISDLAWQKIKHPS--- 519

Query: 716 SVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
            ++K   E + L++ +D E   + L  K  + N   +L    +     S++ G V  ++ 
Sbjct: 520 EIVKEEQEVEVLVLKVDKERERISLGLKQIMPNPWDELDEKYT---IGSIIEGKVVKLVN 576

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            G FV     + G    S+      A+       G SV+  ILDV+++  R++LS+K++ 
Sbjct: 577 FGAFVEVAPGVEGLVHISQISQEHIANPEDVLKEGDSVKVKILDVDTKGKRMSLSIKEAQ 636

Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
              +           +E I M +  K NG
Sbjct: 637 YKES-----------QENIKMYEKPKENG 654



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLE 474
           VV+   G G  +DI          + ISD+A ++++   +  KE   V V +L   +  E
Sbjct: 485 VVKRLTGFGAFVDIGGVD----GLIHISDLAWQKIKHPSEIVKEEQEVEVLVLKVDKERE 540

Query: 475 GLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
            ++ G+  +  + ++ L   ++    G +++GKV+ + +FGA V+   GV+ L  +  +S
Sbjct: 541 RISLGLKQIMPNPWDELDEKYT---IGSIIEGKVVKLVNFGAFVEVAPGVEGLVHISQIS 597

Query: 533 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           +  I  P    K G  +  ++L V  K KR++++ K+   K     +  Y +  +  IT 
Sbjct: 598 QEHIANPEDVLKEGDSVKVKILDVDTKGKRMSLSIKEAQYKESQENIKMYEKPKENGITI 657

Query: 591 G 591
           G
Sbjct: 658 G 658


>gi|383501652|ref|YP_005415011.1| 30S ribosomal protein S1 [Rickettsia australis str. Cutlack]
 gi|378932663|gb|AFC71168.1| 30S ribosomal protein S1 [Rickettsia australis str. Cutlack]
          Length = 568

 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 156/363 (42%), Gaps = 24/363 (6%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGIVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +   T      G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGT---TMTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHASEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359

Query: 656 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
               +  E+ L+K      +G+++   +  +T   +  +V       G I    ++   +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDK 414

Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
              ++KS  K G E + ++L ++ E   + L  K  L N  Q++   +      ++V   
Sbjct: 415 GTDLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLLPNPYQEI---SDEYKKGTIVKAL 470

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           +  + + G  V    ++ GF  R++  D +     + + + + + + ++ ++  TGRI L
Sbjct: 471 ITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIDKSTGRILL 530

Query: 829 SLK 831
           S+K
Sbjct: 531 SVK 533



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 130/602 (21%), Positives = 247/602 (41%), Gaps = 103/602 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V    + ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKCEFLALPEVGDVVEV---FIEKI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G+V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGIVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +       + + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGTTMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELKDGLEGLVHASEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                 +K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------IKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + +   
Sbjct: 400  MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLLPNPY--- 454

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                        +E S +      V A++  VK++ L + L   N   G+   ++ + +K
Sbjct: 455  ------------QEISDEYKKGTIVKALITEVKDDGLEVLL--NNKVAGFIKRTELSDEK 500

Query: 1010 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 1065
              QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G 
Sbjct: 501  DEQKPEMFKIDEEIEAKVVSIDKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558

Query: 1066 LV 1067
            ++
Sbjct: 559  IL 560



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +  +   M+++G VKN+T  G FI L   +D  + L+++S G V  P +     + V 
Sbjct: 197  EMLSKIKEGMVLEGIVKNITDYGAFIDLG-SVDGLLHLTDISWGRVNHPSEVLEFNQKVK 255

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              V+  +  +KR+ + +K  DS      +        VG  + G++     YG+FI +++
Sbjct: 256  VMVIKFDEKTKRISLGIKQLDSNPWEAIK----EEFPVGTTMTGKVTNFADYGVFIELKD 311


>gi|15604379|ref|NP_220895.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Madrid E]
 gi|383487924|ref|YP_005405603.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Chernikova]
 gi|383488770|ref|YP_005406448.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Katsinyian]
 gi|383489609|ref|YP_005407286.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Dachau]
 gi|383499750|ref|YP_005413111.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. BuV67-CWPP]
 gi|386082370|ref|YP_005998947.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Rp22]
 gi|6226091|sp|Q9ZD28.1|RS1_RICPR RecName: Full=30S ribosomal protein S1
 gi|3861071|emb|CAA14971.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Rickettsia prowazekii str. Madrid
           E]
 gi|292572134|gb|ADE30049.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Rp22]
 gi|380760803|gb|AFE49325.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Chernikova]
 gi|380761649|gb|AFE50170.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Katsinyian]
 gi|380762496|gb|AFE51016.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. BuV67-CWPP]
 gi|380763332|gb|AFE51851.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Dachau]
          Length = 568

 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 156/362 (43%), Gaps = 24/362 (6%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           IL+ S  E      S +K G+V++G V  +  +GA +   G V  L  L  +S   +  P
Sbjct: 186 ILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +   ++   V+    K+KRI++  K+       AI   +          G +T   
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301

Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            +G F+   +G++G    SE+  L     P  M  +GQ V+  ++       R++LS   
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359

Query: 657 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
              +  E+ L+K      +G+++   +  +T   +  +V+      G I    ++     
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
             ++KS  K G E + ++L ++ E   + L  K  L N  Q++   +     +++V   V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQKI---SDEYKKSTIVKAVV 471

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             I + G  V    ++TGF  R +  D +     + + V + + + ++ +   TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLS 531

Query: 830 LK 831
           +K
Sbjct: 532 IK 533



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 136/612 (22%), Positives = 248/612 (40%), Gaps = 107/612 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR+ L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ GVV  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGIVLEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
            F+Q     ++  D ++  + L  K    N     P DA          + G V N  + G
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304

Query: 777  CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
             F+     L G    S+ +      +  K   +GQ V   +L+V++E  R++LS+KQ C 
Sbjct: 305  VFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C- 362

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                    QE+ L                 +K+ E   IG++I+  +    DFG+ V   
Sbjct: 363  --------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVLG 397

Query: 896  EHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             + D  G I    ++          + + G  I+  +L +   +  V L +K +  + ++
Sbjct: 398  NNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQ 455

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
            + +   +                   V A+V  +K++ LV+ L   N   G+    + + 
Sbjct: 456  KISDEYKKS---------------TIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELSD 498

Query: 1008 QKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDV 1063
            +K  QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++
Sbjct: 499  EKDEQKPEMFKVHEEIDAKVVSIEKST--GRVLLSIKAHKIAERQKTLKEYGSSDNTTNM 556

Query: 1064 GSLVQAEITEIK 1075
            G ++   + E K
Sbjct: 557  GDILANVLEEKK 568


>gi|238855194|ref|ZP_04645513.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3]
 gi|260664557|ref|ZP_05865409.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US]
 gi|313471977|ref|ZP_07812469.1| ribosomal protein S1 [Lactobacillus jensenii 1153]
 gi|238832086|gb|EEQ24404.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3]
 gi|239529091|gb|EEQ68092.1| ribosomal protein S1 [Lactobacillus jensenii 1153]
 gi|260561622|gb|EEX27594.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US]
          Length = 402

 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+GKV  + +FGA V   GGV  L  +  +S   I KP    K G ++  +V+G+  
Sbjct: 198 GDIVEGKVSRLTNFGAFVDV-GGVDGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDD 256

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 614
            R    H+ +L   K    S + +AT  L    +  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISL-SIKQTEPSPFEQATSELSEGEVVEGEVKSLTSFGAFVEVADGIQGLVH 311

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            SE+      +PS +  VG+ VK ++++  P  +RI+LS 
Sbjct: 312 VSEISNKRVEKPSDVLKVGETVKVKVLNINPDEKRISLSI 351



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 52/236 (22%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++S++ +   G  V +G  + G VH +E+    +  P         D L     
Sbjct: 198  GDIVEGKVSRLTNF--GAFVDVGG-VDGLVHISEISYKHIDKP--------SDVLK---T 243

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KV+ I         + LS++ +                  P    +   +LS  
Sbjct: 244  GQDVKVKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATSELSEG 283

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +V+G VK++TS G F+ ++  +   V +S +S+  VE P     +G+ V  +VL++ P 
Sbjct: 284  EVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLNINPD 343

Query: 1440 SKRVEVTLKTSD----------SRTASQSEI--------NNLSNLHVGDIVIGQIK 1477
             KR+ +++K +            R+AS+++         NN +   +GDI+  Q+K
Sbjct: 344  EKRISLSIKQAQPAAEGEGNNARRSASRNDSVAKKYMSDNNDNGFALGDIIGDQLK 399



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 14/171 (8%)

Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
           S +  GDI  + KV R+    G  +D+          V IS+++ + + K     K G  
Sbjct: 193 SQLVAGDIV-EGKVSRL-TNFGAFVDVGGVD----GLVHISEISYKHIDKPSDVLKTGQD 246

Query: 463 VRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           V+V+++G    RH   L+    + S FE      S++  G VV+G+V ++ SFGA V+  
Sbjct: 247 VKVKVIGIDDDRHRISLSIKQTEPSPFEQAT---SELSEGEVVEGEVKSLTSFGAFVEVA 303

Query: 520 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKT 568
            G++ L  +  +S   + KP    KVG  +  +VL +    KRI+++ K+ 
Sbjct: 304 DGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLNINPDEKRISLSIKQA 354



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 130/314 (41%), Gaps = 38/314 (12%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGW 592
           ++VKPG  FK    LV R  G   +        T +K + A   L    EA + +   G 
Sbjct: 64  DLVKPGDTFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLEKDYEAGNAI--EGT 118

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELG------LDPGCEPSSMYHVGQVVKCRIMSSIPA 646
           +T   + G  V    G +GF P S +       L P        ++G+ +K +I    P 
Sbjct: 119 VTSSVRGGLIVNV--GTRGFLPASLISNHFVSDLKP--------YIGKTIKVKITEIDPN 168

Query: 647 SRRINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
             R+ LS         E+    +      G +V G V  +T     V V   G   G + 
Sbjct: 169 KNRLILSHKELIEEEREEAFETVASQLVAGDIVEGKVSRLTNFGAFVDV---GGVDGLVH 225

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
              ++   +H      V+K G +   +++ +D++   + LS K +  +  +Q  S+ S  
Sbjct: 226 ISEIS--YKHIDKPSDVLKTGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSELSE- 282

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               VV G V ++   G FV     + G    S+  + +    S    VG++V+  +L++
Sbjct: 283 --GEVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLNI 340

Query: 820 NSETGRITLSLKQS 833
           N +  RI+LS+KQ+
Sbjct: 341 NPDEKRISLSIKQA 354



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV+G V  +T+ G F+ +   +D  V +S +S  +++ P      G+ V  +V+ ++   
Sbjct: 200  IVEGKVSRLTNFGAFVDVG-GVDGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDDDR 258

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             R+ +++K ++     Q+     S L  G++V G++K + S+G F+ +
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSELSEGEVVEGEVKSLTSFGAFVEV 302


>gi|365153573|ref|ZP_09350012.1| ribosomal protein S1 [Campylobacter sp. 10_1_50]
 gi|416113462|ref|ZP_11593319.1| SSU ribosomal protein S1p [Campylobacter concisus UNSWCD]
 gi|363651585|gb|EHL90643.1| ribosomal protein S1 [Campylobacter sp. 10_1_50]
 gi|384578508|gb|EIF07772.1| SSU ribosomal protein S1p [Campylobacter concisus UNSWCD]
          Length = 558

 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 120/514 (23%), Positives = 202/514 (39%), Gaps = 75/514 (14%)

Query: 457 YKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           +K G  ++V I G R+   + +    L+    +  +  +     G +   KV+  +  G 
Sbjct: 75  HKVGDTIKVVITGSRNGRPIVSHKKALRKEKVKAFIEAYDPENSGEI-DVKVVGKNKGGF 133

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKP--GKKFKVGAELVFRVLGVKSKR--ITVTHKKTL- 569
           I Q   GV+   P  H S F+  +   GK +KV      RV+ V  +   I V+ KK L 
Sbjct: 134 ITQDANGVEFFLPRTH-SGFKNAEGVVGKSYKV------RVIKVDKEENSIVVSRKKILD 186

Query: 570 --VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
              K +   LS+  E  D +I  G + KI  +G FV    GV G    SE+       PS
Sbjct: 187 DDRKKRKEALSNIVE-NDSVI-EGTVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPS 243

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNA 684
           S+Y  G  V  +++S     R ++LS       P     +D +++G  +   V  + P  
Sbjct: 244 SLYKEGDKVLVKVISYDNEKRHLSLSIKAATPDPWEEIINDGLEVGDTIKVTVSNIEPYG 303

Query: 685 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNL 737
             V +       G      L  H+   +  K++  P      G E D +++ +D +   L
Sbjct: 304 AFVDL-------GNDIEGFL--HISEISWDKNIKNPKDHISEGQEIDVEVIEIDAKGHRL 354

Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            +S K  L     +     +      VV G V  I   G FVR +G + G      A   
Sbjct: 355 RVSLKNLLPKPFDEFK---AKFKEGDVVKGVVTTITNFGAFVR-VGCVEGLLHNEDASWD 410

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
           +       +  G  +   I+ ++S   +I+LSLK    S   A                 
Sbjct: 411 RNDKCKDMFKAGDELEVKIIKIDSAEQKISLSLKDLKQSPVQA----------------- 453

Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA---GATV 914
                     +   F +G +++G + +  DFGV V   ++ D    I    L     +T+
Sbjct: 454 ----------FANKFSVGDIVKGTIRDIKDFGVFVELGDNVD--ALIRKEDLGSVDASTL 501

Query: 915 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
           + G  I+AAI  + + +  + LS++ +   + RE
Sbjct: 502 KIGDEIEAAIAFIDEKKNRIRLSIRRLAKQKERE 535



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 119/279 (42%), Gaps = 44/279 (15%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +GK+    V+ ++KE+  + +  +   D    K      + +   +    ++ G + KI 
Sbjct: 159  VGKSYKVRVIKVDKEENSIVVSRKKILDDDRKK----RKEALSNIVENDSVIEGTVKKIT 214

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
            +   G+ V +G  + G VH++E+           Y +G  +P S Y EG  V  KV+   
Sbjct: 215  TY--GMFVDVGG-VDGLVHYSEI----------SY-KGPVNPSSLYKEGDKVLVKVISYD 260

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMIVQGYVKNVT 1390
               R   H+ LS++++                 TP    E I D L     ++  V N+ 
Sbjct: 261  NEKR---HLSLSIKAA-----------------TPDPWEEIINDGLEVGDTIKVTVSNIE 300

Query: 1391 SKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
              G F+ L   ++  + +S +S D  +++P+     G+ +   V+ ++    R+ V+LK 
Sbjct: 301  PYGAFVDLGNDIEGFLHISEISWDKNIKNPKDHISEGQEIDVEVIEIDAKGHRLRVSLKN 360

Query: 1450 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
               +   + +    +    GD+V G +  + ++G F+ +
Sbjct: 361  LLPKPFDEFK----AKFKEGDVVKGVVTTITNFGAFVRV 395


>gi|333907595|ref|YP_004481181.1| 30S ribosomal protein S1 [Marinomonas posidonica IVIA-Po-181]
 gi|333477601|gb|AEF54262.1| ribosomal protein S1 [Marinomonas posidonica IVIA-Po-181]
          Length = 560

 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 150/368 (40%), Gaps = 35/368 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +V
Sbjct: 187 ASLEEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIIAVGDEIDVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      +AI + Y E T        +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWVAIKARYPENTK---VTAKVTNLTDYGCFAELEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    PS +  +G  V+  ++      RRI+L      M P         
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVQIGDEVEVMVLDIDEERRRISLGIKQCTMNPWEEFATSFN 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 727
           K G  +SG +  +T   V +     G   G     HL+D L      +  ++   + D L
Sbjct: 363 K-GDKISGAIKSITDFGVFI-----GLDGGIDGLVHLSD-LSWDEAGEEAVRQYKKGDML 415

Query: 728 ----LVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCF 778
               L +D E   + L  K        QL  D   +++  N   ++V+G V  +   G  
Sbjct: 416 ETVVLSIDAERERISLGVK--------QLEEDPFLAYVAENDKGTIVNGTVSEVDAKGAV 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V     +      S+    +  D +     G SV + I++V+ +   ITLS+KQ   +  
Sbjct: 468 VTLSEGVEATLKVSEISRERVEDATTALKEGDSVEAAIINVDRKARTITLSIKQKDATEE 527

Query: 839 DASFMQEH 846
            A+ M+ H
Sbjct: 528 KAA-MKSH 534



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 81/386 (20%), Positives = 145/386 (37%), Gaps = 65/386 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL------------PRNNLAENSGIDV 274
           L +++EG  +   VK++ D+G  +  G     G L            P   +A    IDV
Sbjct: 186 LASLEEGQEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIIAVGDEIDV 243

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ +
Sbjct: 244 K--------VLKFDRERNRVSLGLKQLGEDP------------WVAIKARYPENTKVTAK 283

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 284 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQIGDEVEVMVLDIDEERRRIS 343

Query: 389 L-----TLNPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L     T+NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 344 LGIKQCTMNPWEEFATSFNKGDKISGAIKSITDFGVFIGLDGGIDGLVHLSD-------- 395

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKP 498
           ++  +  EE VR+    YK+G  +   +L      E ++ G+ +      L +   + K 
Sbjct: 396 LSWDEAGEEAVRQ----YKKGDMLETVVLSIDAERERISLGVKQLEEDPFLAYVAENDK- 450

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  VD+ GA+V    GV+A   +  +S   +       K G  +   ++ V  
Sbjct: 451 GTIVNGTVSEVDAKGAVVTLSEGVEATLKVSEISRERVEDATTALKEGDSVEAAIINVDR 510

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAE 582
           K++ IT++ K+     + A + S++E
Sbjct: 511 KARTITLSIKQKDATEEKAAMKSHSE 536



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 152/362 (41%), Gaps = 46/362 (12%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFKVGAELVFRV 553
           ++ PG +V G ++ +D+    V    G+K+   +P  S+F + + G+    +G E+   +
Sbjct: 17  EMAPGSIVTGIIVDIDNEWVTVH--AGLKSEGVIPR-SQF-LTESGEFNLNIGDEVKVAL 72

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             V+       ++ +K       ++L    E  +  I HG I    K G  V   N ++ 
Sbjct: 73  DAVEDGFGETKLSREKAKRAETWSVLEKAYE--ENAIVHGVINGKVKGGFTVDIAN-IRA 129

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           F P S + + P  + S +  V    K     +  +++  SRR     +M+ T  +E + +
Sbjct: 130 FLPGSLVDVRPIRDTSHLEGVDLEFKLIKLDQKRNNVVVSRRA----VMEATNSAERETL 185

Query: 668 ----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 722
               + G  V G+V  +T     V +   G   G +    +A   ++H +    +I  G 
Sbjct: 186 LASLEEGQEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRIKHPS---EIIAVGD 239

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETG 776
           E D ++L  D E + + L  K        QL  D      +    N+ V   V N+ + G
Sbjct: 240 EIDVKVLKFDRERNRVSLGLK--------QLGEDPWVAIKARYPENTKVTAKVTNLTDYG 291

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           CF      + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L +KQ  
Sbjct: 292 CFAELEEGVEGLVHVSE-MDWTNKNIHPSKVVQIGDEVEVMVLDIDEERRRISLGIKQCT 350

Query: 835 CS 836
            +
Sbjct: 351 MN 352


>gi|218961954|ref|YP_001741729.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730611|emb|CAO81523.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
           acidaminovorans str. Evry]
          Length = 503

 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 17/243 (6%)

Query: 461 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 520
           +C R+ ++  R LE +     K +A   L       K G +VKGKV+ + +FGA +   G
Sbjct: 177 NCRRI-VVSHRQLEEMREQERKETALAKL-------KVGDIVKGKVLRMTTFGAFIDL-G 227

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSY 580
           G++ L  +  +S   IV+P  + K G E+  ++L +K ++I ++ +K L++    +    
Sbjct: 228 GIEGLMHVSEISWQHIVRPQDELKKGQEIEVKILDIKGEKIALS-RKVLLEDPFEVAMKE 286

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-CEPSSMYHVGQVVKCR 639
               D  I +  + ++   G F     GV+G  P SE+  +     P  +   G  V+ +
Sbjct: 287 LHEGD--IINCRVLRLHNFGAFAELKPGVEGLIPISEMSRNRNISHPRDIVKEGDWVQVQ 344

Query: 640 IMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
           I+     + +I+LS         +  D++++L +   G+V+  T N  V   I++G + G
Sbjct: 345 ILRIDEDTHKISLSLKALEADPWDKIDEIIQLETPFEGIVESST-NFGVFVTISEGIT-G 402

Query: 698 TIP 700
            +P
Sbjct: 403 LLP 405


>gi|418619939|ref|ZP_13182750.1| 30S ribosomal protein S1 [Staphylococcus hominis VCU122]
 gi|374823502|gb|EHR87497.1| 30S ribosomal protein S1 [Staphylococcus hominis VCU122]
          Length = 393

 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V GKV  V+    +V   G     + P+  +S   I  P +    G E+   
Sbjct: 12  NDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAY 71

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 72  VTKIEIDEANESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDV--G 129

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 130 QRGFVPASLISTD-FIEDFSVFE-GQTIRLKVEELDPENNRVILS--RKAVEQAENDVKK 185

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 186 ASLLDSLNEGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVQSPEDVVSV 240

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E D ++  ++ ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 241 GQEVDVKVKSVEKDTERISLSIKDTLPTPFENI---KGKFHENDVIEGKVIRLANFGAFV 297

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+         S+    GQ V   IL ++ E  RI+LS+K + 
Sbjct: 298 EIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATL 352



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 189  LDSLNEGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVQSPEDVVSVGQEVDVK 247

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  ++R+ +++K     T      N     H  D++ G++ R+ ++G F+ I
Sbjct: 248  VKSVEKDTERISLSIKD----TLPTPFENIKGKFHENDVIEGKVIRLANFGAFVEI 299



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 116/292 (39%), Gaps = 59/292 (20%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV++    Y+ G IP   L+ H  H      +I  G E + 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYN-GIIPISQLSTH--HIENPSEIISEGDEIEA 70

Query: 727 LLV---LD--NESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIET 775
            +    +D  NES   +LS +        QL ++ S+      +  + V+   V  +++ 
Sbjct: 71  YVTKIEIDEANESGAYILSKR--------QLETEKSYEYLQEKLDNDEVIEAKVTEVVKG 122

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    
Sbjct: 123 GLVVDVGQR--GFVPASLISTDFIEDFS--VFEGQTIRLKVEELDPENNRVILSRKAVEQ 178

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
           +  D           +K ++L S                G VI+GKV    +FG  V   
Sbjct: 179 AENDV----------KKASLLDSLNE-------------GDVIKGKVARLTNFGAFVDI- 214

Query: 896 EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
               V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 215 --GGVDGLVHVSELSHEHVQSPE-------DVVSVGQEVDVKVKSVEKDTER 257



 Score = 44.3 bits (103), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 162/393 (41%), Gaps = 80/393 (20%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ +ED   ++H     + G +P + L+    EN    +  G  ++  V 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAYVT 73

Query: 285 -----------------RSIDRTRKVVYLSS--DPDTVSKC-VTKDLKG-ISIDL----L 319
                            R ++  +   YL    D D V +  VT+ +KG + +D+     
Sbjct: 74  KIEIDEANESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDVGQRGF 133

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           VP  ++ST           +   + F G      ++   P  N             R++ 
Sbjct: 134 VPASLISTD---------FIEDFSVFEGQTIRLKVEELDPENN-------------RVIL 171

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
              + +AV    N   +   +    +  GD+  + KV R+    G  +DI          
Sbjct: 172 ---SRKAVEQAEND--VKKASLLDSLNEGDVI-KGKVARL-TNFGAFVDIGGVD----GL 220

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLV--FTHS 494
           V +S+++ E V+  E     G  V V++    +  E ++  I     + FE +   F  +
Sbjct: 221 VHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDTERISLSIKDTLPTPFENIKGKFHEN 280

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           DV     ++GKVI + +FGA V+   GV+ L  +  ++   I  P +  + G ++  ++L
Sbjct: 281 DV-----IEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKIL 335

Query: 555 GV--KSKRITVTHKKTL-----VKSKLAILSSY 580
           G+  +++RI+++ K TL     ++S  A   SY
Sbjct: 336 GIDEENERISLSIKATLPNEDVIESDEATTQSY 368


>gi|83591633|ref|YP_425385.1| 30S ribosomal protein S1 [Rhodospirillum rubrum ATCC 11170]
 gi|386348315|ref|YP_006046563.1| 30S ribosomal protein S1 [Rhodospirillum rubrum F11]
 gi|83574547|gb|ABC21098.1| SSU ribosomal protein S1P [Rhodospirillum rubrum ATCC 11170]
 gi|346716751|gb|AEO46766.1| 30S ribosomal protein S1 [Rhodospirillum rubrum F11]
          Length = 573

 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 108/500 (21%), Positives = 199/500 (39%), Gaps = 87/500 (17%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMY---HVGQVVKC-RIMSSIPASRRINLSFM 655
            G F    +G   F P S++ + P  +   +     V Q++K  R   +I  SRR  L   
Sbjct: 128  GGFTVDLSGAIAFLPGSQVDIRPVRDIGPLLGQPQVFQILKMDRARGNIVVSRRAVLEET 187

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHA 711
                R    + ++ G ++ GVV  +T     V +   G   G +    ++    +H   A
Sbjct: 188  RAEERSKLMETLREGEILEGVVKNITDYGAFVDL---GGVDGLLHVTDISWKRINHPTEA 244

Query: 712  TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVH 766
              +   +K      Q++  + E+  + L  K        QL +D     A+     +   
Sbjct: 245  LSIGQTVKV-----QVIRFNAETQRISLGMK--------QLEADPWEGVAAKYPVGTKFV 291

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V NI + G FV     + G    S+ +   +     K     Q V   ILDV+ +  R
Sbjct: 292  GRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMILDVDPDKRR 351

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            I+L LKQ+  +                              +++EG  IG+ +EG++   
Sbjct: 352  ISLGLKQTMANPWS---------------------------EFLEGHPIGTEVEGEIKNI 384

Query: 886  NDFGVVVSFEEHSDVYGFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLS 937
             +FG+ +      D+ G I    L        A    + G V+QA +LDV   +  + L 
Sbjct: 385  TEFGLFIGL--TGDIDGMIHLSDLDWNRSGDEAVKDYKKGDVVQAKVLDVDVEKERISLG 442

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            +K +  D +REA +               DL  +Q V  ++ +V+EN + + +   N +I
Sbjct: 443  VKQLGEDPYREATA---------------DLRKNQIVTCVITMVQENGIEVDV---NGAI 484

Query: 998  GYASVSDYNTQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
            G+   SD   ++  Q+  +F  G+ V A V+ +  S+    L +  + + E + + ++  
Sbjct: 485  GFIRKSDLARERADQRPERFAVGEKVDAKVINMDKSNRRMTLSIKAREMDEEKQAMAEYG 544

Query: 1056 KKKSSYDVGSLVQAEITEIK 1075
               S   +G ++ A + + +
Sbjct: 545  SADSGASLGDILGAALKQAQ 564



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 17/185 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVL 554
           G  V+G++  +  FG  +   G +  +    H+S+ +  + G    K +K G  +  +VL
Sbjct: 374 GTEVEGEIKNITEFGLFIGLTGDIDGMI---HLSDLDWNRSGDEAVKDYKKGDVVQAKVL 430

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQ 610
            V      V  ++  +  K      Y EAT  L    I    IT ++++G  V   NG  
Sbjct: 431 DVD-----VEKERISLGVKQLGEDPYREATADLRKNQIVTCVITMVQENGIEVDV-NGAI 484

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
           GF  +S+L  +   +    + VG+ V  ++++   ++RR+ LS   +     +  + + G
Sbjct: 485 GFIRKSDLARERADQRPERFAVGEKVDAKVINMDKSNRRMTLSIKAREMDEEKQAMAEYG 544

Query: 671 SLVSG 675
           S  SG
Sbjct: 545 SADSG 549



 Score = 41.2 bits (95), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 74/164 (45%), Gaps = 18/164 (10%)

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
            +V +I +  R   ++ +S R+ L+   +   S L             +E L    I++G 
Sbjct: 162  QVFQILKMDRARGNIVVSRRAVLEETRAEERSKL-------------METLREGEILEGV 208

Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
            VKN+T  G F+ L   +D  + ++++S   +  P +   IG+ V  +V+     ++R+ +
Sbjct: 209  VKNITDYGAFVDLG-GVDGLLHVTDISWKRINHPTEALSIGQTVKVQVIRFNAETQRISL 267

Query: 1446 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +K  ++           +   VG   +G++  +  YG F+ +E
Sbjct: 268  GMKQLEADPWE----GVAAKYPVGTKFVGRVTNITDYGAFVELE 307


>gi|418293368|ref|ZP_12905277.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 14405 = CCUG
           16156]
 gi|379064760|gb|EHY77503.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 14405 = CCUG
           16156]
          Length = 560

 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 139/349 (39%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 189 LQEGQQVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +AI + Y E T        +T +  +GCF     GV+G  
Sbjct: 248 FDRERNRVSLGLKQLGEDPWVAIKARYPEGTR---VQARVTNLTDYGCFAELEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+   +    PS +  VG  V+  ++      RRI+L      T   ED       G
Sbjct: 305 HVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKTNPWEDFSGQFNKG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             +SG +  +T   + +     G   G     HL+D   +    ++V   K G E D  +
Sbjct: 365 DRISGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEPGEEAVRRFKKGDELDTVI 419

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL  D     A+     S+V G V  +   G  +   
Sbjct: 420 LSVDPERERISLGIK--------QLEDDPFSNYAAVNDKGSIVRGTVKEVDAKGAIIDLG 471

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       G  V + I+ ++ ++  I+LS+K
Sbjct: 472 NDIEATLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 155/367 (42%), Gaps = 45/367 (12%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D++PG ++ G V+ +D  G  V    G+K+   +P + +F   +     KVG E+   + 
Sbjct: 17  DMQPGAIITGIVVDID--GDWVTVHAGLKSEGVIP-VEQFYNEQGELTIKVGDEVHVALD 73

Query: 555 GVKSK--RITVTHKKTLVKSKLAILSSY--AEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            V+       ++ +K        +L +   AE   + + +G +      G F    NG++
Sbjct: 74  AVEDGFGETKLSREKAKRAESWIVLEAAFAAEEVVKGVINGKV-----KGGFTVDVNGIR 128

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            F P S + + P  + + +   G+ ++ +++      +++  SRR  L       R +  
Sbjct: 129 AFLPGSLVDVRPVRDTTHLE--GKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALL 186

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
           + ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E
Sbjct: 187 ESLQEGQQVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRIKHPS---EIVNVGDE 240

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGC 777
            D ++L  D E + + L  K        QL  D      +     + V   V N+ + GC
Sbjct: 241 IDVKVLKFDRERNRVSLGLK--------QLGEDPWVAIKARYPEGTRVQARVTNLTDYGC 292

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           F      + G    S+ +D    ++  SK   VG  V   +LD++ E  RI+L +KQ C 
Sbjct: 293 FAELEEGVEGLVHVSE-MDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQ-CK 350

Query: 836 SSTDASF 842
           ++    F
Sbjct: 351 TNPWEDF 357


>gi|430750092|ref|YP_007213000.1| 30S ribosomal protein S1 [Thermobacillus composti KWC4]
 gi|430734057|gb|AGA58002.1| ribosomal protein S1 [Thermobacillus composti KWC4]
          Length = 411

 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 148/357 (41%), Gaps = 43/357 (12%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G +VKG VI ++   A V        + PL  +S  ++       +VG EL  +V+ 
Sbjct: 35  LKKGDIVKGTVIKIEDNQAYVSLGYKYDGVIPLRELSAVQLDNAADAVQVGQELELKVIS 94

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 607
           +         K+ LV SK  +     +A DRL        +    +  + K G  V    
Sbjct: 95  IDD------DKERLVLSKRQV--DAGKAWDRLQEQFEKGEVLEVTVADVVKGGLVVDV-- 144

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPT 659
           GV+GF P S +      E  S Y  GQ ++ +I      + ++ LS        +     
Sbjct: 145 GVRGFIPASMVERHY-VEDFSSYK-GQTLRVKIKELDRETNKVILSAKEVLEEEYEANKR 202

Query: 660 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
           R+ E   ++ G ++ G V  +TP    V +   G   G +    LA   EH    + V+ 
Sbjct: 203 RIMES--LEPGQIIEGTVQRLTPFGAFVDI---GGIDGLVHVSELA--WEHVAHPRDVVS 255

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETG 776
            G +   ++L +D E+  + LS     I +AQ  P +  A   H   +V G V  I+  G
Sbjct: 256 EGQQVKVKVLKVDPEAGKISLS-----IKAAQPGPWELAADKFHNGDIVTGTVKRIVSFG 310

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            FV     + G    S+      A   +    GQ V++ +LD N    RI+LS+K++
Sbjct: 311 AFVEVAPGVEGLVHISQIAHRHIATPHEVLKEGQEVKAKVLDFNPAEKRISLSIKET 367



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 130/282 (46%), Gaps = 53/282 (18%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRIS 1268
             +G+ +   V+SI+ +K+  RLVL       S + VD     D +Q    +G+++   ++
Sbjct: 83   QVGQELELKVISIDDDKE--RLVL-------SKRQVDAGKAWDRLQEQFEKGEVLEVTVA 133

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
             ++ G  GLVV +G  + G +            P S  +    +  S Y +GQ ++ K+ 
Sbjct: 134  DVVKG--GLVVDVG--VRGFI------------PASMVERHYVEDFSSY-KGQTLRVKIK 176

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
            E+ R    T  V LS +  L+     N   +             +E L P  I++G V+ 
Sbjct: 177  ELDRE---TNKVILSAKEVLEEEYEANKRRI-------------MESLEPGQIIEGTVQR 220

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            +T  G F+ +   +D  V +S L+  +V  P      G+ V  +VL V+P + ++ +++K
Sbjct: 221  LTPFGAFVDIG-GIDGLVHVSELAWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIK 279

Query: 1449 TSDSRTASQSEINNLS--NLHVGDIVIGQIKRVESYGLFITI 1488
                  A+Q     L+    H GDIV G +KR+ S+G F+ +
Sbjct: 280  ------AAQPGPWELAADKFHNGDIVTGTVKRIVSFGAFVEV 315



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 115/284 (40%), Gaps = 48/284 (16%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHL-ADHLEHATVMKSVIKPGYEF 724
           +K G +V G V  +  N   V +   GY   G IP   L A  L++A      ++ G E 
Sbjct: 35  LKKGDIVKGTVIKIEDNQAYVSL---GYKYDGVIPLRELSAVQLDNAA---DAVQVGQEL 88

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           + +++ +D++   L+LS +   +++ +             V+   V ++++ G  V    
Sbjct: 89  ELKVISIDDDKERLVLSKRQ--VDAGKAWDRLQEQFEKGEVLEVTVADVVKGGLVVDVGV 146

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
           R  GF P S        D S   Y GQ++R  I +++ ET ++ LS K+           
Sbjct: 147 R--GFIPASMVERHYVEDFSS--YKGQTLRVKIKELDRETNKVILSAKE----------- 191

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
               +LEE+        +  ++ + +E    G +IEG V     FG  V       + G 
Sbjct: 192 ----VLEEE--------YEANKRRIMESLEPGQIIEGTVQRLTPFGAFVDI---GGIDGL 236

Query: 904 ITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKT 940
           +   +LA          V  G  ++  +L V      + LS+K 
Sbjct: 237 VHVSELAWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIKA 280


>gi|258444809|ref|ZP_05693138.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A8115]
 gi|282892973|ref|ZP_06301208.1| 30S ribosomal protein S1 [Staphylococcus aureus A8117]
 gi|443637822|ref|ZP_21121888.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21236]
 gi|257850302|gb|EEV74255.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A8115]
 gi|282764970|gb|EFC05095.1| 30S ribosomal protein S1 [Staphylococcus aureus A8117]
 gi|443404859|gb|ELS63476.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21236]
          Length = 391

 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T   V + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGVFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 47.0 bits (110), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI GKV     FGV 
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIHGKVARLTQFGVF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+    KV R+ +  G+ +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGVFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIHGKVARLTQFGVFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 94/204 (46%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G+ + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIHGKVARLTQF--GVFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|379795837|ref|YP_005325835.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus MSHR1132]
 gi|356872827|emb|CCE59166.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus MSHR1132]
          Length = 391

 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      +    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENESGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGSPGEVLEPGQQVSVKILGIDEENERVSLSIKATL 351



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 168/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKVGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENESGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGSPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     ++S  A   +Y +  D 
Sbjct: 330 SVKILGIDEENERVSLSIKATLPNEDVIESDPATTEAYLDNEDE 373



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 111/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKVGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NES   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENESGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA          +K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 94/204 (46%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ SP +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGSPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V+ ++L ++  ++RV +++K +
Sbjct: 327  QQVSVKILGIDEENERVSLSIKAT 350


>gi|338737387|ref|YP_004674349.1| 30S ribosomal protein S1 [Hyphomicrobium sp. MC1]
 gi|337757950|emb|CCB63773.1| 30S ribosomal protein S1 [Hyphomicrobium sp. MC1]
          Length = 573

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 127/543 (23%), Positives = 212/543 (39%), Gaps = 101/543 (18%)

Query: 437 PAYVTISDVAEEEVRKLEKKYKEGSCVR---VRILGFRHLEGLATGILKASAFEGLVFTH 493
           P  + + D  E  + ++E    E    R    R   +  LE L     K     G++F  
Sbjct: 71  PGDLKVGDTVEVYLERVENALGEAVLSRDKARREESWTRLERLYE---KGEKVTGVIFNK 127

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG------VKALCPLPHMSE-FEIVKPGKKFKVG 546
             VK G  V       D  GA+   PG       V+ + PL H  + F+I+K  ++    
Sbjct: 128 --VKGGFTV-------DLDGAVAFLPGSQVDIRPVRDIGPLMHQQQPFQILKMDRR---- 174

Query: 547 AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
                R   V S+R  +   +   + +  I++  AE     I  G +  I  +G F+   
Sbjct: 175 -----RGNIVVSRRSVLEESRA--EQRTEIVARLAEGQ---IIDGLVKNITDYGAFIDL- 223

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
            G+ G    +++       PS + +VG  VK +I+   P ++RI+L    +      S +
Sbjct: 224 GGIDGLLHVTDMAWRRVNHPSEILNVGDTVKVQIIRINPETQRISLGMKQLQSDPWSSIE 283

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
               +G+ V G V  +       +V  +   +G I       H+   +  K    PG   
Sbjct: 284 SKYPIGAKVKGTVTNIADYGA--FVELEPGVEGLI-------HVSEMSWTKKNTHPGKIV 334

Query: 725 D-------QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI-HP-NSVVHGYVCNIIET 775
                   Q+L +D +   + L  K +     Q+ P D+    HP  SVV G + NI E 
Sbjct: 335 STSQQVEVQVLEVDPQKRRISLGLKQT-----QENPWDSFLTQHPKGSVVEGPIRNITEF 389

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRA--DLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G F+     + G    S  +D Q+   ++ K Y  G +V++ +LDV+    RI+L +KQ 
Sbjct: 390 GLFIGLDNGIDGMVHLSD-LDWQKPGDEVIKDYKKGDNVKAVVLDVDGSKERISLGIKQL 448

Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                DA              M +  K              G  + G V   +D G+ V 
Sbjct: 449 AGDPADA--------------MAKYKK--------------GDAVTGTVTSVSDAGIEVR 480

Query: 894 FEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             + S++  FI    L+    E        G  + AA+L V KA R + +S+K + +   
Sbjct: 481 IAD-SELTSFIKRGDLSRDRSEQRPERFNVGDKVDAAVLSVDKAARRIAVSIKALELAEE 539

Query: 947 REA 949
           ++A
Sbjct: 540 KQA 542



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            +  E +  L+   I+ G VKN+T  G FI L   +D  + +++++   V  P +   +G 
Sbjct: 193  QRTEIVARLAEGQIIDGLVKNITDYGAFIDLG-GIDGLLHVTDMAWRRVNHPSEILNVGD 251

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  +++ + P ++R+ + +K   S   S  E    S   +G  V G +  +  YG F+ 
Sbjct: 252  TVKVQIIRINPETQRISLGMKQLQSDPWSSIE----SKYPIGAKVKGTVTNIADYGAFVE 307

Query: 1488 IE 1489
            +E
Sbjct: 308  LE 309



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 135/614 (21%), Positives = 236/614 (38%), Gaps = 108/614 (17%)

Query: 491  FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI------VKPGKKFK 544
                D+  G VVKGK++ ++   AI+    G+K    +  + EF +      +K G   +
Sbjct: 25   LAKDDLFEGSVVKGKIVGIEKDMAIIDV--GLKMEGRVA-LKEFGVGGKPGDLKVGDTVE 81

Query: 545  VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
            V  E V   LG       ++  K   +     L    E  ++ +T     K++  G F  
Sbjct: 82   VYLERVENALG----EAVLSRDKARREESWTRLERLYEKGEK-VTGVIFNKVK--GGFTV 134

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTR 660
              +G   F P S++ + P  +   + H  Q  +     R   +I  SRR  L       R
Sbjct: 135  DLDGAVAFLPGSQVDIRPVRDIGPLMHQQQPFQILKMDRRRGNIVVSRRSVLEESRAEQR 194

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--KSVI 718
                  +  G ++ G+V  +T     + +       G I      D L H T M  + V 
Sbjct: 195  TEIVARLAEGQIIDGLVKNITDYGAFIDL-------GGI------DGLLHVTDMAWRRVN 241

Query: 719  KPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVH 766
             P    +       Q++ ++ E+  + L  K        QL SD      S     + V 
Sbjct: 242  HPSEILNVGDTVKVQIIRINPETQRISLGMK--------QLQSDPWSSIESKYPIGAKVK 293

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V NI + G FV     + G    S+ +   +     K     Q V   +L+V+ +  R
Sbjct: 294  GTVTNIADYGAFVELEPGVEGLIHVSEMSWTKKNTHPGKIVSTSQQVEVQVLEVDPQKRR 353

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            I+L LKQ+  +  D SF+ +H                            GSV+EG +   
Sbjct: 354  ISLGLKQTQENPWD-SFLTQHPK--------------------------GSVVEGPIRNI 386

Query: 886  NDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLK 939
             +FG+ +  +   D  V+      Q  G  V    + G  ++A +LDV  ++  + L +K
Sbjct: 387  TEFGLFIGLDNGIDGMVHLSDLDWQKPGDEVIKDYKKGDNVKAVVLDVDGSKERISLGIK 446

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
             +       A     A  K +K +A     V  TV ++ +   E  +  S  E    I  
Sbjct: 447  QL-------AGDPADAMAKYKKGDA-----VTGTVTSVSDAGIEVRIADS--ELTSFIKR 492

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKK 1057
              +S   +++ P++ F  G  V A V+++     A R+ + +KA  ++E + + ++    
Sbjct: 493  GDLSRDRSEQRPER-FNVGDKVDAAVLSV--DKAARRIAVSIKALELAEEKQAVAQYGSS 549

Query: 1058 KSSYDVGSLVQAEI 1071
             S   +G + +A I
Sbjct: 550  DSGASLGDIFKAAI 563



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 63/338 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ + G V  + +  A + +   +   L + D A+     PSE+       ++G  V   
Sbjct: 204  GQIIDGLVKNITDYGAFIDLG-GIDGLLHVTDMAWRRVNHPSEI------LNVGDTVKVQ 256

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GL 1277
            ++ IN E + + L ++  Q   SD    I +            +G ++   ++ +   G 
Sbjct: 257  IIRINPETQRISLGMKQLQ---SDPWSSIESKYP---------IGAKVKGTVTNIADYGA 304

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
             V++ P + G +H +E+           + +    P       Q V+ +VLE+    R  
Sbjct: 305  FVELEPGVEGLIHVSEMS----------WTKKNTHPGKIVSTSQQVEVQVLEVDPQKR-- 352

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
                   R SL G+  T  +   + +    K            +V+G ++N+T  G FI 
Sbjct: 353  -------RISL-GLKQTQENPWDSFLTQHPK----------GSVVEGPIRNITEFGLFIG 394

Query: 1398 LSRKLDAKVLLSNLSDGYVESPE--KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            L   +D  V LS+L D      E  K++  G  V   VL V+   +R+ + +K      A
Sbjct: 395  LDNGIDGMVHLSDL-DWQKPGDEVIKDYKKGDNVKAVVLDVDGSKERISLGIKQLAGDPA 453

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
                 + ++    GD V G +  V   G+ + I ++ L
Sbjct: 454  -----DAMAKYKKGDAVTGTVTSVSDAGIEVRIADSEL 486


>gi|293374966|ref|ZP_06621261.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909]
 gi|325843363|ref|ZP_08167946.1| putative ribosomal protein S1 [Turicibacter sp. HGF1]
 gi|292646376|gb|EFF64391.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909]
 gi|325489392|gb|EGC91765.1| putative ribosomal protein S1 [Turicibacter sp. HGF1]
          Length = 559

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 150/350 (42%), Gaps = 32/350 (9%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +S +  G +V GKV+ ++ FGA V+F G ++ L  +  +S   + K      V  E+  +
Sbjct: 194 YSTLAVGDIVTGKVVRLEKFGAFVRF-GALEGLVHISEISHLPVEKVEDALTVNQEVSAK 252

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           V+ V+  +I ++ K  L       +  + E     +  G + ++ + G FV    GV+G 
Sbjct: 253 VIKVEGTKIQLSIKAVLPTPFEQFVQVHHENE---VLEGTVVRLTEFGAFVELAKGVEGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV----K 668
              SEL  D   +   +   GQ V+ RI+       RI LS      +V +D       K
Sbjct: 310 VHLSELSWDHKAKLEEVVSEGQKVQVRIILLDKKHNRIGLSL----KKVEQDPWQTFSHK 365

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-----MKSVIKPGYE 723
           +G ++ G V  +T     + V    Y +G         H   A+      + S++    E
Sbjct: 366 VGDVICGTVTNMTDLGAFIKVAP--YIEGLC-------HFTEASWNPNKKLASLVSVNEE 416

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            + +++ LD +   L LS     + + ++ P +   +    V+ G V ++ + G FV   
Sbjct: 417 VEVKIISLDVKKHRLGLS-----LRAVKENPWNTVTLKVGDVITGKVESMNDRGAFVAIE 471

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             + GF P ++  + +   +     VG+ V   ++    +  ++ LS+++
Sbjct: 472 EDVIGFLPANQITEKRINRVEDVLSVGEVVEVKVMRFEPKQAKLELSIRR 521



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 122/541 (22%), Positives = 207/541 (38%), Gaps = 95/541 (17%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
           +V+G V+ V +    V   G  +    L  ++  ++       KVG  +      V  ++
Sbjct: 31  IVEGVVVRVSNQEVTVDIGGATEGTIYLNELTLDKVESAKDVVKVGDTIKAMAKKVDDEQ 90

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 620
           I ++ +  L   +   L    E  + L   G + +  K G  V    G+  F P + + +
Sbjct: 91  ILLSRRALLEYQRFQDLKVAYEKGETL--EGRVIRTVKGGLIVNI--GMDAFLPTNMVDV 146

Query: 621 DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF------MMKPTRVSEDDLVKLGSLVS 674
           D   +     +VGQ +  RI+   P ++RI +S        +K  R  +   + +G +V+
Sbjct: 147 DFVTDLEQ--YVGQKMLVRIVEFNPRNKRIKVSRKIVVAEQLKVAREDQYSTLAVGDIVT 204

Query: 675 G-VVDVVTPNAVVVYVIAKGYSK----GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 729
           G VV +    A V +   +G         +P E + D L   TV + V           V
Sbjct: 205 GKVVRLEKFGAFVRFGALEGLVHISEISHLPVEKVEDAL---TVNQEVSAK--------V 253

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
           +  E + + LS K  L    +Q      H H N V+ G V  + E G FV     + G  
Sbjct: 254 IKVEGTKIQLSIKAVLPTPFEQFVQ--VH-HENEVLEGTVVRLTEFGAFVELAKGVEGLV 310

Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK------------------ 831
             S+     +A L +    GQ V+  I+ ++ +  RI LSLK                  
Sbjct: 311 HLSELSWDHKAKLEEVVSEGQKVQVRIILLDKKHNRIGLSLKKVEQDPWQTFSHKVGDVI 370

Query: 832 --------------------QSCCSSTDASFMQEHFL---------LEEKIAMLQSSKHN 862
                               +  C  T+AS+     L         +E KI  L   KH 
Sbjct: 371 CGTVTNMTDLGAFIKVAPYIEGLCHFTEASWNPNKKLASLVSVNEEVEVKIISLDVKKHR 430

Query: 863 -GSELKWVE-------GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            G  L+ V+          +G VI GKV   ND G  V+ EE  DV GF+  +Q+    +
Sbjct: 431 LGLSLRAVKENPWNTVTLKVGDVITGKVESMNDRGAFVAIEE--DVIGFLPANQITEKRI 488

Query: 915 ES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 967
                    G V++  ++     +  ++LS++ +  D  RE  +    ++++ + E   D
Sbjct: 489 NRVEDVLSVGEVVEVKVMRFEPKQAKLELSIRRIKEDAEREEFNKYMKEQEQAETETLGD 548

Query: 968 L 968
           L
Sbjct: 549 L 549



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 37/289 (12%)

Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
           S + VGDI    KVVR+++  G  +   +        V IS+++   V K+E        
Sbjct: 195 STLAVGDIV-TGKVVRLEK-FGAFVRFGALE----GLVHISEISHLPVEKVEDALTVNQE 248

Query: 463 VRVRILGFRHLEG----LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
           V  +++    +EG    L+   +  + FE  V  H +     V++G V+ +  FGA V+ 
Sbjct: 249 VSAKVI---KVEGTKIQLSIKAVLPTPFEQFVQVHHE---NEVLEGTVVRLTEFGAFVEL 302

Query: 519 PGGVKALCPLPHMSEF---------EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTL 569
             GV+ L    H+SE          E+V  G+K +V   L    L  K  RI ++ KK  
Sbjct: 303 AKGVEGLV---HLSELSWDHKAKLEEVVSEGQKVQVRIIL----LDKKHNRIGLSLKKV- 354

Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
              +     +++     +I  G +T +   G F++    ++G    +E   +P  + +S+
Sbjct: 355 ---EQDPWQTFSHKVGDVIC-GTVTNMTDLGAFIKVAPYIEGLCHFTEASWNPNKKLASL 410

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVD 678
             V + V+ +I+S      R+ LS             +K+G +++G V+
Sbjct: 411 VSVNEEVEVKIISLDVKKHRLGLSLRAVKENPWNTVTLKVGDVITGKVE 459



 Score = 44.3 bits (103), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 73/397 (18%), Positives = 172/397 (43%), Gaps = 68/397 (17%)

Query: 1054 RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 1113
            R  + S+  VG +V  ++  ++     ++FG    G +HI+E++      VE+  +   +
Sbjct: 190  REDQYSTLAVGDIVTGKVVRLEKFGAFVRFG-ALEGLVHISEISHLPVEKVEDALT---V 245

Query: 1114 GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1173
             Q V+A++I              +LSIK  + T  E   ++  E       + + G V +
Sbjct: 246  NQEVSAKVIKVEGTK-------IQLSIKAVLPTPFEQFVQVHHE------NEVLEGTVVR 292

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYE-PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            +    A + +++ ++  + + + +++  ++L+E       G+ V   ++ ++K+   + L
Sbjct: 293  LTEFGAFVELAKGVEGLVHLSELSWDHKAKLEEVVSE---GQKVQVRIILLDKKHNRIGL 349

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHE-GDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
             L+            +  D  QTF H+ GD++ G ++  ++ +G  + ++ P++ G  HF
Sbjct: 350  SLKK-----------VEQDPWQTFSHKVGDVICGTVTN-MTDLGAFI-KVAPYIEGLCHF 396

Query: 1292 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1351
            TE          S     +   L   +E   VK   L++ +   G     LSLR+  +  
Sbjct: 397  TE---------ASWNPNKKLASLVSVNEEVEVKIISLDVKKHRLG-----LSLRAVKENP 442

Query: 1352 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1411
             +T +                   L    ++ G V+++  +G F+ +   +   +  + +
Sbjct: 443  WNTVT-------------------LKVGDVITGKVESMNDRGAFVAIEEDVIGFLPANQI 483

Query: 1412 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            ++  +   E    +G++V  +V+  EP   ++E++++
Sbjct: 484  TEKRINRVEDVLSVGEVVEVKVMRFEPKQAKLELSIR 520



 Score = 40.0 bits (92), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 42/241 (17%)

Query: 1248 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
            ++ ++  + +  GDIV G++ ++     G  V+ G  L G VH +E+ ++ V        
Sbjct: 188  VAREDQYSTLAVGDIVTGKVVRLEKF--GAFVRFGA-LEGLVHISEISHLPV-------- 236

Query: 1308 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1367
            E   D L+   E   V  KV+++  T      ++LS+++ L                TP 
Sbjct: 237  EKVEDALTVNQE---VSAKVIKVEGT-----KIQLSIKAVLP---------------TPF 273

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            +   ++     N +++G V  +T  G F+ L++ ++  V LS LS  +    E+    G+
Sbjct: 274  EQFVQVH--HENEVLEGTVVRLTEFGAFVELAKGVEGLVHLSELSWDHKAKLEEVVSEGQ 331

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  R++ ++    R+ ++LK        Q      S+  VGD++ G +  +   G FI 
Sbjct: 332  KVQVRIILLDKKHNRIGLSLKK-----VEQDPWQTFSH-KVGDVICGTVTNMTDLGAFIK 385

Query: 1488 I 1488
            +
Sbjct: 386  V 386


>gi|148358952|ref|YP_001250159.1| 30S ribosomal protein S1 [Legionella pneumophila str. Corby]
 gi|296107001|ref|YP_003618701.1| 30S ribosomal protein S1 [Legionella pneumophila 2300/99 Alcoy]
 gi|148280725|gb|ABQ54813.1| 30S ribosomal protein S1 [Legionella pneumophila str. Corby]
 gi|295648902|gb|ADG24749.1| small subunit ribosomal protein S1 [Legionella pneumophila 2300/99
            Alcoy]
          Length = 558

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 156/371 (42%), Gaps = 62/371 (16%)

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            +H    +HG V N+ + G F+  LG + G    +     +    S+   VGQ V+  +L 
Sbjct: 189  LHDGQELHGIVKNLTDYGAFID-LGGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLS 247

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
             +SE  R++L +KQ                             N   +  VE + IG  +
Sbjct: 248  FDSERNRVSLGMKQLG---------------------------NDPWVDLVERYPIGKRL 280

Query: 879  EGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
            +GKV    D+G  V  EE      H     +   +      V  G V+   +L++ +  R
Sbjct: 281  QGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEERR 340

Query: 933  LVDLSLKTVFIDRFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSL 990
             + L +K    + +++ A+++ + +K K K  +  D G+   ++  ++ +V  + +  ++
Sbjct: 341  RISLGMKQCVGNPWQQFASTHNKGEKVKGKIRSITDFGIFIGLDGDIDGLVHLSDISWTI 400

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
            P      G  +V          KQF  GQ + A ++A+       R+ L LK +      
Sbjct: 401  P------GEEAV----------KQFKKGQDLEAVILAIDPERE--RISLGLKQLE----- 437

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 1110
                A    +Y  GS+V+  +T ++P  + +       G I ++E++D++   V++  + 
Sbjct: 438  GDSFASFAETYTKGSIVKGTVTAVEPKTVTVALAEDVSGTIRVSELSDER---VDDATTI 494

Query: 1111 FKIGQTVTARI 1121
             K+G  V A+I
Sbjct: 495  VKVGDEVEAKI 505



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 143/380 (37%), Gaps = 42/380 (11%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  + G V  +  +GA +   GG+  L  +  +S   +  P +   VG ++  +VL   S
Sbjct: 192 GQELHGIVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFDS 250

Query: 559 KRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +R  V+   K L       L        RL   G +T I  +GCFV    GV+G    SE
Sbjct: 251 ERNRVSLGMKQLGNDPWVDLVERYPIGKRL--QGKVTNITDYGCFVEIEEGVEGLVHMSE 308

Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLV 673
           +   +    PS +  +G VV   ++      RRI+L        P +       K G  V
Sbjct: 309 MDWTNKNVHPSKVVSLGDVVDVMVLEIDEERRRISLGMKQCVGNPWQQFASTHNK-GEKV 367

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKG---------TIPTEHLADHLEHATVMKSVIKPGYEF 724
            G +  +T     +++   G   G         TIP E      +    +++VI      
Sbjct: 368 KGKIRSITDFG--IFIGLDGDIDGLVHLSDISWTIPGEEAVKQFKKGQDLEAVI------ 419

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              L +D E   + L  K           S A      S+V G V  +      V     
Sbjct: 420 ---LAIDPERERISLGLKQL---EGDSFASFAETYTKGSIVKGTVTAVEPKTVTVALAED 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC--------- 835
           ++G    S+  D +  D +    VG  V + I +++ +   I+LS+K             
Sbjct: 474 VSGTIRVSELSDERVDDATTIVKVGDEVEAKITNIDRKNRTISLSVKAKDAQDEADAIKK 533

Query: 836 -SSTDASFMQEHFLLEEKIA 854
            S T+A+      LL+EK+A
Sbjct: 534 YSRTEAASTTLGDLLKEKMA 553



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L     + G VKN+T  G FI L   +D  + ++++S   V+ P +   +G+ V  +
Sbjct: 186  LESLHDGQELHGIVKNLTDYGAFIDLG-GIDGLLHITDISWKRVKHPSEVLSVGQDVKVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VLS +    RV + +K    +  +   ++ +    +G  + G++  +  YG F+ IE
Sbjct: 245  VLSFDSERNRVSLGMK----QLGNDPWVDLVERYPIGKRLQGKVTNITDYGCFVEIE 297


>gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
 gi|56909882|dbj|BAD64409.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
          Length = 384

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 153/332 (46%), Gaps = 59/332 (17%)

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            S+G  VTG V KV+++ A + +        F +D     SEL       H+ KA    VL
Sbjct: 16   SVGDIVTGKVTKVEDKQAFVDVG-------FKVDGIVPISELS----SLHVEKA--SDVL 62

Query: 1222 SINKEKKLLRLVLRPFQDG---ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1276
            S++ E   L L +   +D    +S K V      + ++    +G+++   +++++ G  G
Sbjct: 63   SVDDE---LELKVTKVEDDELILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKG--G 117

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336
            LVV +G  + G +            P S  +    +  S Y +G+ ++ KV EI +    
Sbjct: 118  LVVDVG--VRGFI------------PASLVERHYVEDFSDY-KGKPLRLKVTEIDKDNNK 162

Query: 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1396
                 LS R+ LD            +++   K +  +  LS   +V+G V+ +TS G F+
Sbjct: 163  LI---LSQRAVLD-----------AEIEEKKKQV--LHSLSTGDVVEGKVQRLTSFGAFV 206

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
             +   +D  V +S ++   VE P      G+ V  +VLSV+P S+RV +++K      A 
Sbjct: 207  DVG-GVDGLVHISQIAHERVEHPSDVLSEGQEVRVKVLSVDPDSERVSLSIK---EMLAG 262

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              E N  S    GDIV G +KR+ S+G F+ I
Sbjct: 263  PWE-NIESKFSAGDIVTGTVKRLVSFGAFVEI 293



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G VV+GKV  + SFGA V   GGV  L  +  ++   +  P      G E+  +VL V  
Sbjct: 189 GDVVEGKVQRLTSFGAFVDV-GGVDGLVHISQIAHERVEHPSDVLSEGQEVRVKVLSVDP 247

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            S+R++++ K+ L      I S ++ A D  I  G + ++   G FV    GV+G    S
Sbjct: 248 DSERVSLSIKEMLAGPWENIESKFS-AGD--IVTGTVKRLVSFGAFVEIAPGVEGLVHIS 304

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++       P  +   GQ V+ +++    A RR++LS 
Sbjct: 305 QISKRHIGTPQEVLEEGQQVQAKVLEVSEADRRVSLSI 342



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 151/403 (37%), Gaps = 91/403 (22%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G +TK+E    FV     V G  P SEL         S  HV +     ++S     
Sbjct: 20  IVTGKVTKVEDKQAFVDVGFKVDGIVPISEL---------SSLHVEKA--SDVLS----- 63

Query: 648 RRINLSFMMKPTRVSEDDLV-------------------KLGSLVSGVVDVVTPNAVVVY 688
             ++    +K T+V +D+L+                   + G ++   V  V    +VV 
Sbjct: 64  --VDDELELKVTKVEDDELILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKGGLVVD 121

Query: 689 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS 748
           V  +G+   ++   H  +           +K       +  +D +++ L+LS +  L   
Sbjct: 122 VGVRGFIPASLVERHYVEDFSDYKGKPLRLK-------VTEIDKDNNKLILSQRAVLDAE 174

Query: 749 AQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
            ++      H +    VV G V  +   G FV  +G + G    S+    +    S    
Sbjct: 175 IEEKKKQVLHSLSTGDVVEGKVQRLTSFGAFVD-VGGVDGLVHISQIAHERVEHPSDVLS 233

Query: 808 VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
            GQ VR  +L V+ ++ R++LS+K+      +         +E K               
Sbjct: 234 EGQEVRVKVLSVDPDSERVSLSIKEMLAGPWEN--------IESK--------------- 270

Query: 868 WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-------ATVESGSVI 920
               F  G ++ G V     FG  V       V G +   Q++          +E G  +
Sbjct: 271 ----FSAGDIVTGTVKRLVSFGAFVEI--APGVEGLVHISQISKRHIGTPQEVLEEGQQV 324

Query: 921 QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKRE 963
           QA +L+V++A+R V LS+        REA S  Q +K+ R  E
Sbjct: 325 QAKVLEVSEADRRVSLSI--------REA-SEEQERKETRAYE 358



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 24/135 (17%)

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G+ V   VLS++ + + + L ++    G          +N+++    GDIV G + +++S
Sbjct: 235  GQEVRVKVLSVDPDSERVSLSIKEMLAG--------PWENIESKFSAGDIVTGTVKRLVS 286

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
               G  V+I P + G VH +++    +             P    +EGQ V+ KVLE+S 
Sbjct: 287  F--GAFVEIAPGVEGLVHISQISKRHIG-----------TPQEVLEEGQQVQAKVLEVSE 333

Query: 1333 TVRGTFHVELSLRSS 1347
              R    V LS+R +
Sbjct: 334  ADR---RVSLSIREA 345


>gi|258422493|ref|ZP_05685401.1| ribosomal protein S1 [Staphylococcus aureus A9635]
 gi|417890095|ref|ZP_12534174.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21200]
 gi|418307208|ref|ZP_12918935.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21194]
 gi|418558877|ref|ZP_13123424.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21252]
 gi|418889293|ref|ZP_13443426.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1524]
 gi|418994145|ref|ZP_13541780.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG290]
 gi|257847250|gb|EEV71256.1| ribosomal protein S1 [Staphylococcus aureus A9635]
 gi|341855788|gb|EGS96632.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21200]
 gi|365245888|gb|EHM86490.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21194]
 gi|371976227|gb|EHO93517.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21252]
 gi|377743942|gb|EHT67920.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG290]
 gi|377752801|gb|EHT76719.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1524]
          Length = 391

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIASGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 169/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIASGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 41.2 bits (95), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 95/204 (46%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTP---- 233

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
                 + +     GQ VK K+  I R    T  + LS++ +L                TP
Sbjct: 234  -----EEVVSI--GQDVKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIASGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|70726436|ref|YP_253350.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
 gi|84029458|sp|Q4L6I1.1|RS1_STAHJ RecName: Full=30S ribosomal protein S1
 gi|68447160|dbj|BAE04744.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
          Length = 392

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 26/261 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           ++KV  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E     + KAS  E L         G V+KGKV  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENDVKKASLLESL-------NAGDVIKGKVARLTNFGAFVDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P     VG E+  +V  V+  ++RI+++ K TL     +I   + E 
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV    GVQG    SE+  +    P      GQ V  +I+  
Sbjct: 280 D---VIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSFMMKPTRVSED 664
              + RI+LS  +K T   ED
Sbjct: 337 DEENERISLS--IKATLPKED 355



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 150/367 (40%), Gaps = 33/367 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    I    +T++ K G  V    G
Sbjct: 71  VTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 ASLLESLNAGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E D ++  ++ ++  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTPFESI---KGQFHEDDVIEGKVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-----KQSC 834
                + G    S+          +    GQ V   IL ++ E  RI+LS+     K+  
Sbjct: 297 EIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKEDV 356

Query: 835 CSSTDAS 841
             S DA+
Sbjct: 357 VESDDAT 363



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 161/393 (40%), Gaps = 80/393 (20%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+    EN    VK G  ++  V 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAYVT 72

Query: 285 -----------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL----L 319
                            R ++  +   YL    D    +   VT+ +KG + +D+     
Sbjct: 73  KIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDVGQRGF 132

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           VP  ++ST           +   + F G      ++   P  N             R++ 
Sbjct: 133 VPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVIL 170

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
              + +AV    N   +   +    +  GD+  + KV R+    G  +DI          
Sbjct: 171 ---SRKAVEQAEND--VKKASLLESLNAGDVI-KGKVARL-TNFGAFVDIGGVD----GL 219

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL--VFTHS 494
           V +S+++ E V   E     G  V V++    +  E ++  I     + FE +   F   
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           DV     ++GKV+ + +FGA V+   GV+ L  +  ++   I  PG+K + G ++  ++L
Sbjct: 280 DV-----IEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKIL 334

Query: 555 GV--KSKRITVTHKKTL-----VKSKLAILSSY 580
           G+  +++RI+++ K TL     V+S  A   SY
Sbjct: 335 GIDEENERISLSIKATLPKEDVVESDDATTQSY 367



 Score = 47.8 bits (112), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 188  LESLNAGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVDVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  ++R+ +++K  D+       I      H  D++ G++ R+ ++G F+ I
Sbjct: 247  VKSVEKDAERISLSIK--DTLPTPFESIK--GQFHEDDVIEGKVVRLANFGAFVEI 298



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 55/290 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKQGDEIEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +    +D E+     S  Y L  S +QL ++ S+      +  + ++   V  +++ G 
Sbjct: 70  YVTKIEVDEEND----SGVYIL--SKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D           +K ++L+S                G VI+GKV    +FG  V     
Sbjct: 180 NDV----------KKASLLES-------------LNAGDVIKGKVARLTNFGAFVDI--- 213

Query: 898 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 214 GGVDGLVHVSELSHEHVDSPE-------DVVSVGQEVDVKVKSVEKDAER 256


>gi|357635975|ref|ZP_09133850.1| 30S ribosomal protein S1 [Streptococcus macacae NCTC 11558]
 gi|357584429|gb|EHJ51632.1| 30S ribosomal protein S1 [Streptococcus macacae NCTC 11558]
          Length = 399

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 157/363 (43%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +V+ VDS  A +   G GV+A+  L  ++        ++VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDSEQANLVIEGTGVEAVLTLRELTNDRNADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLIGREGEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  G++GF P S +  D     ++   VGQ    +I    PA  R  LS    
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQEFDAKIKEVDPAENRFILSRREV 175

Query: 658 PTRVSEDDL------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
               + +        + +G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEEAAAEARKEVFSKLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHVTELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E   + LS K +        P D     +    VV G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVVEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V+  +LD+N+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVKVKVLDINTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 39/226 (17%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SKLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHVTELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEEGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           V+EGKV    DFG  V  E    + G +   Q++   VE+       G  ++  +LD+  
Sbjct: 281 VVEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVKVKVLDINT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN--RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +     +E N+   RQ++ ++ KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALEERPAQEENNGEKRQSRPRRPKRQEKRDYELPET 384



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHVTELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VVEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ VK +++    A  R++LS      R ++++
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVKVKVLDINTADERVSLSIKALEERPAQEE 358



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHVTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +V+G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL +   
Sbjct: 280  DVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVKVKVLDINTA 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
             +RV +++K  + R A +
Sbjct: 340  DERVSLSIKALEERPAQE 357



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+++   
Sbjct: 196  IVTGTVARLTSFGAFIDLG-GVDGLVHVTELSHERNVSPKSVVTVGEEIQVKVLAIDEEE 254

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD+V G++KR+  +G F+ +
Sbjct: 255  GRVSLSLKATTPGPWDGVE----QKLAAGDVVEGKVKRLTDFGAFVEV 298


>gi|404495726|ref|YP_006719832.1| 30S ribosomal protein S1 [Geobacter metallireducens GS-15]
 gi|418066372|ref|ZP_12703736.1| ribosomal protein S1 [Geobacter metallireducens RCH3]
 gi|78193342|gb|ABB31109.1| ribosomal protein S1 [Geobacter metallireducens GS-15]
 gi|373560633|gb|EHP86890.1| ribosomal protein S1 [Geobacter metallireducens RCH3]
          Length = 586

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 161/370 (43%), Gaps = 35/370 (9%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T + +  G V +G V  +  +GA V   GGV  L  +  MS   +  P +  K G +L  
Sbjct: 210 TLATLAEGQVREGVVKNITDYGAFVDI-GGVDGLLHVTDMSWGRLGHPSEILKPGDKLNV 268

Query: 552 RVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           +VL    ++  I++  K+      +++   Y +  DR+   G +  +  +G F+   +GV
Sbjct: 269 KVLKYDQEKGKISLGLKQVTPDPWVSVEQKYNQG-DRV--KGKVVSLTDYGAFIALEDGV 325

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----D 664
           +G    SE+        PS +  VG  V+  ++     +RRI+L   +K  +V+     +
Sbjct: 326 EGLVHVSEMSWTRRLRHPSEILTVGDEVETVVLGVDMGNRRISLG--LKQVQVNPWTQLE 383

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
           +   +G+ + G +  +T   V +     G  +G     H++D     +  K +  PG  F
Sbjct: 384 EKYPVGTKLEGQIKSITDFGVFI-----GIEEGIDGLVHVSD----ISWTKRIKHPGEVF 434

Query: 725 DQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            +       +L +D E+  L L  K  L++   ++P       P + VHG V ++ + G 
Sbjct: 435 TKGQTVQAVVLNIDPENERLSLGIKQLLLDPWSEIPV---KYRPGTRVHGKVTSVTDFGV 491

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           F+     + G    S+    + A   +   VG  + + +L V+    +I LS+K    ++
Sbjct: 492 FLEIEEGIEGLIHVSELSREKVASPKEFTNVGDELDAVVLSVDESEKKIALSIKSLQMAA 551

Query: 838 TDA---SFMQ 844
             A   S+MQ
Sbjct: 552 EKAEIESYMQ 561



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 105/484 (21%), Positives = 189/484 (39%), Gaps = 82/484 (16%)

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 661
            GVQ F P S++ L PG       ++G   + +++       +I  SRR+ +    + +R 
Sbjct: 151  GVQAFLPASQVDLRPGGNLDK--YIGTTDRFKVLKLNKKRGNIVLSRRVLMEEERESSRK 208

Query: 662  SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSV 717
                 +  G +  GVV  +T     V +   G   G +   H+ D     L H +    +
Sbjct: 209  ETLATLAEGQVREGVVKNITDYGAFVDI---GGVDGLL---HVTDMSWGRLGHPS---EI 259

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
            +KPG + + ++L  D E   + L  K     +     S     +    V G V ++ + G
Sbjct: 260  LKPGDKLNVKVLKYDQEKGKISLGLKQV---TPDPWVSVEQKYNQGDRVKGKVVSLTDYG 316

Query: 777  CFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
             F+     + G    S+    +R    S+   VG  V + +L V+    RI+L LKQ   
Sbjct: 317  AFIALEDGVEGLVHVSEMSWTRRLRHPSEILTVGDEVETVVLGVDMGNRRISLGLKQVQV 376

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
            +     + Q    LEEK                   + +G+ +EG++    DFGV +  E
Sbjct: 377  N----PWTQ----LEEK-------------------YPVGTKLEGQIKSITDFGVFIGIE 409

Query: 896  E------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
            E      H     +    +  G     G  +QA +L++      + L +K + +D + E 
Sbjct: 410  EGIDGLVHVSDISWTKRIKHPGEVFTKGQTVQAVVLNIDPENERLSLGIKQLLLDPWSEI 469

Query: 950  NSN-RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
                R   +   K  +  D GV   +   +E                  G   VS+ + +
Sbjct: 470  PVKYRPGTRVHGKVTSVTDFGVFLEIEEGIE------------------GLIHVSELSRE 511

Query: 1009 KFPQ-KQFLN-GQSVIATVMALPSSSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVG 1064
            K    K+F N G  + A V+++  S     L +  L  A  + E  S  +A+ +++ ++G
Sbjct: 512  KVASPKEFTNVGDELDAVVLSVDESEKKIALSIKSLQMAAEKAEIESYMQAQGEATSNLG 571

Query: 1065 SLVQ 1068
             L++
Sbjct: 572  ELLK 575



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 147/376 (39%), Gaps = 41/376 (10%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL-----PRNNLAENSGIDVKPGLLL 280
           +L T+ EG V    VK+I D+G  +  G     G L         L   S I +KPG  L
Sbjct: 210 TLATLAEGQVREGVVKNITDYGAFVDIG--GVDGLLHVTDMSWGRLGHPSEI-LKPGDKL 266

Query: 281 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
              V   D+ +  + L     T    V+ + K         G  V  +V S+ + G  ++
Sbjct: 267 NVKVLKYDQEKGKISLGLKQVTPDPWVSVEQK------YNQGDRVKGKVVSLTDYGAFIA 320

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL 395
                 G V +  +  T    +         +V   +L VD  +R + L L     NP+ 
Sbjct: 321 LEDGVEGLVHVSEMSWTRRLRHPSEILTVGDEVETVVLGVDMGNRRISLGLKQVQVNPWT 380

Query: 396 LHNRAPPSHVK----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEV 450
                 P   K    +  I D    + ++ G+                V +SD++  + +
Sbjct: 381 QLEEKYPVGTKLEGQIKSITDFGVFIGIEEGI-------------DGLVHVSDISWTKRI 427

Query: 451 RKLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
           +   + + +G  V+  +L      E L+ GI K    +         +PG  V GKV +V
Sbjct: 428 KHPGEVFTKGQTVQAVVLNIDPENERLSLGI-KQLLLDPWSEIPVKYRPGTRVHGKVTSV 486

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
             FG  ++   G++ L  +  +S  ++  P +   VG EL   VL V    K+I ++ K 
Sbjct: 487 TDFGVFLEIEEGIEGLIHVSELSREKVASPKEFTNVGDELDAVVLSVDESEKKIALSIKS 546

Query: 568 TLVKSKLAILSSYAEA 583
             + ++ A + SY +A
Sbjct: 547 LQMAAEKAEIESYMQA 562



 Score = 40.0 bits (92), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 13/113 (11%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G V ++T  G FI L   ++  V +S +S    +  P +   +G  V   VL V+  +
Sbjct: 305  VKGKVVSLTDYGAFIALEDGVEGLVHVSEMSWTRRLRHPSEILTVGDEVETVVLGVDMGN 364

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFITIE 1489
            +R+ + LK        Q ++N  + L     VG  + GQIK +  +G+FI IE
Sbjct: 365  RRISLGLK--------QVQVNPWTQLEEKYPVGTKLEGQIKSITDFGVFIGIE 409


>gi|228476148|ref|ZP_04060856.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
 gi|228269971|gb|EEK11451.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
          Length = 393

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V GKV  V+    +V   G     + P+  +S   I  P +    G E+   
Sbjct: 12  NDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAY 71

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 72  VTKIEIDEENESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDV--G 129

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 130 QRGFVPASLISTD-FIEDFSVFE-GQTIRLKVEELDPENNRVILS--RKAVEQAENDVKK 185

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 186 ASLLDSLNEGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVQSPEDVVSV 240

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E D ++  ++ ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 241 GQEVDVKVKSVEKDTERISLSIKDTLPTPFENI---KGKFHENDVIEGKVIRLANFGAFV 297

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+         S+    GQ V   IL ++ E  RI+LS+K + 
Sbjct: 298 EIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATL 352



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 189  LDSLNEGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVQSPEDVVSVGQEVDVK 247

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  ++R+ +++K     T      N     H  D++ G++ R+ ++G F+ I
Sbjct: 248  VKSVEKDTERISLSIKD----TLPTPFENIKGKFHENDVIEGKVIRLANFGAFVEI 299



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 116/290 (40%), Gaps = 55/290 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV++    Y+ G IP   L+ H  H      +I  G E + 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYN-GIIPISQLSTH--HIENPSEIISEGDEIEA 70

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +    +D E+     S  Y L  S +QL ++ S+      +  + V+   V  +++ G 
Sbjct: 71  YVTKIEIDEENE----SGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGL 124

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 125 VVDVGQR--GFVPASLISTDFIEDFS--VFEGQTIRLKVEELDPENNRVILSRKAVEQAE 180

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D           +K ++L S                G VI+GKV    +FG  V     
Sbjct: 181 NDV----------KKASLLDSLNE-------------GDVIKGKVARLTNFGAFVDI--- 214

Query: 898 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 215 GGVDGLVHVSELSHEHVQSPE-------DVVSVGQEVDVKVKSVEKDTER 257



 Score = 44.3 bits (103), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 162/393 (41%), Gaps = 80/393 (20%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ +ED   ++H     + G +P + L+    EN    +  G  ++  V 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAYVT 73

Query: 285 -----------------RSIDRTRKVVYLSS--DPDTVSKC-VTKDLKG-ISIDL----L 319
                            R ++  +   YL    D D V +  VT+ +KG + +D+     
Sbjct: 74  KIEIDEENESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDVGQRGF 133

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           VP  ++ST           +   + F G      ++   P  N             R++ 
Sbjct: 134 VPASLISTD---------FIEDFSVFEGQTIRLKVEELDPENN-------------RVIL 171

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
              + +AV    N   +   +    +  GD+  + KV R+    G  +DI          
Sbjct: 172 ---SRKAVEQAEND--VKKASLLDSLNEGDVI-KGKVARL-TNFGAFVDIGGVD----GL 220

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLV--FTHS 494
           V +S+++ E V+  E     G  V V++    +  E ++  I     + FE +   F  +
Sbjct: 221 VHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDTERISLSIKDTLPTPFENIKGKFHEN 280

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           DV     ++GKVI + +FGA V+   GV+ L  +  ++   I  P +  + G ++  ++L
Sbjct: 281 DV-----IEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKIL 335

Query: 555 GV--KSKRITVTHKKTL-----VKSKLAILSSY 580
           G+  +++RI+++ K TL     ++S  A   SY
Sbjct: 336 GIDEENERISLSIKATLPNEDVIESDEATTQSY 368


>gi|378777286|ref|YP_005185723.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
            ATCC 43290]
 gi|52628762|gb|AAU27503.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
            str. Philadelphia 1]
 gi|364508100|gb|AEW51624.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
            ATCC 43290]
          Length = 579

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 156/371 (42%), Gaps = 62/371 (16%)

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            +H    +HG V N+ + G F+  LG + G    +     +    S+   VGQ V+  +L 
Sbjct: 210  LHDGQELHGIVKNLTDYGAFID-LGGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLS 268

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
             +SE  R++L +KQ                             N   +  VE + IG  +
Sbjct: 269  FDSERNRVSLGMKQLG---------------------------NDPWVDLVERYPIGKRL 301

Query: 879  EGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
            +GKV    D+G  V  EE      H     +   +      V  G V+   +L++ +  R
Sbjct: 302  QGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEERR 361

Query: 933  LVDLSLKTVFIDRFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSL 990
             + L +K    + +++ A+++ + +K K K  +  D G+   ++  ++ +V  + +  ++
Sbjct: 362  RISLGMKQCVGNPWQQFASTHNKGEKVKGKIRSITDFGIFIGLDGDIDGLVHLSDISWTV 421

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
            P      G  +V          KQF  GQ + A ++A+       R+ L LK +      
Sbjct: 422  P------GEEAV----------KQFKKGQELEAVILAIDPERE--RISLGLKQLE----- 458

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 1110
                A    +Y  GS+V+  +T ++P  + +       G I ++E++D++   V++  + 
Sbjct: 459  GDSFASFAETYTKGSIVKGTVTAVEPKTVTVALAEDVSGTIRVSELSDER---VDDATTI 515

Query: 1111 FKIGQTVTARI 1121
             K+G  V A+I
Sbjct: 516  VKVGDEVEAKI 526



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 146/374 (39%), Gaps = 30/374 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  + G V  +  +GA +   GG+  L  +  +S   +  P +   VG ++  +VL   S
Sbjct: 213 GQELHGIVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFDS 271

Query: 559 KRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +R  V+   K L       L        RL   G +T I  +GCFV    GV+G    SE
Sbjct: 272 ERNRVSLGMKQLGNDPWVDLVERYPIGKRL--QGKVTNITDYGCFVEIEEGVEGLVHMSE 329

Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLV 673
           +   +    PS +  +G VV   ++      RRI+L        P +       K G  V
Sbjct: 330 MDWTNKNVHPSKVVSLGDVVDVMVLEIDEERRRISLGMKQCVGNPWQQFASTHNK-GEKV 388

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-LLVL 730
            G +  +T     +++   G   G +   HL+D        ++V   K G E +  +L +
Sbjct: 389 KGKIRSITDFG--IFIGLDGDIDGLV---HLSDISWTVPGEEAVKQFKKGQELEAVILAI 443

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
           D E   + L  K           S A      S+V G V  +      V     ++G   
Sbjct: 444 DPERERISLGLKQL---EGDSFASFAETYTKGSIVKGTVTAVEPKTVTVALAEDVSGTIR 500

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC----------SSTDA 840
            S+  D +  D +    VG  V + I +++ +   I+LS+K              S T+A
Sbjct: 501 VSELSDERVDDATTIVKVGDEVEAKITNIDRKNRTISLSVKAKDAQDEADAIKKYSRTEA 560

Query: 841 SFMQEHFLLEEKIA 854
           +      LL+EK+A
Sbjct: 561 ASTTLGDLLKEKMA 574



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L     + G VKN+T  G FI L   +D  + ++++S   V+ P +   +G+ V  +
Sbjct: 207  LESLHDGQELHGIVKNLTDYGAFIDLG-GIDGLLHITDISWKRVKHPSEVLSVGQDVKVK 265

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VLS +    RV + +K    +  +   ++ +    +G  + G++  +  YG F+ IE
Sbjct: 266  VLSFDSERNRVSLGMK----QLGNDPWVDLVERYPIGKRLQGKVTNITDYGCFVEIE 318


>gi|73662579|ref|YP_301360.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|418576137|ref|ZP_13140283.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
           saprophyticus KACC 16562]
 gi|84029459|sp|Q49XT0.1|RS1_STAS1 RecName: Full=30S ribosomal protein S1
 gi|72495094|dbj|BAE18415.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|379325199|gb|EHY92331.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
           saprophyticus KACC 16562]
          Length = 393

 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 22/250 (8%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D+      P++ +ST      SD  E +V KL+ +  + +  RV 
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDF-EGQVLKLKVEELDPANNRV- 168

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
           IL  + +E L     K    E L         G V++GKV  + +FGA V   GGV  L 
Sbjct: 169 ILSRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLV 220

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 584
            +  +S   +  P     +G  +  ++  V   S+RI+++ K TL     +I   + E  
Sbjct: 221 HVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGD 280

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
              +  G + ++   G FV    GVQG    SE+       PS     GQVV  +++   
Sbjct: 281 ---VIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVD 337

Query: 645 PASRRINLSF 654
             + RI+LS 
Sbjct: 338 VENERISLSI 347



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 156/386 (40%), Gaps = 37/386 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  ++    IV   G     + P+  +S   I  P    KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L K +L    SY    ++L         +T++ K G  V    G
Sbjct: 71  VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 663
            +GF P S +  D   E  S +  GQV+K ++    PA+ R+ LS   K     E     
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQVLKLKVEELDPANNRVILS--RKAVEALENAEKK 184

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D+L++    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G   + ++  +D +S  + LS K +L +  + +  +    +   V+ G V  +   G FV
Sbjct: 240 GETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGE---FNEGDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                + G    S+         S+    GQ V   +L V+ E  RI+LS+K +  +   
Sbjct: 297 EIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN- 355

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSE 865
                   ++E      QS   NGS+
Sbjct: 356 --------VIESDSETTQSYLDNGSD 373



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 21/170 (12%)

Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1378
            EGQ +K KV E+         V LS R +++ + +    D            E +E L+ 
Sbjct: 150  EGQVLKLKVEELDP---ANNRVILS-RKAVEALENAEKKD------------ELLESLNE 193

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
              +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    IG+ V  ++ SV+ 
Sbjct: 194  GDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDK 252

Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             S+R+ +++K  D+  +    I      + GD++ G + R+ ++G F+ I
Sbjct: 253  DSERISLSIK--DTLPSPFESIK--GEFNEGDVIEGTVVRLANFGAFVEI 298



 Score = 47.4 bits (111), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
           GD+  + KV R+    G  +DI          V +S+++ E V+  E     G  V V+I
Sbjct: 194 GDVI-EGKVARL-TNFGAFVDIGGVD----GLVHVSELSHEHVKSPEDVVSIGETVNVKI 247

Query: 468 LGF-RHLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
               +  E ++  I     S FE +     +   G V++G V+ + +FGA V+   GV+ 
Sbjct: 248 KSVDKDSERISLSIKDTLPSPFESI---KGEFNEGDVIEGTVVRLANFGAFVEIKPGVQG 304

Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAE 582
           L  +  +S   I  P +  + G  +  +VLG  V+++RI+++ K TL      ++ S +E
Sbjct: 305 LVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN--VIESDSE 362

Query: 583 ATDRLITHG 591
            T   + +G
Sbjct: 363 TTQSYLDNG 371


>gi|385812293|ref|YP_005848684.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
 gi|299783190|gb|ADJ41188.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
          Length = 410

 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I++A   E      S++  G VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 182 IVQAQHEEAAKKIFSELVAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 240

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
               +VG E+  +VL V  + +RI+++ K+TL      I    A  T   +  G + ++ 
Sbjct: 241 ADVLEVGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVGT---VLTGTVKRLT 297

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 298 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSI 354



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 63/355 (17%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 663
           +GV+G  P ++L   P    + +  VG  +   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGVVPANQLSTKPVDNINDVVKVGDELDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 664 --------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
                   DD    G  ++  V       +VV    +G+   ++ T+H  + L       
Sbjct: 105 WNEIQKKFDD----GETITATVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK--- 157

Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNII 773
                G E +  ++    S N L+ +   ++ +  +  +    S +    VV G V  + 
Sbjct: 158 -----GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELVAGDVVEGKVARMT 212

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G F+  LG + G    S+         +    VGQ V+  +L+V+ E  RI+LS+KQ+
Sbjct: 213 NFGAFID-LGGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPERERISLSIKQT 271

Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                D         +EEK A                   +G+V+ G V     FG  V 
Sbjct: 272 LPGPWDD--------IEEKAA-------------------VGTVLTGTVKRLTSFGAFV- 303

Query: 894 FEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            E    V G      I+H  +A     +E+G  ++  +L+V    + + LS+K +
Sbjct: 304 -EVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKAL 357



 Score = 47.8 bits (112), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL+V+P  
Sbjct: 203  VVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPER 261

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ +++K +        E        VG ++ G +KR+ S+G F+ +
Sbjct: 262  ERISLSIKQTLPGPWDDIE----EKAAVGTVLTGTVKRLTSFGAFVEV 305



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 34/196 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G+++++ +   G  + +G  + G VH +E+           YD     P    + 
Sbjct: 201  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEIS----------YDHVD-KPADVLEV 246

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KVL +         + LS++ +L G               P   +E  E  +  
Sbjct: 247  GQEVKVKVLNVDPERE---RISLSIKQTLPG---------------PWDDIE--EKAAVG 286

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+V+P 
Sbjct: 287  TVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPE 346

Query: 1440 SKRVEVTLKTSDSRTA 1455
             +R+ +++K  +   A
Sbjct: 347  RQRLGLSIKALEEAPA 362


>gi|229814996|ref|ZP_04445334.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM
           13280]
 gi|229809483|gb|EEP45247.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM
           13280]
          Length = 386

 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLKSGMRLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T      A++  Y       I  G +TK+   G FV   +G++G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRALVKKYPVGA---IVEGTVTKLVPFGAFVDLGDGIEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+      +P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMANKHVDQPAQVTAVGSKVQVKVMEIDLDRRRISLSM 360


>gi|319779316|ref|YP_004130229.1| 30S ribosomal protein S1 [Taylorella equigenitalis MCE9]
 gi|397661554|ref|YP_006502254.1| 30s ribosomal protein S1 [Taylorella equigenitalis ATCC 35865]
 gi|317109340|gb|ADU92086.1| SSU ribosomal protein S1p [Taylorella equigenitalis MCE9]
 gi|394349733|gb|AFN35647.1| 30s ribosomal protein S1 [Taylorella equigenitalis ATCC 35865]
 gi|399114948|emb|CCG17744.1| 30s ribosomal protein S1 [Taylorella equigenitalis 14/56]
          Length = 569

 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 161/372 (43%), Gaps = 30/372 (8%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L++S  E L     +++ G VVKG V  +  +GA V   GG+  L  +  M+   +  P
Sbjct: 183 VLESSMGEELQKLLENLQEGSVVKGTVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHP 241

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +   VG E+  +VL       R+++  K+      + + + Y +  D  +T G +T I 
Sbjct: 242 SEVLTVGQEVEAKVLKFDKDKNRVSLGIKQLGEDPWVGLATRYPK--DSKLT-GKVTNIT 298

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-M 655
           ++G FV    G++G    SE+   +   +P  +   GQ ++  ++      RRI+L    
Sbjct: 299 EYGAFVEVETGIEGLVHVSEMDWTNKNVDPRKVVSQGQEIEVCVLEIDEDRRRISLGMKQ 358

Query: 656 MKPTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHAT 712
           ++P    E  +  K G  + G +  +T     V++  +G   G I   HL+D    E   
Sbjct: 359 VQPNPWEEFANNHKRGDRIKGAIKSITDFG--VFIGLEGGIDGLI---HLSDLSWNEPGE 413

Query: 713 VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVH 766
           V    +  G E + +++ +D E   + L  K        QL  D      S    +S+V 
Sbjct: 414 VYVRKLSKGDEIEAIVIAIDTEKERISLGHK--------QLEGDPFTMYTSAHEKSSLVK 465

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V ++   G  V     + G+   S+  +G+  D +     G  V + I++++ +   I
Sbjct: 466 GVVKSVEPKGATVTLDSEVEGYLRASEISNGRIEDATTVLKEGDEVEAMIINIDRKARSI 525

Query: 827 TLSLKQSCCSST 838
            LS+K    + T
Sbjct: 526 QLSIKARENAQT 537



 Score = 40.8 bits (94), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 1367 GKHLEKI-EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1425
            G+ L+K+ E+L    +V+G VKN+T  G F+ L   +D  + +++++   V  P +   +
Sbjct: 189  GEELQKLLENLQEGSVVKGTVKNITEYGAFVDLG-GIDGLLHITDMAWRRVRHPSEVLTV 247

Query: 1426 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
            G+ V  +VL  +    RV + +K    D      +     S L       G++  +  YG
Sbjct: 248  GQEVEAKVLKFDKDKNRVSLGIKQLGEDPWVGLATRYPKDSKL------TGKVTNITEYG 301

Query: 1484 LFITIE 1489
             F+ +E
Sbjct: 302  AFVEVE 307


>gi|296113088|ref|YP_003627026.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
 gi|416158124|ref|ZP_11605563.1| 30S ribosomal protein S1 [Moraxella catarrhalis 101P30B1]
 gi|416225062|ref|ZP_11626802.1| 30S ribosomal protein S1 [Moraxella catarrhalis 103P14B1]
 gi|416230929|ref|ZP_11628587.1| 30S ribosomal protein S1 [Moraxella catarrhalis 46P47B1]
 gi|416242556|ref|ZP_11633592.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC7]
 gi|416249498|ref|ZP_11636595.1| 30S ribosomal protein S1 [Moraxella catarrhalis CO72]
 gi|421779914|ref|ZP_16216404.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
 gi|295920782|gb|ADG61133.1| 30S ribosomal protein S1 [Moraxella catarrhalis BBH18]
 gi|326560081|gb|EGE10471.1| 30S ribosomal protein S1 [Moraxella catarrhalis 46P47B1]
 gi|326561667|gb|EGE12004.1| 30S ribosomal protein S1 [Moraxella catarrhalis 103P14B1]
 gi|326571140|gb|EGE21164.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC7]
 gi|326573434|gb|EGE23402.1| 30S ribosomal protein S1 [Moraxella catarrhalis 101P30B1]
 gi|326575670|gb|EGE25593.1| 30S ribosomal protein S1 [Moraxella catarrhalis CO72]
 gi|407812708|gb|EKF83492.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
          Length = 557

 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 147/350 (42%), Gaps = 32/350 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ GM V+G V  +  +GA V   GG+  L  +  M+   I  P +  +VG +L  +VL 
Sbjct: 190 LEEGMEVEGIVKNLTEYGAFVDL-GGIDGLLHITDMAWKRIKHPSEAVEVGQDLKVKVLK 248

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+        +  +Y   T   IT   +T +  +GCF     G++G  
Sbjct: 249 FDRERNRVSLGLKQLGADPWTEVEQTYPVGT---ITKARVTNLTDYGCFAEIAEGIEGLV 305

Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLG 670
             SE+   +    PS +  VG  V   ++      RRI+L      P   +E D   + G
Sbjct: 306 HVSEMDHTNKNIHPSKVVQVGDEVNVMVLEIDGERRRISLGIKQTMPNPWAEFDKNHEKG 365

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ---- 726
             +SG +  +T   + +     G   G     HL+D +      +  I+   + D     
Sbjct: 366 QKISGTIKSITDFGLFI-----GLEGGIDGLVHLSD-ISWTESGEEAIRNYSKGDTVEAV 419

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
           +L +D E++ + L  K        QL SD    ++  N   ++V G V  +   G  +  
Sbjct: 420 VLSVDAEANRISLGIK--------QLNSDPFNEYLLSNDRGAIVKGTVKEVDAKGAVITL 471

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + G+   +     +  D SK   VG  V + I+ V+ ++  I+LS+K
Sbjct: 472 ADEVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKSRNISLSIK 521



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 146/360 (40%), Gaps = 45/360 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L  ++EGM +   VK++ ++G  +  G     G L   ++A    ++    V+ G  L+ 
Sbjct: 187 LAKLEEGMEVEGIVKNLTEYGAFVDLG--GIDGLLHITDMAWKRIKHPSEAVEVGQDLKV 244

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L +DP T             ++   P G +   RV ++ + G
Sbjct: 245 KVLKFDRERNRVSLGLKQLGADPWT------------EVEQTYPVGTITKARVTNLTDYG 292

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
                     G V +  + +T    +         +VN  +L +D   R + L +     
Sbjct: 293 CFAEIAEGIEGLVHVSEMDHTNKNIHPSKVVQVGDEVNVMVLEIDGERRRISLGIKQTMP 352

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
           NP+   ++   +H K   I    K +  D GL + L+     +   + ++ ++  EE +R
Sbjct: 353 NPWAEFDK---NHEKGQKISGTIKSI-TDFGLFIGLEGGIDGLVHLSDISWTESGEEAIR 408

Query: 452 KLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIA 508
                Y +G  V   +L        ++ GI  L +  F   + ++     G +VKG V  
Sbjct: 409 N----YSKGDTVEAVVLSVDAEANRISLGIKQLNSDPFNEYLLSND---RGAIVKGTVKE 461

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
           VD+ GA++     V+    +  ++        K   VG E+  +++GV  KS+ I+++ K
Sbjct: 462 VDAKGAVITLADEVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKSRNISLSIK 521



 Score = 41.2 bits (95), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV+G VK V +KG  I L+ +++  + +++++    E   K   +G  V  +++ V+  S
Sbjct: 454  IVKGTVKEVDAKGAVITLADEVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKS 513

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLH-------VGDIVIGQIK 1477
            + + +++K  D     Q+ I  LSN         +GDI   Q+K
Sbjct: 514  RNISLSIKAKDEADERQA-IKELSNTAAETQPKTLGDIFGEQLK 556


>gi|410625445|ref|ZP_11336230.1| small subunit ribosomal protein S1 [Glaciecola mesophila KMM 241]
 gi|410155041|dbj|GAC22999.1| small subunit ribosomal protein S1 [Glaciecola mesophila KMM 241]
          Length = 579

 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 144/348 (41%), Gaps = 24/348 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 209 ANLEEGHEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 267

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+        I   Y E +      G +T +  +GCFV   +GV+G
Sbjct: 268 LKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSK---LSGAVTNLTDYGCFVEIEDGVEG 324

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 669
               SE+   +    PS + ++G  V+  ++      RRI+L     KP    E    K 
Sbjct: 325 LVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEE--FAKA 382

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E 
Sbjct: 383 QSKGDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNKTGEDAVREYKKGDEI 437

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
              +L +D E   + L  K    +   Q  +D       ++V G V  +   G  V+   
Sbjct: 438 SAVVLQVDPERERISLGVKQIEEDPFNQYLTDTKK---GTIVVGTVTEVDAKGVTVKLAE 494

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G+   +     +  D S+   VG+ + +  + V+ +   + LS+K
Sbjct: 495 EVEGYIRATDLARERVEDASEVASVGEEIEAKFMGVDRKNRIVNLSVK 542



 Score = 47.0 bits (110), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVL 554
           G  V GK+ ++  FG  +   GG+  L    H+S+    K G    +++K G E+   VL
Sbjct: 386 GDKVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNKTGEDAVREYKKGDEISAVVL 442

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  + +RI++  K+         L+   + T   I  G +T+++  G  V+    V+G+
Sbjct: 443 QVDPERERISLGVKQIEEDPFNQYLTDTKKGT---IVVGTVTEVDAKGVTVKLAEEVEGY 499

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
              ++L  +   + S +  VG+ ++ + M     +R +NLS   K
Sbjct: 500 IRATDLARERVEDASEVASVGEEIEAKFMGVDRKNRIVNLSVKAK 544


>gi|54297331|ref|YP_123700.1| 30S ribosomal protein S1 [Legionella pneumophila str. Paris]
 gi|161723255|ref|YP_095450.2| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
            str. Philadelphia 1]
 gi|397663853|ref|YP_006505391.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila]
 gi|397667039|ref|YP_006508576.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila]
 gi|53751116|emb|CAH12527.1| 30S ribosomal protein S1 [Legionella pneumophila str. Paris]
 gi|395127264|emb|CCD05454.1| 30S ribosomal subunit protein S1 [Legionella pneumophila subsp.
            pneumophila]
 gi|395130450|emb|CCD08690.1| 30S ribosomal subunit protein S1 [Legionella pneumophila subsp.
            pneumophila]
          Length = 558

 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 156/371 (42%), Gaps = 62/371 (16%)

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            +H    +HG V N+ + G F+  LG + G    +     +    S+   VGQ V+  +L 
Sbjct: 189  LHDGQELHGIVKNLTDYGAFID-LGGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLS 247

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
             +SE  R++L +KQ                             N   +  VE + IG  +
Sbjct: 248  FDSERNRVSLGMKQLG---------------------------NDPWVDLVERYPIGKRL 280

Query: 879  EGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
            +GKV    D+G  V  EE      H     +   +      V  G V+   +L++ +  R
Sbjct: 281  QGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEERR 340

Query: 933  LVDLSLKTVFIDRFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSL 990
             + L +K    + +++ A+++ + +K K K  +  D G+   ++  ++ +V  + +  ++
Sbjct: 341  RISLGMKQCVGNPWQQFASTHNKGEKVKGKIRSITDFGIFIGLDGDIDGLVHLSDISWTV 400

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
            P      G  +V          KQF  GQ + A ++A+       R+ L LK +      
Sbjct: 401  P------GEEAV----------KQFKKGQELEAVILAIDPERE--RISLGLKQLE----- 437

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 1110
                A    +Y  GS+V+  +T ++P  + +       G I ++E++D++   V++  + 
Sbjct: 438  GDSFASFAETYTKGSIVKGTVTAVEPKTVTVALAEDVSGTIRVSELSDER---VDDATTI 494

Query: 1111 FKIGQTVTARI 1121
             K+G  V A+I
Sbjct: 495  VKVGDEVEAKI 505



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 146/374 (39%), Gaps = 30/374 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  + G V  +  +GA +   GG+  L  +  +S   +  P +   VG ++  +VL   S
Sbjct: 192 GQELHGIVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFDS 250

Query: 559 KRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +R  V+   K L       L        RL   G +T I  +GCFV    GV+G    SE
Sbjct: 251 ERNRVSLGMKQLGNDPWVDLVERYPIGKRL--QGKVTNITDYGCFVEIEEGVEGLVHMSE 308

Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLV 673
           +   +    PS +  +G VV   ++      RRI+L        P +       K G  V
Sbjct: 309 MDWTNKNVHPSKVVSLGDVVDVMVLEIDEERRRISLGMKQCVGNPWQQFASTHNK-GEKV 367

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-LLVL 730
            G +  +T     +++   G   G +   HL+D        ++V   K G E +  +L +
Sbjct: 368 KGKIRSITDFG--IFIGLDGDIDGLV---HLSDISWTVPGEEAVKQFKKGQELEAVILAI 422

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
           D E   + L  K           S A      S+V G V  +      V     ++G   
Sbjct: 423 DPERERISLGLKQL---EGDSFASFAETYTKGSIVKGTVTAVEPKTVTVALAEDVSGTIR 479

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC----------SSTDA 840
            S+  D +  D +    VG  V + I +++ +   I+LS+K              S T+A
Sbjct: 480 VSELSDERVDDATTIVKVGDEVEAKITNIDRKNRTISLSVKAKDAQDEADAIKKYSRTEA 539

Query: 841 SFMQEHFLLEEKIA 854
           +      LL+EK+A
Sbjct: 540 ASTTLGDLLKEKMA 553



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L     + G VKN+T  G FI L   +D  + ++++S   V+ P +   +G+ V  +
Sbjct: 186  LESLHDGQELHGIVKNLTDYGAFIDLG-GIDGLLHITDISWKRVKHPSEVLSVGQDVKVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VLS +    RV + +K    +  +   ++ +    +G  + G++  +  YG F+ IE
Sbjct: 245  VLSFDSERNRVSLGMK----QLGNDPWVDLVERYPIGKRLQGKVTNITDYGCFVEIE 297


>gi|288941369|ref|YP_003443609.1| 30S ribosomal protein S1 [Allochromatium vinosum DSM 180]
 gi|288896741|gb|ADC62577.1| ribosomal protein S1 [Allochromatium vinosum DSM 180]
          Length = 560

 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 145/351 (41%), Gaps = 32/351 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA +   GG+  L  +  M+   +  P +  ++G E+  +VL
Sbjct: 188 NLEEGMEVKGVVKNLTDYGAFLDL-GGIDGLLHITDMAWRRVKHPSEVVEIGDEISVKVL 246

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               + +R+++  K+      + I   Y E+T      G +T I  +GCFV    GV+G 
Sbjct: 247 KFDRERQRVSLGLKQMGEDPWVNISRRYPESTR---VFGKVTNIADYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KL 669
              SE+   +    PS + ++G  V+  ++      RRI+L          E+  V  K 
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVMVLDIDEERRRISLGIKQCAMNPWEEFAVTHKK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQL 727
           G  VSG +  +T   + +     G   G     HL+D    E         K G E + +
Sbjct: 364 GDHVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWDEAGENALRRYKKGDELETV 418

Query: 728 -LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVR 780
            L +D E   + L  K        QL  D      A H    SVV G V  +   G  + 
Sbjct: 419 VLSVDPERERISLGVK--------QLDKDPFSSFVALH-EKGSVVTGVVAEVDAKGATIT 469

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G+   S+    +  D      VG+ + +  L V+ +   ++LS+K
Sbjct: 470 LGEGVEGYLRASEISRDRVEDARAVLKVGEEIEAKFLGVDRKNRTLSLSMK 520



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 98/451 (21%), Positives = 183/451 (40%), Gaps = 75/451 (16%)

Query: 247 GYILHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGV-----VRSIDRTRKVVYLSS 298
           G+ +  G  +   FLP       S +DV+P      L+G      V  +DR R  V +S 
Sbjct: 119 GFTVDLG--TVRAFLP------GSLVDVRPVRDTTYLEGKEQEFKVIKLDRKRNNVVVSR 170

Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
                 + V ++      D L+  +     V+ +++N      LT +   +D+  +    
Sbjct: 171 ------RAVVEEEYSAERDQLLKNLEEGMEVKGVVKN------LTDYGAFLDLGGIDGLL 218

Query: 359 PTTNWKNDYNQH--------KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV 405
             T+      +H         +++ ++L  D   + V L L     +P++  +R  P   
Sbjct: 219 HITDMAWRRVKHPSEVVEIGDEISVKVLKFDRERQRVSLGLKQMGEDPWVNISRRYPEST 278

Query: 406 ----KVGDIYDQSKVVRVDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
               KV +I D    V ++ G+ GL+    +D  +  +     V + D  E  V  ++++
Sbjct: 279 RVFGKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMVLDIDEE 338

Query: 457 YKEGSCVRVRI-LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
                  R RI LG +            + +E    TH   K G  V GK+ ++  FG  
Sbjct: 339 -------RRRISLGIKQC--------AMNPWEEFAVTH---KKGDHVSGKIKSITDFGIF 380

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFRVLGVKSKRITVTHK-KTLVKSK 573
           +   GG+  L  L  +S  E  +   +++K G EL   VL V  +R  ++   K L K  
Sbjct: 381 IGLDGGIDGLVHLSDISWDEAGENALRRYKKGDELETVVLSVDPERERISLGVKQLDKDP 440

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
            +   +  E     +  G + +++  G  +    GV+G+   SE+  D   +  ++  VG
Sbjct: 441 FSSFVALHEKGS--VVTGVVAEVDAKGATITLGEGVEGYLRASEISRDRVEDARAVLKVG 498

Query: 634 QVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           + ++ + +     +R ++LS  MK   V E+
Sbjct: 499 EEIEAKFLGVDRKNRTLSLS--MKAKDVEEE 527



 Score = 47.0 bits (110), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 147/380 (38%), Gaps = 55/380 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L+ ++EGM +   VK++ D+G  L  G     G L   ++A    ++    V+ G  +  
Sbjct: 186 LKNLEEGMEVKGVVKNLTDYGAFLDLG--GIDGLLHITDMAWRRVKHPSEVVEIGDEISV 243

Query: 283 VVRSIDRTRKVVYLS-----SDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R+ V L       DP             ++I    P    V  +V +I + G
Sbjct: 244 KVLKFDRERQRVSLGLKQMGEDP------------WVNISRRYPESTRVFGKVTNIADYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-----TL 391
             +       G V +  +  T    +     N   +V   +L +D   R + L      +
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMVLDIDEERRRISLGIKQCAM 351

Query: 392 NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+    + H +      K+  I D    + +D G+  L             V +SD++ 
Sbjct: 352 NPWEEFAVTHKKGDHVSGKIKSITDFGIFIGLDGGIDGL-------------VHLSDISW 398

Query: 448 EEV-RKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           +E      ++YK+G  +   +L     R    L    L    F   V  H   + G VV 
Sbjct: 399 DEAGENALRRYKKGDELETVVLSVDPERERISLGVKQLDKDPFSSFVALH---EKGSVVT 455

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
           G V  VD+ GA +    GV+       +S   +       KVG E+  + LGV  K++ +
Sbjct: 456 GVVAEVDAKGATITLGEGVEGYLRASEISRDRVEDARAVLKVGEEIEAKFLGVDRKNRTL 515

Query: 562 TVTHKKTLVKSKLAILSSYA 581
           +++ K   V+ + + +  Y+
Sbjct: 516 SLSMKAKDVEEEQSAIKGYS 535



 Score = 40.4 bits (93), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +++L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   IG  ++ +
Sbjct: 186  LKNLEEGMEVKGVVKNLTDYGAFLDLG-GIDGLLHITDMAWRRVKHPSEVVEIGDEISVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +   +RV + LK    +      +N          V G++  +  YG F+ IE
Sbjct: 245  VLKFDRERQRVSLGLK----QMGEDPWVNISRRYPESTRVFGKVTNIADYGCFVEIE 297


>gi|210631374|ref|ZP_03296877.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279]
 gi|210160057|gb|EEA91028.1| 30S ribosomal protein S1 [Collinsella stercoris DSM 13279]
          Length = 386

 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLKSGMRLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T      A++  Y       I  G +TK+   G FV   +G++G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRALVKKYPVGA---IVEGTVTKLVPFGAFVDLGDGIEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+      +P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMANKHVDQPAQVTAVGAKVQVKVMEIDLDRRRISLSM 360


>gi|328955788|ref|YP_004373121.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
 gi|328456112|gb|AEB07306.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
          Length = 422

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K GM + G V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLKSGMRLTGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T      A++  Y       I  G +TK+   G FV    G++G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRALVKKYPVGA---IVEGRVTKLVPFGAFVDLGEGIEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+      +PS + H  + V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMANKHVDQPSQVIHTNEAVQVKVMEIDLDRRRISLSM 360



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 147/369 (39%), Gaps = 58/369 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     V      +G  P  EL +    +PS +  VG  ++  ++      
Sbjct: 36  LVSGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRKDADPSELVSVGDPIEALVLQKEDKD 95

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +     R+ E      G  V G V  V    +++ +  +G+    +P  
Sbjct: 96  GRLVLSKKRAEYERAWNRIEEK--FNTGENVEGEVIEVVKGGLILDIGLRGF----LPA- 148

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
            L D L     + S +    E  +++ +D   +N++LS +  L  S +   S+  S +  
Sbjct: 149 SLVD-LRRVKDLTSYMGTSIEA-RVIEMDRNRNNVVLSRRVVLEESRKAERSEILSKLKS 206

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 207 GMRLTGTVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDL 265

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 878
              RI+L LKQ+                              +E  W   V+ + +G+++
Sbjct: 266 NRERISLGLKQT------------------------------TEDPWRALVKKYPVGAIV 295

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGS-------VIQAAILDVAKAE 931
           EG+V +   FG  V   E   + G +   ++A   V+  S        +Q  ++++    
Sbjct: 296 EGRVTKLVPFGAFVDLGEG--IEGLVHISEMANKHVDQPSQVIHTNEAVQVKVMEIDLDR 353

Query: 932 RLVDLSLKT 940
           R + LS+K 
Sbjct: 354 RRISLSMKA 362


>gi|416217715|ref|ZP_11624448.1| 30S ribosomal protein S1 [Moraxella catarrhalis 7169]
 gi|416235529|ref|ZP_11630205.1| 30S ribosomal protein S1 [Moraxella catarrhalis 12P80B1]
 gi|416240484|ref|ZP_11632455.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC1]
 gi|416246645|ref|ZP_11635103.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC8]
 gi|416254830|ref|ZP_11638932.1| 30S ribosomal protein S1 [Moraxella catarrhalis O35E]
 gi|326560464|gb|EGE10846.1| 30S ribosomal protein S1 [Moraxella catarrhalis 7169]
 gi|326564205|gb|EGE14441.1| 30S ribosomal protein S1 [Moraxella catarrhalis 12P80B1]
 gi|326565804|gb|EGE15966.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC1]
 gi|326570457|gb|EGE20497.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC8]
 gi|326577136|gb|EGE27030.1| 30S ribosomal protein S1 [Moraxella catarrhalis O35E]
          Length = 557

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 147/350 (42%), Gaps = 32/350 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ GM V+G V  +  +GA V   GG+  L  +  M+   I  P +  +VG +L  +VL 
Sbjct: 190 LEEGMEVEGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEAVEVGQDLKVKVLK 248

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+        +  +Y   T   IT   +T +  +GCF     G++G  
Sbjct: 249 FDRERNRVSLGLKQLGADPWTEVEQTYPVGT---ITKARVTNLTDYGCFAEIAEGIEGLV 305

Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLG 670
             SE+   +    PS +  VG  V   ++      RRI+L      P   +E D   + G
Sbjct: 306 HVSEMDHTNKNIHPSKVVQVGDEVNVMVLEIDGERRRISLGIKQTMPNPWAEFDKNHEKG 365

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ---- 726
             +SG +  +T   + +     G   G     HL+D +      +  I+   + D     
Sbjct: 366 QKISGTIKSITDFGLFI-----GLEGGIDGLVHLSD-ISWTESGEEAIRNYSKGDTVEAV 419

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
           +L +D E++ + L  K        QL SD    ++  N   ++V G V  +   G  +  
Sbjct: 420 VLSVDAEANRISLGIK--------QLNSDPFNEYLLSNDRGAIVKGTVKEVDAKGAVITL 471

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + G+   +     +  D SK   VG  V + I+ V+ ++  I+LS+K
Sbjct: 472 ADEVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKSRNISLSIK 521



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 146/360 (40%), Gaps = 45/360 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L  ++EGM +   VK++ D+G  +  G     G L   ++A    ++    V+ G  L+ 
Sbjct: 187 LAKLEEGMEVEGIVKNLTDYGAFVDLG--GIDGLLHITDMAWKRIKHPSEAVEVGQDLKV 244

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L +DP T             ++   P G +   RV ++ + G
Sbjct: 245 KVLKFDRERNRVSLGLKQLGADPWT------------EVEQTYPVGTITKARVTNLTDYG 292

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
                     G V +  + +T    +         +VN  +L +D   R + L +     
Sbjct: 293 CFAEIAEGIEGLVHVSEMDHTNKNIHPSKVVQVGDEVNVMVLEIDGERRRISLGIKQTMP 352

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
           NP+   ++   +H K   I    K +  D GL + L+     +   + ++ ++  EE +R
Sbjct: 353 NPWAEFDK---NHEKGQKISGTIKSI-TDFGLFIGLEGGIDGLVHLSDISWTESGEEAIR 408

Query: 452 KLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIA 508
                Y +G  V   +L        ++ GI  L +  F   + ++     G +VKG V  
Sbjct: 409 N----YSKGDTVEAVVLSVDAEANRISLGIKQLNSDPFNEYLLSND---RGAIVKGTVKE 461

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
           VD+ GA++     V+    +  ++        K   VG E+  +++GV  KS+ I+++ K
Sbjct: 462 VDAKGAVITLADEVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKSRNISLSIK 521



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV+G VK V +KG  I L+ +++  + +++++    E   K   +G  V  +++ V+  S
Sbjct: 454  IVKGTVKEVDAKGAVITLADEVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKS 513

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLH-------VGDIVIGQIK 1477
            + + +++K  D     Q+ I  LSN         +GDI   Q+K
Sbjct: 514  RNISLSIKAKDEADERQA-IKELSNTAAETQPKTLGDIFGEQLK 556


>gi|320102727|ref|YP_004178318.1| 30S ribosomal protein S1 [Isosphaera pallida ATCC 43644]
 gi|319750009|gb|ADV61769.1| SSU ribosomal protein S1P [Isosphaera pallida ATCC 43644]
          Length = 594

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 178/464 (38%), Gaps = 59/464 (12%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           + KV R  +G GLL+DI      P++ V       I D  ++E+  +  K  E    R  
Sbjct: 128 KGKVTRKIKG-GLLVDIGVNVFLPASQVDIRRPPDIGDYIDQEIECVILKIDEAR--RNI 184

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
           ++  R L  +   + K +         ++++PG + KG V  +  FGA V   GG+  L 
Sbjct: 185 VVSRRKLIEMTRELQKKTLL-------AEIEPGQIRKGVVKNIADFGAFVDL-GGIDGLL 236

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 584
            +  MS   I  P     +  E+   V+ V  + ++I +  K+        +   Y   +
Sbjct: 237 HITDMSWGRINNPTDMVAINDEIEVYVIHVDKEKEKIALGLKQKTASPWDNVAEKYPVGS 296

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSS 643
                 G +  +  +G FV+   G++G    SE+        PS + ++G  V+  +++ 
Sbjct: 297 K---VTGEVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRINHPSELVNIGDKVEVVVLNI 353

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT-IPTE 702
               + I+L   MK T+++  D V +            PN  +   +    + G  I  E
Sbjct: 354 NKEKQEISLG--MKQTQINPWDQVAVK---------YPPNTEIEGTVRNLTNYGAFIEIE 402

Query: 703 HLADHLEHATVMKSVIKPGYEFD----------QLLVLDNESSNLLLSAKYSLINSAQQL 752
              D L H + M    K G+  +          Q+L +D E   + L  K        QL
Sbjct: 403 EGIDGLLHISDMSWTRKIGHPNELLQKGERIRCQVLSVDQERKRIALGLK--------QL 454

Query: 753 PSDA------SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
             D           PN +V G V  +   G FV     L G    S+  D +        
Sbjct: 455 REDPWENDIPKRYQPNQMVTGKVTKLTNFGVFVELEPGLEGLLHISELSDQKVESPDDVV 514

Query: 807 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
            +GQ +   +L V+    +I LSLK+        + + E  L E
Sbjct: 515 QLGQEIEVRVLRVDRNERKIGLSLKKPPSDEVAGAELGERQLAE 558



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 133/303 (43%), Gaps = 50/303 (16%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAVT 1217
            +G +VTG V  V +  A + +   ++  + I + ++      PSEL       +IG  V 
Sbjct: 294  VGSKVTGEVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRINHPSEL------VNIGDKVE 347

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              VL+INKEK+ + L ++  Q    D+       N +    EG +      + L+  G  
Sbjct: 348  VVVLNINKEKQEISLGMKQTQINPWDQVAVKYPPNTEI---EGTV------RNLTNYGAF 398

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
            + +I   + G +H +++           +      P     +G+ ++C+VL + +  +  
Sbjct: 399  I-EIEEGIDGLLHISDM----------SWTRKIGHPNELLQKGERIRCQVLSVDQERK-- 445

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
                   R +L G+          D+  P ++        PN +V G V  +T+ G F+ 
Sbjct: 446  -------RIAL-GLKQLREDPWENDI--PKRY-------QPNQMVTGKVTKLTNFGVFVE 488

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1457
            L   L+  + +S LSD  VESP+    +G+ +  RVL V+   +++ ++LK   S   + 
Sbjct: 489  LEPGLEGLLHISELSDQKVESPDDVVQLGQEIEVRVLRVDRNERKIGLSLKKPPSDEVAG 548

Query: 1458 SEI 1460
            +E+
Sbjct: 549  AEL 551



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 156/408 (38%), Gaps = 68/408 (16%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            +L +D    N+++S +  LI   ++L      + I P  +  G V NI + G FV  LG 
Sbjct: 174  ILKIDEARRNIVVS-RRKLIEMTRELQKKTLLAEIEPGQIRKGVVKNIADFGAFVD-LGG 231

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    +    G+  + +    +   +   ++ V+ E  +I L LKQ   S  D     
Sbjct: 232  IDGLLHITDMSWGRINNPTDMVAINDEIEVYVIHVDKEKEKIALGLKQKTASPWDNV--- 288

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
                                     E + +GS + G+V     +G  V  EE      H 
Sbjct: 289  ------------------------AEKYPVGSKVTGEVVNVMSYGAFVKLEEGIEGLVHI 324

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
                +          V  G  ++  +L++ K ++ + L +K   I+ +     ++ A K 
Sbjct: 325  SEMSWTKRINHPSELVNIGDKVEVVVLNINKEKQEISLGMKQTQINPW-----DQVAVKY 379

Query: 959  KRKREASKDLGVHQTVNAIVEIVK--ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
                E    +       A +EI +  +  L +S   +   IG+           P +   
Sbjct: 380  PPNTEIEGTVRNLTNYGAFIEIEEGIDGLLHISDMSWTRKIGH-----------PNELLQ 428

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISET--ETSSSKRAKKKSSYDVGSLVQAEITEI 1074
             G+ +   V+++       R+ L LK + E   E    KR      Y    +V  ++T++
Sbjct: 429  KGERIRCQVLSVDQERK--RIALGLKQLREDPWENDIPKR------YQPNQMVTGKVTKL 480

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
                + ++   G  G +HI+E++D K   VE+     ++GQ +  R++
Sbjct: 481  TNFGVFVELEPGLEGLLHISELSDQK---VESPDDVVQLGQEIEVRVL 525



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 38/231 (16%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1318
            E D+V G++++ + G  GL+V IG ++     F     + +  P          P  G  
Sbjct: 123  ENDVVKGKVTRKIKG--GLLVDIGVNV-----FLPASQVDIRRP----------PDIGDY 165

Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1378
              Q ++C +L+I    R   ++ +S R  ++         L             + ++ P
Sbjct: 166  IDQEIECVILKIDEARR---NIVVSRRKLIEMTRELQKKTL-------------LAEIEP 209

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
              I +G VKN+   G F+ L   +D  + ++++S G + +P     I   +   V+ V+ 
Sbjct: 210  GQIRKGVVKNIADFGAFVDLG-GIDGLLHITDMSWGRINNPTDMVAINDEIEVYVIHVDK 268

Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              +++ + LK    +TAS  + N      VG  V G++  V SYG F+ +E
Sbjct: 269  EKEKIALGLK---QKTASPWD-NVAEKYPVGSKVTGEVVNVMSYGAFVKLE 315



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 173/411 (42%), Gaps = 66/411 (16%)

Query: 188 HVGQLVSCIVLQLDDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
           ++ Q + C++L++D+ ++ I   +RK+ + +   L  K L L  ++ G +    VK+I D
Sbjct: 165 YIDQEIECVILKIDEARRNIVVSRRKL-IEMTRELQKKTL-LAEIEPGQIRKGVVKNIAD 222

Query: 246 HGYILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV 293
            G  +  G     G L            P + +A N  I+V         V  +D+ ++ 
Sbjct: 223 FGAFVDLG--GIDGLLHITDMSWGRINNPTDMVAINDEIEV--------YVIHVDKEKEK 272

Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
           + L     T S         ++    V G  V+  V +++  G  +       G V I  
Sbjct: 273 IALGLKQKTASPW-----DNVAEKYPV-GSKVTGEVVNVMSYGAFVKLEEGIEGLVHISE 326

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-----TLNPY-LLHNRAPPS---H 404
           +  T    +     N   KV   +L ++   + + L      +NP+  +  + PP+    
Sbjct: 327 MSWTKRINHPSELVNIGDKVEVVVLNINKEKQEISLGMKQTQINPWDQVAVKYPPNTEIE 386

Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGS 461
             V ++ +    + ++ G+  LL              ISD++    RK+    +  ++G 
Sbjct: 387 GTVRNLTNYGAFIEIEEGIDGLL-------------HISDMSW--TRKIGHPNELLQKGE 431

Query: 462 CVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
            +R ++L   +  + +A G+  L+   +E  +      +P  +V GKV  + +FG  V+ 
Sbjct: 432 RIRCQVLSVDQERKRIALGLKQLREDPWENDIPKR--YQPNQMVTGKVTKLTNFGVFVEL 489

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
             G++ L  +  +S+ ++  P    ++G E+  RVL V    ++I ++ KK
Sbjct: 490 EPGLEGLLHISELSDQKVESPDDVVQLGQEIEVRVLRVDRNERKIGLSLKK 540



 Score = 41.6 bits (96), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 50/283 (17%)

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            Y VGS V  E+  +      +K   G  G +HI+E++  K   + +      IG  V   
Sbjct: 292  YPVGSKVTGEVVNVMSYGAFVKLEEGIEGLVHISEMSWTKR--INHPSELVNIGDKVEV- 348

Query: 1121 IIAKSNKPDMKKSF-LWELSIKPSMLTVSEIGSKLLFEECDVSI--GQRVTGYVYKVDNE 1177
            ++   NK   + S  + +  I P             +++  V       + G V  + N 
Sbjct: 349  VVLNINKEKQEISLGMKQTQINP-------------WDQVAVKYPPNTEIEGTVRNLTNY 395

Query: 1178 WALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             A + I   +   L I D ++      P+EL         G+ +   VLS+++E+K + L
Sbjct: 396  GAFIEIEEGIDGLLHISDMSWTRKIGHPNEL------LQKGERIRCQVLSVDQERKRIAL 449

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
             L+  ++       D   +++        +V G+++K+ +   G+ V++ P L G +H +
Sbjct: 450  GLKQLRE-------DPWENDIPKRYQPNQMVTGKVTKLTN--FGVFVELEPGLEGLLHIS 500

Query: 1293 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
            EL +  V  P    D  Q         GQ ++ +VL + R  R
Sbjct: 501  ELSDQKVESP---DDVVQL--------GQEIEVRVLRVDRNER 532


>gi|262370393|ref|ZP_06063719.1| ribosomal protein S1 [Acinetobacter johnsonii SH046]
 gi|381196229|ref|ZP_09903571.1| 30S ribosomal protein S1 [Acinetobacter lwoffii WJ10621]
 gi|262314735|gb|EEY95776.1| ribosomal protein S1 [Acinetobacter johnsonii SH046]
          Length = 558

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI++ Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDKERNRVSLGLKQLGEDPWLAIMNRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKN 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D    E         K G   
Sbjct: 361 HDKGEKVSGTIKSITDFGIFI-----GLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        Q+ SD      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QMNSDPFNDFLAANERGALVKGTVTAVDARGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           ++    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 LKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIK 520



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 136/324 (41%), Gaps = 41/324 (12%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVRVDR 421
           ++V  ++L  D     V L L     +P+L + NR P   +   +V ++ D      +  
Sbjct: 239 QEVTVKVLKFDKERNRVSLGLKQLGEDPWLAIMNRYPKGSIVKARVTNLTDYGCFAEIAE 298

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  +     V I D  +  V +++++       R RI LG +    
Sbjct: 299 GVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE-------RRRISLGIKQT-- 349

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 +A+ +E     H     G  V G + ++  FG  +  PGG+  L  L  +S  E
Sbjct: 350 ------RANPWEEFAKNHD---KGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNE 400

Query: 536 IVKPG-KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHG 591
             +   +++K G   E V   +  +  RI++  K+          + +  A +R  +  G
Sbjct: 401 QGEEAIRRYKKGDTVEAVILSVDAEGNRISLGIKQMNSDP----FNDFLAANERGALVKG 456

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +T ++  G  ++  + V+     SE+  D   + +    VGQ V+ +I++    SR IN
Sbjct: 457 TVTAVDARGATLKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSIN 516

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSG 675
           LS   K     ++ +  L +  +G
Sbjct: 517 LSIKAKDEAEEKEAVANLKTATTG 540



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 80/410 (19%), Positives = 166/410 (40%), Gaps = 66/410 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDKERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
              ++ +L     A++               +  GS+++ +V    D+G      E   V 
Sbjct: 262  LGEDPWL-----AIMNR-------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            G +   ++            V+ G  +   +L+V +  R + L +K    + + E   N 
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKNH 361

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQ 1012
               +K           V  T+ +I +      + + LP     + + S   +N Q +   
Sbjct: 362  DKGEK-----------VSGTIKSITDF----GIFIGLPGGIDGLVHLSDISWNEQGEEAI 406

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 1072
            +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+  +T
Sbjct: 407  RRYKKGDTVEAVILSVDAEGN--RISLGIKQMNSDPFNDFLAANER-----GALVKGTVT 459

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +      LK        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 460  AVDARGATLKLADEVEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506


>gi|407696797|ref|YP_006821585.1| 30S ribosomal protein S1 [Alcanivorax dieselolei B5]
 gi|407254135|gb|AFT71242.1| 30S ribosomal protein S1 [Alcanivorax dieselolei B5]
          Length = 559

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 145/351 (41%), Gaps = 34/351 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ GMVVKG V  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +VL 
Sbjct: 189 LQEGMVVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEIVEVGQEIEVKVLK 247

Query: 556 VKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+        I+  Y E   R+     +T +  +GCF     GV+G  
Sbjct: 248 FDREKMRVSLGLKQLGEDPWHDIVQKYPEGA-RVKAR--VTNLTDYGCFAEIEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKL 669
             SE+   +    PS +  +G  V+  I+      RRI+L     +  P      +  K 
Sbjct: 305 HVSEMDWTNKNIHPSKVVEIGDEVEVMILDIDEDRRRISLGIKQCLSNPWEAFATNYQK- 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-- 727
           G  +SG +  +T   + +     G   G     HL+D +      +  ++   + D+L  
Sbjct: 364 GDRISGKIKSITDFGIFI-----GLEGGIDGLVHLSD-ISWEEAGEDAVRNFNKGDELET 417

Query: 728 --LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVR 780
             L +D E   + L  K        QL  D  A ++  N   S+V G V  +   G  V 
Sbjct: 418 VVLSIDAERERISLGIK--------QLTDDPFAQYVAANEKGSIVKGTVKAVDAKGATVE 469

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G+   S+    +  D S+   VG  V   I +++ +   I +S++
Sbjct: 470 LAENVEGYLRASEISRDRINDASQVLNVGDEVEGRITNIDRKNRSINVSVR 520



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 6/167 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFR 552
           ++ + G  + GK+ ++  FG  +   GG+  L  L  +S  E  +   + F  G EL   
Sbjct: 359 TNYQKGDRISGKIKSITDFGIFIGLEGGIDGLVHLSDISWEEAGEDAVRNFNKGDELETV 418

Query: 553 VLGVKSKRITVTHK-KTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQ 610
           VL + ++R  ++   K L     A    Y  A ++  I  G +  ++  G  V     V+
Sbjct: 419 VLSIDAERERISLGIKQLTDDPFA---QYVAANEKGSIVKGTVKAVDAKGATVELAENVE 475

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           G+   SE+  D   + S + +VG  V+ RI +    +R IN+S   K
Sbjct: 476 GYLRASEISRDRINDASQVLNVGDEVEGRITNIDRKNRSINVSVRAK 522



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 132/354 (37%), Gaps = 39/354 (11%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE++QEGMV+   VK++ D+G  +  G     G L   ++A    ++    V+ G  ++ 
Sbjct: 186 LESLQEGMVVKGIVKNLTDYGAFVDLG--GIDGLLHITDMAWKRIKHPSEIVEVGQEIEV 243

Query: 283 VVRSIDRTRKVV-----YLSSDP--DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
            V   DR +  V      L  DP  D V K                G  V  RV ++ + 
Sbjct: 244 KVLKFDREKMRVSLGLKQLGEDPWHDIVQK-------------YPEGARVKARVTNLTDY 290

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL---- 391
           G          G V +  +  T    +         +V   IL +D   R + L +    
Sbjct: 291 GCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVEIGDEVEVMILDIDEDRRRISLGIKQCL 350

Query: 392 -NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
            NP+     A  ++ + GD          D G+ + L+     +   + ++  +  E+ V
Sbjct: 351 SNPW----EAFATNYQKGDRISGKIKSITDFGIFIGLEGGIDGLVHLSDISWEEAGEDAV 406

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
           R    K  E   V + I   R    L    L    F   V  +   + G +VKG V AVD
Sbjct: 407 RNF-NKGDELETVVLSIDAERERISLGIKQLTDDPFAQYVAAN---EKGSIVKGTVKAVD 462

Query: 511 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           + GA V+    V+       +S   I    +   VG E+  R+  +  K  ++ 
Sbjct: 463 AKGATVELAENVEGYLRASEISRDRINDASQVLNVGDEVEGRITNIDRKNRSIN 516


>gi|424780259|ref|ZP_18207139.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
 gi|422843217|gb|EKU27658.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
          Length = 394

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK- 559
           V+ GKV  +  FGA V   GGV  L  +  ++   + KP  + KVG E+  ++L V  + 
Sbjct: 204 VLTGKVARLTDFGAFVDL-GGVDGLVHVSEIAHHHVAKPSDELKVGDEVTVKILSVDPEE 262

Query: 560 -RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
            R++++ K T  K     L+      D L   G + ++   G FV  + GV+G    S++
Sbjct: 263 GRVSLSMKATQ-KGPWEKLADEVAVGDVL--EGVVKRLTDFGAFVEIFPGVEGLVHISQI 319

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
                  P  +   GQ VK +++   PA RRI LS 
Sbjct: 320 SHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSL 355



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 58/351 (16%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR------- 660
           GV+G  P  EL   P  +   +  VG V+   ++S+I  S + N ++++   R       
Sbjct: 49  GVEGVIPSRELSTLPFEKIEDIVKVGDVLDLVVISTI--SDKENGNYLLSKRRLDAKKAW 106

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           V  ++  K   +V G V  V    +VV +  +G+   ++ T+H   +++  +  K  + P
Sbjct: 107 VDIEEKFKNNEIVEGKVTDVVRGGLVVDLGVRGFVPASMITDH---YIKDFSEYKGRVLP 163

Query: 721 GYEFDQLLVLDNE-SSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGC 777
                 L +++ E S N L+ +  +++N  ++         +  + V+ G V  + + G 
Sbjct: 164 ------LKIMEIEPSENRLILSHVAVMNEEKEEARQKRLQELVADEVLTGKVARLTDFGA 217

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV  LG + G    S+      A  S    VG  V   IL V+ E GR++LS+K +    
Sbjct: 218 FVD-LGGVDGLVHVSEIAHHHVAKPSDELKVGDEVTVKILSVDPEEGRVSLSMKAT---- 272

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                                    G   K  +   +G V+EG V    DFG  V     
Sbjct: 273 -----------------------QKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEI--F 307

Query: 898 SDVYGF-----ITHHQLAG--ATVESGSVIQAAILDVAKAERLVDLSLKTV 941
             V G      I+H  +A     ++ G  ++  +LD+  AER + LSLK +
Sbjct: 308 PGVEGLVHISQISHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSLKAL 358



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 145/350 (41%), Gaps = 27/350 (7%)

Query: 495 DVKPGMVVKGKVIAV-DSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +V  G  VKG+V+++ D    IV   G GV+ + P   +S     K     KVG  L   
Sbjct: 21  EVSVGDTVKGEVLSIQDGKQVIVGIEGAGVEGVIPSRELSTLPFEKIEDIVKVGDVLDLV 80

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V+   S +    +   L K +L    ++ +  ++     I  G +T + + G  V    G
Sbjct: 81  VISTISDKENGNY--LLSKRRLDAKKAWVDIEEKFKNNEIVEGKVTDVVRGGLVVDL--G 136

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
           V+GF P S +  D   +  S Y  G+V+  +IM   P+  R+ LS +       E+   K
Sbjct: 137 VRGFVPASMI-TDHYIKDFSEYK-GRVLPLKIMEIEPSENRLILSHVAVMNEEKEEARQK 194

Query: 669 -LGSLV-----SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            L  LV     +G V  +T     V +   G   G +    +A H  H       +K G 
Sbjct: 195 RLQELVADEVLTGKVARLTDFGAFVDL---GGVDGLVHVSEIAHH--HVAKPSDELKVGD 249

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           E   ++L +D E   + LS K +     ++L   A  +    V+ G V  + + G FV  
Sbjct: 250 EVTVKILSVDPEEGRVSLSMKATQKGPWEKL---ADEVAVGDVLEGVVKRLTDFGAFVEI 306

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + G    S+      A   +    GQ V+  +LD+N    RI LSLK
Sbjct: 307 FPGVEGLVHISQISHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSLK 356



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 7/118 (5%)

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
            ++++L  + ++ G V  +T  G F+ L   +D  V +S ++  +V  P  E  +G  V  
Sbjct: 195  RLQELVADEVLTGKVARLTDFGAFVDLG-GVDGLVHVSEIAHHHVAKPSDELKVGDEVTV 253

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITI 1488
            ++LSV+P   RV +++K +      +     L++ + VGD++ G +KR+  +G F+ I
Sbjct: 254  KILSVDPEEGRVSLSMKAT-----QKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEI 306



 Score = 43.9 bits (102), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 139/339 (41%), Gaps = 47/339 (13%)

Query: 410 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           I D  +V+    G G+   IPS  +ST  +  I D+            K G  + + ++ 
Sbjct: 35  IQDGKQVIVGIEGAGVEGVIPSRELSTLPFEKIEDIV-----------KVGDVLDLVVIS 83

Query: 470 FRHLEGLATGIL---KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
               +     +L   +  A +  V      K   +V+GKV  V   G +V    GV+   
Sbjct: 84  TISDKENGNYLLSKRRLDAKKAWVDIEEKFKNNEIVEGKVTDVVRGGLVVDL--GVRGFV 141

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE---- 582
           P   +++  I    K F   +E   RVL +K   I  +  + L+ S +A+++   E    
Sbjct: 142 PASMITDHYI----KDF---SEYKGRVLPLKIMEIEPSENR-LILSHVAVMNEEKEEARQ 193

Query: 583 ------ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
                   D ++T G + ++   G FV    GV G    SE+      +PS    VG  V
Sbjct: 194 KRLQELVADEVLT-GKVARLTDFGAFVDL-GGVDGLVHVSEIAHHHVAKPSDELKVGDEV 251

Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSE----DDLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
             +I+S  P   R++LS  MK T+        D V +G ++ GVV  +T     V +   
Sbjct: 252 TVKILSVDPEEGRVSLS--MKATQKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEIFPG 309

Query: 693 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 731
              +G +    ++   +H      V+KPG E  ++ VLD
Sbjct: 310 --VEGLVHISQISH--KHIATPHEVLKPGQEV-KVKVLD 343


>gi|268572137|ref|XP_002641244.1| Hypothetical protein CBG09112 [Caenorhabditis briggsae]
          Length = 1717

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 123/547 (22%), Positives = 219/547 (40%), Gaps = 86/547 (15%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKK------NKKKKKKTERKANETVDDL 107
           FPRGGG    +  ++              +GL +K      N  KK K E      VDD 
Sbjct: 13  FPRGGGSDRPKPTKEGFPT----------KGLKRKSAVPEQNDAKKAKEESSWIPKVDD- 61

Query: 108 GSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGG----LRGLARA 163
              F DG++G                     GVVAE+ +  +++   G     +     +
Sbjct: 62  ---FIDGLTG--------------------LGVVAELFDDGVLLHTAGTHTVKIHAAEVS 98

Query: 164 ADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL--QLDDDKKEIGKRKIWLSLRLSLL 221
           A+  D   +N+IE      +   F +GQ+V   V+  +  +DK   G+ K   S   + L
Sbjct: 99  ANFTDLFNENKIE------IKDAFQIGQMVPFRVISKKSGNDK---GRSKA--SCNPARL 147

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQ 281
            K LS   +  G+V+   V S+E+ G IL  GL   TGF+ ++         ++ G  L 
Sbjct: 148 NKHLSPNMLVAGLVIHTAVTSLEEKGAILDVGLDQMTGFIEKSQF---PAAGLREGQPL- 203

Query: 282 GVVRSIDRTRKVVYLSS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENG 336
            VVR +  T +VV ++S    D   +S C     + + ++ L+PG ++        +  G
Sbjct: 204 -VVRVLSTTSRVVKVTSFVEQDNLNMSSC-----EKLQLNHLMPGTILECEPTGDAVTAG 257

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL- 395
           V+++      G +     +   P    +N     K + A ++F    S+ + L  +P + 
Sbjct: 258 VIVNIGNGLKGILP----RRNLPPRLRENPEKLGKAIRAVVMFCQQNSKVLVLNAHPDIV 313

Query: 396 ----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEV 450
               +  R     +++GD    + V  +     +   +P T         +S     E+ 
Sbjct: 314 AVSRVEKRTSFEGIQIGDKVQCTVVDVIPTKSIVYFTLPPTDGKKSLVTAVSSRGLLEKP 373

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
             +  +Y+ G+    R+ GFR+ +   T   +       +  + D K G V+  +V  V 
Sbjct: 374 DSVATEYEVGTEKFCRVTGFRYADRAITVSTRKDILNQKITKYQDAKCGDVLDARVHHVA 433

Query: 511 SFGAIVQFPGGVKALCPLPHMSE--FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
             G        V+A  P+  +S+    + K   KF+VG E   RV  +  + K + VT +
Sbjct: 434 KNGVYFSVCNFVQAFAPMSLLSDKSLNLQKLKAKFQVGTETKCRVWQICDQRKNLIVTCR 493

Query: 567 KTLVKSK 573
           + ++  K
Sbjct: 494 EQIIALK 500


>gi|417897022|ref|ZP_12540965.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21235]
 gi|341840288|gb|EGS81808.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21235]
          Length = 391

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLTNFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 169/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LTNFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLTNFGAFVEI 298



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 94/204 (46%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  +T+ G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLTNFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|389581381|ref|ZP_10171408.1| ribosomal protein S1 [Desulfobacter postgatei 2ac9]
 gi|389403016|gb|EIM65238.1| ribosomal protein S1 [Desulfobacter postgatei 2ac9]
          Length = 596

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 156/369 (42%), Gaps = 34/369 (9%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T S ++   V++G V  +  +G  V   GGV  L  +  +S   +  P + F VG  +  
Sbjct: 215 TLSAIENDKVMEGIVKNITEYGVFVDL-GGVDGLLHITDISWGRVKHPSELFSVGDHIKV 273

Query: 552 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           ++L    + +R+++  K+            Y   +      G +  +  +G F+    GV
Sbjct: 274 KILSFDFEKERVSLGMKQLTPDPWTTAADKYPIGSK---IKGRVVSLTDYGAFIELEEGV 330

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
           +G    SE+        PS M  VG+ V+  ++   P +RRI+L   +K T  +  +++ 
Sbjct: 331 EGLIHVSEMSWTRKIRHPSQMVAVGEQVEAVVLDLKPENRRISLG--IKQTVENPWEVIS 388

Query: 669 ----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
               +G+++ G +  +T   + +     G         H++D      ++H     S I 
Sbjct: 389 QKYPVGTIIEGKIKNITEFGLFI-----GIDDDIDGLVHISDISWTKRIKHP----SEIY 439

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSD--ASHIHPNSVVHGYVCNIIETG 776
              +  Q +VLD + +N     ++SL I   Q  P +  A        + G + N+ + G
Sbjct: 440 KKNDTIQAVVLDIDKAN----ERFSLGIKQTQVDPWETVAERYDVGKEISGVITNLTDFG 495

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            FV     + G    S+            Y +G+++ + ++++NS+  RI LS+K+    
Sbjct: 496 VFVELEEGIEGLVHVSEISKENIKSPKDHYQIGETITAKVMNINSDERRIGLSIKRLNED 555

Query: 837 STDASFMQE 845
             D  +++E
Sbjct: 556 DDDNRYLEE 564



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 174/424 (41%), Gaps = 76/424 (17%)

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNI 772
            M  ++   Y F ++L  + + +N++LS +  L N  +++ S   S I  + V+ G V NI
Sbjct: 174  MDEMVGQTYTF-KILKYNKKRNNIVLSRRVLLENEREKMRSATLSAIENDKVMEGIVKNI 232

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             E G FV  LG + G    +    G+    S+ + VG  ++  IL  + E  R++L +KQ
Sbjct: 233  TEYGVFVD-LGGVDGLLHITDISWGRVKHPSELFSVGDHIKVKILSFDFEKERVSLGMKQ 291

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                    +                            + + IGS I+G+V    D+G  +
Sbjct: 292  LTPDPWTTA---------------------------ADKYPIGSKIKGRVVSLTDYGAFI 324

Query: 893  SFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
              EE   V G I   +++           V  G  ++A +LD+    R + L +K   ++
Sbjct: 325  ELEEG--VEGLIHVSEMSWTRKIRHPSQMVAVGEQVEAVVLDLKPENRRISLGIKQT-VE 381

Query: 945  RFREANSNRQ------AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 998
               E  S +         K K   E    +G+   ++ +V I                  
Sbjct: 382  NPWEVISQKYPVGTIIEGKIKNITEFGLFIGIDDDIDGLVHI------------------ 423

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK 1058
             + +S     K P + +    ++ A V+ +  ++    L +    +   ET + +     
Sbjct: 424  -SDISWTKRIKHPSEIYKKNDTIQAVVLDIDKANERFSLGIKQTQVDPWETVAER----- 477

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
              YDVG  +   IT +    + ++   G  G +H++E++  K N +++   +++IG+T+T
Sbjct: 478  --YDVGKEISGVITNLTDFGVFVELEEGIEGLVHVSEIS--KEN-IKSPKDHYQIGETIT 532

Query: 1119 ARII 1122
            A+++
Sbjct: 533  AKVM 536



 Score = 47.4 bits (111), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 99/498 (19%), Positives = 201/498 (40%), Gaps = 99/498 (19%)

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 661
            G+  F P S+  L P      M  VGQ    +I+      ++I  SRR+ L    +  R 
Sbjct: 156  GLLAFLPGSQADLRPIRNMDEM--VGQTYTFKILKYNKKRNNIVLSRRVLLENEREKMRS 213

Query: 662  SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSV 717
            +    ++   ++ G+V  +T   V V +   G   G +   H+ D     ++H + + SV
Sbjct: 214  ATLSAIENDKVMEGIVKNITEYGVFVDL---GGVDGLL---HITDISWGRVKHPSELFSV 267

Query: 718  ---IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHP-NSVVHGYV 769
               IK      ++L  D E   + L  K        QL  D    A+  +P  S + G V
Sbjct: 268  GDHIKV-----KILSFDFEKERVSLGMK--------QLTPDPWTTAADKYPIGSKIKGRV 314

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITL 828
             ++ + G F+     + G    S+    ++    S+   VG+ V + +LD+  E  RI+L
Sbjct: 315  VSLTDYGAFIELEEGVEGLIHVSEMSWTRKIRHPSQMVAVGEQVEAVVLDLKPENRRISL 374

Query: 829  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
             +KQ+  +  +        ++ +K                   + +G++IEGK+    +F
Sbjct: 375  GIKQTVENPWE--------VISQK-------------------YPVGTIIEGKIKNITEF 407

Query: 889  GVVVSFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKT 940
            G+ +  ++  D+ G +    ++            +    IQA +LD+ KA     L +K 
Sbjct: 408  GLFIGIDD--DIDGLVHISDISWTKRIKHPSEIYKKNDTIQAVVLDIDKANERFSLGIKQ 465

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
              +D +                  ++   V + ++ ++  + +  + + L E    + + 
Sbjct: 466  TQVDPW---------------ETVAERYDVGKEISGVITNLTDFGVFVELEEGIEGLVHV 510

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS-----KRA 1055
            S       K P+  +  G+++ A VM + S     R+ L +K ++E +  +       ++
Sbjct: 511  SEISKENIKSPKDHYQIGETITAKVMNINSDER--RIGLSIKRLNEDDDDNRYLEEIAKS 568

Query: 1056 KKKSSYDVGSLVQAEITE 1073
             K ++   G ++++ I E
Sbjct: 569  SKPAASAFGEMLRSNIQE 586



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 9/116 (7%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +  + +++G VKN+T  G F+ L   +D  + ++++S G V+ P + F +G  +  ++LS
Sbjct: 219  IENDKVMEGIVKNITEYGVFVDLG-GVDGLLHITDISWGRVKHPSELFSVGDHIKVKILS 277

Query: 1436 VEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +   +RV + +K  T D  T +  +        +G  + G++  +  YG FI +E
Sbjct: 278  FDFEKERVSLGMKQLTPDPWTTAADK------YPIGSKIKGRVVSLTDYGAFIELE 327



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 7/111 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++G V ++T  G FI L   ++  + +S +S    +  P +   +G+ V   VL ++P +
Sbjct: 310  IKGRVVSLTDYGAFIELEEGVEGLIHVSEMSWTRKIRHPSQMVAVGEQVEAVVLDLKPEN 369

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1490
            +R+ + +K +      ++    +S  + VG I+ G+IK +  +GLFI I++
Sbjct: 370  RRISLGIKQT-----VENPWEVISQKYPVGTIIEGKIKNITEFGLFIGIDD 415


>gi|418284069|ref|ZP_12896801.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21202]
 gi|365164933|gb|EHM56763.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21202]
          Length = 391

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHISGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 47.8 bits (112), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 169/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHISGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373



 Score = 47.4 bits (111), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 111/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I+ G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-ISGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|422743961|ref|ZP_16797939.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|320142721|gb|EFW34524.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 398

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 18  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 77

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 78  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 135

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 136 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 191

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 192 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 246

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 247 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 303

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 304 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 358



 Score = 47.8 bits (112), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 20  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 78

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 79  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 138

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 139 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 176

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 177 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 224

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 225 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 281

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 282 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 336

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 337 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 376



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 20  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 76

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 77  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 124

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 125 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 180

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 181 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 217

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 218 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 269



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 195  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 253

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 254  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 305



 Score = 40.4 bits (93), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 188  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 244

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 245  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 275

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 276  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 333

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 334  QQVNVKILGIDEENERVSLSIKAT 357


>gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
 gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
          Length = 410

 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I++A   E      + ++PG VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 183 IVQAQHEEAAKEIFAKLQPGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 241

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
               + G E+  +VL V  + +RI+++ K+TL      I     E +   +  G + ++ 
Sbjct: 242 SDVLEAGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAPEGS---VLTGTVKRLT 298

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 299 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSM 355



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 137/350 (39%), Gaps = 55/350 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDVQKKFDAGEHITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
           G E +  ++    S N L+ +   ++ +  +  +    + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAKLQPGDVVEGKVARMTNFGAF 218

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    S+         S     GQ V+  +L+V+ E  RI+LS+KQ+     
Sbjct: 219 ID-LGGVDGLVHVSEISYDHVDKPSDVLEAGQEVKVKVLNVDPERERISLSIKQTLPGPW 277

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +EEK                      GSV+ G V     FG  V  E   
Sbjct: 278 DD--------IEEKAPE-------------------GSVLTGTVKRLTSFGAFV--EVFP 308

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V G      I+H  +A     ++ G  ++  +L+V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSMKAL 358



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 150/351 (42%), Gaps = 30/351 (8%)

Query: 496 VKPGMVVKGKVIAVDS-FGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 554 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           +       ++    ++H++   +     +    +A + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDVQKKFDAGEHITAK--VTQAVKGGLVVDA--G 136

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 664
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +    +++
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKE 194

Query: 665 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 721
              KL  G +V G V  +T     + +   G   G +    ++ DH++  +    V++ G
Sbjct: 195 IFAKLQPGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISYDHVDKPS---DVLEAG 248

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            E   ++L +D E   + LS K +L      +   A      SV+ G V  +   G FV 
Sbjct: 249 QEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAPE---GSVLTGTVKRLTSFGAFVE 305

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+      A  +     GQ V+  +L+V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSMK 356



 Score = 47.8 bits (112), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L P  +V+G V  +T+ G FI L   +D  V +S +S  +V+ P      G+ V  +VL+
Sbjct: 199  LQPGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPSDVLEAGQEVKVKVLN 257

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V+P  +R+ +++K +        E         G ++ G +KR+ S+G F+ +
Sbjct: 258  VDPERERISLSIKQTLPGPWDDIE----EKAPEGSVLTGTVKRLTSFGAFVEV 306



 Score = 44.7 bits (104), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 38/207 (18%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  GD+V G+++++ +   G  + +G  + G VH +E+    V  P         D L  
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYDHVDKP--------SDVLEA 247

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQEVKVKVLNVDPERE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1377 SPN-MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P   ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+
Sbjct: 284  APEGSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLN 343

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINN 1462
            V+P  +R+ +++K  + R   + E NN
Sbjct: 344  VDPEHQRLGLSMKALEER--PKDEENN 368


>gi|416841185|ref|ZP_11904247.1| 30S ribosomal protein S1 [Staphylococcus aureus O11]
 gi|416847530|ref|ZP_11907212.1| 30S ribosomal protein S1 [Staphylococcus aureus O46]
 gi|323439521|gb|EGA97242.1| 30S ribosomal protein S1 [Staphylococcus aureus O11]
 gi|323442240|gb|EGA99871.1| 30S ribosomal protein S1 [Staphylococcus aureus O46]
          Length = 391

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRMANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 48.5 bits (114), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 169/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----MANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRMANFGAFVEI 298



 Score = 40.8 bits (94), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRMANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|21283094|ref|NP_646182.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MW2]
 gi|49486315|ref|YP_043536.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650431|ref|YP_186360.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus COL]
 gi|87162219|ref|YP_494062.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195210|ref|YP_500011.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221597|ref|YP_001332419.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509643|ref|YP_001575302.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140957|ref|ZP_03565450.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253733277|ref|ZP_04867442.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451134|ref|ZP_05699169.1| ribosomal protein S1 [Staphylococcus aureus A5948]
 gi|262048998|ref|ZP_06021877.1| 30S ribosomal protein S1 [Staphylococcus aureus D30]
 gi|262051645|ref|ZP_06023865.1| 30S ribosomal protein S1 [Staphylococcus aureus 930918-3]
 gi|282921723|ref|ZP_06329440.1| 30S ribosomal protein S1 [Staphylococcus aureus A9765]
 gi|284024474|ref|ZP_06378872.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 132]
 gi|294848439|ref|ZP_06789185.1| 30S ribosomal protein S1 [Staphylococcus aureus A9754]
 gi|300911950|ref|ZP_07129393.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380941|ref|ZP_07363600.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|379014685|ref|YP_005290921.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VC40]
 gi|384862077|ref|YP_005744797.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|384870017|ref|YP_005752731.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           T0131]
 gi|387143084|ref|YP_005731477.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|415687445|ref|ZP_11451320.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|417650486|ref|ZP_12300256.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21189]
 gi|417897857|ref|ZP_12541783.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21259]
 gi|417901332|ref|ZP_12545208.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21266]
 gi|418277089|ref|ZP_12891770.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21178]
 gi|418284531|ref|ZP_12897251.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21209]
 gi|418312024|ref|ZP_12923537.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21334]
 gi|418316501|ref|ZP_12927939.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21340]
 gi|418318773|ref|ZP_12930166.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21232]
 gi|418570518|ref|ZP_13134785.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21283]
 gi|418579335|ref|ZP_13143430.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1114]
 gi|418600354|ref|ZP_13163818.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21343]
 gi|418641957|ref|ZP_13204162.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-24]
 gi|418646858|ref|ZP_13208949.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-88]
 gi|418650368|ref|ZP_13212386.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-91]
 gi|418659740|ref|ZP_13221399.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-111]
 gi|418871264|ref|ZP_13425645.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-125]
 gi|418903716|ref|ZP_13457757.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1770]
 gi|418906419|ref|ZP_13460445.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC345D]
 gi|418912086|ref|ZP_13466067.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG547]
 gi|418925738|ref|ZP_13479640.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG2018]
 gi|418928760|ref|ZP_13482646.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1612]
 gi|418934383|ref|ZP_13488205.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC128]
 gi|418947101|ref|ZP_13499491.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-157]
 gi|418955698|ref|ZP_13507635.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-189]
 gi|418988481|ref|ZP_13536153.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1835]
 gi|419773589|ref|ZP_14299590.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CO-23]
 gi|422746301|ref|ZP_16800234.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|424785312|ref|ZP_18212115.1| SSU ribosomal protein S1p [Staphylococcus aureus CN79]
 gi|440707470|ref|ZP_20888169.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21282]
 gi|440734926|ref|ZP_20914537.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus DSM
           20231]
 gi|448741640|ref|ZP_21723601.1| 30S ribosomal protein S1 [Staphylococcus aureus KT/314250]
 gi|448742924|ref|ZP_21724838.1| 30S ribosomal protein S1 [Staphylococcus aureus KT/Y21]
 gi|81649285|sp|Q6G987.1|RS1_STAAS RecName: Full=30S ribosomal protein S1
 gi|81694467|sp|Q5HFU7.1|RS1_STAAC RecName: Full=30S ribosomal protein S1
 gi|81762485|sp|Q8NWM8.1|RS1_STAAW RecName: Full=30S ribosomal protein S1
 gi|21204534|dbj|BAB95230.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244758|emb|CAG43194.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57284617|gb|AAW36711.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus COL]
 gi|87128193|gb|ABD22707.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202768|gb|ABD30578.1| 30S ribosomal protein S1, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374397|dbj|BAF67657.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368452|gb|ABX29423.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728817|gb|EES97546.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861189|gb|EEV84002.1| ribosomal protein S1 [Staphylococcus aureus A5948]
 gi|259160486|gb|EEW45510.1| 30S ribosomal protein S1 [Staphylococcus aureus 930918-3]
 gi|259162930|gb|EEW47493.1| 30S ribosomal protein S1 [Staphylococcus aureus D30]
 gi|269940967|emb|CBI49351.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282593985|gb|EFB98974.1| 30S ribosomal protein S1 [Staphylococcus aureus A9765]
 gi|294824465|gb|EFG40888.1| 30S ribosomal protein S1 [Staphylococcus aureus A9754]
 gi|300886196|gb|EFK81398.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751306|gb|ADL65483.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340527|gb|EFM06462.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315197777|gb|EFU28111.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140352|gb|EFW32208.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|329314152|gb|AEB88565.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723178|gb|EGG59709.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21189]
 gi|341845171|gb|EGS86373.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21266]
 gi|341849359|gb|EGS90502.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21259]
 gi|365173391|gb|EHM63959.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21209]
 gi|365173879|gb|EHM64313.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21178]
 gi|365239146|gb|EHM79968.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21334]
 gi|365241185|gb|EHM81940.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21340]
 gi|365242115|gb|EHM82837.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21232]
 gi|371983994|gb|EHP01125.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21283]
 gi|374363382|gb|AEZ37487.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VC40]
 gi|374394295|gb|EHQ65582.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21343]
 gi|375018412|gb|EHS11992.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-24]
 gi|375027654|gb|EHS21012.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-91]
 gi|375031876|gb|EHS25137.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-88]
 gi|375034387|gb|EHS27551.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-111]
 gi|375368733|gb|EHS72641.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-125]
 gi|375370784|gb|EHS74582.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-189]
 gi|375376866|gb|EHS80375.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-157]
 gi|377697362|gb|EHT21717.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1114]
 gi|377717574|gb|EHT41749.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1835]
 gi|377722343|gb|EHT46469.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG547]
 gi|377738672|gb|EHT62681.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1612]
 gi|377742731|gb|EHT66716.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1770]
 gi|377744807|gb|EHT68784.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG2018]
 gi|377763324|gb|EHT87180.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC345D]
 gi|377770477|gb|EHT94238.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC128]
 gi|383972649|gb|EID88680.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CO-23]
 gi|421956722|gb|EKU09051.1| SSU ribosomal protein S1p [Staphylococcus aureus CN79]
 gi|436431021|gb|ELP28375.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus DSM
           20231]
 gi|436506226|gb|ELP42065.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21282]
 gi|445547607|gb|ELY15872.1| 30S ribosomal protein S1 [Staphylococcus aureus KT/314250]
 gi|445563611|gb|ELY19768.1| 30S ribosomal protein S1 [Staphylococcus aureus KT/Y21]
          Length = 391

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 47.4 bits (111), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|328951609|ref|YP_004368944.1| RNA binding S1 domain-containing protein [Marinithermus
            hydrothermalis DSM 14884]
 gi|328451933|gb|AEB12834.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
            14884]
          Length = 551

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 195/466 (41%), Gaps = 69/466 (14%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            ++ G L+ G V  V    V V V AK   +G IP   L D       +K++++PG E + 
Sbjct: 44   IRRGQLIKGTVVFVGNEGVAVDVGAK--VEGIIPFNQLTDEPLSEEELKNLLQPGDEVEV 101

Query: 727  LLVLDNESSN-LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
             +V  + S N ++LS K +  + A +       ++ N             G  V ++  L
Sbjct: 102  YVVRVDLSENAIVLSKKRADADKAWR---KVVELYENGEPVEVTIREKVRGGLVTYIEGL 158

Query: 786  TGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
              F P S+ VD +R  DL    +VGQ++   I++++ + GRI LS +             
Sbjct: 159  RAFLPASQ-VDIKRVNDLDG--FVGQTLPVKIIELSRKKGRIILSRR------------- 202

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD----- 899
               LLEE+   L+         + ++    G  +EG V E  +FGV V+   H D     
Sbjct: 203  --VLLEEEQKRLRQ--------QVLQSLEPGQEVEGAVVEVTEFGVFVNL-GHIDGLVHR 251

Query: 900  ---VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
                +G   H +     V+ G  ++A +L V      V+LS+K +  D +   +   +  
Sbjct: 252  SELTWGRFEHPR---EVVQVGDQVRARVLSVDPERERVNLSIKALTPDPWETVSERYEVG 308

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
            ++ R     K +G+     A +E+          P     I  + +S     K P +   
Sbjct: 309  QRVR----GKVVGL-TPFGAFLEVE---------PGLEGLIHVSEMSWTKRPKHPSEVLK 354

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             G+ V A V+ +     A RL L L+     +T      +    Y  G++++ +IT +  
Sbjct: 355  EGEEVEAVVLRI--DPEARRLSLGLR-----QTMPDPWKELPEKYPPGTVIKGKITGVTE 407

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
              + ++   G  G +HI+E++  +   +EN    FK G+ +   I+
Sbjct: 408  FGVFVELEPGIEGLVHISELDYAR---IENPAEQFKKGEELEVVIL 450



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 18/203 (8%)

Query: 460 GSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
           G  VR R+L     R    L+   L    +E  V    +V  G  V+GKV+ +  FGA +
Sbjct: 269 GDQVRARVLSVDPERERVNLSIKALTPDPWE-TVSERYEV--GQRVRGKVVGLTPFGAFL 325

Query: 517 QFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570
           +   G++ L    H+SE    K    P +  K G E+   VL +  +++R+++  ++T+ 
Sbjct: 326 EVEPGLEGLI---HVSEMSWTKRPKHPSEVLKEGEEVEAVVLRIDPEARRLSLGLRQTMP 382

Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
                +   Y   T   +  G IT + + G FV    G++G    SEL       P+  +
Sbjct: 383 DPWKELPEKYPPGT---VIKGKITGVTEFGVFVELEPGIEGLVHISELDYARIENPAEQF 439

Query: 631 HVGQVVKCRIMSSIPASRRINLS 653
             G+ ++  I+   P  +RI+LS
Sbjct: 440 KKGEELEVVILQIDPVEQRISLS 462



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 126/282 (44%), Gaps = 23/282 (8%)

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           S+R+ +  ++  ++ +  +L S     +     G + ++ + G FV   + + G   RSE
Sbjct: 200 SRRVLLEEEQKRLRQQ--VLQSLEPGQE---VEGAVVEVTEFGVFVNLGH-IDGLVHRSE 253

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKP---TRVSEDDLVKLGSLV 673
           L       P  +  VG  V+ R++S  P   R+NLS   + P     VSE    ++G  V
Sbjct: 254 LTWGRFEHPREVVQVGDQVRARVLSVDPERERVNLSIKALTPDPWETVSER--YEVGQRV 311

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQ-LLVL 730
            G V  +TP    + V  +   +G I    ++     +H +    V+K G E +  +L +
Sbjct: 312 RGKVVGLTPFGAFLEV--EPGLEGLIHVSEMSWTKRPKHPS---EVLKEGEEVEAVVLRI 366

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
           D E+  L L  + ++ +  ++LP       P +V+ G +  + E G FV     + G   
Sbjct: 367 DPEARRLSLGLRQTMPDPWKELP---EKYPPGTVIKGKITGVTEFGVFVELEPGIEGLVH 423

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            S+    +  + ++ +  G+ +   IL ++    RI+LS K+
Sbjct: 424 ISELDYARIENPAEQFKKGEELEVVILQIDPVEQRISLSRKR 465



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 44/240 (18%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
             +G  V   VLS++ E++ + L ++            ++ D  +T + E   VG R+   
Sbjct: 267  QVGDQVRARVLSVDPERERVNLSIK-----------ALTPDPWET-VSERYEVGQRVRGK 314

Query: 1271 LSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
            + G+   G  +++ P L G +H +E+           + +    P     EG+ V+  VL
Sbjct: 315  VVGLTPFGAFLEVEPGLEGLIHVSEM----------SWTKRPKHPSEVLKEGEEVEAVVL 364

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
             I    R    + L LR ++                 P    E  E   P  +++G +  
Sbjct: 365  RIDPEAR---RLSLGLRQTM-----------------PDPWKELPEKYPPGTVIKGKITG 404

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            VT  G F+ L   ++  V +S L    +E+P ++F  G+ +   +L ++P+ +R+ ++ K
Sbjct: 405  VTEFGVFVELEPGIEGLVHISELDYARIENPAEQFKKGEELEVVILQIDPVEQRISLSRK 464



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 8/77 (10%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE---IVKPGKKFKVGAELVFRVL 554
           PG V+KGK+  V  FG  V+   G++ L    H+SE +   I  P ++FK G EL   +L
Sbjct: 394 PGTVIKGKITGVTEFGVFVELEPGIEGLV---HISELDYARIENPAEQFKKGEELEVVIL 450

Query: 555 GVK--SKRITVTHKKTL 569
            +    +RI+++ K+ L
Sbjct: 451 QIDPVEQRISLSRKRLL 467



 Score = 43.9 bits (102), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG  V+G V+ V  FG  V   G +  L     ++      P +  +VG ++  RVL 
Sbjct: 220 LEPGQEVEGAVVEVTEFGVFVNL-GHIDGLVHRSELTWGRFEHPREVVQVGDQVRARVLS 278

Query: 556 VKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           V  +R  V    K L       +S   E   R+   G +  +   G F+    G++G   
Sbjct: 279 VDPERERVNLSIKALTPDPWETVSERYEVGQRV--RGKVVGLTPFGAFLEVEPGLEGLIH 336

Query: 615 RSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            SE+      + PS +   G+ V+  ++   P +RR++L  
Sbjct: 337 VSEMSWTKRPKHPSEVLKEGEEVEAVVLRIDPEARRLSLGL 377


>gi|282916743|ref|ZP_06324501.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus D139]
 gi|283770548|ref|ZP_06343440.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus H19]
 gi|384547716|ref|YP_005736969.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|384550237|ref|YP_005739489.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|385781700|ref|YP_005757871.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           11819-97]
 gi|387780575|ref|YP_005755373.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus LGA251]
 gi|417654370|ref|ZP_12304093.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21193]
 gi|417797507|ref|ZP_12444703.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21305]
 gi|417905365|ref|ZP_12549176.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21269]
 gi|418572880|ref|ZP_13137082.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21333]
 gi|418645385|ref|ZP_13207510.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-55]
 gi|421150493|ref|ZP_15610149.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           Newbould 305]
 gi|443638795|ref|ZP_21122828.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21196]
 gi|282319230|gb|EFB49582.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus D139]
 gi|283460695|gb|EFC07785.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus H19]
 gi|298694765|gb|ADI97987.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333086|gb|ADL23279.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|329731355|gb|EGG67721.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21193]
 gi|334266999|gb|EGL85469.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21305]
 gi|341843641|gb|EGS84863.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21269]
 gi|344177677|emb|CCC88155.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus LGA251]
 gi|364522689|gb|AEW65439.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           11819-97]
 gi|371983812|gb|EHP00952.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21333]
 gi|375023453|gb|EHS16909.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-55]
 gi|394329883|gb|EJE55985.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           Newbould 305]
 gi|443408629|gb|ELS67147.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21196]
          Length = 391

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 169/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|253732118|ref|ZP_04866283.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724165|gb|EES92894.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 398

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 18  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 77

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 78  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 135

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 136 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 191

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 192 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 246

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 247 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 303

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 304 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 358



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 169/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 20  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 78

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 79  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 138

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 139 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 176

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 177 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 224

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 225 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 281

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 282 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 336

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 337 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 380



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 20  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 76

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 77  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 124

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 125 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 180

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 181 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 217

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 218 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 269



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 195  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 253

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 254  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 305



 Score = 40.4 bits (93), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 188  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 244

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 245  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 275

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 276  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 333

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 334  QQVNVKILGIDEENERVSLSIKAT 357


>gi|451812277|ref|YP_007448731.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium galatii TCC219]
 gi|451778179|gb|AGF49127.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium galatii TCC219]
          Length = 570

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 20/360 (5%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+AS  E       ++  G VVKG V  +  +GA +   GG+  L  +  M+   +  P
Sbjct: 182 VLEASMGEERQKLLENLYEGAVVKGVVKNITDYGAFIDL-GGIDGLLHITDMAWRRVRHP 240

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +V  E+  +VL    +  R+++  K+      + +   Y + T      G IT + 
Sbjct: 241 SEVLQVCQEIEAKVLKFDQEKNRVSLGVKQLGEDPWVDLARRYPQGTHLF---GKITNLT 297

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-M 655
            +G FV   +G++G    SE+   +   +P  +  +G+ V+  ++      RRI+L    
Sbjct: 298 DYGAFVEVESGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQ 357

Query: 656 MKPTRVSEDDL-VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHAT 712
            +P    E  +  K G  V G +  +T   V V     G   G     HL+D   +++  
Sbjct: 358 CRPNPWEEFAVNFKKGDKVKGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWVDNGE 412

Query: 713 VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
                +K G E + +++ +D     + L  K    +  Q   S  SH    S VHG V +
Sbjct: 413 ETVRNLKKGDEIEAVVLGIDTAKERISLGVKQLEGDPFQNFVS--SH-DKGSTVHGTVKS 469

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +   G  +     + G+   S+   G+  D +    VG ++ + I++V+ +T  I LS+K
Sbjct: 470 VESKGAVINLSLDVDGYLRSSEISSGRVEDATSMLKVGDTIEAIIVNVDRKTRSIQLSVK 529



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 135/310 (43%), Gaps = 45/310 (14%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPP-SHV--KVGDIYDQSKVVRVDR 421
           +++ A++L  D     V L +     +P++ L  R P  +H+  K+ ++ D    V V+ 
Sbjct: 248 QEIEAKVLKFDQEKNRVSLGVKQLGEDPWVDLARRYPQGTHLFGKITNLTDYGAFVEVES 307

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ +  E  V ++++        R RI LG +    
Sbjct: 308 GIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDED-------RRRISLGMKQC-- 358

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + + +E       + K G  VKG + ++  FG  V  PGG+  L    H+S+  
Sbjct: 359 ------RPNPWEEFAV---NFKKGDKVKGAIKSITDFGVFVGLPGGIDGLV---HLSDLS 406

Query: 536 IVKPG----KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
            V  G    +  K G E+   VLG+ +  +RI++  K+         +SS+ + +     
Sbjct: 407 WVDNGEETVRNLKKGDEIEAVVLGIDTAKERISLGVKQLEGDPFQNFVSSHDKGS---TV 463

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
           HG +  +E  G  +     V G+   SE+      + +SM  VG  ++  I++    +R 
Sbjct: 464 HGTVKSVESKGAVINLSLDVDGYLRSSEISSGRVEDATSMLKVGDTIEAIIVNVDRKTRS 523

Query: 650 INLSFMMKPT 659
           I LS   + T
Sbjct: 524 IQLSVKARDT 533


>gi|51473703|ref|YP_067460.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
 gi|383752480|ref|YP_005427580.1| 30S ribosomal protein S1 [Rickettsia typhi str. TH1527]
 gi|383843315|ref|YP_005423818.1| 30S ribosomal protein S1 [Rickettsia typhi str. B9991CWPP]
 gi|81390060|sp|Q68WL4.1|RS1_RICTY RecName: Full=30S ribosomal protein S1
 gi|51460015|gb|AAU03978.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
 gi|380759123|gb|AFE54358.1| 30S ribosomal protein S1 [Rickettsia typhi str. TH1527]
 gi|380759962|gb|AFE55196.1| 30S ribosomal protein S1 [Rickettsia typhi str. B9991CWPP]
          Length = 568

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 154/362 (42%), Gaps = 24/362 (6%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           IL+ S  E      S +K GM+++G V  +  +GA +   G V  L  L  +S   +  P
Sbjct: 186 ILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +   ++   V+    K+KRI++  K+       AI   +          G +T   
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301

Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            +G F+   +G++G    SE+  L     P  M  +GQ V+  ++       R++LS   
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359

Query: 657 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
              +  E+ L+K      +G+++   +  +T   +  +V+      G I    ++     
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
             ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQKI---SDEYKKGTIVKAVV 471

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             I + G  V    ++TGF  R +  D +     + + V + + + ++ +   TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLS 531

Query: 830 LK 831
           +K
Sbjct: 532 VK 533



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 136/612 (22%), Positives = 248/612 (40%), Gaps = 107/612 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR+ L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ GVV  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMILEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
            F+Q     ++  D ++  + L  K    N     P DA          + G V N  + G
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304

Query: 777  CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
             F+     L G    S+ +      +  K   +GQ V   +L+V++E  R++LS+KQ C 
Sbjct: 305  VFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C- 362

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                    QE+ L                 +K+ E   IG++I+  +    DFG+ V   
Sbjct: 363  --------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVLG 397

Query: 896  EHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             + D  G I    ++          + + G  I+  +L +   +  V L +K +  + ++
Sbjct: 398  NNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQ 455

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
            + +   +                   V A+V  +K++ LV+ L   N   G+    + + 
Sbjct: 456  KISDEYKK---------------GTIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELSD 498

Query: 1008 QKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDV 1063
            +K  QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++
Sbjct: 499  EKDEQKPEMFQVDEEIDAKVVSIEKST--GRVLLSVKAHKIAERQKTLKEYGSSDNTTNM 556

Query: 1064 GSLVQAEITEIK 1075
            G ++   + E K
Sbjct: 557  GDILANVLEEKK 568


>gi|345871228|ref|ZP_08823175.1| ribosomal protein S1 [Thiorhodococcus drewsii AZ1]
 gi|343920638|gb|EGV31367.1| ribosomal protein S1 [Thiorhodococcus drewsii AZ1]
          Length = 560

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 146/355 (41%), Gaps = 40/355 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA +   GG+  L  +  M+   +  P +  ++G E+  +VL
Sbjct: 188 NLEEGMEVKGVVKNLTDYGAFLDL-GGIDGLLHITDMAWRRVKHPSEVVEIGDEISVKVL 246

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               + +R+++  K+      + I   Y E+T      G +T I  +GCFV    GV+G 
Sbjct: 247 KFDRERQRVSLGLKQMGEDPWVNISRRYPESTR---VFGKVTNIADYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV- 667
              SE+   +    PS +  +G  V+  ++      RRI+L      M P     D+   
Sbjct: 304 VHVSEMDWTNKNIHPSKVVALGDEVEVMVLDIDEERRRISLGIKQCAMNPW----DEFAV 359

Query: 668 --KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYE 723
             K G  VSG +  +T   + +     G   G     HL+D    E         K G E
Sbjct: 360 THKKGDHVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWDEAGEQALRRYKKGDE 414

Query: 724 FDQL-LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETG 776
            + + L +D E   + L  K        QL  D      A H    SVV G + ++   G
Sbjct: 415 LETVVLSVDPERERISLGVK--------QLDKDPFSSFVALH-EKGSVVTGVIADVDAKG 465

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +     + G+   S+    +  D      +G+ V +  L V+ +   ++LS+K
Sbjct: 466 ATITLADGVEGYLRASEISRDRIEDARSVLKIGEEVEAKFLGVDRKNRSLSLSMK 520



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 129/303 (42%), Gaps = 37/303 (12%)

Query: 372 KVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDRG 422
           +++ ++L  D   + V L L     +P++  +R  P       KV +I D    V ++ G
Sbjct: 240 EISVKVLKFDRERQRVSLGLKQMGEDPWVNISRRYPESTRVFGKVTNIADYGCFVEIEEG 299

Query: 423 L-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEGL 476
           + GL+    +D  +  +     V + D  E  V  ++++       R RI LG +     
Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVALGDEVEVMVLDIDEE-------RRRISLGIKQC--- 349

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
                  + ++    TH   K G  V GK+ ++  FG  +   GG+  L  L  +S  E 
Sbjct: 350 -----AMNPWDEFAVTH---KKGDHVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWDEA 401

Query: 537 VKPG-KKFKVGAELVFRVLGVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWIT 594
            +   +++K G EL   VL V  +R  ++   K L K   +   +  E     +  G I 
Sbjct: 402 GEQALRRYKKGDELETVVLSVDPERERISLGVKQLDKDPFSSFVALHEKGS--VVTGVIA 459

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            ++  G  +   +GV+G+   SE+  D   +  S+  +G+ V+ + +     +R ++LS 
Sbjct: 460 DVDAKGATITLADGVEGYLRASEISRDRIEDARSVLKIGEEVEAKFLGVDRKNRSLSLSM 519

Query: 655 MMK 657
             K
Sbjct: 520 KAK 522



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 154/395 (38%), Gaps = 56/395 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L+ ++EGM +   VK++ D+G  L  G     G L   ++A    ++    V+ G  +  
Sbjct: 186 LKNLEEGMEVKGVVKNLTDYGAFLDLG--GIDGLLHITDMAWRRVKHPSEVVEIGDEISV 243

Query: 283 VVRSIDRTRKVVYLS-----SDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R+ V L       DP             ++I    P    V  +V +I + G
Sbjct: 244 KVLKFDRERQRVSLGLKQMGEDP------------WVNISRRYPESTRVFGKVTNIADYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-----TL 391
             +       G V +  +  T    +         +V   +L +D   R + L      +
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVALGDEVEVMVLDIDEERRRISLGIKQCAM 351

Query: 392 NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+    + H +      K+  I D    + +D G+  L             V +SD++ 
Sbjct: 352 NPWDEFAVTHKKGDHVSGKIKSITDFGIFIGLDGGIDGL-------------VHLSDISW 398

Query: 448 EEV-RKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           +E   +  ++YK+G  +   +L     R    L    L    F   V  H   + G VV 
Sbjct: 399 DEAGEQALRRYKKGDELETVVLSVDPERERISLGVKQLDKDPFSSFVALH---EKGSVVT 455

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
           G +  VD+ GA +    GV+       +S   I       K+G E+  + LGV  K++ +
Sbjct: 456 GVIADVDAKGATITLADGVEGYLRASEISRDRIEDARSVLKIGEEVEAKFLGVDRKNRSL 515

Query: 562 TVTHKKTLVKSKLAILSSYA-EATDRLITHGWITK 595
           +++ K   ++ +   +  Y+ EA++   T G I K
Sbjct: 516 SLSMKAKDMEDEQTAMKGYSREASNGTATLGDILK 550



 Score = 40.4 bits (93), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +++L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   IG  ++ +
Sbjct: 186  LKNLEEGMEVKGVVKNLTDYGAFLDLG-GIDGLLHITDMAWRRVKHPSEVVEIGDEISVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +   +RV + LK    +      +N          V G++  +  YG F+ IE
Sbjct: 245  VLKFDRERQRVSLGLK----QMGEDPWVNISRRYPESTRVFGKVTNIADYGCFVEIE 297



 Score = 40.4 bits (93), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 757 SHIHPNSV-VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVR 813
           S  +P S  V G V NI + GCFV     + G    S+ +D    ++  SK   +G  V 
Sbjct: 271 SRRYPESTRVFGKVTNIADYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVALGDEVE 329

Query: 814 SNILDVNSETGRITLSLKQSCCSSTD 839
             +LD++ E  RI+L +KQ   +  D
Sbjct: 330 VMVLDIDEERRRISLGIKQCAMNPWD 355


>gi|163849636|ref|YP_001637679.1| 30S ribosomal protein S1 [Methylobacterium extorquens PA1]
 gi|240136835|ref|YP_002961302.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens AM1]
 gi|254558710|ref|YP_003065805.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens DM4]
 gi|418060256|ref|ZP_12698176.1| ribosomal protein S1 [Methylobacterium extorquens DSM 13060]
 gi|163661241|gb|ABY28608.1| ribosomal protein S1 [Methylobacterium extorquens PA1]
 gi|240006799|gb|ACS38025.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens AM1]
 gi|254265988|emb|CAX21738.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens DM4]
 gi|373566184|gb|EHP92193.1| ribosomal protein S1 [Methylobacterium extorquens DSM 13060]
          Length = 570

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 193/487 (39%), Gaps = 69/487 (14%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAE 548
           F   ++  G VVKG V+ ++   A++      +   PL      E   PG++   KVG E
Sbjct: 23  FLQHEITEGSVVKGTVVGIEKDVAVIDIGAKTEGRVPLK-----EFTGPGREGELKVGDE 77

Query: 549 LVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +   V  +++      ++  K   +     L    EA +R+   G I    K G  V   
Sbjct: 78  VEVYVDRIENALGEAVISRDKARREESWVKLEKAFEANERVT--GTIFNQVKGGYTVDL- 134

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVS 662
           +G   F PRS++ + P  + + +    Q  +     R   +I  SRR  L       R  
Sbjct: 135 DGAVAFLPRSQVDIRPVRDVTPLLGTPQPFQILKMDRRRGNIVVSRRTVLEESRAEQRSE 194

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVI 718
               ++ G ++ GVV  +T     V +   G   G +    +A    +H      +   +
Sbjct: 195 LVANLEEGQVIDGVVKNITEYGAFVDL---GGIDGLLHVTDMAWRRVNHPSEVVTIGQTV 251

Query: 719 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
           K      +++ +++E+  + L  K  L +  + +   A+     + + G V NI + G F
Sbjct: 252 KV-----KIIKINHETHRISLGIKQLLADPWEGI---AARYPEEAKLKGRVTNITDYGAF 303

Query: 779 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           V     + G    S+ +   +     K     Q V   IL+V+S   RI+L LKQ+  + 
Sbjct: 304 VELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEVDSVKRRISLGLKQTLQNP 363

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            DA F ++H                           +GS +EG+V    +FG+ +  E  
Sbjct: 364 WDA-FAEKH--------------------------PVGSEVEGEVKNKTEFGLFIGLE-- 394

Query: 898 SDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
            DV G +    L     G  V    + G +++A +LDV   +  + L +K +  D F EA
Sbjct: 395 GDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVRAQVLDVDVEKERISLGVKQLGGDPFAEA 454

Query: 950 NSNRQAQ 956
              ++ Q
Sbjct: 455 GEVKKGQ 461



 Score = 47.0 bits (110), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 13/200 (6%)

Query: 460 GSCVRVRILGFRH-LEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
           G  V+V+I+   H    ++ GI  L A  +EG+   + +      +KG+V  +  +GA V
Sbjct: 248 GQTVKVKIIKINHETHRISLGIKQLLADPWEGIAARYPEEAK---LKGRVTNITDYGAFV 304

Query: 517 QFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSK 573
           +   G++ L  +  MS  +  V PGK      E+  ++L V S  +RI++  K+TL    
Sbjct: 305 ELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEVDSVKRRISLGLKQTLQNPW 364

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEPSSMYHV 632
            A    +   ++     G +    + G F+     V G    S+L  + PG +    +  
Sbjct: 365 DAFAEKHPVGSE---VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFKK 421

Query: 633 GQVVKCRIMSSIPASRRINL 652
           G +V+ +++       RI+L
Sbjct: 422 GDMVRAQVLDVDVEKERISL 441



 Score = 40.8 bits (94), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 131/335 (39%), Gaps = 57/335 (17%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ + G V  +    A + +   +   L + D A+     PSE+        IG+ V   
Sbjct: 202  GQVIDGVVKNITEYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEV------VTIGQTVKVK 254

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            ++ IN E   + L       GI     D        +  E  +  GR++ I     G  V
Sbjct: 255  IIKINHETHRISL-------GIKQLLADPWEGIAARYPEEAKL-KGRVTNITDY--GAFV 304

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++ P + G +H +E+           + +    P       Q V+ ++LE+    R    
Sbjct: 305  ELEPGIEGLIHVSEMS----------WTKKNVHPGKIVSTSQEVEVQILEVDSVKR---R 351

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + L L+ +L      N  D   +    G  +E            G VKN T  G FI L 
Sbjct: 352  ISLGLKQTL-----QNPWDAFAEKHPVGSEVE------------GEVKNKTEFGLFIGLE 394

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS+L  +   E   +EF  G +V  +VL V+   +R+ + +K       +++
Sbjct: 395  GDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVRAQVLDVDVEKERISLGVKQLGGDPFAEA 454

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
                   +  G IV  ++  V+  GL + + +T++
Sbjct: 455  -----GEVKKGQIVTCEVVEVKDSGLEVKLVDTDM 484


>gi|162382312|ref|YP_662036.2| 30S ribosomal protein S1 [Pseudoalteromonas atlantica T6c]
          Length = 557

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 143/348 (41%), Gaps = 24/348 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLEEGHEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 245

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+        I   Y E +      G +T +  +GCFV   +GV+G
Sbjct: 246 LKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSK---LSGAVTNLTDYGCFVEIEDGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 669
               SE+   +    PS + ++G  V+  ++      RRI+L     KP    E    K 
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEE--FAKA 360

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E 
Sbjct: 361 QSKGDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNKTGEDAVREYKKGDEI 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
              +L +D E   + L  K    +   Q  +D       ++V G V  +   G  V+   
Sbjct: 416 SAVVLQVDPERERISLGVKQIEEDPFNQYLTDTKK---GTIVVGTVTEVDAKGVTVKLAE 472

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G+   +     +  D S+   VG  + +  + V+ +   + LS+K
Sbjct: 473 EVEGYIRATDLARERVEDASEVASVGDEIEAKFMGVDRKNRIVNLSVK 520


>gi|218528186|ref|YP_002419002.1| 30S ribosomal protein S1 [Methylobacterium extorquens CM4]
 gi|218520489|gb|ACK81074.1| ribosomal protein S1 [Methylobacterium extorquens CM4]
          Length = 570

 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 193/487 (39%), Gaps = 69/487 (14%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAE 548
           F   ++  G VVKG V+ ++   A++      +   PL      E   PG++   KVG E
Sbjct: 23  FLQHEITEGSVVKGTVVGIEKDVAVIDIGAKTEGRVPLK-----EFTGPGREGELKVGDE 77

Query: 549 LVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +   V  +++      ++  K   +     L    EA +R+   G I    K G  V   
Sbjct: 78  VEVYVDRIENALGEAVISRDKARREESWVKLEKAFEANERVT--GTIFNQVKGGYTVDL- 134

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVS 662
           +G   F PRS++ + P  + + +    Q  +     R   +I  SRR  L       R  
Sbjct: 135 DGAVAFLPRSQVDIRPVRDVTPLLGTPQPFQILKMDRRRGNIVVSRRTVLEESRAEQRSE 194

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVI 718
               ++ G ++ GVV  +T     V +   G   G +    +A    +H      +   +
Sbjct: 195 LVANLEEGQVIDGVVKNITEYGAFVDL---GGIDGLLHVTDMAWRRVNHPSEVVTIGQTV 251

Query: 719 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
           K      +++ +++E+  + L  K  L +  + +   A+     + + G V NI + G F
Sbjct: 252 KV-----KIIKINHETHRISLGIKQLLADPWEGI---AARYPEEAKLKGRVTNITDYGAF 303

Query: 779 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           V     + G    S+ +   +     K     Q V   IL+V+S   RI+L LKQ+  + 
Sbjct: 304 VELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEVDSVKRRISLGLKQTLQNP 363

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            DA F ++H                           +GS +EG+V    +FG+ +  E  
Sbjct: 364 WDA-FAEKH--------------------------PVGSEVEGEVKNKTEFGLFIGLE-- 394

Query: 898 SDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
            DV G +    L     G  V    + G +++A +LDV   +  + L +K +  D F EA
Sbjct: 395 GDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVRAQVLDVDVEKERISLGVKQLGGDPFAEA 454

Query: 950 NSNRQAQ 956
              ++ Q
Sbjct: 455 GEVKKGQ 461



 Score = 47.0 bits (110), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 13/200 (6%)

Query: 460 GSCVRVRILGFRH-LEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
           G  V+V+I+   H    ++ GI  L A  +EG+   + +      +KG+V  +  +GA V
Sbjct: 248 GQTVKVKIIKINHETHRISLGIKQLLADPWEGIAARYPEEAK---LKGRVTNITDYGAFV 304

Query: 517 QFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSK 573
           +   G++ L  +  MS  +  V PGK      E+  ++L V S  +RI++  K+TL    
Sbjct: 305 ELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEVDSVKRRISLGLKQTLQNPW 364

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEPSSMYHV 632
            A    +   ++     G +    + G F+     V G    S+L  + PG +    +  
Sbjct: 365 DAFAEKHPVGSE---VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFKK 421

Query: 633 GQVVKCRIMSSIPASRRINL 652
           G +V+ +++       RI+L
Sbjct: 422 GDMVRAQVLDVDVEKERISL 441


>gi|394989057|ref|ZP_10381891.1| 30S ribosomal protein S1 [Sulfuricella denitrificans skB26]
 gi|393791476|dbj|GAB71530.1| 30S ribosomal protein S1 [Sulfuricella denitrificans skB26]
          Length = 572

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 150/363 (41%), Gaps = 29/363 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++K GMVVKG V  +  +GA V   GGV  L  +  ++   +  P +   VG E+   VL
Sbjct: 198 NLKEGMVVKGIVKNITDYGAFVDL-GGVDGLLHITDLAWRRVKHPSEVLAVGDEVEAVVL 256

Query: 555 GVKSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               ++  V+   K L       LS     + R+   G +T +  +G FV    G++G  
Sbjct: 257 KFDQEKNRVSLGVKQLGDDPWVNLSRRYPQSTRMF--GKVTNLTDYGAFVEIEQGIEGLV 314

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KLG 670
             SE+   +    P  +  +G  V+  I+      RRI+L      +   +D  V  + G
Sbjct: 315 HVSEMDWTNKNVHPGKVVQLGDEVEVMILEIDEERRRISLGMKQCKSNPWDDFAVTHQKG 374

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL- 727
           + VSG +  +T   V +     G   G     HL+D   +    ++V   K G E + + 
Sbjct: 375 NKVSGQIKSITDFGVFI-----GLPGGIDGLVHLSDLSWNMPGEEAVRNYKKGDEVEAMV 429

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        Q+  D      +    NS+V G V +    G  +   
Sbjct: 430 LAIDAERERISLGIK--------QMEGDPFTNYVAMNDKNSIVKGIVKSADAKGAVITLD 481

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
           G + G+   S+    +  D+      G  V + I++++ +   I LS+K    +  +A  
Sbjct: 482 GEVEGYLRASEVSRDRVEDIRTHLKEGDEVEAKIINIDRKNRNINLSIKAKDMAD-EADV 540

Query: 843 MQE 845
           MQ+
Sbjct: 541 MQK 543



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 139/324 (42%), Gaps = 43/324 (13%)

Query: 372 KVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVRVDRG 422
           +V A +L  D     V L +     +P++ L  R P S     KV ++ D    V +++G
Sbjct: 250 EVEAVVLKFDQEKNRVSLGVKQLGDDPWVNLSRRYPQSTRMFGKVTNLTDYGAFVEIEQG 309

Query: 423 L-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEGL 476
           + GL+    +D  +  V     V + D  E  + +++++       R RI LG +     
Sbjct: 310 IEGLVHVSEMDWTNKNVHPGKVVQLGDEVEVMILEIDEE-------RRRISLGMKQC--- 359

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
                K++ ++    TH   + G  V G++ ++  FG  +  PGG+  L    H+S+   
Sbjct: 360 -----KSNPWDDFAVTH---QKGNKVSGQIKSITDFGVFIGLPGGIDGLV---HLSDLSW 408

Query: 537 VKPG----KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHG 591
             PG    + +K G E+   VL + ++R  ++    + + +    ++Y    D+  I  G
Sbjct: 409 NMPGEEAVRNYKKGDEVEAMVLAIDAERERISL--GIKQMEGDPFTNYVAMNDKNSIVKG 466

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +   +  G  +     V+G+   SE+  D   +  +    G  V+ +I++    +R IN
Sbjct: 467 IVKSADAKGAVITLDGEVEGYLRASEVSRDRVEDIRTHLKEGDEVEAKIINIDRKNRNIN 526

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSG 675
           LS   K      D + K+ +  +G
Sbjct: 527 LSIKAKDMADEADVMQKMSASDTG 550


>gi|294102013|ref|YP_003553871.1| RNA binding S1 domain-containing protein [Aminobacterium
           colombiense DSM 12261]
 gi|293616993|gb|ADE57147.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 503

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 112/495 (22%), Positives = 201/495 (40%), Gaps = 78/495 (15%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           +   ++  G VV G ++  +  G +V      +   P    +   +V+  ++  +  E+ 
Sbjct: 27  YAGEEIHKGKVVTGTIVGANEDGWLVDVGYKCEGFLPRREWTHKILVEEEEEPSINDEIQ 86

Query: 551 FRVLGVK---SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
            +V+ ++     ++ V+  +     + A L S+  + D +   G I K+ K G  V  +N
Sbjct: 87  VQVINIRHGEDAQLLVSRWRCEFDRRWAELESFVSSHDLISVRG-IRKV-KGGLMVNCFN 144

Query: 608 GVQGFAPRSEL-----GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
            ++GF P S L     G++PG     ++ V  + K R    +  SRR+ +   ++  R  
Sbjct: 145 -LEGFIPISHLAEEGRGVNPGKFVGEVFDVKLLEKDRRKRRLVLSRRMLVEEAVEEQRNK 203

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
               V  G ++ G V  +T     + +   G   G +    L+   +     K V+K G 
Sbjct: 204 FYTTVSEGDILEGRVSSITSFGAFINL---GPIDGLVHISELS--WKRNVKPKEVVKKGE 258

Query: 723 EFD-QLLVLDNESSNLLLSAK------YSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
               +++ ++ E++ + LS K      +S++    ++   AS         G V N+ + 
Sbjct: 259 TVKVKVIGIEQENNRVSLSIKQTQPDPWSIVEENWKIGDKAS---------GVVTNVTDF 309

Query: 776 GCFVRFLGRLTGF---APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           G FV     + G       S A      D+ K    GQ+V   +LDV++E  R++L  KQ
Sbjct: 310 GAFVEVGPGIEGLIHIGDLSWARIKHPRDVLKK---GQNVEVVVLDVDAEKKRMSLGYKQ 366

Query: 833 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                T          +EE+                   +  G  I  KV    DFG  V
Sbjct: 367 LNDPWTG---------IEER-------------------YTKGQDITVKVVRLADFGAFV 398

Query: 893 SFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
             EE   V G I   QL+   V+        G  + A ++++  AER + LS+  +F + 
Sbjct: 399 EVEE--GVEGLIHISQLSTKRVDKPEDVLSEGEEVLARVIEINPAERRMRLSISALFEEE 456

Query: 946 FREANSNRQAQKKKR 960
            R    NR+ +KKKR
Sbjct: 457 IR---KNREEEKKKR 468



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 6/217 (2%)

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           V IS+++ +   K ++  K+G  V+V+++G        +  +K +  +       + K G
Sbjct: 237 VHISELSWKRNVKPKEVVKKGETVKVKVIGIEQENNRVSLSIKQTQPDPWSIVEENWKIG 296

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
               G V  V  FGA V+   G++ L  +  +S   I  P    K G  +   VL V  +
Sbjct: 297 DKASGVVTNVTDFGAFVEVGPGIEGLIHIGDLSWARIKHPRDVLKKGQNVEVVVLDVDAE 356

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
            KR+++ +K+ L      I   Y +  D  +    + ++   G FV    GV+G    S+
Sbjct: 357 KKRMSLGYKQ-LNDPWTGIEERYTKGQDITVK---VVRLADFGAFVEVEEGVEGLIHISQ 412

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           L      +P  +   G+ V  R++   PA RR+ LS 
Sbjct: 413 LSTKRVDKPEDVLSEGEEVLARVIEINPAERRMRLSI 449



 Score = 47.0 bits (110), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 141/346 (40%), Gaps = 69/346 (19%)

Query: 1167 VTGYVYKVDNEWALLT--ISRH--------------LKAQLFILDSAYEPSELQEFQRRF 1210
            V+ +  + D  WA L   +S H              L    F L+     S L E  R  
Sbjct: 102  VSRWRCEFDRRWAELESFVSSHDLISVRGIRKVKGGLMVNCFNLEGFIPISHLAEEGRGV 161

Query: 1211 HIGKAVTGHVLSI---NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + GK V G V  +    K+++  RLVL   +  + ++ V+   +   T + EGDI+ GR+
Sbjct: 162  NPGKFV-GEVFDVKLLEKDRRKRRLVLS--RRMLVEEAVEEQRNKFYTTVSEGDILEGRV 218

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1324
            S I S   G  + +GP + G VH +EL   +N+               P     +G+ VK
Sbjct: 219  SSITSF--GAFINLGP-IDGLVHISELSWKRNV--------------KPKEVVKKGETVK 261

Query: 1325 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1384
             KV+ I +       V LS++ +          D  + V+   K  +K           G
Sbjct: 262  VKVIGIEQE---NNRVSLSIKQT--------QPDPWSIVEENWKIGDK---------ASG 301

Query: 1385 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444
             V NVT  G F+ +   ++  + + +LS   ++ P      G+ V   VL V+   KR+ 
Sbjct: 302  VVTNVTDFGAFVEVGPGIEGLIHIGDLSWARIKHPRDVLKKGQNVEVVVLDVDAEKKRMS 361

Query: 1445 VTLKT-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +  K  +D  T  +       ++ V      ++ R+  +G F+ +E
Sbjct: 362  LGYKQLNDPWTGIEERYTKGQDITV------KVVRLADFGAFVEVE 401


>gi|341879709|gb|EGT35644.1| CBN-LET-716 protein [Caenorhabditis brenneri]
          Length = 1755

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 112/518 (21%), Positives = 207/518 (39%), Gaps = 54/518 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG         E   + D++  A ++GL +K+   ++   +K  E           
Sbjct: 13  FPRGGG--------SEKPKKADSDVPAGKQGLKRKSAAPEQNEAKKVKEETS-------- 56

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN 173
                   +  K+       G+   GVVAEV +  +++   G       A++        
Sbjct: 57  --------WIPKVEENCFIEGLTGLGVVAEVFDDGVLLHTAGTHTVKVHASEVSKKF--T 106

Query: 174 EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 233
           E+   E   +   F +GQ+V   V+   +DK   GK K   S   + L K LS   +  G
Sbjct: 107 ELFNEEKIEMKDAFQLGQMVPFRVISKKNDK---GKAKA--SCNPARLNKHLSPNMLAAG 161

Query: 234 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV 293
           +V+   V S+E+ G IL  GL   TGF+ +   A+     +K G+ L  +VR +  T +V
Sbjct: 162 LVIHTSVVSLEEKGAILDVGLDQITGFIEK---AQFPAGGLKEGIPL--IVRILSSTSRV 216

Query: 294 VYLSS--DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVD 350
           V ++S  + D ++    + L+   ++ L+PG ++        +  GV++       G + 
Sbjct: 217 VKVTSFVEQDNLNMASCEKLQ---LNHLMPGTILECEPTGDAVTAGVIVGIGNGLKGILP 273

Query: 351 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHV 405
               +   P    +N     K + A ++F    S+ + L  +P +     +  R     +
Sbjct: 274 ----RRNLPPRLRENPEKLGKAIRAVVMFCQQNSKILVLNAHPDIVAVSRIEKRTTFEGI 329

Query: 406 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVR 464
            +GD    + +  +     +   +P           IS     E    +  KY+ G+   
Sbjct: 330 SIGDKVTCTVIDTIPTKSIVYFTLPPIDGKKSLVTAISSRGLLENPDAVASKYEIGAEKL 389

Query: 465 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
            R+ G+R+ +   T   +       + T+ D K G ++  +V  +   G        VKA
Sbjct: 390 CRVTGYRYADRTITVSTRKDILNQKITTYKDAKCGDILDARVHHIAKSGVYFMVCNFVKA 449

Query: 525 LCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVKSKR 560
             P+  +S+  +     K  F++G E+  RV  +  +R
Sbjct: 450 FAPMSLLSDKPLTSQKIKSLFRMGTEVKCRVWQICEQR 487


>gi|15614199|ref|NP_242502.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
 gi|10174253|dbj|BAB05355.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
          Length = 383

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 148/329 (44%), Gaps = 53/329 (16%)

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            S+G  V+G V KV+++ A + +        F +D     SEL       H+ K     VL
Sbjct: 16   SVGDVVSGKVTKVEDKQAFVDVG-------FKVDGIIPISELS----SLHVEK--VSDVL 62

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            S   E +L  L +   +  +S + V      + +Q  +  G+++   ++ ++ G  GLVV
Sbjct: 63   SEGDELELKVLKVEDDELILSKRAVQAEKAWETLQAALDSGEVIEAEVADVVKG--GLVV 120

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
             +G  + G +            P S  +    +  S Y +G+ ++ KV+E+ +       
Sbjct: 121  DLG--VRGFI------------PASLVERHYVEDFSDY-KGRTLRLKVVELDKEANKLI- 164

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
              LS R+ LD              +   K  E +  L P  +V+G V+ +T  G F+ + 
Sbjct: 165  --LSQRAVLDE-------------EVEAKKKEVLASLQPGDVVEGTVQRLTDFGAFVDVG 209

Query: 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
              +D  V +S L+   VE+P +    G  V  +VLSV+P S+RV +++K +      Q E
Sbjct: 210  -GVDGLVHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVE 268

Query: 1460 INNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                  +  GD++ G +KR+ S+G F+ +
Sbjct: 269  ----GTIQPGDVIEGTVKRLVSFGAFVEV 293



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 141/341 (41%), Gaps = 21/341 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  V+   A V     V  + P+  +S   + K       G EL  +VL V+ 
Sbjct: 18  GDVVSGKVTKVEDKQAFVDVGFKVDGIIPISELSSLHVEKVSDVLSEGDELELKVLKVED 77

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + ++ +    +     L +  ++ +  +    +  + K G  V    GV+GF P S L
Sbjct: 78  DELILSKRAVQAEKAWETLQAALDSGE--VIEAEVADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 619 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
                 E  S Y  G+ ++ +++      + +  S+R  L   ++  +      ++ G +
Sbjct: 133 VERHYVEDFSDYK-GRTLRLKVVELDKEANKLILSQRAVLDEEVEAKKKEVLASLQPGDV 191

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           V G V  +T     V V   G   G +    LA H         V+K G     ++L +D
Sbjct: 192 VEGTVQRLTDFGAFVDV---GGVDGLVHISQLAHH--RVETPAEVVKEGDAVKVKVLSVD 246

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            +S  + LS K +L    +Q+      I P  V+ G V  ++  G FV     + G    
Sbjct: 247 PDSERVSLSIKETLPGPWEQVEG---TIQPGDVIEGTVKRLVSFGAFVEVAPGVEGLVHI 303

Query: 792 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           S+  +       +    G+ V++ +LDVN    RI+LS+++
Sbjct: 304 SQIANRHIGTPGEVLSEGERVQAKVLDVNISEKRISLSIRE 344



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG VV+G V  +  FGA V   GGV  L  +  ++   +  P +  K G  +  +VL 
Sbjct: 186 LQPGDVVEGTVQRLTDFGAFVDV-GGVDGLVHISQLAHHRVETPAEVVKEGDAVKVKVLS 244

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V   S+R++++ K+TL      +  +        +  G + ++   G FV    GV+G  
Sbjct: 245 VDPDSERVSLSIKETLPGPWEQVEGTIQPGD---VIEGTVKRLVSFGAFVEVAPGVEGLV 301

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       P  +   G+ V+ +++    + +RI+LS 
Sbjct: 302 HISQIANRHIGTPGEVLSEGERVQAKVLDVNISEKRISLSI 342



 Score = 48.5 bits (114), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 128/295 (43%), Gaps = 48/295 (16%)

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
            FI  S  E   +++F    + G+ +   V+ ++KE    +L+L   Q  + D+ V+    
Sbjct: 127  FIPASLVERHYVEDFSD--YKGRTLRLKVVELDKEAN--KLILS--QRAVLDEEVEAKKK 180

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             +   +  GD+V G + ++     G  V +G  + G VH ++L +  V  P     EG  
Sbjct: 181  EVLASLQPGDVVEGTVQRLTDF--GAFVDVG-GVDGLVHISQLAHHRVETPAEVVKEGDA 237

Query: 1312 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1371
                       VK KVL +      +  V LS++ +L G               P + +E
Sbjct: 238  -----------VKVKVLSVDPD---SERVSLSIKETLPG---------------PWEQVE 268

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
                + P  +++G VK + S G F+ ++  ++  V +S +++ ++ +P +    G+ V  
Sbjct: 269  GT--IQPGDVIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQA 326

Query: 1432 RVLSVEPLSKRVEVTLK--------TSDSRTASQSEINNLSNLHVGDIVIGQIKR 1478
            +VL V    KR+ ++++            R   +S     S   +GD++  ++K+
Sbjct: 327  KVLDVNISEKRISLSIRELLDDAGSNQSDREVYESTNEESSGFSLGDMIGDELKK 381



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 112/279 (40%), Gaps = 46/279 (16%)

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 727
           +G +VSG V  V      V V   G+   G IP   L+    H   +  V+  G E  +L
Sbjct: 17  VGDVVSGKVTKVEDKQAFVDV---GFKVDGIIPISELSSL--HVEKVSDVLSEGDEL-EL 70

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
            VL  E   L+LS +   + + +   +  + +    V+   V ++++ G  V    R  G
Sbjct: 71  KVLKVEDDELILSKRA--VQAEKAWETLQAALDSGEVIEAEVADVVKGGLVVDLGVR--G 126

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
           F P S        D S   Y G+++R  +++++ E  ++ LS +       +A       
Sbjct: 127 FIPASLVERHYVEDFSD--YKGRTLRLKVVELDKEANKLILSQRAVLDEEVEAK------ 178

Query: 848 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 907
             +E +A LQ                 G V+EG V    DFG   +F +   V G +   
Sbjct: 179 -KKEVLASLQP----------------GDVVEGTVQRLTDFG---AFVDVGGVDGLVHIS 218

Query: 908 QLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
           QLA   VE+       G  ++  +L V      V LS+K
Sbjct: 219 QLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIK 257



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           V IS +A   V    +  KEG  V+V++L         +  +K +           ++PG
Sbjct: 215 VHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVEGTIQPG 274

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-- 557
            V++G V  + SFGA V+   GV+ L  +  ++   I  PG+    G  +  +VL V   
Sbjct: 275 DVIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQAKVLDVNIS 334

Query: 558 SKRITVTHKKTL 569
            KRI+++ ++ L
Sbjct: 335 EKRISLSIRELL 346


>gi|262375356|ref|ZP_06068589.1| ribosomal protein S1 [Acinetobacter lwoffii SH145]
 gi|262309610|gb|EEY90740.1| ribosomal protein S1 [Acinetobacter lwoffii SH145]
 gi|407007266|gb|EKE22974.1| hypothetical protein ACD_6C00657G0006 [uncultured bacterium]
          Length = 558

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  V G +  +  +GA V   GG+  L  +  M+   I  P +  +VG E+  +V
Sbjct: 187 AQLEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      LAI++ Y + +   I    +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWLAIMNRYPKGS---IVKARVTNLTDYGCFAEIAEGVEG 302

Query: 612 FAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLVK- 668
               SE+   +    PS +  +G  V   ++      RRI+L   +K TR +  ++  K 
Sbjct: 303 LVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLG--IKQTRANPWEEFAKD 360

Query: 669 --LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D    E         K G   
Sbjct: 361 HDKGEKVSGTIKSITDFGIFI-----GLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTV 415

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           +  +L +D E + + L  K        Q+ +D      +     ++V G V  +   G  
Sbjct: 416 EAVILSVDAEGNRISLGIK--------QMNNDPFNDFLAANERGALVKGTVTAVDAKGAT 467

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+    +      S+    +  D +K   VGQ V + I++V+ ++  I LS+K
Sbjct: 468 VKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRAINLSIK 520



 Score = 48.5 bits (114), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           +A+ +E     H     G  V G + ++  FG  +  PGG+  L  L  +S  E  +   
Sbjct: 350 RANPWEEFAKDHD---KGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAI 406

Query: 541 KKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIE 597
           +++K G   E V   +  +  RI++  K+          + +  A +R  +  G +T ++
Sbjct: 407 RRYKKGDTVEAVILSVDAEGNRISLGIKQMNNDP----FNDFLAANERGALVKGTVTAVD 462

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G  V+  + V+     SE+  D   + +    VGQ V+ +I++    SR INLS   K
Sbjct: 463 AKGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRAINLSIKAK 522



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 77/410 (18%), Positives = 167/410 (40%), Gaps = 66/410 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N+++S +  +   S+    +  + +     V G + N+ + G FV  
Sbjct: 153  EF-KVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
              ++ +L     A++               +  GS+++ +V    D+G      E   V 
Sbjct: 262  LGEDPWL-----AIMNR-------------YPKGSIVKARVTNLTDYGCFAEIAEG--VE 301

Query: 902  GFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            G +   ++            V+ G  +   +L+V +  R + L +K    + +       
Sbjct: 302  GLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPW------- 354

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQ 1012
                     E +KD    + V+  ++ + +  + + LP     + + S   +N Q +   
Sbjct: 355  --------EEFAKDHDKGEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAI 406

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 1072
            +++  G +V A ++++ +     R+ L +K ++    +    A ++     G+LV+  +T
Sbjct: 407  RRYKKGDTVEAVILSVDAEGN--RISLGIKQMNNDPFNDFLAANER-----GALVKGTVT 459

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +      +K        +  +E+N D+   VE+     ++GQ V A+II
Sbjct: 460  AVDAKGATVKLADEVEATLKASEINRDR---VEDATKFLEVGQEVEAKII 506


>gi|261855929|ref|YP_003263212.1| 30S ribosomal protein S1 [Halothiobacillus neapolitanus c2]
 gi|261836398|gb|ACX96165.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2]
          Length = 560

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 159/365 (43%), Gaps = 35/365 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ GMV++G V  +  +GA +   GG+  L  +  M+   +  P +   +G E+  +VL 
Sbjct: 192 LQEGMVLRGVVKNLTDYGAFLDL-GGIDGLLHITDMAWKRVKHPSEVVNIGDEVDVKVLK 250

Query: 556 VKSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
               R  V+   K + +   + L+     + R+   G +T +  +GCFV   NGV+G   
Sbjct: 251 FDRDRNRVSLGMKQMGEDPWSDLARRFPISSRMF--GKVTNLTDYGCFVEIDNGVEGLVH 308

Query: 615 RSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV----KL 669
            SE+   +    P  +  VG  V+  I+      RRI+L   MK  + +  D      + 
Sbjct: 309 VSEMDWTNKNVNPGKVVSVGDEVEVMILDIDEERRRISLG--MKQCQANPWDAFAASHQK 366

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL 727
           G  VSG +  +T   V +     G   G     HL+D   +    ++V   K G E + +
Sbjct: 367 GDKVSGQIKSITDFGVFI-----GLDGGIDGLIHLSDLSWNEAGEEAVRQFKKGEEIEAV 421

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
           ++ +D E   + L  K        QL SD     A+      +V+G V  +   G  +  
Sbjct: 422 VIAIDPERERISLGLK--------QLESDPIGDYAADNQKGKIVNGTVREVDARGAVIDL 473

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              + G+  R+  +   R D ++T    G +V + ++ V+ +   ++LS++ +  S  ++
Sbjct: 474 GEGVEGYL-RASDISRDRIDDARTVLKEGDAVEAKVMGVDRKNRMVSLSIR-AKDSQEES 531

Query: 841 SFMQE 845
             M+E
Sbjct: 532 EAMEE 536



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 127/559 (22%), Positives = 218/559 (38%), Gaps = 94/559 (16%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-----IVKPGKKFKVGAELV 550
            ++PG +++G V+A++  G  V    G+K+   +P     +      VK G K  V  E V
Sbjct: 21   MQPGAIIEGTVVAIN--GDFVVIDTGLKSEGVIPAAEFLDENGELTVKVGDKVDVALESV 78

Query: 551  FRVLGVKSKRITVTHKKTL-VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
                G       ++ +K L  ++  A+  S+    +  I  G IT   K G  V     +
Sbjct: 79   EDGFG----ETKLSREKALRARAWTALEKSF---KNEEIVTGRITGKVKGGFTVEMGE-I 130

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSE 663
            + F P S + + P  + +  Y  G+ V+ +I+      +++  SRR  +       R + 
Sbjct: 131  RAFLPGSLVDVRPIRDTT--YLEGKDVEFKIIKLDQKRNNVVVSRRAVVEQEYSAERDAL 188

Query: 664  DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 722
             D ++ G ++ GVV  +T     + +   G   G +    +A   ++H +    V+  G 
Sbjct: 189  LDQLQEGMVLRGVVKNLTDYGAFLDL---GGIDGLLHITDMAWKRVKHPS---EVVNIGD 242

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
            E D ++L  D + + + L  K       +   SD +   P +S + G V N+ + GCFV 
Sbjct: 243  EVDVKVLKFDRDRNRVSLGMK----QMGEDPWSDLARRFPISSRMFGKVTNLTDYGCFVE 298

Query: 781  FLGRLTGFAPRSKA-VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                + G    S+     +  +  K   VG  V   ILD++ E  RI+L +KQ   +  D
Sbjct: 299  IDNGVEGLVHVSEMDWTNKNVNPGKVVSVGDEVEVMILDIDEERRRISLGMKQCQANPWD 358

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
            A F   H    +K                      G  + G++    DFGV +  +   D
Sbjct: 359  A-FAASH----QK----------------------GDKVSGQIKSITDFGVFIGLDGGID 391

Query: 900  VYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
              G I    L    AG       + G  I+A ++ +      + L LK +  D   +  +
Sbjct: 392  --GLIHLSDLSWNEAGEEAVRQFKKGEEIEAVVIAIDPERERISLGLKQLESDPIGDYAA 449

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
            + Q  K                VN  V  V     V+ L E     GY   SD +  +  
Sbjct: 450  DNQKGK---------------IVNGTVREVDARGAVIDLGEGVE--GYLRASDISRDRID 492

Query: 1012 QKQFL--NGQSVIATVMAL 1028
              + +   G +V A VM +
Sbjct: 493  DARTVLKEGDAVEAKVMGV 511



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 141/354 (39%), Gaps = 39/354 (11%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
           L+ +QEGMVL   VK++ D+G  L  G     G L   ++A      VK    +  +   
Sbjct: 189 LDQLQEGMVLRGVVKNLTDYGAFLDLG--GIDGLLHITDMAWKR---VKHPSEVVNIGDE 243

Query: 287 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR----VQSILENGVMLSFL 342
           +D   KV+    D + VS  + K +       L     +S+R    V ++ + G  +   
Sbjct: 244 VDV--KVLKFDRDRNRVSLGM-KQMGEDPWSDLARRFPISSRMFGKVTNLTDYGCFVEID 300

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLH 397
               G V +  +  T    N     +   +V   IL +D   R + L +     NP+   
Sbjct: 301 NGVEGLVHVSEMDWTNKNVNPGKVVSVGDEVEVMILDIDEERRRISLGMKQCQANPW--- 357

Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
           +    SH K   +  Q K +  D G+ + LD     +   + ++ ++  EE VR+ +K  
Sbjct: 358 DAFAASHQKGDKVSGQIKSI-TDFGVFIGLDGGIDGLIHLSDLSWNEAGEEAVRQFKKGE 416

Query: 458 KEGSCV------RVRI-LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
           +  + V      R RI LG + LE    G   A           D + G +V G V  VD
Sbjct: 417 EIEAVVIAIDPERERISLGLKQLESDPIGDYAA-----------DNQKGKIVNGTVREVD 465

Query: 511 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           + GA++    GV+       +S   I       K G  +  +V+GV  K   V+
Sbjct: 466 ARGAVIDLGEGVEGYLRASDISRDRIDDARTVLKEGDAVEAKVMGVDRKNRMVS 519


>gi|387127206|ref|YP_006295811.1| 30S ribosomal protein S1 [Methylophaga sp. JAM1]
 gi|386274268|gb|AFI84166.1| SSU ribosomal protein S1p [Methylophaga sp. JAM1]
          Length = 557

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 151/347 (43%), Gaps = 26/347 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VVKG V  +  +GA V   GG+  L  +  M+   +  P +   +G E+  +VL 
Sbjct: 189 LEEGKVVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSEVVAIGDEIDVQVLK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +R+++  K+        I   Y  +T R+   G +T I  +GCFV   +GV+G  
Sbjct: 248 FDKERERVSLGLKQLGDDPWKDIARRYPNST-RI--QGKVTNIADYGCFVEIEDGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KLG 670
             SE+   +    PS +  +G  V+  ++      RRI+L      T   E+  +    G
Sbjct: 305 HMSEMDWTNKNVHPSKLVTLGDEVEVMVLDIDAERRRISLGIKQCQTNPWEEFSMTHNKG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-LLV 729
             VSG +  +T     +++   G   G I    ++   E+  +++   K G E +  +L 
Sbjct: 365 DKVSGAIKSITDFG--IFIGLDGGIDGLIHLSDISWEEENEELIRD-FKKGDEVEAVVLA 421

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSD--ASHI--HP-NSVVHGYVCNIIETGCFVRFLGR 784
           +D E   + L  K        QL  D  ++++  HP  +VV+G V  +   G  +     
Sbjct: 422 IDPERERISLGIK--------QLQDDPFSAYLSEHPRGTVVNGKVIAVDAKGATIELAEG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   +     +  D SK   +G  V +    ++ +   +TLS+K
Sbjct: 474 VEGYVRVADIARERIEDASKVLNIGDDVEAKFTGMSRKDRTLTLSIK 520



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 147/377 (38%), Gaps = 85/377 (22%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL------------PRNNLAENSGIDV 274
           LET++EG V+   VK++ D+G  +  G     G L            P   +A    IDV
Sbjct: 186 LETLEEGKVVKGIVKNLTDYGAFVDLG--GIDGLLHITDMAWKRVKHPSEVVAIGDEIDV 243

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV 329
           +        V   D+ R+ V      L  DP        KD     I    P    STR+
Sbjct: 244 Q--------VLKFDKERERVSLGLKQLGDDP-------WKD-----IARRYPN---STRI 280

Query: 330 QSILEN-GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH--------KKVNARILFV 380
           Q  + N      F+    G   + H+       +W N  N H         +V   +L +
Sbjct: 281 QGKVTNIADYGCFVEIEDGVEGLVHMSEM----DWTN-KNVHPSKLVTLGDEVEVMVLDI 335

Query: 381 DPTSRAVGLTL-----NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
           D   R + L +     NP+    + HN+       +  I D    + +D G+  L     
Sbjct: 336 DAERRRISLGIKQCQTNPWEEFSMTHNKGDKVSGAIKSITDFGIFIGLDGGIDGL----- 390

Query: 432 TPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFE 487
                   + +SD++ EEE  +L + +K+G  V   +L      E ++ GI  L+   F 
Sbjct: 391 --------IHLSDISWEEENEELIRDFKKGDEVEAVVLAIDPERERISLGIKQLQDDPFS 442

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
             +  H     G VV GKVIAVD+ GA ++   GV+    +  ++   I    K   +G 
Sbjct: 443 AYLSEHP---RGTVVNGKVIAVDAKGATIELAEGVEGYVRVADIARERIEDASKVLNIGD 499

Query: 548 ELVFRVLGVKSKRITVT 564
           ++  +  G+  K  T+T
Sbjct: 500 DVEAKFTGMSRKDRTLT 516



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 155/364 (42%), Gaps = 33/364 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG--AELVFRV 553
           ++PG +V G V+ V     +V    G+K+   +P ++EF   K      VG   ++    
Sbjct: 18  MQPGKIVTGTVVNVGP--DVVMVNAGLKSEGAIP-VAEFMNEKGEITVSVGDLVDVSLET 74

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           L        ++ +K         L    EA + +I  G I+   K G  V   N ++ F 
Sbjct: 75  LEDGFGATQLSREKAKAAEAWTRLEHAFEANETVI--GIISGKVKGGFTVDLEN-IRAFL 131

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLV 667
           P S + + P  + S +   G+ ++ +++      ++I  SRR  +       R +  + +
Sbjct: 132 PGSLVDVRPIRDTSHLE--GKELEFKLIKLDRPRNNIVVSRRAIMEAENSVEREALLETL 189

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD- 725
           + G +V G+V  +T     V +   G   G +    +A   ++H +    V+  G E D 
Sbjct: 190 EEGKVVKGIVKNLTDYGAFVDL---GGIDGLLHITDMAWKRVKHPS---EVVAIGDEIDV 243

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV-VHGYVCNIIETGCFVRFLGR 784
           Q+L  D E   + L  K            D +  +PNS  + G V NI + GCFV     
Sbjct: 244 QVLKFDKERERVSLGLK----QLGDDPWKDIARRYPNSTRIQGKVTNIADYGCFVEIEDG 299

Query: 785 LTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
           + G    S+ +D    ++  SK   +G  V   +LD+++E  RI+L +KQ C ++    F
Sbjct: 300 VEGLVHMSE-MDWTNKNVHPSKLVTLGDEVEVMVLDIDAERRRISLGIKQ-CQTNPWEEF 357

Query: 843 MQEH 846
              H
Sbjct: 358 SMTH 361


>gi|410619280|ref|ZP_11330185.1| small subunit ribosomal protein S1 [Glaciecola polaris LMG 21857]
 gi|410161174|dbj|GAC34323.1| small subunit ribosomal protein S1 [Glaciecola polaris LMG 21857]
          Length = 579

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 143/348 (41%), Gaps = 24/348 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 209 ANLEEGHEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 267

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+        I   Y E +      G +T +  +GCFV   +GV+G
Sbjct: 268 LKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSK---LSGAVTNLTDYGCFVEIEDGVEG 324

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 669
               SE+   +    PS + ++G  V+  ++      RRI+L     KP    E    K 
Sbjct: 325 LVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEE--FAKA 382

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E 
Sbjct: 383 QSKGDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNKTGEDAVREYKKGDEI 437

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
              +L +D E   + L  K    +   Q  +D       ++V G V  +   G  V+   
Sbjct: 438 SAVVLQVDPERERISLGVKQIEEDPFNQYLTDTKK---GTIVIGTVTEVDAKGVTVKLAE 494

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G+   +     +  D S+   VG  + +  + V+ +   + LS+K
Sbjct: 495 EVEGYIRATDLARERVEDASEVASVGDEIEAKFMGVDRKNRIVNLSVK 542


>gi|15924466|ref|NP_372000.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927057|ref|NP_374590.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus N315]
 gi|148267960|ref|YP_001246903.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus JH9]
 gi|150394024|ref|YP_001316699.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus JH1]
 gi|156979795|ref|YP_001442054.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315983|ref|ZP_04839196.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006262|ref|ZP_05144863.2| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795469|ref|ZP_05644448.1| 30S ribosomal protein S1 [Staphylococcus aureus A9781]
 gi|258413277|ref|ZP_05681553.1| 30S ribosomal protein S1 [Staphylococcus aureus A9763]
 gi|258420616|ref|ZP_05683558.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258426811|ref|ZP_05688031.1| SSU ribosomal protein S1P [Staphylococcus aureus A9299]
 gi|258447357|ref|ZP_05695501.1| 30S ribosomal protein S1 [Staphylococcus aureus A6300]
 gi|258449758|ref|ZP_05697859.1| SSU ribosomal protein S1P [Staphylococcus aureus A6224]
 gi|258454572|ref|ZP_05702536.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|269203101|ref|YP_003282370.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ED98]
 gi|282928004|ref|ZP_06335613.1| 30S ribosomal protein S1 [Staphylococcus aureus A10102]
 gi|295407225|ref|ZP_06817025.1| 30S ribosomal protein S1 [Staphylococcus aureus A8819]
 gi|296275327|ref|ZP_06857834.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MR1]
 gi|297244649|ref|ZP_06928532.1| 30S ribosomal protein S1 [Staphylococcus aureus A8796]
 gi|384864699|ref|YP_005750058.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|387150617|ref|YP_005742181.1| 30S ribosomalprotein S1p [Staphylococcus aureus 04-02981]
 gi|415693542|ref|ZP_11455321.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|417651364|ref|ZP_12301127.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21172]
 gi|417800768|ref|ZP_12447876.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21318]
 gi|417892999|ref|ZP_12537036.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21201]
 gi|418424622|ref|ZP_12997739.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS1]
 gi|418427617|ref|ZP_13000624.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS2]
 gi|418430451|ref|ZP_13003366.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VRS3a]
 gi|418433431|ref|ZP_13006193.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS4]
 gi|418437092|ref|ZP_13008891.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS5]
 gi|418439958|ref|ZP_13011663.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS6]
 gi|418443014|ref|ZP_13014614.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS7]
 gi|418446073|ref|ZP_13017549.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS8]
 gi|418449021|ref|ZP_13020409.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS9]
 gi|418451839|ref|ZP_13023173.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VRS10]
 gi|418454896|ref|ZP_13026156.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VRS11a]
 gi|418457770|ref|ZP_13028972.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VRS11b]
 gi|418568613|ref|ZP_13132958.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21272]
 gi|418640379|ref|ZP_13202611.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus IS-3]
 gi|418652934|ref|ZP_13214896.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-99]
 gi|418662176|ref|ZP_13223730.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-122]
 gi|418878325|ref|ZP_13432560.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1165]
 gi|418881156|ref|ZP_13435374.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1213]
 gi|418884009|ref|ZP_13438202.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1769]
 gi|418886739|ref|ZP_13440887.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1150]
 gi|418895175|ref|ZP_13449270.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1057]
 gi|418914574|ref|ZP_13468546.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC340D]
 gi|418920556|ref|ZP_13474488.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC348]
 gi|418931550|ref|ZP_13485391.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1750]
 gi|418991338|ref|ZP_13538999.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1096]
 gi|419786040|ref|ZP_14311781.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus IS-M]
 gi|424773571|ref|ZP_18200628.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CM05]
 gi|81705665|sp|Q7A5J0.1|RS1_STAAN RecName: Full=30S ribosomal protein S1
 gi|81781569|sp|Q99U14.1|RS1_STAAM RecName: Full=30S ribosomal protein S1
 gi|13701275|dbj|BAB42569.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus N315]
 gi|14247247|dbj|BAB57638.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741029|gb|ABQ49327.1| SSU ribosomal protein S1P [Staphylococcus aureus subsp. aureus JH9]
 gi|149946476|gb|ABR52412.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156721930|dbj|BAF78347.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789441|gb|EEV27781.1| 30S ribosomal protein S1 [Staphylococcus aureus A9781]
 gi|257839841|gb|EEV64309.1| 30S ribosomal protein S1 [Staphylococcus aureus A9763]
 gi|257843564|gb|EEV67971.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257849972|gb|EEV73930.1| SSU ribosomal protein S1P [Staphylococcus aureus A9299]
 gi|257853548|gb|EEV76507.1| 30S ribosomal protein S1 [Staphylococcus aureus A6300]
 gi|257857006|gb|EEV79906.1| SSU ribosomal protein S1P [Staphylococcus aureus A6224]
 gi|257862955|gb|EEV85719.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|262075391|gb|ACY11364.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ED98]
 gi|282590301|gb|EFB95381.1| 30S ribosomal protein S1 [Staphylococcus aureus A10102]
 gi|285817156|gb|ADC37643.1| SSU ribosomal protein S1p [Staphylococcus aureus 04-02981]
 gi|294967938|gb|EFG43967.1| 30S ribosomal protein S1 [Staphylococcus aureus A8819]
 gi|297178679|gb|EFH37925.1| 30S ribosomal protein S1 [Staphylococcus aureus A8796]
 gi|312829866|emb|CBX34708.1| 30S ribosomal protein S1 homolog [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129192|gb|EFT85187.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727548|gb|EGG64004.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21172]
 gi|334277648|gb|EGL95872.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21318]
 gi|341856364|gb|EGS97203.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21201]
 gi|371979441|gb|EHO96674.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21272]
 gi|375014943|gb|EHS08614.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus IS-3]
 gi|375020856|gb|EHS14367.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-99]
 gi|375037121|gb|EHS30175.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-122]
 gi|377694447|gb|EHT18812.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1165]
 gi|377694981|gb|EHT19345.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1057]
 gi|377714344|gb|EHT38545.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1769]
 gi|377714832|gb|EHT39031.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1750]
 gi|377723460|gb|EHT47585.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1096]
 gi|377725692|gb|EHT49805.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1150]
 gi|377731346|gb|EHT55402.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1213]
 gi|377758076|gb|EHT81964.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC340D]
 gi|377764282|gb|EHT88135.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC348]
 gi|383361341|gb|EID38715.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus IS-M]
 gi|387718170|gb|EIK06156.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS2]
 gi|387718420|gb|EIK06390.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VRS3a]
 gi|387719830|gb|EIK07761.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS1]
 gi|387725431|gb|EIK13047.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS4]
 gi|387727393|gb|EIK14909.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS5]
 gi|387730579|gb|EIK17957.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS6]
 gi|387736001|gb|EIK23111.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS8]
 gi|387737030|gb|EIK24111.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS7]
 gi|387737276|gb|EIK24350.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus VRS9]
 gi|387744720|gb|EIK31484.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VRS10]
 gi|387745388|gb|EIK32146.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VRS11a]
 gi|387746975|gb|EIK33692.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VRS11b]
 gi|402347210|gb|EJU82256.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CM05]
 gi|408423616|emb|CCJ11027.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           ST228]
 gi|408425606|emb|CCJ12993.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           ST228]
 gi|408427594|emb|CCJ14957.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           ST228]
 gi|408429582|emb|CCJ26747.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           ST228]
 gi|408431569|emb|CCJ18884.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           ST228]
 gi|408433563|emb|CCJ20848.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           ST228]
 gi|408435555|emb|CCJ22815.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           ST228]
 gi|408437539|emb|CCJ24782.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           ST228]
          Length = 391

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+    KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIHGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIHGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|109701062|gb|ABG40982.1| SSU ribosomal protein S1P [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 143/348 (41%), Gaps = 24/348 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 209 ANLEEGHEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 267

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+        I   Y E +      G +T +  +GCFV   +GV+G
Sbjct: 268 LKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSK---LSGAVTNLTDYGCFVEIEDGVEG 324

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 669
               SE+   +    PS + ++G  V+  ++      RRI+L     KP    E    K 
Sbjct: 325 LVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEE--FAKA 382

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E 
Sbjct: 383 QSKGDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNKTGEDAVREYKKGDEI 437

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
              +L +D E   + L  K    +   Q  +D       ++V G V  +   G  V+   
Sbjct: 438 SAVVLQVDPERERISLGVKQIEEDPFNQYLTDTKK---GTIVVGTVTEVDAKGVTVKLAE 494

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G+   +     +  D S+   VG  + +  + V+ +   + LS+K
Sbjct: 495 EVEGYIRATDLARERVEDASEVASVGDEIEAKFMGVDRKNRIVNLSVK 542


>gi|383784774|ref|YP_005469344.1| 30S ribosomal protein S1 [Leptospirillum ferrooxidans C2-3]
 gi|383083687|dbj|BAM07214.1| ribosomal protein S1 [Leptospirillum ferrooxidans C2-3]
          Length = 585

 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 156/369 (42%), Gaps = 48/369 (13%)

Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD-IFHLQNTF--PTTNWKNDYN 368
           K +++D L  G ++   V++I + G  +       G +D + H+ +      +N ++  N
Sbjct: 198 KKVTMDALKEGEVLEGIVKNITDYGAFIDL-----GGIDGLLHITDMSWGRVSNPQDLMN 252

Query: 369 QHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVKVG----DIYDQSKVVRV 419
              K+N  +L  D  +  V L L     +P+ L     P   KV      I D    + +
Sbjct: 253 VGDKLNVVVLKHDRDTGRVSLGLKQLSADPWTLVATRYPEFSKVAAKVVSITDYGAFLEI 312

Query: 420 DRGLGLLLDIPST----PVSTPAYV-TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
           + G+  L+ +        V  P+ +  + DV E  V K+++K ++ S      LG + L 
Sbjct: 313 EPGVEGLMHVTEMSWNHEVKHPSKIMNVGDVVEARVLKIDEKNRKIS------LGLKQL- 365

Query: 475 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
               G     + E           G VV GKV ++  FGA V    G+  L  +  MS  
Sbjct: 366 ----GPNPWDSVE------ERYPIGTVVSGKVKSLTDFGAFVGLDEGIDGLIHISDMSWT 415

Query: 535 EIVK-PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT---- 589
           + V+ P + FK G ++   VL ++ +R     + +L   +L+     +E  +R       
Sbjct: 416 KHVRHPSELFKKGQKVEVAVLKIEKER----QRLSLGFKQLSQDPWDSEIPERFAVGVSV 471

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G ITK+   G FV    GV+G    SE+ ++ G      Y VG  +  R++   PA R+
Sbjct: 472 DGVITKVMDFGFFVELAEGVEGLVHVSEVDIESGQRLDQSYQVGSTISVRVIKLDPAERK 531

Query: 650 INLSFMMKP 658
           I LS    P
Sbjct: 532 IGLSVKPMP 540


>gi|297207865|ref|ZP_06924298.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|296887439|gb|EFH26339.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           51811]
          Length = 391

 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + ++  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEIVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 47.4 bits (111), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEIVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 93/243 (38%), Gaps = 57/243 (23%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSF 894
           +  
Sbjct: 211 IDI 213



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEIVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.8 bits (94), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 95/204 (46%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTP---- 233

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
                 + +     GQ VK K+  I R    T  + LS++ +L                TP
Sbjct: 234  -----EEIVSI--GQDVKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|373114784|ref|ZP_09528993.1| ribosomal protein S1 [Fusobacterium necrophorum subsp. funduliforme
           1_1_36S]
 gi|371650964|gb|EHO16400.1| ribosomal protein S1 [Fusobacterium necrophorum subsp. funduliforme
           1_1_36S]
          Length = 546

 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 130/499 (26%), Positives = 216/499 (43%), Gaps = 74/499 (14%)

Query: 187 FHVGQLVSCIV---LQLDDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
           + VG  V  ++   L+ DDD++ +   +++I L      +      +TV  G +    VK
Sbjct: 64  YQVGDQVEVVLVGLLEADDDQEVLIASRKRIDLEDNWKHIEDSYENKTVLSGKI----VK 119

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            I+  GYI+   L  + GFLP N+L+E   I+ K G  + G  ++ID   K +    + D
Sbjct: 120 KIK-GGYIVEASL--YQGFLP-NSLSE---INEKDGETMVG--KNIDVIVKDIK-QDNRD 169

Query: 302 TVSKCVTKDLKGISI-------DLLVPGMMVSTRVQSILENG--VMLSFLTYFTGTVDIF 352
             SK +T   K I++         L  G +V+  V  I++ G  VM++ L  F    ++ 
Sbjct: 170 KRSKKITFSKKDITLMKEEEEFAKLTVGDVVTCTVSGIMDFGLSVMINHLRGFIHISEVS 229

Query: 353 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVKV 407
             +      + K+ Y+  + V A+IL +D   + + L++     NP+ L   A     +V
Sbjct: 230 WKR----LDDLKDLYSVGQTVEAKILSLDEEKKNIKLSIKQLTENPWDLSKDAFHEGDEV 285

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRVR 466
                + KV RV    G  +++          V ISD A  + R  +E+  K G  V+V+
Sbjct: 286 -----EGKVTRV-LAYGAFVELTE---GVEGLVHISDFAWNKKRINMEEYAKVGETVKVK 336

Query: 467 ILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK-----VIAVDSFGAIVQFPG 520
           IL F      L  G      F+ LV    DV      +GK     ++ +  FG   +   
Sbjct: 337 ILEFNPEARKLKLG------FKQLVENPWDVAEEKFGEGKELTASILDIKPFGLFAEIES 390

Query: 521 GVKALCPLPHMSEFEIVKPGKK---FKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL- 574
           GV       H S+F    PG++   +++G  + F+VL   V+ K+I  + K  L KS   
Sbjct: 391 GVDVFI---HSSDFGW--PGEEPANYQIGDSISFKVLELNVEDKKIKGSIK-ALKKSPWD 444

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
             +  Y   T        I  I   G FV    G+ GF P   +  D   +    + +GQ
Sbjct: 445 KAMEEYKVGT---TVEKKIKNIMDFGLFVELTKGIDGFIPTQFVSKDFVKDLKDKFEIGQ 501

Query: 635 VVKCRIMSSIPASRRINLS 653
           +VK +I+     +++I LS
Sbjct: 502 IVKAQIVEINQETQKIKLS 520



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 112/259 (43%), Gaps = 27/259 (10%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMSSIPASR 648
            G +T++  +G FV    GV+G    S+   +        Y  VG+ VK +I+   P +R
Sbjct: 286 EGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEAR 345

Query: 649 RINLSF---MMKPTRVSEDDLVKLGSLVSGVVDV-------VTPNAVVVYVIAKGYSKGT 698
           ++ L F   +  P  V+E+   +   L + ++D+          + V V++ +  +    
Sbjct: 346 KLKLGFKQLVENPWDVAEEKFGEGKELTASILDIKPFGLFAEIESGVDVFIHSSDFG--- 402

Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            P E  A++    ++   V+       +L V D +    + + K S  + A +       
Sbjct: 403 WPGEEPANYQIGDSISFKVL-------ELNVEDKKIKGSIKALKKSPWDKAME------E 449

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
               + V   + NI++ G FV     + GF P          DL   + +GQ V++ I++
Sbjct: 450 YKVGTTVEKKIKNIMDFGLFVELTKGIDGFIPTQFVSKDFVKDLKDKFEIGQIVKAQIVE 509

Query: 819 VNSETGRITLSLKQSCCSS 837
           +N ET +I LS+K+S   +
Sbjct: 510 INQETQKIKLSIKKSNWKN 528



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 167/386 (43%), Gaps = 64/386 (16%)

Query: 1110 NFKIGQTVTAR---IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE---CDVSI 1163
            N K G+T+  +   +I K  K D +         +   +T S+    L+ EE     +++
Sbjct: 144  NEKDGETMVGKNIDVIVKDIKQDNRDK-------RSKKITFSKKDITLMKEEEEFAKLTV 196

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  VT  V  +  ++ L  +  HL+   FI  S      L + +  + +G+ V   +LS+
Sbjct: 197  GDVVTCTVSGI-MDFGLSVMINHLRG--FIHISEVSWKRLDDLKDLYSVGQTVEAKILSL 253

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            ++EKK ++L ++     +++   D+S D      HEGD V G+++++L+   G  V++  
Sbjct: 254  DEEKKNIKLSIKQ----LTENPWDLSKDAF----HEGDEVEGKVTRVLA--YGAFVELTE 303

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
             + G VH ++            +++ + +       G+ VK K+LE +   R    ++L 
Sbjct: 304  GVEGLVHISDF----------AWNKKRINMEEYAKVGETVKVKILEFNPEAR---KLKLG 350

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHL-EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             +  ++     N  D++ +    GK L   I D+ P              G F  +   +
Sbjct: 351  FKQLVE-----NPWDVAEEKFGEGKELTASILDIKPF-------------GLFAEIESGV 392

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1462
            D  +  S+   G+       + IG  ++ +VL +    K+++ ++K        ++    
Sbjct: 393  DVFIHSSDF--GWPGEEPANYQIGDSISFKVLELNVEDKKIKGSIKALKKSPWDKA---- 446

Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITI 1488
            +    VG  V  +IK +  +GLF+ +
Sbjct: 447  MEEYKVGTTVEKKIKNIMDFGLFVEL 472


>gi|71278192|ref|YP_269055.1| 30S ribosomal protein S1 [Colwellia psychrerythraea 34H]
 gi|71143932|gb|AAZ24405.1| ribosomal protein S1 [Colwellia psychrerythraea 34H]
          Length = 553

 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 141/342 (41%), Gaps = 23/342 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  VKG V  +  +GA V   GG+  L  +  M+   +  P +   VG E+  +VL    
Sbjct: 192 GQEVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSEIVNVGDEIQVKVLKFDR 250

Query: 559 KRITVT--HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +R  V+   K+      +AI + Y E +      G +T +  +GCFV    GV+G    S
Sbjct: 251 ERTRVSLGMKQLGEDPWVAIANRYPEGSK---LSGRVTNLTDYGCFVEIQEGVEGLVHVS 307

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSL 672
           E+   +    PS + ++G  V+  ++      RRI+L     +  P      +  K G  
Sbjct: 308 EMDWTNKNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLKQCIANPWEEFAKNFNK-GDK 366

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL-LV 729
           VSG +  +T   + +     G   G     HL+D +  A   ++V   K G E D + L 
Sbjct: 367 VSGKIKSITDFGIFI-----GLDGGIDGLVHLSD-ISWAGGEEAVRDYKKGDEIDAIVLQ 420

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
           +D E   + L  K +  +      +D       ++V G V  +   G  +     + G+ 
Sbjct: 421 VDPERERISLGVKQAEDDPFNMYLADKKK---GAIVTGKVTEVDAKGATILLAESVEGYL 477

Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             S     +  D S    VG  V +  + V+ +   I+LS+K
Sbjct: 478 RVSDISVERIEDASTVLKVGDDVEARFMGVDRKNRTISLSIK 519



 Score = 44.3 bits (103), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 141/357 (39%), Gaps = 46/357 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE++ EG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +Q 
Sbjct: 186 LESLAEGQEVKGIVKNLTDYGAFVDLG--GIDGLLHITDMAWKRVKHPSEIVNVGDEIQV 243

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSF 341
            V   DR R  V L        K + +D   ++I    P G  +S RV ++ + G  +  
Sbjct: 244 KVLKFDRERTRVSLGM------KQLGED-PWVAIANRYPEGSKLSGRVTNLTDYGCFVEI 296

Query: 342 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLL 396
                G V +  +  T    +     N    V   +L +D   R + L L     NP+  
Sbjct: 297 QEGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLKQCIANPWEE 356

Query: 397 H----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA----EE 448
                N+      K+  I D    + +D G+  L             V +SD++    EE
Sbjct: 357 FAKNFNKGDKVSGKIKSITDFGIFIGLDGGIDGL-------------VHLSDISWAGGEE 403

Query: 449 EVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
            VR     YK+G  +   +L      E ++ G+ +A   +      +D K G +V GKV 
Sbjct: 404 AVRD----YKKGDEIDAIVLQVDPERERISLGVKQAED-DPFNMYLADKKKGAIVTGKVT 458

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            VD+ GA +     V+    +  +S   I       KVG ++  R +GV  K  T++
Sbjct: 459 EVDAKGATILLAESVEGYLRVSDISVERIEDASTVLKVGDDVEARFMGVDRKNRTIS 515


>gi|289550745|ref|YP_003471649.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis HKU09-01]
 gi|315658241|ref|ZP_07911113.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|385784373|ref|YP_005760546.1| putative 30S ribosomal protein S1 [Staphylococcus lugdunensis
           N920143]
 gi|418414047|ref|ZP_12987263.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis
           ACS-027-V-Sch2]
 gi|289180277|gb|ADC87522.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01]
 gi|315496570|gb|EFU84893.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|339894629|emb|CCB53913.1| putative 30S ribosomal protein S1 [Staphylococcus lugdunensis
           N920143]
 gi|410877685|gb|EKS25577.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis
           ACS-027-V-Sch2]
          Length = 392

 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 24/260 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D+      P++ +ST  ++    V + +  K++ +  E    RV 
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTD-FIEDFSVFDGQTIKIKVEELEPEKNRV- 168

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
           IL  + +E     + KAS  + L         G V+KGKV  + +FGA +   GGV  L 
Sbjct: 169 ILSRKAVEQAENEVKKASLLDSL-------NAGDVIKGKVARLTNFGAFIDI-GGVDGLV 220

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 584
            +  +S   +  P     VG E+  +V  V+  S+RI+++ K TL      I   + E  
Sbjct: 221 HVSELSHEHVDSPEDVVSVGQEVEVKVKSVEKDSERISLSIKDTLPTPFERIKGQFHEGD 280

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
              +  G + ++   G FV    GVQG    SE+       PS     GQ V  +I+   
Sbjct: 281 ---VIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVD 337

Query: 645 PASRRINLSFMMKPTRVSED 664
             + RI+LS  +K T  +ED
Sbjct: 338 EDNERISLS--IKATLPNED 355



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  + G+V  V+    +V   GG    + P+  +S   I  P +   VG  +   
Sbjct: 11  NDIKEGDKITGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIDNPNEVVSVGDSIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEVDEENESGAYILSKRQLETEKSYEYLQEKLNNDEVIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ +K ++    P   R+ LS   K    +E+++ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIKIKVEELEPEKNRVILS--RKAVEQAENEVKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASLLDSLNAGDVIKGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E + ++  ++ +S  + LS K +L    +++       H   V+ G V  +   G FV
Sbjct: 240 GQEVEVKVKSVEKDSERISLSIKDTLPTPFERI---KGQFHEGDVIEGTVVRLAAFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+         S+    GQ V   IL V+ +  RI+LS+K + 
Sbjct: 297 EVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDEDNERISLSIKATL 351



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 13/120 (10%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   +++G V  +T+ G FI +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 188  LDSLNAGDVIKGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVEVK 246

Query: 1433 VLSVEPLSKRVEV----TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  S+R+ +    TL T   R   Q         H GD++ G + R+ ++G F+ +
Sbjct: 247  VKSVEKDSERISLSIKDTLPTPFERIKGQ--------FHEGDVIEGTVVRLAAFGAFVEV 298



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G V++G V+ + +FGA V+   GV+ L  +  +    I  P +K + G ++  ++LGV  
Sbjct: 279 GDVIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDE 338

Query: 557 KSKRITVTHKKTL-----VKSKLAILSSY 580
            ++RI+++ K TL     ++S  A   SY
Sbjct: 339 DNERISLSIKATLPNEDVIESDEATTQSY 367


>gi|389690536|ref|ZP_10179429.1| ribosomal protein S1 [Microvirga sp. WSM3557]
 gi|388588779|gb|EIM29068.1| ribosomal protein S1 [Microvirga sp. WSM3557]
          Length = 566

 Score = 67.4 bits (163), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 195/486 (40%), Gaps = 67/486 (13%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPG---GVKALCPLPHMSEFEIVKPGKKFKVGA 547
           F  S++  G VVKGKV+A++   A++       G  AL      +  + V  G + +V  
Sbjct: 21  FRTSEISEGSVVKGKVVAIEKDVAVIDIGAKTEGRVALKEFAGPNRDQTVNVGDEVEVYV 80

Query: 548 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           E +   LG       ++  K   +     L    EA +R+  +G I    K G  V   +
Sbjct: 81  ERIENALG----EAVISRDKARREESWVKLEKAFEAGERV--NGTIFNQVKGGYTVDL-D 133

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSE 663
           G   F PRS++ + P  + + +  V Q  +     R   +I  SRR  L       R   
Sbjct: 134 GAVAFLPRSQVDIRPVRDVTPLMGVAQPFQILKMDRRRGNIVVSRRTVLEESRAEQRSEL 193

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVIK 719
              ++ G ++ GVV  +T     V +   G   G +    +A    +H      +   +K
Sbjct: 194 VANLEEGQVIDGVVKNITEYGAFVDL---GGIDGLLHVTDMAWRRVNHPSEVVTIGQTVK 250

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
                 +++ +++E+  + L  K  L +  + +   A+     + + G V NI + G FV
Sbjct: 251 V-----KIIKINHETHRISLGIKQLLADPWEGI---AARYPVGAKLKGRVTNITDYGAFV 302

Query: 780 RFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
                + G    S+ +   +     K     Q V   IL+V+    RI+L LKQ+  +  
Sbjct: 303 ELEPGIEGLIHVSEMSWTKKNVHPGKIISTSQEVEVVILEVDQVKRRISLGLKQTLQNPW 362

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           +A F ++H                           +GS +EG+V    +FG+ +  E  +
Sbjct: 363 EA-FAEKH--------------------------PVGSEVEGEVKNKTEFGLFIGLE--N 393

Query: 899 DVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
           DV G +    L     G  V    + G V++A +LDV   +  + L +K +  D F EA 
Sbjct: 394 DVDGMVHLSDLDWNRPGEQVIDDFKKGDVVRAQVLDVDVEKERISLGIKQLAGDPFAEAG 453

Query: 951 SNRQAQ 956
             ++ Q
Sbjct: 454 EIKKGQ 459



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 160/408 (39%), Gaps = 60/408 (14%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G V+ G V  +  +GA V   GG+  L  +  M+   +  P +   +G  +  ++
Sbjct: 195 ANLEEGQVIDGVVKNITEYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKI 253

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + +  ++ RI++  K+ L      I + Y          G +T I  +G FV    G++G
Sbjct: 254 IKINHETHRISLGIKQLLADPWEGIAARYPVGAK---LKGRVTNITDYGAFVELEPGIEG 310

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-- 668
               SE+        P  +    Q V+  I+      RRI+L          E    K  
Sbjct: 311 LIHVSEMSWTKKNVHPGKIISTSQEVEVVILEVDQVKRRISLGLKQTLQNPWEAFAEKHP 370

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI---------PTEHLADHLEHATVMKSVIK 719
           +GS V G  +V       +++  +    G +         P E + D  +   V+++   
Sbjct: 371 VGSEVEG--EVKNKTEFGLFIGLENDVDGMVHLSDLDWNRPGEQVIDDFKKGDVVRA--- 425

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHPNSVVHGYVCNIIET 775
                 Q+L +D E   + L  K        QL  D    A  I    +V   V  + + 
Sbjct: 426 ------QVLDVDVEKERISLGIK--------QLAGDPFAEAGEIKKGQIVTCEVLEVKDG 471

Query: 776 GCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           G  V+ +   LT F  R++    +     + +  G+ + + +   + +  R+T+S+K   
Sbjct: 472 GLEVKIVDADLTTFIKRNELARDRADQRPERFAAGEKLDARVTQFDRKARRVTVSIKALE 531

Query: 835 CSSTDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGK 881
            +             EEK AM Q  S  +G+ L    G I+G+ ++ +
Sbjct: 532 VA-------------EEKEAMAQYGSTDSGASL----GDILGAALKAR 562


>gi|407715951|ref|YP_006837231.1| 30S ribosomal subunit protein S1 [Cycloclasticus sp. P1]
 gi|407256287|gb|AFT66728.1| 30S ribosomal subunit protein S1, site specific RNA helicase,
           component of the degradosome [Cycloclasticus sp. P1]
          Length = 555

 Score = 67.4 bits (163), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 152/346 (43%), Gaps = 22/346 (6%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++K G ++KG V  +  +GA +   GGV  L  +  M+   +  P +  ++G ++   VL
Sbjct: 188 NLKEGAILKGVVKNLTDYGAFIDL-GGVDGLLHITDMAWKRVKHPSEVIEIGQDIEVLVL 246

Query: 555 --GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               + KR+++  K+      + IL  Y     +L   G +T +  +GCF+   +G++G 
Sbjct: 247 RYDEEKKRVSLGMKQLGEDPWVNILDRYP-VNSKL--SGKVTNLTDYGCFIEIEDGIEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    P+ +  +G  V+  ++      RRI+L          ED   + K 
Sbjct: 304 VHVSEMDWTNKNVNPAKIVSLGDEVEVMVLEIDDTRRRISLGMKQCKGNPWEDFSAIHKK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQ- 726
           G  + G++  +T     V++   G   G +   HL+D    E A       K G E +  
Sbjct: 364 GDKIKGLIKSITDFG--VFIGLDGDIDGLV---HLSDISWDEKAEEDLQNYKKGMEIETV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D+E   + L  K    +  Q+    AS+   NS+V G V  +   G  ++    + 
Sbjct: 419 ILAIDSERERISLGIKQLEQDPFQEFL--ASN-DKNSLVKGTVKEVDAKGAVIQLAEGIE 475

Query: 787 GFAPRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSETGRITLSLK 831
           G+  R+  ++  R D ++     G  V +  + V+ +   I LS+K
Sbjct: 476 GYL-RASELNRDRVDDARNLLTEGDEVEAKFIGVDRKNKTINLSVK 520



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 173/419 (41%), Gaps = 43/419 (10%)

Query: 182 LLPTIFHVGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
           L  T F  G+ +   V++LD+ +  +   R+  L    S   + L LE ++EG +L   V
Sbjct: 141 LRDTTFLEGKDLEFKVIKLDEKRNNVVVSRRAVLETEYSAEREAL-LENLKEGAILKGVV 199

Query: 241 KSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
           K++ D+G  +  G     G L   ++A    ++    ++ G  ++ +V   D  +K V L
Sbjct: 200 KNLTDYGAFIDLG--GVDGLLHITDMAWKRVKHPSEVIEIGQDIEVLVLRYDEEKKRVSL 257

Query: 297 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
                   K + +D     +D       +S +V ++ + G  +       G V +  +  
Sbjct: 258 G------MKQLGEDPWVNILDRYPVNSKLSGKVTNLTDYGCFIEIEDGIEGLVHVSEMDW 311

Query: 357 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY----LLHNRAPPSHVKV 407
           T    N     +   +V   +L +D T R + L +     NP+     +H +       +
Sbjct: 312 TNKNVNPAKIVSLGDEVEVMVLEIDDTRRRISLGMKQCKGNPWEDFSAIHKKGDKIKGLI 371

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
             I D    + +D  +  L+ +          ++  + AEE++    + YK+G  +   I
Sbjct: 372 KSITDFGVFIGLDGDIDGLVHLSD--------ISWDEKAEEDL----QNYKKGMEIETVI 419

Query: 468 LGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
           L      E ++ GI  L+   F+  + ++       +VKG V  VD+ GA++Q   G++ 
Sbjct: 420 LAIDSERERISLGIKQLEQDPFQEFLASND---KNSLVKGTVKEVDAKGAVIQLAEGIEG 476

Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYA 581
                 ++   +         G E+  + +GV  K+K I ++ K      + A+LS Y+
Sbjct: 477 YLRASELNRDRVDDARNLLTEGDEVEAKFIGVDRKNKTINLSVKAKDDDEEKAVLSDYS 535



 Score = 44.3 bits (103), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L    I++G VKN+T  G FI L   +D  + +++++   V+ P +   IG+ +   
Sbjct: 186  LENLKEGAILKGVVKNLTDYGAFIDLG-GVDGLLHITDMAWKRVKHPSEVIEIGQDIEVL 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            VL  +   KRV + +K    +      +N L    V   + G++  +  YG FI IE+
Sbjct: 245  VLRYDEEKKRVSLGMK----QLGEDPWVNILDRYPVNSKLSGKVTNLTDYGCFIEIED 298



 Score = 43.9 bits (102), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 9/179 (5%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           K + +E     H   K G  +KG + ++  FG  +   G +  L  L  +S  E  +   
Sbjct: 350 KGNPWEDFSAIH---KKGDKIKGLIKSITDFGVFIGLDGDIDGLVHLSDISWDEKAEEDL 406

Query: 541 KKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           + +K G E+   +L + S+R  I++  K+         L+S  + +   +  G + +++ 
Sbjct: 407 QNYKKGMEIETVILAIDSERERISLGIKQLEQDPFQEFLASNDKNS---LVKGTVKEVDA 463

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
            G  ++   G++G+   SEL  D   +  ++   G  V+ + +     ++ INLS   K
Sbjct: 464 KGAVIQLAEGIEGYLRASELNRDRVDDARNLLTEGDEVEAKFIGVDRKNKTINLSVKAK 522


>gi|392954434|ref|ZP_10319985.1| ribosomal protein S1 [Hydrocarboniphaga effusa AP103]
 gi|391857091|gb|EIT67622.1| ribosomal protein S1 [Hydrocarboniphaga effusa AP103]
          Length = 558

 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 22/348 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G+V+KG V  +  +GA V   GG+  L  +  M+   I  P +   VG E+  +V
Sbjct: 187 ANLQEGIVLKGVVKNLVEYGAFVDL-GGIDGLLHITDMTWKRIKDPAEVVTVGQEIEVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    + +R+++  K+      + I   Y E T RL   G +T I  +G FV    GV+G
Sbjct: 246 LKYDRERRRVSLGLKQLGADPWVDIARRYPEKT-RLF--GKVTNITDYGAFVEIEPGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    P+    +GQ V+  I+      RRI+L        P      +  
Sbjct: 303 LVHVSEMDWTNKNINPNKAVTIGQEVEVMILDIDGERRRISLGMKQCVPNPWEEFSQNYQ 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK--PGYEFD 725
           K G  VSG +  +T   V +     G + G     HL+D   +     +V K   G E +
Sbjct: 363 K-GDKVSGQIKSITDFGVFI-----GLNGGIDGLVHLSDLDWNDDGTNAVRKYSKGMEVN 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D+    + L  K    +   Q  ++ +      +V G V  +   G  +   G 
Sbjct: 417 AVVLAIDSARERISLGVKQVAQDPLTQFMAENTK---GQIVKGIVKAVEARGANIELAGG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           + G+   +     +  D +K   VG ++ +  + V+ ++  +TLS+++
Sbjct: 474 VEGYIKANDLSRERVEDATKVLKVGDTLEARFIGVDRKSRIVTLSVRE 521



 Score = 43.9 bits (102), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 152/381 (39%), Gaps = 57/381 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQG 282
           L  +QEG+VL   VK++ ++G  +  G     G L   ++      D    V  G  ++ 
Sbjct: 186 LANLQEGIVLKGVVKNLVEYGAFVDLG--GIDGLLHITDMTWKRIKDPAEVVTVGQEIEV 243

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR----------VQSI 332
            V   DR R+ V L              LK +  D   P + ++ R          V +I
Sbjct: 244 KVLKYDRERRRVSLG-------------LKQLGAD---PWVDIARRYPEKTRLFGKVTNI 287

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL- 391
            + G  +       G V +  +  T    N        ++V   IL +D   R + L + 
Sbjct: 288 TDYGAFVEIEPGVEGLVHVSEMDWTNKNINPNKAVTIGQEVEVMILDIDGERRRISLGMK 347

Query: 392 ----NPY--LLHNRAPPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
               NP+     N      V  ++  I D    + ++ G+  L+ +          +  +
Sbjct: 348 QCVPNPWEEFSQNYQKGDKVSGQIKSITDFGVFIGLNGGIDGLVHLSD--------LDWN 399

Query: 444 DVAEEEVRKLEKKYKEGSCVRVRILGFRHL-EGLATGILKASAFEGLVFTHSDVKPGMVV 502
           D     VRK    Y +G  V   +L      E ++ G+ K  A + L    ++   G +V
Sbjct: 400 DDGTNAVRK----YSKGMEVNAVVLAIDSARERISLGV-KQVAQDPLTQFMAENTKGQIV 454

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR 560
           KG V AV++ GA ++  GGV+       +S   +    K  KVG  L  R +GV  KS+ 
Sbjct: 455 KGIVKAVEARGANIELAGGVEGYIKANDLSRERVEDATKVLKVGDTLEARFIGVDRKSRI 514

Query: 561 ITVTHKKTLVKSKLAILSSYA 581
           +T++ ++  ++ +  I++ Y+
Sbjct: 515 VTLSVREKEIQEEAEIVTEYS 535


>gi|54294307|ref|YP_126722.1| 30S ribosomal protein S1 [Legionella pneumophila str. Lens]
 gi|53754139|emb|CAH15612.1| 30S ribosomal protein S1 [Legionella pneumophila str. Lens]
          Length = 558

 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 156/371 (42%), Gaps = 62/371 (16%)

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            +H    +HG V N+ + G F+  LG + G    +     +    S+   VGQ V+  +L 
Sbjct: 189  LHDGQELHGIVKNLTDYGAFID-LGGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLS 247

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
             +SE  R++L +KQ                             N   +  VE + IG  +
Sbjct: 248  FDSERNRVSLGMKQLG---------------------------NDPWVDLVERYPIGKRL 280

Query: 879  EGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
            +GKV    D+G  V  EE      H     +   +      V  G V+   +L++ +  R
Sbjct: 281  QGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEERR 340

Query: 933  LVDLSLKTVFIDRFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSL 990
             + L +K    + +++ A+++ + +K K K  +  D G+   ++  ++ +V  + +  ++
Sbjct: 341  RISLGMKQCVGNPWQQFASTHNKGEKVKGKIRSITDFGIFIGLDGDIDGLVHLSDISWTV 400

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
            P      G  +V          KQF  GQ + A ++A+       R+ L LK +      
Sbjct: 401  P------GEEAV----------KQFKKGQELEAVILAIDPERE--RISLGLKQL-----E 437

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 1110
                A    +Y  G++V+  +T ++P  + +       G I ++E++D++   V++  + 
Sbjct: 438  GDSFASFAETYTKGAIVKGTVTAVEPKTVTVALAEDVSGTIRVSELSDER---VDDATTI 494

Query: 1111 FKIGQTVTARI 1121
             K+G  V A+I
Sbjct: 495  VKVGDEVEAKI 505



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 146/374 (39%), Gaps = 30/374 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  + G V  +  +GA +   GG+  L  +  +S   +  P +   VG ++  +VL   S
Sbjct: 192 GQELHGIVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFDS 250

Query: 559 KRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +R  V+   K L       L        RL   G +T I  +GCFV    GV+G    SE
Sbjct: 251 ERNRVSLGMKQLGNDPWVDLVERYPIGKRL--QGKVTNITDYGCFVEIEEGVEGLVHMSE 308

Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLV 673
           +   +    PS +  +G VV   ++      RRI+L        P +       K G  V
Sbjct: 309 MDWTNKNVHPSKVVSLGDVVDVMVLEIDEERRRISLGMKQCVGNPWQQFASTHNK-GEKV 367

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-LLVL 730
            G +  +T     +++   G   G +   HL+D        ++V   K G E +  +L +
Sbjct: 368 KGKIRSITDFG--IFIGLDGDIDGLV---HLSDISWTVPGEEAVKQFKKGQELEAVILAI 422

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
           D E   + L  K           S A      ++V G V  +      V     ++G   
Sbjct: 423 DPERERISLGLKQL---EGDSFASFAETYTKGAIVKGTVTAVEPKTVTVALAEDVSGTIR 479

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC----------SSTDA 840
            S+  D +  D +    VG  V + I +++ +   I+LS+K              S T+A
Sbjct: 480 VSELSDERVDDATTIVKVGDEVEAKITNIDRKNRTISLSVKAKDAQDEADAIKKYSRTEA 539

Query: 841 SFMQEHFLLEEKIA 854
           +      LL+EK+A
Sbjct: 540 ASTTLGDLLKEKMA 553



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L     + G VKN+T  G FI L   +D  + ++++S   V+ P +   +G+ V  +
Sbjct: 186  LESLHDGQELHGIVKNLTDYGAFIDLG-GIDGLLHITDISWKRVKHPSEVLSVGQDVKVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VLS +    RV + +K    +  +   ++ +    +G  + G++  +  YG F+ IE
Sbjct: 245  VLSFDSERNRVSLGMK----QLGNDPWVDLVERYPIGKRLQGKVTNITDYGCFVEIE 297


>gi|418321743|ref|ZP_12933082.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VCU006]
 gi|418875415|ref|ZP_13429672.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC93]
 gi|365224358|gb|EHM65623.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           VCU006]
 gi|377769971|gb|EHT93737.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC93]
          Length = 391

 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  + G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKITGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDSNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 170/404 (42%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKITGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D+   +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDSNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  ++G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKITGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDSNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|431931228|ref|YP_007244274.1| 30S ribosomal protein S1 [Thioflavicoccus mobilis 8321]
 gi|431829531|gb|AGA90644.1| ribosomal protein S1 [Thioflavicoccus mobilis 8321]
          Length = 559

 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 149/362 (41%), Gaps = 32/362 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM +KG V  +  +GA +   GG+  L  +  M+   +  P +  ++G +++ +VL
Sbjct: 188 NLEEGMELKGIVKNLTDYGAFLDL-GGIDGLLHITDMAWRRVKHPSEVVEIGDDIMVKVL 246

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               + +R+++  K+      + I   Y E T      G +T I  +GCFV    GV+G 
Sbjct: 247 KFDRERQRVSLGLKQMGEDPWINISRRYPEGTR---VFGKVTNIADYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KL 669
              SE+   +    P+ +  +G  V+  ++      RRI+L      +   ++     K 
Sbjct: 304 VHVSEMDWTNKNVHPTKVVALGDEVEVMVLDIDEERRRISLGIKQCQSNPWDEFAATHKK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQL 727
           G  V+G +  +T   + +     G   G     HL+D    E         K G   + +
Sbjct: 364 GDHVAGEIKSITDFGIFI-----GLDGGIDGLVHLSDISWDESGEQALRRYKKGDRLETV 418

Query: 728 -LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVR 780
            L +D E   + L  K        QL  D      A+H    S+VHG + ++   G  + 
Sbjct: 419 VLSVDPERERISLGVK--------QLDKDPFSTFVAAH-EKGSIVHGTIMDVDPKGATIA 469

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            +  + G+   S+    +  D      VG SV +  + V+ +   I+LS+K        A
Sbjct: 470 LIEGVEGYLRASEISRDRIEDARAVLKVGDSVEAKFVGVDRKNRTISLSIKAKDVDEEQA 529

Query: 841 SF 842
           + 
Sbjct: 530 AI 531



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 127/302 (42%), Gaps = 37/302 (12%)

Query: 373 VNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDRGL 423
           +  ++L  D   + V L L     +P++  +R  P       KV +I D    V ++ G+
Sbjct: 241 IMVKVLKFDRERQRVSLGLKQMGEDPWINISRRYPEGTRVFGKVTNIADYGCFVEIEEGV 300

Query: 424 -GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEGLA 477
            GL+    +D  +  V     V + D  E  V  ++++       R RI LG +  +   
Sbjct: 301 EGLVHVSEMDWTNKNVHPTKVVALGDEVEVMVLDIDEE-------RRRISLGIKQCQ--- 350

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
                ++ ++    TH   K G  V G++ ++  FG  +   GG+  L  L  +S  E  
Sbjct: 351 -----SNPWDEFAATH---KKGDHVAGEIKSITDFGIFIGLDGGIDGLVHLSDISWDESG 402

Query: 538 KPG-KKFKVGAELVFRVLGVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITK 595
           +   +++K G  L   VL V  +R  ++   K L K   +   +  E     I HG I  
Sbjct: 403 EQALRRYKKGDRLETVVLSVDPERERISLGVKQLDKDPFSTFVAAHEKGS--IVHGTIMD 460

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++  G  +    GV+G+   SE+  D   +  ++  VG  V+ + +     +R I+LS  
Sbjct: 461 VDPKGATIALIEGVEGYLRASEISRDRIEDARAVLKVGDSVEAKFVGVDRKNRTISLSIK 520

Query: 656 MK 657
            K
Sbjct: 521 AK 522



 Score = 43.9 bits (102), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 147/376 (39%), Gaps = 47/376 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHF----GLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
           L+ ++EGM L   VK++ D+G  L      GL   T    R     +  +++   ++++ 
Sbjct: 186 LKNLEEGMELKGIVKNLTDYGAFLDLGGIDGLLHITDMAWRRVKHPSEVVEIGDDIMVK- 244

Query: 283 VVRSIDRTRKVVYL-----SSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R+ V L       DP             I+I    P G  V  +V +I + G
Sbjct: 245 -VLKFDRERQRVSLGLKQMGEDP------------WINISRRYPEGTRVFGKVTNIADYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +         +V   +L +D   R + L +     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNVHPTKVVALGDEVEVMVLDIDEERRRISLGIKQCQS 351

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEV 450
           NP+   +    +H K   +  + K +  D G+ + LD           V +SD++ +E  
Sbjct: 352 NPW---DEFAATHKKGDHVAGEIKSI-TDFGIFIGLD-----GGIDGLVHLSDISWDESG 402

Query: 451 RKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
            +  ++YK+G  +   +L     R    L    L    F   V  H   + G +V G ++
Sbjct: 403 EQALRRYKKGDRLETVVLSVDPERERISLGVKQLDKDPFSTFVAAH---EKGSIVHGTIM 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 565
            VD  GA +    GV+       +S   I       KVG  +  + +GV  K++ I+++ 
Sbjct: 460 DVDPKGATIALIEGVEGYLRASEISRDRIEDARAVLKVGDSVEAKFVGVDRKNRTISLSI 519

Query: 566 KKTLVKSKLAILSSYA 581
           K   V  + A +  Y+
Sbjct: 520 KAKDVDEEQAAIKGYS 535



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +++L   M ++G VKN+T  G F+ L   +D  + +++++   V+ P +   IG  +  +
Sbjct: 186  LKNLEEGMELKGIVKNLTDYGAFLDLG-GIDGLLHITDMAWRRVKHPSEVVEIGDDIMVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +   +RV + LK    +      IN       G  V G++  +  YG F+ IE
Sbjct: 245  VLKFDRERQRVSLGLK----QMGEDPWINISRRYPEGTRVFGKVTNIADYGCFVEIE 297


>gi|383481625|ref|YP_005390540.1| 30S ribosomal protein S1 [Rickettsia rhipicephali str.
           3-7-female6-CWPP]
 gi|378933964|gb|AFC72467.1| 30S ribosomal protein S1 [Rickettsia rhipicephali str.
           3-7-female6-CWPP]
          Length = 568

 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 155/361 (42%), Gaps = 20/361 (5%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360

Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                P T+ +E++ V  G+++   +  +T   +  +V       G I    ++   +  
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGP 416

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
            ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   + 
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            + + G  V    ++ GF  R++  D +     + +Y+ + + + ++ +   TGRI LS+
Sbjct: 473 EVKDEGLEVLLNNKVAGFIKRTELSDKKDEQKPEMFYIDEEIEAKVVSIEKSTGRILLSV 532

Query: 831 K 831
           K
Sbjct: 533 K 533



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 131/602 (21%), Positives = 243/602 (40%), Gaps = 103/602 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLALPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +         + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKQMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                  K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + +   
Sbjct: 400  MD--GMIHEGDISWEDKGPDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPY--- 454

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                        +E S +      V A++  VK+  L + L   N   G+   ++ + +K
Sbjct: 455  ------------QEISDEYKKGTIVKALITEVKDEGLEVLL--NNKVAGFIKRTELSDKK 500

Query: 1010 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 1065
              QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G 
Sbjct: 501  DEQKPEMFYIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558

Query: 1066 LV 1067
            ++
Sbjct: 559  IL 560



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
            ++ EK  + L ++  Q+            N  T   E + VG  I   +  +   G+ V 
Sbjct: 348  VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V
Sbjct: 396  LGNNMDGMIH---------EGDISWEDKGP-DLLKSYKKGDEIECKVLAINIEKE---QV 442

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             L ++                   +P  + E  ++     IV+  +  V  +G  ++L+ 
Sbjct: 443  SLGIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLNN 485

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            K+   +  + LSD   E   + F I + +  +V+S+E  + R+ +++K 
Sbjct: 486  KVAGFIKRTELSDKKDEQKPEMFYIDEEIEAKVVSIEKSTGRILLSVKA 534


>gi|347756931|ref|YP_004864493.1| 30S ribosomal protein S1 [Micavibrio aeruginosavorus ARL-13]
 gi|347589449|gb|AEP08491.1| ribosomal protein S1 [Micavibrio aeruginosavorus ARL-13]
          Length = 571

 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 124/541 (22%), Positives = 203/541 (37%), Gaps = 85/541 (15%)

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
           S P   P  V   D+ E  V ++E +  E +  R +         L     K     G++
Sbjct: 66  SRPGEDPE-VKAGDIVEVFVERMENRDGETALSREKARREEVWAELEKSTEKNERVTGVI 124

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F    VK G  V       D  GA+   PG    + P+  +             +G    
Sbjct: 125 FGR--VKGGFTV-------DLGGAVAFLPGSQVDIRPVRDVGPL----------MGTPQP 165

Query: 551 FRVLGVKSKR--ITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYN 607
           F +L +  +R  I V+ +  L +S+ +  S       +  +  G +  I  +G FV    
Sbjct: 166 FHILKMDRQRGNIVVSRRAVLEESRESARSDLLGNLREGQVLTGIVKNITDYGAFVDL-G 224

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           GV G    +++       PS M  +GQ ++ +++     ++RI+L   MK       D +
Sbjct: 225 GVDGLLHVTDISWKRVNHPSEMLTIGQNIQVQVIRYNEENQRISLG--MKQLESDPWDGI 282

Query: 668 K----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG-- 721
                +G  V+G V+ +T     V + +          E L  H+   +  K  + PG  
Sbjct: 283 AAKYPVGQKVTGRVNNITDYGAFVELESG--------IEGLV-HVSEMSWTKKNVHPGKI 333

Query: 722 ----YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
                E +  +L +D E   + L  K +  N  +     A+      V+ G V NI E G
Sbjct: 334 VSTSQEVEVMVLDVDQEKRRISLGLKQTTENPWKDF---AAKNKAGDVLDGEVRNITEFG 390

Query: 777 CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            FV   G + G    S  A D    D  K Y  G +V+  IL+V ++  R+ L +KQ   
Sbjct: 391 LFVGLPGDIDGMVHMSDIAWDVTGEDALKQYNKGDTVKVKILEVEADKERVALGIKQLSG 450

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
              +A  +                          +GF  G+V+   + E    G+ V+  
Sbjct: 451 EDPNAGAL--------------------------DGFNKGAVVTCTITEVTANGLEVNVS 484

Query: 896 EHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
           ++  V GFI    L+    E        G  + A +L   K  R + LS+K   ID  +E
Sbjct: 485 DN--VTGFIKKADLSRERSEQRPDRFAVGEKVDAKVLSADKKSRKLSLSIKQREIDEDKE 542

Query: 949 A 949
           A
Sbjct: 543 A 543



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 15/187 (8%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFR 552
           K G V+ G+V  +  FG  V  PG +  +    HMS+      G    K++  G  +  +
Sbjct: 374 KAGDVLDGEVRNITEFGLFVGLPGDIDGMV---HMSDIAWDVTGEDALKQYNKGDTVKVK 430

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           +L V++ +     +  L   +L+     A A D      +    IT++  +G  V   + 
Sbjct: 431 ILEVEADK----ERVALGIKQLSGEDPNAGALDGFNKGAVVTCTITEVTANGLEVNVSDN 486

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
           V GF  +++L  +   +    + VG+ V  +++S+   SR+++LS   +     ++ +  
Sbjct: 487 VTGFIKKADLSRERSEQRPDRFAVGEKVDAKVLSADKKSRKLSLSIKQREIDEDKEAMAA 546

Query: 669 LGSLVSG 675
            GS  SG
Sbjct: 547 FGSSDSG 553



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 126/598 (21%), Positives = 228/598 (38%), Gaps = 91/598 (15%)

Query: 499  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA----ELVFRVL 554
            G VVKG+VI VDS    V    G+K+   +  + EF   +PG+  +V A    E+    +
Sbjct: 33   GSVVKGRVIGVDS--EFVMIDVGLKSEGRVA-LREFS--RPGEDPEVKAGDIVEVFVERM 87

Query: 555  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRL--ITHGWITKIEKHGCFVRFYNGVQGF 612
              +     ++ +K   +   A L    E  +R+  +  G +      G F     G   F
Sbjct: 88   ENRDGETALSREKARREEVWAELEKSTEKNERVTGVIFGRV-----KGGFTVDLGGAVAF 142

Query: 613  APRSELGLDPGCEPSSM------YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
             P S++ + P  +   +      +H+ ++ + R   +I  SRR  L    +  R      
Sbjct: 143  LPGSQVDIRPVRDVGPLMGTPQPFHILKMDRQR--GNIVVSRRAVLEESRESARSDLLGN 200

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGY 722
            ++ G +++G+V  +T     V +   G   G +   H+ D     + H + M ++   G 
Sbjct: 201  LREGQVLTGIVKNITDYGAFVDL---GGVDGLL---HVTDISWKRVNHPSEMLTI---GQ 251

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETG 776
                Q++  + E+  + L  K        QL SD     A+       V G V NI + G
Sbjct: 252  NIQVQVIRYNEENQRISLGMK--------QLESDPWDGIAAKYPVGQKVTGRVNNITDYG 303

Query: 777  CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
             FV     + G    S+ +   +     K     Q V   +LDV+ E  RI+L LKQ+  
Sbjct: 304  AFVELESGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLDVDQEKRRISLGLKQTTE 363

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
            +        + F  + K                      G V++G+V    +FG+ V   
Sbjct: 364  NP------WKDFAAKNK---------------------AGDVLDGEVRNITEFGLFVGL- 395

Query: 896  EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
               D+ G +    +A       ++ Q    D  K + L       V  D+ R A   +Q 
Sbjct: 396  -PGDIDGMVHMSDIAWDVTGEDALKQYNKGDTVKVKIL------EVEADKERVALGIKQL 448

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK-- 1013
              +     A         V   +  V  N L +++   ++  G+   +D + ++  Q+  
Sbjct: 449  SGEDPNAGALDGFNKGAVVTCTITEVTANGLEVNVS--DNVTGFIKKADLSRERSEQRPD 506

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
            +F  G+ V A V++    S    L +  + I E + + +      S   +G ++ A +
Sbjct: 507  RFAVGEKVDAKVLSADKKSRKLSLSIKQREIDEDKEAMAAFGSSDSGASLGDILGAAL 564


>gi|337285521|ref|YP_004624994.1| 30S ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
 gi|335358349|gb|AEH44030.1| ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
          Length = 567

 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 148/350 (42%), Gaps = 31/350 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            +++ G V++G V ++  +G  V   GGV  L  +  +S   +  P   FKVG ++  +V
Sbjct: 196 ENLEEGQVLEGTVKSITDYGVFVDL-GGVDGLLHVSDISWGRVKHPSNYFKVGDKIKVKV 254

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           +    + ++I +  K+        +   Y E        G +  +   G FV    GV+G
Sbjct: 255 IKYDREKEKIALGIKQLTPDPWETVAEKYPEGKR---IEGKVVSLTNFGAFVELEPGVEG 311

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 669
               SEL      + P  +  VG  V+  ++     +RR++LS   ++P     D LV+ 
Sbjct: 312 LIHISELSWTKRIKHPRDILEVGDKVEVVVLGVDSENRRVSLSLKQVEPN--PWDVLVEQ 369

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGY 722
              G ++   V  VT   V V V+     +G     H++D     ++H +      KPG 
Sbjct: 370 FSEGMVIEAPVKTVTDFGVFVEVM-----EGIDGFIHVSDLSWGRIKHPS---EAYKPGD 421

Query: 723 EFDQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
                +L +D E   L L  K    +  + +P      +P  SVV G V N+ + G FV 
Sbjct: 422 MIQAVILKIDREKEKLALGVKQLTPDPWESVPEK----YPVGSVVTGKVSNVTDFGVFVE 477

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
               + G    S+  D +       +  GQ V++ ++ +  E+ RI LS+
Sbjct: 478 LEEGVEGLVHVSEISDKKVKTPVGMFEPGQEVKAKVVKIEPESRRIGLSI 527



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/415 (20%), Positives = 159/415 (38%), Gaps = 82/415 (19%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            +++ +D + +N+++S +  L   +++   +   ++    V+ G V +I + G FV  LG 
Sbjct: 164  EVVSVDRKKNNVVVSHRNYLEKESERRKKELLENLEEGQVLEGTVKSITDYGVFVD-LGG 222

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    S    G+    S  + VG  ++  ++  + E  +I L +KQ      +     
Sbjct: 223  VDGLLHVSDISWGRVKHPSNYFKVGDKIKVKVIKYDREKEKIALGIKQLTPDPWETV--- 279

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
                                     E +  G  IEGKV    +FG  V  E    V G I
Sbjct: 280  ------------------------AEKYPEGKRIEGKVVSLTNFGAFVELE--PGVEGLI 313

Query: 905  THHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKT-------VFIDRFREA 949
               +L+           +E G  ++  +L V    R V LSLK        V +++F E 
Sbjct: 314  HISELSWTKRIKHPRDILEVGDKVEVVVLGVDSENRRVSLSLKQVEPNPWDVLVEQFSEG 373

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNT 1007
                   K         D GV   V   ++                  G+  VSD  +  
Sbjct: 374  MVIEAPVK------TVTDFGVFVEVMEGID------------------GFIHVSDLSWGR 409

Query: 1008 QKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLV 1067
             K P + +  G  + A ++ +       +L L +K ++     S         Y VGS+V
Sbjct: 410  IKHPSEAYKPGDMIQAVILKIDREKE--KLALGVKQLTPDPWESV-----PEKYPVGSVV 462

Query: 1068 QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
              +++ +    + ++   G  G +H++E++D K   V+     F+ GQ V A+++
Sbjct: 463  TGKVSNVTDFGVFVELEEGVEGLVHVSEISDKK---VKTPVGMFEPGQEVKAKVV 514



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 144/364 (39%), Gaps = 58/364 (15%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL------------PRNNLAENSGIDV 274
           LE ++EG VL   VKSI D+G  +  G     G L            P N       I V
Sbjct: 195 LENLEEGQVLEGTVKSITDYGVFVDLG--GVDGLLHVSDISWGRVKHPSNYFKVGDKIKV 252

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
           K        V   DR ++ + L        K +T D      +    G  +  +V S+  
Sbjct: 253 K--------VIKYDREKEKIALG------IKQLTPDPWETVAEKYPEGKRIEGKVVSLTN 298

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL--- 391
            G  +       G + I  L  T    + ++      KV   +L VD  +R V L+L   
Sbjct: 299 FGAFVELEPGVEGLIHISELSWTKRIKHPRDILEVGDKVEVVVLGVDSENRRVSLSLKQV 358

Query: 392 --NPY-LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
             NP+ +L  +     V    V  + D    V V  G+               ++ +SD+
Sbjct: 359 EPNPWDVLVEQFSEGMVIEAPVKTVTDFGVFVEVMEGID-------------GFIHVSDL 405

Query: 446 AEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVV 502
           +   ++   + YK G  ++  IL   R  E LA G+  L    +E +   +     G VV
Sbjct: 406 SWGRIKHPSEAYKPGDMIQAVILKIDREKEKLALGVKQLTPDPWESVPEKYP---VGSVV 462

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR 560
            GKV  V  FG  V+   GV+ L  +  +S+ ++  P   F+ G E+  +V+ +  +S+R
Sbjct: 463 TGKVSNVTDFGVFVELEEGVEGLVHVSEISDKKVKTPVGMFEPGQEVKAKVVKIEPESRR 522

Query: 561 ITVT 564
           I ++
Sbjct: 523 IGLS 526



 Score = 48.1 bits (113), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 118/282 (41%), Gaps = 48/282 (17%)

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            F +G  +   V+  ++EK+ + L       GI   T D      + +  EG  + G++  
Sbjct: 244  FKVGDKIKVKVIKYDREKEKIAL-------GIKQLTPDPWETVAEKY-PEGKRIEGKVVS 295

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329
            + +   G  V++ P + G +H +EL           + +    P    + G  V+  VL 
Sbjct: 296  LTNF--GAFVELEPGVEGLIHISEL----------SWTKRIKHPRDILEVGDKVEVVVLG 343

Query: 1330 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1389
            +    R    V LSL+         N  D+             +E  S  M+++  VK V
Sbjct: 344  VDSENR---RVSLSLKQV-----EPNPWDVL------------VEQFSEGMVIEAPVKTV 383

Query: 1390 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK- 1448
            T  G F+ +   +D  + +S+LS G ++ P + +  G ++   +L ++   +++ + +K 
Sbjct: 384  TDFGVFVEVMEGIDGFIHVSDLSWGRIKHPSEAYKPGDMIQAVILKIDREKEKLALGVKQ 443

Query: 1449 -TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             T D   +            VG +V G++  V  +G+F+ +E
Sbjct: 444  LTPDPWESVP------EKYPVGSVVTGKVSNVTDFGVFVELE 479



 Score = 44.3 bits (103), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 76/399 (19%), Positives = 161/399 (40%), Gaps = 59/399 (14%)

Query: 1051 SSKRAKKK--SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
             S+R KK+   + + G +++  +  I    + +  G G  G +H+++++  +   V++  
Sbjct: 186  ESERRKKELLENLEEGQVLEGTVKSITDYGVFVDLG-GVDGLLHVSDISWGR---VKHPS 241

Query: 1109 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1168
            + FK+G  +  ++I    + +     + +L+  P   TV+E              G+R+ 
Sbjct: 242  NYFKVGDKIKVKVIKYDREKEKIALGIKQLTPDP-WETVAE----------KYPEGKRIE 290

Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
            G V  + N  A + +   ++  + I + ++    ++  +    +G  V   VL ++ E +
Sbjct: 291  GKVVSLTNFGAFVELEPGVEGLIHISELSWT-KRIKHPRDILEVGDKVEVVVLGVDSENR 349

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGR 1288
             + L L+  +    D  V+           EG ++   +  +     G+ V++   + G 
Sbjct: 350  RVSLSLKQVEPNPWDVLVE--------QFSEGMVIEAPVKTVTDF--GVFVEVMEGIDGF 399

Query: 1289 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348
            +H ++L    +  P   Y  G             ++  +L+I R                
Sbjct: 400  IHVSDLSWGRIKHPSEAYKPGDM-----------IQAVILKIDR---------------- 432

Query: 1349 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1408
                      L     TP       E      +V G V NVT  G F+ L   ++  V +
Sbjct: 433  ----EKEKLALGVKQLTPDPWESVPEKYPVGSVVTGKVSNVTDFGVFVELEEGVEGLVHV 488

Query: 1409 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            S +SD  V++P   F  G+ V  +V+ +EP S+R+ +++
Sbjct: 489  SEISDKKVKTPVGMFEPGQEVKAKVVKIEPESRRIGLSI 527


>gi|332306876|ref|YP_004434727.1| 30S ribosomal protein S1 [Glaciecola sp. 4H-3-7+YE-5]
 gi|410640736|ref|ZP_11351266.1| small subunit ribosomal protein S1 [Glaciecola chathamensis S18K6]
 gi|410648186|ref|ZP_11358600.1| small subunit ribosomal protein S1 [Glaciecola agarilytica NO2]
 gi|332174205|gb|AEE23459.1| ribosomal protein S1 [Glaciecola sp. 4H-3-7+YE-5]
 gi|410132205|dbj|GAC06999.1| small subunit ribosomal protein S1 [Glaciecola agarilytica NO2]
 gi|410139764|dbj|GAC09453.1| small subunit ribosomal protein S1 [Glaciecola chathamensis S18K6]
          Length = 579

 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 143/348 (41%), Gaps = 24/348 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 209 ANLEEGHEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 267

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+        I   Y E +      G +T +  +GCFV   +GV+G
Sbjct: 268 LKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSK---LSGAVTNLTDYGCFVEIEDGVEG 324

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 669
               SE+   +    PS + ++G  V+  ++      RRI+L     KP    E    K 
Sbjct: 325 LVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEE--FAKA 382

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEF 724
              G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E 
Sbjct: 383 QSKGDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNKTGEDAVREYKKGDEI 437

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
              +L +D E   + L  K    +   Q  +D       ++V G V  +   G  V+   
Sbjct: 438 SAVVLQVDPERERISLGVKQIEEDPFNQYLTDTKK---GTIVVGTVTEVDAKGVTVKLAE 494

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G+   +     +  D S+   VG  + +  + V+ +   + LS+K
Sbjct: 495 EVEGYIRVTDLARERVEDASEVASVGDEIEAKFMGVDRKNRIVNLSVK 542


>gi|314936391|ref|ZP_07843738.1| ribosomal protein S1 [Staphylococcus hominis subsp. hominis C80]
 gi|313655010|gb|EFS18755.1| ribosomal protein S1 [Staphylococcus hominis subsp. hominis C80]
          Length = 392

 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V GKV  V+    +V   G     + P+  +S   I  P +    G E+   
Sbjct: 11  NDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEIDEENESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFE-GQTIRLKVEELDPENNRVILS--RKAVEQAENDVKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 ASLLDSLNEGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVQSPEDVVSV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E D ++  ++ ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQEVDVKVKSVEKDTERISLSIKDTLPTPFENI---KGKFHENDVIEGKVIRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+         S+    GQ V   IL ++ +  RI+LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEDNERISLSIKATL 351



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 188  LDSLNEGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVQSPEDVVSVGQEVDVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  ++R+ +++K     T      N     H  D++ G++ R+ ++G F+ I
Sbjct: 247  VKSVEKDTERISLSIKD----TLPTPFENIKGKFHENDVIEGKVIRLANFGAFVEI 298



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 116/290 (40%), Gaps = 55/290 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV++    Y+ G IP   L+ H  H      +I  G E + 
Sbjct: 13  IKEGDKVTGKVQQVEDKQVVVHIDGAKYN-GIIPISQLSTH--HIENPSEIISEGDEIEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +    +D E+     S  Y L  S +QL ++ S+      +  + V+   V  +++ G 
Sbjct: 70  YVTKIEIDEENE----SGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFEGQTIRLKVEELDPENNRVILSRKAVEQAE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D           +K ++L S                G VI+GKV    +FG  V     
Sbjct: 180 NDV----------KKASLLDSLNE-------------GDVIKGKVARLTNFGAFVDI--- 213

Query: 898 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 214 GGVDGLVHVSELSHEHVQSPE-------DVVSVGQEVDVKVKSVEKDTER 256



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 161/393 (40%), Gaps = 80/393 (20%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ +ED   ++H     + G +P + L+    EN    +  G  ++  V 
Sbjct: 13  IKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAYVT 72

Query: 285 -----------------RSIDRTRKVVYLSS--DPDTVSKC-VTKDLKG-ISIDL----L 319
                            R ++  +   YL    D D V +  VT+ +KG + +D+     
Sbjct: 73  KIEIDEENESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDVGQRGF 132

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           VP  ++ST           +   + F G      ++   P  N             R++ 
Sbjct: 133 VPASLISTD---------FIEDFSVFEGQTIRLKVEELDPENN-------------RVIL 170

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
              + +AV    N   +   +    +  GD+  + KV R+    G  +DI          
Sbjct: 171 ---SRKAVEQAEND--VKKASLLDSLNEGDVI-KGKVARL-TNFGAFVDIGGVD----GL 219

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLV--FTHS 494
           V +S+++ E V+  E     G  V V++    +  E ++  I     + FE +   F  +
Sbjct: 220 VHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDTERISLSIKDTLPTPFENIKGKFHEN 279

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           DV     ++GKVI + +FGA V+   GV+ L  +  ++   I  P +  + G ++  ++L
Sbjct: 280 DV-----IEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKIL 334

Query: 555 GV--KSKRITVTHKKTL-----VKSKLAILSSY 580
           G+   ++RI+++ K TL     ++S  A   SY
Sbjct: 335 GIDEDNERISLSIKATLPNEDVIESDEATTQSY 367


>gi|90416549|ref|ZP_01224480.1| 30S ribosomal protein S1 [gamma proteobacterium HTCC2207]
 gi|90331748|gb|EAS46976.1| 30S ribosomal protein S1 [gamma proteobacterium HTCC2207]
          Length = 557

 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 150/361 (41%), Gaps = 32/361 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  +KG +  +  +GA V   GG+  L  +  MS   I  P +   VG E+  +V
Sbjct: 187 ANLEEGASLKGVIKNLTDYGAFVDL-GGIDGLLHITDMSWKRIKHPSEMINVGDEIDVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+        I   Y E          IT +  +GCF    +GV+G
Sbjct: 246 LKFDRERNRVSLGMKQMGEDPWGDIKGRYPEGAR---AKAKITNLTDYGCFAELEDGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---DLV 667
               SE+   +    PS + ++G  V+  ++      RRI+L      T   +D    +V
Sbjct: 303 LVHVSEMDWTNKNVHPSKIVNLGDEVEVMVLDIDEERRRISLGIKQCHTNPWDDFATTMV 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  +SG +  +T   + +     G   G     HL+D   + T  ++V   K G E +
Sbjct: 363 K-GDKISGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNETGEEAVRNFKKGEEVE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFV 779
             +L +D E   + L  K        QL  D   +++  N   ++V G V  +   G  V
Sbjct: 417 TVVLSIDAERERISLGIK--------QLSDDPFNNYVTENDKGAIVKGIVKEVDAKGATV 468

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                +  +   S+    +  D       GQ + + I++V+ +T  I+LS+K    +   
Sbjct: 469 DLGNDIEAYLKGSELSRDKVEDARHELQEGQEIEAKIINVDRKTRAISLSVKAKDVAEEK 528

Query: 840 A 840
           A
Sbjct: 529 A 529


>gi|384135335|ref|YP_005518049.1| RNA binding S1 domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius Tc-4-1]
 gi|339289420|gb|AEJ43530.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius Tc-4-1]
          Length = 392

 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 147/359 (40%), Gaps = 33/359 (9%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 15  MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 74

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 604
             +VL V  +   VT  K     + A  +S  E   RL+  G   ++E     K G    
Sbjct: 75  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQRLLESGEPIEVEIRDVVKGGLVAD 129

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 130 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVIEVDPQKNKLILSRRAVLEEESEA 185

Query: 665 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 717
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 186 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 239

Query: 718 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
           ++ G     ++L +D E+  + LS K +L    +     A    P  VV G V  +++ G
Sbjct: 240 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFQPGDVVQGVVRRVLDFG 296

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            FV     L G    S+ +  +R D  S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 297 AFVELRPGLEGLVHVSQ-ISNERVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 354



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 133/338 (39%), Gaps = 55/338 (16%)

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1210
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 15   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 68

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 69   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQRLLESGEPIEVEIRDV 121

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
            + G  GLV  +G   +               P S  D    + L  + +GQ ++ KV+E+
Sbjct: 122  VKG--GLVADVGVRAF--------------IPASLVDRHFVENLEQF-KGQKLRAKVIEV 164

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                       LS R+ L+  S   +  L              E+L P  +++G V+ +T
Sbjct: 165  DPQKNKLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLT 208

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
              G F+ +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +
Sbjct: 209  DFGAFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA 267

Query: 1451 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                  +           GD+V G ++RV  +G F+ +
Sbjct: 268  ----LPEPWETYAHEFQPGDVVQGVVRRVLDFGAFVEL 301



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 36/363 (9%)

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 275
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 12  LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 69

Query: 276 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 70  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQR-----LLESGEPIEVEIRDVVKG 124

Query: 336 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 125 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVIEVDPQKNKLILSRR 176

Query: 393 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 177 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 230

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
             V    +  +EG  V+VR+L      G  +  +KA+  E       + +PG VV+G V 
Sbjct: 231 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVR 290

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 565
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 291 RVLDFGAFVELRPGLEGLVHVSQISNERVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 350

Query: 566 KKT 568
           + +
Sbjct: 351 RDS 353



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 156/390 (40%), Gaps = 63/390 (16%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 1122
            G +V  E+T +    + +    G+ G I   E++        ++ S   +G TVTA+++ 
Sbjct: 24   GDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVS---VGSTVTAQVLK 80

Query: 1123 --AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
               +S    + K    + S    M  + E G  +  E  DV  G  V     +     +L
Sbjct: 81   VDMESGHVTLSKRRAEQASAWERMQRLLESGEPIEVEIRDVVKGGLVADVGVRAFIPASL 140

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
              + RH     F+         L++F+     G+ +   V+ ++ +K  L L  R     
Sbjct: 141  --VDRH-----FV-------ENLEQFK-----GQKLRAKVIEVDPQKNKLILSRR----A 177

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            + ++  +     +   +  GD++ G + ++     G  V +G    G VH +EL    V+
Sbjct: 178  VLEEESEARARKLFEELKPGDVIEGTVQRLTDF--GAFVDVG-GADGLVHISELSFSHVN 234

Query: 1301 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             P     EG             VK +VL +         + LS++++L     T +    
Sbjct: 235  HPSEVVREGDR-----------VKVRVLRVDPE---AGRISLSIKAALPEPWETYA---- 276

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
                          +  P  +VQG V+ V   G F+ L   L+  V +S +S+  V+ P 
Sbjct: 277  -------------HEFQPGDVVQGVVRRVLDFGAFVELRPGLEGLVHVSQISNERVDKPS 323

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
                 G+ V  RVLSV+P  KR+ ++++ S
Sbjct: 324  DVLQPGQEVTVRVLSVDPERKRISLSMRDS 353


>gi|317050911|ref|YP_004112027.1| RNA-binding S1 domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945995|gb|ADU65471.1| RNA binding S1 domain protein [Desulfurispirillum indicum S5]
          Length = 544

 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 132/543 (24%), Positives = 221/543 (40%), Gaps = 80/543 (14%)

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG-LATGILKA 483
           +LLDI          V  S+  +EE  +L    K G    V   G R   G +     KA
Sbjct: 46  ILLDINE---KVEGVVQRSEFTDEEFERL----KTGDTFEVFNTGRREDSGFIRASKQKA 98

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
               G     +  + G + +G ++ V + G  V    GV+A  PL  +   ++    ++ 
Sbjct: 99  DQRRGWDDIVAGFEEGRLFEGTIVDVVNRGFTVNI-NGVRAFLPLSQVDLRQVRDNPEEM 157

Query: 544 K--VGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAE--ATDRLITHGWITKIE 597
           +  VG    F+V+ V  KR  + V+ +  L + K        E      L+T G +  I 
Sbjct: 158 RTYVGLTGQFKVINVSPKRHNVVVSRRAPLEEEKNKAKQQLIEKLVPGSLLT-GRVKNIT 216

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           ++G F+    G  G    +++       PS+++  G  V+  ++   P + R++L +  K
Sbjct: 217 EYGVFIDL-GGFDGLLHITDISWGRVSHPSAVFSEGDEVEVVVLDFNPQNERVSLGYKQK 275

Query: 658 PTRVSED------DLVKLGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
               S+D      +  + G++V G VV  V   A V   I  G  +G I   H+++    
Sbjct: 276 ----SDDPWNNIAERCECGTVVKGKVVSFVDYGAFVE--IEPGI-EGLI---HISEMSWT 325

Query: 711 ATVMK--SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVV 765
           + V     V+K G E + ++L +D+E+  L LS +    N     P D     +P  +VV
Sbjct: 326 SRVRSPSQVLKIGDEVEVRILDIDSENRRLSLSLRAVRPN-----PWDVVGERYPVGTVV 380

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G + NI E G F+     + G    S     +    S+   VG  V + +L  + E  R
Sbjct: 381 KGKIKNITEFGAFLGLDEGVDGLIHISDMSWSRSNHPSEIVKVGDEVEAKVLAFDREKER 440

Query: 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
           ++L LKQ   +  D    Q                           F IGS + G V   
Sbjct: 441 LSLGLKQLEENPWDVVEKQ---------------------------FPIGSRVSGTVVNL 473

Query: 886 NDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSL 938
            DFG  V  E+   V G +   +++   +E        G  I+AA++ ++K +R + LS+
Sbjct: 474 TDFGAFVKLEDG--VEGLLHVSEISHDRIERPSDVLSVGQQIEAAVIKMSKEDRRIGLSM 531

Query: 939 KTV 941
           K V
Sbjct: 532 KEV 534



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV---DIFHLQNTFPTTNWKNDYNQHKK 372
           I+ LVPG +++ RV++I E GV +  L  F G +   DI   + + P+      +++  +
Sbjct: 199 IEKLVPGSLLTGRVKNITEYGVFID-LGGFDGLLHITDISWGRVSHPSAV----FSEGDE 253

Query: 373 VNARILFVDPTSRAVGL-----TLNPYL-LHNRAPPSHV---KVGDIYDQSKVVRVDRGL 423
           V   +L  +P +  V L     + +P+  +  R     V   KV    D    V ++ G+
Sbjct: 254 VEVVVLDFNPQNERVSLGYKQKSDDPWNNIAERCECGTVVKGKVVSFVDYGAFVEIEPGI 313

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
             L+ I     ++             VR   +  K G  V VRIL         +  L+A
Sbjct: 314 EGLIHISEMSWTS------------RVRSPSQVLKIGDEVEVRILDIDSENRRLSLSLRA 361

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
                          G VVKGK+  +  FGA +    GV  L  +  MS      P +  
Sbjct: 362 VRPNPWDVVGERYPVGTVVKGKIKNITEFGAFLGLDEGVDGLIHISDMSWSRSNHPSEIV 421

Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           KVG E+  +VL    + +R+++  K+ L ++   ++        R+   G +  +   G 
Sbjct: 422 KVGDEVEAKVLAFDREKERLSLGLKQ-LEENPWDVVEKQFPIGSRV--SGTVVNLTDFGA 478

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           FV+  +GV+G    SE+  D    PS +  VGQ ++  ++      RRI LS 
Sbjct: 479 FVKLEDGVEGLLHVSEISHDRIERPSDVLSVGQQIEAAVIKMSKEDRRIGLSM 531



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 149/407 (36%), Gaps = 84/407 (20%)

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
            P S++ G V NI E G F+  LG   G    +    G+ +  S  +  G  V   +LD N
Sbjct: 204  PGSLLTGRVKNITEYGVFID-LGGFDGLLHITDISWGRVSHPSAVFSEGDEVEVVVLDFN 262

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSV 877
             +  R++L  KQ                               S+  W    E    G+V
Sbjct: 263  PQNERVSLGYKQK------------------------------SDDPWNNIAERCECGTV 292

Query: 878  IEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
            ++GKV    D+G  V  E       H     + +  +     ++ G  ++  ILD+    
Sbjct: 293  VKGKVVSFVDYGAFVEIEPGIEGLIHISEMSWTSRVRSPSQVLKIGDEVEVRILDIDSEN 352

Query: 932  RLVDLSLKTVFIDRF-----REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 986
            R + LSL+ V  + +     R         K K   E    LG+ + V+ ++ I      
Sbjct: 353  RRLSLSLRAVRPNPWDVVGERYPVGTVVKGKIKNITEFGAFLGLDEGVDGLIHISD---- 408

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
             +S    NH               P +    G  V A V+A        RL L LK + E
Sbjct: 409  -MSWSRSNH---------------PSEIVKVGDEVEAKVLAFDREKE--RLSLGLKQLEE 450

Query: 1047 TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 1106
                  ++      + +GS V   +  +      +K   G  G +H++E++ D+   +E 
Sbjct: 451  NPWDVVEK-----QFPIGSRVSGTVVNLTDFGAFVKLEDGVEGLLHVSEISHDR---IER 502

Query: 1107 LFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
                  +GQ + A +I K +K D +        I  SM  V E G++
Sbjct: 503  PSDVLSVGQQIEAAVI-KMSKEDRR--------IGLSMKEVGEGGAE 540



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 105/492 (21%), Positives = 192/492 (39%), Gaps = 103/492 (20%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 1121
            G +VQA + +    E+ L       G +  +E  D++   ++  + F  F  G+   +  
Sbjct: 31   GRIVQATVVQKNDSEILLDINEKVEGVVQRSEFTDEEFERLKTGDTFEVFNTGRREDSGF 90

Query: 1122 I-AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
            I A   K D ++   W+      ++   E G   LFE   V +  R  G+   ++   A 
Sbjct: 91   IRASKQKADQRRG--WD-----DIVAGFEEGR--LFEGTIVDVVNR--GFTVNINGVRAF 139

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR---PF 1237
            L +S     Q+ +      P E+     R ++G  +TG    IN   K   +V+    P 
Sbjct: 140  LPLS-----QVDLRQVRDNPEEM-----RTYVG--LTGQFKVINVSPKRHNVVVSRRAPL 187

Query: 1238 QDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
            ++          N   Q  I +   G ++ GR+  I     G+ + +G    G +H T++
Sbjct: 188  EEE--------KNKAKQQLIEKLVPGSLLTGRVKNITEY--GVFIDLG-GFDGLLHITDI 236

Query: 1295 KNICVSDPLSGYDEGQ--------FDPLS-----GYDE---------------GQFVKCK 1326
                VS P + + EG         F+P +     GY +               G  VK K
Sbjct: 237  SWGRVSHPSAVFSEGDEVEVVVLDFNPQNERVSLGYKQKSDDPWNNIAERCECGTVVKGK 296

Query: 1327 VL---------EISRTVRGTFHV-ELSLRSSLDGMSST----NSSDLST-DVDTPGKHLE 1371
            V+         EI   + G  H+ E+S  S +   S      +  ++   D+D+  + L 
Sbjct: 297  VVSFVDYGAFVEIEPGIEGLIHISEMSWTSRVRSPSQVLKIGDEVEVRILDIDSENRRLS 356

Query: 1372 -KIEDLSPN------------MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1418
              +  + PN             +V+G +KN+T  G F+ L   +D  + +S++S      
Sbjct: 357  LSLRAVRPNPWDVVGERYPVGTVVKGKIKNITEFGAFLGLDEGVDGLIHISDMSWSRSNH 416

Query: 1419 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1478
            P +   +G  V  +VL+ +   +R+ + LK  +       E        +G  V G +  
Sbjct: 417  PSEIVKVGDEVEAKVLAFDREKERLSLGLKQLEENPWDVVE----KQFPIGSRVSGTVVN 472

Query: 1479 VESYGLFITIEN 1490
            +  +G F+ +E+
Sbjct: 473  LTDFGAFVKLED 484


>gi|21646202|gb|AAM71534.1| ribosomal protein S1 [Chlorobium tepidum TLS]
          Length = 550

 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 151/354 (42%), Gaps = 40/354 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +  ++   +   V
Sbjct: 178 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVV 236

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYA---EATDRLITHGWITKIEKHGCFVRFYNG 608
           +G    +KR+++  K+        I   Y    +AT R+++      I  +G FV    G
Sbjct: 237 VGFDENTKRVSLGMKQLEAHPWENIEIKYPVGIKATGRVVS------ITDYGAFVEIEKG 290

Query: 609 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           ++G    SE+      + PS    + Q V+  I++      +++LS      RVSED  +
Sbjct: 291 IEGLVHISEMSWTQHIKHPSQFVSLNQEVEVVILNIDKEHTKLSLSM----KRVSEDPWI 346

Query: 668 KL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKS 716
            L      GSL  G V  +T   V V +       G     H++D      + H +    
Sbjct: 347 ALSEKYVEGSLHKGTVSNITDFGVFVEL-----EPGVDGLVHISDLSWTKKIRHPS---E 398

Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           ++K G E + ++L  D  +  + L  K   IN+      +  +    +   G +  IIE 
Sbjct: 399 LVKKGQELEVKVLKFDVNARRIALGHKQ--INNDPWGEFEQKY-AVGAECTGAISQIIEK 455

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           G  V   G + GF P S  + G   D+  ++ +G  +   +++ + E  RI LS
Sbjct: 456 GVIVILPGEVDGFVPVSHLLQGGVKDIHSSFKIGDELPLRVIEFDKENKRIILS 509



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             K  E + ++   M+++G VKN+T  G F+ L   LD  V +++++ G +  P +   + 
Sbjct: 171  AKREEMLANIKVGMVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVELD 229

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + +   V+  +  +KRV + +K  ++      EI       VG    G++  +  YG F+
Sbjct: 230  QPIKVVVVGFDENTKRVSLGMKQLEAHPWENIEI----KYPVGIKATGRVVSITDYGAFV 285

Query: 1487 TIE 1489
             IE
Sbjct: 286  EIE 288


>gi|161485730|ref|NP_661192.2| 30S ribosomal protein S1 [Chlorobium tepidum TLS]
          Length = 583

 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 151/354 (42%), Gaps = 40/354 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +  ++   +   V
Sbjct: 211 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVV 269

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYA---EATDRLITHGWITKIEKHGCFVRFYNG 608
           +G    +KR+++  K+        I   Y    +AT R+++      I  +G FV    G
Sbjct: 270 VGFDENTKRVSLGMKQLEAHPWENIEIKYPVGIKATGRVVS------ITDYGAFVEIEKG 323

Query: 609 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           ++G    SE+      + PS    + Q V+  I++      +++LS      RVSED  +
Sbjct: 324 IEGLVHISEMSWTQHIKHPSQFVSLNQEVEVVILNIDKEHTKLSLSM----KRVSEDPWI 379

Query: 668 KL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKS 716
            L      GSL  G V  +T   V V +       G     H++D      + H +    
Sbjct: 380 ALSEKYVEGSLHKGTVSNITDFGVFVEL-----EPGVDGLVHISDLSWTKKIRHPS---E 431

Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           ++K G E + ++L  D  +  + L  K   IN+      +  +    +   G +  IIE 
Sbjct: 432 LVKKGQELEVKVLKFDVNARRIALGHKQ--INNDPWGEFEQKYA-VGAECTGAISQIIEK 488

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           G  V   G + GF P S  + G   D+  ++ +G  +   +++ + E  RI LS
Sbjct: 489 GVIVILPGEVDGFVPVSHLLQGGVKDIHSSFKIGDELPLRVIEFDKENKRIILS 542



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             K  E + ++   M+++G VKN+T  G F+ L   LD  V +++++ G +  P +   + 
Sbjct: 204  AKREEMLANIKVGMVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVELD 262

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + +   V+  +  +KRV + +K  ++      EI       VG    G++  +  YG F+
Sbjct: 263  QPIKVVVVGFDENTKRVSLGMKQLEAHPWENIEI----KYPVGIKATGRVVSITDYGAFV 318

Query: 1487 TIE 1489
             IE
Sbjct: 319  EIE 321


>gi|343525165|ref|ZP_08762121.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
           pharyngis SK1060 = CCUG 46377]
 gi|423068486|ref|ZP_17057274.1| hypothetical protein HMPREF9682_00495 [Streptococcus intermedius
           F0395]
 gi|343397037|gb|EGV09573.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
           pharyngis SK1060 = CCUG 46377]
 gi|355366741|gb|EHG14458.1| hypothetical protein HMPREF9682_00495 [Streptococcus intermedius
           F0395]
          Length = 399

 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 157/366 (42%), Gaps = 41/366 (11%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        ++VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDANQANVAIAGTGVEGVLTLRELTNDRDADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 656
           K G  V F  G++GF P S L  D     ++   VGQ  + +I    P   R  LS   +
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFEAKIKEVDPKENRFILSRREV 175

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-- 714
              + +       G L  G  D+VT        +A+  S G        D L H T +  
Sbjct: 176 VEAQAAAARAEVFGKLAVG--DIVTGK------VARITSFGAFIDLGGVDGLVHLTELSH 227

Query: 715 ------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 765
                 KSV+  G E + ++L L+ E   + LS K +        P D     +    V+
Sbjct: 228 ERNVSPKSVVSVGDEIEVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVI 282

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN++  R
Sbjct: 283 EGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAER 342

Query: 826 ITLSLK 831
           ++LS+K
Sbjct: 343 VSLSIK 348



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++     + R++LS      R +++D
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERPAQED 358



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 34/200 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GDEIEVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQSE 1459
            ++RV +++K  + R A + +
Sbjct: 340  AERVSLSIKALEERPAQEDD 359



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 41/220 (18%)

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           +V G V  I   G F+  LG + G    ++    +         VG  +   +LD+N E 
Sbjct: 196 IVTGKVARITSFGAFID-LGGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNEEE 254

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
           GR++LSLK +     D         +E+K+A                    G VIEG V 
Sbjct: 255 GRVSLSLKATTPGPWDG--------VEQKLAA-------------------GDVIEGTVK 287

Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVD 935
              DFG  V  E    + G +   Q++   VE+       G  +   +LDV A AER V 
Sbjct: 288 RLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAER-VS 344

Query: 936 LSLKTVFIDRFREAN--SNRQAQKKKRKREASKDLGVHQT 973
           LS+K +     +E +    RQ++ +++KR+  +D  + +T
Sbjct: 345 LSIKALEERPAQEDDQKEKRQSRPRRQKRQEKRDFELPET 384



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V L+ LS     SP+    +G  +  +VL 
Sbjct: 191  LAVGDIVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLD 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 250  LNEEEGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|383487345|ref|YP_005405025.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. GvV257]
 gi|383500586|ref|YP_005413946.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. RpGvF24]
 gi|380757710|gb|AFE52947.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. GvV257]
 gi|380758283|gb|AFE53519.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. RpGvF24]
          Length = 568

 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 155/362 (42%), Gaps = 24/362 (6%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           IL+ S  E      S +K G+V++G V  +  +GA +   G V  L  L  +S   +  P
Sbjct: 186 ILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +   ++   V+    K+KRI++  K+       AI   +          G +T   
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301

Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            +G F+   +G++G    SE+  L     P  +  +GQ V+  ++       R++LS   
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKILTIGQEVEFIVLEVDTEKHRVSLSI-- 359

Query: 657 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
              +  E+ L+K      +G+++   +  +T   +  +V+      G I    ++     
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
             ++KS  K G E + ++L ++ E   + L  K  L N  Q++   +      ++V   V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQKI---SDEYKKGTIVKAVV 471

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             I + G  V    ++TGF  R +  D +     + + V + + + ++ +   TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLS 531

Query: 830 LK 831
           +K
Sbjct: 532 IK 533



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 136/612 (22%), Positives = 248/612 (40%), Gaps = 107/612 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR+ L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ GVV  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGIVLEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
            F+Q     ++  D ++  + L  K    N     P DA          + G V N  + G
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304

Query: 777  CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
             F+     L G    S+ +      +  K   +GQ V   +L+V++E  R++LS+KQ C 
Sbjct: 305  VFLELKDGLEGLVHSSEISWLKSNQNPRKILTIGQEVEFIVLEVDTEKHRVSLSIKQ-C- 362

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                    QE+ L                 +K+ E   IG++I+  +    DFG+ V   
Sbjct: 363  --------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVLG 397

Query: 896  EHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             + D  G I    ++          + + G  I+  +L +   +  V L +K +  + ++
Sbjct: 398  NNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQ 455

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
            + +   +                   V A+V  +K++ LV+ L   N   G+    + + 
Sbjct: 456  KISDEYKK---------------GTIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELSD 498

Query: 1008 QKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDV 1063
            +K  QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++
Sbjct: 499  EKDEQKPEMFKVHEEIDAKVVSIEKST--GRVLLSIKAHKIAERQKTLKEYGSSDNTTNM 556

Query: 1064 GSLVQAEITEIK 1075
            G ++   + E K
Sbjct: 557  GDILANVLEEKK 568


>gi|386831027|ref|YP_006237681.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus HO 5096 0412]
 gi|417800230|ref|ZP_12447354.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21310]
 gi|418657631|ref|ZP_13219396.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-105]
 gi|334271696|gb|EGL90079.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21310]
 gi|375030367|gb|EHS23685.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-105]
 gi|385196419|emb|CCG16047.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus HO 5096 0412]
          Length = 391

 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ +  ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIHIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 47.4 bits (111), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIHIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 43.9 bits (102), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 110/303 (36%), Gaps = 67/303 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++   + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIHIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
           +       V G +        H Q     V  G  ++  I  + +    + LS+K     
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267

Query: 945 RFR 947
            F 
Sbjct: 268 PFE 270



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|429462693|ref|YP_007184156.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium crithidii (ex Angomonas deanei
           ATCC 30255)]
 gi|451811552|ref|YP_007448007.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium crithidii TCC036E]
 gi|429338207|gb|AFZ82630.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium crithidii (ex Angomonas deanei
           ATCC 30255)]
 gi|451776710|gb|AGF47709.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium crithidii TCC036E]
          Length = 570

 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 157/362 (43%), Gaps = 24/362 (6%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+AS  E       ++  G VVKG V  +  +GA +   GGV  L  +  M+   +  P
Sbjct: 182 VLEASVGEERQKLLENLYEGAVVKGVVKNITDYGAFIDL-GGVDGLLHITDMAWRRVRHP 240

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +V  E+  +VL    +  R+++  K+      + +   Y + T RL   G +T + 
Sbjct: 241 SEVLQVCQEIEAKVLKFDQEKNRVSLGVKQLGEDPWVDLSRRYPQGT-RLF--GKVTNLT 297

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            +G FV   +G++G    SE+   +   +P  +  +G  V+  ++      RRI+L   M
Sbjct: 298 DYGAFVEVESGIEGLVHVSEMDWTNKNVDPRKVVTLGDEVEIMVLEIDEERRRISLG--M 355

Query: 657 KPTRVS--EDDLV--KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEH 710
           K  RV+  E+  V  K G  V G +  +T   + V     G   G     HL+D    + 
Sbjct: 356 KQCRVNPWEEFAVNFKKGDKVKGAIKSITDFGIFV-----GLPGGIDGLVHLSDLSWTDS 410

Query: 711 ATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
              +   +K G E + +++ +D     + L  K  + +  Q     ASH    SVV G +
Sbjct: 411 GEEIVRALKKGDEIEAVVLGIDTSKERISLGVKQLVNDPFQDFV--ASH-DKGSVVSGII 467

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            ++   G  V     +  +   S+   G+  D +     G +V + IL+++ +   I LS
Sbjct: 468 KSVEPKGAIVTLAPEVDAYLRSSEISSGKVEDATSILKAGNNVDAMILNIDKKARSIQLS 527

Query: 830 LK 831
           +K
Sbjct: 528 VK 529



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 130/304 (42%), Gaps = 45/304 (14%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           +++ A++L  D     V L +     +P++  +R  P       KV ++ D    V V+ 
Sbjct: 248 QEIEAKVLKFDQEKNRVSLGVKQLGEDPWVDLSRRYPQGTRLFGKVTNLTDYGAFVEVES 307

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ D  E  V +++++       R RI LG +    
Sbjct: 308 GIEGLVHVSEMDWTNKNVDPRKVVTLGDEVEIMVLEIDEE-------RRRISLGMKQC-- 358

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF- 534
                 + + +E       + K G  VKG + ++  FG  V  PGG+  L  L  +S   
Sbjct: 359 ------RVNPWEEFAV---NFKKGDKVKGAIKSITDFGIFVGLPGGIDGLVHLSDLSWTD 409

Query: 535 ---EIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
              EIV+  KK   G E+   VLG+ +  +RI++  K+ +       ++S+ + +   + 
Sbjct: 410 SGEEIVRALKK---GDEIEAVVLGIDTSKERISLGVKQLVNDPFQDFVASHDKGS---VV 463

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G I  +E  G  V     V  +   SE+      + +S+   G  V   I++    +R 
Sbjct: 464 SGIIKSVEPKGAIVTLAPEVDAYLRSSEISSGKVEDATSILKAGNNVDAMILNIDKKARS 523

Query: 650 INLS 653
           I LS
Sbjct: 524 IQLS 527


>gi|4454544|gb|AAD20942.1| apoptosis-linked gene 4, F form [Mus musculus]
          Length = 225

 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 761
           L+DH  +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I P
Sbjct: 1   LSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQP 60

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             ++ G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+ 
Sbjct: 61  GMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDE 120

Query: 822 ETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSV 877
              R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V
Sbjct: 121 SKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMV 180

Query: 878 IEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
           ++  VHE   D  VV S +   D+    + +  AG  VE G
Sbjct: 181 LDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPG 221



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+++PGM++ G V  +  +G  VQFP G+  L P   MS+  +  P + F  G  +V +V
Sbjct: 56  SEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKV 115

Query: 554 LGVKSKR 560
             V   +
Sbjct: 116 TNVDESK 122



 Score = 43.9 bits (102), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 46/85 (54%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
            G+  + + ++ P M++ G+VK +   G F+     L      + +SD +V +P + F  G
Sbjct: 49   GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEG 108

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSD 1451
            + V  +V +V+   +R+ ++L+ SD
Sbjct: 109  QTVVAKVTNVDESKQRMLLSLRLSD 133


>gi|193213834|ref|YP_001995033.1| 30S ribosomal protein S1 [Chloroherpeton thalassium ATCC 35110]
 gi|193087311|gb|ACF12586.1| ribosomal protein S1 [Chloroherpeton thalassium ATCC 35110]
          Length = 616

 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 146/351 (41%), Gaps = 34/351 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +   +   +   V
Sbjct: 215 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRISHPSEAVNLDDPIKVVV 273

Query: 554 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           +G  +  +R+++  K+        I   Y   T      G +  I  +G FV    G++G
Sbjct: 274 IGYDADKQRVSLGMKQLTPHPWENIEEKYPAGTR---VTGKVVSITDYGAFVEIEKGIEG 330

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
               SE+      + P+    +GQ V+C I++      +++LS  MK T   ED  + L 
Sbjct: 331 LVHISEMSWTQHIKHPNQFVTMGQEVECVILNIDKEHTKLSLS--MKQTE--EDPWIVLA 386

Query: 671 ------SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
                 S   G+V  +T   V V +       G     H++D      + H +    ++K
Sbjct: 387 EKYPVDSEHKGIVRNITDFGVFVEL-----ESGVDGLVHISDLSWTKKIRHPS---EIVK 438

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
              E D ++L  D ++  + L  K    +      +D +     +   G +  IIE G  
Sbjct: 439 KNQELDVKVLKFDVKARRIALGHKQIEPDPWSDFENDYA---VGTETKGKIAQIIEKGVI 495

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           V     + GF P S  + G   D++ ++ VG  +   +++ + E  RI LS
Sbjct: 496 VELPSGVDGFVPASHLLQGGVRDINASFKVGDELPLKVIEFDRENKRIILS 546



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 144/354 (40%), Gaps = 37/354 (10%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
           L  ++ GMVL   VK+I D G  +  G     G +   ++    G    P   +     +
Sbjct: 214 LANIKVGMVLEGTVKNITDFGIFVDLG--GLDGLVHITDIT--WGRISHPSEAV-----N 264

Query: 287 IDRTRKVVYLSSDPDTVSKCVTKDLKGIS------IDLLVP-GMMVSTRVQSILENGVML 339
           +D   KVV +  D D   + V+  +K ++      I+   P G  V+ +V SI + G  +
Sbjct: 265 LDDPIKVVVIGYDAD--KQRVSLGMKQLTPHPWENIEEKYPAGTRVTGKVVSITDYGAFV 322

Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY 394
                  G V I  +  T    +        ++V   IL +D     + L++     +P+
Sbjct: 323 EIEKGIEGLVHISEMSWTQHIKHPNQFVTMGQEVECVILNIDKEHTKLSLSMKQTEEDPW 382

Query: 395 LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKL 453
           ++     P         +   +VR     G+ +++ S        V ISD++  +++R  
Sbjct: 383 IVLAEKYPVD------SEHKGIVRNITDFGVFVELES---GVDGLVHISDLSWTKKIRHP 433

Query: 454 EKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
            +  K+   + V++L F      +A G  +        F  +D   G   KGK+  +   
Sbjct: 434 SEIVKKNQELDVKVLKFDVKARRIALGHKQIEPDPWSDF-ENDYAVGTETKGKIAQIIEK 492

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
           G IV+ P GV    P  H+ +  +      FKVG EL  +V+    ++KRI ++
Sbjct: 493 GVIVELPSGVDGFVPASHLLQGGVRDINASFKVGDELPLKVIEFDRENKRIILS 546


>gi|194335601|ref|YP_002017395.1| 30S ribosomal protein S1 [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308078|gb|ACF42778.1| RNA binding S1 domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 592

 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 145/353 (41%), Gaps = 38/353 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +   +   +   V
Sbjct: 211 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVV 269

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           +G    +KR+++  K+        I   Y   +      G +  I  +G FV    G++G
Sbjct: 270 VGFDENTKRVSLGMKQLESHPWENIEVKYPVTSK---AQGRVVSITDYGAFVEIEKGIEG 326

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               SE+      + P     +GQ V+C I++      +++LS      RV+ED  + L 
Sbjct: 327 LVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHTKLSLSM----KRVNEDPWIALS 382

Query: 670 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
                GSL  G V  +T   V V +       G     H++D      + H +    ++K
Sbjct: 383 EKYIEGSLHKGTVSNITDFGVFVEL-----EPGVDGLVHISDLSWTKKIRHPS---ELVK 434

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
              + + ++L  D  +  + L  K        Q P D         +   G +  IIE G
Sbjct: 435 KNQDLEVKVLKFDVHARRIALGHK-----QINQDPWDEFEQKYAVGAETPGEISQIIEKG 489

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             V   G + GF P S  + G   D+  ++ +G ++   +++ + E  RI LS
Sbjct: 490 VIVILPGDVDGFVPVSHLLQGGVKDIHSSFKIGDALPLRVIEFDKENKRIILS 542


>gi|449129160|ref|ZP_21765391.1| ribosomal protein S1 [Treponema denticola SP37]
 gi|448946002|gb|EMB26867.1| ribosomal protein S1 [Treponema denticola SP37]
          Length = 811

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 144/357 (40%), Gaps = 41/357 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV- 553
           + K G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V 
Sbjct: 439 NTKIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVI 497

Query: 554 -LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            L  ++KRI ++ K       L     +    D ++T G +TK    G F+    G++G 
Sbjct: 498 RLDPENKRINLSLKHFTQDPWLQFEEKFH--VDDIVT-GTVTKTTDFGAFIELDEGIEGL 554

Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
           A  SE   +    +P  +   G  V C I+     + R++L        P    E+    
Sbjct: 555 AHISEFSWVKKINKPEDILKPGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTIEERYPV 614

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYEFD 725
              L   VV +    A              I  E   D   HA   + +K V  PG E +
Sbjct: 615 GTRLTRKVVKITNAGAF-------------ISLEEGIDGFLHADDISWIKRVKHPGSELE 661

Query: 726 -----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
                +++V+  D ES  + L  K    +  ++     +     S+V G V +I + G F
Sbjct: 662 VGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKF---GAAYKVGSIVEGEVSSITDFGVF 718

Query: 779 VRFLGRLTGFAPRSKAVDGQ----RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+  G + G   +   V+ +       L+K Y VG  +++ ++++N    +   S+K
Sbjct: 719 VKVPGDIEGLIHKQNLVESRDETPEEALAK-YAVGDKIKAVVIEINPRNKKTAFSIK 774



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 115/554 (20%), Positives = 209/554 (37%), Gaps = 109/554 (19%)

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           + +E  + G ++A   E  +      + G + +G V+AV++    V   G  +   PL  
Sbjct: 245 KDVEKDSNGNIQAQLQEEYLNNFEAPEAGTIKEGYVVAVNNGTVFVDVGGKSEGHIPLDE 304

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLIT 589
             E    +P    KV  ++   +   +S    ++  K L   +L +   + +A  D+   
Sbjct: 305 FDE----EP----KVNDKVNVLIEKTESSNGHLSVSK-LKADRLILQKEFKQAYADKTPI 355

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQV-VKCRIMS 642
            G I K  + G  V+   G+  F P S+  +    +P ++      +++ ++    R   
Sbjct: 356 DGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLVGVKSKFYIEKLSFNSRSGE 415

Query: 643 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           +I  +RR  +    +  R +     K+G  V G V   T     + +   G   G +   
Sbjct: 416 NIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTVKSFTSFGAFIDL---GGFDGLL--- 469

Query: 703 HLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           H+ D    H T  K  +K G E + +++ LD E+  + LS K+   +   Q        H
Sbjct: 470 HINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKRINLSLKHFTQDPWLQF---EEKFH 526

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSN 815
            + +V G V    + G F+     + G A  S     K ++ +  D+ K    G  V   
Sbjct: 527 VDDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKIN-KPEDILKP---GDKVTCM 582

Query: 816 ILDVNSETGRITLSLKQSCCSSTD----------------------ASFMQ-----EHFL 848
           IL  + + GR++L LKQ   +  D                       +F+      + FL
Sbjct: 583 ILGYDIQAGRVSLGLKQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFL 642

Query: 849 LEEKIAMLQSSKHNGSEL---------------------------------KWVEGFIIG 875
             + I+ ++  KH GSEL                                 K+   + +G
Sbjct: 643 HADDISWIKRVKHPGSELEVGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVG 702

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAIL 925
           S++EG+V    DFGV V      D+ G I    L  +  E+          G  I+A ++
Sbjct: 703 SIVEGEVSSITDFGVFVKV--PGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVI 760

Query: 926 DVAKAERLVDLSLK 939
           ++    +    S+K
Sbjct: 761 EINPRNKKTAFSIK 774



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P +K
Sbjct: 446  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENK 504

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK        Q E       HV DIV G + +   +G FI ++
Sbjct: 505  RINLSLKHFTQDPWLQFE----EKFHVDDIVTGTVTKTTDFGAFIELD 548


>gi|194334594|ref|YP_002016454.1| 30S ribosomal protein S1 [Prosthecochloris aestuarii DSM 271]
 gi|194312412|gb|ACF46807.1| RNA binding S1 domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 588

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 143/349 (40%), Gaps = 30/349 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +  ++   +   V
Sbjct: 213 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVV 271

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           +G    +KR+++  K+        I   Y   T    T+G +  I  +G FV    G++G
Sbjct: 272 VGFDEDTKRVSLGMKQLEPHPWENIEIKYPVGTK---TNGRVVSITDYGAFVEIEKGIEG 328

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               SE+      + PS    +GQ V+  I++      +++LS      RV+ED  + L 
Sbjct: 329 LVHISEMSWTQHIKHPSQFVSLGQEVEVVILNIDKDHTKLSLSM----KRVTEDPWIALS 384

Query: 670 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
                 SL  G V  +T   V V +       G     H++D     +  K +  P    
Sbjct: 385 EKYIEASLHKGTVSNITDFGVFVEL-----EPGVDGLVHISD----LSWTKKIRHPSELV 435

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV----HGYVCNIIETGCFVR 780
            +   L+ +     ++A+   +   Q  P           V     G +  IIE G  V 
Sbjct: 436 KKNQDLEVKVLKFDVNARRIALGHKQINPDPWDEFEQKYAVGAECAGEISQIIEKGVIVI 495

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             G + GF P S  + G   D+  ++ VG ++   +++ + E  RI LS
Sbjct: 496 LPGDVDGFVPVSHLLQGGVKDIHTSFKVGDALPLRVIEFDKENKRIILS 544



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 117/271 (43%), Gaps = 14/271 (5%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGVK 557
           G    G+V+++  +GA V+   G++ L  +  MS  + +K P +   +G E+   +L + 
Sbjct: 303 GTKTNGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLGQEVEVVILNID 362

Query: 558 SK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
               +++++ K+      +A+   Y EA+   +  G ++ I   G FV    GV G    
Sbjct: 363 KDHTKLSLSMKRVTEDPWIALSEKYIEAS---LHKGTVSNITDFGVFVELEPGVDGLVHI 419

Query: 616 SELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLGSL 672
           S+L        PS +    Q ++ +++     +RRI L    + P    E +    +G+ 
Sbjct: 420 SDLSWTKKIRHPSELVKKNQDLEVKVLKFDVNARRIALGHKQINPDPWDEFEQKYAVGAE 479

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
            +G +  +    V+  VI  G   G +P  HL         + +  K G     +++  D
Sbjct: 480 CAGEISQIIEKGVI--VILPGDVDGFVPVSHLLQG--GVKDIHTSFKVGDALPLRVIEFD 535

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPN 762
            E+  ++LSA     + +++   +    HPN
Sbjct: 536 KENKRIILSALEYFKDKSKEEIEEYLQAHPN 566



 Score = 41.6 bits (96), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             K  E + ++   M+++G VKN+T  G F+ L   LD  V +++++ G +  P +   + 
Sbjct: 206  AKREEMLANIKVGMVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVELD 264

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + +   V+  +  +KRV + +K  +       EI       VG    G++  +  YG F+
Sbjct: 265  QPIKVVVVGFDEDTKRVSLGMKQLEPHPWENIEI----KYPVGTKTNGRVVSITDYGAFV 320

Query: 1487 TIE 1489
             IE
Sbjct: 321  EIE 323


>gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
           DSM 13941]
 gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 411

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G V +G V +V  FGA V   GG   L  L  +S   +  P +  K G ++   V
Sbjct: 230 SALKEGDVREGVVTSVCDFGAFVDI-GGADGLVHLSELSWSRVKHPSEILKPGDKVQVYV 288

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L +  + KRI ++ K+T  +    +   Y       +  G +T++   G FVR  +GV+G
Sbjct: 289 LSIDNERKRIALSLKRTQHEPWATVGERYHIGQ---MVEGVVTQLAPFGAFVRIEDGVEG 345

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
               SE+G      P  +   G  V+ RI+   PA +RI LS      R S DD +
Sbjct: 346 LIHVSEMGDGRVQHPRDVLQEGDAVQARIIRIDPARKRIGLSM-----RQSSDDQI 396



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 139/361 (38%), Gaps = 36/361 (9%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-----IVKPGKKFKVGA 547
           + +++ G  V G ++ V     +V      + + P   M          +KPG       
Sbjct: 49  YRNLQYGDTVDGIIMRVGRDEILVDIGAKAEGVVPAREMQSLSDDDRAALKPGDPL---- 104

Query: 548 ELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
            LVF V    K  R T++  +   +     L    E  +  I    +    K G  V   
Sbjct: 105 -LVFVVQSEDKEGRATLSIDRARQEKSWRRLQQCYETGE--IIEAKVINYNKGGLLVNL- 160

Query: 607 NGVQGFAPRSEL-GLDPGCEPSSMYH----VGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
           +GV+GF P S++ G+  G E          VGQ +  +++       R+ LS       V
Sbjct: 161 DGVRGFVPSSQVSGIGRGSEAQKQSEMARMVGQTLALKVIEINRNRNRLILSERQAAMDV 220

Query: 662 SED------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVM 714
            E         +K G +  GVV  V      V +   G + G +    L+   ++H +  
Sbjct: 221 REGRKGELLSALKEGDVREGVVTSVCDFGAFVDI---GGADGLVHLSELSWSRVKHPS-- 275

Query: 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
             ++KPG +    +L +DNE   + LS K +     +   +     H   +V G V  + 
Sbjct: 276 -EILKPGDKVQVYVLSIDNERKRIALSLKRT---QHEPWATVGERYHIGQMVEGVVTQLA 331

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G FVR    + G    S+  DG+          G +V++ I+ ++    RI LS++QS
Sbjct: 332 PFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEGDAVQARIIRIDPARKRIGLSMRQS 391

Query: 834 C 834
            
Sbjct: 392 S 392



 Score = 44.3 bits (103), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G V  +   G F+ +   ++  + +S + DG V+ P      G  V  R++ ++P  
Sbjct: 322  MVEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEGDAVQARIIRIDPAR 381

Query: 1441 KRVEVTLK-TSDSRTASQS 1458
            KR+ ++++ +SD + A QS
Sbjct: 382  KRIGLSMRQSSDDQIAHQS 400



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 21/171 (12%)

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ +  KV+EI+R       + LS R +            + DV   G+  E +  L   
Sbjct: 192  GQTLALKVIEINRN---RNRLILSERQA------------AMDV-REGRKGELLSALKEG 235

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             + +G V +V   G F+ +    D  V LS LS   V+ P +    G  V   VLS++  
Sbjct: 236  DVREGVVTSVCDFGAFVDIG-GADGLVHLSELSWSRVKHPSEILKPGDKVQVYVLSIDNE 294

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             KR+ ++LK    RT  +         H+G +V G + ++  +G F+ IE+
Sbjct: 295  RKRIALSLK----RTQHEPWATVGERYHIGQMVEGVVTQLAPFGAFVRIED 341


>gi|418964829|ref|ZP_13516617.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
           constellatus SK53]
 gi|383344230|gb|EID22399.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
           constellatus SK53]
          Length = 399

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 156/366 (42%), Gaps = 41/366 (11%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        ++VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDANQANVAIAGTGVEGVLTLRELTNDRDADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 656
           K G  V F  G++GF P S L  D     ++   VGQ  + +I    P   R  LS   +
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFEAKIKEVDPKENRFILSRREV 175

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-- 714
              + +       G L  G         +V+  +A+  S G        D L H T +  
Sbjct: 176 VEAQAAAARAEVFGKLAVG--------DIVIGKVARITSFGAFIDLGGVDGLVHLTELSH 227

Query: 715 ------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 765
                 KSV+  G E + ++L L+ E   + LS K +        P D     +    V+
Sbjct: 228 ERNVSPKSVVSVGDEIEVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVI 282

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN++  R
Sbjct: 283 EGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAER 342

Query: 826 ITLSLK 831
           ++LS+K
Sbjct: 343 VSLSIK 348



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVIGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++     + R++LS      R +++D
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERPAQED 358



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 34/200 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVIGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GDEIEVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQSE 1459
            ++RV +++K  + R A + +
Sbjct: 340  AERVSLSIKALEERPAQEDD 359



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 41/220 (18%)

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           +V G V  I   G F+  LG + G    ++    +         VG  +   +LD+N E 
Sbjct: 196 IVIGKVARITSFGAFID-LGGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNEEE 254

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
           GR++LSLK +     D         +E+K+A                    G VIEG V 
Sbjct: 255 GRVSLSLKATTPGPWDG--------VEQKLAA-------------------GDVIEGTVK 287

Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVD 935
              DFG  V  E    + G +   Q++   VE+       G  +   +LDV A AER V 
Sbjct: 288 RLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAER-VS 344

Query: 936 LSLKTVFIDRFREAN--SNRQAQKKKRKREASKDLGVHQT 973
           LS+K +     +E +    RQ++ +++KR+  +D  + +T
Sbjct: 345 LSIKALEERPAQEDDQKEKRQSRPRRQKRQEKRDFELPET 384



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V L+ LS     SP+    +G  +  +VL 
Sbjct: 191  LAVGDIVIGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLD 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 250  LNEEEGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|315918254|ref|ZP_07914494.1| LytB protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692129|gb|EFS28964.1| LytB protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 545

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 27/254 (10%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMSSIPASR 648
            G +T++  +G FV    GV+G    S+   +        Y  VG+ VK +I+   P  R
Sbjct: 286 EGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEGR 345

Query: 649 RINLSF---MMKPTRVSEDDLVKLGSLVSGVVDV-------VTPNAVVVYVIAKGYSKGT 698
           ++ L F   +  P  V+E+   +   L + ++D+          + V V+V +  +    
Sbjct: 346 KLKLGFKQLVENPWDVAEEKFAEGKELTATILDIKPFGLFAEIESGVDVFVHSSDFG--- 402

Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            P +  A++    T+   V+       +L V D +    + + K S  + A +       
Sbjct: 403 WPGDEPANYQVGDTISFKVL-------ELNVEDKKIKGSIKALKKSPWDKAME------E 449

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
               + V   + NI++ G FV     + GF P   A      DL   + +GQ V++ I++
Sbjct: 450 YKVGTTVEKKIKNIMDFGLFVELSKGIDGFIPTQFASKDFVKDLKDKFEIGQVVKAQIVE 509

Query: 819 VNSETGRITLSLKQ 832
           +N ET +I LS+K+
Sbjct: 510 INQETQKIKLSIKK 523



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 78/383 (20%), Positives = 165/383 (43%), Gaps = 58/383 (15%)

Query: 1110 NFKIGQTVTAR---IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1166
            N K G+ +  +   +I K  K D +     +++     +T+ + G +       +++G  
Sbjct: 144  NEKDGEAMVGKNIDVIVKDIKQDSRDKRSKKITFSKKDITLMKEGEEF----AKLTVGDV 199

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
            VT  V  +  ++ L  +  HL+   FI  S      L + +  + +G+ V   +LS+++E
Sbjct: 200  VTCTVSGI-MDFGLSVMIDHLRG--FIHISEVSWKRLDDLRDLYTVGQTVEAKILSLDEE 256

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            KK ++L ++     ++    D+S D      HEGD V G+++++L+   G  V++   + 
Sbjct: 257  KKNIKLSIKQ----LTPNPWDLSKDAF----HEGDEVEGKVTRVLA--YGAFVELTEGVE 306

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1346
            G VH ++            +++ + +       G+ VK K+LE +   R    ++L  + 
Sbjct: 307  GLVHISDF----------AWNKKRINMEEYAKVGETVKVKILEFNPEGR---KLKLGFKQ 353

Query: 1347 SLDGMSSTNSSDLSTDVDTPGKHL-EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1405
             ++     N  D++ +    GK L   I D+ P              G F  +   +D  
Sbjct: 354  LVE-----NPWDVAEEKFAEGKELTATILDIKPF-------------GLFAEIESGVDVF 395

Query: 1406 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1465
            V  S+   G+       + +G  ++ +VL +    K+++ ++K        ++    +  
Sbjct: 396  VHSSDF--GWPGDEPANYQVGDTISFKVLELNVEDKKIKGSIKALKKSPWDKA----MEE 449

Query: 1466 LHVGDIVIGQIKRVESYGLFITI 1488
              VG  V  +IK +  +GLF+ +
Sbjct: 450  YKVGTTVEKKIKNIMDFGLFVEL 472



 Score = 43.5 bits (101), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 84/411 (20%), Positives = 156/411 (37%), Gaps = 29/411 (7%)

Query: 189 VGQLVSCIVLQLDDDKKEIGKRKIWLSLR-LSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           VG+ +  IV  +  D ++   +KI  S + ++L+ +G     +  G V+T  V  I D G
Sbjct: 152 VGKNIDVIVKDIKQDSRDKRSKKITFSKKDITLMKEGEEFAKLTVGDVVTCTVSGIMDFG 211

Query: 248 YILHFGLPSFTGFLPRNNLAENSGIDVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTV 303
             L   +    GF+  + ++     D++     G  ++  + S+D  +K + LS      
Sbjct: 212 --LSVMIDHLRGFIHISEVSWKRLDDLRDLYTVGQTVEAKILSLDEEKKNIKLSI----- 264

Query: 304 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
            K +T +   +S D    G  V  +V  +L  G  +       G V I          N 
Sbjct: 265 -KQLTPNPWDLSKDAFHEGDEVEGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINM 323

Query: 364 KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL 423
           +      + V  +IL  +P  R + L     L+ N    +  K  +  + +  +   +  
Sbjct: 324 EEYAKVGETVKVKILEFNPEGRKLKLGFKQ-LVENPWDVAEEKFAEGKELTATILDIKPF 382

Query: 424 GLLLDIPSTPVSTPAYVTISDVA---EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
           GL  +I S       +V  SD     +E        Y+ G  +  ++L     +    G 
Sbjct: 383 GLFAEIES---GVDVFVHSSDFGWPGDEPAN-----YQVGDTISFKVLELNVEDKKIKGS 434

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           +KA           + K G  V+ K+  +  FG  V+   G+    P    S+  +    
Sbjct: 435 IKALKKSPWDKAMEEYKVGTTVEKKIKNIMDFGLFVELSKGIDGFIPTQFASKDFVKDLK 494

Query: 541 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
            KF++G  +  +++ +  +    T K  L   K+ +     E  D L  +G
Sbjct: 495 DKFEIGQVVKAQIVEINQE----TQKIKLSIKKIELEEQKREDQDLLAKYG 541


>gi|449116354|ref|ZP_21752805.1| ribosomal protein S1 [Treponema denticola H-22]
 gi|448954241|gb|EMB35024.1| ribosomal protein S1 [Treponema denticola H-22]
          Length = 811

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 144/357 (40%), Gaps = 41/357 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV- 553
           + K G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V 
Sbjct: 439 NTKIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVI 497

Query: 554 -LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            L  ++KRI ++ K       L     +    D ++T G +TK    G F+    G++G 
Sbjct: 498 RLDPENKRINLSLKHFTQDPWLQFEEKFH--VDDIVT-GTVTKTTDFGAFIELDEGIEGL 554

Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
           A  SE   +    +P  +   G  V C I+     + R++L        P    E+    
Sbjct: 555 AHISEFSWVKKINKPEDILKPGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTIEERYPV 614

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYEFD 725
              L   VV +    A              I  E   D   HA   + +K V  PG E +
Sbjct: 615 GTRLTRKVVKITNAGAF-------------ISLEEGIDGFLHADDISWIKRVKHPGSELE 661

Query: 726 -----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
                +++V+  D ES  + L  K    +  ++     +     S+V G V +I + G F
Sbjct: 662 VGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKF---GAAYKVGSIVEGEVSSITDFGVF 718

Query: 779 VRFLGRLTGFAPRSKAVDGQ----RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+  G + G   +   V+ +       L+K Y VG  +++ ++++N    +   S+K
Sbjct: 719 VKVPGDIEGLIHKQNLVESRDETPEEALAK-YAVGDKIKAVVIEINPRNKKTAFSIK 774



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 115/554 (20%), Positives = 209/554 (37%), Gaps = 109/554 (19%)

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           + +E  + G ++A   E  +      + G + +G V+AV++    V   G  +   PL  
Sbjct: 245 KDVEKDSNGNIQAQLQEEYLNNFEAPEAGTIKEGHVVAVNNGTVFVDVGGKSEGHIPLDE 304

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLIT 589
             E    +P    KV  ++   +   +S    ++  K L   +L +   + +A  D+   
Sbjct: 305 FDE----EP----KVNDKVNVLIEKTESSNGHLSVSK-LKADRLILQKEFKQAYADKTPI 355

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQV-VKCRIMS 642
            G I K  + G  V+   G+  F P S+  +    +P ++      +++ ++    R   
Sbjct: 356 DGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLVGVKSKFYIEKLSFNSRSGE 415

Query: 643 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           +I  +RR  +    +  R +     K+G  V G V   T     + +   G   G +   
Sbjct: 416 NIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTVKSFTSFGAFIDL---GGFDGLL--- 469

Query: 703 HLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           H+ D    H T  K  +K G E + +++ LD E+  + LS K+   +   Q        H
Sbjct: 470 HINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKRINLSLKHFTQDPWLQF---EEKFH 526

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSN 815
            + +V G V    + G F+     + G A  S     K ++ +  D+ K    G  V   
Sbjct: 527 VDDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKIN-KPEDILKP---GDKVTCM 582

Query: 816 ILDVNSETGRITLSLKQSCCSSTD----------------------ASFMQ-----EHFL 848
           IL  + + GR++L LKQ   +  D                       +F+      + FL
Sbjct: 583 ILGYDIQAGRVSLGLKQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFL 642

Query: 849 LEEKIAMLQSSKHNGSEL---------------------------------KWVEGFIIG 875
             + I+ ++  KH GSEL                                 K+   + +G
Sbjct: 643 HADDISWIKRVKHPGSELEVGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVG 702

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAIL 925
           S++EG+V    DFGV V      D+ G I    L  +  E+          G  I+A ++
Sbjct: 703 SIVEGEVSSITDFGVFVKV--PGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVI 760

Query: 926 DVAKAERLVDLSLK 939
           ++    +    S+K
Sbjct: 761 EINPRNKKTAFSIK 774



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P +K
Sbjct: 446  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENK 504

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK        Q E       HV DIV G + +   +G FI ++
Sbjct: 505  RINLSLKHFTQDPWLQFE----EKFHVDDIVTGTVTKTTDFGAFIELD 548


>gi|402852024|ref|ZP_10900134.1| SSU ribosomal protein S1p [Rhodovulum sp. PH10]
 gi|402497708|gb|EJW09510.1| SSU ribosomal protein S1p [Rhodovulum sp. PH10]
          Length = 552

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 153/353 (43%), Gaps = 34/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            +++ G V+ G V  +  +GA V   GG+  L  +  ++   +  P +   +G ++  ++
Sbjct: 180 QNLEEGQVIDGVVKNITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPSEVLNIGQQVKVKI 238

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + +  ++ RI++  K+        I + Y  AT RL+  G +T I  +G FV    G++G
Sbjct: 239 IKINHETHRISLGMKQLQADPWQGIEAKYPVAT-RLM--GRVTNITDYGAFVELEPGIEG 295

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+        P  +    Q V+ +++   P  RRI+L     M  P  V  +   
Sbjct: 296 LIHVSEMSWTKKNVHPGKIVSTSQEVEVQVLEVDPVKRRISLGLKQTMRNPWEVFVEKYP 355

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-- 725
             GS+V G  +V       +++   G   G +   HL+D L+     + VI+   + D  
Sbjct: 356 P-GSVVEG--EVKNKTEFGLFLGLDGDVDGMV---HLSD-LDWKRPGEQVIEEFKKGDHV 408

Query: 726 --QLLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHPNSVVHGYVCNIIETGCFV 779
             Q+L +D E   + L  K        QL  D    A  +   +V+   V ++ E G  V
Sbjct: 409 RAQVLDVDVEKERISLGIK--------QLEGDPFAEAGDVRKGAVITCEVTDVKEGGIDV 460

Query: 780 RFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + +G  L  F  RS+    +       + VGQ V + +   + ++ ++ +S+K
Sbjct: 461 KIVGTDLAAFIKRSELARDRSEQRPDRFAVGQKVDARVTQFDRKSHKVQVSIK 513



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 197/490 (40%), Gaps = 77/490 (15%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI------VKPGKKFK 544
           FT  +++ G V+KG V+A++   A++    G+K    +P + EF+       +K G   +
Sbjct: 6   FTQGNLQEGTVIKGTVVAIEKDLAVIDV--GLKTEGRVP-LREFQAPGRQNEIKVGDTVE 62

Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI---EKHGC 601
           V  E V   LG          +  L + K     S+ +      ++  ++ +   +  G 
Sbjct: 63  VYLERVENALG----------EAVLSRDKARREESWGKLEKAFQSNEKVSGVIFNQVKGG 112

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMK 657
           F    +G   F PRS++ + P  + + + +V Q  +     R   +I  SRR  L     
Sbjct: 113 FTVDLDGAVAFLPRSQVDIRPIRDVTPLMNVPQQFQILKMDRRRGNIVVSRRTVLEETRA 172

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKS 716
             R      ++ G ++ GVV  +T     V +   G   G +    +A   + H +    
Sbjct: 173 EQRQELVQNLEEGQVIDGVVKNITDYGAFVDL---GGIDGLLHVTDIAWRRVNHPS---E 226

Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV-VHGYVCNIIE 774
           V+  G +   +++ +++E+  + L  K    +  Q + +     +P +  + G V NI +
Sbjct: 227 VLNIGQQVKVKIIKINHETHRISLGMKQLQADPWQGIEAK----YPVATRLMGRVTNITD 282

Query: 775 TGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G FV     + G    S+ +   +     K     Q V   +L+V+    RI+L LKQ+
Sbjct: 283 YGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQVLEVDPVKRRISLGLKQT 342

Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             +  +                            +VE +  GSV+EG+V    +FG+ + 
Sbjct: 343 MRNPWEV---------------------------FVEKYPPGSVVEGEVKNKTEFGLFLG 375

Query: 894 FEEHSDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
            +   DV G +    L     G  V    + G  ++A +LDV   +  + L +K +  D 
Sbjct: 376 LD--GDVDGMVHLSDLDWKRPGEQVIEEFKKGDHVRAQVLDVDVEKERISLGIKQLEGDP 433

Query: 946 FREANSNRQA 955
           F EA   R+ 
Sbjct: 434 FAEAGDVRKG 443



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 93/445 (20%), Positives = 174/445 (39%), Gaps = 81/445 (18%)

Query: 726  QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            Q+L +D    N+++S +  L  + A+Q      ++    V+ G V NI + G FV  LG 
Sbjct: 148  QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVD-LGG 206

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    +     +    S+   +GQ V+  I+ +N ET RI+L +KQ            
Sbjct: 207  IDGLLHVTDIAWRRVNHPSEVLNIGQQVKVKIIKINHETHRISLGMKQ------------ 254

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
                       LQ+    G E K    + + + + G+V    D+G  V  E       H 
Sbjct: 255  -----------LQADPWQGIEAK----YPVATRLMGRVTNITDYGAFVELEPGIEGLIHV 299

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT-------VFIDRFREANS 951
                +   +   G  V +   ++  +L+V   +R + L LK        VF++++   + 
Sbjct: 300  SEMSWTKKNVHPGKIVSTSQEVEVQVLEVDPVKRRISLGLKQTMRNPWEVFVEKYPPGSV 359

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
                 + K K E    LG+   V+ +V +                      SD + ++  
Sbjct: 360  VE--GEVKNKTEFGLFLGLDGDVDGMVHL----------------------SDLDWKRPG 395

Query: 1012 QK---QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
            ++   +F  G  V A V+ +       R+ L +K +     + +   +K      G+++ 
Sbjct: 396  EQVIEEFKKGDHVRAQVLDVDVEKE--RISLGIKQLEGDPFAEAGDVRK------GAVIT 447

Query: 1069 AEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
             E+T++K   + +K  G      I  +E+  D+S   E     F +GQ V AR+     K
Sbjct: 448  CEVTDVKEGGIDVKIVGTDLAAFIKRSELARDRS---EQRPDRFAVGQKVDARVTQFDRK 504

Query: 1128 PDMKKSFLWELSIKPSMLTVSEIGS 1152
                +  +  L +      +++ GS
Sbjct: 505  SHKVQVSIKALEVAEEKEAIAQYGS 529



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 139/341 (40%), Gaps = 69/341 (20%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ + G V  + +  A + +   +   L + D A+     PSE+       +IG+ V   
Sbjct: 185  GQVIDGVVKNITDYGAFVDLG-GIDGLLHVTDIAWRRVNHPSEV------LNIGQQVKVK 237

Query: 1220 VLSINKEKKLLRLVLRPFQ----DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            ++ IN E   + L ++  Q     GI  K   ++   M           GR++ I     
Sbjct: 238  IIKINHETHRISLGMKQLQADPWQGIEAK-YPVATRLM-----------GRVTNITDY-- 283

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
            G  V++ P + G +H +E+           + +    P       Q V+ +VLE+    R
Sbjct: 284  GAFVELEPGIEGLIHVSEMS----------WTKKNVHPGKIVSTSQEVEVQVLEVDPVKR 333

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                + L L+ ++      N  ++             +E   P  +V+G VKN T  G F
Sbjct: 334  ---RISLGLKQTM-----RNPWEVF------------VEKYPPGSVVEGEVKNKTEFGLF 373

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEK---EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            + L   +D  V LS+L   +    E+   EF  G  V  +VL V+   +R+ + +K  + 
Sbjct: 374  LGLDGDVDGMVHLSDLD--WKRPGEQVIEEFKKGDHVRAQVLDVDVEKERISLGIKQLEG 431

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
               +++      ++  G ++  ++  V+  G+ + I  T+L
Sbjct: 432  DPFAEA-----GDVRKGAVITCEVTDVKEGGIDVKIVGTDL 467



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 22/189 (11%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK----FKVGAELVFRV 553
           PG VV+G+V     FG  +   G V  +    H+S+ +  +PG++    FK G  +  +V
Sbjct: 356 PGSVVEGEVKNKTEFGLFLGLDGDVDGMV---HLSDLDWKRPGEQVIEEFKKGDHVRAQV 412

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFY- 606
           L V  + +RI++  K+            +AEA D     +IT   +T +++ G  V+   
Sbjct: 413 LDVDVEKERISLGIKQLEG-------DPFAEAGDVRKGAVITCE-VTDVKEGGIDVKIVG 464

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
             +  F  RSEL  D   +    + VGQ V  R+      S ++ +S         ++ +
Sbjct: 465 TDLAAFIKRSELARDRSEQRPDRFAVGQKVDARVTQFDRKSHKVQVSIKALEVAEEKEAI 524

Query: 667 VKLGSLVSG 675
            + GS  SG
Sbjct: 525 AQYGSSDSG 533


>gi|449104708|ref|ZP_21741446.1| ribosomal protein S1 [Treponema denticola AL-2]
 gi|448962844|gb|EMB43530.1| ribosomal protein S1 [Treponema denticola AL-2]
          Length = 811

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 144/357 (40%), Gaps = 41/357 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV- 553
           + K G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V 
Sbjct: 439 NTKIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVI 497

Query: 554 -LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            L  ++KRI ++ K       L     +    D ++T G +TK    G F+    G++G 
Sbjct: 498 RLDPENKRINLSLKHFTQDPWLQFEEKFH--VDDIVT-GTVTKTTDFGAFIELDEGIEGL 554

Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
           A  SE   +    +P  +   G  V C I+     + R++L        P    E+    
Sbjct: 555 AHISEFSWVKKINKPEDILKPGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTIEERYPV 614

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYEFD 725
              L   VV +    A              I  E   D   HA   + +K V  PG E +
Sbjct: 615 GTRLTRKVVKITNAGAF-------------ISLEEGIDGFLHADDISWIKRVKHPGSELE 661

Query: 726 -----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
                +++V+  D ES  + L  K    +  ++     +     S+V G V +I + G F
Sbjct: 662 VDQEIEVIVIECDAESRRIRLGIKQLTDDPWEKF---GAAYKVGSIVEGEVSSITDFGVF 718

Query: 779 VRFLGRLTGFAPRSKAVDGQ----RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+  G + G   +   V+ +       L+K Y VG  +++ ++++N    +   S+K
Sbjct: 719 VKVPGDIEGLIHKQNLVESRDETPEEALAK-YAVGDKIKAVVIEINPRNKKTAFSIK 774



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 115/554 (20%), Positives = 209/554 (37%), Gaps = 109/554 (19%)

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           + +E  + G ++A   E  +      + G + +G V+AV++    V   G  +   PL  
Sbjct: 245 KDVEKDSNGNIQAQLQEEYLNNFEAPEAGTIKEGYVVAVNNGTVFVDVGGKSEGHIPLDE 304

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLIT 589
             E    +P    KV  ++   +   +S    ++  K L   +L +   + +A  D+   
Sbjct: 305 FDE----EP----KVNDKVNVLIEKTESSNGHLSVSK-LKADRLILQKEFKQAYADKTPI 355

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQV-VKCRIMS 642
            G I K  + G  V+   G+  F P S+  +    +P ++      +++ ++    R   
Sbjct: 356 DGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLVGVKSKFYIEKLSFNSRSGE 415

Query: 643 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           +I  +RR  +    +  R +     K+G  V G V   T     + +   G   G +   
Sbjct: 416 NIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTVKSFTSFGAFIDL---GGFDGLL--- 469

Query: 703 HLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           H+ D    H T  K  +K G E + +++ LD E+  + LS K+   +   Q        H
Sbjct: 470 HINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKRINLSLKHFTQDPWLQF---EEKFH 526

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSN 815
            + +V G V    + G F+     + G A  S     K ++ +  D+ K    G  V   
Sbjct: 527 VDDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKIN-KPEDILKP---GDKVTCM 582

Query: 816 ILDVNSETGRITLSLKQSCCSSTD----------------------ASFMQ-----EHFL 848
           IL  + + GR++L LKQ   +  D                       +F+      + FL
Sbjct: 583 ILGYDIQAGRVSLGLKQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFL 642

Query: 849 LEEKIAMLQSSKHNGSEL---------------------------------KWVEGFIIG 875
             + I+ ++  KH GSEL                                 K+   + +G
Sbjct: 643 HADDISWIKRVKHPGSELEVDQEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVG 702

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAIL 925
           S++EG+V    DFGV V      D+ G I    L  +  E+          G  I+A ++
Sbjct: 703 SIVEGEVSSITDFGVFVKV--PGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVI 760

Query: 926 DVAKAERLVDLSLK 939
           ++    +    S+K
Sbjct: 761 EINPRNKKTAFSIK 774



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P +K
Sbjct: 446  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENK 504

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK        Q E       HV DIV G + +   +G FI ++
Sbjct: 505  RINLSLKHFTQDPWLQFE----EKFHVDDIVTGTVTKTTDFGAFIELD 548


>gi|409386587|ref|ZP_11238969.1| SSU ribosomal protein S1p [Lactococcus raffinolactis 4877]
 gi|399206193|emb|CCK19884.1| SSU ribosomal protein S1p [Lactococcus raffinolactis 4877]
          Length = 413

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 41/255 (16%)

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLIN--SAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
           G EFD  ++  N +    + ++ ++I   S  Q     +++H   +V G V    + G F
Sbjct: 152 GEEFDAKIIEVNAAEKRFILSRRAVIEEESKSQRAEAFANLHEGDIVEGTVARTTDFGAF 211

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    ++   G+    S    VG++V+  +L V+ E GR++LSLK +     
Sbjct: 212 IN-LGGVDGLVHVTELAHGRVKKPSDVVKVGETVQVKVLKVDEEAGRVSLSLKATQPGPW 270

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         ++EK                     +GSV++G V    DFG  V  E   
Sbjct: 271 DD--------IDEKAP-------------------VGSVLDGTVKRITDFGAFV--EIFP 301

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK--TVFIDRFREA 949
            V G +   Q++   VE+       G  +Q  +LDV  AE  + LS+K  T    R   +
Sbjct: 302 GVEGLVHISQISWERVENAKDVLSVGQAVQVKVLDVKPAEERISLSIKALTEAPARKERS 361

Query: 950 NSNRQAQKKKRKREA 964
           N +  A +  ++R+A
Sbjct: 362 NDSGNAAQGGQRRDA 376



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 18/168 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++  G +V+G V     FGA +   GGV  L  +  ++   + KP    KVG  +  +V
Sbjct: 190 ANLHEGDIVEGTVARTTDFGAFINL-GGVDGLVHVTELAHGRVKKPSDVVKVGETVQVKV 248

Query: 554 LGV--KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
           L V  ++ R++++ K T       +  K  + S         +  G + +I   G FV  
Sbjct: 249 LKVDEEAGRVSLSLKATQPGPWDDIDEKAPVGS---------VLDGTVKRITDFGAFVEI 299

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           + GV+G    S++  +       +  VGQ V+ +++   PA  RI+LS
Sbjct: 300 FPGVEGLVHISQISWERVENAKDVLSVGQAVQVKVLDVKPAEERISLS 347



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
            ++  +  E   +L    IV+G V   T  G FI L   +D  V ++ L+ G V+ P    
Sbjct: 180  ESKSQRAEAFANLHEGDIVEGTVARTTDFGAFINLG-GVDGLVHVTELAHGRVKKPSDVV 238

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
             +G+ V  +VL V+  + RV ++LK +  +     +I+  +   VG ++ G +KR+  +G
Sbjct: 239  KVGETVQVKVLKVDEEAGRVSLSLKAT--QPGPWDDIDEKA--PVGSVLDGTVKRITDFG 294

Query: 1484 LFITI 1488
             F+ I
Sbjct: 295  AFVEI 299



 Score = 48.1 bits (113), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 36/214 (16%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +HEGDIV G +++      G  + +G  + G VH TEL +  V  P      G+      
Sbjct: 192  LHEGDIVEGTVARTTDF--GAFINLG-GVDGLVHVTELAHGRVKKPSDVVKVGET----- 243

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
                  V+ KVL++         V LSL+++                  PG   + I++ 
Sbjct: 244  ------VQVKVLKVDEEAG---RVSLSLKAT-----------------QPGP-WDDIDEK 276

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P   ++ G VK +T  G F+ +   ++  V +S +S   VE+ +    +G+ V  +VL 
Sbjct: 277  APVGSVLDGTVKRITDFGAFVEIFPGVEGLVHISQISWERVENAKDVLSVGQAVQVKVLD 336

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1469
            V+P  +R+ +++K      A +   N+  N   G
Sbjct: 337  VKPAEERISLSIKALTEAPARKERSNDSGNAAQG 370



 Score = 44.3 bits (103), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 115/277 (41%), Gaps = 30/277 (10%)

Query: 569 LVKSKLAILSSYA--EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           L + +LA   ++A  E  +  +    + K  K G  V F NGV+GF P S +  D     
Sbjct: 89  LSEKRLAARKAFADLEGKEGEVVTVKVLKDVKGGLSVDF-NGVRGFIPASMI--DTYFVR 145

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMM------KPTRVSEDDLVKLGSLVSGVVDVV 680
            +   VG+    +I+    A +R  LS         K  R      +  G +V G V   
Sbjct: 146 DTKKFVGEEFDAKIIEVNAAEKRFILSRRAVIEEESKSQRAEAFANLHEGDIVEGTVART 205

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD-QLLVLDNESSNL 737
           T     + +   G   G +    LA    H  V K   V+K G     ++L +D E+  +
Sbjct: 206 TDFGAFINL---GGVDGLVHVTELA----HGRVKKPSDVVKVGETVQVKVLKVDEEAGRV 258

Query: 738 LLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
            LS K     + Q  P  D     P  SV+ G V  I + G FV     + G    S+ +
Sbjct: 259 SLSLK-----ATQPGPWDDIDEKAPVGSVLDGTVKRITDFGAFVEIFPGVEGLVHISQ-I 312

Query: 796 DGQRADLSK-TYYVGQSVRSNILDVNSETGRITLSLK 831
             +R + +K    VGQ+V+  +LDV     RI+LS+K
Sbjct: 313 SWERVENAKDVLSVGQAVQVKVLDVKPAEERISLSIK 349


>gi|160892582|ref|ZP_02073372.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50]
 gi|156865623|gb|EDO59054.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
           L2-50]
          Length = 650

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 18/251 (7%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSC 462
           GDI     V  V+ GL +L +   T +  PA + +SD+ E+ + K     +E +  E + 
Sbjct: 392 GDILTGKVVQVVNGGLNVLYE--ETRIFIPASL-VSDLYEKNLDKYLDQDIEFQLTEFNP 448

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
            + RI+G R    +     KA+A + L      ++ GM V+G V  V  FGA +   GG 
Sbjct: 449 KKRRIIGNRKKLIVER---KAAAAKEL---FEKIEVGMTVEGTVKNVTDFGAFIDL-GGA 501

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 582
             L  +  MS   +  P K FKVG  +   +  +   +I ++ K       L     YA 
Sbjct: 502 DGLLHISEMSWGRVESPKKMFKVGDTVKAFIKDINGDKIALSLKFDETNPWLNAEEKYAV 561

Query: 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
            T   +  G I ++   G FV    GV      S++  D   +P  +Y +G  ++ +++ 
Sbjct: 562 GT---VVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVD 618

Query: 643 SIPASRRINLS 653
             P  ++I+LS
Sbjct: 619 FKPEEKKISLS 629



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E  E +   M V+G VKNVT  G FI L    D  + +S +S G VESP+K F +G  V 
Sbjct: 471  ELFEKIEVGMTVEGTVKNVTDFGAFIDLG-GADGLLHISEMSWGRVESPKKMFKVGDTVK 529

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              +  +     ++ ++LK  ++     +E        VG +V G+I R+  +G F+ +E
Sbjct: 530  AFIKDIN--GDKIALSLKFDETNPWLNAE----EKYAVGTVVTGKIARMTDFGAFVELE 582



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G VV GK+  +  FGA V+   GV AL  +  +S   + KP   +K+G E+  +V+  K 
Sbjct: 562 GTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVDFKP 621

Query: 558 -SKRITVTHKKTL 569
             K+I+++ K  L
Sbjct: 622 EEKKISLSVKALL 634



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 1359 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1418
            LS   D     L   E  +   +V G +  +T  G F+ L   +DA + +S +S  +V  
Sbjct: 542  LSLKFDETNPWLNAEEKYAVGTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAK 601

Query: 1419 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
            PE  + IG  +  +V+  +P  K++ +++K
Sbjct: 602  PEDVYKIGDEIEAKVVDFKPEEKKISLSVK 631


>gi|241730208|ref|XP_002413818.1| programmed cell death protein, putative [Ixodes scapularis]
 gi|215507634|gb|EEC17126.1| programmed cell death protein, putative [Ixodes scapularis]
          Length = 835

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 57/401 (14%)

Query: 1070 EITE-IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
            EI E ++  +L++    G  GR+HIT + + +    EN    F+ G  +   I+ K+   
Sbjct: 125  EIVESVEKFQLKVSLKGGSRGRVHITMIKE-QPKEGENPMQGFQQGDKLRLHILGKTA-- 181

Query: 1129 DMKKSFLWELSIKPSMLTVSEIGSKLLFEE---CDVSIGQRVTGYVYKVDNEWALLTISR 1185
             ++   +  ++ + ++   S      LF     C+V  G  VTG+          L +S 
Sbjct: 182  -VQHKRMLAITGRKNLTECS------LFPHRGGCEVRPGNTVTGFFSHFSEGSLFLVLST 234

Query: 1186 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1245
               A+L IL+      +L    + + IG+AV   VL ++K                   T
Sbjct: 235  DKMAKLPILNMNLPAEDLPYVHKLYKIGQAVRAKVLRVDK------------------NT 276

Query: 1246 VDISNDNMQTFIHEGDIVGGRISKILSGVGG-LVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            V++S  +  T +  G  V   +  + + +G  L + +G    G +  T+     VSD  S
Sbjct: 277  VELSQLDTDT-LEPGSKVNACVVSVRTTLGAYLCLPLGHR--GVMGLTD-----VSDDFS 328

Query: 1305 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1364
                     +  + + ++V+C++L       G F V  S+R S   M+   S+ +  +VD
Sbjct: 329  KTTA----LMESHLQARYVRCRILTQDEET-GQFRV--SMRESRLNMARA-SAVVDIEVD 380

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1424
                      DLS +  ++G+VK+V   GCF+ +   +D  V LS L  G ++   K   
Sbjct: 381  D-------FNDLSVDTSLRGFVKSVNKFGCFVNVGYNIDGLVPLSKLP-GAIQRNRKMLK 432

Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1465
            IG LV+  V  ++   K++ +TL  S+ ++ +      LS+
Sbjct: 433  IGSLVSVVVKHIQAAEKKLLLTLSNSEIQSPTAPRKRRLSS 473



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 123/303 (40%), Gaps = 25/303 (8%)

Query: 506 VIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLG---VKSKR 560
           V +V+ F   V   GG +    +  + E   E   P + F+ G +L   +LG   V+ KR
Sbjct: 127 VESVEKFQLKVSLKGGSRGRVHITMIKEQPKEGENPMQGFQQGDKLRLHILGKTAVQHKR 186

Query: 561 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            + +T +K L +  L       E        G+ +   +   F+          P   + 
Sbjct: 187 MLAITGRKNLTECSLFPHRGGCEVRPGNTVTGFFSHFSEGSLFLVLSTDKMAKLPILNMN 246

Query: 620 LDPGCEP--SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
           L     P    +Y +GQ V+ +++     +  + LS +       + D ++ GS V+  V
Sbjct: 247 LPAEDLPYVHKLYKIGQAVRAKVLRVDKNT--VELSQL-------DTDTLEPGSKVNACV 297

Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLDNESSN 736
             V         +  G+ +G +    ++D     T +M+S ++  Y   ++L  D E+  
Sbjct: 298 VSVRTTLGAYLCLPLGH-RGVMGLTDVSDDFSKTTALMESHLQARYVRCRILTQDEETGQ 356

Query: 737 LLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
             +S + S +N A+          D + +  ++ + G+V ++ + GCFV     + G  P
Sbjct: 357 FRVSMRESRLNMARASAVVDIEVDDFNDLSVDTSLRGFVKSVNKFGCFVNVGYNIDGLVP 416

Query: 791 RSK 793
            SK
Sbjct: 417 LSK 419


>gi|256826974|ref|YP_003150933.1| 30S ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
 gi|256583117|gb|ACU94251.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
          Length = 403

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL V  
Sbjct: 207 GMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDL 265

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +RI++  K+T     + ++ SY   +   I  G +TK    G FV     V+G    S
Sbjct: 266 QRERISLGLKQTTEDPWVKLVESYPVGS---IIDGKVTKTVPFGAFVELGPNVEGLVHIS 322

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           E+       P+ + H G  VK ++M      RRI+LS 
Sbjct: 323 EMANKHIEAPTQVVHAGDEVKVKVMEINTERRRISLSM 360



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 153/370 (41%), Gaps = 52/370 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE+    V      +G  P  EL +    +PS + ++G  ++  ++      
Sbjct: 36  LVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEALVLQKEDKD 95

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +   +S ++  K G +VSG V  V    +++ +  +G+   ++     
Sbjct: 96  GRLILSKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 705 ADHLEH--ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
              L+    T +++         +++ +D   +N++LS +  L    +   ++  S +  
Sbjct: 156 VKDLDMYLGTPLEA---------RVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSRLTK 206

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDL 265

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
           +  RI+L LKQ+                                +K VE + +GS+I+GK
Sbjct: 266 QRERISLGLKQTTEDPW---------------------------VKLVESYPVGSIIDGK 298

Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLV 934
           V ++  FG  V      +V G +   ++A   +E       +G  ++  ++++    R +
Sbjct: 299 VTKTVPFGAFVEL--GPNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEINTERRRI 356

Query: 935 DLSLKTVFID 944
            LS+K    D
Sbjct: 357 SLSMKAAAED 366



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 145/352 (41%), Gaps = 23/352 (6%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T ++   G +V G V+ ++    +V      + + P   +S  +   P     +G  +  
Sbjct: 27  TLTEFDEGDLVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEA 86

Query: 552 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
            VL  + K   +   K   + + A +S   +     I  G + ++ K G  +    G++G
Sbjct: 87  LVLQKEDKDGRLILSKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKGGLILDI--GLRG 144

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDD 665
           F P S + L    +   MY +G  ++ R++      +++  SRR+ L    K  R     
Sbjct: 145 FLPASLVDLRR-VKDLDMY-LGTPLEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILS 202

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 724
            +  G  + G V  +      V +   G   G +    L+  H+ H +    V+K G E 
Sbjct: 203 RLTKGMRLKGTVSSIVDFGAFVDL---GGIDGLVHISELSWSHVNHPS---EVVKVGDEV 256

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFL 782
           + Q+L +D +   + L  K +  +   +L       +P  S++ G V   +  G FV   
Sbjct: 257 EVQVLDVDLQRERISLGLKQTTEDPWVKLVES----YPVGSIIDGKVTKTVPFGAFVELG 312

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             + G    S+  +      ++  + G  V+  ++++N+E  RI+LS+K + 
Sbjct: 313 PNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEINTERRRISLSMKAAA 364


>gi|449105258|ref|ZP_21741963.1| ribosomal protein S1 [Treponema denticola ASLM]
 gi|451969564|ref|ZP_21922793.1| ribosomal protein S1 [Treponema denticola US-Trep]
 gi|448967245|gb|EMB47886.1| ribosomal protein S1 [Treponema denticola ASLM]
 gi|451701661|gb|EMD56122.1| ribosomal protein S1 [Treponema denticola US-Trep]
          Length = 811

 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 144/357 (40%), Gaps = 41/357 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV- 553
           + K G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V 
Sbjct: 439 NTKIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVI 497

Query: 554 -LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            L  ++KRI ++ K       L     +    D ++T G +TK    G F+    G++G 
Sbjct: 498 RLDPENKRINLSLKHFTQDPWLQFEEKFH--VDDIVT-GTVTKTTDFGAFIELDEGIEGL 554

Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
           A  SE   +    +P  +   G  V C I+     + R++L        P    E+    
Sbjct: 555 AHISEFSWVKKINKPEDILKPGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTIEERYPV 614

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYEFD 725
              L   VV +    A              I  E   D   HA   + +K V  PG E +
Sbjct: 615 GTRLTRKVVKITNAGAF-------------ISLEEGIDGFLHADDISWIKRVKHPGSELE 661

Query: 726 -----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
                +++V+  D ES  + L  K    +  ++     +     S+V G V +I + G F
Sbjct: 662 VGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKF---GAAYKVGSIVEGEVSSITDFGVF 718

Query: 779 VRFLGRLTGFAPRSKAVDGQ----RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+  G + G   +   V+ +       L+K Y VG  +++ ++++N    +   S+K
Sbjct: 719 VKVPGDIEGLIHKQNLVESRDETPEEALAK-YAVGDKIKAVVIEINPRNKKTAFSIK 774



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 115/554 (20%), Positives = 209/554 (37%), Gaps = 109/554 (19%)

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           + +E  + G ++A   E  +      + G + +G V+AV++    V   G  +   PL  
Sbjct: 245 KDVEKDSNGNIQAQLQEEYLNNFEAPEAGTIKEGYVVAVNNGTVFVDVGGKSEGHIPLDE 304

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLIT 589
             E    +P    KV  ++   +   +S    ++  K L   +L +   + +A  D+   
Sbjct: 305 FDE----EP----KVNDKVNVLIEKTESSNGHLSVSK-LKADRLILQKEFKQAYADKTPI 355

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQV-VKCRIMS 642
            G I K  + G  V+   G+  F P S+  +    +P ++      +++ ++    R   
Sbjct: 356 DGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLVGVKSKFYIEKLSFNSRSGE 415

Query: 643 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           +I  +RR  +    +  R +     K+G  V G V   T     + +   G   G +   
Sbjct: 416 NIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTVKSFTSFGAFIDL---GGFDGLL--- 469

Query: 703 HLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           H+ D    H T  K  +K G E + +++ LD E+  + LS K+   +   Q        H
Sbjct: 470 HINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKRINLSLKHFTQDPWLQF---EEKFH 526

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSN 815
            + +V G V    + G F+     + G A  S     K ++ +  D+ K    G  V   
Sbjct: 527 VDDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKIN-KPEDILKP---GDKVTCM 582

Query: 816 ILDVNSETGRITLSLKQSCCSSTD----------------------ASFMQ-----EHFL 848
           IL  + + GR++L LKQ   +  D                       +F+      + FL
Sbjct: 583 ILGYDIQAGRVSLGLKQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFL 642

Query: 849 LEEKIAMLQSSKHNGSEL---------------------------------KWVEGFIIG 875
             + I+ ++  KH GSEL                                 K+   + +G
Sbjct: 643 HADDISWIKRVKHPGSELEVGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVG 702

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAIL 925
           S++EG+V    DFGV V      D+ G I    L  +  E+          G  I+A ++
Sbjct: 703 SIVEGEVSSITDFGVFVKV--PGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVI 760

Query: 926 DVAKAERLVDLSLK 939
           ++    +    S+K
Sbjct: 761 EINPRNKKTAFSIK 774



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P +K
Sbjct: 446  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENK 504

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK        Q E       HV DIV G + +   +G FI ++
Sbjct: 505  RINLSLKHFTQDPWLQFE----EKFHVDDIVTGTVTKTTDFGAFIELD 548


>gi|320108571|ref|YP_004184161.1| 30S ribosomal protein S1 [Terriglobus saanensis SP1PR4]
 gi|319927092|gb|ADV84167.1| ribosomal protein S1 [Terriglobus saanensis SP1PR4]
          Length = 636

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 189/463 (40%), Gaps = 66/463 (14%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKSKR--ITVTHKKTLVKS---- 572
           GVKA  P   +     V+P +     +G +L  RV+ +  KR  + ++ K+ L +     
Sbjct: 196 GVKAFLPGSQVE----VRPVRNLDSYIGQQLDVRVIKLNKKRGNVVISRKEILEEEQNSR 251

Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
           K   L +  E +   I  G +  +  +G FV    G+ G    +++       P  +  V
Sbjct: 252 KDVTLQTLEEGS---IMTGVVKNLTDYGAFVDL-GGLDGLLHITDMSWGRLTHPRDLVQV 307

Query: 633 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--LGSLVSGVVDVVTPNAVVVYVI 690
           G  ++ +++      +R++L F         D + +  +G+ V G +  VT     V  +
Sbjct: 308 GDEIQVKVLKFDKEKQRVSLGFKQLTPDPWLDAIERYPIGAQVKGRILSVTDYGAFVE-L 366

Query: 691 AKGYSKGTIPTEHL--ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLIN 747
            +G  +G +    +  +  ++H + M   +KPG E D +++  N +   + L  K    N
Sbjct: 367 EQGI-EGLVHVSEMTWSKRMKHPSKM---VKPGDEADTIILAVNPTDRRISLGMKQLQDN 422

Query: 748 SAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKT 805
             +QL     + +P   +V G V N+ + G F+     + G    S     +R    S+ 
Sbjct: 423 PWEQL----ENKYPIGEIVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEV 478

Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
              G+ VR+ +L V  E  R++L +KQ      D  F Q                     
Sbjct: 479 LKKGEKVRAVVLGVEPENRRLSLGVKQLEPDVWDTFFAQHR------------------- 519

Query: 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH-----HQLAGATVESGSVI 920
                   +G V++GKV  S  FG  V   E  +    ++      HQ    T+E G  +
Sbjct: 520 --------VGDVVKGKVLRSAQFGTFVEIAEGVEGLCHVSEAVNELHQ--PVTLEPGQEM 569

Query: 921 QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKRE 963
           +  I+ +++ E+ V LSL+ +  +  R    + +A  K  KRE
Sbjct: 570 EFKIVKMSQEEKKVGLSLRGIGEEASRAEVESYKAPSKDGKRE 612



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 150/351 (42%), Gaps = 47/351 (13%)

Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGL 278
           K ++L+T++EG ++T  VK++ D+G  +  G     G L   +++          V+ G 
Sbjct: 252 KDVTLQTLEEGSIMTGVVKNLTDYGAFVDLG--GLDGLLHITDMSWGRLTHPRDLVQVGD 309

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
            +Q  V   D+ ++ V L        K +T D    +I+    G  V  R+ S+ + G  
Sbjct: 310 EIQVKVLKFDKEKQRVSLG------FKQLTPDPWLDAIERYPIGAQVKGRILSVTDYGAF 363

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  +    +         + +  IL V+PT R + L +     NP
Sbjct: 364 VELEQGIEGLVHVSEMTWSKRMKHPSKMVKPGDEADTIILAVNPTDRRISLGMKQLQDNP 423

Query: 394 Y-LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
           +  L N+ P   +   +V ++ D    + ++ G+  L+ + +   +            + 
Sbjct: 424 WEQLENKYPIGEIVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWT------------KR 471

Query: 450 VRKLEKKYKEGSCVRVRILGF----RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK 505
           ++   +  K+G  VR  +LG     R L  L    L+   ++     H   + G VVKGK
Sbjct: 472 IKHPSEVLKKGEKVRAVVLGVEPENRRL-SLGVKQLEPDVWDTFFAQH---RVGDVVKGK 527

Query: 506 VIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVL 554
           V+    FG  V+   GV+ LC   H+SE   E+ +P    + G E+ F+++
Sbjct: 528 VLRSAQFGTFVEIAEGVEGLC---HVSEAVNELHQP-VTLEPGQEMEFKIV 574



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 6/120 (5%)

Query: 1371 EKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKL 1428
            E++E+  P   IV+G V+N+T  G FI +   +D  V +SNLS    ++ P +    G+ 
Sbjct: 425  EQLENKYPIGEIVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKKGEK 484

Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V   VL VEP ++R+ + +K  +            +   VGD+V G++ R   +G F+ I
Sbjct: 485  VRAVVLGVEPENRRLSLGVKQLEPDVWD----TFFAQHRVGDVVKGKVLRSAQFGTFVEI 540



 Score = 47.0 bits (110), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1423
            TP   L+ IE       V+G + +VT  G F+ L + ++  V +S ++    ++ P K  
Sbjct: 333  TPDPWLDAIERYPIGAQVKGRILSVTDYGAFVELEQGIEGLVHVSEMTWSKRMKHPSKMV 392

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
              G      +L+V P  +R+ + +K        Q E    +   +G+IV G+++ +  +G
Sbjct: 393  KPGDEADTIILAVNPTDRRISLGMKQLQDNPWEQLE----NKYPIGEIVEGRVRNLTDFG 448

Query: 1484 LFITIEN 1490
             FI IE+
Sbjct: 449  AFIEIED 455



 Score = 40.8 bits (94), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L    I+ G VKN+T  G F+ L   LD  + ++++S G +  P     +G  +  +
Sbjct: 256  LQTLEEGSIMTGVVKNLTDYGAFVDLG-GLDGLLHITDMSWGRLTHPRDLVQVGDEIQVK 314

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            VL  +   +RV +  K    +      ++ +    +G  V G+I  V  YG F+ +E 
Sbjct: 315  VLKFDKEKQRVSLGFK----QLTPDPWLDAIERYPIGAQVKGRILSVTDYGAFVELEQ 368


>gi|259046867|ref|ZP_05737268.1| 30S ribosomal protein S1 [Granulicatella adiacens ATCC 49175]
 gi|259036490|gb|EEW37745.1| 30S ribosomal protein S1 [Granulicatella adiacens ATCC 49175]
          Length = 397

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VV GKV  + +FGA +   GGV  L  +  +S   + K   K +VG E+  +V+ 
Sbjct: 193 IQEGSVVTGKVARLTNFGAFIDL-GGVDGLVHISQISHEHVAKASDKLEVGQEVQAKVIS 251

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  +S R++++ K TL      I    A  +   +  G + ++   G FV  + GV+G  
Sbjct: 252 VDPESGRVSLSIKDTLAGPWDNIEERAAVGS---VLDGLVKRLTTFGAFVELFPGVEGLV 308

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       P  +   GQ V+ +++   P  +RI+LS 
Sbjct: 309 HISQIAHQHIATPHEVLKEGQEVQVKVLEVHPEQQRISLSI 349



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 139/345 (40%), Gaps = 58/345 (16%)

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-----EDDLVK 668
           P +EL   P      +  VG VV   ++  I    + N SF++   RV      E+   K
Sbjct: 49  PFNELSTSPVERVEDVLSVGDVVDLVVIKQI--KDKENGSFLLSKKRVDARKVWEEIQAK 106

Query: 669 LGS---LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
             +   + + VVD V    +VV    + +   ++ ++H  D+L            G    
Sbjct: 107 FDNKKIIEAPVVDAVK-GGLVVDAGVRAFVPASMVSDHYVDNLAQFK--------GQTLA 157

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLG 783
             +V    S N L+ ++ +L+ + +     A    I   SVV G V  +   G F+  LG
Sbjct: 158 FEIVEIEPSENRLILSRKNLVAAEKAAKRAAVFESIQEGSVVTGKVARLTNFGAFID-LG 216

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            + G    S+      A  S    VGQ V++ ++ V+ E+GR++LS+K +     D    
Sbjct: 217 GVDGLVHISQISHEHVAKASDKLEVGQEVQAKVISVDPESGRVSLSIKDTLAGPWDN--- 273

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
                +EE+ A                   +GSV++G V     FG  V  E    V G 
Sbjct: 274 -----IEERAA-------------------VGSVLDGLVKRLTTFGAFV--ELFPGVEGL 307

Query: 904 -----ITHHQLAG--ATVESGSVIQAAILDVAKAERLVDLSLKTV 941
                I H  +A     ++ G  +Q  +L+V   ++ + LS+K +
Sbjct: 308 VHISQIAHQHIATPHEVLKEGQEVQVKVLEVHPEQQRISLSIKAL 352



 Score = 47.4 bits (111), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
            E +    +V G V  +T+ G FI L   +D  V +S +S  +V     +  +G+ V  +V
Sbjct: 191  ESIQEGSVVTGKVARLTNFGAFIDLG-GVDGLVHISQISHEHVAKASDKLEVGQEVQAKV 249

Query: 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +SV+P S RV +++K  D+       I   +   VG ++ G +KR+ ++G F+ +
Sbjct: 250  ISVDPESGRVSLSIK--DTLAGPWDNIEERAA--VGSVLDGLVKRLTTFGAFVEL 300


>gi|315222942|ref|ZP_07864821.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
 gi|315187892|gb|EFU21628.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
          Length = 399

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 158/368 (42%), Gaps = 45/368 (12%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG----GVKALCPLPHMSEFEI---VK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G    GV  L  L +  E +I   VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDANQANVAIAGTGVEGVLTLRELTNDREADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  G++GF P S L  D     ++   VGQ  + +I    P   R    F++ 
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFEAKIKEVDPKENR----FILS 171

Query: 658 PTRVSEDDLVKLGSLVSG---VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
              V E+      + V G   V D+VT        +A+  S G        D L H T +
Sbjct: 172 RREVVEEKAAAARAEVFGKLAVGDIVTGK------VARITSFGAFIDLGGVDGLVHLTEL 225

Query: 715 --------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNS 763
                   KSV+  G E + ++L L+ E   + LS K +        P D     +    
Sbjct: 226 SHERNVSPKSVVSVGDEIEVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGD 280

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           V+ G V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN++ 
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADA 340

Query: 824 GRITLSLK 831
            R++LS+K
Sbjct: 341 ERVSLSIK 348



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 19/176 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR-VSEDD 665
           G    S++       P  +  VGQ V  +++     + R++LS      R V EDD
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERPVQEDD 359



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 41/220 (18%)

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           +V G V  I   G F+  LG + G    ++    +         VG  +   +LD+N E 
Sbjct: 196 IVTGKVARITSFGAFID-LGGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNEEE 254

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
           GR++LSLK +     D         +E+K+A                    G VIEG V 
Sbjct: 255 GRVSLSLKATTPGPWDG--------VEQKLAA-------------------GDVIEGTVK 287

Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVD 935
              DFG  V  E    + G +   Q++   VE+       G  +   +LDV A AER V 
Sbjct: 288 RLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAER-VS 344

Query: 936 LSLKTVFIDRFREANS--NRQAQKKKRKREASKDLGVHQT 973
           LS+K +     +E +    RQ++ +++KR+  +D  + +T
Sbjct: 345 LSIKALEERPVQEDDQKEKRQSRPRRQKRQEKRDFELPET 384



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 34/200 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GDEIEVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQSE 1459
            ++RV +++K  + R   + +
Sbjct: 340  AERVSLSIKALEERPVQEDD 359



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V L+ LS     SP+    +G  +  +VL 
Sbjct: 191  LAVGDIVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLD 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 250  LNEEEGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|387782629|ref|YP_005793342.1| 30S ribosomal protein S1 [Helicobacter pylori 51]
 gi|261838388|gb|ACX98154.1| 30S ribosomal protein S1 [Helicobacter pylori 51]
          Length = 552

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 161/400 (40%), Gaps = 62/400 (15%)

Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           K +R +V++KK + + K+ A +    E  +  I  G I    K G  V    GV+ F  R
Sbjct: 86  KGERPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
           S   L      +   H+G+ +K  I+     +  IN+S    F +   R  E   +L++ 
Sbjct: 145 SHSSL-----KNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLET 199

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
              V GVV  +TP  + V V      KG     H ++      V  +   K G E + + 
Sbjct: 200 TEPVLGVVRQITPFGIFVEV------KGVEGLVHYSEISHKGPVNPEKYYKEGDEVYIKA 253

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  D E   L LS K ++ +  +++      + P   +   V NI   G FV     + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIENYGAFVDIGNDIEG 310

Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           F   S+ + D   +  SK   VGQ +   I+D++ +  R+ +SLKQ      D       
Sbjct: 311 FLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVF----- 365

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                       SKH            +G V+EGKV    DFG  ++      V G + +
Sbjct: 366 -----------ESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 400

Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H       +      + G VI+  IL + K ++ + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 440



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 126/288 (43%), Gaps = 61/288 (21%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            HIGK +   ++ ++KE   + +  + F +    + +++S + ++T               
Sbjct: 155  HIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLET--------------- 199

Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
               V G+V QI P         + G VH++E+ +           +G  +P   Y EG  
Sbjct: 200  TEPVLGVVRQITPFGIFVEVKGVEGLVHYSEISH-----------KGPVNPEKYYKEGDE 248

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1381
            V  K +      R    + LS++++               ++ P    E+I+D L P   
Sbjct: 249  VYIKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 287

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++  V N+ + G F+ +   ++  + +S +S D  V  P K   +G+ +  +++ ++P +
Sbjct: 288  IKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKN 347

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ V+LK   +R     E    S   VGD++ G++  +  +G F+ +
Sbjct: 348  RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNL 391



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 130/300 (43%), Gaps = 15/300 (5%)

Query: 361 TNWKNDYNQ-HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRV 419
           ++ KND N   K++ A I+ VD  + ++ ++   +   N      V    +     V+ V
Sbjct: 147 SSLKNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLETTEPVLGV 206

Query: 420 DRGL---GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
            R +   G+ +++          V  S+++ +     EK YKEG  V ++ + +   +  
Sbjct: 207 VRQITPFGIFVEVKGVE----GLVHYSEISHKGPVNPEKYYKEGDEVYIKAIAYDEEKRR 262

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFE 535
            +  +KA+  +        +KPG  +K  V  ++++GA V     ++    +  +S +  
Sbjct: 263 LSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDKN 322

Query: 536 IVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
           +  P K   VG E+  +++ +  K++R+ V+ K+ L      +  S  +  D L   G +
Sbjct: 323 VSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LTNRPFDVFESKHQVGDVL--EGKV 379

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
             +   G F+    GV G     +   D   +    Y +G V+K +I+      ++I+LS
Sbjct: 380 ATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLS 438


>gi|150021498|ref|YP_001306852.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149794019|gb|ABR31467.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosipho
           melanesiensis BI429]
          Length = 810

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 23/305 (7%)

Query: 551 FRVLGVKSKRI--TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           F+++  + KR    V  +K LVK ++     + E     I  G + +IE  G FVR   G
Sbjct: 417 FKIIKFEDKRKLNVVVSRKALVKEQVERF--FKERKKGDIVEGIVKRIEDFGAFVRVAEG 474

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDD 665
           ++G  P SE+  D       +   GQ VK  +    P ++++  S    M  P    E  
Sbjct: 475 IEGLLPNSEVSYDYEISAMDVLGEGQSVKLYLKEIDPTNKKLIFSLKELMPNPWNNVEKK 534

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEF 724
             K+G +VSG V  + P    V         G     H+ D        +K +I  G +F
Sbjct: 535 Y-KIGEVVSGKVKKIMPYGFFV-----NLEPGIDGFVHIDDVFWGKRGNIKDIISEG-DF 587

Query: 725 DQLLV--LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRF 781
            +L+V  +D E+  + LS K    +  + +       +P  +VV G V  + + G  +  
Sbjct: 588 VKLVVKEIDKENKKIRLSYKEVKGDPWENIEEK----YPLGNVVTGIVRVVFDKGVIIDI 643

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              ++G+ P S+      +  +     G  V++ +LD++ E  +I LS+K++  +  +  
Sbjct: 644 EEGISGYCPISEISWNYISHPTDVIGEGNKVKAVVLDLDKENRKIRLSIKRTVENPWE-K 702

Query: 842 FMQEH 846
           F Q+H
Sbjct: 703 FKQQH 707


>gi|187477852|ref|YP_785876.1| 30S ribosomal protein S1 [Bordetella avium 197N]
 gi|115422438|emb|CAJ48963.1| 30S ribosomal protein S1 [Bordetella avium 197N]
          Length = 570

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 34/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 201 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 259

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 260 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 316

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 317 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 374

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     T  ++V   K G E + +++
Sbjct: 375 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAVVL 429

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D E   + L  K        QL  D      +     +VV G +  +   G  V    
Sbjct: 430 GIDTEKERISLGIK--------QLEGDPFNNFVATYDKGAVVPGTIKQVEAKGAVVTLSV 481

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + G+   S+   G+  D +    VG +V + I++++ +   I LS+K    + T
Sbjct: 482 DVEGYLRASEISSGRVEDATTVLNVGDNVEAMIINIDRKARSIQLSIKARDNAET 536



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 39/302 (12%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V A++L  D     V L +     +P++   R  P       KV ++ D    V V+ 
Sbjct: 248 QEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEA 307

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ +  E  V ++++        R RI LG +    
Sbjct: 308 GIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDED-------RRRISLGMKQC-- 358

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + + +E      ++ K G  V+G + ++  FG  V  PGG+  L  L  +S  E
Sbjct: 359 ------RQNPWEEFA---TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTE 409

Query: 536 IVKPG-KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
             +   + FK G E+   VLG+ +  +RI++  K+         +++Y +     +  G 
Sbjct: 410 TGEEAVRNFKKGDEIEAVVLGIDTEKERISLGIKQLEGDPFNNFVATYDKGA---VVPGT 466

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           I ++E  G  V     V+G+   SE+      + +++ +VG  V+  I++    +R I L
Sbjct: 467 IKQVEAKGAVVTLSVDVEGYLRASEISSGRVEDATTVLNVGDNVEAMIINIDRKARSIQL 526

Query: 653 SF 654
           S 
Sbjct: 527 SI 528



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 83/409 (20%), Positives = 161/409 (39%), Gaps = 64/409 (15%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 162  EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 219

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ         
Sbjct: 220  LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ--------- 270

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    L      G+ L             GKV    D+G  V  E   +  
Sbjct: 271  ------LGEDPWVGLARRYPQGTRLF------------GKVTNLTDYGAFVEVEAGIEGL 312

Query: 902  GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN-RQ 954
              ++        V+       G  ++  +L++ +  R + L +K    + + E  +N ++
Sbjct: 313  VHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKR 372

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP-EYNHSIGYASVSDYNTQKFPQK 1013
              K +   ++  D GV                 + LP   +  +  + +S   T +   +
Sbjct: 373  GDKVRGAIKSITDFGVF----------------VGLPGGIDGLVHLSDLSWTETGEEAVR 416

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
             F  G  + A V+ + +     R+ L +K +     ++       ++YD G++V   I +
Sbjct: 417  NFKKGDEIEAVVLGIDTEKE--RISLGIKQLEGDPFNNF-----VATYDKGAVVPGTIKQ 469

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            ++     +   +   G +  +E++   S  VE+  +   +G  V A II
Sbjct: 470  VEAKGAVVTLSVDVEGYLRASEIS---SGRVEDATTVLNVGDNVEAMII 515



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 137/332 (41%), Gaps = 60/332 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 201  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 253

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 254  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 303

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 304  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 349

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 350  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 393

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + E+ E   + F  G  +   VL ++   +R+ + +K  +    +
Sbjct: 394  GGIDGLVHLSDLS--WTETGEEAVRNFKKGDEIEAVVLGIDTEKERISLGIKQLEGDPFN 451

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                N ++    G +V G IK+VE+ G  +T+
Sbjct: 452  ----NFVATYDKGAVVPGTIKQVEAKGAVVTL 479


>gi|329114774|ref|ZP_08243531.1| 30S ribosomal protein S1 [Acetobacter pomorum DM001]
 gi|326695905|gb|EGE47589.1| 30S ribosomal protein S1 [Acetobacter pomorum DM001]
          Length = 572

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 189/475 (39%), Gaps = 81/475 (17%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 560
           VKG    VD  GA+   PG    + P+  +S            +G    F++L +   R 
Sbjct: 128 VKGG-FTVDLGGAMAFLPGSQVDIRPVRDVSPL----------MGVPQPFQILKMDRARG 176

Query: 561 -ITVTHKKTLVKSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
            I V+ +  L +++    S   +  T+ +I  G +  I  +G FV    GV G    +++
Sbjct: 177 NIVVSRRAVLEETRAEQRSELIQGLTEGMILDGVVKNITDYGAFVDL-GGVDGLLHVTDI 235

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGV 676
                  PS    +GQ V+ +++   P ++RI+L          E+  +K   G+  +G 
Sbjct: 236 AWKRINHPSEALQIGQPVRVQVIRFNPETQRISLGMKQLEADPWENVALKYPPGARFTGR 295

Query: 677 VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG------YEFDQLLVL 730
           V  +T      +V  +   +G +       H+   +  K  + PG       E D ++VL
Sbjct: 296 VTNITDYGA--FVELEPGVEGLV-------HVSEMSWTKKNVHPGKIVATSQEVD-VMVL 345

Query: 731 DNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           D +S+   + L  K    N  +Q    A      S V G + NI E G F+     + G 
Sbjct: 346 DVDSAKRRISLGLKQVQRNPWEQF---AEEHKVGSTVEGEIRNITEFGLFIGLSADIDGM 402

Query: 789 APRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
              S  + D    +  K Y  GQ V++ +LDV+ E  RI+L +KQ               
Sbjct: 403 VHMSDLSWDEAGEEAMKHYEKGQVVKAKVLDVDVEKERISLGIKQ--------------- 447

Query: 848 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 907
           L E+  A   +S   GS +  +   +  + IE KV +               + GFI   
Sbjct: 448 LQEDPAADALASVQKGSIVTCIVTAVQTNGIEVKVDDV--------------LTGFIRRA 493

Query: 908 QLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
           +LA    E        G  + A I+ V +A R + L++K       RE   ++QA
Sbjct: 494 ELARDKAEQRPERFAVGERVDAKIISVDRAARKLALTIKG------REVEEDKQA 542



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 21/260 (8%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKP 498
           ++D+A + +    +  + G  VRV+++ F    + ++ G+  L+A  +E +   +    P
Sbjct: 232 VTDIAWKRINHPSEALQIGQPVRVQVIRFNPETQRISLGMKQLEADPWENVALKYP---P 288

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVL 554
           G    G+V  +  +GA V+   GV+ L    H+SE    K    PGK      E+   VL
Sbjct: 289 GARFTGRVTNITDYGAFVELEPGVEGLV---HVSEMSWTKKNVHPGKIVATSQEVDVMVL 345

Query: 555 GVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V S  +RI++  K+            +   +      G I  I + G F+     + G 
Sbjct: 346 DVDSAKRRISLGLKQVQRNPWEQFAEEHKVGS---TVEGEIRNITEFGLFIGLSADIDGM 402

Query: 613 APRSELGLD-PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKL 669
              S+L  D  G E    Y  GQVVK +++       RI+L         + D L  V+ 
Sbjct: 403 VHMSDLSWDEAGEEAMKHYEKGQVVKAKVLDVDVEKERISLGIKQLQEDPAADALASVQK 462

Query: 670 GSLVSGVVDVVTPNAVVVYV 689
           GS+V+ +V  V  N + V V
Sbjct: 463 GSIVTCIVTAVQTNGIEVKV 482



 Score = 47.0 bits (110), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 7/117 (5%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G ++N+T  G FI LS  +D  V +S+LS D   E   K +  G++V  +VL V+   
Sbjct: 379  VEGEIRNITEFGLFIGLSADIDGMVHMSDLSWDEAGEEAMKHYEKGQVVKAKVLDVDVEK 438

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN--TNLVR 1495
            +R+ + +K      A+ +    L+++  G IV   +  V++ G+ + +++  T  +R
Sbjct: 439  ERISLGIKQLQEDPAADA----LASVQKGSIVTCIVTAVQTNGIEVKVDDVLTGFIR 491



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 13/123 (10%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E I+ L+  MI+ G VKN+T  G F+ L   +D  + +++++   +  P +   IG+ V 
Sbjct: 196  ELIQGLTEGMILDGVVKNITDYGAFVDLG-GVDGLLHVTDIAWKRINHPSEALQIGQPVR 254

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV----GDIVIGQIKRVESYGLFI 1486
             +V+   P ++R+ + +K        Q E +   N+ +    G    G++  +  YG F+
Sbjct: 255  VQVIRFNPETQRISLGMK--------QLEADPWENVALKYPPGARFTGRVTNITDYGAFV 306

Query: 1487 TIE 1489
             +E
Sbjct: 307  ELE 309



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 133/333 (39%), Gaps = 64/333 (19%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH---- 1219
            G R TG V  + +  A + +   ++  + +       SE+   ++  H GK V       
Sbjct: 289  GARFTGRVTNITDYGAFVELEPGVEGLVHV-------SEMSWTKKNVHPGKIVATSQEVD 341

Query: 1220 --VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGV 1274
              VL ++  K+ + L L+  Q            +  + F  E   G  V G I  I    
Sbjct: 342  VMVLDVDSAKRRISLGLKQVQ-----------RNPWEQFAEEHKVGSTVEGEIRNITEF- 389

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
             GL + +   + G VH ++L           +DE   + +  Y++GQ VK KVL++    
Sbjct: 390  -GLFIGLSADIDGMVHMSDLS----------WDEAGEEAMKHYEKGQVVKAKVLDVD--- 435

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                 VE   R SL G+      D + D          +  +    IV   V  V + G 
Sbjct: 436  -----VEKE-RISL-GIKQLQ-EDPAADA---------LASVQKGSIVTCIVTAVQTNGI 478

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
             + +   L   +  + L+    E   + F +G+ V  +++SV+  ++++ +T+K  +   
Sbjct: 479  EVKVDDVLTGFIRRAELARDKAEQRPERFAVGERVDAKIISVDRAARKLALTIKGREVEE 538

Query: 1455 ASQSEINNL----SNLHVGDIVIGQIKRVESYG 1483
              Q+ IN      S   +GDI+   I+R  + G
Sbjct: 539  DKQA-INEYGSADSGASLGDILGAAIRRRNTDG 570



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 84/185 (45%), Gaps = 12/185 (6%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFR 552
           K G  V+G++  +  FG  +     +  +    HMS+    + G    K ++ G  +  +
Sbjct: 374 KVGSTVEGEIRNITEFGLFIGLSADIDGMV---HMSDLSWDEAGEEAMKHYEKGQVVKAK 430

Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL V  + +RI++  K+         L+S  + +   I    +T ++ +G  V+  + + 
Sbjct: 431 VLDVDVEKERISLGIKQLQEDPAADALASVQKGS---IVTCIVTAVQTNGIEVKVDDVLT 487

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
           GF  R+EL  D   +    + VG+ V  +I+S   A+R++ L+   +     +  + + G
Sbjct: 488 GFIRRAELARDKAEQRPERFAVGERVDAKIISVDRAARKLALTIKGREVEEDKQAINEYG 547

Query: 671 SLVSG 675
           S  SG
Sbjct: 548 SADSG 552


>gi|117923488|ref|YP_864105.1| 30S ribosomal protein S1 [Magnetococcus marinus MC-1]
 gi|117607244|gb|ABK42699.1| SSU ribosomal protein S1P [Magnetococcus marinus MC-1]
          Length = 570

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 145/342 (42%), Gaps = 23/342 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           GMV+ G V  +  +GA V   GG+  L  +  MS   +  P     VG  +  +V+   S
Sbjct: 202 GMVLDGIVKNITDYGAFVDL-GGLDGLLHITDMSWKRVKHPSAVVNVGDTVTVQVIKFNS 260

Query: 559 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +RI++  K+ L+     I + Y          G +T I  +G FV    GV+G A  S
Sbjct: 261 DTQRISLGMKQLLIDPWEGIGAKYPAGAK---FSGHVTNITDYGSFVELEPGVEGLAHVS 317

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--LGSLV 673
           EL        PS +  V Q+V+  ++      RRI+L          E       +G++V
Sbjct: 318 ELTWTKKNIHPSKILEVNQIVEVMVLDVDADRRRISLGIKQCQENPWEAFATSHPVGAMV 377

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK---PGYEFDQL-LV 729
            G +  +T     ++V  +G   G +   HL+D        + V+K    G E + + L 
Sbjct: 378 KGEIKNITEFG--LFVGLEGDIDGLV---HLSDITWDTNAGEEVLKDFQKGQEVEAMVLS 432

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
           LD +   + L  K +  ++  Q   DA+     +VV G V  ++ +G  V+    + G  
Sbjct: 433 LDPDKERISLGLKQAQPDAWGQW-VDAN--PKGNVVMGKVKEVLSSGVLVQLADEVDGHI 489

Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            +++     R   + T      V   ++ V+ +  +I+LS+K
Sbjct: 490 RKAEFSQDDREGTNLTLET--EVECRVMQVDRQKRKISLSIK 529



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 113/492 (22%), Positives = 196/492 (39%), Gaps = 74/492 (15%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           KA   E  V        G  V G+++     G  V   GG+ A  P   +     V+P  
Sbjct: 98  KAKREEAWVLLEEAFNDGKTVDGRIMGKVKGGYTVDL-GGLAAFLPGSQVD----VRPVH 152

Query: 542 KFKVGAELV--FRVLGVKSKR--ITVTHKKTLVK----SKLAILSSYAEATDRLITHGWI 593
                 E    F +L +  +R  I V+ +  + K    ++ A+L +  E    ++  G +
Sbjct: 153 DISRLQEETQPFDILKMDRRRGNIVVSRRTVIEKHRENARSALLETLHEG---MVLDGIV 209

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
             I  +G FV    G+ G    +++       PS++ +VG  V  +++     ++RI+L 
Sbjct: 210 KNITDYGAFVDL-GGLDGLLHITDMSWKRVKHPSAVVNVGDTVTVQVIKFNSDTQRISLG 268

Query: 654 FMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                    E    K   G+  SG V  +T     V +            E LA H+   
Sbjct: 269 MKQLLIDPWEGIGAKYPAGAKFSGHVTNITDYGSFVEL--------EPGVEGLA-HVSEL 319

Query: 712 TVMKSVIKPG--YEFDQL---LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSV 764
           T  K  I P    E +Q+   +VLD ++    +S     I   Q+ P +A +  HP  ++
Sbjct: 320 TWTKKNIHPSKILEVNQIVEVMVLDVDADRRRISLG---IKQCQENPWEAFATSHPVGAM 376

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA--DLSKTYYVGQSVRSNILDVNSE 822
           V G + NI E G FV   G + G    S       A  ++ K +  GQ V + +L ++ +
Sbjct: 377 VKGEIKNITEFGLFVGLEGDIDGLVHLSDITWDTNAGEEVLKDFQKGQEVEAMVLSLDPD 436

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             RI+L LKQ+   +                             +WV+    G+V+ GKV
Sbjct: 437 KERISLGLKQAQPDAWG---------------------------QWVDANPKGNVVMGKV 469

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLA-----GATVESGSVIQAAILDVAKAERLVDLS 937
            E    GV+V   +  D  G I   + +     G  +   + ++  ++ V + +R + LS
Sbjct: 470 KEVLSSGVLVQLADEVD--GHIRKAEFSQDDREGTNLTLETEVECRVMQVDRQKRKISLS 527

Query: 938 LKTVFIDRFREA 949
           +K + + + R+A
Sbjct: 528 IKAMEVQQERDA 539



 Score = 48.1 bits (113), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 6/112 (5%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE--KEFPIGKLVAGRVLSVEP 1438
            +V+G +KN+T  G F+ L   +D  V LS+++       E  K+F  G+ V   VLS++P
Sbjct: 376  MVKGEIKNITEFGLFVGLEGDIDGLVHLSDITWDTNAGEEVLKDFQKGQEVEAMVLSLDP 435

Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              +R+ + LK +      Q    N      G++V+G++K V S G+ + + +
Sbjct: 436  DKERISLGLKQAQPDAWGQWVDANPK----GNVVMGKVKEVLSSGVLVQLAD 483


>gi|402299919|ref|ZP_10819481.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
 gi|401724905|gb|EJS98228.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
          Length = 383

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 154/332 (46%), Gaps = 53/332 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            + +G  ++G + KV+++ A + +        + +D     SEL       H+ K     V
Sbjct: 15   IVVGDVISGKITKVEDKQAFVDVG-------YKVDGVIPISELS----SLHVEK--VSDV 61

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGLV 1278
            LS++ E +L  L L   +  +S + V       ++Q     G+++   I+ ++ G  GLV
Sbjct: 62   LSVDDEVELKVLKLEDDELVLSKRAVQAEKAWVSLQNSFETGEVIETIIADVVKG--GLV 119

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V +G  + G +            P S  +    +  S Y +G+ ++ KV+E+ +      
Sbjct: 120  VDLG--VRGFI------------PASLVERHYVEDFSDY-KGKTLRLKVVELDKDNNKLI 164

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
               LS R  LD            +V+   KHL  ++ + P M+++G V+ +T+ G F+ L
Sbjct: 165  ---LSQRVVLD-----------EEVEKQKKHL--LQGIEPGMVIEGTVQRLTNFGAFVDL 208

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
               +D  V +S L+   VESP      G  V  +VLSV+  S+RV +++K  D+      
Sbjct: 209  G-GVDGLVHISQLAHHRVESPSDVVSEGDKVKVKVLSVDTESERVSLSIK--DTLPGPWE 265

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            +I     +  GD+V G +KR+ S+G FI + +
Sbjct: 266  KIEG--TISQGDVVSGTVKRLVSFGAFIEVAD 295



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PGMV++G V  + +FGA V   GGV  L  +  ++   +  P      G ++  +VL 
Sbjct: 186 IEPGMVIEGTVQRLTNFGAFVDL-GGVDGLVHISQLAHHRVESPSDVVSEGDKVKVKVLS 244

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  +S+R++++ K TL      I  + ++     +  G + ++   G F+   +GV+G  
Sbjct: 245 VDTESERVSLSIKDTLPGPWEKIEGTISQGD---VVSGTVKRLVSFGAFIEVADGVEGLV 301

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       PS +   G+ V+ +++      +RI+LS 
Sbjct: 302 HISQIANRHIGTPSEVLTEGEKVQAKVLDVNLDEKRISLSI 342



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 156/395 (39%), Gaps = 72/395 (18%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 643
           +  G ITK+E    FV     V G  P SEL      + S +  V   V+ +++      
Sbjct: 20  VISGKITKVEDKQAFVDVGYKVDGVIPISELSSLHVEKVSDVLSVDDEVELKVLKLEDDE 79

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
           +  S+R   +   +   VS  +  + G ++  ++  V    +VV +  +G+   ++   H
Sbjct: 80  LVLSKR---AVQAEKAWVSLQNSFETGEVIETIIADVVKGGLVVDLGVRGFIPASLVERH 136

Query: 704 LADHLEH---ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-- 758
             +        T+   V++          LD +++ L+LS +  L    +++     H  
Sbjct: 137 YVEDFSDYKGKTLRLKVVE----------LDKDNNKLILSQRVVL---DEEVEKQKKHLL 183

Query: 759 --IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
             I P  V+ G V  +   G FV  LG + G    S+    +    S     G  V+  +
Sbjct: 184 QGIEPGMVIEGTVQRLTNFGAFVD-LGGVDGLVHISQLAHHRVESPSDVVSEGDKVKVKV 242

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW--VEGFII 874
           L V++E+ R++LS+K +                                  W  +EG I 
Sbjct: 243 LSVDTESERVSLSIKDTLPGP------------------------------WEKIEGTIS 272

Query: 875 -GSVIEGKVHESNDFGVVVSFEEHSD-VYGFITHHQLAG-------ATVESGSVIQAAIL 925
            G V+ G V     FG   +F E +D V G +   Q+A          +  G  +QA +L
Sbjct: 273 QGDVVSGTVKRLVSFG---AFIEVADGVEGLVHISQIANRHIGTPSEVLTEGEKVQAKVL 329

Query: 926 DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
           DV   E+ + LS++ +  +   +  ++ ++ K++ 
Sbjct: 330 DVNLDEKRISLSIRALIEEDVEDHYADYESHKEEE 364


>gi|185535577|gb|ACC77867.1| 30S ribosomal protein S1 [Staphylococcus xylosus]
          Length = 393

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 18/248 (7%)

Query: 413 QSKVVRVDRGLGLLLDIPS---TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR-IL 468
           ++KV  V +G GL++D+      P S  +   I D +  E + L+ K +E      R IL
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSGFEGQILKLKVEELDPANNRVIL 170

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
             + +E L     K    E L         G V++GKV  + +FGA V   GGV  L  +
Sbjct: 171 SRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLVHV 222

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDR 586
             +S   +  P     +G  +  ++  V   S+RI+++ K TL     AI     E    
Sbjct: 223 SELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSPFEAIKGEINEGE-- 280

Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
            +  G + ++   G FV    GVQG    SE+       P  +   G+ V  +I+S  P 
Sbjct: 281 -VIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPE 339

Query: 647 SRRINLSF 654
           + RI+LS 
Sbjct: 340 NERISLSI 347



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 146/355 (41%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +++K G  V G+V  ++    IV   GG    + P+  +S   I  P    KVG E+   
Sbjct: 11  NEIKEGDKVTGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L K +L    SY    ++L         +T++ K G  V    G
Sbjct: 71  VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 663
            +GF P S +  D   E  S +  GQ++K ++    PA+ R+ LS   K     E     
Sbjct: 129 QRGFVPASLISTD-FIEDFSGFE-GQILKLKVEELDPANNRVILS--RKAVEALENAEKK 184

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D+L++    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVAI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  +D +S  + LS K +L +  + +  +   I+   V+ G V  +   G FV
Sbjct: 240 GDSVKVKIKSVDKDSERISLSIKDTLPSPFEAIKGE---INEGEVIEGTVVRLTNFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    G+ V   IL V+ E  RI+LS+K + 
Sbjct: 297 EIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPENERISLSIKATL 351



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 81/394 (20%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ IE+   I+H     F G +P + L+    +N    VK G  +   V 
Sbjct: 13  IKEGDKVTGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAYVT 72

Query: 285 -----------------RSIDRTRKVVYLSSDPD---TVSKCVTKDLKG-ISIDL----L 319
                            R ++  +   +L    D   T+   VT+ +KG + +D+     
Sbjct: 73  KVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDVGQRGF 132

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           VP  ++ST             F+  F+G          F     K    +    N R++ 
Sbjct: 133 VPASLIST------------DFIEDFSG----------FEGQILKLKVEELDPANNRVIL 170

Query: 380 VDPTSRAVGLTLNPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
              + +AV    N      LL +      +  GD+  + KV R+    G  +DI      
Sbjct: 171 ---SRKAVEALENAEKKDELLES------LNEGDVI-EGKVARL-TNFGAFVDIGGVD-- 217

Query: 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLVFT 492
               V +S+++ E V+  E     G  V+V+I    +  E ++  I     S FE +   
Sbjct: 218 --GLVHVSELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSPFEAI--- 272

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
             ++  G V++G V+ + +FGA V+   GV+ L  +  +S   I  PG+  + G ++  +
Sbjct: 273 KGEINEGEVIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVK 332

Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 584
           +L V  +++RI+++ K TL      I+ S +E T
Sbjct: 333 ILSVDPENERISLSIKATLPDEN--IIESDSETT 364



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 49/241 (20%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            DN QT       +  ++++++ G  GLVV +G    G V  + +    + D         
Sbjct: 106  DNNQT-------IEAKVTEVVKG--GLVVDVGQR--GFVPASLISTDFIED--------- 145

Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
                SG+ EGQ +K KV E+         V LS R +++ + +    D            
Sbjct: 146  ---FSGF-EGQILKLKVEELDP---ANNRVILS-RKAVEALENAEKKD------------ 185

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +E L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    IG  V 
Sbjct: 186  ELLESLNEGDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVKSPEDVVAIGDSVK 244

Query: 1431 GRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             ++ SV+  S+R+ +++K +      A + EIN       G+++ G + R+ ++G F+ I
Sbjct: 245  VKIKSVDKDSERISLSIKDTLPSPFEAIKGEINE------GEVIEGTVVRLTNFGAFVEI 298

Query: 1489 E 1489
            +
Sbjct: 299  Q 299



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 115/241 (47%), Gaps = 50/241 (20%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +   ++EGD++ G+++++ +   G  V IG  + G VH +EL +  V  P        
Sbjct: 185  DELLESLNEGDVIEGKVARLTNF--GAFVDIG-GVDGLVHVSELSHEHVKSPE------- 234

Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
             D ++    G  VK K+  + +    +  + LS++                  DT     
Sbjct: 235  -DVVAI---GDSVKVKIKSVDKD---SERISLSIK------------------DTLPSPF 269

Query: 1371 EKIE-DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            E I+ +++   +++G V  +T+ G F+ +   +   V +S +S  ++ +P +    G+ V
Sbjct: 270  EAIKGEINEGEVIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKV 329

Query: 1430 AGRVLSVEPLSKRVEVTLKT---------SDSRTASQSEINNLS----NLHVGDIVIGQI 1476
            + ++LSV+P ++R+ +++K          SDS T +QS +N+ S    N  +GD+   ++
Sbjct: 330  SVKILSVDPENERISLSIKATLPDENIIESDSET-TQSYLNDNSEDEDNPTLGDVFGDKL 388

Query: 1477 K 1477
            K
Sbjct: 389  K 389


>gi|430743122|ref|YP_007202251.1| 30S ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
 gi|430014842|gb|AGA26556.1| ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
          Length = 632

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 177/461 (38%), Gaps = 66/461 (14%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
           GD+  + KV R  +G GLL+DI      P++ V       I+D  + E+  +  K  EG 
Sbjct: 124 GDVV-KGKVTRKIKG-GLLVDIGVNVFLPASQVDIRRPSDIADYIDSEIECMILKIDEGR 181

Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
             R  ++  R L  +     K           ++++PG V  G V  +  FGA V   GG
Sbjct: 182 --RNIVVSRRKLIEITREQQKKQLL-------AEIEPGQVRMGTVKNIADFGAFVDL-GG 231

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSS 579
           +  L  +  MS   I  P    K+  ++   VL V   R  I +  K+        +   
Sbjct: 232 IDGLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVDKDREKIALGLKQKSASPWENVADK 291

Query: 580 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE-PSSMYHVGQVVKC 638
           Y   T R++  G +  +  +G FV+   G++G    SE+        PS +  +   ++ 
Sbjct: 292 YPVGT-RVM--GEVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRINHPSELVQISDKIEV 348

Query: 639 RIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGY 694
            ++      + I+L   MK T+ +  D V      G+++ G V  +T     + +     
Sbjct: 349 VVLGINKEKQEISLG--MKQTQTNPWDQVAGKYPPGTMIEGTVRNLTNYGAFIEI----- 401

Query: 695 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD----------QLLVLDNESSNLLLSAKYS 744
                  E   D L H + M    K G+  +          Q+L +D E   + L  K  
Sbjct: 402 -------EEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNVDQERKRIALGLK-- 452

Query: 745 LINSAQQLPSDA------SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
                 QL  D       +   PN VV G V  +   G FV     L G    S+  D +
Sbjct: 453 ------QLREDPWETDIPNRYEPNDVVKGKVTKLTNFGVFVELEPGLEGLLHISELADHK 506

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                +   VG  +   IL V+    +I LS K++  +  D
Sbjct: 507 VDSPEEVVKVGDDIEVKILRVDRGERKIGLSRKKAHWTKGD 547



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 105/232 (45%), Gaps = 38/232 (16%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
            HEGD+V G++++ + G  GL+V IG +++               P S  D  +   ++ Y
Sbjct: 122  HEGDVVKGKVTRKIKG--GLLVDIGVNVFL--------------PASQVDIRRPSDIADY 165

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
             + + ++C +L+I     G  ++ +S R  ++         L             + ++ 
Sbjct: 166  IDSE-IECMILKIDE---GRRNIVVSRRKLIEITREQQKKQL-------------LAEIE 208

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
            P  +  G VKN+   G F+ L   +D  + ++++S G +  P     I   +   VL V+
Sbjct: 209  PGQVRMGTVKNIADFGAFVDLG-GIDGLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVD 267

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
               +++ + LK    ++AS  E N      VG  V+G++  V SYG F+ +E
Sbjct: 268  KDREKIALGLK---QKSASPWE-NVADKYPVGTRVMGEVVNVMSYGAFVKLE 315



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 112/494 (22%), Positives = 188/494 (38%), Gaps = 97/494 (19%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           KA          S    G VVKGKV      G +V    GV    P    S+ +I +P  
Sbjct: 107 KAHRMRAWEMVISKYHEGDVVKGKVTRKIKGGLLVDI--GVNVFLP---ASQVDIRRPSD 161

Query: 542 KFK-VGAELVFRVLGVKSKR--ITVTHKK----TLVKSKLAILSSYAEATDRLITHGWIT 594
               + +E+   +L +   R  I V+ +K    T  + K  +L+       R+   G + 
Sbjct: 162 IADYIDSEIECMILKIDEGRRNIVVSRRKLIEITREQQKKQLLAEIEPGQVRM---GTVK 218

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            I   G FV    G+ G    +++       PS M  +   ++  ++       +I L  
Sbjct: 219 NIADFGAFVDL-GGIDGLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVDKDREKIALGL 277

Query: 655 MMKPTRVSED--DLVKLGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
             K     E+  D   +G+ V G VV+V++  A   +V  +   +G +       H+   
Sbjct: 278 KQKSASPWENVADKYPVGTRVMGEVVNVMSYGA---FVKLEEGIEGLV-------HISEM 327

Query: 712 TVMKSVIKPGYEFDQL--------LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
           +  K +  P  E  Q+        L ++ E   + L  K +  N   Q+   A    P +
Sbjct: 328 SWTKRINHPS-ELVQISDKIEVVVLGINKEKQEISLGMKQTQTNPWDQV---AGKYPPGT 383

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVG---------QSV 812
           ++ G V N+   G F+             + +DG    +D+S T  +G         Q +
Sbjct: 384 MIEGTVRNLTNYGAFIEI----------EEGIDGLLHISDMSWTRKIGHPNELLEKGQRL 433

Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
              +L+V+ E  RI L LKQ               L E+       +++  ++       
Sbjct: 434 SCQVLNVDQERKRIALGLKQ---------------LREDPWETDIPNRYEPND------- 471

Query: 873 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAIL 925
               V++GKV +  +FGV V  E    + G +   +LA   V+S       G  I+  IL
Sbjct: 472 ----VVKGKVTKLTNFGVFVELE--PGLEGLLHISELADHKVDSPEEVVKVGDDIEVKIL 525

Query: 926 DVAKAERLVDLSLK 939
            V + ER + LS K
Sbjct: 526 RVDRGERKIGLSRK 539



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 126/293 (43%), Gaps = 50/293 (17%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAVT 1217
            +G RV G V  V +  A + +   ++  + I + ++      PSEL +   +  +     
Sbjct: 294  VGTRVMGEVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRINHPSELVQISDKIEV----- 348

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              VL INKEK+ + L ++  Q    D+               G ++ G +  + +   G 
Sbjct: 349  -VVLGINKEKQEISLGMKQTQTNPWDQVA--------GKYPPGTMIEGTVRNLTNY--GA 397

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
             ++I   + G +H +++           +      P    ++GQ + C+VL + +  +  
Sbjct: 398  FIEIEEGIDGLLHISDMS----------WTRKIGHPNELLEKGQRLSCQVLNVDQERK-- 445

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
                   R +L G+         TD+  P ++        PN +V+G V  +T+ G F+ 
Sbjct: 446  -------RIAL-GLKQLREDPWETDI--PNRY-------EPNDVVKGKVTKLTNFGVFVE 488

Query: 1398 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            L   L+  + +S L+D  V+SPE+   +G  +  ++L V+   +++ ++ K +
Sbjct: 489  LEPGLEGLLHISELADHKVDSPEEVVKVGDDIEVKILRVDRGERKIGLSRKKA 541



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 63/113 (55%), Gaps = 4/113 (3%)

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSV 1436
            P  +++G V+N+T+ G FI +   +D  + +S++S    +  P +    G+ ++ +VL+V
Sbjct: 381  PGTMIEGTVRNLTNYGAFIEIEEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNV 440

Query: 1437 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +   KR+ + LK        +++I N       D+V G++ ++ ++G+F+ +E
Sbjct: 441  DQERKRIALGLKQL-REDPWETDIPN--RYEPNDVVKGKVTKLTNFGVFVELE 490


>gi|87119277|ref|ZP_01075175.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
 gi|86165668|gb|EAQ66935.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
          Length = 561

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 153/379 (40%), Gaps = 34/379 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +V
Sbjct: 187 ASLEEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIIAVGDEIDVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      +AI + Y E T        +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTK---VTAKVTNLTDYGCFAELEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               SE+   +    PS +  +G  V+  I+      RRI+L          E+      
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVQIGDEVEVMILDIDEERRRISLGVKQCTPNPWEEFATSYN 362

Query: 670 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  +SG +  +T   V +     G   G     HL+D     T  ++V   K G   + 
Sbjct: 363 KGDKISGGIKSITDFGVFI-----GLEGGIDGLVHLSDLSWDETGEEAVRQYKKGDNLET 417

Query: 727 -LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVR 780
            +L +D E   + L  K        QL  D     A+     ++V G V  +   G  V 
Sbjct: 418 VVLSIDAERERISLGVK--------QLEEDPFVGFAAENDKGAIVTGTVKEVDAKGAVVV 469

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               +      S+    +  D +     G SV + +++V+ +   I LS+KQ   S   A
Sbjct: 470 LAEGVEATLKVSELSRDRVEDATSVLKEGDSVEAAVINVDRKARTIALSIKQKDASEEKA 529

Query: 841 SFMQEHFLLEEKIAMLQSS 859
           + M+ H    EK A ++++
Sbjct: 530 A-MKSH---SEKAAQVEAN 544


>gi|366088527|ref|ZP_09455000.1| 30S ribosomal protein S1 [Lactobacillus acidipiscis KCTC 13900]
          Length = 397

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +  G VV+GKV  + +FGA V   GGV  L  +  +S   + KP    KVG ++  +V
Sbjct: 194 SKLAAGDVVEGKVARLTNFGAFVDL-GGVDGLVHVSEISYERVGKPSDVLKVGQDVKVKV 252

Query: 554 LGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V S R  I+++ K+TL +    I    AE     I  G + ++   G FV  + GV+G
Sbjct: 253 LSVDSDRDRISLSIKQTLPQPWDNINEKVAEGD---IIEGTVKRLTSFGAFVEVFPGVEG 309

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P+ +   G+ VK +++S    + R+ LS 
Sbjct: 310 LVHISQISHKHIATPNEVLTSGETVKAKVLSVDGENHRLALSI 352



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 139/351 (39%), Gaps = 58/351 (16%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL +    E      VG  +   ++S I  S +   SF++   R+      
Sbjct: 46  GVEGVVPARELSIKE-EEIEDKVKVGDNLDLVVISKI-GSDKEGGSFLLSQRRLEARKVW 103

Query: 664 DDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIK 719
           D++    + G  ++  V  V    +VV    +G+    IP   ++DH +E  +  K    
Sbjct: 104 DEIEQKFESGENITAPVTQVVKGGLVVDAGVRGF----IPASMVSDHFVEDLSQFK---- 155

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGC 777
            G E +  +V    S N L+ +   +  + ++       S +    VV G V  +   G 
Sbjct: 156 -GQELELKIVEIEPSENRLILSHKEIARAQREAKRQEIMSKLAAGDVVEGKVARLTNFGA 214

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV  LG + G    S+    +    S    VGQ V+  +L V+S+  RI+LS+KQ+    
Sbjct: 215 FVD-LGGVDGLVHVSEISYERVGKPSDVLKVGQDVKVKVLSVDSDRDRISLSIKQTLPQP 273

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D         + EK+A                    G +IEG V     FG  V  E  
Sbjct: 274 WDN--------INEKVAE-------------------GDIIEGTVKRLTSFGAFV--EVF 304

Query: 898 SDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
             V G      I+H  +A     + SG  ++A +L V      + LS+K +
Sbjct: 305 PGVEGLVHISQISHKHIATPNEVLTSGETVKAKVLSVDGENHRLALSIKAL 355



 Score = 47.0 bits (110), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            K  E +  L+   +V+G V  +T+ G F+ L   +D  V +S +S   V  P     +G+
Sbjct: 188  KRQEIMSKLAAGDVVEGKVARLTNFGAFVDLG-GVDGLVHVSEISYERVGKPSDVLKVGQ 246

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  +VLSV+    R+ +++K    +T  Q   N    +  GDI+ G +KR+ S+G F+ 
Sbjct: 247  DVKVKVLSVDSDRDRISLSIK----QTLPQPWDNINEKVAEGDIIEGTVKRLTSFGAFVE 302

Query: 1488 I 1488
            +
Sbjct: 303  V 303



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 156/352 (44%), Gaps = 33/352 (9%)

Query: 496 VKPGMVVKGKVIAV-DSFGAIVQFPG-GVKALCPLPHMS--EFEIVKPGKKFKVGAELVF 551
           VK G VVKG+V+A+ DS   IV   G GV+ + P   +S  E EI     K KVG  L  
Sbjct: 19  VKIGGVVKGEVLALDDSKQVIVGIEGTGVEGVVPARELSIKEEEI---EDKVKVGDNLDL 75

Query: 552 RVLG-VKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
            V+  + S +      ++ ++   +     +    E+ + +     +T++ K G  V   
Sbjct: 76  VVISKIGSDKEGGSFLLSQRRLEARKVWDEIEQKFESGENITAP--VTQVVKGGLVVDA- 132

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVS-- 662
            GV+GF P S +  D   E  S +  GQ ++ +I+   P+  R+ LS   + +  R +  
Sbjct: 133 -GVRGFIPASMVS-DHFVEDLSQFK-GQELELKIVEIEPSENRLILSHKEIARAQREAKR 189

Query: 663 EDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           ++ + KL  G +V G V  +T     V +   G   G +    ++   E       V+K 
Sbjct: 190 QEIMSKLAAGDVVEGKVARLTNFGAFVDL---GGVDGLVHVSEIS--YERVGKPSDVLKV 244

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++L +D++   + LS K +L    Q   +    +    ++ G V  +   G FV
Sbjct: 245 GQDVKVKVLSVDSDRDRISLSIKQTL---PQPWDNINEKVAEGDIIEGTVKRLTSFGAFV 301

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                + G    S+      A  ++    G++V++ +L V+ E  R+ LS+K
Sbjct: 302 EVFPGVEGLVHISQISHKHIATPNEVLTSGETVKAKVLSVDGENHRLALSIK 353



 Score = 40.0 bits (92), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 36/199 (18%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++++ L+  G  V   G  + G VH +E+    V  P         D L     
Sbjct: 199  GDVVEGKVAR-LTNFGAFVDLGG--VDGLVHVSEISYERVGKP--------SDVLK---V 244

Query: 1320 GQFVKCKVLEI-SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1378
            GQ VK KVL + S   R +  ++ +L    D ++                     E ++ 
Sbjct: 245  GQDVKVKVLSVDSDRDRISLSIKQTLPQPWDNIN---------------------EKVAE 283

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
              I++G VK +TS G F+ +   ++  V +S +S  ++ +P +    G+ V  +VLSV+ 
Sbjct: 284  GDIIEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPNEVLTSGETVKAKVLSVDG 343

Query: 1439 LSKRVEVTLKTSDSRTASQ 1457
             + R+ +++K    +  ++
Sbjct: 344  ENHRLALSIKALQDKPVAE 362


>gi|333994721|ref|YP_004527334.1| cytidylate kinase/30S ribosomal protein S1 [Treponema
           azotonutricium ZAS-9]
 gi|333737520|gb|AEF83469.1| cytidylate kinase/ribosomal protein S1 [Treponema azotonutricium
           ZAS-9]
          Length = 807

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 147/356 (41%), Gaps = 37/356 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++ + G  V G+V +  SFGA +   GG   L  +  MS   + +P    + G E+  +V
Sbjct: 427 ANTQIGADVTGEVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVRKGQEIRLKV 485

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 609
           +     RI    K+  +  K      +    D+     +  G +TK+   G F+    G+
Sbjct: 486 I-----RIDPAEKRINLSLKHFTDDPWVHFEDKYHVNDVVKGKVTKLTDFGAFIELEEGI 540

Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
           +G A  SE       + P  +  +G  V+C ++       +++L       +V+ +   +
Sbjct: 541 EGLAHISEFSWIKKIQKPEEVVSIGDEVECMVLGYDLQQGKVSLGL----KQVTANPWNE 596

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYEFD 725
           +G      V       VV    A  +    I  E   D   H    +  K V  PG E  
Sbjct: 597 IGDKYP--VGTRLTRKVVKLTNAGAF----IELEDGIDGFLHGDDISWTKKVKHPGSEIQ 650

Query: 726 -----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
                +++V+  + +S N+ L  K     S     S A+   P +++ G V +I + G F
Sbjct: 651 VGQEIEIMVIRVEKDSRNIKLGIKQL---SEDPWQSFAATYKPGTLMEGEVSSITDFGIF 707

Query: 779 VRFLGRLTGFAPRSKAVDGQRA---DLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           VR  G + G   ++   + +     D  K Y+VG  +++ +L++ S+  ++  S++
Sbjct: 708 VRVPGGIEGLIHKTNLPENREETPEDALKKYHVGDKIKAVVLEIQSDKQKVAFSIR 763



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P  K
Sbjct: 435  VTGEVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVRKGQEIRLKVIRIDPAEK 493

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK           ++     HV D+V G++ ++  +G FI +E
Sbjct: 494  RINLSLK----HFTDDPWVHFEDKYHVNDVVKGKVTKLTDFGAFIELE 537



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 151/360 (41%), Gaps = 32/360 (8%)

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
           G  V+  V+S    G  +  L  F G + I  + +    T  K+   + +++  +++ +D
Sbjct: 432 GADVTGEVKSFTSFGAFID-LGGFDGLLHINDM-SWGHVTRPKDFVRKGQEIRLKVIRID 489

Query: 382 PTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPST 432
           P  + + L+L     +P++   ++   + V   KV  + D    + ++ G+  L  I   
Sbjct: 490 PAEKRINLSLKHFTDDPWVHFEDKYHVNDVVKGKVTKLTDFGAFIELEEGIEGLAHI--- 546

Query: 433 PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
             S  +++       ++++K E+    G  V   +LG+   +G  +  LK          
Sbjct: 547 --SEFSWI-------KKIQKPEEVVSIGDEVECMVLGYDLQQGKVSLGLKQVTANPWNEI 597

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVF 551
                 G  +  KV+ + + GA ++   G+        +S  + VK PG + +VG E+  
Sbjct: 598 GDKYPVGTRLTRKVVKLTNAGAFIELEDGIDGFLHGDDISWTKKVKHPGSEIQVGQEIEI 657

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            V+ V+  S+ I +  K+       +  ++Y   T   +  G ++ I   G FVR   G+
Sbjct: 658 MVIRVEKDSRNIKLGIKQLSEDPWQSFAATYKPGT---LMEGEVSSITDFGIFVRVPGGI 714

Query: 610 QGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
           +G   ++ L  +    P      YHVG  +K  ++      +++  S      +V +D+L
Sbjct: 715 EGLIHKTNLPENREETPEDALKKYHVGDKIKAVVLEIQSDKQKVAFSIRDYQKKVQQDEL 774



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 124/320 (38%), Gaps = 54/320 (16%)

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
            GQ +R  ++ ++    RI LSLK      TD  ++  HF  E+K                
Sbjct: 478  GQEIRLKVIRIDPAEKRINLSLKHF----TDDPWV--HF--EDK---------------- 513

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQA 922
               + +  V++GKV +  DFG  +  EE      H   + +I   Q     V  G  ++ 
Sbjct: 514  ---YHVNDVVKGKVTKLTDFGAFIELEEGIEGLAHISEFSWIKKIQKPEEVVSIGDEVEC 570

Query: 923  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
             +L     +  V L LK V  + + E         +  ++       V +  NA   I  
Sbjct: 571  MVLGYDLQQGKVSLGLKQVTANPWNEIGDKYPVGTRLTRK-------VVKLTNAGAFIEL 623

Query: 983  ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
            E+     +  + H      +S     K P  +   GQ +   +M +     +  + L +K
Sbjct: 624  ED----GIDGFLHG---DDISWTKKVKHPGSEIQVGQEI--EIMVIRVEKDSRNIKLGIK 674

Query: 1043 AISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
             +SE    S       ++Y  G+L++ E++ I    + ++   G  G IH T + +++  
Sbjct: 675  QLSEDPWQSF-----AATYKPGTLMEGEVSSITDFGIFVRVPGGIEGLIHKTNLPENREE 729

Query: 1103 VVENLFSNFKIGQTVTARII 1122
              E+    + +G  + A ++
Sbjct: 730  TPEDALKKYHVGDKIKAVVL 749



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 96/471 (20%), Positives = 182/471 (38%), Gaps = 66/471 (14%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EIVKPGKKFKVGAELVFRV 553
           +++ G +++G VI V S    +    G K+   +P ++EF EI K G+K +V    +   
Sbjct: 260 NLEEGQLIEGYVIQVTSDQVFINI--GYKSEGKIP-ITEFTEIPKEGEKVQV----ILEK 312

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           +  +   + V+ +K  VK     L    +  D  +  G I K+ K G  V    GV  F 
Sbjct: 313 MEDRHGEVVVSKQKADVKIFWKNLRQAFQ--DHTMIEGTIEKLVKGGYDVNLGAGVHAFL 370

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSS-----IPASRRINLSFMMKPTRVSEDDLVK 668
           P S+       +P  +  +        + S     I  +RR  +   ++  R       +
Sbjct: 371 PISQSDAQKVDKPEKLLELKSPFYVERLYSDGKVNIVVNRRKWIEEEIEQKRSDFFANTQ 430

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-Q 726
           +G+ V+G V   T     + +   G   G +   H+ D    H T  K  ++ G E   +
Sbjct: 431 IGADVTGEVKSFTSFGAFIDL---GGFDGLL---HINDMSWGHVTRPKDFVRKGQEIRLK 484

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           ++ +D     + LS K+   +       D  H+  N VV G V  + + G F+     + 
Sbjct: 485 VIRIDPAEKRINLSLKHFTDDPWVHF-EDKYHV--NDVVKGKVTKLTDFGAFIELEEGIE 541

Query: 787 GFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
           G A  S+    ++     +   +G  V   +L  + + G+++L LKQ   +         
Sbjct: 542 GLAHISEFSWIKKIQKPEEVVSIGDEVECMVLGYDLQQGKVSLGLKQVTANP-------- 593

Query: 846 HFLLEEKIAMLQSSKHNGSELKWVE---GFIIGSVIEGKVHESNDFGVVVSFEE------ 896
                                 W E    + +G+ +  KV +  + G  +  E+      
Sbjct: 594 ----------------------WNEIGDKYPVGTRLTRKVVKLTNAGAFIELEDGIDGFL 631

Query: 897 HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
           H D   +    +  G+ ++ G  I+  ++ V K  R + L +K +  D ++
Sbjct: 632 HGDDISWTKKVKHPGSEIQVGQEIEIMVIRVEKDSRNIKLGIKQLSEDPWQ 682


>gi|406903916|gb|EKD45849.1| hypothetical protein ACD_69C00107G0001 [uncultured bacterium]
          Length = 585

 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 152/355 (42%), Gaps = 36/355 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G  V G V  +  +GA +   GG+  L  +  +S   I  P +  K+G E+  +V
Sbjct: 221 SSLEEGSEVTGVVKNLTDYGAFIDL-GGIDGLLHITDISWKRIRHPSELLKLGDEVRVKV 279

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L       R+++  K+        I   Y   T R+  H  +T I  +GCFV   +G++G
Sbjct: 280 LKYDRDKNRVSLGLKQLAEDPWYGIGRRYPVGT-RVFGH--VTNITDYGCFVEIESGIEG 336

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVK 668
               SE+   +    PS +   GQ V+  ++      RRI+L      +   ++  +L  
Sbjct: 337 LVHMSEINWTNKNVHPSKVVSQGQEVEVMVLEIDEERRRISLGMKQCKSNPWKEYSNLHA 396

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G ++ G +  +T     +++  +G   G +   HL+D        K++   K G E + 
Sbjct: 397 KGEIIKGTIKSITDFG--IFIGLEGDIDGLV---HLSDISWSDPGEKAIRNYKKGQEIET 451

Query: 727 -LLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVR 780
            +L +D E   + L  K        QL  D  A ++  N   ++V G V  +      V 
Sbjct: 452 VILAIDAERERISLGIK--------QLEQDIYAQYLEKNPKGTIVEGIVTEVDAKAAVVD 503

Query: 781 FLGRLTGFAPRSKAVDGQRA---DLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               + G   + KA D  R    D S+   VG S+ + IL V+ ++  + LS+K+
Sbjct: 504 LGNDIIG---KVKAHDVSREKVKDASELLKVGDSIEAKILGVDKKSHVVNLSIKE 555



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 18/331 (5%)

Query: 367 YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL--- 423
           Y + K++  +I+ VD     + ++    L+    P     +  + + S+V  V + L   
Sbjct: 180 YIEGKELEFKIIKVDKKQNNIVVSRRAALMAESTPEREALLSSLEEGSEVTGVVKNLTDY 239

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
           G  +D+          + I+D++ + +R   +  K G  VRV++L +   +   +  LK 
Sbjct: 240 GAFIDLGGID----GLLHITDISWKRIRHPSELLKLGDEVRVKVLKYDRDKNRVSLGLKQ 295

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI----VKP 539
            A +           G  V G V  +  +G  V+   G++ L    HMSE       V P
Sbjct: 296 LAEDPWYGIGRRYPVGTRVFGHVTNITDYGCFVEIESGIEGLV---HMSEINWTNKNVHP 352

Query: 540 GKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
            K    G E+   VL +  +R  ++      KS      S   A   +I  G I  I   
Sbjct: 353 SKVVSQGQEVEVMVLEIDEERRRISLGMKQCKSNPWKEYSNLHAKGEII-KGTIKSITDF 411

Query: 600 GCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
           G F+     + G    S++   DPG +    Y  GQ ++  I++      RI+L      
Sbjct: 412 GIFIGLEGDIDGLVHLSDISWSDPGEKAIRNYKKGQEIETVILAIDAERERISLGIKQLE 471

Query: 659 TRVSEDDLVK--LGSLVSGVVDVVTPNAVVV 687
             +    L K   G++V G+V  V   A VV
Sbjct: 472 QDIYAQYLEKNPKGTIVEGIVTEVDAKAAVV 502



 Score = 47.8 bits (112), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 9/111 (8%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLS--NLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            V G+V N+T  GCF+ +   ++  V +S  N ++  V  P K    G+ V   VL ++  
Sbjct: 314  VFGHVTNITDYGCFVEIESGIEGLVHMSEINWTNKNVH-PSKVVSQGQEVEVMVLEIDEE 372

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIE 1489
             +R+ + +K   S    +      SNLH  G+I+ G IK +  +G+FI +E
Sbjct: 373  RRRISLGMKQCKSNPWKE-----YSNLHAKGEIIKGTIKSITDFGIFIGLE 418



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 147/373 (39%), Gaps = 73/373 (19%)

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINL 652
            G F    N ++ F P S +   P  + S  Y  G+ ++ +I+      ++I  SRR  L
Sbjct: 151 RGGFTVEINKIRSFLPGSLVDTKPVRDTS--YIEGKELEFKIIKVDKKQNNIVVSRRAAL 208

Query: 653 SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HL 708
                P R +    ++ GS V+GVV  +T     + +   G   G +   H+ D     +
Sbjct: 209 MAESTPEREALLSSLEEGSEVTGVVKNLTDYGAFIDL---GGIDGLL---HITDISWKRI 262

Query: 709 EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH----IHP-N 762
            H +    ++K G E   ++L  D + + + L  K        QL  D  +     +P  
Sbjct: 263 RHPS---ELLKLGDEVRVKVLKYDRDKNRVSLGLK--------QLAEDPWYGIGRRYPVG 311

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA-VDGQRADLSKTYYVGQSVRSNILDVNS 821
           + V G+V NI + GCFV     + G    S+     +    SK    GQ V   +L+++ 
Sbjct: 312 TRVFGHVTNITDYGCFVEIESGIEGLVHMSEINWTNKNVHPSKVVSQGQEVEVMVLEIDE 371

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
           E  RI+L +KQ  C S      +E+  L  K                      G +I+G 
Sbjct: 372 ERRRISLGMKQ--CKSNP---WKEYSNLHAK----------------------GEIIKGT 404

Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERL 933
           +    DFG+ +  E   D+ G +    ++ +          + G  I+  IL +      
Sbjct: 405 IKSITDFGIFIGLE--GDIDGLVHLSDISWSDPGEKAIRNYKKGQEIETVILAIDAERER 462

Query: 934 VDLSLKTVFIDRF 946
           + L +K +  D +
Sbjct: 463 ISLGIKQLEQDIY 475


>gi|239948027|ref|ZP_04699780.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922303|gb|EER22327.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 568

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 154/363 (42%), Gaps = 24/363 (6%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEMLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKK---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359

Query: 656 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
               +  E+ L+K      +G+++   +  +T  ++  +V       G I    ++   +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTVIKAPIRNITDFSI--FVALGNNMDGMIHESDISWEDK 414

Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
              ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   
Sbjct: 415 GTDLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKAL 470

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           +  + + G  V    ++ GF  R++  D +     + + + + + + ++ +   TGRI L
Sbjct: 471 ITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILL 530

Query: 829 SLK 831
           S+K
Sbjct: 531 SVK 533



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 132/602 (21%), Positives = 244/602 (40%), Gaps = 103/602 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLALPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + M        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEM-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +         + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKKMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                 +K+ E   +G+VI+  +    DF + V+   +
Sbjct: 363  ------QENPL-----------------IKFAENNPVGTVIKAPIRNITDFSIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + +   
Sbjct: 400  MD--GMIHESDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPY--- 454

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                        +E S +      V A++  VK++ L + L   N   G+   ++ + +K
Sbjct: 455  ------------QEISDEYKKGTIVKALITEVKDDGLEVLL--NNKVAGFIKRTELSDEK 500

Query: 1010 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 1065
              QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G 
Sbjct: 501  DEQKPEMFKIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558

Query: 1066 LV 1067
            ++
Sbjct: 559  IL 560


>gi|449124150|ref|ZP_21760469.1| ribosomal protein S1 [Treponema denticola OTK]
 gi|448942481|gb|EMB23375.1| ribosomal protein S1 [Treponema denticola OTK]
          Length = 811

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 143/357 (40%), Gaps = 41/357 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV- 553
           + K G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V 
Sbjct: 439 NTKIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVI 497

Query: 554 -LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            L   +KRI ++ K       L     +    D ++T G +TK    G F+    G++G 
Sbjct: 498 RLDPDNKRINLSLKHFTQDPWLQFEEKFH--VDDIVT-GTVTKTTDFGAFIELDEGIEGL 554

Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
           A  SE   +    +P  +   G  V C I+     + R++L        P    E+    
Sbjct: 555 AHISEFSWVKKINKPEDILKPGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTIEERYPV 614

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYEFD 725
              L   VV +    A              I  E   D   HA   + +K V  PG E +
Sbjct: 615 GTRLTRKVVKITNAGAF-------------ISLEEGIDGFLHADDISWIKRVKHPGSELE 661

Query: 726 -----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
                +++V+  D ES  + L  K    +  ++     +     S+V G V +I + G F
Sbjct: 662 VGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKF---GAAYKVGSIVEGEVSSITDFGVF 718

Query: 779 VRFLGRLTGFAPRSKAVDGQ----RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+  G + G   +   V+ +       L+K Y VG  +++ ++++N    +   S+K
Sbjct: 719 VKVPGDIEGLIHKQNLVESRDETPEEALAK-YAVGDKIKAVVIEINPRNKKTAFSIK 774



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P +K
Sbjct: 446  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPDNK 504

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK        Q E       HV DIV G + +   +G FI ++
Sbjct: 505  RINLSLKHFTQDPWLQFE----EKFHVDDIVTGTVTKTTDFGAFIELD 548



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 114/554 (20%), Positives = 208/554 (37%), Gaps = 109/554 (19%)

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           + +E  + G ++A   E  +      + G + +G V+AV++    V   G  +   PL  
Sbjct: 245 KDVEKDSNGNIQAQLQEEYLNNFEAPEAGTIKEGYVVAVNNGTVFVDVGGKSEGHIPLDE 304

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLIT 589
             E    +P    KV  ++   +   +S    +   K L   +L +   + +A  D+   
Sbjct: 305 FDE----EP----KVNDKVNVLIEKTESSNGHLAVSK-LKADRLILQKEFKQAYADKTPI 355

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQV-VKCRIMS 642
            G I K  + G  V+   G+  F P S+  +    +P ++      +++ ++    R   
Sbjct: 356 EGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLVGVKSKFYIEKLSFNSRSGE 415

Query: 643 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           +I  +RR  +    +  R +     K+G  V G V   T     + +   G   G +   
Sbjct: 416 NIVVNRRKYIEGRTEKERDAFFQNTKIGDTVKGTVKSFTSFGAFIDL---GGFDGLL--- 469

Query: 703 HLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           H+ D    H T  K  +K G E + +++ LD ++  + LS K+   +   Q        H
Sbjct: 470 HINDMSWGHVTRPKDFVKKGEEIELKVIRLDPDNKRINLSLKHFTQDPWLQF---EEKFH 526

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSN 815
            + +V G V    + G F+     + G A  S     K ++ +  D+ K    G  V   
Sbjct: 527 VDDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKIN-KPEDILKP---GDKVTCM 582

Query: 816 ILDVNSETGRITLSLKQSCCSSTD----------------------ASFMQ-----EHFL 848
           IL  + + GR++L LKQ   +  D                       +F+      + FL
Sbjct: 583 ILGYDIQAGRVSLGLKQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFL 642

Query: 849 LEEKIAMLQSSKHNGSEL---------------------------------KWVEGFIIG 875
             + I+ ++  KH GSEL                                 K+   + +G
Sbjct: 643 HADDISWIKRVKHPGSELEVGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVG 702

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAIL 925
           S++EG+V    DFGV V      D+ G I    L  +  E+          G  I+A ++
Sbjct: 703 SIVEGEVSSITDFGVFVKV--PGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVI 760

Query: 926 DVAKAERLVDLSLK 939
           ++    +    S+K
Sbjct: 761 EINPRNKKTAFSIK 774


>gi|449991519|ref|ZP_21821890.1| 30S ribosomal protein S1 [Streptococcus mutans NVAB]
 gi|449181130|gb|EMB83257.1| 30S ribosomal protein S1 [Streptococcus mutans NVAB]
          Length = 399

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +V+ VD   A +   G GV+A+  L  ++        + VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         D +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGDVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA------SRRIN 651
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    P+      SRR  
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQQFEAKIKEIDPSENRFILSRRDV 175

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           +       R      + +G +V+G V  +T     + +   G   G I    L+ H E  
Sbjct: 176 VEAAAAKAREEVFSRLAVGDIVTGTVARLTSFGAFIDL---GGVDGLIHITELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SRLAVGDIVTGTVARLTSFGAFID-LGGVDGLIHITELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +  +R  +  SN   RQ++ +++KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALE-ERPAQDESNGEKRQSRPRRQKRQDKRDYELPET 384



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLIHITELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D+
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQDE 358



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G +H TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLIHITELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTASQSEIN 1461
             +RV +++K  + R A Q E N
Sbjct: 340  DERVSLSIKALEERPA-QDESN 360



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  + ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLIHITELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 298


>gi|90021782|ref|YP_527609.1| 30S ribosomal protein S1 [Saccharophagus degradans 2-40]
 gi|89951382|gb|ABD81397.1| SSU ribosomal protein S1P [Saccharophagus degradans 2-40]
          Length = 560

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 148/367 (40%), Gaps = 33/367 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ GM VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +V
Sbjct: 187 ANLQEGMAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVAVGDEIDVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+       AI   Y E          IT +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWSAITQRYPEGAK---VKARITNLTDYGCFAEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    PS +  +G  V+  I+      RRI+L        P     +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVSLGDEVEVMILDIDEERRRISLGIKQCQENPWDAFSNQFA 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  +SG +  +T   + +     G   G     HL+D   +    ++V   K G E +
Sbjct: 363 K-GDKISGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNEAGEEAVRKFKKGDEIE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFV 779
             +L +D E   + L  K        QL  D  ++++  N   ++V G V  +      +
Sbjct: 417 TVVLAIDPERERISLGVK--------QLDEDPFSAYVAENDKGTIVTGTVKEVDAKEAVI 468

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                +TG    S+    +  D       G  V + I +V+ +   I LS+K    +   
Sbjct: 469 LLADDITGTLKASEISRDKVEDARNVLKEGDEVEAKITNVDRKNRAIILSVKAKDVADEK 528

Query: 840 ASFMQEH 846
           A+ ++EH
Sbjct: 529 AA-IKEH 534



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 167/421 (39%), Gaps = 73/421 (17%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+ PG +V G VI +D     V    G+K+   +P   +F   K   +  +G E+   + 
Sbjct: 17  DMVPGSIVTGVVIDIDQDWVTVH--AGLKSEGVIP-AEQFYNDKGELELSIGDEVQVALE 73

Query: 555 GVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V+       ++ +K        +L +  +A + +IT     K++  G F     G++ F
Sbjct: 74  SVEDGFGETRLSREKAKRAESWKVLEAAHDA-EEVITGVINGKVK--GGFTVDVAGIRAF 130

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 666
            P S + + P  E + +   G+ ++ +++      +++  SRR  +       R  E+ L
Sbjct: 131 LPGSLVDVRPVRETTHLE--GKELEFKVIKLDQRRNNVVVSRRAVMEQANSEER--EELL 186

Query: 667 VKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             L  G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E
Sbjct: 187 ANLQEGMAVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRIKHPS---EIVAVGDE 240

Query: 724 FD-QLLVLDNESSNLLLSAK------YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
            D ++L  D E + + L  K      +S I   Q+ P  A        V   + N+ + G
Sbjct: 241 IDVKVLKFDRERNRVSLGLKQLGEDPWSAIT--QRYPEGAK-------VKARITNLTDYG 291

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           CF      + G    S+ +D    ++  SK   +G  V   ILD++ E  RI+L +KQ  
Sbjct: 292 CFAEIEEGVEGLVHVSE-MDWTNKNIHPSKVVSLGDEVEVMILDIDEERRRISLGIKQCQ 350

Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            +  DA   Q                           F  G  I GK+    DFG+ +  
Sbjct: 351 ENPWDAFSNQ---------------------------FAKGDKISGKIKSITDFGIFIGL 383

Query: 895 E 895
           +
Sbjct: 384 D 384


>gi|365853598|ref|ZP_09393865.1| putative ribosomal protein S1 [Lactobacillus parafarraginis F0439]
 gi|363712223|gb|EHL95922.1| putative ribosomal protein S1 [Lactobacillus parafarraginis F0439]
          Length = 409

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G +V+GKV  + SFGA V   GG+  L  +  ++   + KP    KVG E+  +VL V  
Sbjct: 200 GDIVEGKVARLTSFGAFVDL-GGMDGLVHVSQIAYERVDKPSDVLKVGQEVKVKVLSVDF 258

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
              RI+++ K+TL +    I       +   +  G + ++   G FV  + GV+G    S
Sbjct: 259 DRNRISLSIKQTLPEPWDGIEEKAPAGS---VLEGTVKRLVDFGAFVEVFPGVEGLVHIS 315

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++  +    P  +  VG+ +K +++   P  +R+ LS 
Sbjct: 316 QISHEHIATPGDVLKVGEQIKVKVLDVDPERKRLALSI 353



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 154/368 (41%), Gaps = 63/368 (17%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR-IMSSIPASRRINLSFMMKPTRVSE--- 663
           GV+G  P+ EL         +   + Q  K + +++S   S +   SF++   R+     
Sbjct: 49  GVEGVVPQREL-----SSSQNFDDIKQGDKLQLVVTSRIGSDKEGGSFLLSSRRLEARKV 103

Query: 664 -DDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVI 718
            D+L    K    ++  V       +VV    +G+    IP   ++DH +E     K   
Sbjct: 104 WDELAEKSKNDETITAKVSQAVKGGLVVDAGVRGF----IPASMISDHYVEDLNQFK--- 156

Query: 719 KPGYEFD-QLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             G E + +++ +D  ++ L+LS K  L    AQ+      ++H   +V G V  +   G
Sbjct: 157 --GQELELKIIEIDPVANRLILSHKAILQAQRAQEREKLMENLHEGDIVEGKVARLTSFG 214

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            FV  LG + G    S+    +    S    VGQ V+  +L V+ +  RI+LS+KQ+   
Sbjct: 215 AFVD-LGGMDGLVHVSQIAYERVDKPSDVLKVGQEVKVKVLSVDFDRNRISLSIKQTLPE 273

Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
             D         +EEK                      GSV+EG V    DFG  V  E 
Sbjct: 274 PWDG--------IEEKAPA-------------------GSVLEGTVKRLVDFGAFV--EV 304

Query: 897 HSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
              V G      I+H  +A  G  ++ G  I+  +LDV    + + LS+K    D+ +E+
Sbjct: 305 FPGVEGLVHISQISHEHIATPGDVLKVGEQIKVKVLDVDPERKRLALSIKA-LTDKPKES 363

Query: 950 NSNRQAQK 957
           +S+   ++
Sbjct: 364 SSHESTRR 371



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 18/236 (7%)

Query: 360 TTNWKNDYNQHK--KVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYD 412
           + ++  D NQ K  ++  +I+ +DP +  + L+    L   RA        ++  GDI  
Sbjct: 145 SDHYVEDLNQFKGQELELKIIEIDPVANRLILSHKAILQAQRAQEREKLMENLHEGDIV- 203

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
           + KV R+    G  +D+          V +S +A E V K     K G  V+V++L    
Sbjct: 204 EGKVARL-TSFGAFVDLGGMD----GLVHVSQIAYERVDKPSDVLKVGQEVKVKVLSVDF 258

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
                +  +K +  E           G V++G V  +  FGA V+   GV+ L  +  +S
Sbjct: 259 DRNRISLSIKQTLPEPWDGIEEKAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIS 318

Query: 533 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 586
              I  PG   KVG ++  +VL V  + KR+ ++ K    K K    SS  E+T R
Sbjct: 319 HEHIATPGDVLKVGEQIKVKVLDVDPERKRLALSIKALTDKPK---ESSSHESTRR 371



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 148/350 (42%), Gaps = 27/350 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMS---EFEIVKPGKKFKVGAE 548
           S+V  G VV G+V+A D    ++      GV+ + P   +S    F+ +K G K ++   
Sbjct: 20  SEVNVGDVVTGEVLAKDDDQQLIVGIEDTGVEGVVPQRELSSSQNFDDIKQGDKLQL--V 77

Query: 549 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           +  R+   K     +   + L   K+    +     D  IT   +++  K G  V    G
Sbjct: 78  VTSRIGSDKEGGSFLLSSRRLEARKVWDELAEKSKNDETIT-AKVSQAVKGGLVVDA--G 134

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL 666
           V+GF P S +  D   E  + +  GQ ++ +I+   P + R+ LS   +++  R  E + 
Sbjct: 135 VRGFIPASMIS-DHYVEDLNQFK-GQELELKIIEIDPVANRLILSHKAILQAQRAQEREK 192

Query: 667 V----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
           +      G +V G V  +T     V +   G   G +    +A   E       V+K G 
Sbjct: 193 LMENLHEGDIVEGKVARLTSFGAFVDL---GGMDGLVHVSQIA--YERVDKPSDVLKVGQ 247

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           E   ++L +D + + + LS K +L      +   A      SV+ G V  +++ G FV  
Sbjct: 248 EVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAP---AGSVLEGTVKRLVDFGAFVEV 304

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + G    S+      A       VG+ ++  +LDV+ E  R+ LS+K
Sbjct: 305 FPGVEGLVHISQISHEHIATPGDVLKVGEQIKVKVLDVDPERKRLALSIK 354



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 38/195 (19%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +HEGDIV G+++++ S   G  V +G  + G VH +++    V  P         D L  
Sbjct: 197  LHEGDIVEGKVARLTSF--GAFVDLG-GMDGLVHVSQIAYERVDKP--------SDVLK- 244

Query: 1317 YDEGQFVKCKVLEIS-RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               GQ VK KVL +     R +  ++ +L    DG                      IE+
Sbjct: 245  --VGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDG----------------------IEE 280

Query: 1376 LSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
             +P   +++G VK +   G F+ +   ++  V +S +S  ++ +P     +G+ +  +VL
Sbjct: 281  KAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQISHEHIATPGDVLKVGEQIKVKVL 340

Query: 1435 SVEPLSKRVEVTLKT 1449
             V+P  KR+ +++K 
Sbjct: 341  DVDPERKRLALSIKA 355



 Score = 40.4 bits (93), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L    IV+G V  +TS G F+ L   +D  V +S ++   V+ P     +G+ V  +
Sbjct: 194  MENLHEGDIVEGKVARLTSFGAFVDLG-GMDGLVHVSQIAYERVDKPSDVLKVGQEVKVK 252

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            VLSV+    R+ +++K +        E         G ++ G +KR+  +G F+ +
Sbjct: 253  VLSVDFDRNRISLSIKQTLPEPWDGIE----EKAPAGSVLEGTVKRLVDFGAFVEV 304


>gi|406670706|ref|ZP_11077951.1| ribosomal protein S1 [Facklamia hominis CCUG 36813]
 gi|405582222|gb|EKB56228.1| ribosomal protein S1 [Facklamia hominis CCUG 36813]
          Length = 449

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+++ G +V+GKV  + +FGA +   GGV  L  +  ++   +  P  K  VG  +  ++
Sbjct: 210 SELEEGSIVEGKVARLTNFGAFIDL-GGVDGLVHISRIAHEHVKHPSDKLTVGDTVEVKI 268

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L +  +  RI+++ K TL      I    +E T   +  G + ++   G FV  + GV+G
Sbjct: 269 LSIDEEEGRISLSIKDTLPGPWDDIEEKASEGT---VLKGVVKRLVSFGAFVEVFPGVEG 325

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++  +    PS     GQ V+ +++S+ P  +R++LS 
Sbjct: 326 LVHISQICHEHIETPSDRLSEGQEVEVKVLSADPQEKRLSLSI 368



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 149/375 (39%), Gaps = 57/375 (15%)

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
           ++   G++G  P++EL      +PS +  +G  ++  ++   P   + N ++++   R+ 
Sbjct: 57  IKNSGGLEGVIPKNELATSRVEDPSEVVSIGDELELVVVK--PIKDKENGNYLLSKKRID 114

Query: 663 --------EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
                   E+      ++ + V DVV    VV   +     +G +P   + D+  +    
Sbjct: 115 ARKVWAELEEKHANKETIEAPVKDVVKGGLVVDAGV-----RGFVPASMVEDY--YVDDF 167

Query: 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNII 773
            S      EF Q++ LD   + L+LS K       ++  S   S +   S+V G V  + 
Sbjct: 168 SSYKGQTLEF-QIVELDPADNRLILSHKEIARQKREEERSQRLSELEEGSIVEGKVARLT 226

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G F+  LG + G    S+         S    VG +V   IL ++ E GRI+LS+K +
Sbjct: 227 NFGAFID-LGGVDGLVHISRIAHEHVKHPSDKLTVGDTVEVKILSIDEEEGRISLSIKDT 285

Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                D         +EEK +                    G+V++G V     FG  V 
Sbjct: 286 LPGPWDD--------IEEKASE-------------------GTVLKGVVKRLVSFGAFV- 317

Query: 894 FEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
            E    V G +   Q+    +E+       G  ++  +L     E+ + LS+K   +DR 
Sbjct: 318 -EVFPGVEGLVHISQICHEHIETPSDRLSEGQEVEVKVLSADPQEKRLSLSIKA-LLDRP 375

Query: 947 REANSNRQAQKKKRK 961
            +    ++   K R+
Sbjct: 376 ADFEEKQEEAPKPRR 390



 Score = 43.9 bits (102), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 64/118 (54%), Gaps = 5/118 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            +++ +L    IV+G V  +T+ G FI L   +D  V +S ++  +V+ P  +  +G  V 
Sbjct: 207  QRLSELEEGSIVEGKVARLTNFGAFIDLG-GVDGLVHISRIAHEHVKHPSDKLTVGDTVE 265

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             ++LS++    R+ +++K  D+      +I   ++   G ++ G +KR+ S+G F+ +
Sbjct: 266  VKILSIDEEEGRISLSIK--DTLPGPWDDIEEKAS--EGTVLKGVVKRLVSFGAFVEV 319



 Score = 43.5 bits (101), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 34/199 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            + EG IV G++++ L+  G  +   G  + G VH + + +  V  P         D L+ 
Sbjct: 212  LEEGSIVEGKVAR-LTNFGAFIDLGG--VDGLVHISRIAHEHVKHP--------SDKLTV 260

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               G  V+ K+L I         + LS++ +L G               P   +E  E  
Sbjct: 261  ---GDTVEVKILSIDEE---EGRISLSIKDTLPG---------------PWDDIE--EKA 297

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            S   +++G VK + S G F+ +   ++  V +S +   ++E+P      G+ V  +VLS 
Sbjct: 298  SEGTVLKGVVKRLVSFGAFVEVFPGVEGLVHISQICHEHIETPSDRLSEGQEVEVKVLSA 357

Query: 1437 EPLSKRVEVTLKTSDSRTA 1455
            +P  KR+ +++K    R A
Sbjct: 358  DPQEKRLSLSIKALLDRPA 376


>gi|374314868|ref|YP_005061296.1| 30S ribosomal protein S1 [Sphaerochaeta pleomorpha str. Grapes]
 gi|359350512|gb|AEV28286.1| ribosomal protein S1 [Sphaerochaeta pleomorpha str. Grapes]
          Length = 573

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 149/357 (41%), Gaps = 27/357 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S V+ G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 195 STVQIGDVVEGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQVVQLRL 253

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + +  ++++I ++ K  + +             D  +    +TKI   G F+    G++G
Sbjct: 254 INIDPETQKINLSLKH-MQEDPWTTFEHNFHVGD--VVKAPVTKITTFGAFIEIEPGIEG 310

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
            A  SEL        P  +  VG VV+ +I+      +R++L        P     +   
Sbjct: 311 LAHISELSWTKRVNNPKEVLDVGDVVEAKILGYDLDKKRVSLGLKQLESNPWDTIAERYP 370

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFD 725
              +L   VV +    A V         +G     H+ D    +    M S    G   D
Sbjct: 371 TGMTLSKPVVKITNSGAFV------NLEEGIDGFLHIDDISWTKKVKNMSSFCAEGDVID 424

Query: 726 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLG 783
            ++  ++ E+  + L  K    N  Q L     H +P  S + G + N+ + G FV+ LG
Sbjct: 425 VVVTRVEPENRRIRLGVKQLEGNPWQTL----RHDYPKFSTISGVITNVTDFGVFVKVLG 480

Query: 784 RLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            + G   +   V  D + +D + K Y VG  + + +++ N  T +++LS+K+    S
Sbjct: 481 DIEGLISKFNLVGPDEEFSDEVLKKYNVGDPITAMVVECNPTTQKLSLSIKEMVKRS 537



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 140/326 (42%), Gaps = 52/326 (15%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            GQ V G V +V+NE+  + +    + ++             EF     +G+ V   V+ I
Sbjct: 32   GQLVAGTVVQVNNEYVFVDVGYKSEGRI----------SRDEFTTIPEVGEQV--KVVII 79

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            NKE K  ++V+   +    ++T     D ++T       V G+  K++ G  G  V +G 
Sbjct: 80   NKEGKGGQIVVSKKRADFKERT-----DELKTAAEGRTPVMGKFEKVIKG--GFEVDLGG 132

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
               G    ++   I V DP +      +  +  +  G  +K  V               +
Sbjct: 133  EYKGFCPLSKADVIRVEDPETLIGISDYFIIDKFHGGTKLKSVV---------------N 177

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
             R  LD     N     + V        +I D     +V+G VK+ TS G FI L    D
Sbjct: 178  RREYLDQKIKENKEKFFSTV--------QIGD-----VVEGVVKSFTSFGAFIDLG-GFD 223

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
              + ++++S G+V  P+     G++V  R+++++P ++++ ++LK       +  E    
Sbjct: 224  GLLHINDMSWGHVTRPKDFVKKGQVVQLRLINIDPETQKINLSLKHMQEDPWTTFE---- 279

Query: 1464 SNLHVGDIVIGQIKRVESYGLFITIE 1489
             N HVGD+V   + ++ ++G FI IE
Sbjct: 280  HNFHVGDVVKAPVTKITTFGAFIEIE 305



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 128/323 (39%), Gaps = 32/323 (9%)

Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
           S V++GD+ +   VV+     G  +D+          + I+D++   V + +   K+G  
Sbjct: 195 STVQIGDVVE--GVVKSFTSFGAFIDLGGFD----GLLHINDMSWGHVTRPKDFVKKGQV 248

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
           V++R++            LK    +       +   G VVK  V  + +FGA ++   G+
Sbjct: 249 VQLRLINIDPETQKINLSLKHMQEDPWTTFEHNFHVGDVVKAPVTKITTFGAFIEIEPGI 308

Query: 523 KALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAI 576
           + L    H+SE    K    P +   VG  +  ++LG  +  KR+++  K+        I
Sbjct: 309 EGLA---HISELSWTKRVNNPKEVLDVGDVVEAKILGYDLDKKRVSLGLKQLESNPWDTI 365

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQV 635
              Y      +     + KI   G FV    G+ GF    ++      +  SS    G V
Sbjct: 366 AERYPTG---MTLSKPVVKITNSGAFVNLEEGIDGFLHIDDISWTKKVKNMSSFCAEGDV 422

Query: 636 VKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
           +   +    P +RRI L        P +    D  K  S +SGV+  VT   V V V+  
Sbjct: 423 IDVVVTRVEPENRRIRLGVKQLEGNPWQTLRHDYPKF-STISGVITNVTDFGVFVKVL-- 479

Query: 693 GYSKGTI-------PTEHLADHL 708
           G  +G I       P E  +D +
Sbjct: 480 GDIEGLISKFNLVGPDEEFSDEV 502


>gi|421766691|ref|ZP_16203460.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
 gi|407624717|gb|EKF51450.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
          Length = 407

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 161/367 (43%), Gaps = 42/367 (11%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFE------IVK 538
           FE L+ +  DVK   VVKG+++ +++  A V   G GV+ +  L  ++          VK
Sbjct: 4   FETLLNSVEDVKVRDVVKGEILTIENGQATVAIVGTGVEGVLTLREITNDRDADINTFVK 63

Query: 539 PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           PG    +   LV + +  K       +  +L + +     +  E  +  I    +TK  K
Sbjct: 64  PGDILDL---LVIKQIVGKDAEGANVYLLSLKRLEARKAWTELEGKEGEILTVKVTKDVK 120

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
            G  V  YNGV+GF P S   +D      +   VGQ ++ +I+    +  R    F++  
Sbjct: 121 GGLSVD-YNGVRGFIPASM--IDTYFVKDTKKFVGQEIEAKIIEINASENR----FILSR 173

Query: 659 TRVSEDDLVKL----------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             V E + +++          G +V G V  VT     V +   G   G +   H+++ L
Sbjct: 174 RAVVEAETIEMRKEAFAQLNEGDIVEGTVSRVTNFGAFVDL---GGIDGLV---HVSE-L 226

Query: 709 EHATVMK--SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
            H  V +   V+KPG + + ++L LD E+  L LS K +     +Q+   A      S V
Sbjct: 227 SHNRVKRPSDVVKPGDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPV---GSTV 283

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDVNSETG 824
            G V  + + G FV     + G    S+ +  +R +  K    VGQ V   +LDV  E  
Sbjct: 284 EGTVKRLTDFGAFVELFPGVEGLVHVSQ-ISWERVENPKDVLKVGQVVNVKVLDVKPEEE 342

Query: 825 RITLSLK 831
           RI+LS+K
Sbjct: 343 RISLSIK 349



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 39/255 (15%)

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G E +  ++  N S N  + ++ +++ +   ++  +A + ++   +V G V  +   G F
Sbjct: 152 GQEIEAKIIEINASENRFILSRRAVVEAETIEMRKEAFAQLNEGDIVEGTVSRVTNFGAF 211

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+    +    S     G  V   IL ++ E GR++LSLK +     
Sbjct: 212 VD-LGGIDGLVHVSELSHNRVKRPSDVVKPGDKVEVKILKLDEEAGRLSLSLKATQAGPW 270

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           +         +EEK                     +GS +EG V    DFG  V      
Sbjct: 271 EQ--------VEEKAP-------------------VGSTVEGTVKRLTDFGAFVEL--FP 301

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            V G +   Q++   VE+       G V+   +LDV   E  + LS+K +     R A +
Sbjct: 302 GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERISLSIKALEEAPARPARN 361

Query: 952 NRQAQKKKRKREASK 966
           N   +K+ RK  A +
Sbjct: 362 NDDGEKRDRKPRAPR 376



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 24/200 (12%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            +++A   E      + +  G +V+G V  V +FGA V   GG+  L  +  +S   + +
Sbjct: 175 AVVEAETIEMRKEAFAQLNEGDIVEGTVSRVTNFGAFVDL-GGIDGLVHVSELSHNRVKR 233

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITH 590
           P    K G ++  ++L +  ++ R++++ K T       V+ K  + S+           
Sbjct: 234 PSDVVKPGDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPVGST---------VE 284

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G + ++   G FV  + GV+G    S++  +    P  +  VGQVV  +++   P   RI
Sbjct: 285 GTVKRLTDFGAFVELFPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERI 344

Query: 651 NLSFM------MKPTRVSED 664
           +LS         +P R ++D
Sbjct: 345 SLSIKALEEAPARPARNNDD 364



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 40/252 (15%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G+ +   ++ IN  +    L  R     +  +T+++  +     ++EGDIV G +S++ 
Sbjct: 151  VGQEIEAKIIEINASENRFILSRRAV---VEAETIEMRKEAFAQ-LNEGDIVEGTVSRVT 206

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
            +   G  V +G  + G VH +EL +  V  P          P      G  V+ K+L++ 
Sbjct: 207  NF--GAFVDLG-GIDGLVHVSELSHNRVKRP-----SDVVKP------GDKVEVKILKLD 252

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVT 1390
                    + LSL+++  G                    E++E+ +P    V+G VK +T
Sbjct: 253  EE---AGRLSLSLKATQAG------------------PWEQVEEKAPVGSTVEGTVKRLT 291

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
              G F+ L   ++  V +S +S   VE+P+    +G++V  +VL V+P  +R+ +++K  
Sbjct: 292  DFGAFVELFPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERISLSIKAL 351

Query: 1451 DSRTASQSEINN 1462
            +   A  +  N+
Sbjct: 352  EEAPARPARNND 363



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E    L+   IV+G V  VT+ G F+ L   +D  V +S LS   V+ P      G  V 
Sbjct: 187  EAFAQLNEGDIVEGTVSRVTNFGAFVDLG-GIDGLVHVSELSHNRVKRPSDVVKPGDKVE 245

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             ++L ++  + R+ ++LK + +    Q E        VG  V G +KR+  +G F+ +
Sbjct: 246  VKILKLDEEAGRLSLSLKATQAGPWEQVE----EKAPVGSTVEGTVKRLTDFGAFVEL 299


>gi|390629414|ref|ZP_10257409.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
 gi|390485318|emb|CCF29757.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
          Length = 410

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 117/254 (46%), Gaps = 18/254 (7%)

Query: 407 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           V DI  ++ V +V +G GL++D+       PA    S +    V+ L  +YK G  +R +
Sbjct: 112 VDDIV-EAPVTQVVKG-GLVVDVEGVRGFVPA----SMIENRFVQDL-NQYK-GQTIRAK 163

Query: 467 ILGFRHLEGLAT----GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
           I+     +         +L     E L    +++  G VV+GKV  + +FGA +   GGV
Sbjct: 164 IIEINAADSRLILSRRDVLNEERSEALSRVFNELSVGDVVEGKVARMTNFGAFIDL-GGV 222

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSY 580
             L  +  +S   + +P     VG E+  +VLG+  + +RI+++ K T      A  +  
Sbjct: 223 DGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKATQPGPWEAAAAEA 282

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
            E T   +  G + ++   G FV  + GV+G    S++       PS +   G  VK ++
Sbjct: 283 PEGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKV 339

Query: 641 MSSIPASRRINLSF 654
           +   P  +R++LS 
Sbjct: 340 LEVNPDKQRLSLSI 353



 Score = 43.9 bits (102), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 37/228 (16%)

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
            DIV   +++++ G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQVVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1380
            Q ++ K++EI+        + LS R  L+   S   S +               +LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRRDVLNEERSEALSRV-------------FNELSVGD 201

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VVEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEK 260

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ +++K     T         +    G ++ G +KRV  +G F+ +
Sbjct: 261  ERISLSIKA----TQPGPWEAAAAEAPEGTVLEGTVKRVVDFGAFVEV 304



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 30/230 (13%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHAT-VMKSVIKPGYEF 724
           VK+G +V G V  +     V+  I     +G IP   L AD   +   ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVV 77

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              +  D E  + LLS +   + + +     AS  + + +V   V  +++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEG- 134

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              L EE+   L    +  S         +G V+EGKV    +FG  +  
Sbjct: 181 --VLNEERSEALSRVFNELS---------VGDVVEGKVARMTNFGAFIDL 219


>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
          Length = 410

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 18/254 (7%)

Query: 407 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           V DI  ++ V +V +G GL++D+       PA    S +    V+ L  +YK G  +R +
Sbjct: 112 VDDIV-EAPVTQVVKG-GLVVDVEGVRGFVPA----SMIENRFVQDL-NQYK-GQTIRAK 163

Query: 467 ILGFRHLEGLAT----GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
           I+     +         +L       L    +++  G VV+GKV  + +FGA +   GGV
Sbjct: 164 IIEINAADSRLILSRRDVLNEERSAALARVFNELSVGDVVEGKVARMTNFGAFIDL-GGV 222

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSY 580
             L  +  +S   + +P     VG ++  +VLG+  + +RI+++ K T      A  S  
Sbjct: 223 DGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWEAAASEA 282

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
            E T   +  G + ++   G FV  + GV+G    S++       PS +   G  VK ++
Sbjct: 283 PEGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKV 339

Query: 641 MSSIPASRRINLSF 654
           +   P  +R++LS 
Sbjct: 340 LEVNPDKQRLSLSI 353



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 41/230 (17%)

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
            DIV   +++++ G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQVVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1380
            Q ++ K++EI+        + LS R   D ++   S+ L+              +LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRR---DVLNEERSAALA----------RVFNELSVGD 201

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VVEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEK 260

Query: 1441 KRVEVTLKTSDS--RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ +++K +      A+ SE         G ++ G +KRV  +G F+ +
Sbjct: 261  ERISLSIKATQPGPWEAAASEAPE------GTVLEGTVKRVVDFGAFVEV 304



 Score = 43.5 bits (101), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 30/230 (13%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHAT-VMKSVIKPGYEF 724
           VK+G +V G V  +     V+  I     +G IP   L AD   +   ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVV 77

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              +  D E  + LLS +   + + +     AS  + + +V   V  +++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEG- 134

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              L EE+ A L          +      +G V+EGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RVFNELSVGDVVEGKVARMTNFGAFIDL 219



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 149/356 (41%), Gaps = 35/356 (9%)

Query: 494 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           ++VK G VVKG+V+A+D +   IV   G GV+ + P+  ++        +   V   +  
Sbjct: 16  AEVKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELT------ADRDANVNDLVKV 69

Query: 552 RVLGVKSKRITVTHKKT-----LVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCF 602
             +       T+   K      L K +L    ++ E   +     I    +T++ K G  
Sbjct: 70  GDVLDLVVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLV 129

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTR 660
           V    GV+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R
Sbjct: 130 VDV-EGVRGFVPASMIE-NRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRRDVLNEER 186

Query: 661 VSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
            +    V     +G +V G V  +T     + +   G   G +    ++   E  +    
Sbjct: 187 SAALARVFNELSVGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSD 241

Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           V+  G +   ++L LD E   + LS K +     +   S+A      +V+ G V  +++ 
Sbjct: 242 VLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWEAAASEAPE---GTVLEGTVKRVVDF 298

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G FV     + G    S+      A+ S     G  V+  +L+VN +  R++LS+K
Sbjct: 299 GAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIK 354


>gi|347521866|ref|YP_004779437.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
 gi|385833250|ref|YP_005871025.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
 gi|420143919|ref|ZP_14651407.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
 gi|343180434|dbj|BAK58773.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
 gi|343182403|dbj|BAK60741.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
 gi|391855371|gb|EIT65920.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
          Length = 407

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 161/367 (43%), Gaps = 42/367 (11%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFE------IVK 538
           FE L+ +  DVK   VVKG+++ +++  A V   G GV+ +  L  ++          VK
Sbjct: 4   FETLLNSVEDVKVRDVVKGEILTIENGQATVAIVGTGVEGVLTLREITNDRDADINTFVK 63

Query: 539 PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           PG    +   LV + +  K       +  +L + +     +  E  +  I    +TK  K
Sbjct: 64  PGDILDL---LVIKQIVGKDAEGANVYLLSLKRLEARKAWTELEGKEGEILTVKVTKDVK 120

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
            G  V  YNGV+GF P S   +D      +   VGQ ++ +I+    +  R    F++  
Sbjct: 121 GGLSVD-YNGVRGFIPASM--IDTYFVKDTKKFVGQEIEAKIIEINASENR----FILSR 173

Query: 659 TRVSEDDLVKL----------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             V E + +++          G +V G V  VT     V +   G   G +   H+++ L
Sbjct: 174 RAVVEAETIEMRKEAFAQLNEGDIVEGTVSRVTNFGAFVDL---GGIDGLV---HVSE-L 226

Query: 709 EHATVMK--SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
            H  V +   V+KPG + + ++L LD E+  L LS K +     +Q+   A      S V
Sbjct: 227 SHNRVKRPSDVVKPGDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPV---GSTV 283

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDVNSETG 824
            G V  + + G FV     + G    S+ +  +R +  K    VGQ V   +LDV  E  
Sbjct: 284 EGTVKRLTDFGAFVELFPGVEGLVHVSQ-ISWERVENPKDVLKVGQVVNVKVLDVKPEEE 342

Query: 825 RITLSLK 831
           RI+LS+K
Sbjct: 343 RISLSIK 349



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 39/255 (15%)

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G E +  ++  N S N  + ++ +++ +   ++  +A + ++   +V G V  +   G F
Sbjct: 152 GQEIEAKIIEINASENRFILSRRAVVEAETIEMRKEAFAQLNEGDIVEGTVSRVTNFGAF 211

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+    +    S     G  V   IL ++ E GR++LSLK +     
Sbjct: 212 VD-LGGIDGLVHVSELSHNRVKRPSDVVKPGDKVEVKILKLDEEAGRLSLSLKATQAGPW 270

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           +         +EEK                     +GS +EG V    DFG  V      
Sbjct: 271 EQ--------VEEKAP-------------------VGSTVEGTVKRLTDFGAFVEL--FP 301

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            V G +   Q++   VE+       G V+   +LDV   E  + LS+K +     R A +
Sbjct: 302 GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERISLSIKALEEAPARPARN 361

Query: 952 NRQAQKKKRKREASK 966
           N   +K+ RK  A +
Sbjct: 362 NEDGEKRDRKPRAPR 376



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 24/200 (12%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            +++A   E      + +  G +V+G V  V +FGA V   GG+  L  +  +S   + +
Sbjct: 175 AVVEAETIEMRKEAFAQLNEGDIVEGTVSRVTNFGAFVDL-GGIDGLVHVSELSHNRVKR 233

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITH 590
           P    K G ++  ++L +  ++ R++++ K T       V+ K  + S+           
Sbjct: 234 PSDVVKPGDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPVGST---------VE 284

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G + ++   G FV  + GV+G    S++  +    P  +  VGQVV  +++   P   RI
Sbjct: 285 GTVKRLTDFGAFVELFPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERI 344

Query: 651 NLSFM------MKPTRVSED 664
           +LS         +P R +ED
Sbjct: 345 SLSIKALEEAPARPARNNED 364



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 114/251 (45%), Gaps = 40/251 (15%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G+ +   ++ IN  +    L  R     +  +T+++  +     ++EGDIV G +S++ 
Sbjct: 151  VGQEIEAKIIEINASENRFILSRRAV---VEAETIEMRKEAFAQ-LNEGDIVEGTVSRVT 206

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
            +   G  V +G  + G VH +EL +  V  P          P      G  V+ K+L++ 
Sbjct: 207  NF--GAFVDLG-GIDGLVHVSELSHNRVKRP-----SDVVKP------GDKVEVKILKLD 252

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVT 1390
                    + LSL+++  G                    E++E+ +P    V+G VK +T
Sbjct: 253  EE---AGRLSLSLKATQAG------------------PWEQVEEKAPVGSTVEGTVKRLT 291

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
              G F+ L   ++  V +S +S   VE+P+    +G++V  +VL V+P  +R+ +++K  
Sbjct: 292  DFGAFVELFPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERISLSIKAL 351

Query: 1451 DSRTASQSEIN 1461
            +   A  +  N
Sbjct: 352  EEAPARPARNN 362



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E    L+   IV+G V  VT+ G F+ L   +D  V +S LS   V+ P      G  V 
Sbjct: 187  EAFAQLNEGDIVEGTVSRVTNFGAFVDLG-GIDGLVHVSELSHNRVKRPSDVVKPGDKVE 245

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             ++L ++  + R+ ++LK + +    Q E        VG  V G +KR+  +G F+ +
Sbjct: 246  VKILKLDEEAGRLSLSLKATQAGPWEQVE----EKAPVGSTVEGTVKRLTDFGAFVEL 299


>gi|421484149|ref|ZP_15931721.1| 30S ribosomal protein S1 [Achromobacter piechaudii HLE]
 gi|400197856|gb|EJO30820.1| 30S ribosomal protein S1 [Achromobacter piechaudii HLE]
          Length = 570

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 152/355 (42%), Gaps = 34/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 201 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 259

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 260 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 316

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 317 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 374

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     T  ++V   K G E + +++
Sbjct: 375 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAVVL 429

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D +   + L  K        QL  D      +     +VV G + ++   G  V    
Sbjct: 430 GIDTDKERISLGIK--------QLEGDPFNNFVATFDKGAVVPGTIKSVEAKGAVVTLSV 481

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + G+   S+   G+  D +     G+++ + I++++ +T  I LS+K    + T
Sbjct: 482 DVEGYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQLSIKARDNAET 536



 Score = 47.8 bits (112), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 83/179 (46%), Gaps = 6/179 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFR 552
           ++ K G  V+G + ++  FG  V  PGG+  L  L  +S  E  +   + FK G E+   
Sbjct: 368 TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAV 427

Query: 553 VLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VLG+ +  +RI++  K+         ++++ +     +  G I  +E  G  V     V+
Sbjct: 428 VLGIDTDKERISLGIKQLEGDPFNNFVATFDKGA---VVPGTIKSVEAKGAVVTLSVDVE 484

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
           G+   SE+      + +++ + G+ ++  I++    +R I LS   +    + D + ++
Sbjct: 485 GYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQLSIKARDNAETADTIQRM 543



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 60/332 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 201  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 253

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 254  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 303

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 304  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 349

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 350  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 393

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + E+ E   + F  G  +   VL ++   +R+ + +K  +    +
Sbjct: 394  GGIDGLVHLSDLS--WTETGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFN 451

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                N ++    G +V G IK VE+ G  +T+
Sbjct: 452  ----NFVATFDKGAVVPGTIKSVEAKGAVVTL 479



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 162 EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 219

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ
Sbjct: 220 LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ 270


>gi|423016382|ref|ZP_17007103.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans AXX-A]
 gi|338780636|gb|EGP45041.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans AXX-A]
          Length = 570

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 152/355 (42%), Gaps = 34/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 201 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 259

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 260 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 316

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 317 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 374

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     T  ++V   K G E + +++
Sbjct: 375 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAVVL 429

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D +   + L  K        QL  D      +     +VV G + ++   G  V    
Sbjct: 430 GIDTDKERISLGIK--------QLEGDPFNNFVATFDKGAVVPGTIKSVEAKGAVVTLSV 481

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + G+   S+   G+  D +     G+++ + I++++ +T  I LS+K    + T
Sbjct: 482 DVEGYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQLSIKARDNAET 536



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 131/302 (43%), Gaps = 39/302 (12%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V A++L  D     V L +     +P++   R  P       KV ++ D    V V+ 
Sbjct: 248 QEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEA 307

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ +  E  V ++++        R RI LG +    
Sbjct: 308 GIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDED-------RRRISLGMKQC-- 358

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + + +E      ++ K G  V+G + ++  FG  V  PGG+  L  L  +S  E
Sbjct: 359 ------RQNPWEEFA---TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTE 409

Query: 536 IVKPG-KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
             +   + FK G E+   VLG+ +  +RI++  K+         ++++ +     +  G 
Sbjct: 410 TGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFNNFVATFDKGA---VVPGT 466

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           I  +E  G  V     V+G+   SE+      + +++ + G+ ++  I++    +R I L
Sbjct: 467 IKSVEAKGAVVTLSVDVEGYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQL 526

Query: 653 SF 654
           S 
Sbjct: 527 SI 528



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 60/332 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 201  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 253

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 254  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 303

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 304  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 349

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 350  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 393

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + E+ E   + F  G  +   VL ++   +R+ + +K  +    +
Sbjct: 394  GGIDGLVHLSDLS--WTETGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFN 451

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                N ++    G +V G IK VE+ G  +T+
Sbjct: 452  ----NFVATFDKGAVVPGTIKSVEAKGAVVTL 479



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 162 EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 219

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ
Sbjct: 220 LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ 270


>gi|311104916|ref|YP_003977769.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans A8]
 gi|310759605|gb|ADP15054.1| ribosomal protein S1 [Achromobacter xylosoxidans A8]
          Length = 576

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 152/355 (42%), Gaps = 34/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 207 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 265

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 266 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 322

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 323 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 380

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     T  ++V   K G E + +++
Sbjct: 381 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAVVL 435

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D +   + L  K        QL  D      +     +VV G + ++   G  V    
Sbjct: 436 GIDTDKERISLGIK--------QLEGDPFNNFVATFDKGAVVPGTIKSVEAKGAVVTLSV 487

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + G+   S+   G+  D +     G+++ + I++++ +T  I LS+K    + T
Sbjct: 488 DVEGYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQLSIKARDNAET 542



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 131/302 (43%), Gaps = 39/302 (12%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V A++L  D     V L +     +P++   R  P       KV ++ D    V V+ 
Sbjct: 254 QEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEA 313

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ +  E  V ++++        R RI LG +    
Sbjct: 314 GIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDED-------RRRISLGMKQC-- 364

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + + +E      ++ K G  V+G + ++  FG  V  PGG+  L  L  +S  E
Sbjct: 365 ------RQNPWEEFA---TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTE 415

Query: 536 IVKPG-KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
             +   + FK G E+   VLG+ +  +RI++  K+         ++++ +     +  G 
Sbjct: 416 TGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFNNFVATFDKGA---VVPGT 472

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           I  +E  G  V     V+G+   SE+      + +++ + G+ ++  I++    +R I L
Sbjct: 473 IKSVEAKGAVVTLSVDVEGYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQL 532

Query: 653 SF 654
           S 
Sbjct: 533 SI 534



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 60/332 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 207  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 259

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 260  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 309

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 310  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 355

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 356  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 399

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + E+ E   + F  G  +   VL ++   +R+ + +K  +    +
Sbjct: 400  GGIDGLVHLSDLS--WTETGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFN 457

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                N ++    G +V G IK VE+ G  +T+
Sbjct: 458  ----NFVATFDKGAVVPGTIKSVEAKGAVVTL 485



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 168 EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 225

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ
Sbjct: 226 LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ 276


>gi|293604177|ref|ZP_06686585.1| 30S ribosomal protein S1 [Achromobacter piechaudii ATCC 43553]
 gi|422322114|ref|ZP_16403156.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans C54]
 gi|292817402|gb|EFF76475.1| 30S ribosomal protein S1 [Achromobacter piechaudii ATCC 43553]
 gi|317402985|gb|EFV83524.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans C54]
          Length = 575

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 152/355 (42%), Gaps = 34/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 206 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 264

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 265 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 321

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 322 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 379

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     T  ++V   K G E + +++
Sbjct: 380 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAVVL 434

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D +   + L  K        QL  D      +     +VV G + ++   G  V    
Sbjct: 435 GIDTDKERISLGIK--------QLEGDPFNNFVATFDKGAVVPGTIKSVEAKGAVVTLSV 486

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + G+   S+   G+  D +     G+++ + I++++ +T  I LS+K    + T
Sbjct: 487 DVEGYLRASEISSGRVEDATTVLTAGENIEAMIVNIDRKTRSIQLSIKARDNAET 541



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFR 552
           ++ K G  V+G + ++  FG  V  PGG+  L  L  +S  E  +   + FK G E+   
Sbjct: 373 TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAV 432

Query: 553 VLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VLG+ +  +RI++  K+         ++++ +     +  G I  +E  G  V     V+
Sbjct: 433 VLGIDTDKERISLGIKQLEGDPFNNFVATFDKGA---VVPGTIKSVEAKGAVVTLSVDVE 489

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           G+   SE+      + +++   G+ ++  I++    +R I LS 
Sbjct: 490 GYLRASEISSGRVEDATTVLTAGENIEAMIVNIDRKTRSIQLSI 533



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 60/332 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 206  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 258

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 259  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 308

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 309  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 354

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 355  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 398

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + E+ E   + F  G  +   VL ++   +R+ + +K  +    +
Sbjct: 399  GGIDGLVHLSDLS--WTETGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFN 456

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                N ++    G +V G IK VE+ G  +T+
Sbjct: 457  ----NFVATFDKGAVVPGTIKSVEAKGAVVTL 484



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 167 EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 224

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ
Sbjct: 225 LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ 275


>gi|193213386|ref|YP_001999339.1| 30S ribosomal protein S1 [Chlorobaculum parvum NCIB 8327]
 gi|193086863|gb|ACF12139.1| RNA binding S1 domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 583

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 150/354 (42%), Gaps = 40/354 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +  ++   +   V
Sbjct: 211 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVV 269

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYA---EATDRLITHGWITKIEKHGCFVRFYNG 608
           +G    +KR+++  K+        I   Y    +AT R+++      I  +G FV    G
Sbjct: 270 VGFDENTKRVSLGMKQLEAHPWENIEIKYPVGIKATGRVVS------ITDYGAFVEIEKG 323

Query: 609 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           ++G    SE+      + PS    + Q V+  I++      +++LS      RV ED  +
Sbjct: 324 IEGLVHISEMSWTQHIKHPSQFVSLNQDVEVVILNIDKEHTKLSLSM----KRVMEDPWI 379

Query: 668 KL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKS 716
            L      GSL  G V  +T   V V +       G     H++D      + H +    
Sbjct: 380 ALSEKYIEGSLHKGTVSNITDFGVFVEL-----EPGVDGLVHISDLSWTKKIRHPS---E 431

Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           ++K G E + ++L  D  +  + L  K   IN+      +  +    +   G +  IIE 
Sbjct: 432 LVKKGQELEVKVLKFDVNARRIALGHKQ--INNDPWGEFEQKYA-VGAECTGAISQIIEK 488

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           G  V   G + GF P S  + G   D+  ++ VG  +   +++ + E  RI LS
Sbjct: 489 GVIVLLPGEVDGFVPVSHLLQGGVKDIHSSFKVGDELPLRVIEFDKENKRIILS 542



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             K  E + ++   M+++G VKN+T  G F+ L   LD  V +++++ G +  P +   + 
Sbjct: 204  AKREEMLANIKVGMVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVELD 262

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + +   V+  +  +KRV + +K  ++      EI       VG    G++  +  YG F+
Sbjct: 263  QPIKVVVVGFDENTKRVSLGMKQLEAHPWENIEI----KYPVGIKATGRVVSITDYGAFV 318

Query: 1487 TIE 1489
             IE
Sbjct: 319  EIE 321


>gi|383780632|ref|YP_005465198.1| putative transcription accessory protein [Actinoplanes missouriensis
            431]
 gi|381373864|dbj|BAL90682.1| putative transcription accessory protein [Actinoplanes missouriensis
            431]
          Length = 809

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 51/82 (62%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            +EKI DLSP MI++G V NV + G F+ +    D  V +S LSD +V+ P +    G +V
Sbjct: 639  VEKIADLSPGMILEGQVTNVAAFGAFVDIGVHQDGLVHVSALSDKFVQDPREVVKSGDVV 698

Query: 1430 AGRVLSVEPLSKRVEVTLKTSD 1451
              RVL V+P+ KR+ ++++  D
Sbjct: 699  KVRVLEVDPVRKRISLSMRLQD 720


>gi|239636851|ref|ZP_04677850.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
 gi|239597525|gb|EEQ80023.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
          Length = 392

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 26/261 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           ++KV  V +G GL++D+      P++ +ST      SD   + ++ K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDFEGQTIKIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E     + KAS  + L         G V++GKV  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENEVKKASLLDSL-------NAGDVIEGKVARLTNFGAFVDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG ++  +V  V+  ++RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHQHVQSPEEVVFVGDKVNVKVKSVEKDTERISLSIKDTLPTPFAQIKGQFHEN 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV    GVQG    SE+       P  +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGI 336

Query: 644 IPASRRINLSFMMKPTRVSED 664
              + R++LS  +K T  +ED
Sbjct: 337 DEENERVSLS--IKATLPNED 355



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I KP +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S +  GQ +K ++    P + R+ LS   K    +E+++ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQTIKIKVEELDPENNRVILS--RKAVEQAENEVKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     V +   G   G +    L+   +H    + V+  
Sbjct: 185 ASLLDSLNAGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--QHVQSPEEVVFV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G + + ++  ++ ++  + LS K +L     Q+       H N V+ G V  +   G FV
Sbjct: 240 GDKVNVKVKSVEKDTERISLSIKDTLPTPFAQI---KGQFHENDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+          +    GQ V   IL ++ E  R++LS+K +  +   
Sbjct: 297 EIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 VESDASTTQSYL 368



 Score = 47.0 bits (110), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE+   +G  V  +
Sbjct: 188  LDSLNAGDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHQHVQSPEEVVFVGDKVNVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  ++R+ +++K  D+     ++I      H  D++ G + R+ ++G F+ I
Sbjct: 247  VKSVEKDTERISLSIK--DTLPTPFAQIK--GQFHENDVIEGTVVRLANFGAFVEI 298


>gi|56460463|ref|YP_155744.1| 30S ribosomal protein S1 [Idiomarina loihiensis L2TR]
 gi|56179473|gb|AAV82195.1| Ribosomal protein S1 [Idiomarina loihiensis L2TR]
          Length = 560

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 32/351 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  V+G V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQEVQGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246

Query: 555 GVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               +R  V+   K L +   A +++      RL   G +T +  +GCFV    GV+G  
Sbjct: 247 KFDRERTRVSLGLKQLGEDPWADIANRYPEGHRLT--GRVTNLTDYGCFVEIEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 668
             SE+   +    PS + ++   V+  ++      RRI+L     KP    E    K   
Sbjct: 305 HVSEMDWTNKNVHPSKVVNLDDTVEVMVLEIDEERRRISLGLKQCKPNPWEE--FAKNHN 362

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  V+G +  +T   + +     G   G     HL+D   +AT  ++V   K G E   
Sbjct: 363 KGEQVTGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNATGEEAVRDYKKGEEVTA 417

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVR 780
           +++ +D E   + L  K        QL  D   +++  N   ++V G V  +   G  V 
Sbjct: 418 VVMQVDAERERISLGIK--------QLEEDPFNNYLAANKKGAIVTGTVTEVDAKGAKVE 469

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G+   +     +  D S    VG S+ +  + V+ +   ++LS++
Sbjct: 470 LAESVEGYVRAADISRDRVEDASTELSVGDSIEARFMGVDRKNRTLSLSIR 520



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 141/368 (38%), Gaps = 36/368 (9%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGQEVQGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            V   DR R  V L        K + +D      +    G  ++ RV ++ + G  +   
Sbjct: 244 KVLKFDRERTRVSLG------LKQLGEDPWADIANRYPEGHRLTGRVTNLTDYGCFVEIE 297

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLL- 396
               G V +  +  T    +     N    V   +L +D   R + L L     NP+   
Sbjct: 298 EGVEGLVHVSEMDWTNKNVHPSKVVNLDDTVEVMVLEIDEERRRISLGLKQCKPNPWEEF 357

Query: 397 ---HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
              HN+      K+  I D    + +D G+  L+ +          ++ +   EE VR  
Sbjct: 358 AKNHNKGEQVTGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNATGEEAVRDY 409

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
            KK +E + V +++   R    L    L+   F   +  +   K G +V G V  VD+ G
Sbjct: 410 -KKGEEVTAVVMQVDAERERISLGIKQLEEDPFNNYLAAN---KKGAIVTGTVTEVDAKG 465

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT---HKKTLV 570
           A V+    V+       +S   +     +  VG  +  R +GV  K  T++     K  V
Sbjct: 466 AKVELAESVEGYVRAADISRDRVEDASTELSVGDSIEARFMGVDRKNRTLSLSIRAKDEV 525

Query: 571 KSKLAILS 578
           + K A+ S
Sbjct: 526 EEKEAVES 533


>gi|334344298|ref|YP_004552850.1| 30S ribosomal protein S1 [Sphingobium chlorophenolicum L-1]
 gi|334100920|gb|AEG48344.1| ribosomal protein S1 [Sphingobium chlorophenolicum L-1]
          Length = 570

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 178/436 (40%), Gaps = 60/436 (13%)

Query: 419 VDRGLGLLLDIPSTPVSTP---AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           +D GL     +P    + P   A + + D  E  V ++E  + E    R R       + 
Sbjct: 46  IDVGLKSEGRVPLREFAAPGQKADLKVGDEVEVYVDRVENAHGEAMLSRDRARREAAWDK 105

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF- 534
           L +   + +  EG++F    VK G  V       D  GA+   PG    + P+  ++   
Sbjct: 106 LESEFTENARVEGVIFGR--VKGGFTV-------DLDGAVAFLPGSQVDIRPVRDVTPLM 156

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHK----KTLVKSKLAILSSYAEATDRLI 588
           +I +P           F++L +  +R  I V+ +    +T  + +  ++ + AE     I
Sbjct: 157 DIPQP-----------FQILKMDRRRGNIVVSRRAILEETRAEQRSGLIQTLAEGQ---I 202

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G +  I  +G FV    G+ G    ++L       P+ M ++G  V+ +I+     ++
Sbjct: 203 IEGVVKNITDYGAFVDL-GGIDGLLHVTDLSYKRINHPNEMINIGDTVRVQIIRINRDTQ 261

Query: 649 RINLSFMMKPTRVSEDDLVK--LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
           RI+L      +   E    K  +G+ +SG V  +T     V + A          E L  
Sbjct: 262 RISLGMKQLESDPWEGAAAKYPVGAKLSGRVTNITEYGAFVELEAG--------IEGLV- 312

Query: 707 HLEHATVMKSVIKPG------YEFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSDA-SH 758
           H+   +  K  + PG       E D + L +D E   + L  K      AQ  P D+ + 
Sbjct: 313 HVSEMSWTKKNVHPGKIVSTSQEVDVIVLEVDPEKRRISLGLK-----QAQNNPWDSFAE 367

Query: 759 IHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNI 816
            HP  S V G V N  E G F+   G + G    S    G    D    +  G++V++ +
Sbjct: 368 RHPIGSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWGISGEDALALHRKGETVQAVV 427

Query: 817 LDVNSETGRITLSLKQ 832
           LD++ E  RI+L +KQ
Sbjct: 428 LDIDVEKERISLGMKQ 443



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 187/472 (39%), Gaps = 85/472 (18%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGV 556
           G VVKG V  +++  A++    G+K+   +P + EF    PG+K   KVG E+   V  V
Sbjct: 29  GRVVKGTVTGIENDMALIDV--GLKSEGRVP-LREF--AAPGQKADLKVGDEVEVYVDRV 83

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           ++        +   + + A     +E T+     G I    K G F    +G   F P S
Sbjct: 84  ENAHGEAMLSRDRARREAAWDKLESEFTENARVEGVIFGRVK-GGFTVDLDGAVAFLPGS 142

Query: 617 ELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
           ++ + P  + + +  + Q  +     R   +I  SRR  L       R      +  G +
Sbjct: 143 QVDIRPVRDVTPLMDIPQPFQILKMDRRRGNIVVSRRAILEETRAEQRSGLIQTLAEGQI 202

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--KSVIKPGYEFD----- 725
           + GVV  +T     V +       G I      D L H T +  K +  P    +     
Sbjct: 203 IEGVVKNITDYGAFVDL-------GGI------DGLLHVTDLSYKRINHPNEMINIGDTV 249

Query: 726 --QLLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHP-NSVVHGYVCNIIETGCF 778
             Q++ ++ ++  + L  K        QL SD    A+  +P  + + G V NI E G F
Sbjct: 250 RVQIIRINRDTQRISLGMK--------QLESDPWEGAAAKYPVGAKLSGRVTNITEYGAF 301

Query: 779 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           V     + G    S+ +   +     K     Q V   +L+V+ E  RI+L LKQ+  + 
Sbjct: 302 VELEAGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVIVLEVDPEKRRISLGLKQAQNNP 361

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D SF + H                           IGS +EG+V  + +FG+ +  +  
Sbjct: 362 WD-SFAERH--------------------------PIGSTVEGEVKNATEFGLFIGLD-- 392

Query: 898 SDVYGFITHHQLA-GATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
            DV G +    +A G + E        G  +QA +LD+   +  + L +K +
Sbjct: 393 GDVDGMVHMSDIAWGISGEDALALHRKGETVQAVVLDIDVEKERISLGMKQL 444



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            I+ L+   I++G VKN+T  G F+ L   +D  + +++LS   +  P +   IG  V  +
Sbjct: 194  IQTLAEGQIIEGVVKNITDYGAFVDLG-GIDGLLHVTDLSYKRINHPNEMINIGDTVRVQ 252

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            ++ +   ++R+ + +K  +S     +     +   VG  + G++  +  YG F+ +E
Sbjct: 253  IIRINRDTQRISLGMKQLESDPWEGA----AAKYPVGAKLSGRVTNITEYGAFVELE 305


>gi|152996867|ref|YP_001341702.1| 30S ribosomal protein S1 [Marinomonas sp. MWYL1]
 gi|150837791|gb|ABR71767.1| ribosomal protein S1 [Marinomonas sp. MWYL1]
          Length = 560

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 144/363 (39%), Gaps = 32/363 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G  VKG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +V
Sbjct: 187 ASLEEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIIAVGDEIDVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      +AI + Y E T        +T +  +GCF     GV+G
Sbjct: 246 LKFDRERNRVSLGLKQLGEDPWVAIKARYPENTK---VTAKVTNLTDYGCFAELEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    PS +  +G  V+  ++      RRI+L      M P         
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVQIGDEVEVMVLDIDEERRRISLGIKQCTMNPWEEFATSFN 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  +SG +  +T   V +     G   G     HL+D     T  ++V   K G   +
Sbjct: 363 K-GDKISGAIKSITDFGVFI-----GLDGGIDGLVHLSDLSWDETGEEAVRQYKKGDMLE 416

Query: 726 QL-LVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFV 779
            + L +D E   + L  K        QL  D      +     ++V+G V  +   G  V
Sbjct: 417 TVVLSIDAERERISLGVK--------QLEEDPFLAFVAENDKGTIVNGTVSEVDAKGAVV 468

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                +      S+    +  D +     G  V + I++V+ +   ITLS+KQ   +   
Sbjct: 469 VLAEGVEATLKVSEISRERIEDATTALKEGDKVEAAIINVDRKARTITLSIKQKDATEEK 528

Query: 840 ASF 842
           A+ 
Sbjct: 529 AAL 531



 Score = 43.9 bits (102), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 146/386 (37%), Gaps = 65/386 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL------------PRNNLAENSGIDV 274
           L +++EG  +   VK++ D+G  +  G     G L            P   +A    IDV
Sbjct: 186 LASLEEGQEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIIAVGDEIDV 243

Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
           K        V   DR R  V      L  DP             ++I    P    V+ +
Sbjct: 244 K--------VLKFDRERNRVSLGLKQLGEDP------------WVAIKARYPENTKVTAK 283

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
           V ++ + G          G V +  +  T    +         +V   +L +D   R + 
Sbjct: 284 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQIGDEVEVMVLDIDEERRRIS 343

Query: 389 L-----TLNPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           L     T+NP+       N+       +  I D    + +D G+  L+ +          
Sbjct: 344 LGIKQCTMNPWEEFATSFNKGDKISGAIKSITDFGVFIGLDGGIDGLVHLSD-------- 395

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKP 498
           ++  +  EE VR+    YK+G  +   +L      E ++ G+ +      L F   + K 
Sbjct: 396 LSWDETGEEAVRQ----YKKGDMLETVVLSIDAERERISLGVKQLEEDPFLAFVAENDK- 450

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  VD+ GA+V    GV+A   +  +S   I       K G ++   ++ V  
Sbjct: 451 GTIVNGTVSEVDAKGAVVVLAEGVEATLKVSEISRERIEDATTALKEGDKVEAAIINVDR 510

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAE 582
           K++ IT++ K+     + A L S++E
Sbjct: 511 KARTITLSIKQKDATEEKAALKSHSE 536



 Score = 43.5 bits (101), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 147/371 (39%), Gaps = 41/371 (11%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP----LPHMSEFEIVK 538
           A  FE  + T  ++ PG +V G V+ +DS    V      + + P    L    EF +  
Sbjct: 6   AELFEESLLT-VEMAPGSIVTGIVVDIDSEWVTVHAGLKSEGVIPRSQFLTDSGEFNL-N 63

Query: 539 PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            G + KV  + V    G       ++ +K       ++L    E  +  I HG I    K
Sbjct: 64  IGDEVKVALDAVEDGFG----ETKLSREKAKRAETWSVLEKAYE--ENAIVHGVINGKVK 117

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSF 654
            G  V   N ++ F P S + + P  + S +  V    K     +  +++  SRR  +  
Sbjct: 118 GGFTVDIAN-IRAFLPGSLVDVRPIRDTSHLEGVDLEFKLIKLDQKRNNVVVSRRAVMEA 176

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATV 713
                R +    ++ G  V G+V  +T     V +   G   G +    +A   ++H + 
Sbjct: 177 TNSAERETLLASLEEGQEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRIKHPS- 232

Query: 714 MKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHG 767
              +I  G E D ++L  D E + + L  K        QL  D      +    N+ V  
Sbjct: 233 --EIIAVGDEIDVKVLKFDRERNRVSLGLK--------QLGEDPWVAIKARYPENTKVTA 282

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGR 825
            V N+ + GCF      + G    S+ +D    ++  SK   +G  V   +LD++ E  R
Sbjct: 283 KVTNLTDYGCFAELEEGVEGLVHVSE-MDWTNKNIHPSKVVQIGDEVEVMVLDIDEERRR 341

Query: 826 ITLSLKQSCCS 836
           I+L +KQ   +
Sbjct: 342 ISLGIKQCTMN 352


>gi|449974786|ref|ZP_21815454.1| 30S ribosomal protein S1 [Streptococcus mutans 11VS1]
 gi|449177840|gb|EMB80125.1| 30S ribosomal protein S1 [Streptococcus mutans 11VS1]
          Length = 399

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +V+ VD   A +   G GV+A+  L  ++        + VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         D +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREDDVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA------SRRIN 651
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    P+      SRR  
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQQFEAKIKEIDPSENRFILSRRDV 175

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           +       R      + +G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEAAAAKAREEVFSRLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHITELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SRLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHITELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +  +R  +  SN   RQ++ +++KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALE-ERPAQDESNGEKRQSRPRRQKRQDKRDYELPET 384



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D+
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQDE 358



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHITELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTASQSEIN 1461
             +RV +++K  + R A Q E N
Sbjct: 340  DERVSLSIKALEERPA-QDESN 360



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 298


>gi|406989937|gb|EKE09646.1| hypothetical protein ACD_16C00130G0051 [uncultured bacterium]
          Length = 608

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 121/528 (22%), Positives = 200/528 (37%), Gaps = 101/528 (19%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           K    EG++F    VK G         VD  G +   PG    + P+  +S         
Sbjct: 117 KNEQVEGVIFGR--VKGGF-------TVDLKGVVAFLPGSQVDIRPVRDVSPL------- 160

Query: 542 KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILS-SYAEATDRLIT--------HGW 592
              +G    F++L +   R        +V S+ AIL  + AEA   L++         G 
Sbjct: 161 ---IGVAQPFQILKMDRTR------GNIVVSRRAILEETRAEARSELVSRLEEGQILEGV 211

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +  I  +G F+    GV G    +++       PS +  VGQ ++ +I+   P ++RI+L
Sbjct: 212 VKNITDYGAFIDL-GGVDGLLHVTDIAWHRVNHPSEVLTVGQPIRVQIIRFNPENQRISL 270

Query: 653 SF--MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
               +        +   K+G+ V G V  +T                 I  E   + L H
Sbjct: 271 GMKQLESDPWTGAEVKYKIGTKVKGTVTNITDYGAF------------IELEPGVEGLVH 318

Query: 711 ATVM---KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP----NS 763
            T M   K  + PG        ++    ++  S +   +   Q +P+  + +       S
Sbjct: 319 VTEMSWTKKNVPPGKIVSTSQEVEVVVLDVDASKRRISLGMKQCIPNPWAALQEKYTVGS 378

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V G V NI E G FV     + G    S  + D    +  K Y  G  VR+ +LD++SE
Sbjct: 379 EVEGNVKNITEFGLFVGLTDDIDGMVHMSDISWDKSGEEAIKDYKKGMKVRARVLDIDSE 438

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++L +KQ                 EE ++ L+                 GS +  +V
Sbjct: 439 KERVSLGIKQISGDP-----------FEESVSNLKK----------------GSTVTCEV 471

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 935
               + G+ V+      V GFI  ++L+    E        G  + A +  + +A R + 
Sbjct: 472 TAVLETGMEVTL--AGGVSGFIRKNELSRDRAEQRSDRFAVGEKVDAKVTQIDRANRKIT 529

Query: 936 LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKE 983
           LS+K       RE +  RQA  +    ++   LG    + A +E VKE
Sbjct: 530 LSIKA------REVDEERQAMAEYGSTDSGALLG--DILGAALEQVKE 569



 Score = 44.7 bits (104), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +  L    I++G VKN+T  G FI L   +D  + +++++   V  P +   +G+ + 
Sbjct: 197  ELVSRLEEGQILEGVVKNITDYGAFIDLG-GVDGLLHVTDIAWHRVNHPSEVLTVGQPIR 255

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +++   P ++R+ + +K  +S   + +E+       +G  V G +  +  YG FI +E
Sbjct: 256  VQIIRFNPENQRISLGMKQLESDPWTGAEV----KYKIGTKVKGTVTNITDYGAFIELE 310



 Score = 43.9 bits (102), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G VKN+T  G F+ L+  +D  V +S++S D   E   K++  G  V  RVL ++   
Sbjct: 380  VEGNVKNITEFGLFVGLTDDIDGMVHMSDISWDKSGEEAIKDYKKGMKVRARVLDIDSEK 439

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +RV + +K        +S    +SNL  G  V  ++  V   G+ +T+
Sbjct: 440  ERVSLGIKQISGDPFEES----VSNLKKGSTVTCEVTAVLETGMEVTL 483


>gi|406596972|ref|YP_006748102.1| 30S ribosomal protein S1 [Alteromonas macleodii ATCC 27126]
 gi|407683979|ref|YP_006799153.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'English
           Channel 673']
 gi|407687884|ref|YP_006803057.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Balearic Sea
           AD45']
 gi|406374293|gb|AFS37548.1| 30S ribosomal protein S1 [Alteromonas macleodii ATCC 27126]
 gi|407245590|gb|AFT74776.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'English
           Channel 673']
 gi|407291264|gb|AFT95576.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Balearic Sea
           AD45']
          Length = 556

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  +KG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLEEGHEIKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    + +R+++  K+        I S Y E T     +G +T +  +GCFV   +GV+G
Sbjct: 246 LKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTK---INGQVTNLTDYGCFVEIEDGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    PS + ++G  V   ++      RRI+L     +  P     +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHE 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   + +   +V   K G E  
Sbjct: 363 K-GDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNKSGEDAVRDYKKGDEIS 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  +D       ++V G V  +   G  V     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLTDNK---KGAIVTGTVTAVDAKGVTVNLAEE 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   +     +  D ++   VG S+ +  + V+ +   + LS+K
Sbjct: 474 VDGYIRVADLAVERVEDATEVASVGDSIEAKFMGVDRKNRTVNLSVK 520



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 165/366 (45%), Gaps = 35/366 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +VKG V+++D    IV    G+K+   +P   +F+  +   +  +G ++   + 
Sbjct: 17  ETRPGSIVKGTVVSIDK--DIVLVDAGLKSESAIP-ADQFKNAEGELEIAIGDQVDVALD 73

Query: 555 GVKS---KRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            V+    + I    K    ++ + +  +Y + AT + + +G +      G F    N V+
Sbjct: 74  AVEDGFGETILSREKAKRHEAWVELEKAYEDKATIKGVINGKV-----KGGFTVEVNSVR 128

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            F P S + + P  + + +   G+ ++ +++      +++  SRR  +       R +  
Sbjct: 129 AFLPGSLVDVRPVRDTTHLE--GKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERETLL 186

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G  + G+V  +T     V +   G   G +    +A   ++H +    ++  G E
Sbjct: 187 ANLEEGHEIKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDE 240

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            + ++L  D E   + L  K    +  Q++   AS     + ++G V N+ + GCFV   
Sbjct: 241 INVKVLKFDKEKQRVSLGMKQMGNDPWQEI---ASRYPEGTKINGQVTNLTDYGCFVEIE 297

Query: 783 GRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
             + G    S+ +D    ++  SK   +G +V   +L+++ E  RI+L LKQ C ++   
Sbjct: 298 DGVEGLVHVSE-MDWTNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQ-CIANPWE 355

Query: 841 SFMQEH 846
           +F + H
Sbjct: 356 TFAESH 361


>gi|270292576|ref|ZP_06198787.1| ribosomal protein S1 [Streptococcus sp. M143]
 gi|293365610|ref|ZP_06612319.1| 30S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|307703559|ref|ZP_07640501.1| 40S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|315613325|ref|ZP_07888234.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 49296]
 gi|322375396|ref|ZP_08049909.1| ribosomal protein S1 [Streptococcus sp. C300]
 gi|331266202|ref|YP_004325832.1| 30S ribosomal protein S1 [Streptococcus oralis Uo5]
 gi|358465095|ref|ZP_09175052.1| putative ribosomal protein S1 [Streptococcus sp. oral taxon 058
           str. F0407]
 gi|406577164|ref|ZP_11052781.1| 30S ribosomal protein S1 [Streptococcus sp. GMD6S]
 gi|406586249|ref|ZP_11061182.1| 30S ribosomal protein S1 [Streptococcus sp. GMD1S]
 gi|417914944|ref|ZP_12558575.1| 30S ribosomal protein S1 [Streptococcus mitis bv. 2 str. SK95]
 gi|419779191|ref|ZP_14305067.1| S1 RNA binding domain protein [Streptococcus oralis SK10]
 gi|419780391|ref|ZP_14306241.1| S1 RNA binding domain protein [Streptococcus oralis SK100]
 gi|419782301|ref|ZP_14308110.1| S1 RNA binding domain protein [Streptococcus oralis SK610]
 gi|419814072|ref|ZP_14338876.1| 30S ribosomal protein S1 [Streptococcus sp. GMD2S]
 gi|270278555|gb|EFA24401.1| ribosomal protein S1 [Streptococcus sp. M143]
 gi|291315978|gb|EFE56422.1| 30S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|307622966|gb|EFO01961.1| 40S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|315314560|gb|EFU62603.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 49296]
 gi|321279659|gb|EFX56699.1| ribosomal protein S1 [Streptococcus sp. C300]
 gi|326682874|emb|CBZ00491.1| 30S ribosomal protein S1 [Streptococcus oralis Uo5]
 gi|342835695|gb|EGU69929.1| 30S ribosomal protein S1 [Streptococcus mitis bv. 2 str. SK95]
 gi|357066169|gb|EHI76327.1| putative ribosomal protein S1 [Streptococcus sp. oral taxon 058
           str. F0407]
 gi|383183405|gb|EIC75942.1| S1 RNA binding domain protein [Streptococcus oralis SK610]
 gi|383185550|gb|EIC78046.1| S1 RNA binding domain protein [Streptococcus oralis SK100]
 gi|383186219|gb|EIC78689.1| S1 RNA binding domain protein [Streptococcus oralis SK10]
 gi|404460252|gb|EKA06525.1| 30S ribosomal protein S1 [Streptococcus sp. GMD6S]
 gi|404472301|gb|EKA16732.1| 30S ribosomal protein S1 [Streptococcus sp. GMD2S]
 gi|404474198|gb|EKA18516.1| 30S ribosomal protein S1 [Streptococcus sp. GMD1S]
          Length = 400

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 153/366 (41%), Gaps = 41/366 (11%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        + VK
Sbjct: 4   FEDLLNSVSQVEPGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G+   V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  VGEVLDV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 656
           K G  V F  GV+GF P S L  D     ++   VGQ    +I    P   R  LS   +
Sbjct: 119 KGGLSVEF-EGVRGFIPASML--DTRFVRNTERFVGQEFDAKIKEVDPKENRFILSRREV 175

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-- 714
                +       G L  G  DVVT        +A+  S G        D L H T +  
Sbjct: 176 VEAATAAARAEVFGKLAVG--DVVTGK------VARITSFGAFIDLGGVDGLVHLTELSH 227

Query: 715 ------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 765
                 KSV+  G E + ++L L+ E   + LS K +        P D     +    VV
Sbjct: 228 ERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAKGDVV 282

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V  + + G FV  L  + G    S+    +  +  +   VGQ V   +LDVN++  R
Sbjct: 283 EGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADAER 342

Query: 826 ITLSLK 831
           ++LS+K
Sbjct: 343 VSLSIK 348



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ K+L+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIEVKILDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAKG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +V+G VK +T  G F+ +   +D  V +S +S   +E+P++   +G+ V  +VL V   
Sbjct: 280  DVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
            ++RV +++K  + R A +
Sbjct: 340  AERVSLSIKALEERPAQE 357



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  ++L +  
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNE 252

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R++++ K T       +    A+     +  G + ++   G FV    G+ G    S
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLAKGD---VVEGTVKRLTDFGAFVEVLPGIDGLVHVS 309

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           ++       P     VGQ V  +++     + R++LS      R ++++
Sbjct: 310 QISHKRIENPKEALTVGQEVTVKVLDVNADAERVSLSIKALEERPAQEE 358



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 146/373 (39%), Gaps = 64/373 (17%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            GV+G     EL  D   + +    VG+V+   ++  +       +++++   R+     
Sbjct: 39  TGVEGVLTLRELTNDRDADINDFVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARK- 97

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKP 720
                LV    +VVT        +  G S      +G IP    A  L+   V  +    
Sbjct: 98  -AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGVRGFIP----ASMLDTRFVRNTERFV 150

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G EFD ++  +D + +  +LS +  +  +     ++    +    VV G V  I   G F
Sbjct: 151 GQEFDAKIKEVDPKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSFGAF 210

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    ++    +         VG+ +   ILD+N E GR++LSLK +     
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATTPGPW 269

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +E+K+A                    G V+EG V    DFG  V  E   
Sbjct: 270 DG--------VEQKLAK-------------------GDVVEGTVKRLTDFGAFV--EVLP 300

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREAN 950
            + G +   Q++   +E+       G  +   +LDV A AER V LS+K         A 
Sbjct: 301 GIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADAER-VSLSIK---------AL 350

Query: 951 SNRQAQKKKRKRE 963
             R AQ++ +K E
Sbjct: 351 EERPAQEEGQKEE 363



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   +V G V  +TS G FI L   +D  V L+ LS     SP+    +G+ +  ++L 
Sbjct: 191  LAVGDVVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILD 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     RV ++LK +        E      L  GD+V G +KR+  +G F+ +
Sbjct: 250  LNEEEGRVSLSLKATTPGPWDGVE----QKLAKGDVVEGTVKRLTDFGAFVEV 298


>gi|77163718|ref|YP_342243.1| 30S ribosomal protein S1 [Nitrosococcus oceani ATCC 19707]
 gi|76882032|gb|ABA56713.1| SSU ribosomal protein S1P [Nitrosococcus oceani ATCC 19707]
          Length = 561

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 46/359 (12%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G  VKG V  +  +GA V   GG+  L  +  MS   I  P +   +G ++  +V
Sbjct: 187 SSLEEGKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHPSEVVNIGDDITVQV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    + +R+++  K+        +   Y + T RL   G +T +  +GCFV    GV+G
Sbjct: 246 LKFDRERQRVSLGLKQMGEDPWKDLARRYLDGT-RLF--GKVTNVTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPT-----RVS 662
               SE+   +    PS M  VG+ V+  ++      RRI+L     +  P      R +
Sbjct: 303 LVHMSEMDWTNKNIHPSKMVQVGEEVEVMVLDIDEERRRISLGMKQCLPNPWEEFAHRYN 362

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
           +DD       V+G +  +T   + V     G   G     HL+D +  +   + +I+   
Sbjct: 363 KDD------RVAGEIKSITDFGIFV-----GLEGGIDGLVHLSD-ISWSASGEEIIRDYK 410

Query: 723 EFDQ----LLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHP---NSVVHGYVCNII 773
           + DQ    +L +D E   + L  K        QL  D  +S+I      S+V G V  + 
Sbjct: 411 KGDQVEAVVLAIDPERERISLGVK--------QLEDDPFSSYIATCPKGSIVKGIVKVVD 462

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLK 831
             G  +     + G   R+  +  +R D ++T   VG S+ +    ++ +   ITLS++
Sbjct: 463 TRGAVIELAEGVEGHL-RASEIARERIDDARTSLNVGDSIEAKFTGIDRKNRVITLSVR 520


>gi|449127881|ref|ZP_21764151.1| ribosomal protein S1 [Treponema denticola SP33]
 gi|448943213|gb|EMB24105.1| ribosomal protein S1 [Treponema denticola SP33]
          Length = 811

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 143/357 (40%), Gaps = 41/357 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV- 553
           + K G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V 
Sbjct: 439 NTKIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVI 497

Query: 554 -LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            L   +KRI ++ K       L     +    D ++T G +TK    G F+    G++G 
Sbjct: 498 RLDPDNKRINLSLKHFTQDPWLQFEEKFH--VDDIVT-GTVTKTTDFGAFIELDEGIEGL 554

Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
           A  SE   +    +P  +   G  V C I+     + R++L        P    E+    
Sbjct: 555 AHISEFSWVKKINKPEDILKPGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTIEERYPV 614

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYEFD 725
              L   VV +    A              I  E   D   HA   + +K V  PG E +
Sbjct: 615 GTRLTRKVVKITNAGAF-------------ISLEEGIDGFLHADDISWIKRVKHPGSELE 661

Query: 726 -----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
                +++V+  D ES  + L  K    +  ++     +     S+V G V +I + G F
Sbjct: 662 VGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKF---GAAYKVGSIVEGEVSSITDFGVF 718

Query: 779 VRFLGRLTGFAPRSKAVDGQ----RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V+  G + G   +   V+ +       L+K Y VG  +++ ++++N    +   S+K
Sbjct: 719 VKVPGDIEGLIHKQNLVESRDETPEEALAK-YAVGDKIKAVVIEINPRNKKTAFSIK 774



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 114/554 (20%), Positives = 210/554 (37%), Gaps = 109/554 (19%)

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           + +E  + G ++A   E  +      + G + +G V+AV++    V   G  +   PL  
Sbjct: 245 KDVEKDSNGNIQAQLQEEYLNNFEAPEAGTIKEGYVVAVNNGTVFVDVGGKSEGHIPLDE 304

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLIT 589
             E    +P    KV  ++   +   +S    ++  K L   +L +   + +A  D+   
Sbjct: 305 FDE----EP----KVNDKVNVLIEKTESSNGHLSVSK-LKADRLILQKEFKQAYADKTPI 355

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQV-VKCRIMS 642
            G I+K  + G  V+   G+  F P S+  +    +P ++      +++ ++    R   
Sbjct: 356 DGTISKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLVGVKSKFYIEKLSFNSRSGE 415

Query: 643 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           +I  +RR  +    +  R +     K+G  V G V   T     + +   G   G +   
Sbjct: 416 NIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTVKSFTSFGAFIDL---GGFDGLL--- 469

Query: 703 HLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           H+ D    H T  K  +K G E + +++ LD ++  + LS K+   +   Q        H
Sbjct: 470 HINDMSWGHVTRPKDFVKKGEEIELKVIRLDPDNKRINLSLKHFTQDPWLQF---EEKFH 526

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSN 815
            + +V G V    + G F+     + G A  S     K ++ +  D+ K    G  V   
Sbjct: 527 VDDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKIN-KPEDILKP---GDKVTCM 582

Query: 816 ILDVNSETGRITLSLKQSCCSSTD----------------------ASFMQ-----EHFL 848
           IL  + + GR++L LKQ   +  D                       +F+      + FL
Sbjct: 583 ILGYDIQAGRVSLGLKQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFL 642

Query: 849 LEEKIAMLQSSKHNGSEL---------------------------------KWVEGFIIG 875
             + I+ ++  KH GSEL                                 K+   + +G
Sbjct: 643 HADDISWIKRVKHPGSELEVGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVG 702

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAIL 925
           S++EG+V    DFGV V      D+ G I    L  +  E+          G  I+A ++
Sbjct: 703 SIVEGEVSSITDFGVFVKV--PGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVI 760

Query: 926 DVAKAERLVDLSLK 939
           ++    +    S+K
Sbjct: 761 EINPRNKKTAFSIK 774



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P +K
Sbjct: 446  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPDNK 504

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK        Q E       HV DIV G + +   +G FI ++
Sbjct: 505  RINLSLKHFTQDPWLQFE----EKFHVDDIVTGTVTKTTDFGAFIELD 548


>gi|344341672|ref|ZP_08772589.1| ribosomal protein S1 [Thiocapsa marina 5811]
 gi|343798426|gb|EGV16383.1| ribosomal protein S1 [Thiocapsa marina 5811]
          Length = 559

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 147/366 (40%), Gaps = 40/366 (10%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA +   GG+  L  +  M+   +  P +  ++G E+  +VL
Sbjct: 188 NLEEGMEVKGIVKNLTDYGAFLDL-GGIDGLLHITDMAWRRVKHPSEVVEIGDEVTVKVL 246

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               + +R+++  K+      + I   Y E+T      G +T I  +GCFV    GV+G 
Sbjct: 247 KFDRERQRVSLGLKQMGEDPWVNISRRYPESTR---VFGKVTNIADYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV- 667
              SE+   +    PS +  +G  V+  ++      RRI+L      M P     D+   
Sbjct: 304 VHVSEMDWTNKNIHPSKVVALGDEVEVMVLDIDEERRRISLGIKQCAMNPW----DEFAV 359

Query: 668 --KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYE 723
             K G  VSG +  +T   + +     G   G     HL+D    E         K G E
Sbjct: 360 THKKGDHVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWDEAGEQALRRYKKGDE 414

Query: 724 FDQ-LLVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETG 776
            +  +L +D E   + L  K        QL  D      A H    SVV G + ++   G
Sbjct: 415 LETVVLSVDPERERISLGVK--------QLDKDPFSSFVALH-EKGSVVTGTILDVDPKG 465

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
             +     + G+   S+    +  D       G+ + +  L V+ +   ++LS+K     
Sbjct: 466 ATIALADGVEGYLRASEISRDRIEDARAVLKAGEEIEAKFLGVDRKNRTLSLSMKAKDVE 525

Query: 837 STDASF 842
              A+ 
Sbjct: 526 EEQAAI 531



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 99/451 (21%), Positives = 181/451 (40%), Gaps = 75/451 (16%)

Query: 247 GYILHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGV-----VRSIDRTRKVVYLSS 298
           G+ +  G  +   FLP       S +DV+P      L+G      V  +DR R  V +S 
Sbjct: 119 GFTVDLG--TVRAFLP------GSLVDVRPVRDTTYLEGKEQEFKVIKLDRKRNNVVVSR 170

Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
                 + V ++      D L+  +     V+ I++N      LT +   +D+  +    
Sbjct: 171 ------RAVVEEEYSAERDQLLKNLEEGMEVKGIVKN------LTDYGAFLDLGGIDGLL 218

Query: 359 PTTNWKNDYNQH--------KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV 405
             T+      +H         +V  ++L  D   + V L L     +P++  +R  P   
Sbjct: 219 HITDMAWRRVKHPSEVVEIGDEVTVKVLKFDRERQRVSLGLKQMGEDPWVNISRRYPEST 278

Query: 406 ----KVGDIYDQSKVVRVDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
               KV +I D    V ++ G+ GL+    +D  +  +     V + D  E  V  ++++
Sbjct: 279 RVFGKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVALGDEVEVMVLDIDEE 338

Query: 457 YKEGSCVRVRI-LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
                  R RI LG +            + ++    TH   K G  V GK+ ++  FG  
Sbjct: 339 -------RRRISLGIKQC--------AMNPWDEFAVTH---KKGDHVSGKIKSITDFGIF 380

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFRVLGVKSKRITVTHK-KTLVKSK 573
           +   GG+  L  L  +S  E  +   +++K G EL   VL V  +R  ++   K L K  
Sbjct: 381 IGLDGGIDGLVHLSDISWDEAGEQALRRYKKGDELETVVLSVDPERERISLGVKQLDKDP 440

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
            +   +  E     +  G I  ++  G  +   +GV+G+   SE+  D   +  ++   G
Sbjct: 441 FSSFVALHEKGS--VVTGTILDVDPKGATIALADGVEGYLRASEISRDRIEDARAVLKAG 498

Query: 634 QVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           + ++ + +     +R ++LS  MK   V E+
Sbjct: 499 EEIEAKFLGVDRKNRTLSLS--MKAKDVEEE 527



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 153/389 (39%), Gaps = 45/389 (11%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L+ ++EGM +   VK++ D+G  L  G     G L   ++A    ++    V+ G  +  
Sbjct: 186 LKNLEEGMEVKGIVKNLTDYGAFLDLG--GIDGLLHITDMAWRRVKHPSEVVEIGDEVTV 243

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSF 341
            V   DR R+ V L        K + +D   ++I    P    V  +V +I + G  +  
Sbjct: 244 KVLKFDRERQRVSLGL------KQMGED-PWVNISRRYPESTRVFGKVTNIADYGCFVEI 296

Query: 342 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-----TLNPY-- 394
                G V +  +  T    +         +V   +L +D   R + L      +NP+  
Sbjct: 297 EEGVEGLVHVSEMDWTNKNIHPSKVVALGDEVEVMVLDIDEERRRISLGIKQCAMNPWDE 356

Query: 395 --LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV-R 451
             + H +      K+  I D    + +D G+  L             V +SD++ +E   
Sbjct: 357 FAVTHKKGDHVSGKIKSITDFGIFIGLDGGIDGL-------------VHLSDISWDEAGE 403

Query: 452 KLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
           +  ++YK+G  +   +L     R    L    L    F   V  H   + G VV G ++ 
Sbjct: 404 QALRRYKKGDELETVVLSVDPERERISLGVKQLDKDPFSSFVALH---EKGSVVTGTILD 460

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
           VD  GA +    GV+       +S   I       K G E+  + LGV  K++ ++++ K
Sbjct: 461 VDPKGATIALADGVEGYLRASEISRDRIEDARAVLKAGEEIEAKFLGVDRKNRTLSLSMK 520

Query: 567 KTLVKSKLAILSSYAEATDRLITHGWITK 595
              V+ + A +  Y+  +    T G + K
Sbjct: 521 AKDVEEEQAAIKGYSRDSSTATTLGDLLK 549



 Score = 40.8 bits (94), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +++L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   IG  V  +
Sbjct: 186  LKNLEEGMEVKGIVKNLTDYGAFLDLG-GIDGLLHITDMAWRRVKHPSEVVEIGDEVTVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            VL  +   +RV + LK    +      +N          V G++  +  YG F+ IE 
Sbjct: 245  VLKFDRERQRVSLGLK----QMGEDPWVNISRRYPESTRVFGKVTNIADYGCFVEIEE 298


>gi|417643269|ref|ZP_12293329.1| 30S ribosomal protein S1 [Staphylococcus warneri VCU121]
 gi|445059617|ref|YP_007385021.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
 gi|330686048|gb|EGG97671.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU121]
 gi|443425674|gb|AGC90577.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
          Length = 392

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I KP +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S +  GQ +K ++    P + R+ LS   K    +E+++ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQTIKIKVEELDPENNRVILS--RKAVEQAENEVKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     V +   G   G +    L+   +H    + V+  
Sbjct: 185 ASLLDSLNAGDVIEGTVARLTNFGAFVDI---GGVDGLVHVSELSH--QHVQSPEEVVSV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G + + ++  ++ ++  + LS K +L     Q+       H N V+ G V  +   G FV
Sbjct: 240 GDKVNVKVKSVEKDTERISLSIKDTLPTPFAQI---KGQFHENDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+          +    GQ V   IL ++ E  R++LS+K +  +   
Sbjct: 297 EIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 VESDASTTQSYL 368



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 26/261 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           ++KV  V +G GL++D+      P++ +ST      SD   + ++ K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDFEGQTIKIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E     + KAS  + L         G V++G V  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENEVKKASLLDSL-------NAGDVIEGTVARLTNFGAFVDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG ++  +V  V+  ++RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHQHVQSPEEVVSVGDKVNVKVKSVEKDTERISLSIKDTLPTPFAQIKGQFHEN 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV    GVQG    SE+       P  +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGI 336

Query: 644 IPASRRINLSFMMKPTRVSED 664
              + R++LS  +K T  +ED
Sbjct: 337 DEENERVSLS--IKATLPNED 355



 Score = 48.1 bits (113), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE+   +G  V  +
Sbjct: 188  LDSLNAGDVIEGTVARLTNFGAFVDIG-GVDGLVHVSELSHQHVQSPEEVVSVGDKVNVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  ++R+ +++K  D+     ++I      H  D++ G + R+ ++G F+ I
Sbjct: 247  VKSVEKDTERISLSIK--DTLPTPFAQIK--GQFHENDVIEGTVVRLANFGAFVEI 298


>gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
 gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
          Length = 441

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K GM ++G V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL 
Sbjct: 204 LKVGMKLQGTVSSIVEFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLD 262

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +RI++  K+T       ++S +       I  G +TK+   G FV   +GV+G  
Sbjct: 263 VDLNRERISLGLKQTTEDPWRVLVSKFPVDA---IVEGTVTKLVTFGAFVDLGDGVEGLV 319

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SE+       PS +  VG  V+ ++M      RRI+LS 
Sbjct: 320 HISEMAKQHVTAPSQVCTVGDKVQVKVMEIDLDRRRISLSM 360



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 143/367 (38%), Gaps = 54/367 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE+    +      +G  P  EL +    EPS + H+G  ++  ++      
Sbjct: 36  LVTGTVVKIERDEVLLDIGYKSEGVIPARELSIRKDVEPSELVHMGDEIEALVLQKEDKE 95

Query: 648 RRINLSFMMKPTRVSE---DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        S    ++    G  V G V  V    +++ +  +G+   ++     
Sbjct: 96  GRLVLSKKRAEYERSWKAVEEKFNAGETVEGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 705 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNS 763
              L  +T M + I+      +++ +D   +N++LS +  L  + +    D    +    
Sbjct: 156 VKDL--STFMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEEARKAERQDILGKLKVGM 208

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            + G V +I+E G FV  LG + G    S+         S+   VGQ V   +LDV+   
Sbjct: 209 KLQGTVSSIVEFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNR 267

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIEG 880
            RI+L LKQ+                              +E  W   V  F + +++EG
Sbjct: 268 ERISLGLKQT------------------------------TEDPWRVLVSKFPVDAIVEG 297

Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERL 933
            V +   FG  V   +   V G +   ++A   V +       G  +Q  ++++    R 
Sbjct: 298 TVTKLVTFGAFVDLGDG--VEGLVHISEMAKQHVTAPSQVCTVGDKVQVKVMEIDLDRRR 355

Query: 934 VDLSLKT 940
           + LS+K 
Sbjct: 356 ISLSMKA 362


>gi|156741406|ref|YP_001431535.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
            DSM 13941]
 gi|156232734|gb|ABU57517.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 503

 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 1363 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1422
             + P     +++DL+P M ++G V ++   G F+ +    D  V +S +SD  +ESP   
Sbjct: 123  AEAPTGRPRRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDL 182

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS---------EINNLSNLHVGDIVI 1473
              IG  V  RV SVEP  +R+ +T++  +     +S         + + L+ L VGD V 
Sbjct: 183  VKIGDTVKVRVKSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDKLAALRVGDNVE 242

Query: 1474 GQIKRVESYGLFITI 1488
            G +  +  +G+F+ I
Sbjct: 243  GTVTGLAPFGVFVDI 257



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 34/262 (12%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +T I  +G FV    G  G    SE+       PS +  +G  VK R+ S  P  RR
Sbjct: 143 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 202

Query: 650 INLSFMMKP-------------TRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
           I+L+  MK                V  D L  +++G  V G V  + P  V V +   G 
Sbjct: 203 ISLTMRMKERGAEPRSGRGKKKPEVDYDKLAALRVGDNVEGTVTGLAPFGVFVDI---GV 259

Query: 695 SK-GTIPTEHLAD-HLEHATVMKSVIKPG--YEFDQLLVLDNESSNLLLSAKYSLINSAQ 750
            K G +    LA+  +E A   + V++ G  Y F ++L +D E + + LS + +     Q
Sbjct: 260 GKDGLVHVSELAEGRVEKA---EDVVQVGQTYTF-KVLEVDAEGARISLSLRRA--QRGQ 313

Query: 751 QLPSDASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           +L      +    ++ G +  +   G FV   +GR  G    S+  + + A +     VG
Sbjct: 314 KL----QQLEKGQILEGTISGLAPFGAFVDIGVGR-DGLVHISELSNARVARVEDAVKVG 368

Query: 810 QSVRSNILDVNSETGRITLSLK 831
             V+  +LDV+ ++ RI+LSL+
Sbjct: 369 DKVQVRVLDVDPQSKRISLSLR 390



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 55/262 (20%)

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR------PFQDGISDKTVDISNDNM 1253
            PS+L        IG  V   V S+  + + + L +R        + G   K  ++  D +
Sbjct: 179  PSDL------VKIGDTVKVRVKSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDKL 232

Query: 1254 QTFIHEGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                     VG  +   ++G+   G+ V IG    G VH +EL             EG+ 
Sbjct: 233  AALR-----VGDNVEGTVTGLAPFGVFVDIGVGKDGLVHVSELA------------EGRV 275

Query: 1312 DPLSGYDE-GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
            +      + GQ    KVLE+         + LSLR +  G                    
Sbjct: 276  EKAEDVVQVGQTYTFKVLEVDAE---GARISLSLRRAQRG-------------------- 312

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            +K++ L    I++G +  +   G F+ +    D  V +S LS+  V   E    +G  V 
Sbjct: 313  QKLQQLEKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNARVARVEDAVKVGDKVQ 372

Query: 1431 GRVLSVEPLSKRVEVTLKTSDS 1452
             RVL V+P SKR+ ++L+  D+
Sbjct: 373  VRVLDVDPQSKRISLSLRLEDT 394



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 27/263 (10%)

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            +A +E  T   +R K  +    G  ++  +T I    + +  G+G  G +HI+E++D + 
Sbjct: 120  QAPAEAPTGRPRRVKDLAP---GMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTR- 175

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD- 1160
              +E+     KIG TV  R+  KS +PD ++  L     +      S  G K    + D 
Sbjct: 176  --IESPSDLVKIGDTVKVRV--KSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDK 231

Query: 1161 ---VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
               + +G  V G V  +      + I       + +  S      +++ +    +G+  T
Sbjct: 232  LAALRVGDNVEGTVTGLAPFGVFVDIGVGKDGLVHV--SELAEGRVEKAEDVVQVGQTYT 289

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              VL ++ E   + L LR  Q G            +Q  + +G I+ G IS +     G 
Sbjct: 290  FKVLEVDAEGARISLSLRRAQRG----------QKLQQ-LEKGQILEGTISGLAP--FGA 336

Query: 1278 VVQIGPHLYGRVHFTELKNICVS 1300
             V IG    G VH +EL N  V+
Sbjct: 337  FVDIGVGRDGLVHISELSNARVA 359



 Score = 40.0 bits (92), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 25/213 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+ PGM ++G+V ++  +G  V    G   L  +  MS+  I  P    K+G  +  RV 
Sbjct: 135 DLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVK 194

Query: 555 GVK--SKRITVT---------------HKKTLVK-SKLAILSSYAEATDRLITHGWITKI 596
            V+   +RI++T                KK  V   KLA L       D +   G +T +
Sbjct: 195 SVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDKLAAL----RVGDNV--EGTVTGL 248

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
              G FV    G  G    SEL      +   +  VGQ    +++       RI+LS + 
Sbjct: 249 APFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAEGARISLS-LR 307

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
           +  R  +   ++ G ++ G +  + P    V +
Sbjct: 308 RAQRGQKLQQLEKGQILEGTISGLAPFGAFVDI 340


>gi|258404285|ref|YP_003197027.1| 30S ribosomal protein S1 [Desulfohalobium retbaense DSM 5692]
 gi|257796512|gb|ACV67449.1| ribosomal protein S1 [Desulfohalobium retbaense DSM 5692]
          Length = 575

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 145/343 (42%), Gaps = 26/343 (7%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558
           VV GKV  +  +G  V   GG+  L  +  M+   I  P +  ++G +L  +VL    +S
Sbjct: 209 VVHGKVKNITEYGVFVDL-GGLDGLLHITDMAWKRIRHPKEMVQLGDDLELKVLNFDQES 267

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           +++++  K+ +    + I + + E        G +T I  +G FV    GV+G    SE+
Sbjct: 268 EKVSLGLKQLVPDPWVDIANKFPEGEK---FSGKVTNIVDYGAFVELEPGVEGLVHISEM 324

Query: 619 GLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
                   PS +  VG  V   I+      +RI+L   MK  R +  D+V        V+
Sbjct: 325 SWTRKLRHPSQVCQVGDEVDVVILGVDSDRKRISLG--MKQVRPNPWDVVSEKYPEGTVL 382

Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-------QLLVL 730
           +    N +  + +  G   G     H++D     +  K +  P   +        ++L +
Sbjct: 383 EAPIKN-ITDFGMFIGIEDGIDGLIHVSD----ISWTKKIRHPNELYQVGDVVQAKVLTV 437

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFA 789
           D E+    L  K    +   Q+P+     +P  + V G V NI + G FV     + G  
Sbjct: 438 DKENEKFTLGIKQLSEDPWSQIPAR----YPVGTNVEGKVTNITDFGLFVEVEEGIEGLV 493

Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             S+    +    S+ +  GQ V + ++ V+ +  R+ LS+KQ
Sbjct: 494 HLSELSRKKIKTPSEHFEEGQEVSAKVIHVSGDERRLGLSIKQ 536



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 119/566 (21%), Positives = 202/566 (35%), Gaps = 95/566 (16%)

Query: 579  SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
             + E  D  I  G I +I      V      +G  P +E       E +    VG  V  
Sbjct: 29   DFGEVEDGSIARGEIVRIGDESVLVDVNFKSEGEIPIAEF---QDSEGNLKVSVGDKVDV 85

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
             ++        I LS+         DDL +       V   +       YV+     +  
Sbjct: 86   FVVHKDELEGTIRLSYERAKRMKVLDDLDEKMQNEENVTGRIIRRIKGGYVVEVHGVEAF 145

Query: 699  IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-S 757
            +P  H+   L     M +++   +EF ++L ++   SN+++S +  L    +    +   
Sbjct: 146  LPGSHV--DLRPVPDMDALVGQDFEF-RILKINRRRSNVIVSRRVLLEEERESKRQELLK 202

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             +  + VVHG V NI E G FV  LG L G    +     +     +   +G  +   +L
Sbjct: 203  TLEEDQVVHGKVKNITEYGVFVD-LGGLDGLLHITDMAWKRIRHPKEMVQLGDDLELKVL 261

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE---GFII 874
            + + E+ +++L LKQ                                   WV+    F  
Sbjct: 262  NFDQESEKVSLGLKQLVPDP------------------------------WVDIANKFPE 291

Query: 875  GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 934
            G    GKV    D+G  V  E   +    I+             V Q            V
Sbjct: 292  GEKFSGKVTNIVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQVCQVG--------DEV 343

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENY---LVLSLP 991
            D+ +  V  DR R +                  LG+ Q      ++V E Y    VL  P
Sbjct: 344  DVVILGVDSDRKRIS------------------LGMKQVRPNPWDVVSEKYPEGTVLEAP 385

Query: 992  -----EYNHSIGYAS-------VSDYNTQK---FPQKQFLNGQSVIATVMALPSSSTAGR 1036
                 ++   IG          VSD +  K    P + +  G  V A V+ +   +   +
Sbjct: 386  IKNITDFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYQVGDVVQAKVLTVDKENE--K 443

Query: 1037 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
              L +K +SE   S     +  + Y VG+ V+ ++T I    L ++   G  G +H++E+
Sbjct: 444  FTLGIKQLSEDPWS-----QIPARYPVGTNVEGKVTNITDFGLFVEVEEGIEGLVHLSEL 498

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARII 1122
            +  K   ++    +F+ GQ V+A++I
Sbjct: 499  SRKK---IKTPSEHFEEGQEVSAKVI 521



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 12/162 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVL 554
           G V++  +  +  FG  +    G+  L    H+S+    K    P + ++VG  +  +VL
Sbjct: 379 GTVLEAPIKNITDFGMFIGIEDGIDGLI---HVSDISWTKKIRHPNELYQVGDVVQAKVL 435

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  ++++ T+  K+        I + Y   T+     G +T I   G FV    G++G 
Sbjct: 436 TVDKENEKFTLGIKQLSEDPWSQIPARYPVGTN---VEGKVTNITDFGLFVEVEEGIEGL 492

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SEL       PS  +  GQ V  +++      RR+ LS 
Sbjct: 493 VHLSELSRKKIKTPSEHFEEGQEVSAKVIHVSGDERRLGLSI 534



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 135/328 (41%), Gaps = 52/328 (15%)

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
            Q V G V  +  E+ +      L   L I D A++   ++  +    +G  +   VL+ +
Sbjct: 208  QVVHGKVKNI-TEYGVFVDLGGLDGLLHITDMAWK--RIRHPKEMVQLGDDLELKVLNFD 264

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
            +E + + L L+     + D  VDI+N        EG+   G+++ I+    G  V++ P 
Sbjct: 265  QESEKVSLGLKQL---VPDPWVDIANK-----FPEGEKFSGKVTNIVDY--GAFVELEPG 314

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            + G VH +E+           +      P      G  V   +L +    +         
Sbjct: 315  VEGLVHISEMS----------WTRKLRHPSQVCQVGDEVDVVILGVDSDRK--------- 355

Query: 1345 RSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
            R SL GM     N  D+ +            E      +++  +KN+T  G FI +   +
Sbjct: 356  RISL-GMKQVRPNPWDVVS------------EKYPEGTVLEAPIKNITDFGMFIGIEDGI 402

Query: 1403 DAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1461
            D  + +S++S    +  P + + +G +V  +VL+V+  +++  + +K       SQ    
Sbjct: 403  DGLIHVSDISWTKKIRHPNELYQVGDVVQAKVLTVDKENEKFTLGIKQLSEDPWSQIP-- 460

Query: 1462 NLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              +   VG  V G++  +  +GLF+ +E
Sbjct: 461  --ARYPVGTNVEGKVTNITDFGLFVEVE 486



 Score = 40.0 bits (92), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 143/355 (40%), Gaps = 57/355 (16%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
           L+T++E  V+   VK+I ++G  +  G     G L   ++A                 + 
Sbjct: 201 LKTLEEDQVVHGKVKNITEYGVFVDLG--GLDGLLHITDMA----------------WKR 242

Query: 287 IDRTRKVVYLSSDP-------DTVSKCVTKDLKGISIDLLV-------PGMMVSTRVQSI 332
           I   +++V L  D        D  S+ V+  LK +  D  V        G   S +V +I
Sbjct: 243 IRHPKEMVQLGDDLELKVLNFDQESEKVSLGLKQLVPDPWVDIANKFPEGEKFSGKVTNI 302

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL- 391
           ++ G  +       G V I  +  T    +         +V+  IL VD   + + L + 
Sbjct: 303 VDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQVCQVGDEVDVVILGVDSDRKRISLGMK 362

Query: 392 ----NPY-LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
               NP+ ++  + P   V    + +I D    + ++ G+  L             + +S
Sbjct: 363 QVRPNPWDVVSEKYPEGTVLEAPIKNITDFGMFIGIEDGIDGL-------------IHVS 409

Query: 444 DVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           D++  +++R   + Y+ G  V+ ++L   +  E    GI + S  +      +    G  
Sbjct: 410 DISWTKKIRHPNELYQVGDVVQAKVLTVDKENEKFTLGIKQLSE-DPWSQIPARYPVGTN 468

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           V+GKV  +  FG  V+   G++ L  L  +S  +I  P + F+ G E+  +V+ V
Sbjct: 469 VEGKVTNITDFGLFVEVEEGIEGLVHLSELSRKKIKTPSEHFEEGQEVSAKVIHV 523


>gi|339448321|ref|ZP_08651877.1| 30S ribosomal protein S1 [Lactobacillus fructivorans KCTC 3543]
          Length = 406

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 6/177 (3%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I +A   E      S +KPG +V+GKV  + +FGA V   GG+  L  +  +S   + KP
Sbjct: 185 IAEAERKEARDRIMSTLKPGDIVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYEHVNKP 243

Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
               KVG E+  +VL V     RI+++ K+T       I     + +   +  G + ++ 
Sbjct: 244 SDVLKVGEEVKVKVLSVDPDRNRISLSIKQTQPGPWSDIEEKAPKGS---VLDGKVKRLV 300

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G FV  + GV+G    S++      +PS +   G+ VK +++   P   R+ LS 
Sbjct: 301 DFGAFVEVFPGVEGLVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSM 357



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 156/391 (39%), Gaps = 54/391 (13%)

Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--VQGFAPRSELGLDPGCEPSS 628
           K  LA L +  +     + +G +  I+     V    G  V+G  PR E+       P+S
Sbjct: 10  KDLLAALDNIKQVNVGYVVNGEVLAIDDDQQLVVGIEGAGVEGVIPRKEISAQREDNPTS 69

Query: 629 MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---DDLVKLGSLVSGVVDVVTPNAV 685
            Y VG  VK  ++S I   +    S+++   R+      D +K  +     ++V    AV
Sbjct: 70  NYKVGDKVKVVVVSRIGDDKE-GGSYLLSIRRLEALKVWDEIKEKADKGETINVTVTRAV 128

Query: 686 V--VYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742
              + V A G  +G IP   + DH ++     K     G E +  ++      N L+ + 
Sbjct: 129 KGGLVVNADGV-RGFIPASMITDHFVDDLNQFK-----GQELEVKIIEVVPEENRLILSH 182

Query: 743 YSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
            ++  + ++   D   S + P  +V G V  +   G FV  LG + G    S+       
Sbjct: 183 RAIAEAERKEARDRIMSTLKPGDIVEGKVARLTNFGAFVD-LGGIDGLVHVSEISYEHVN 241

Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
             S    VG+ V+  +L V+ +  RI+LS+KQ+               +EEK        
Sbjct: 242 KPSDVLKVGEEVKVKVLSVDPDRNRISLSIKQTQPGPWSD--------IEEKAPK----- 288

Query: 861 HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE----- 915
                         GSV++GKV    DFG  V  E    V G +   Q++   ++     
Sbjct: 289 --------------GSVLDGKVKRLVDFGAFV--EVFPGVEGLVHISQISHKHIDKPSDV 332

Query: 916 --SGSVIQAAILDVAKAERLVDLSLKTVFID 944
             SG  ++  +LDV   E  + LS+K +  D
Sbjct: 333 LKSGEDVKVKVLDVQPEEHRLALSMKALEKD 363



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L P  IV+G V  +T+ G F+ L   +D  V +S +S  +V  P     +G+ V  +VLS
Sbjct: 201  LKPGDIVEGKVARLTNFGAFVDLG-GIDGLVHVSEISYEHVNKPSDVLKVGEEVKVKVLS 259

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V+P   R+ +++K +     S  E         G ++ G++KR+  +G F+ +
Sbjct: 260  VDPDRNRISLSIKQTQPGPWSDIE----EKAPKGSVLDGKVKRLVDFGAFVEV 308



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 148/352 (42%), Gaps = 31/352 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGA-IVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF-- 551
           V  G VV G+V+A+D     +V   G GV+ + P   +S      P   +KVG ++    
Sbjct: 22  VNVGYVVNGEVLAIDDDQQLVVGIEGAGVEGVIPRKEISAQREDNPTSNYKVGDKVKVVV 81

Query: 552 --RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT-HGWITKIEKHGCFVRFYNG 608
             R+   K     +   + L    L +     E  D+  T +  +T+  K G  V   +G
Sbjct: 82  VSRIGDDKEGGSYLLSIRRL--EALKVWDEIKEKADKGETINVTVTRAVKGGLVVN-ADG 138

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL 666
           V+GF P S +  D   +  + +  GQ ++ +I+  +P   R+ LS   + +  R    D 
Sbjct: 139 VRGFIPASMI-TDHFVDDLNQFK-GQELEVKIIEVVPEENRLILSHRAIAEAERKEARDR 196

Query: 667 V----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
           +    K G +V G V  +T     V +   G   G +    ++   EH      V+K G 
Sbjct: 197 IMSTLKPGDIVEGKVARLTNFGAFVDL---GGIDGLVHVSEIS--YEHVNKPSDVLKVGE 251

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFV 779
           E   ++L +D + + + LS K +     Q  P SD     P  SV+ G V  +++ G FV
Sbjct: 252 EVKVKVLSVDPDRNRISLSIKQT-----QPGPWSDIEEKAPKGSVLDGKVKRLVDFGAFV 306

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                + G    S+         S     G+ V+  +LDV  E  R+ LS+K
Sbjct: 307 EVFPGVEGLVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSMK 358


>gi|49483663|ref|YP_040887.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425540|ref|ZP_05601965.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428199|ref|ZP_05604597.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430829|ref|ZP_05607211.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433588|ref|ZP_05609946.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436429|ref|ZP_05612476.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M876]
 gi|282904058|ref|ZP_06311946.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus C160]
 gi|282905822|ref|ZP_06313677.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908793|ref|ZP_06316611.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911053|ref|ZP_06318855.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914266|ref|ZP_06322053.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M899]
 gi|282919189|ref|ZP_06326924.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C427]
 gi|282924373|ref|ZP_06332047.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C101]
 gi|283958240|ref|ZP_06375691.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501291|ref|ZP_06667142.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510253|ref|ZP_06668961.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M809]
 gi|293526848|ref|ZP_06671532.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M1015]
 gi|295427984|ref|ZP_06820616.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591046|ref|ZP_06949684.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MN8]
 gi|384867616|ref|YP_005747812.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|417889212|ref|ZP_12533310.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21195]
 gi|418582340|ref|ZP_13146418.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1605]
 gi|418597176|ref|ZP_13160709.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21342]
 gi|418603340|ref|ZP_13166727.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21345]
 gi|418892142|ref|ZP_13446255.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1176]
 gi|418898046|ref|ZP_13452116.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC341D]
 gi|418900914|ref|ZP_13454971.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1214]
 gi|418909222|ref|ZP_13463221.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG149]
 gi|418917306|ref|ZP_13471265.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1267]
 gi|418923089|ref|ZP_13477005.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1233]
 gi|418982418|ref|ZP_13530126.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1242]
 gi|418986085|ref|ZP_13533771.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1500]
 gi|81651112|sp|Q6GGT5.1|RS1_STAAR RecName: Full=30S ribosomal protein S1
 gi|49241792|emb|CAG40483.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271997|gb|EEV04135.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275040|gb|EEV06527.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278957|gb|EEV09576.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281681|gb|EEV11818.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284711|gb|EEV14831.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M876]
 gi|282313760|gb|EFB44153.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C101]
 gi|282316999|gb|EFB47373.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C427]
 gi|282322334|gb|EFB52658.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M899]
 gi|282324748|gb|EFB55058.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327057|gb|EFB57352.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331114|gb|EFB60628.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595676|gb|EFC00640.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus C160]
 gi|283790389|gb|EFC29206.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920406|gb|EFD97470.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M1015]
 gi|291096296|gb|EFE26557.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467197|gb|EFF09715.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M809]
 gi|295128342|gb|EFG57976.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575932|gb|EFH94648.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MN8]
 gi|312438121|gb|ADQ77192.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|341852669|gb|EGS93556.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21195]
 gi|374393155|gb|EHQ64470.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21345]
 gi|374395412|gb|EHQ66679.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21342]
 gi|377703382|gb|EHT27698.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1214]
 gi|377704699|gb|EHT29008.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1242]
 gi|377705903|gb|EHT30207.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1500]
 gi|377710750|gb|EHT34988.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1605]
 gi|377730436|gb|EHT54503.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1176]
 gi|377735048|gb|EHT59084.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1233]
 gi|377750480|gb|EHT74418.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG1267]
 gi|377752628|gb|EHT76547.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIG149]
 gi|377761081|gb|EHT84957.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CIGC341D]
          Length = 391

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N  + G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDDIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 168/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +D   G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDDIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373


>gi|407700220|ref|YP_006825007.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Black Sea
           11']
 gi|407249367|gb|AFT78552.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Black Sea
           11']
          Length = 556

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  +KG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLEEGHEIKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    + +R+++  K+        I S Y E T     +G +T +  +GCFV   +GV+G
Sbjct: 246 LKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTK---INGQVTNLTDYGCFVEIEDGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    PS + ++G  V   ++      RRI+L     +  P     +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHE 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   + +   +V   K G E  
Sbjct: 363 K-GDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNKSGEDAVRDYKKGDEIS 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  +D       ++V G V  +   G  V     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLTDNK---KGAIVTGTVTAVDAKGVTVNLAEE 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   +     +  D ++   VG S+ +  + V+ +   + LS+K
Sbjct: 474 VDGYIRVADLAVERVEDATEVASVGDSIEAKFMGVDRKNRTVNLSVK 520



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 165/366 (45%), Gaps = 35/366 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +VKG V+++D    IV    G+K+   +P   +F+  +   +  +G ++   + 
Sbjct: 17  ETRPGSIVKGAVVSIDK--DIVLVDAGLKSESAIP-ADQFKNAEGELEIAIGDQVDVALD 73

Query: 555 GVKS---KRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            V+    + I    K    ++ + +  +Y + AT + + +G +      G F    N V+
Sbjct: 74  AVEDGFGETILSREKAKRHEAWVELEKAYEDKATIKGVINGKV-----KGGFTVEVNSVR 128

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            F P S + + P  + + +   G+ ++ +++      +++  SRR  +       R +  
Sbjct: 129 AFLPGSLVDVRPVRDTTHLE--GKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERETLL 186

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G  + G+V  +T     V +   G   G +    +A   ++H +    ++  G E
Sbjct: 187 ANLEEGHEIKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDE 240

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            + ++L  D E   + L  K    +  Q++   AS     + ++G V N+ + GCFV   
Sbjct: 241 INVKVLKFDKEKQRVSLGMKQMGNDPWQEI---ASRYPEGTKINGQVTNLTDYGCFVEIE 297

Query: 783 GRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
             + G    S+ +D    ++  SK   +G +V   +L+++ E  RI+L LKQ C ++   
Sbjct: 298 DGVEGLVHVSE-MDWTNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQ-CIANPWE 355

Query: 841 SFMQEH 846
           +F + H
Sbjct: 356 TFAESH 361


>gi|383312832|ref|YP_005365633.1| 30S ribosomal protein S1 [Candidatus Rickettsia amblyommii str.
           GAT-30V]
 gi|378931492|gb|AFC70001.1| 30S ribosomal protein S1 [Candidatus Rickettsia amblyommii str.
           GAT-30V]
          Length = 568

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 154/361 (42%), Gaps = 20/361 (5%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWVRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360

Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                P T+ +E++ V  G+++   +  +T   +  +V       G I    ++   +  
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
            ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   + 
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            + + G  V    ++ GF  R++  D +     + + + + + + ++ +   TGRI LS+
Sbjct: 473 EVKDEGLEVLLNNKVAGFIKRTELSDKKDEQKPEMFQIDEEIEAKVVSIEKSTGRILLSV 532

Query: 831 K 831
           K
Sbjct: 533 K 533



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 129/602 (21%), Positives = 242/602 (40%), Gaps = 103/602 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V    + ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  + +S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDHNSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWVRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +         + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKQMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                  K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + +   
Sbjct: 400  MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPY--- 454

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                        +E S +      V A++  VK+  L + L   N   G+   ++ + +K
Sbjct: 455  ------------QEISDEYKKGTIVKALITEVKDEGLEVLL--NNKVAGFIKRTELSDKK 500

Query: 1010 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 1065
              QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G 
Sbjct: 501  DEQKPEMFQIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558

Query: 1066 LV 1067
            ++
Sbjct: 559  IL 560



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
            ++ EK  + L ++  Q+            N  T   E + VG  I   +  +   G+ V 
Sbjct: 348  VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V
Sbjct: 396  LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QV 442

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             L ++                   +P  + E  ++     IV+  +  V  +G  ++L+ 
Sbjct: 443  SLGIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLNN 485

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            K+   +  + LSD   E   + F I + +  +V+S+E  + R+ +++K 
Sbjct: 486  KVAGFIKRTELSDKKDEQKPEMFQIDEEIEAKVVSIEKSTGRILLSVKA 534


>gi|227510313|ref|ZP_03940362.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189965|gb|EEI70032.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 413

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           KA   E L+ T   +  G +V+GKV  + +FGA V   GG+  L  +  ++   + KP  
Sbjct: 186 KAEEREKLMDT---LHEGDIVEGKVARLTNFGAFVDL-GGMDGLVHVSQIAYERVEKPSD 241

Query: 542 KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
             KVG E+  +VL V     RI+++ K+TL +    I       +   +  G + ++   
Sbjct: 242 VLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAPAGS---VLEGTVKRLVDF 298

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           G FV  + GV+G    S++  +    P  +  VG+ +K +++   P  +R+ LS 
Sbjct: 299 GAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDRKRLALSI 353



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 144/352 (40%), Gaps = 62/352 (17%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR-IMSSIPASRRINLSFMMKPTRVSE--- 663
           GV+G  P+ EL         +   + Q  K + +++S   S +   SF++   R+     
Sbjct: 49  GVEGVVPQREL-----SSSQNFDDIKQGDKLQLVVTSRIGSDKEGGSFLLSSRRLEARKV 103

Query: 664 -DDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVI 718
            D+L    K G  ++  V       +VV    +G+    IP   ++DH +E     K+  
Sbjct: 104 WDELAEKSKNGETITATVSQAVKGGLVVDAGVRGF----IPASMISDHYVEDLNQFKN-- 157

Query: 719 KPGYEFD-QLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
               E + +++ +D  ++ L+LS K  L    A++       +H   +V G V  +   G
Sbjct: 158 ---QELELKIIEIDPVANRLILSHKAILQAQKAEEREKLMDTLHEGDIVEGKVARLTNFG 214

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            FV  LG + G    S+    +    S    VGQ V+  +L V+ +  RI+LS+KQ+   
Sbjct: 215 AFVD-LGGMDGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDRNRISLSIKQTLPE 273

Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
             D         +EEK                      GSV+EG V    DFG  V  E 
Sbjct: 274 PWDG--------IEEKAPA-------------------GSVLEGTVKRLVDFGAFV--EV 304

Query: 897 HSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
              V G      I H  +A  G  ++ G  I+  +LDV    + + LS+K +
Sbjct: 305 FPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDRKRLALSIKAL 356



 Score = 47.4 bits (111), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 13/208 (6%)

Query: 360 TTNWKNDYNQHK--KVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-----VKVGDIYD 412
           + ++  D NQ K  ++  +I+ +DP +  + L+    L   +A         +  GDI  
Sbjct: 145 SDHYVEDLNQFKNQELELKIIEIDPVANRLILSHKAILQAQKAEEREKLMDTLHEGDIV- 203

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
           + KV R+    G  +D+          V +S +A E V K     K G  V+V++L    
Sbjct: 204 EGKVARL-TNFGAFVDLGGMD----GLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDF 258

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
                +  +K +  E           G V++G V  +  FGA V+   GV+ L  +  ++
Sbjct: 259 DRNRISLSIKQTLPEPWDGIEEKAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIA 318

Query: 533 EFEIVKPGKKFKVGAELVFRVLGVKSKR 560
              I  PG   KVG ++  +VL V   R
Sbjct: 319 HEHIATPGDVLKVGEKIKVKVLDVDPDR 346



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 150/356 (42%), Gaps = 39/356 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMS---EFEIVKPGKKF----- 543
           S+V  G VV G+V+A D    ++      GV+ + P   +S    F+ +K G K      
Sbjct: 20  SEVNVGDVVTGEVLAKDDEQQLIVGIDDTGVEGVVPQRELSSSQNFDDIKQGDKLQLVVT 79

Query: 544 -KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
            ++G++       + S+R+        V  +LA  S   E     IT   +++  K G  
Sbjct: 80  SRIGSDKEGGSFLLSSRRLEARK----VWDELAEKSKNGET----IT-ATVSQAVKGGLV 130

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTR 660
           V    GV+GF P S +  D   E  + +   Q ++ +I+   P + R+ LS   +++  +
Sbjct: 131 VDA--GVRGFIPASMIS-DHYVEDLNQFK-NQELELKIIEIDPVANRLILSHKAILQAQK 186

Query: 661 VSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
             E     D +  G +V G V  +T     V +   G   G +    +A   E       
Sbjct: 187 AEEREKLMDTLHEGDIVEGKVARLTNFGAFVDL---GGMDGLVHVSQIA--YERVEKPSD 241

Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           V+K G E   ++L +D + + + LS K +L      +   A      SV+ G V  +++ 
Sbjct: 242 VLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAP---AGSVLEGTVKRLVDF 298

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G FV     + G    S+      A       VG+ ++  +LDV+ +  R+ LS+K
Sbjct: 299 GAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDRKRLALSIK 354



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 38/195 (19%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +HEGDIV G++++ L+  G  V   G  + G VH +++    V  P         D L  
Sbjct: 197  LHEGDIVEGKVAR-LTNFGAFVDLGG--MDGLVHVSQIAYERVEKP--------SDVLK- 244

Query: 1317 YDEGQFVKCKVLEIS-RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               GQ VK KVL +     R +  ++ +L    DG                      IE+
Sbjct: 245  --VGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDG----------------------IEE 280

Query: 1376 LSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
             +P   +++G VK +   G F+ +   ++  V +S ++  ++ +P     +G+ +  +VL
Sbjct: 281  KAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVL 340

Query: 1435 SVEPLSKRVEVTLKT 1449
             V+P  KR+ +++K 
Sbjct: 341  DVDPDRKRLALSIKA 355


>gi|227513320|ref|ZP_03943369.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577]
 gi|227524464|ref|ZP_03954513.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290]
 gi|227083193|gb|EEI18505.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577]
 gi|227088334|gb|EEI23646.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290]
          Length = 413

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           KA   E L+ T   +  G +V+GKV  + +FGA V   GG+  L  +  ++   + KP  
Sbjct: 186 KAEEREKLMDT---LHEGDIVEGKVARLTNFGAFVDL-GGMDGLVHVSQIAYERVEKPSD 241

Query: 542 KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
             KVG E+  +VL V     RI+++ K+TL +    I       +   +  G + ++   
Sbjct: 242 VLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAPAGS---VLEGTVKRLVDF 298

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           G FV  + GV+G    S++  +    P  +  VG+ +K +++   P  +R+ LS 
Sbjct: 299 GAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDRKRLALSI 353



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 141/350 (40%), Gaps = 58/350 (16%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR-IMSSIPASRRINLSFMMKPTRVSE--- 663
           GV+G  P+ EL         +   + Q  K + +++S   S +   SF++   R+     
Sbjct: 49  GVEGVVPQREL-----SSSQNFDDIKQGDKLQLVVTSRIGSDKEGGSFLLSSRRLEARKV 103

Query: 664 -DDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
            D+L    K G  ++  V       +VV    +G+   ++ ++H  + L      +  +K
Sbjct: 104 WDELAEKSKNGETITAKVSQAVKGGLVVDAGVRGFIPASMISDHYVEDLNQFKNQELELK 163

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
                  ++ +D  ++ L+LS K  L    A++       +H   +V G V  +   G F
Sbjct: 164 -------IIEIDPVANRLILSHKAILQAQKAEEREKLMDTLHEGDIVEGKVARLTNFGAF 216

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+    +    S    VGQ V+  +L V+ +  RI+LS+KQ+     
Sbjct: 217 VD-LGGMDGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPW 275

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +EEK                      GSV+EG V    DFG  V  E   
Sbjct: 276 DG--------IEEKAPA-------------------GSVLEGTVKRLVDFGAFV--EVFP 306

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V G      I H  +A  G  ++ G  I+  +LDV    + + LS+K +
Sbjct: 307 GVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDRKRLALSIKAL 356



 Score = 47.4 bits (111), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 13/208 (6%)

Query: 360 TTNWKNDYNQHK--KVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-----VKVGDIYD 412
           + ++  D NQ K  ++  +I+ +DP +  + L+    L   +A         +  GDI  
Sbjct: 145 SDHYVEDLNQFKNQELELKIIEIDPVANRLILSHKAILQAQKAEEREKLMDTLHEGDIV- 203

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
           + KV R+    G  +D+          V +S +A E V K     K G  V+V++L    
Sbjct: 204 EGKVARL-TNFGAFVDLGGMD----GLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDF 258

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
                +  +K +  E           G V++G V  +  FGA V+   GV+ L  +  ++
Sbjct: 259 DRNRISLSIKQTLPEPWDGIEEKAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIA 318

Query: 533 EFEIVKPGKKFKVGAELVFRVLGVKSKR 560
              I  PG   KVG ++  +VL V   R
Sbjct: 319 HEHIATPGDVLKVGEKIKVKVLDVDPDR 346



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 150/356 (42%), Gaps = 39/356 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMS---EFEIVKPGKKF----- 543
           S+V  G VV G+V+A D    ++      GV+ + P   +S    F+ +K G K      
Sbjct: 20  SEVNVGDVVTGEVLAKDDEQQLIVGIDDTGVEGVVPQRELSSSQNFDDIKQGDKLQLVVT 79

Query: 544 -KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
            ++G++       + S+R+        V  +LA  S   E     IT   +++  K G  
Sbjct: 80  SRIGSDKEGGSFLLSSRRLEARK----VWDELAEKSKNGET----IT-AKVSQAVKGGLV 130

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTR 660
           V    GV+GF P S +  D   E  + +   Q ++ +I+   P + R+ LS   +++  +
Sbjct: 131 VDA--GVRGFIPASMIS-DHYVEDLNQFK-NQELELKIIEIDPVANRLILSHKAILQAQK 186

Query: 661 VSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
             E     D +  G +V G V  +T     V +   G   G +    +A   E       
Sbjct: 187 AEEREKLMDTLHEGDIVEGKVARLTNFGAFVDL---GGMDGLVHVSQIA--YERVEKPSD 241

Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           V+K G E   ++L +D + + + LS K +L      +   A      SV+ G V  +++ 
Sbjct: 242 VLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAP---AGSVLEGTVKRLVDF 298

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G FV     + G    S+      A       VG+ ++  +LDV+ +  R+ LS+K
Sbjct: 299 GAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDRKRLALSIK 354



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 38/195 (19%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +HEGDIV G++++ L+  G  V   G  + G VH +++    V  P         D L  
Sbjct: 197  LHEGDIVEGKVAR-LTNFGAFVDLGG--MDGLVHVSQIAYERVEKP--------SDVLK- 244

Query: 1317 YDEGQFVKCKVLEIS-RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
               GQ VK KVL +     R +  ++ +L    DG                      IE+
Sbjct: 245  --VGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDG----------------------IEE 280

Query: 1376 LSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
             +P   +++G VK +   G F+ +   ++  V +S ++  ++ +P     +G+ +  +VL
Sbjct: 281  KAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVL 340

Query: 1435 SVEPLSKRVEVTLKT 1449
             V+P  KR+ +++K 
Sbjct: 341  DVDPDRKRLALSIKA 355


>gi|159899614|ref|YP_001545861.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
            DSM 785]
 gi|159892653|gb|ABX05733.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
          Length = 501

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
            D  G    ++ DL   M + G V +    G F+ +    D  V +S +SD  +ESP    
Sbjct: 90   DEDGTTPRRLADLHAGMELDGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVV 149

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS----RTASQSEINN--LSNLHVGDIVIGQIK 1477
             IG +V  RV SV+P ++R+ +T+++  S    R   + E+NN  L  L  GD+V G + 
Sbjct: 150  QIGDIVKVRVKSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVN 209

Query: 1478 RVESYGLFITI 1488
             +  +G+F+ I
Sbjct: 210  GIAPFGVFVDI 220



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 27/269 (10%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G +T    +G FV    G  G    SE+       P+ +  +G +VK R+ S  P +RRI
Sbjct: 110 GKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRVKSVDPDARRI 169

Query: 651 NLSF--------MMKPTR--VSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK-G 697
           +L+            P R  V+ D L  +K G LV G V+ + P  V V +   G  K G
Sbjct: 170 SLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVDI---GVGKDG 226

Query: 698 TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            +    L+++          +   Y F ++L +D  +  + LS + +     Q+ P    
Sbjct: 227 LVHISELSENRVEKAEDAVTVGQSYTF-RVLEVDTGAQRISLSLRRAK-EDFQERPKAPR 284

Query: 758 H-------IHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 809
                   I P +V+ G V  I   G FV   +GR  G    S+  +G+   +     VG
Sbjct: 285 RREVNLDVIAPGTVLDGKVSGIAPFGAFVDLGVGR-DGLVHISELSEGRVGKVDDVVKVG 343

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSST 838
             V+  +L+V+ ++ RI+L+++     +T
Sbjct: 344 DPVKVRVLEVDPDSKRISLTMRVEEAPTT 372



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 28/247 (11%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLR-PFQDGI--SDKTVDISNDNMQTFIHEGDIVGGRI 1267
             IG  V   V S++ + + + L +R P  +G   + K  +++ND +   +  GD+V G +
Sbjct: 150  QIGDIVKVRVKSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGE-LKPGDLVDGTV 208

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1327
            + I     G+ V IG    G VH +EL    V        E   D ++    GQ    +V
Sbjct: 209  NGIAPF--GVFVDIGVGKDGLVHISELSENRV--------EKAEDAVT---VGQSYTFRV 255

Query: 1328 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1387
            LE+     G   + LSLR +          D       P +    ++ ++P  ++ G V 
Sbjct: 256  LEVDT---GAQRISLSLRRA--------KEDFQERPKAPRRREVNLDVIAPGTVLDGKVS 304

Query: 1388 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
             +   G F+ L    D  V +S LS+G V   +    +G  V  RVL V+P SKR+ +T+
Sbjct: 305  GIAPFGAFVDLGVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTM 364

Query: 1448 KTSDSRT 1454
            +  ++ T
Sbjct: 365  RVEEAPT 371



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 14/174 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++KPG +V G V  +  FG  V    G   L  +  +SE  + K      VG    FRVL
Sbjct: 197 ELKPGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVL 256

Query: 555 GVK--SKRITVTHKKT---------LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
            V   ++RI+++ ++            + +   L   A  T   +  G ++ I   G FV
Sbjct: 257 EVDTGAQRISLSLRRAKEDFQERPKAPRRREVNLDVIAPGT---VLDGKVSGIAPFGAFV 313

Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
               G  G    SEL      +   +  VG  VK R++   P S+RI+L+  ++
Sbjct: 314 DLGVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTMRVE 367



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 20/209 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +D+  GM + GKV +   +G  V    G   L  +  MS+  I  P    ++G  +  RV
Sbjct: 100 ADLHAGMELDGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRV 159

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL-------ITHGWITKIEKHGCFVR 604
             V   ++RI++T +    + +           D+L       +  G +  I   G FV 
Sbjct: 160 KSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVD 219

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS-------FMMK 657
              G  G    SEL  +   +      VGQ    R++     ++RI+LS       F  +
Sbjct: 220 IGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLSLRRAKEDFQER 279

Query: 658 PT----RVSEDDLVKLGSLVSGVVDVVTP 682
           P     R    D++  G+++ G V  + P
Sbjct: 280 PKAPRRREVNLDVIAPGTVLDGKVSGIAP 308


>gi|392551527|ref|ZP_10298664.1| 30S ribosomal protein S1 [Pseudoalteromonas spongiae UST010723-006]
          Length = 555

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 144/346 (41%), Gaps = 30/346 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-K 557
           G  VKG +  +  +GA V   GGV  L  +  M+   +  P +   VG E++ +VL   K
Sbjct: 192 GQEVKGIIKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDK 250

Query: 558 SK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            K R+++  K+       AI   Y E +      G +T +  +GCFV    GV+G    S
Sbjct: 251 DKTRVSLGLKQLGEDPWAAIAGRYPEGSK---LSGRVTNLTDYGCFVEIEEGVEGLVHVS 307

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLGSLV 673
           E+   +    PS + ++G  V+  ++      RRI+L          ++   L   G  V
Sbjct: 308 EMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKANPWQEFARLQNKGDQV 367

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL-LVL 730
           +G +  +T   + +     G   G     HL+D   +    ++V   K G E   + L +
Sbjct: 368 TGKIKSITDFGIFI-----GLEGGIDGLVHLSDISWNTPGEEAVREFKKGDEITAIVLQV 422

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRFLGRL 785
           D E   + L  K        Q+ +D   +++  N   ++V G V  +   G  V  +  +
Sbjct: 423 DPERERISLGVK--------QIEADPFNNYLDANKKGAIVKGKVTEVDAKGATVELIEGV 474

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G+   +     +  D S    VG  V +  + V+ +   I+LS+K
Sbjct: 475 EGYIRVADVAVERTEDASTVLSVGDEVEAKFVGVDRKNRAISLSIK 520



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 21/252 (8%)

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
           G  +S RV ++ + G  +       G V +  +  T    +     N    V   +L +D
Sbjct: 277 GSKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEID 336

Query: 382 PTSRAVGLTL-----NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
              R + L L     NP+     L N+      K+  I D    + ++ G+  L+ +   
Sbjct: 337 EERRRISLGLKQCKANPWQEFARLQNKGDQVTGKIKSITDFGIFIGLEGGIDGLVHLSDI 396

Query: 433 PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
             +TP         EE VR+  KK  E + + +++   R    L    ++A  F   +  
Sbjct: 397 SWNTPG--------EEAVREF-KKGDEITAIVLQVDPERERISLGVKQIEADPFNNYLDA 447

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +   K G +VKGKV  VD+ GA V+   GV+    +  ++            VG E+  +
Sbjct: 448 N---KKGAIVKGKVTEVDAKGATVELIEGVEGYIRVADVAVERTEDASTVLSVGDEVEAK 504

Query: 553 VLGVKSKRITVT 564
            +GV  K   ++
Sbjct: 505 FVGVDRKNRAIS 516



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 136/330 (41%), Gaps = 56/330 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ V G +  + +  A + +   +   L I D A++    PSE+       ++G  +   
Sbjct: 192  GQEVKGIIKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEILVK 244

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  +K+K  + L L+   +   D    I+         EG  + GR++ +     G  V
Sbjct: 245  VLKFDKDKTRVSLGLKQLGE---DPWAAIAGR-----YPEGSKLSGRVTNLTDY--GCFV 294

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            +I   + G VH +E+           +      P    + G  V+  VLEI    R    
Sbjct: 295  EIEEGVEGLVHVSEMD----------WTNKNIHPSKVVNLGDTVEVMVLEIDEERR---- 340

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL G+    ++        P +   ++++      V G +K++T  G FI L 
Sbjct: 341  -----RISL-GLKQCKAN--------PWQEFARLQNKGDQ--VTGKIKSITDFGIFIGLE 384

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS++S +   E   +EF  G  +   VL V+P  +R+ + +K  ++   +  
Sbjct: 385  GGIDGLVHLSDISWNTPGEEAVREFKKGDEITAIVLQVDPERERISLGVKQIEADPFN-- 442

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              N L     G IV G++  V++ G  + +
Sbjct: 443  --NYLDANKKGAIVKGKVTEVDAKGATVEL 470



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 39/211 (18%)

Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVR 813
           A      S + G V N+ + GCFV     + G    S+ +D    ++  SK   +G +V 
Sbjct: 271 AGRYPEGSKLSGRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDTVE 329

Query: 814 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
             +L+++ E  RI+L LKQ  C    A+  QE   L+ K                     
Sbjct: 330 VMVLEIDEERRRISLGLKQ--CK---ANPWQEFARLQNK--------------------- 363

Query: 874 IGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDV 927
            G  + GK+    DFG+ +  E       H     + T  + A    + G  I A +L V
Sbjct: 364 -GDQVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNTPGEEAVREFKKGDEITAIVLQV 422

Query: 928 AKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
                 + L +K +  D F   N+   A KK
Sbjct: 423 DPERERISLGVKQIEADPF---NNYLDANKK 450



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1440
            G V N+T  GCF+ +   ++  V +S +   +      P K   +G  V   VL ++   
Sbjct: 282  GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNLGDTVEVMVLEIDEER 339

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ + LK    +     E   L N   GD V G+IK +  +G+FI +E
Sbjct: 340  RRISLGLKQC--KANPWQEFARLQNK--GDQVTGKIKSITDFGIFIGLE 384


>gi|212556777|gb|ACJ29231.1| Ribosomal protein S1 [Shewanella piezotolerans WP3]
          Length = 555

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 141/345 (40%), Gaps = 20/345 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQSVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E T RL   G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENT-RLT--GRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L      T   +D  +    
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFAERFNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI--KPGYEFDQ- 726
           G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E +  
Sbjct: 364 GDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEDAVAEYKKGDEINAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K +  +      +D       + V   V      G  +     + 
Sbjct: 419 VLSVDPERERISLGVKQTEDDPFNAYLADKKKGVVVNGVVTAVD---AKGVTIELAETVE 475

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+   S     +  D S  Y VG  V S  + V+ +   I+LS++
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDKVESKFMGVDRKNRTISLSIR 520



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 100/471 (21%), Positives = 185/471 (39%), Gaps = 69/471 (14%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           +PG +V G V+ +++   +V    G+K+  P+P   +F+      +  VG  +   +  V
Sbjct: 19  RPGSIVTGVVVRIENGTVLVD--AGLKSESPIP-AEQFKNASGELEISVGDTVHVALDSV 75

Query: 557 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +       ++ +K        +L    E  + +I    I   +  G F    NG++ F P
Sbjct: 76  EDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIG---IINGKVKGGFTVELNGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            S + + P  + + + +     +V+K  +  +++  SRR  +       R +  + ++ G
Sbjct: 133 GSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEG 192

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
             V G+V  +T     V +   G   G +    +A   ++H +    ++  G E + ++L
Sbjct: 193 QSVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINVKVL 246

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNIIETGCFVRFLG 783
             D E + + L  K        QL  D     S  +P N+ + G V N+ + GCFV    
Sbjct: 247 KYDRERTRVSLGLK--------QLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIEE 298

Query: 784 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ   +  D  
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWD-- 355

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                                     + E F  G  + GK+    DFG+ +  +   D  
Sbjct: 356 -------------------------DFAERFNKGDKVSGKIKSITDFGIFIGLDGGIDGL 390

Query: 902 GFITHHQLAG------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             ++     G      A  + G  I A +L V      + L +K    D F
Sbjct: 391 VHLSDISWNGTGEDAVAEYKKGDEINAVVLSVDPERERISLGVKQTEDDPF 441


>gi|55736656|gb|AAV60298.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
 gi|55738547|gb|AAV62188.1| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
          Length = 417

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 169/387 (43%), Gaps = 44/387 (11%)

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GV 522
           RVRI G+  LE       + + FE L+ + S+V  G VV  +VI+VD+  A V   G G+
Sbjct: 4   RVRI-GWLLLEDF----FRMNEFEELLNSVSEVSTGDVVTAEVISVDNDQANVVIEGTGI 58

Query: 523 KALCPLPHMSE------FEIVKPGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLA 575
           + +     ++        ++VK G+  +V   LV R V+G  +  +T    K  ++++ A
Sbjct: 59  EGVLTRRELTNDRDANVADLVKDGETLEV---LVLRQVVGKDTDTVTYLVSKKRLEARKA 115

Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
                    + +   G  T+  K G  V F  G++GF P S +  D     ++   VGQ 
Sbjct: 116 WDKLVGREEEVVTVKG--TRAVKGGLSVEF-EGLRGFIPASMI--DTRFVRNTEQFVGQE 170

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
              +I    PA  R    F++    V E + ++    V   ++V    +VV   +A+  S
Sbjct: 171 FDAKIKEVDPAENR----FILSRREVVEAEAIEARKEVFSKLEV---GSVVTGKVARLTS 223

Query: 696 KGTIPTEHLADHLEHATVM--------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLI 746
            G        D L H T +        KSV+  G E + ++L +D E+  + LS K +  
Sbjct: 224 FGAFIDLGGVDGLVHVTELSHERNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTP 283

Query: 747 NSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
                 P D     +    V+ G V  + + G FV  L  + G    S+    +  +   
Sbjct: 284 G-----PWDGVEQKLAAGDVIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKD 338

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLK 831
              VGQ V   +L+VN++  R++LS+K
Sbjct: 339 VLSVGQDVTVKVLEVNADAERVSLSIK 365



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 169/418 (40%), Gaps = 59/418 (14%)

Query: 576 ILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           +L+S +E +T  ++T   I+        V    G++G   R EL  D     + +   G+
Sbjct: 24  LLNSVSEVSTGDVVTAEVISVDNDQANVVIEGTGIEGVLTRRELTNDRDANVADLVKDGE 83

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
            ++  ++  +       +++++   R+          LV    +VVT        +  G 
Sbjct: 84  TLEVLVLRQVVGKDTDTVTYLVSKKRLEARK--AWDKLVGREEEVVTVKGT--RAVKGGL 139

Query: 695 S------KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 747
           S      +G IP    A  ++   V  +    G EFD ++  +D   +  +LS +  +  
Sbjct: 140 SVEFEGLRGFIP----ASMIDTRFVRNTEQFVGQEFDAKIKEVDPAENRFILSRREVVEA 195

Query: 748 SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
            A +   +  S +   SVV G V  +   G F+  LG + G    ++    +        
Sbjct: 196 EAIEARKEVFSKLEVGSVVTGKVARLTSFGAFID-LGGVDGLVHVTELSHERNVSPKSVV 254

Query: 807 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
            VG  +   +L ++ E GR++LSLK +     D         +E+K+A            
Sbjct: 255 SVGDEIEVKVLAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA----------- 295

Query: 867 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSV 919
                   G VIEGKV    DFG  V  E    + G +   Q++   VE+       G  
Sbjct: 296 --------GDVIEGKVKRLTDFGGFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQD 345

Query: 920 IQAAILDV-AKAERLVDLSLKTVF---IDRFREANSNRQAQKKKRKREASKDLGVHQT 973
           +   +L+V A AER V LS+K +     +   E N  RQ++ ++ KR+  +D  + +T
Sbjct: 346 VTVKVLEVNADAER-VSLSIKALEERPANAEGENNEKRQSRPRRPKRQEKRDYELPET 402



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 34/203 (16%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G +V G+++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 211  GSVVTGKVARLTSF--GAFIDLG-GVDGLVHVTELSH-----------ERNVSPKSVVSV 256

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 257  GDEIEVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 296

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 297  DVIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNAD 356

Query: 1440 SKRVEVTLKTSDSRTASQSEINN 1462
            ++RV +++K  + R A+    NN
Sbjct: 357  AERVSLSIKALEERPANAEGENN 379



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L    +V G V  +TS G FI L   +D  V ++ LS     SP+    +G  +  +VL+
Sbjct: 208  LEVGSVVTGKVARLTSFGAFIDLG-GVDGLVHVTELSHERNVSPKSVVSVGDEIEVKVLA 266

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 267  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGGFVEV 315


>gi|78188548|ref|YP_378886.1| 30S ribosomal protein S1 [Chlorobium chlorochromatii CaD3]
 gi|78170747|gb|ABB27843.1| SSU ribosomal protein S1P [Chlorobium chlorochromatii CaD3]
          Length = 592

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 143/355 (40%), Gaps = 42/355 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +  ++   +   V
Sbjct: 213 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVV 271

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           +G    SKR+++  K+        I   Y   +      G +  I  +G FV    G++G
Sbjct: 272 VGFDENSKRVSLGMKQLESHPWENIEIKYPVGSK---AQGRVVSITDYGAFVEIEKGIEG 328

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               SE+      + P     +GQ V+C I++      +++LS      RVSED  + L 
Sbjct: 329 LVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKEHTKLSLSM----KRVSEDPWIALS 384

Query: 670 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
                 S+  G +  +T   V V +       G     H++D      + H +    ++K
Sbjct: 385 EKYIENSIHKGTISNITDFGVFVEL-----ESGVDGLVHISDLSWTKKIRHPS---ELVK 436

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH----GYVCNIIE 774
              E + ++L  D  +  + L  K       Q  P           V     G +  IIE
Sbjct: 437 KNQELEVKVLKFDVHARRIALGHK-------QINPDPWGEFEQKYAVGAETPGQISQIIE 489

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            G  V   G + GF P S  + G   D+  ++ +G  +   +++ + E  RI LS
Sbjct: 490 KGVIVILPGDVDGFVPVSHLLQGGVKDIHSSFKIGDELPLRVIEFDKENKRIILS 544



 Score = 44.7 bits (104), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 5/119 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E + ++   M+++G VKN+T  G F+ L   LD  V +++++ G +  P +   + + + 
Sbjct: 210  EMLANIKVGMVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVELDQPIK 268

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              V+  +  SKRV + +K  +S      EI       VG    G++  +  YG F+ IE
Sbjct: 269  VVVVGFDENSKRVSLGMKQLESHPWENIEI----KYPVGSKAQGRVVSITDYGAFVEIE 323



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 99/245 (40%), Gaps = 44/245 (17%)

Query: 718 IKPGYEFDQLLVLDNE---------SSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHG 767
           +KP  +FD L+    E         + N+++S K  L  + A +     ++I    V+ G
Sbjct: 164 VKPVRDFDALVGQTMEFRVVKINPVTQNIVVSHKVILEEAYAARREEMLANIKVGMVLEG 223

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            V NI + G FV  LG L G    +    G+    S+   + Q ++  ++  +  + R++
Sbjct: 224 TVKNITDFGIFVD-LGGLDGLVHITDITWGRINHPSEVVELDQPIKVVVVGFDENSKRVS 282

Query: 828 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 887
           L +KQ                       L+S      E+K    + +GS  +G+V    D
Sbjct: 283 LGMKQ-----------------------LESHPWENIEIK----YPVGSKAQGRVVSITD 315

Query: 888 FGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
           +G  V  E+      H     +  H +  G  V  G  ++  IL++ K    + LS+K V
Sbjct: 316 YGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKEHTKLSLSMKRV 375

Query: 942 FIDRF 946
             D +
Sbjct: 376 SEDPW 380


>gi|82751072|ref|YP_416813.1| 30S ribosomal protein S1 [Staphylococcus aureus RF122]
 gi|82656603|emb|CAI81027.1| 30S ribosomal protein S1 [Staphylococcus aureus RF122]
          Length = 391

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTRHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 ---LGSL-----VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
              L SL     + G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNESDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 166/401 (41%), Gaps = 90/401 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+    ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLS-TRHIDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +   D+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNESDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEA 583
             ++LG+  +++R++++ K TL     V+S  +   +Y E+
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLES 370



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+ + ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNESDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298


>gi|254435439|ref|ZP_05048946.1| ribosomal protein S1 [Nitrosococcus oceani AFC27]
 gi|207088550|gb|EDZ65822.1| ribosomal protein S1 [Nitrosococcus oceani AFC27]
          Length = 580

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 46/359 (12%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G  VKG V  +  +GA V   GG+  L  +  MS   I  P +   +G ++  +V
Sbjct: 206 SSLEEGKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHPSEVVNIGDDITVQV 264

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    + +R+++  K+        +   Y + T RL   G +T +  +GCFV    GV+G
Sbjct: 265 LKFDRERQRVSLGLKQMGEDPWKDLARRYLDGT-RLF--GKVTNVTDYGCFVEIEEGVEG 321

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPT-----RVS 662
               SE+   +    PS M  VG+ V+  ++      RRI+L     +  P      R +
Sbjct: 322 LVHMSEMDWTNKNIHPSKMVQVGEEVEVMVLDIDEERRRISLGMKQCLPNPWEEFAHRYN 381

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
           +DD       V+G +  +T   + V     G   G     HL+D +  +   + +I+   
Sbjct: 382 KDD------RVAGEIKSITDFGIFV-----GLEGGIDGLVHLSD-ISWSASGEEIIRDYK 429

Query: 723 EFDQ----LLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHP---NSVVHGYVCNII 773
           + DQ    +L +D E   + L  K        QL  D  +S+I      S+V G V  + 
Sbjct: 430 KGDQVEAVVLAIDPERERISLGVK--------QLEDDPFSSYIATCPKGSIVKGIVKVVD 481

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLK 831
             G  +     + G   R+  +  +R D ++T   VG S+ +    ++ +   ITLS++
Sbjct: 482 TRGAVIELAEGVEGHL-RASEIARERIDDARTSLNVGDSIEAKFTGIDRKNRVITLSVR 539


>gi|374585971|ref|ZP_09659063.1| SSU ribosomal protein S1P [Leptonema illini DSM 21528]
 gi|373874832|gb|EHQ06826.1| SSU ribosomal protein S1P [Leptonema illini DSM 21528]
          Length = 388

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+++ G VV+G V ++  FGA V   GGV+ L PL  +S   +  P +  K G E+  +V
Sbjct: 187 SNLEEGSVVQGTVTSLRDFGAFVDIGGGVEGLIPLSELSYKRVNHPSEMLKSGEEIRVKV 246

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + V  K  RIT++ K+ L ++       +       +T   +  I   G FV+  +G +G
Sbjct: 247 MSVNWKEDRITLSLKE-LQQNPWQGALPFQPGELLAVT---VESIRPFGVFVKLPDGFRG 302

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
             P SE G+  G      +  GQ +K  IM      ++I+LS
Sbjct: 303 LIPASETGVPRGTPFDKEFQRGQQLKAVIMEINREQQKISLS 344



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           + L+++    N+++S K  L    Q+      S++   SVV G V ++ + G FV   G 
Sbjct: 155 KFLIIEAPDRNIVVSHKQYLETERQRHKETMISNLEEGSVVQGTVTSLRDFGAFVDIGGG 214

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           + G  P S+    +    S+    G+ +R  ++ VN +  RITLSLK+
Sbjct: 215 VEGLIPLSELSYKRVNHPSEMLKSGEEIRVKVMSVNWKEDRITLSLKE 262


>gi|418565368|ref|ZP_13129775.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21264]
 gi|371974037|gb|EHO91379.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21264]
          Length = 391

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N  + G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDDIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 168/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +D   G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDDIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373


>gi|389843910|ref|YP_006345990.1| 30S ribosomal protein S1 [Mesotoga prima MesG1.Ag.4.2]
 gi|387858656|gb|AFK06747.1| ribosomal protein S1 [Mesotoga prima MesG1.Ag.4.2]
          Length = 571

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 161/395 (40%), Gaps = 17/395 (4%)

Query: 446 AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT-GILKASAFEGLVFTHSDVKPGMVVKG 504
           A++ V +LE+ Y  G  + V ++     EG +T    +  A + +       + G  + G
Sbjct: 58  ADQLVNELEE-YNVGDKIEVMVIKTNEEEGRSTVSEKRVHARQAVSKVEKAYREGKAIDG 116

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           K+++    G  V+    V A  P         ++ G     G  L F+V+  K +R  + 
Sbjct: 117 KIVSETKAGYNVRLVKTVPAFLPGSESG----IRKGDPAPEGT-LKFKVIRFKRQRNGIN 171

Query: 565 HKKTLVKSKLAILSSYAEATD-RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 623
              +L   +   + +Y E  +      G +  I+  G FV+  + V    P SE+  DP 
Sbjct: 172 VVVSLRAFQEEAIKAYFETIEVGQELEGTVESIKNFGAFVKLNDNVTALIPASEMSWDPS 231

Query: 624 CEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVVT 681
              S +   GQ V+ +++    A ++I+LS   M +    +  D  ++ S V G V  +T
Sbjct: 232 VRISDLLKPGQTVRTKVIGVDEAEKKISLSLKQMTEDPWSTLKDRYEVDSTVVGTVKNIT 291

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLS 740
           P    V  +  G       +E    +++    +KSV++ G E    +  ++ E   L LS
Sbjct: 292 PFGFFVS-LEPGVEGLVHISEVFWGNIKKD--LKSVVEVGDEVKVTIKEINEEKRTLSLS 348

Query: 741 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
            + ++ +  Q +           ++      ++ TG  +     ++GF P S+       
Sbjct: 349 YREAMGDPWQNI---GDKYKEGDILKAKTAKVLPTGVILELEEYVSGFVPVSEVSWNFVD 405

Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            +      G  +   IL ++S   R+ LS+KQ+  
Sbjct: 406 RIEDVVKEGDEIEVKILSIDSVNRRMRLSIKQAYS 440


>gi|159897034|ref|YP_001543281.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
           DSM 785]
 gi|159890073|gb|ABX03153.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
          Length = 415

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG V  G+V ++  FGA V   GG   L  L  +S   +  P +  KVG  +   +L 
Sbjct: 231 LEPGAVRTGRVTSLCDFGAFVDI-GGADGLVHLSELSWSRVKHPEEVLKVGDAVSVYILS 289

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    KRI ++ K+T  +    +   Y          G +T++   G FVR  +G++G  
Sbjct: 290 VDEDKKRIALSIKRTQAEPWTTVTDRYQIGQS---VSGVVTQLTAFGAFVRLEDGIEGLI 346

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
             SE+  +    P  + + G  V  RI+   P  +RI LS
Sbjct: 347 HISEMSDERIQHPRDVINEGDSVSARIIRIDPTRKRIGLS 386



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 21/171 (12%)

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ +  K++EI+R+      + LS R ++  +  +    L          LEK+E   P 
Sbjct: 191  GQTLPLKIIEINRS---RNRLILSERQAVQEVRDSRKDQL----------LEKLE---PG 234

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +  G V ++   G F+ +    D  V LS LS   V+ PE+   +G  V+  +LSV+  
Sbjct: 235  AVRTGRVTSLCDFGAFVDIG-GADGLVHLSELSWSRVKHPEEVLKVGDAVSVYILSVDED 293

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             KR+ +++K    RT ++          +G  V G + ++ ++G F+ +E+
Sbjct: 294  KKRIALSIK----RTQAEPWTTVTDRYQIGQSVSGVVTQLTAFGAFVRLED 340


>gi|449965078|ref|ZP_21811693.1| 30S ribosomal protein S1 [Streptococcus mutans 15VF2]
 gi|449171867|gb|EMB74514.1| 30S ribosomal protein S1 [Streptococcus mutans 15VF2]
          Length = 399

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +V+ VD   A +   G GV+A+  L  ++        + VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         D +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGDVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA------SRRIN 651
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    P+      SRR  
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQQFEAKIKEIDPSENRFILSRRDV 175

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           +       R      + +G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEAAAAKAREEVFSRLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHITELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SRLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHITELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +  +R  +  SN   RQ++ +++KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALE-ERPAQDKSNGEKRQSRPRRQKRQDKRDYELPET 384



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 18/174 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQD 357



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 34/196 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHITELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTA 1455
             +RV +++K  + R A
Sbjct: 340  DERVSLSIKALEERPA 355



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 298


>gi|400290418|ref|ZP_10792445.1| 30S ribosomal protein S1 [Streptococcus ratti FA-1 = DSM 20564]
 gi|399921209|gb|EJN94026.1| 30S ribosomal protein S1 [Streptococcus ratti FA-1 = DSM 20564]
          Length = 399

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 157/363 (43%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +V+ VD   A +   G GV+A+  L  ++        ++VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---- 653
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    PA  R  LS    
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQEFEAKIKEVDPAENRFILSRRDV 175

Query: 654 FMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                    ++   KL  G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEAAAEEARKEVFSKLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHVTELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 39/226 (17%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SKLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHVTELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN--RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +     ++ NS   RQ++ ++ KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALEERPAQDENSGEKRQSRPRRPKRQEKQDYELPET 384



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHVTELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D+
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQDE 358



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 34/196 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHVTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTA 1455
             +RV +++K  + R A
Sbjct: 340  DERVSLSIKALEERPA 355



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLVHVTELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 298


>gi|24379626|ref|NP_721581.1| 30S ribosomal protein S1 [Streptococcus mutans UA159]
 gi|290580374|ref|YP_003484766.1| ribosomal protein S1 [Streptococcus mutans NN2025]
 gi|387786028|ref|YP_006251124.1| 30S ribosomal protein S1 [Streptococcus mutans LJ23]
 gi|397649844|ref|YP_006490371.1| 30S ribosomal protein S1 [Streptococcus mutans GS-5]
 gi|449864396|ref|ZP_21778296.1| 30S ribosomal protein S1 [Streptococcus mutans U2B]
 gi|449870599|ref|ZP_21780771.1| 30S ribosomal protein S1 [Streptococcus mutans 8ID3]
 gi|449876035|ref|ZP_21782538.1| 30S ribosomal protein S1 [Streptococcus mutans S1B]
 gi|449880706|ref|ZP_21784024.1| 30S ribosomal protein S1 [Streptococcus mutans SA38]
 gi|449886172|ref|ZP_21786052.1| 30S ribosomal protein S1 [Streptococcus mutans SA41]
 gi|449893917|ref|ZP_21789001.1| 30S ribosomal protein S1 [Streptococcus mutans SF12]
 gi|449897913|ref|ZP_21790272.1| 30S ribosomal protein S1 [Streptococcus mutans R221]
 gi|449902877|ref|ZP_21791808.1| 30S ribosomal protein S1 [Streptococcus mutans M230]
 gi|449908907|ref|ZP_21794047.1| 30S ribosomal protein S1 [Streptococcus mutans OMZ175]
 gi|449914985|ref|ZP_21795962.1| 30S ribosomal protein S1 [Streptococcus mutans 15JP3]
 gi|449921675|ref|ZP_21799070.1| 30S ribosomal protein S1 [Streptococcus mutans 1SM1]
 gi|449924438|ref|ZP_21799629.1| 30S ribosomal protein S1 [Streptococcus mutans 4SM1]
 gi|449932440|ref|ZP_21802861.1| 30S ribosomal protein S1 [Streptococcus mutans 3SN1]
 gi|449941360|ref|ZP_21805487.1| 30S ribosomal protein S1 [Streptococcus mutans 11A1]
 gi|449950128|ref|ZP_21808105.1| 30S ribosomal protein S1 [Streptococcus mutans 11SSST2]
 gi|449958202|ref|ZP_21809650.1| 30S ribosomal protein S1 [Streptococcus mutans 4VF1]
 gi|449969822|ref|ZP_21813440.1| 30S ribosomal protein S1 [Streptococcus mutans 2VS1]
 gi|449979489|ref|ZP_21816725.1| 30S ribosomal protein S1 [Streptococcus mutans 5SM3]
 gi|449984941|ref|ZP_21819412.1| 30S ribosomal protein S1 [Streptococcus mutans NFSM2]
 gi|450000144|ref|ZP_21824933.1| 30S ribosomal protein S1 [Streptococcus mutans N29]
 gi|450004741|ref|ZP_21826204.1| 30S ribosomal protein S1 [Streptococcus mutans NMT4863]
 gi|450009726|ref|ZP_21828252.1| 30S ribosomal protein S1 [Streptococcus mutans A19]
 gi|450023082|ref|ZP_21830346.1| 30S ribosomal protein S1 [Streptococcus mutans U138]
 gi|450028409|ref|ZP_21832115.1| 30S ribosomal protein S1 [Streptococcus mutans G123]
 gi|450034777|ref|ZP_21834631.1| 30S ribosomal protein S1 [Streptococcus mutans M21]
 gi|450039922|ref|ZP_21836494.1| 30S ribosomal protein S1 [Streptococcus mutans T4]
 gi|450045143|ref|ZP_21838291.1| 30S ribosomal protein S1 [Streptococcus mutans N34]
 gi|450050281|ref|ZP_21840200.1| 30S ribosomal protein S1 [Streptococcus mutans NFSM1]
 gi|450063960|ref|ZP_21845162.1| 30S ribosomal protein S1 [Streptococcus mutans NLML5]
 gi|450067070|ref|ZP_21846402.1| 30S ribosomal protein S1 [Streptococcus mutans NLML9]
 gi|450070834|ref|ZP_21847815.1| 30S ribosomal protein S1 [Streptococcus mutans M2A]
 gi|450087114|ref|ZP_21854100.1| 30S ribosomal protein S1 [Streptococcus mutans NV1996]
 gi|450092168|ref|ZP_21855793.1| 30S ribosomal protein S1 [Streptococcus mutans W6]
 gi|450097721|ref|ZP_21857641.1| 30S ribosomal protein S1 [Streptococcus mutans SF1]
 gi|450105141|ref|ZP_21859653.1| 30S ribosomal protein S1 [Streptococcus mutans SF14]
 gi|450109703|ref|ZP_21861643.1| 30S ribosomal protein S1 [Streptococcus mutans SM6]
 gi|450125414|ref|ZP_21867649.1| 30S ribosomal protein S1 [Streptococcus mutans U2A]
 gi|450131825|ref|ZP_21869764.1| 30S ribosomal protein S1 [Streptococcus mutans NLML8]
 gi|450136943|ref|ZP_21871321.1| 30S ribosomal protein S1 [Streptococcus mutans NLML1]
 gi|450144788|ref|ZP_21874214.1| 30S ribosomal protein S1 [Streptococcus mutans 1ID3]
 gi|450147420|ref|ZP_21875005.1| 30S ribosomal protein S1 [Streptococcus mutans 14D]
 gi|450159476|ref|ZP_21879446.1| 30S ribosomal protein S1 [Streptococcus mutans 66-2A]
 gi|450166088|ref|ZP_21882154.1| 30S ribosomal protein S1 [Streptococcus mutans B]
 gi|450169078|ref|ZP_21882810.1| 30S ribosomal protein S1 [Streptococcus mutans SM4]
 gi|450175401|ref|ZP_21885134.1| 30S ribosomal protein S1 [Streptococcus mutans SM1]
 gi|450180117|ref|ZP_21887044.1| 30S ribosomal protein S1 [Streptococcus mutans 24]
 gi|24377577|gb|AAN58887.1|AE014956_8 putative ribosomal protein S1; sequence specific DNA-binding
           protein [Streptococcus mutans UA159]
 gi|254997273|dbj|BAH87874.1| putative ribosomal protein S1 [Streptococcus mutans NN2025]
 gi|379132429|dbj|BAL69181.1| 30S ribosomal protein S1 [Streptococcus mutans LJ23]
 gi|392603413|gb|AFM81577.1| 30S ribosomal protein S1 [Streptococcus mutans GS-5]
 gi|449150020|gb|EMB53797.1| 30S ribosomal protein S1 [Streptococcus mutans 1ID3]
 gi|449151972|gb|EMB55689.1| 30S ribosomal protein S1 [Streptococcus mutans 11A1]
 gi|449153598|gb|EMB57255.1| 30S ribosomal protein S1 [Streptococcus mutans NLML8]
 gi|449156507|gb|EMB59976.1| 30S ribosomal protein S1 [Streptococcus mutans 8ID3]
 gi|449156915|gb|EMB60372.1| 30S ribosomal protein S1 [Streptococcus mutans 1SM1]
 gi|449157122|gb|EMB60571.1| 30S ribosomal protein S1 [Streptococcus mutans 15JP3]
 gi|449161411|gb|EMB64605.1| 30S ribosomal protein S1 [Streptococcus mutans 3SN1]
 gi|449162689|gb|EMB65812.1| 30S ribosomal protein S1 [Streptococcus mutans 4SM1]
 gi|449167328|gb|EMB70215.1| 30S ribosomal protein S1 [Streptococcus mutans 11SSST2]
 gi|449170181|gb|EMB72909.1| 30S ribosomal protein S1 [Streptococcus mutans 4VF1]
 gi|449173826|gb|EMB76362.1| 30S ribosomal protein S1 [Streptococcus mutans 2VS1]
 gi|449178021|gb|EMB80303.1| 30S ribosomal protein S1 [Streptococcus mutans 5SM3]
 gi|449179875|gb|EMB82066.1| 30S ribosomal protein S1 [Streptococcus mutans NFSM2]
 gi|449186036|gb|EMB87883.1| 30S ribosomal protein S1 [Streptococcus mutans N29]
 gi|449189310|gb|EMB90977.1| 30S ribosomal protein S1 [Streptococcus mutans NMT4863]
 gi|449190625|gb|EMB92179.1| 30S ribosomal protein S1 [Streptococcus mutans A19]
 gi|449193784|gb|EMB95154.1| 30S ribosomal protein S1 [Streptococcus mutans U138]
 gi|449195494|gb|EMB96808.1| 30S ribosomal protein S1 [Streptococcus mutans G123]
 gi|449196303|gb|EMB97588.1| 30S ribosomal protein S1 [Streptococcus mutans M21]
 gi|449199815|gb|EMC00868.1| 30S ribosomal protein S1 [Streptococcus mutans T4]
 gi|449200900|gb|EMC01918.1| 30S ribosomal protein S1 [Streptococcus mutans N34]
 gi|449202899|gb|EMC03788.1| 30S ribosomal protein S1 [Streptococcus mutans NFSM1]
 gi|449204080|gb|EMC04898.1| 30S ribosomal protein S1 [Streptococcus mutans NLML5]
 gi|449208504|gb|EMC09099.1| 30S ribosomal protein S1 [Streptococcus mutans NLML9]
 gi|449213375|gb|EMC13713.1| 30S ribosomal protein S1 [Streptococcus mutans M2A]
 gi|449218513|gb|EMC18519.1| 30S ribosomal protein S1 [Streptococcus mutans NV1996]
 gi|449218515|gb|EMC18520.1| 30S ribosomal protein S1 [Streptococcus mutans W6]
 gi|449222440|gb|EMC22168.1| 30S ribosomal protein S1 [Streptococcus mutans SF1]
 gi|449224742|gb|EMC24366.1| 30S ribosomal protein S1 [Streptococcus mutans SF14]
 gi|449226059|gb|EMC25624.1| 30S ribosomal protein S1 [Streptococcus mutans SM6]
 gi|449232484|gb|EMC31595.1| 30S ribosomal protein S1 [Streptococcus mutans U2A]
 gi|449235987|gb|EMC34925.1| 30S ribosomal protein S1 [Streptococcus mutans NLML1]
 gi|449236823|gb|EMC35722.1| 30S ribosomal protein S1 [Streptococcus mutans 14D]
 gi|449239907|gb|EMC38606.1| 30S ribosomal protein S1 [Streptococcus mutans B]
 gi|449241134|gb|EMC39778.1| 30S ribosomal protein S1 [Streptococcus mutans 66-2A]
 gi|449246769|gb|EMC45065.1| 30S ribosomal protein S1 [Streptococcus mutans SM1]
 gi|449247896|gb|EMC46165.1| 30S ribosomal protein S1 [Streptococcus mutans SM4]
 gi|449248599|gb|EMC46836.1| 30S ribosomal protein S1 [Streptococcus mutans 24]
 gi|449252727|gb|EMC50699.1| 30S ribosomal protein S1 [Streptococcus mutans SA38]
 gi|449253111|gb|EMC51074.1| 30S ribosomal protein S1 [Streptococcus mutans S1B]
 gi|449254818|gb|EMC52716.1| 30S ribosomal protein S1 [Streptococcus mutans SA41]
 gi|449255650|gb|EMC53497.1| 30S ribosomal protein S1 [Streptococcus mutans SF12]
 gi|449260479|gb|EMC57978.1| 30S ribosomal protein S1 [Streptococcus mutans R221]
 gi|449262168|gb|EMC59625.1| 30S ribosomal protein S1 [Streptococcus mutans M230]
 gi|449262308|gb|EMC59762.1| 30S ribosomal protein S1 [Streptococcus mutans OMZ175]
 gi|449264820|gb|EMC62153.1| 30S ribosomal protein S1 [Streptococcus mutans U2B]
          Length = 399

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +V+ VD   A +   G GV+A+  L  ++        + VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         D +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGDVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA------SRRIN 651
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    P+      SRR  
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQQFEAKIKEIDPSENRFILSRRDV 175

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           +       R      + +G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEAAAAKAREEVFSRLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHITELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SRLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHITELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +  +R  +  SN   RQ++ +++KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALE-ERPAQDESNGEKRQSRPRRQKRQDKRDYELPET 384



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D+
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQDE 358



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHITELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTASQSEIN 1461
             +RV +++K  + R A Q E N
Sbjct: 340  DERVSLSIKALEERPA-QDESN 360



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 298


>gi|384421815|ref|YP_005631174.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum str. Chicago]
 gi|291059681|gb|ADD72416.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 829

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 25/220 (11%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV----KPGKKFKVGAELVFRVLG- 555
           VVKG+V  +  FGA ++   G++ L    H+SEF  V    KP    K+G E+   +LG 
Sbjct: 547 VVKGRVTKIADFGAFIELAEGIEGLA---HISEFSWVKKTSKPSDMVKIGDEVECMILGY 603

Query: 556 -VKSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
            +++ R+++  K+        I + Y   A  T R++      K+   G F+    G+ G
Sbjct: 604 DIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIV------KVTNAGAFIEMEEGIDG 657

Query: 612 FAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
           F    +L       P+     VG+ ++C ++   P +RRI L        P +V   +  
Sbjct: 658 FLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA-NAY 716

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            +GS V G V  VT   + V V   G  +G +  +HL ++
Sbjct: 717 GVGSTVEGEVSSVTDFGIFVRV--PGGVEGLVRKQHLVEN 754



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 144/349 (41%), Gaps = 39/349 (11%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSK 559
           V G V +  SFGA +   GG   L  +  MS   + +P +  K G  +  +V  L    K
Sbjct: 463 VSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 521

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           RI ++ K       L   + +    D  +  G +TKI   G F+    G++G A  SE  
Sbjct: 522 RINLSLKHFQPDPWLEFENKFG-VND--VVKGRVTKIADFGAFIELAEGIEGLAHISEFS 578

Query: 620 -LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSG 675
            +    +PS M  +G  V+C I+     + R++L        P    E            
Sbjct: 579 WVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRR 638

Query: 676 VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +V V    A +         ++V    + K T P +H              ++ G E + 
Sbjct: 639 IVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADH-------------ELEVGKEIEC 685

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           +++  D ++  + L  K  L ++  Q+ ++A  +   S V G V ++ + G FVR  G +
Sbjct: 686 MVIECDPQARRIRLGVK-QLSDNPWQVFANAYGV--GSTVEGEVSSVTDFGIFVRVPGGV 742

Query: 786 TGFAPRSKAV---DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G   +   V   DG   +  + Y VG  V++ I+D+N +  ++  S++
Sbjct: 743 EGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVR 791



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G VK+ TS G FI L    D  + ++++S G+V  P +    G+ +  +V+ ++   K
Sbjct: 463  VSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 521

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ ++LK        + E    +   V D+V G++ ++  +G FI +
Sbjct: 522  RINLSLKHFQPDPWLEFE----NKFGVNDVVKGRVTKIADFGAFIEL 564


>gi|289208391|ref|YP_003460457.1| 30S ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
 gi|288944022|gb|ADC71721.1| ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
          Length = 556

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 146/352 (41%), Gaps = 34/352 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G VVKG V  +  +GA +   GG+  L  +  M+   +  P    ++G E+  +VL
Sbjct: 188 NLQEGAVVKGIVKNLTDYGAFLDL-GGIDGLLHITDMAWKRVKHPSDVVEIGQEVEVKVL 246

Query: 555 GVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               +R+ V+   K L +     ++       R+   G +T I  +GCFV   +GV+G  
Sbjct: 247 KFDRERMRVSLGLKQLGEDPWENITRRYPTGTRIF--GKVTNITDYGCFVEIEDGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV---KL 669
             SE+   +    P  +  +G  V+  I+      RRI+L  M +      DD       
Sbjct: 305 HVSEMDWTNKNVNPGKVVAIGDEVEVMILDLDEERRRISLG-MKQCQSNPWDDFAANHNR 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  V G +  +T   V V     G   G     HL+D   H    +++   K G E +  
Sbjct: 364 GEKVRGQIKSITDFGVFV-----GLDGGIDGLIHLSDLSWHEAGEEAIRNFKKGDEVEAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVR 780
           +L +D E   + L  K        QL  D      A H    S+V G V  +      + 
Sbjct: 419 VLSVDPERERISLGLK--------QLDRDPFSNFVAEHTK-GSIVKGTVKEVDAKAAVIE 469

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLK 831
               + G   R+  +   R + ++T   VG+ V +  + V+ +T  I+LS+K
Sbjct: 470 LADGIDGIL-RAADISQDRVEDARTVLNVGEEVEAKFMGVDKKTRAISLSIK 520



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 146/375 (38%), Gaps = 45/375 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L+ +QEG V+   VK++ D+G  L  G     G L   ++A    ++    V+ G  ++ 
Sbjct: 186 LKNLQEGAVVKGIVKNLTDYGAFLDLG--GIDGLLHITDMAWKRVKHPSDVVEIGQEVEV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            V   DR R  V      L  DP    + +T+            G  +  +V +I + G 
Sbjct: 244 KVLKFDRERMRVSLGLKQLGEDP---WENITRRYP--------TGTRIFGKVTNITDYGC 292

Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----N 392
            +       G V +  +  T    N         +V   IL +D   R + L +     N
Sbjct: 293 FVEIEDGVEGLVHVSEMDWTNKNVNPGKVVAIGDEVEVMILDLDEERRRISLGMKQCQSN 352

Query: 393 PY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
           P+      HNR      ++  I D    V +D G+  L+ +          ++  +  EE
Sbjct: 353 PWDDFAANHNRGEKVRGQIKSITDFGVFVGLDGGIDGLIHLSD--------LSWHEAGEE 404

Query: 449 EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
            +R   KK  E   V + +   R    L    L    F   V  H+    G +VKG V  
Sbjct: 405 AIRNF-KKGDEVEAVVLSVDPERERISLGLKQLDRDPFSNFVAEHT---KGSIVKGTVKE 460

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
           VD+  A+++   G+  +     +S+  +        VG E+  + +GV  K++ I+++ K
Sbjct: 461 VDAKAAVIELADGIDGILRAADISQDRVEDARTVLNVGEEVEAKFMGVDKKTRAISLSIK 520

Query: 567 KTLVKSKLAILSSYA 581
                 +  ++S Y+
Sbjct: 521 AKDRAEEAEMVSDYS 535



 Score = 43.5 bits (101), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 85/414 (20%), Positives = 163/414 (39%), Gaps = 69/414 (16%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN----SVVHGYVCNIIETGCFVRF 781
            +L+ LD   +N+++S +  +    Q+  ++   +  N    +VV G V N+ + G F+  
Sbjct: 155  KLIKLDRRRNNVVVSRRAVV---EQEYSAEREELLKNLQEGAVVKGIVKNLTDYGAFLD- 210

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S    +GQ V   +L  + E  R++L LKQ         
Sbjct: 211  LGGIDGLLHITDMAWKRVKHPSDVVEIGQEVEVKVLKFDRERMRVSLGLKQ--------- 261

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE----- 896
                  L E+    +               +  G+ I GKV    D+G  V  E+     
Sbjct: 262  ------LGEDPWENITRR------------YPTGTRIFGKVTNITDYGCFVEIEDGVEGL 303

Query: 897  -HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE--ANSNR 953
             H     +   +   G  V  G  ++  ILD+ +  R + L +K    + + +  AN NR
Sbjct: 304  VHVSEMDWTNKNVNPGKVVAIGDEVEVMILDLDEERRRISLGMKQCQSNPWDDFAANHNR 363

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 1013
              +K + + ++  D GV   ++  +    +  + LS   + H  G  ++          +
Sbjct: 364  -GEKVRGQIKSITDFGVFVGLDGGI----DGLIHLSDLSW-HEAGEEAI----------R 407

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
             F  G  V A V+++       R+ L LK +     S+      K     GS+V+  + E
Sbjct: 408  NFKKGDEVEAVVLSVDPERE--RISLGLKQLDRDPFSNFVAEHTK-----GSIVKGTVKE 460

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
            +      ++   G  G +   +++ D+   VE+  +   +G+ V A+ +    K
Sbjct: 461  VDAKAAVIELADGIDGILRAADISQDR---VEDARTVLNVGEEVEAKFMGVDKK 511



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 9/110 (8%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEP 1438
            V+G +K++T  G F+ L   +D  + LS+LS  + E+ E   + F  G  V   VLSV+P
Sbjct: 367  VRGQIKSITDFGVFVGLDGGIDGLIHLSDLS--WHEAGEEAIRNFKKGDEVEAVVLSVDP 424

Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              +R+ + LK  D    S    N ++    G IV G +K V++    I +
Sbjct: 425  ERERISLGLKQLDRDPFS----NFVAEHTKGSIVKGTVKEVDAKAAVIEL 470



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L    +V+G VKN+T  G F+ L   +D  + +++++   V+ P     IG+ V 
Sbjct: 184  ELLKNLQEGAVVKGIVKNLTDYGAFLDLG-GIDGLLHITDMAWKRVKHPSDVVEIGQEVE 242

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1489
             +VL  +    RV + LK        +    N++  +  G  + G++  +  YG F+ IE
Sbjct: 243  VKVLKFDRERMRVSLGLK-----QLGEDPWENITRRYPTGTRIFGKVTNITDYGCFVEIE 297

Query: 1490 N 1490
            +
Sbjct: 298  D 298


>gi|319939079|ref|ZP_08013443.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
 gi|335030671|ref|ZP_08524155.1| 30S ribosomal protein S1 [Streptococcus anginosus SK52 = DSM 20563]
 gi|319812129|gb|EFW08395.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
 gi|333771277|gb|EGL48230.1| 30S ribosomal protein S1 [Streptococcus anginosus SK52 = DSM 20563]
          Length = 399

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG----GVKALCPLPHMSEFEI---VK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G    GV  L  L +  E +I   VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDANQANVAIAGTGVEGVLTLRELTNDREADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---- 653
           K G  V F  G++GF P S L  D     ++   VGQ  + +I    P   R  LS    
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFEAKIKEVDPKENRFILSRREV 175

Query: 654 FMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
              K      +   KL  G +V+G V  +T     + +   G   G +    L+   E  
Sbjct: 176 VEEKAAAARAEVFSKLAVGDIVTGKVARITSFGAFIDL---GGVDGLVHLTELSH--ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E + ++L L+ E   + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVSVGDEIEVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGT 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN++  R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++     + R++LS      R +++D
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERPAQED 358



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GDEIEVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
            ++RV +++K  + R A +
Sbjct: 340  AERVSLSIKALEERPAQE 357



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 43/228 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  I   G F+  LG + G    ++    +         VG  +   +
Sbjct: 189 SKLAVGDIVTGKVARITSFGAFID-LGGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           LD+N E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LDLNEEEGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV-A 928
           VIEG V    DFG  V  E    + G +   Q++   VE+       G  +   +LDV A
Sbjct: 281 VIEGTVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNA 338

Query: 929 KAERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
            AER V LS+K    +R  + +S    RQ++ +++KR+  +D  + +T
Sbjct: 339 DAER-VSLSIKA-LEERPAQEDSQKEKRQSRPRRQKRQEKRDFELPET 384



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V L+ LS     SP+    +G  +  +VL 
Sbjct: 191  LAVGDIVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLD 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 250  LNEEEGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|420211146|ref|ZP_14716520.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM001]
 gi|394281599|gb|EJE25825.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM001]
          Length = 392

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 153/371 (41%), Gaps = 30/371 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 ---LGSLVSGVVDVVTPNAVVV----YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
              L SL  G  DV+  N   +      I  G   G +    L+   EH    + V+  G
Sbjct: 185 ASILDSLNEG--DVIDGNVARLTNFGAFIDIGGVDGLVHVSELSH--EHVQTPEEVVSVG 240

Query: 722 -YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                ++  ++ +S  + LS K +L    + +  +    H + V+ G V  + + G FV 
Sbjct: 241 EAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGE---FHEDDVIEGTVVRLADFGAFVE 297

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---- 836
               + G    S+         ++    GQ V   IL ++ +  RI+LS+K +       
Sbjct: 298 IAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENVI 357

Query: 837 STDASFMQEHF 847
            +DAS  Q + 
Sbjct: 358 ESDASTTQSYL 368



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 110/251 (43%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E L     KAS  + L         G V+ G V  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGNVARLTNFGAFIDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG   ++  + +   S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGEFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLADFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSF 654
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347


>gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
 gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
          Length = 555

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 147/359 (40%), Gaps = 40/359 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG V KG V  +  FGA +    G+  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 182 IQPGQVRKGVVKNITDFGAFIDL-DGMDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIE 240

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R+++  K+T       I   +   T     HG +  +  +G F+    GV+G  
Sbjct: 241 VNRDKERVSLGLKQTTKNPWDEIEQKFPVGTK---IHGKVVNLVPYGAFIEIEPGVEGLV 297

Query: 614 PRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 668
             +E+       +PS M  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 298 HITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPW---DMVRHNY 354

Query: 669 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 722
            +G+ V G V  +T     + +      +G     H++D      + H +    V+K G 
Sbjct: 355 PIGARVHGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EVLKKGD 406

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 777
           E D + VLD + S   +S         +QL  D      S      VV G V  I   G 
Sbjct: 407 EVDAI-VLDVDPSQQRISL------GMKQLAVDPWSDIDSFFKIGDVVKGTVTKITSFGA 459

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           FV     + G    S+  + +   +      GQ V + ++ ++ +  R+ LS+K +  S
Sbjct: 460 FVDLKDGIDGLVHISQISEERIEKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYS 518



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 121/567 (21%), Positives = 224/567 (39%), Gaps = 91/567 (16%)

Query: 576  ILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-CEPSSMY 630
            +L+    A D+L    I  G IT+I ++   V      +G  P +E  +D G  +  S  
Sbjct: 4    LLAQEPAAFDKLKEGQIVSGVITEIRQNEVVVDIGGKSEGVIPANEF-IDIGELQIGSTI 62

Query: 631  HVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVV 687
             V  V K    + +P      LSF   +  +  E+ L K   GS+  G V       +++
Sbjct: 63   EV-YVEKLEDKNGLPV-----LSFDKAEQKKNWENILTKFPEGSVAVGRVKAKVKGGLII 116

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
             +    +    +P  H+   ++    +   +   Y+F ++L ++ E  N++LS +  LI 
Sbjct: 117  SIGVDAF----MPASHI--DIQPPKNLDQYVGQTYDF-KVLKINQERKNIVLS-RRELIE 168

Query: 748  S--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
               +++  +    I P  V  G V NI + G F+   G + G    +    G+ A  S+ 
Sbjct: 169  QQRSEKRRNLLESIQPGQVRKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRIAHPSEM 227

Query: 806  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
               G+ ++  I++VN +  R++L LKQ+  +  D         +E+K             
Sbjct: 228  LKQGEEIQVMIIEVNRDKERVSLGLKQTTKNPWDE--------IEQK------------- 266

Query: 866  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA------GATVESGSV 919
                  F +G+ I GKV     +G  +  E   +    IT              +  G  
Sbjct: 267  ------FPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEMLRVGQE 320

Query: 920  IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
            + A +L + K ++ + L L+ +  + +     N     +           VH  V  +  
Sbjct: 321  LDAVVLGIQKEDQKISLGLRQLEPNPWDMVRHNYPIGAR-----------VHGKVRNMT- 368

Query: 980  IVKENYLVLSLPEYNHSI-GYASVSDYNTQK---FPQKQFLNGQSVIATVMALPSSSTAG 1035
                     +  E    I G   VSD +  +    P +    G  V A V+ +  S    
Sbjct: 369  ------TYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQ-- 420

Query: 1036 RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095
            R+ L +K ++    S        S + +G +V+  +T+I      +    G  G +HI++
Sbjct: 421  RISLGMKQLAVDPWSDI-----DSFFKIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQ 475

Query: 1096 VNDDKSNVVENLFSNFKIGQTVTARII 1122
            +++++   +E +    K GQ VTAR+I
Sbjct: 476  ISEER---IEKVKDVLKPGQEVTARVI 499



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 42/241 (17%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            +N+ T   EG +  GR+   + G  GL++ IG   +               P S  D   
Sbjct: 90   ENILTKFPEGSVAVGRVKAKVKG--GLIISIGVDAFM--------------PASHID--- 130

Query: 1311 FDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1368
              P    D+  GQ    KVL+I++  +   ++ LS R  ++   S    +L         
Sbjct: 131  IQPPKNLDQYVGQTYDFKVLKINQERK---NIVLSRRELIEQQRSEKRRNL--------- 178

Query: 1369 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1428
                +E + P  + +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ 
Sbjct: 179  ----LESIQPGQVRKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRIAHPSEMLKQGEE 233

Query: 1429 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +   ++ V    +RV + LK +      + E        VG  + G++  +  YG FI I
Sbjct: 234  IQVMIIEVNRDKERVSLGLKQTTKNPWDEIE----QKFPVGTKIHGKVVNLVPYGAFIEI 289

Query: 1489 E 1489
            E
Sbjct: 290  E 290



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 88/471 (18%), Positives = 182/471 (38%), Gaps = 61/471 (12%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G +V G +  +     +V   G  + + P     +   ++ G   +V  E +    G
Sbjct: 15  LKEGQIVSGVITEIRQNEVVVDIGGKSEGVIPANEFIDIGELQIGSTIEVYVEKLEDKNG 74

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +         +K   K+   IL+ + E +   +  G +    K G  +    GV  F P 
Sbjct: 75  LPVLSFDKAEQK---KNWENILTKFPEGS---VAVGRVKAKVKGGLIISI--GVDAFMPA 126

Query: 616 SELGLDPGCEPSSM-YHVGQVVKCRIMS------SIPASRRINLSFMMKPTRVSEDDLVK 668
           S + + P   P ++  +VGQ    +++       +I  SRR  +       R +  + ++
Sbjct: 127 SHIDIQP---PKNLDQYVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIQ 183

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
            G +  GVV  +T      ++   G       T+     + H + M   +K G E   ++
Sbjct: 184 PGQVRKGVVKNITDFGA--FIDLDGMDGLLHITDMSWGRIAHPSEM---LKQGEEIQVMI 238

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           + ++ +   + L  K +  N   ++          + +HG V N++  G F+     + G
Sbjct: 239 IEVNRDKERVSLGLKQTTKNPWDEI---EQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEG 295

Query: 788 FAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
               ++    +R +  S+   VGQ + + +L +  E  +I+L L+Q   +  D       
Sbjct: 296 LVHITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPWDMV----- 350

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                        +HN         + IG+ + GKV     +G  +  EE  D    ++ 
Sbjct: 351 -------------RHN---------YPIGARVHGKVRNMTTYGAFIELEEGIDGMVHVSD 388

Query: 907 HQLA------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
                        ++ G  + A +LDV  +++ + L +K + +D + + +S
Sbjct: 389 MSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQRISLGMKQLAVDPWSDIDS 439



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G V+N+T+ G FI L   +D  V +S++S    V  P +    G  V   VL V+P  
Sbjct: 360  VHGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQ 419

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            +R+ + +K         S+I++     +GD+V G + ++ S+G F+ +++
Sbjct: 420  QRISLGMKQ--LAVDPWSDIDSF--FKIGDVVKGTVTKITSFGAFVDLKD 465



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 156/385 (40%), Gaps = 39/385 (10%)

Query: 188 HVGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
           +VGQ     VL+++ ++K I   R+  +  + S   + L LE++Q G V    VK+I D 
Sbjct: 140 YVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNL-LESIQPGQVRKGVVKNITDF 198

Query: 247 GYILHF----GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 302
           G  +      GL   T  +    +A  S + +K G  +Q ++  ++R ++ V L      
Sbjct: 199 GAFIDLDGMDGLLHITD-MSWGRIAHPSEM-LKQGEEIQVMIIEVNRDKERVSLGL---- 252

Query: 303 VSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
             K  TK+     I+   P G  +  +V +++  G  +       G V I  +  T    
Sbjct: 253 --KQTTKN-PWDEIEQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRIN 309

Query: 362 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPP----SHVKVGDIYD 412
                    ++++A +L +    + + L L     NP+ +     P     H KV ++  
Sbjct: 310 KPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPWDMVRHNYPIGARVHGKVRNMTT 369

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFR 471
               + ++ G+                V +SD++   +V    +  K+G  V   +L   
Sbjct: 370 YGAFIELEEGID-------------GMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVD 416

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 531
             +   +  +K  A +      S  K G VVKG V  + SFGA V    G+  L  +  +
Sbjct: 417 PSQQRISLGMKQLAVDPWSDIDSFFKIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQI 476

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGV 556
           SE  I K     K G E+  RV+ +
Sbjct: 477 SEERIEKVKDVLKPGQEVTARVIKI 501


>gi|384438724|ref|YP_005653448.1| RNA binding S1 domain-containing protein [Thermus sp. CCB_US3_UF1]
 gi|359289857|gb|AEV15374.1| RNA binding S1 domain protein [Thermus sp. CCB_US3_UF1]
          Length = 561

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 108/478 (22%), Positives = 191/478 (39%), Gaps = 73/478 (15%)

Query: 650  INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
             ++   ++ T    +  V+ G +++G V +V    V V + AK  ++G IP   L + + 
Sbjct: 43   FSMEEALQETEARLEKRVRPGQVLTGKVVLVGSEGVAVDIGAK--TEGIIPFNQLTEKVL 100

Query: 710  HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
                +K ++KPG E   Q+L +D E+  +LLS K   + + +      +       V   
Sbjct: 101  PEEELKGLLKPGDEVRVQVLRVDPETGQILLSRKK--VEATEHWDHIQALYERGEPVTVT 158

Query: 769  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT----YYVGQSVRSNILDVNSETG 824
            V   ++ G      G +  F P S+       DL +T     YVGQ + + I++ + + G
Sbjct: 159  VKEKVKGGVVAELDG-VQAFIPASQL------DLRRTPNLDEYVGQQILAKIIEFHRKKG 211

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            R+ LS +        A   +E    +E  A  QS K              G V+EG V +
Sbjct: 212  RVLLSRR--------AVLEEEQKRAKE--AFFQSLKP-------------GQVVEGAVVD 248

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLS 937
              DFG  V+      V G +   ++           +  G  ++A ++ V  A+  V+LS
Sbjct: 249  VTDFGAFVNL---GPVDGLVHRSEITWGRFGHPKEVIHKGQRVRAQVVSVDPAKERVNLS 305

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            +K +  D +               R   K +G+     A VE+          P     I
Sbjct: 306  IKALIPDPWTTVAEKYPVG----TRVKGKVVGL-TPFGAFVEVE---------PGLEGLI 351

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
              + +S     K P +    G  V A V+ L       RL L LK     +T        
Sbjct: 352  HISELSWTKRPKHPSEVVKEGDEVEAVVLRLDPGER--RLSLGLK-----QTQPDPWQLL 404

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
               Y  G++V+  +T +    + ++   G  G +H++E++  +   V+N  ++FK G+
Sbjct: 405  VEKYPPGTVVKGRVTGVTDFGVFVELEPGMEGLVHVSELDHQR---VDNPAAHFKKGE 459



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 143/332 (43%), Gaps = 33/332 (9%)

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGVKSK--RITVTHKKTL 569
           G +V    GV+A  P    S+ ++ + P     VG +++ +++    K  R+ ++ +  L
Sbjct: 165 GGVVAELDGVQAFIP---ASQLDLRRTPNLDEYVGQQILAKIIEFHRKKGRVLLSRRAVL 221

Query: 570 V----KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625
                ++K A   S        +  G +  +   G FV     V G   RSE+       
Sbjct: 222 EEEQKRAKEAFFQSLKPGQ---VVEGAVVDVTDFGAFVNL-GPVDGLVHRSEITWGRFGH 277

Query: 626 PSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKP-TRVSEDDLVKLGSLVSGVVDVVT 681
           P  + H GQ V+ +++S  PA  R+NLS    +  P T V+E     +G+ V G V  +T
Sbjct: 278 PKEVIHKGQRVRAQVVSVDPAKERVNLSIKALIPDPWTTVAEK--YPVGTRVKGKVVGLT 335

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQ-LLVLDNESSNLL 738
           P    V V  +   +G I    L+     +H +    V+K G E +  +L LD     L 
Sbjct: 336 PFGAFVEV--EPGLEGLIHISELSWTKRPKHPS---EVVKEGDEVEAVVLRLDPGERRLS 390

Query: 739 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
           L  K +  +  Q L        P +VV G V  + + G FV     + G    S+ +D Q
Sbjct: 391 LGLKQTQPDPWQLL---VEKYPPGTVVKGRVTGVTDFGVFVELEPGMEGLVHVSE-LDHQ 446

Query: 799 RADLSKTYY-VGQSVRSNILDVNSETGRITLS 829
           R D    ++  G+ +   +L+++    RI+LS
Sbjct: 447 RVDNPAAHFKKGEEMEVVVLNIDPVEQRISLS 478



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 44/239 (18%)

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
             H G+ V   V+S++  K+ + L ++     I D           T + E   VG R+  
Sbjct: 282  IHKGQRVRAQVVSVDPAKERVNLSIKAL---IPDP---------WTTVAEKYPVGTRVKG 329

Query: 1270 ILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1327
             + G+   G  V++ P L G +H +EL           + +    P     EG  V+  V
Sbjct: 330  KVVGLTPFGAFVEVEPGLEGLIHISEL----------SWTKRPKHPSEVVKEGDEVEAVV 379

Query: 1328 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1387
            L +    R      LSL     G+  T           P + L  +E   P  +V+G V 
Sbjct: 380  LRLDPGER-----RLSL-----GLKQTQPD--------PWQLL--VEKYPPGTVVKGRVT 419

Query: 1388 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446
             VT  G F+ L   ++  V +S L    V++P   F  G+ +   VL+++P+ +R+ ++
Sbjct: 420  GVTDFGVFVELEPGMEGLVHVSELDHQRVDNPAAHFKKGEEMEVVVLNIDPVEQRISLS 478



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
             + L P  +V+G V +VT  G F+ L   +D  V  S ++ G    P++    G+ V  +
Sbjct: 233  FQSLKPGQVVEGAVVDVTDFGAFVNLG-PVDGLVHRSEITWGRFGHPKEVIHKGQRVRAQ 291

Query: 1433 VLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            V+SV+P  +RV +++K    D  T             VG  V G++  +  +G F+ +E
Sbjct: 292  VVSVDPAKERVNLSIKALIPDPWTTVA------EKYPVGTRVKGKVVGLTPFGAFVEVE 344


>gi|334136644|ref|ZP_08510104.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
 gi|333605843|gb|EGL17197.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
          Length = 418

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 25/348 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           VK G +VKGK+I V+   AIV          PL  +S  +I    +  + G E+  +++ 
Sbjct: 27  VKKGDIVKGKIIKVEQDQAIVDIGYKYDGTIPLRELSSVQIENADQAVQEGQEIELKIVT 86

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +   +  +   K  V S+ A  +   +  +++I    + ++ K G  V    GV+GF P 
Sbjct: 87  IDDNKEKLVLSKRSVDSEKAWETLQQKLDEKVIIEAVVAEVVKGGLVVDV--GVRGFVPA 144

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL---VKL 669
           S +      E  S Y  G+ ++ R+        ++ LS    + +     + D+   +++
Sbjct: 145 S-MVERSFVEDFSDYK-GRTLRLRVKEIDREKNKVILSQKDVLDEEYEAQKKDIISKIEV 202

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QL 727
           G +  G V  +T     V +   G   G +    +A  H+EH +    ++K G +   Q+
Sbjct: 203 GKVYEGTVQRLTQFGAFVDI---GGIDGLVHISEMAWHHVEHPS---EIVKEGDKVSVQV 256

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLGRL 785
           L +D E   + LS K     + Q+ P + +        ++ G V  +   G FV     +
Sbjct: 257 LKVDPEKDKVSLSLK-----ATQEGPWEKAEKTFTTGEIITGTVKRLAGFGAFVEIAPGV 311

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+      A   +    GQ V+  +LDVN+   R++LS+K++
Sbjct: 312 EGLVHISQIAHRHIATPQEVLKEGQEVKVKVLDVNAAEKRVSLSIKET 359



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 145/330 (43%), Gaps = 51/330 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V  G  V G + KV+ + A++ I       + + +      +++   +    G+ +   +
Sbjct: 27   VKKGDIVKGKIIKVEQDQAIVDIGYKYDGTIPLRE--LSSVQIENADQAVQEGQEIELKI 84

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLV 1278
            ++I+  K+  +LVL       S ++VD     + +Q  + E  I+   +++++ G  GLV
Sbjct: 85   VTIDDNKE--KLVL-------SKRSVDSEKAWETLQQKLDEKVIIEAVVAEVVKG--GLV 133

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V +G  + G V            P S  +    +  S Y +G+ ++ +V EI R      
Sbjct: 134  VDVG--VRGFV------------PASMVERSFVEDFSDY-KGRTLRLRVKEIDREKNKVI 178

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
               LS +  LD        D+ + ++  GK            + +G V+ +T  G F+ +
Sbjct: 179  ---LSQKDVLDEEYEAQKKDIISKIEV-GK------------VYEGTVQRLTQFGAFVDI 222

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
               +D  V +S ++  +VE P +    G  V+ +VL V+P   +V ++LK +      ++
Sbjct: 223  G-GIDGLVHISEMAWHHVEHPSEIVKEGDKVSVQVLKVDPEKDKVSLSLKATQEGPWEKA 281

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            E         G+I+ G +KR+  +G F+ I
Sbjct: 282  E----KTFTTGEIITGTVKRLAGFGAFVEI 307



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 24/167 (14%)

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G  V+  VL ++ EK  + L L+  Q+G  +K         +TF   G+I+ G + + L+
Sbjct: 249  GDKVSVQVLKVDPEKDKVSLSLKATQEGPWEKA-------EKTFTT-GEIITGTVKR-LA 299

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            G G  V +I P + G VH +++ +  ++            P     EGQ VK KVL+++ 
Sbjct: 300  GFGAFV-EIAPGVEGLVHISQIAHRHIA-----------TPQEVLKEGQEVKVKVLDVNA 347

Query: 1333 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
              +    V LS++ + +  + T SS  S     P +     ++L+ N
Sbjct: 348  AEK---RVSLSIKETEEAPAQTASSAPSNYSSRPERSSNHQKELAGN 391


>gi|220926381|ref|YP_002501683.1| 30S ribosomal protein S1 [Methylobacterium nodulans ORS 2060]
 gi|219950988|gb|ACL61380.1| ribosomal protein S1 [Methylobacterium nodulans ORS 2060]
          Length = 569

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 113/505 (22%), Positives = 199/505 (39%), Gaps = 69/505 (13%)

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
           L+G A+     +A     F   ++  G VVKG+V+A++   A++      +   PL    
Sbjct: 5   LQGAASSREDFAALLEESFRQHEITEGSVVKGRVVAIEKDVAVIDIGAKTEGRVPLK--- 61

Query: 533 EFEIVKPGKK--FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLI 588
             E   PG+     VG E+   V  +++      ++  K   +     L    E  +R+ 
Sbjct: 62  --EFTGPGRDQPINVGDEVEVYVDRIENALGEAVISRDKARREESWVKLEKAFENNERVT 119

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSI 644
             G I    K G  V   +G   F PRS++ + P  + + +    Q  +     R   +I
Sbjct: 120 --GTIFNQVKGGYTVDL-DGAVAFLPRSQVDIRPVRDVTPLMGTPQPFQILKMDRRRGNI 176

Query: 645 PASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
             SRR  L       R      ++ G ++ GVV  +T     V +   G   G +    +
Sbjct: 177 VVSRRTVLEESRAEQRSELVANLEEGQVIDGVVKNITEYGAFVDL---GGIDGLLHVTDM 233

Query: 705 A----DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           A    +H      +   +K      +++ +++E+  + L  K  L +  + +   A+   
Sbjct: 234 AWRRVNHPSEVVNIGQTVKV-----KIIKINHETHRISLGIKQLLADPWEGI---AARYP 285

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDV 819
            N+ + G V NI + G FV     + G    S+ +   +     K     Q V   IL+V
Sbjct: 286 VNAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEV 345

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           +    RI+L LKQ+  +  +A F ++H                           +GS +E
Sbjct: 346 DPVKRRISLGLKQTLQNPWEA-FAEKH--------------------------PVGSEVE 378

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAE 931
           G+V    +FG+ +  E   DV G +    L     G  V    + G V++A +LDV   +
Sbjct: 379 GEVKNKTEFGLFIGLE--GDVDGMVHLSDLDWNRPGEQVIDEFKKGDVVRAQVLDVDVEK 436

Query: 932 RLVDLSLKTVFIDRFREANSNRQAQ 956
             + L +K +  D F +A   R+ Q
Sbjct: 437 ERISLGIKQLAGDPFADAGEIRKGQ 461


>gi|257064689|ref|YP_003144361.1| 30S ribosomal protein S1P [Slackia heliotrinireducens DSM 20476]
 gi|256792342|gb|ACV23012.1| SSU ribosomal protein S1P [Slackia heliotrinireducens DSM 20476]
          Length = 407

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG--AELVFRV 553
           +K GM + G V ++  FGA V   GG+  L  +  +S   +  P +  KVG   E+    
Sbjct: 204 LKAGMRLNGVVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGQEVEVEVLK 262

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           + +  +RI++  K+T     L ++ +Y   +   I  G +TKI   G FV   N V+G  
Sbjct: 263 VELDRERISLGLKQTTEDPWLKLVEAYPAGS---IIDGKVTKIVPFGAFVELGNNVEGLV 319

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SE+       P+ +  VGQ VK ++M   P  RRI+LS 
Sbjct: 320 HISEMAPRRIDTPAQVVKVGQDVKVKVMEVNPERRRISLSM 360



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 156/393 (39%), Gaps = 52/393 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     +      +G  P  EL +    +PS +   G  ++  ++      
Sbjct: 36  LVKGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDADPSEIVAEGDEIEALVLQKEDKD 95

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +   +S ++  K G  V G V  V    +++ +  +G+   ++     
Sbjct: 96  GRLILSKKRAEYERAWISVEEKFKAGEPVVGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 705 ADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
              L+             E +  ++ +D   +N++LS +  L ++ +   ++    +   
Sbjct: 156 VKDLDMYL--------NTELEACVIEMDRNRNNVVLSRRALLEDARKNERAEILGQLKAG 207

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             ++G V +I++ G FV  LG + G    S+         S+   VGQ V   +L V  +
Sbjct: 208 MRLNGVVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGQEVEVEVLKVELD 266

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             RI+L LKQ+                                LK VE +  GS+I+GKV
Sbjct: 267 RERISLGLKQTTEDPW---------------------------LKLVEAYPAGSIIDGKV 299

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVD 935
            +   FG  V     ++V G +   ++A          V+ G  ++  +++V    R + 
Sbjct: 300 TKIVPFGAFVEL--GNNVEGLVHISEMAPRRIDTPAQVVKVGQDVKVKVMEVNPERRRIS 357

Query: 936 LSLKTVFIDR--FREANSNRQAQKKKRKREASK 966
           LS+K    +     E +   QA+ ++ +++A K
Sbjct: 358 LSMKAAAAELGIEIEVDETVQAEPRQPRKKADK 390



 Score = 43.9 bits (102), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 147/355 (41%), Gaps = 25/355 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T ++   G +VKG V+ ++    ++      + + P   +S  +   P +    G E+  
Sbjct: 27  TLTEFDEGDLVKGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDADPSEIVAEGDEIEA 86

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL  + K  R+ ++ K+   +     +    +A + ++  G + ++ K G  +    G+
Sbjct: 87  LVLQKEDKDGRLILSKKRAEYERAWISVEEKFKAGEPVV--GEVIEVVKGGLILDI--GL 142

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKC-----RIMSSIPASRRINLSFMMKPTRVSED 664
           +GF P S + L    +   MY   ++  C     R  +++  SRR  L    K  R    
Sbjct: 143 RGFLPASLVDLRR-VKDLDMYLNTELEACVIEMDRNRNNVVLSRRALLEDARKNERAEIL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             +K G  ++GVV  +      V +   G   G +    L+ +H+ H + +  V +    
Sbjct: 202 GQLKAGMRLNGVVSSIVDFGAFVDL---GGIDGLVHISELSWNHVNHPSEVVKVGQEVEV 258

Query: 724 FDQLLVLDNESSNLLL--SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
               + LD E  +L L  + +   +   +  P+        S++ G V  I+  G FV  
Sbjct: 259 EVLKVELDRERISLGLKQTTEDPWLKLVEAYPA-------GSIIDGKVTKIVPFGAFVEL 311

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              + G    S+    +    ++   VGQ V+  +++VN E  RI+LS+K +   
Sbjct: 312 GNNVEGLVHISEMAPRRIDTPAQVVKVGQDVKVKVMEVNPERRRISLSMKAAAAE 366


>gi|415682273|ref|ZP_11447589.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315195373|gb|EFU25760.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 391

 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELEPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N  + G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDDIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 110/303 (36%), Gaps = 67/303 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + ++  E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELEPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
           +       V G +        H Q     V  G  ++  I  + +    + LS+K     
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267

Query: 945 RFR 947
            F 
Sbjct: 268 PFE 270



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 168/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELEPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +D   G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDDIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373


>gi|399154590|ref|ZP_10754657.1| 30S ribosomal protein S1 [gamma proteobacterium SCGC AAA007-O20]
          Length = 557

 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 156/387 (40%), Gaps = 48/387 (12%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            G  V+G V  +  +GA V   GG+  L  +  +S   +  P +K  +G ++  ++L   
Sbjct: 191 AGKEVEGIVKNLADYGAFVDL-GGIDGLLHITDISWQRVNHPSEKLSIGDKIKVKILSYD 249

Query: 558 SKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            +++ V+   K L  S    +S       R++  G ++ +  +G FVR   GV+G    S
Sbjct: 250 KEKMRVSLGLKQLTPSPWDNISERLPIGKRVV--GVVSNLTDYGAFVRVEEGVEGLVHVS 307

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSL 672
           E+   +    PS    +GQ V+  ++    +  RI+LS       P    E    K G  
Sbjct: 308 EMDWTNANARPSKFVKLGQEVEIVVLDVQESKHRISLSMKQAKENPWEAFEGSHNK-GDN 366

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLV 729
           ++ +V  +T   + V     G   G     HLAD     + A  + S    G E D +++
Sbjct: 367 INVIVKSITDFGLFV-----GLPGGIDGLIHLADISWEKQSADQIVSNYSKGQELDVVIL 421

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFLG 783
            +D E   + L  K        QL SD    ++  N   S+V G V  +   G  +    
Sbjct: 422 NIDAEKERISLGIK--------QLTSDNFTRYVSANTKGSIVKGSVTEVDAKGAVIELAE 473

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            +TG+   S+    +  D S     G  V   I  ++    +++LS+K            
Sbjct: 474 GITGYLKVSEISQDRIEDASTVLKQGVEVEVLITQIDRRARKVSLSMKAKES-------- 525

Query: 844 QEHFLLEEKIAM----LQSSKHNGSEL 866
                +EEK AM     QS + NGS L
Sbjct: 526 -----VEEKTAMENYKKQSPESNGSTL 547



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 154/369 (41%), Gaps = 60/369 (16%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +  +  +G FV    G+ G    +++       PS    +G  +K +I+S      R
Sbjct: 196 EGIVKNLADYGAFVDL-GGIDGLLHITDISWQRVNHPSEKLSIGDKIKVKILSYDKEKMR 254

Query: 650 INLSF-MMKPT---RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
           ++L    + P+    +SE   + +G  V GVV  +T     V V      +G     H++
Sbjct: 255 VSLGLKQLTPSPWDNISER--LPIGKRVVGVVSNLTDYGAFVRV-----EEGVEGLVHVS 307

Query: 706 D-HLEHATVMKS-VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA---SHIH 760
           +    +A    S  +K G E  +++VLD + S   +S     +  A++ P +A   SH +
Sbjct: 308 EMDWTNANARPSKFVKLGQEV-EIVVLDVQESKHRISLS---MKQAKENPWEAFEGSH-N 362

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRAD-LSKTYYVGQSVRSNILD 818
               ++  V +I + G FV   G + G    +  + + Q AD +   Y  GQ +   IL+
Sbjct: 363 KGDNINVIVKSITDFGLFVGLPGGIDGLIHLADISWEKQSADQIVSNYSKGQELDVVILN 422

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           +++E  RI+L +KQ            ++F                   ++V     GS++
Sbjct: 423 IDAEKERISLGIKQ---------LTSDNFT------------------RYVSANTKGSIV 455

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV-------IQAAILDVAKAE 931
           +G V E +  G V+   E   + G++   +++   +E  S        ++  I  + +  
Sbjct: 456 KGSVTEVDAKGAVIELAEG--ITGYLKVSEISQDRIEDASTVLKQGVEVEVLITQIDRRA 513

Query: 932 RLVDLSLKT 940
           R V LS+K 
Sbjct: 514 RKVSLSMKA 522



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 74/397 (18%)

Query: 721  GYEFDQLLV-LDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            G E + +++ +D   +N+++S K  +  +NSA +  +    +     V G V N+ + G 
Sbjct: 149  GQEIEAIVIKMDEVRNNIVISRKAVMQEVNSADR-EALIETLDAGKEVEGIVKNLADYGA 207

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            FV  LG + G    +  +  QR +  S+   +G  ++  IL  + E  R++L LKQ   S
Sbjct: 208  FVD-LGGIDGLLHITD-ISWQRVNHPSEKLSIGDKIKVKILSYDKEKMRVSLGLKQLTPS 265

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
              D         + E++                    IG  + G V    D+G  V  EE
Sbjct: 266  PWDN--------ISERLP-------------------IGKRVVGVVSNLTDYGAFVRVEE 298

Query: 897  HSDVYGFITHHQLAGAT------VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
              +    ++      A       V+ G  ++  +LDV +++  + LS+K           
Sbjct: 299  GVEGLVHVSEMDWTNANARPSKFVKLGQEVEIVVLDVQESKHRISLSMK----------- 347

Query: 951  SNRQAQKKKRKREASKDLGVHQ---TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
                 Q K+   EA +  G H     +N IV+ + +  L + LP      G   ++D + 
Sbjct: 348  -----QAKENPWEAFE--GSHNKGDNINVIVKSITDFGLFVGLP--GGIDGLIHLADISW 398

Query: 1008 QKFPQKQFLN----GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV 1063
            +K    Q ++    GQ +   ++ + +     R+ L +K ++    +    A  K     
Sbjct: 399  EKQSADQIVSNYSKGQELDVVILNIDAEKE--RISLGIKQLTSDNFTRYVSANTK----- 451

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
            GS+V+  +TE+      ++   G  G + ++E++ D+
Sbjct: 452  GSIVKGSVTEVDAKGAVIELAEGITGYLKVSEISQDR 488



 Score = 44.3 bits (103), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            IE L     V+G VKN+   G F+ L   +D  + ++++S   V  P ++  IG  +  +
Sbjct: 186  IETLDAGKEVEGIVKNLADYGAFVDLG-GIDGLLHITDISWQRVNHPSEKLSIGDKIKVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIE 1489
            +LS +    RV + LK       + S  +N+S  L +G  V+G +  +  YG F+ +E
Sbjct: 245  ILSYDKEKMRVSLGLKQ-----LTPSPWDNISERLPIGKRVVGVVSNLTDYGAFVRVE 297


>gi|67459163|ref|YP_246787.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
 gi|75536405|sp|Q4ULF1.1|RS1_RICFE RecName: Full=30S ribosomal protein S1
 gi|67004696|gb|AAY61622.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
          Length = 568

 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 153/363 (42%), Gaps = 24/363 (6%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKK---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359

Query: 656 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
               +  E+ L+K      +G+++   +  +T   +  +V       G I    ++   +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDK 414

Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
              ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   
Sbjct: 415 GTDLLKSY-KKGDEIECKVLAINIEKEQVSLGVKQLSPNPYQEI---SDEYKKGTIVKAL 470

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           +  + + G  V    ++ GF  R++  D +     + + + + + + ++ +   TGRI L
Sbjct: 471 ITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILL 530

Query: 829 SLK 831
           S+K
Sbjct: 531 SVK 533



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 131/602 (21%), Positives = 245/602 (40%), Gaps = 103/602 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMVIVDV--GLKNEGRIPKSEFLALPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLDNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +         + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKKMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                 +K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------IKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + +   
Sbjct: 400  MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGVKQLSPNPY--- 454

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                        +E S +      V A++  VK++ L + L   N   G+   ++ + +K
Sbjct: 455  ------------QEISDEYKKGTIVKALITEVKDDGLEVLL--NNKVAGFIKRTELSDEK 500

Query: 1010 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 1065
              QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G 
Sbjct: 501  DEQKPEMFKIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558

Query: 1066 LV 1067
            ++
Sbjct: 559  IL 560



 Score = 40.4 bits (93), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 121/287 (42%), Gaps = 41/287 (14%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKKMTGKVTNFADYGVFIELRDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
            ++ EK  + L ++  Q+   +  +  + +N       G I+   I  I     G+ V +G
Sbjct: 348  VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PVGTIIKAPIRNITDF--GIFVALG 397

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
             ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V L
Sbjct: 398  NNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QVSL 444

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             ++                   +P  + E  ++     IV+  +  V   G  ++L+ K+
Sbjct: 445  GVKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDDGLEVLLNNKV 487

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
               +  + LSD   E   + F I + +  +V+S+E  + R+ +++K 
Sbjct: 488  AGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILLSVKA 534


>gi|390948736|ref|YP_006412495.1| 30S ribosomal protein S1P [Thiocystis violascens DSM 198]
 gi|390425305|gb|AFL72370.1| SSU ribosomal protein S1P [Thiocystis violascens DSM 198]
          Length = 559

 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 144/355 (40%), Gaps = 40/355 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA +   GG+  L  +  M+   +  P +  ++G E+  +VL
Sbjct: 188 NLEEGMEVKGIVKNLTDYGAFLDM-GGIDGLLHITDMAWRRVKHPSEVVEIGDEVTVKVL 246

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               + +R+++  K+      + I   Y E+T      G +T I  +GCFV    GV+G 
Sbjct: 247 KFDRERQRVSLGLKQMGEDPWVNISRRYPESTR---VFGKVTNIADYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV- 667
              SE+   +    PS +  +G  V+  ++      RRI+L      M P     D+   
Sbjct: 304 VHVSEMDWTNKNIHPSKIVSLGDEVEVMVLDIDEERRRISLGIKQCAMNPW----DEFAV 359

Query: 668 --KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYE 723
             K G  VSG +  +T   + +     G   G     HL+D    E         K G E
Sbjct: 360 THKKGDHVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWDEAGEQALRRYKKGDE 414

Query: 724 FDQL-LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETG 776
            + + L +D E   + L  K        QL  D      A H     VV G V  +   G
Sbjct: 415 LETVVLSVDPERERISLGVK--------QLDKDPFSSFVALH-EKGCVVTGVVSEVDPKG 465

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +     + G+   S+    +  D      VG+ + +  L V+ +   ++LS+K
Sbjct: 466 ATITLADGVEGYLRASEINRDRIEDARAVLKVGEEIEAKFLGVDRKNRTLSLSMK 520



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 96/444 (21%), Positives = 181/444 (40%), Gaps = 73/444 (16%)

Query: 247 GYILHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGV-----VRSIDRTRKVVYLSS 298
           G+ +  G  +   FLP       S +DV+P      L+G      V  +DR R  V +S 
Sbjct: 119 GFTVDLG--AVRAFLP------GSLVDVRPVRDTAYLEGKEQEFKVIKLDRKRNNVVVSR 170

Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
                 + V ++      D L+  +     V+ I++N      LT +   +D+  +    
Sbjct: 171 ------RAVVEEEYSAERDTLLKNLEEGMEVKGIVKN------LTDYGAFLDMGGIDGLL 218

Query: 359 PTTNWKNDYNQH--------KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV 405
             T+      +H         +V  ++L  D   + V L L     +P++  +R  P   
Sbjct: 219 HITDMAWRRVKHPSEVVEIGDEVTVKVLKFDRERQRVSLGLKQMGEDPWVNISRRYPEST 278

Query: 406 ----KVGDIYDQSKVVRVDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
               KV +I D    V ++ G+ GL+    +D  +  +     V++ D  E  V  ++++
Sbjct: 279 RVFGKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKIVSLGDEVEVMVLDIDEE 338

Query: 457 YKEGSCVRVRI-LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
                  R RI LG +            + ++    TH   K G  V GK+ ++  FG  
Sbjct: 339 -------RRRISLGIKQC--------AMNPWDEFAVTH---KKGDHVSGKIKSITDFGIF 380

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFRVLGVKSKRITVTHK-KTLVKSK 573
           +   GG+  L  L  +S  E  +   +++K G EL   VL V  +R  ++   K L K  
Sbjct: 381 IGLDGGIDGLVHLSDISWDEAGEQALRRYKKGDELETVVLSVDPERERISLGVKQLDKDP 440

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
            +   +  E     +  G +++++  G  +   +GV+G+   SE+  D   +  ++  VG
Sbjct: 441 FSSFVALHEKG--CVVTGVVSEVDPKGATITLADGVEGYLRASEINRDRIEDARAVLKVG 498

Query: 634 QVVKCRIMSSIPASRRINLSFMMK 657
           + ++ + +     +R ++LS   K
Sbjct: 499 EEIEAKFLGVDRKNRTLSLSMKAK 522



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 136/361 (37%), Gaps = 53/361 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L+ ++EGM +   VK++ D+G  L  G     G L   ++A    ++    V+ G  +  
Sbjct: 186 LKNLEEGMEVKGIVKNLTDYGAFLDMG--GIDGLLHITDMAWRRVKHPSEVVEIGDEVTV 243

Query: 283 VVRSIDRTRKVVYLS-----SDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R+ V L       DP             ++I    P    V  +V +I + G
Sbjct: 244 KVLKFDRERQRVSLGLKQMGEDP------------WVNISRRYPESTRVFGKVTNIADYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-----TL 391
             +       G V +  +  T    +     +   +V   +L +D   R + L      +
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKIVSLGDEVEVMVLDIDEERRRISLGIKQCAM 351

Query: 392 NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+    + H +      K+  I D    + +D G+  L             V +SD++ 
Sbjct: 352 NPWDEFAVTHKKGDHVSGKIKSITDFGIFIGLDGGIDGL-------------VHLSDISW 398

Query: 448 EEV-RKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           +E   +  ++YK+G  +   +L     R    L    L    F   V  H   + G VV 
Sbjct: 399 DEAGEQALRRYKKGDELETVVLSVDPERERISLGVKQLDKDPFSSFVALH---EKGCVVT 455

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITV 563
           G V  VD  GA +    GV+       ++   I       KVG E+  + LGV  K  T+
Sbjct: 456 GVVSEVDPKGATITLADGVEGYLRASEINRDRIEDARAVLKVGEEIEAKFLGVDRKNRTL 515

Query: 564 T 564
           +
Sbjct: 516 S 516



 Score = 40.4 bits (93), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 21/175 (12%)

Query: 1315 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1374
            + Y EG+  + KV+++ R      +V +S R+ ++        + S + DT  K+LE+  
Sbjct: 144  TAYLEGKEQEFKVIKLDRKRN---NVVVSRRAVVE-------EEYSAERDTLLKNLEE-- 191

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
                 M V+G VKN+T  G F+ +   +D  + +++++   V+ P +   IG  V  +VL
Sbjct: 192  ----GMEVKGIVKNLTDYGAFLDMG-GIDGLLHITDMAWRRVKHPSEVVEIGDEVTVKVL 246

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              +   +RV + LK    +      +N          V G++  +  YG F+ IE
Sbjct: 247  KFDRERQRVSLGLK----QMGEDPWVNISRRYPESTRVFGKVTNIADYGCFVEIE 297


>gi|335357280|ref|ZP_08549150.1| 30S ribosomal protein S1 [Lactobacillus animalis KCTC 3501]
          Length = 397

 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +  G V+ GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V
Sbjct: 194 SQLAAGDVLDGKVARLTNFGAFIDL-GGVDGLVHVSEISYERVGKPSDVLKVGEDVKVKV 252

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V  +  RI+++ K+TL +    I    AE     +  G + ++   G FV  + GV+G
Sbjct: 253 LAVDPEKDRISLSIKQTLPQPWDNIEEKVAEGD---VLDGKVKRLTSFGAFVEVFPGVEG 309

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P+ +   GQ VK ++++   A RR+ LS 
Sbjct: 310 LVHISQISHKHIATPNEVLTSGQDVKVKVLNVNGADRRLALSI 352



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 140/350 (40%), Gaps = 56/350 (16%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL +    E      VG V+   ++S I  S +   S+++   R+      
Sbjct: 46  GVEGVVPARELSV-KADEIEDNIKVGDVLDLVVISKI-GSDKEGGSYLLSQRRLEARKVW 103

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D++ K    G  ++  V  +    +VV    +G+   ++ ++H  +              
Sbjct: 104 DEIEKKFEAGETITVPVTQIVKGGLVVDAGVRGFVPASMVSDHFVEDFNQYK-------- 155

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
           G E +  +V    S N L+ +   ++   ++       S +    V+ G V  +   G F
Sbjct: 156 GQELELKIVEIEPSENRLILSHKEIVQQEREAKKQEVMSQLAAGDVLDGKVARLTNFGAF 215

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    S+    +    S    VG+ V+  +L V+ E  RI+LS+KQ+     
Sbjct: 216 ID-LGGVDGLVHVSEISYERVGKPSDVLKVGEDVKVKVLAVDPEKDRISLSIKQTLPQPW 274

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +EEK+A                    G V++GKV     FG  V  E   
Sbjct: 275 DN--------IEEKVAE-------------------GDVLDGKVKRLTSFGAFV--EVFP 305

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V G      I+H  +A     + SG  ++  +L+V  A+R + LS+K +
Sbjct: 306 GVEGLVHISQISHKHIATPNEVLTSGQDVKVKVLNVNGADRRLALSIKAL 355



 Score = 48.5 bits (114), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 5/121 (4%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            K  E +  L+   ++ G V  +T+ G FI L   +D  V +S +S   V  P     +G+
Sbjct: 188  KKQEVMSQLAAGDVLDGKVARLTNFGAFIDLG-GVDGLVHVSEISYERVGKPSDVLKVGE 246

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  +VL+V+P   R+ +++K    +T  Q   N    +  GD++ G++KR+ S+G F+ 
Sbjct: 247  DVKVKVLAVDPEKDRISLSIK----QTLPQPWDNIEEKVAEGDVLDGKVKRLTSFGAFVE 302

Query: 1488 I 1488
            +
Sbjct: 303  V 303



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 360 TTNWKNDYNQHK--KVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYD 412
           + ++  D+NQ+K  ++  +I+ ++P+   + L+    +   R        S +  GD+ D
Sbjct: 144 SDHFVEDFNQYKGQELELKIVEIEPSENRLILSHKEIVQQEREAKKQEVMSQLAAGDVLD 203

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
             KV R+    G  +D+          V +S+++ E V K     K G  V+V++L    
Sbjct: 204 -GKVARL-TNFGAFIDLGGVD----GLVHVSEISYERVGKPSDVLKVGEDVKVKVLAVDP 257

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
            +   +  +K +  +        V  G V+ GKV  + SFGA V+   GV+ L  +  +S
Sbjct: 258 EKDRISLSIKQTLPQPWDNIEEKVAEGDVLDGKVKRLTSFGAFVEVFPGVEGLVHISQIS 317

Query: 533 EFEIVKPGKKFKVGAELVFRVLGV 556
              I  P +    G ++  +VL V
Sbjct: 318 HKHIATPNEVLTSGQDVKVKVLNV 341


>gi|198419554|ref|XP_002121057.1| PREDICTED: similar to LOC779090 protein, partial [Ciona
           intestinalis]
          Length = 246

 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANEDNL 182
           +  K +  GM   G V ++ E +LV+CLP  L G  +A   +      L+  +  +E   
Sbjct: 68  LQFKKVEVGMLFVGCVKDIYELELVMCLPDHLIGYVKATRISRTFSEKLEKTLYCDETTT 127

Query: 183 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
            L  IF VG+L+ C V  ++   K +      LS+    +   L+   +  GM + A VK
Sbjct: 128 PLNEIFKVGELLVCSVASVNPVTKSL-----QLSIDPQCVNANLNFTALHPGMFVAASVK 182

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
           S EDHG+ L  G    +GFLP     ++    +  G +++ V+  +    K++ LS++  
Sbjct: 183 SKEDHGFQLDIGKDGTSGFLPLK--YKDPETHLPTGGVIRCVIVEVKNGGKILILSNEKK 240

Query: 302 TVSK 305
            ++K
Sbjct: 241 KMNK 244


>gi|387879482|ref|YP_006309785.1| 30S ribosomal protein S1 [Streptococcus parasanguinis FW213]
 gi|386792935|gb|AFJ25970.1| 30S ribosomal protein S1 [Streptococcus parasanguinis FW213]
          Length = 399

 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 157/365 (43%), Gaps = 39/365 (10%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD++ A V   G GV+ +  L  ++        ++VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDAYQANVAISGTGVEGVLTLRELTNDRDADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  G++GF P S L  D     ++   VGQ    +I    P   R    F++ 
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFDAKIKEVDPKESR----FILS 171

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--- 714
              V E +     + V G ++V     VV   +A+  S G        D L H T +   
Sbjct: 172 RREVVEAESAAARAEVFGKLNV---GDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHE 228

Query: 715 -----KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
                KSV+  G E   ++L L+ E   + LS K +        P D     +    V+ 
Sbjct: 229 RNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVIE 283

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V  + + G FV  L  + G    S+    +  +      VGQ V   +L+VN+   R+
Sbjct: 284 GTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERV 343

Query: 827 TLSLK 831
           +LS+K
Sbjct: 344 SLSIK 348



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++++
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERPAQEE 358



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAA 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
             +RV +++K  + R A +
Sbjct: 340  DERVSLSIKALEERPAQE 357



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 42/251 (16%)

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G EFD ++  +D + S  +LS +  +   +    ++    ++   VV G V  I   G F
Sbjct: 151 GQEFDAKIKEVDPKESRFILSRREVVEAESAAARAEVFGKLNVGDVVTGKVARITSFGAF 210

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    ++    +         VG+ ++  +LD+N E GR++LSLK +     
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTPGPW 269

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +E+K+A                    G VIEG V    DFG  V  E   
Sbjct: 270 DG--------VEQKLAA-------------------GDVIEGTVKRLTDFGAFV--EVLP 300

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   Q++   VE+       G  +   +L+V  A+  V LS+K +     R A  
Sbjct: 301 GIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKAL---EERPAQE 357

Query: 952 NRQAQKKKRKR 962
             + Q+K++ R
Sbjct: 358 EGEKQEKRQSR 368



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V G V  +TS G FI L   +D  V L+ LS     SP+    +G+ +  +VL +    
Sbjct: 196  VVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEE 254

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 255  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|320107706|ref|YP_004183296.1| RNA-binding S1 domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319926227|gb|ADV83302.1| RNA binding S1 domain protein [Terriglobus saanensis SP1PR4]
          Length = 594

 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 156/359 (43%), Gaps = 27/359 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  + G V AV   G  V    GV+A  P       +  +  K   VG E++ R+  +  
Sbjct: 141 GTNIVGTVTAVVKGGLHVDV--GVRAFLPASRSGARDAAEMEKL--VGQEILCRITKLDV 196

Query: 559 KRITVTHKKTLVKSKLAILSS---YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
               V   + +V  + A+      +A   +  I  G +  +  +G F+    G+ G    
Sbjct: 197 VEEDVVIDRRVVTEEEALKGRDLRFAAMQEGAIVDGTVRSLADYGAFIDL-GGIDGLLHV 255

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK---LGS 671
           S++       PS +  VGQ V+ +++   P SRRI+L    ++P     DD+ +   +G 
Sbjct: 256 SDMAWSRIGNPSDVLEVGQTVQVKVLKIDPESRRISLGLKQLQPH--PWDDVAEKFAVGD 313

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS--VIKPGYEFDQL-L 728
            V G V         V  IA G  +G +   HL++      + K+  V+  G   D L L
Sbjct: 314 RVRGTVTRTAEFGAFVE-IAPGI-EGLV---HLSEMSWSKRIHKATEVLNVGDTVDALIL 368

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +  E   + L  K +L +   +    A  I   SVV G V  I++ G FV+    + G 
Sbjct: 369 AIGVEDRRISLGLKQALGDPWVEA---AERIKVGSVVEGPVVTIMKFGAFVQIAEGVQGL 425

Query: 789 APRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
              S+    +R +  S    VG+ V++ +L+++ E  ++ LS+KQ   +S D  F++EH
Sbjct: 426 VHISEITAERRLNHPSDVLRVGEVVKAQVLEIDKEKRQLRLSIKQLVPTSLD-EFLEEH 483



 Score = 43.5 bits (101), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +    IV G V+++   G FI L   +D  + +S+++   + +P     +G+ V  +VL 
Sbjct: 224  MQEGAIVDGTVRSLADYGAFIDLG-GIDGLLHVSDMAWSRIGNPSDVLEVGQTVQVKVLK 282

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++P S+R+ + LK    +       +      VGD V G + R   +G F+ I
Sbjct: 283  IDPESRRISLGLK----QLQPHPWDDVAEKFAVGDRVRGTVTRTAEFGAFVEI 331


>gi|256847157|ref|ZP_05552603.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
 gi|256715821|gb|EEU30796.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
          Length = 409

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I+K    E      S++  G VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 182 IVKKEHEEAAKKIFSELAAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 240

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
               +VG ++  +VL V  + +RI+++ K+TL      I      A D ++T G + ++ 
Sbjct: 241 SDVLEVGQDVKVKVLNVDPERERISLSIKQTLPGPWDDI--EEKAAVDTVLT-GTVKRLT 297

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 298 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVINVDPERQRLGLSI 354



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 19/241 (7%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P ++L   P  + + +  VG V+   ++S I  S + N S+++   R+      
Sbjct: 47  GVEGVVPANQLTTKPVEDINDVVKVGDVLDLVVISKI-GSDKENGSYLLSHRRLEAMKVW 105

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 106 DDIQKKFDAGETITAKVTQSVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 157

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
           G E +  ++    S N L+ +   ++    +  +    S +    VV G V  +   G F
Sbjct: 158 GQELEFKIIEIEPSENRLILSHKEIVKKEHEEAAKKIFSELAAGDVVEGKVARMTNFGAF 217

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    S+         S    VGQ V+  +L+V+ E  RI+LS+KQ+     
Sbjct: 218 ID-LGGVDGLVHVSEISYDHVDKPSDVLEVGQDVKVKVLNVDPERERISLSIKQTLPGPW 276

Query: 839 D 839
           D
Sbjct: 277 D 277



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +L+   +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL
Sbjct: 197  ELAAGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPSDVLEVGQDVKVKVL 255

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +V+P  +R+ +++K +        E        V  ++ G +KR+ S+G F+ +
Sbjct: 256  NVDPERERISLSIKQTLPGPWDDIE----EKAAVDTVLTGTVKRLTSFGAFVEV 305



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 34/200 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G+++++ +   G  + +G  + G VH +E+           YD     P    + 
Sbjct: 201  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEIS----------YDHVD-KPSDVLEV 246

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ VK KVL +         + LS++ +L G               P   +E  E  + +
Sbjct: 247  GQDVKVKVLNVDPERE---RISLSIKQTLPG---------------PWDDIE--EKAAVD 286

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +V++V+P 
Sbjct: 287  TVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVINVDPE 346

Query: 1440 SKRVEVTLKTSDSRTASQSE 1459
             +R+ +++K  + + A   +
Sbjct: 347  RQRLGLSIKALEEKPADSDD 366


>gi|386850278|ref|YP_006268291.1| transcriptional accessory protein [Actinoplanes sp. SE50/110]
 gi|359837782|gb|AEV86223.1| Transcriptional accessory protein [Actinoplanes sp. SE50/110]
          Length = 839

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 51/82 (62%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            +EKI DL P MI++G V NV + G F+ +    D  V +S LS+ +V+ P +    G +V
Sbjct: 662  VEKIADLKPGMILEGQVTNVAAFGAFVDIGVHQDGLVHVSALSEKFVQDPREVVKSGDVV 721

Query: 1430 AGRVLSVEPLSKRVEVTLKTSD 1451
              RVL V+P+ KR+ +T++ SD
Sbjct: 722  KVRVLEVDPVRKRISLTMRLSD 743


>gi|90406780|ref|ZP_01214972.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
 gi|90312017|gb|EAS40110.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
          Length = 555

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 149/350 (42%), Gaps = 30/350 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 187 NLQEGQDVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 245

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      +AI   Y E+T RL   G +T +  +GCFV    GV+G 
Sbjct: 246 KYDRERTRVSLGLKQLGEDPWVAIAKRYPEST-RLT--GKVTNLTDYGCFVEIEEGVEGL 302

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS +  +G + +  ++      RRI+L          E+       
Sbjct: 303 VHVSEMDWTNKNIHPSKVVSLGDMAEVMVLDIDEERRRISLGLKQCKANPWEEFSSTHDK 362

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  V+G +  +T     +++  +G   G +   HL+D        K+V   K G E +  
Sbjct: 363 GQKVTGKIKSITDFG--IFIGLEGNIDGLV---HLSDISWDVEGDKAVQEYKKGDEIEAV 417

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
           +L +D E   + L  K        Q+ +D   +++  N   S+V G +      G  V  
Sbjct: 418 VLQVDPERERISLGIK--------QIEADPFNNYLAENKKGSIVTGTILESDAKGAIVTL 469

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + G+   +     +  D S    VG+SV +  + V+ +   I+LS+K
Sbjct: 470 SDSVEGYIRVADISRDRVEDASTVLKVGESVEAKFVGVDRKNRVISLSIK 519



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 135/307 (43%), Gaps = 37/307 (12%)

Query: 368 NQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVR 418
           N   ++  ++L  D     V L L     +P++ +  R P S     KV ++ D    V 
Sbjct: 235 NVGDEITVKVLKYDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGKVTNLTDYGCFVE 294

Query: 419 VDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRH 472
           ++ G+ GL+    +D  +  +     V++ D+AE  V  ++++       R RI LG + 
Sbjct: 295 IEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDMAEVMVLDIDEE-------RRRISLGLKQ 347

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
                    KA+ +E    TH     G  V GK+ ++  FG  +   G +  L  L  +S
Sbjct: 348 C--------KANPWEEFSSTHD---KGQKVTGKIKSITDFGIFIGLEGNIDGLVHLSDIS 396

Query: 533 -EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSY-AEATDRLITH 590
            + E  K  +++K G E+   VL V  +R  ++     +++     ++Y AE     I  
Sbjct: 397 WDVEGDKAVQEYKKGDEIEAVVLQVDPERERISLGIKQIEADP--FNNYLAENKKGSIVT 454

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G I + +  G  V   + V+G+   +++  D   + S++  VG+ V+ + +     +R I
Sbjct: 455 GTILESDAKGAIVTLSDSVEGYIRVADISRDRVEDASTVLKVGESVEAKFVGVDRKNRVI 514

Query: 651 NLSFMMK 657
           +LS   K
Sbjct: 515 SLSIKAK 521



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 43/210 (20%)

Query: 760 HPNSV-VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNI 816
           +P S  + G V N+ + GCFV     + G    S+ +D    ++  SK   +G      +
Sbjct: 273 YPESTRLTGKVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVSLGDMAEVMV 331

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           LD++ E  RI+L LKQ C ++    F               SS H+            G 
Sbjct: 332 LDIDEERRRISLGLKQ-CKANPWEEF---------------SSTHDK-----------GQ 364

Query: 877 VIEGKVHESNDFGVVVSFEEH-------SDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
            + GK+    DFG+ +  E +       SD+  +      A    + G  I+A +L V  
Sbjct: 365 KVTGKIKSITDFGIFIGLEGNIDGLVHLSDI-SWDVEGDKAVQEYKKGDEIEAVVLQVDP 423

Query: 930 AERLVDLSLKTVFIDRFREANSNRQAQKKK 959
               + L +K +  D F    +N  A+ KK
Sbjct: 424 ERERISLGIKQIEADPF----NNYLAENKK 449


>gi|258541164|ref|YP_003186597.1| 30S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01]
 gi|384041085|ref|YP_005479829.1| 30S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-12]
 gi|384049600|ref|YP_005476663.1| 50S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-03]
 gi|384052710|ref|YP_005485804.1| 30S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-07]
 gi|384055942|ref|YP_005488609.1| 30S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-22]
 gi|384058583|ref|YP_005497711.1| 30S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-26]
 gi|384061877|ref|YP_005482519.1| 30S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-32]
 gi|384117953|ref|YP_005500577.1| 30S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|421850084|ref|ZP_16283052.1| SSU ribosomal protein S1 [Acetobacter pasteurianus NBRC 101655]
 gi|421852699|ref|ZP_16285384.1| SSU ribosomal protein S1 [Acetobacter pasteurianus subsp.
           pasteurianus LMG 1262 = NBRC 106471]
 gi|256632242|dbj|BAH98217.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01]
 gi|256635299|dbj|BAI01268.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-03]
 gi|256638354|dbj|BAI04316.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-07]
 gi|256641408|dbj|BAI07363.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-22]
 gi|256644463|dbj|BAI10411.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-26]
 gi|256647518|dbj|BAI13459.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-32]
 gi|256650571|dbj|BAI16505.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653562|dbj|BAI19489.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-12]
 gi|371459080|dbj|GAB28255.1| SSU ribosomal protein S1 [Acetobacter pasteurianus NBRC 101655]
 gi|371479030|dbj|GAB30587.1| SSU ribosomal protein S1 [Acetobacter pasteurianus subsp.
           pasteurianus LMG 1262 = NBRC 106471]
          Length = 572

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 188/475 (39%), Gaps = 81/475 (17%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 560
           VKG    VD  GA+   PG    + P+  +S            +G    F++L +   R 
Sbjct: 128 VKGG-FTVDLGGAMAFLPGSQVDIRPVRDVSPL----------MGVPQPFQILKMDRARG 176

Query: 561 -ITVTHKKTLVKSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
            I V+ +  L +++    S   +  T+ +I  G +  I  +G FV    GV G    +++
Sbjct: 177 NIVVSRRAVLEETRAEQRSELIQGLTEGMILDGVVKNITDYGAFVDL-GGVDGLLHVTDI 235

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGV 676
                  PS    +GQ V+ +++   P ++RI+L          E+  +K   G+  +G 
Sbjct: 236 AWKRINHPSEALQIGQPVRVQVIRFNPETQRISLGMKQLEADPWENVALKYPPGARFTGR 295

Query: 677 VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG------YEFDQLLVL 730
           V  +T      +V  +   +G +       H+   +  K  + PG       E D ++VL
Sbjct: 296 VTNITDYGA--FVELEPGVEGLV-------HVSEMSWTKKNVHPGKIVATSQEVD-VMVL 345

Query: 731 DNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           D +S+   + L  K    N  +Q    A      S V G + NI E G F+     + G 
Sbjct: 346 DVDSAKRRISLGLKQVQRNPWEQF---AEEHKVGSTVEGEIRNITEFGLFIGLSADIDGM 402

Query: 789 APRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
              S  + D    +  K Y  GQ V++ +LDV+ E  RI+L +KQ               
Sbjct: 403 VHMSDLSWDEPGEEAMKHYEKGQVVKAKVLDVDVEKERISLGIKQ--------------- 447

Query: 848 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 907
           L E+  A   +S   GS +      +  + IE KV +               + GFI   
Sbjct: 448 LQEDPAADALASVQKGSIVTCTVTAVQTNGIEVKVDDV--------------LTGFIRRA 493

Query: 908 QLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
           +LA    E        G  + A I+ V +A R + L++K       RE   ++QA
Sbjct: 494 ELARDKAEQRPERFAVGERVDAKIISVDRAARKLALTIKG------REVEEDKQA 542



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 21/260 (8%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKP 498
           ++D+A + +    +  + G  VRV+++ F    + ++ G+  L+A  +E +   +    P
Sbjct: 232 VTDIAWKRINHPSEALQIGQPVRVQVIRFNPETQRISLGMKQLEADPWENVALKYP---P 288

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVL 554
           G    G+V  +  +GA V+   GV+ L    H+SE    K    PGK      E+   VL
Sbjct: 289 GARFTGRVTNITDYGAFVELEPGVEGLV---HVSEMSWTKKNVHPGKIVATSQEVDVMVL 345

Query: 555 GVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V S  +RI++  K+            +   +      G I  I + G F+     + G 
Sbjct: 346 DVDSAKRRISLGLKQVQRNPWEQFAEEHKVGS---TVEGEIRNITEFGLFIGLSADIDGM 402

Query: 613 APRSELGLD-PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKL 669
              S+L  D PG E    Y  GQVVK +++       RI+L         + D L  V+ 
Sbjct: 403 VHMSDLSWDEPGEEAMKHYEKGQVVKAKVLDVDVEKERISLGIKQLQEDPAADALASVQK 462

Query: 670 GSLVSGVVDVVTPNAVVVYV 689
           GS+V+  V  V  N + V V
Sbjct: 463 GSIVTCTVTAVQTNGIEVKV 482



 Score = 47.4 bits (111), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 7/117 (5%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G ++N+T  G FI LS  +D  V +S+LS D   E   K +  G++V  +VL V+   
Sbjct: 379  VEGEIRNITEFGLFIGLSADIDGMVHMSDLSWDEPGEEAMKHYEKGQVVKAKVLDVDVEK 438

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN--TNLVR 1495
            +R+ + +K      A+ +    L+++  G IV   +  V++ G+ + +++  T  +R
Sbjct: 439  ERISLGIKQLQEDPAADA----LASVQKGSIVTCTVTAVQTNGIEVKVDDVLTGFIR 491



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 12/185 (6%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFR 552
           K G  V+G++  +  FG  +     +  +    HMS+    +PG    K ++ G  +  +
Sbjct: 374 KVGSTVEGEIRNITEFGLFIGLSADIDGMV---HMSDLSWDEPGEEAMKHYEKGQVVKAK 430

Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL V  + +RI++  K+         L+S  + +   I    +T ++ +G  V+  + + 
Sbjct: 431 VLDVDVEKERISLGIKQLQEDPAADALASVQKGS---IVTCTVTAVQTNGIEVKVDDVLT 487

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
           GF  R+EL  D   +    + VG+ V  +I+S   A+R++ L+   +     +  + + G
Sbjct: 488 GFIRRAELARDKAEQRPERFAVGERVDAKIISVDRAARKLALTIKGREVEEDKQAINEYG 547

Query: 671 SLVSG 675
           S  SG
Sbjct: 548 SADSG 552



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 13/123 (10%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E I+ L+  MI+ G VKN+T  G F+ L   +D  + +++++   +  P +   IG+ V 
Sbjct: 196  ELIQGLTEGMILDGVVKNITDYGAFVDLG-GVDGLLHVTDIAWKRINHPSEALQIGQPVR 254

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV----GDIVIGQIKRVESYGLFI 1486
             +V+   P ++R+ + +K        Q E +   N+ +    G    G++  +  YG F+
Sbjct: 255  VQVIRFNPETQRISLGMK--------QLEADPWENVALKYPPGARFTGRVTNITDYGAFV 306

Query: 1487 TIE 1489
             +E
Sbjct: 307  ELE 309



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 133/333 (39%), Gaps = 64/333 (19%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH---- 1219
            G R TG V  + +  A + +   ++  + +       SE+   ++  H GK V       
Sbjct: 289  GARFTGRVTNITDYGAFVELEPGVEGLVHV-------SEMSWTKKNVHPGKIVATSQEVD 341

Query: 1220 --VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGV 1274
              VL ++  K+ + L L+  Q            +  + F  E   G  V G I  I    
Sbjct: 342  VMVLDVDSAKRRISLGLKQVQ-----------RNPWEQFAEEHKVGSTVEGEIRNITEF- 389

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
             GL + +   + G VH ++L           +DE   + +  Y++GQ VK KVL++    
Sbjct: 390  -GLFIGLSADIDGMVHMSDLS----------WDEPGEEAMKHYEKGQVVKAKVLDVD--- 435

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                 VE   R SL G+            D     L  ++  S   IV   V  V + G 
Sbjct: 436  -----VEKE-RISL-GIKQLQE-------DPAADALASVQKGS---IVTCTVTAVQTNGI 478

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
             + +   L   +  + L+    E   + F +G+ V  +++SV+  ++++ +T+K  +   
Sbjct: 479  EVKVDDVLTGFIRRAELARDKAEQRPERFAVGERVDAKIISVDRAARKLALTIKGREVEE 538

Query: 1455 ASQSEINNL----SNLHVGDIVIGQIKRVESYG 1483
              Q+ IN      S   +GDI+   I+R  + G
Sbjct: 539  DKQA-INEYGSADSGASLGDILGAAIRRRNTDG 570


>gi|110597804|ref|ZP_01386087.1| RNA binding S1 [Chlorobium ferrooxidans DSM 13031]
 gi|110340529|gb|EAT59012.1| RNA binding S1 [Chlorobium ferrooxidans DSM 13031]
          Length = 596

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 143/353 (40%), Gaps = 38/353 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +   +   +   V
Sbjct: 212 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVV 270

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           +G    +KR+++  K+        I   Y   +      G +  I  +G FV    G++G
Sbjct: 271 VGFDENTKRVSLGMKQLESHPWENIELKYPVGSK---AQGRVVSITDYGAFVEIEKGIEG 327

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               SE+      + P     +GQ V+C I++      +++LS      RV+ED  + L 
Sbjct: 328 LVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHTKLSLSM----KRVNEDPWIALS 383

Query: 670 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
                 SL  G V  +T   V V +       G     H++D      + H +    ++K
Sbjct: 384 EKYIENSLHKGTVSNITDFGVFVEL-----EPGVDGLVHISDLSWTKKIRHPS---ELVK 435

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
              E + ++L  D  +  + L  K        Q P D         +   G +  IIE G
Sbjct: 436 KNQELEVKVLKFDVHARRIALGHK-----QINQDPWDEFEQKYAVGAETPGEISQIIEKG 490

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             V   G + GF P S  + G   D+  ++ +G  +   +++ + E  RI LS
Sbjct: 491 VIVILPGDVDGFVPVSHLLQGGVKDIHSSFKIGDGLPLRVIEFDKENKRIILS 543



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 34/196 (17%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           ++I    V+ G V NI + G FV  LG L G    +    G+    S+   + Q ++  +
Sbjct: 212 ANIKVGMVLEGTVKNITDFGIFVD-LGGLDGLVHITDITWGRINHPSEVVDLDQPIKVVV 270

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           +  +  T R++L +KQ                       L+S      ELK    + +GS
Sbjct: 271 VGFDENTKRVSLGMKQ-----------------------LESHPWENIELK----YPVGS 303

Query: 877 VIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKA 930
             +G+V    D+G  V  E+      H     +  H +  G  V  G  ++  IL++ K 
Sbjct: 304 KAQGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKD 363

Query: 931 ERLVDLSLKTVFIDRF 946
              + LS+K V  D +
Sbjct: 364 HTKLSLSMKRVNEDPW 379



 Score = 41.6 bits (96), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            M+++G VKN+T  G F+ L   LD  V +++++ G +  P +   + + +   V+  +  
Sbjct: 218  MVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVDLDQPIKVVVVGFDEN 276

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +KRV + +K  +S      E+       VG    G++  +  YG F+ IE
Sbjct: 277  TKRVSLGMKQLESHPWENIEL----KYPVGSKAQGRVVSITDYGAFVEIE 322


>gi|338706252|ref|YP_004673020.1| bifunctional cytidylate kinase/30S ribosomal protein S1 [Treponema
           paraluiscuniculi Cuniculi A]
 gi|335344313|gb|AEH40229.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           paraluiscuniculi Cuniculi A]
          Length = 866

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 31/223 (13%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV----KPGKKFKVGAELVFRVLG- 555
           VVKG+V  +  FGA ++   G++ L    H+SEF  V    KP    K+G E+   +LG 
Sbjct: 584 VVKGRVTKIADFGAFIELAEGIEGLA---HISEFSWVKKTSKPSDMVKIGDEVECMILGY 640

Query: 556 -VKSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
            +++ R+++  K+        I + Y   A  T R++      K+   G F+    G+ G
Sbjct: 641 DIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIV------KVTNAGAFIEMEEGIDG 694

Query: 612 FAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED------ 664
           F    +L       P+     VG+ ++C ++   P +RRI L       ++S+D      
Sbjct: 695 FLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGV----KQLSDDPWQVFA 750

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
           +   +GS V G V  VT   + V V   G  +G +  +HL ++
Sbjct: 751 NAYGVGSTVEGEVSSVTDFGIFVRV--PGGVEGLVRKQHLVEN 791



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 140/354 (39%), Gaps = 49/354 (13%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSK 559
           V G V +  SFGA +   GG   L  +  MS   + +P +  K G  +  +V  L    K
Sbjct: 500 VSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 558

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           RI ++ K       L   + +    D  +  G +TKI   G F+    G++G A  SE  
Sbjct: 559 RINLSLKHFQPDPWLEFENKFG-VND--VVKGRVTKIADFGAFIELAEGIEGLAHISEFS 615

Query: 620 -LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSG 675
            +    +PS M  +G  V+C I+     + R++L        P    E            
Sbjct: 616 WVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRR 675

Query: 676 VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +V V    A +         ++V    + K T P +H              ++ G E + 
Sbjct: 676 IVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADH-------------ELEVGKEIEC 722

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-----SVVHGYVCNIIETGCFVR 780
           +++  D ++  + L  K        QL  D   +  N     S V G V ++ + G FVR
Sbjct: 723 MVIECDPQARRIRLGVK--------QLSDDPWQVFANAYGVGSTVEGEVSSVTDFGIFVR 774

Query: 781 FLGRLTGFAPRSKAV---DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             G + G   +   V   DG   +  + Y VG  V++ I+D+N +  ++  S++
Sbjct: 775 VPGGVEGLVRKQHLVENRDGDPDEALRKYAVGDRVKAVIVDMNVKDRKVAFSVR 828



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G VK+ TS G FI L    D  + ++++S G+V  P +    G+ +  +V+ ++   K
Sbjct: 500  VSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 558

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ ++LK        + E    +   V D+V G++ ++  +G FI +
Sbjct: 559  RINLSLKHFQPDPWLEFE----NKFGVNDVVKGRVTKIADFGAFIEL 601


>gi|420190098|ref|ZP_14696042.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM037]
 gi|394258989|gb|EJE03859.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM037]
          Length = 392

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPNEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GEAVKIKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+         ++    GQ V   IL ++ +  RI+LS+K +      
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 IESDASTTQSYL 368



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG  +  +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSF 654
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 47.0 bits (110), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T+ G FI +   +D  V +S LS  +V++PE+   +G+ V  +
Sbjct: 188  LDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSVGEAVKIK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  S+R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  VKSVEKDSERISLSIKD----TLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEI 298



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 55/289 (19%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPNEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            DA          +K ++L S                G VI+GKV    +FG  +     
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI--- 213

Query: 898 SDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             V G +        H Q     V  G  ++  +  V K    + LS+K
Sbjct: 214 GGVDGLVHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIK 262


>gi|418609651|ref|ZP_13172787.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU065]
 gi|374406590|gb|EHQ77482.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU065]
          Length = 392

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 151/372 (40%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKSGLVVDI--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T   V + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGVFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 721 G-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GEAVKVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+         ++    GQ V   IL ++ +  RI+LS+K +      
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 IESDASTTQSYL 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 23/240 (9%)

Query: 424 GLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRVRILGFRHLEGL 476
           GL++DI      P++ +ST      S    + +R K+E+   E + V   IL  + +E L
Sbjct: 122 GLVVDIGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV---ILSRKAVEQL 178

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
                KAS  + L         G V+ GKV  + +FG  +   GGV  L  +  +S   +
Sbjct: 179 ENDAKKASILDSL-------NEGDVIDGKVARLTNFGVFIDI-GGVDGLVHVSELSHEHV 230

Query: 537 VKPGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
             P +   VG   ++  + +   S+RI+++ K TL      I   + E     +  G + 
Sbjct: 231 QTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHEDD---VIEGTVV 287

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++   G FV     VQG    SE+       P+ +   GQ V  +I+     + RI+LS 
Sbjct: 288 RLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSI 347



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 96/237 (40%), Gaps = 45/237 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     +  Y L  S +QL ++ S+      +  + V+   V  ++++G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKSGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDIGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            DA          +K ++L S                G VI+GKV    +FGV +  
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGVFIDI 213


>gi|343496480|ref|ZP_08734576.1| 30S ribosomal protein S1 [Vibrio nigripulchritudo ATCC 27043]
 gi|342821093|gb|EGU55887.1| 30S ribosomal protein S1 [Vibrio nigripulchritudo ATCC 27043]
          Length = 556

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 145/350 (41%), Gaps = 32/350 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E++ +VL 
Sbjct: 189 LQEGTEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLK 247

Query: 556 VKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               R  V+   K+      +AI   Y E        G +T +  +GCFV    GV+G  
Sbjct: 248 FDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHK---LSGRVTNLTDYGCFVEIEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKL 669
             SE+   +    PS + +VG  V+  ++      RRI+L        P +   +   K 
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAK- 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  V+G +  +T   + +     G   G     HL+D   +    ++V   K G E    
Sbjct: 364 GDKVTGKIKSITDFGIFI-----GLEGGIDGLVHLSDISWNVPGEEAVREYKKGDEISAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
           +L +D E   + L  K        Q+ +D   +++  N   ++V+G V  +   G  +  
Sbjct: 419 VLAVDAERERISLGVK--------QMENDPFNAYVADNKKGALVNGTVTAVDAKGATIEL 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +  + G+   S+    +  D S    VG SV +    V+ +   I LS+K
Sbjct: 471 VEGVEGYIRASEVSRDRVEDASLILSVGDSVEAKFTGVDRKNRVINLSIK 520



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 137/352 (38%), Gaps = 45/352 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA------ENSGIDVKPGLLL 280
           LET+QEG  +   VK++ D+G  +  G     G L   ++A       +  ++V   +L+
Sbjct: 186 LETLQEGTEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEILV 243

Query: 281 QGVVRSIDRTR---KVVYLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
           + +    DRTR    +  L  DP             ++I    P G  +S RV ++ + G
Sbjct: 244 KVLKFDRDRTRVSLGLKQLGEDP------------WVAIAKRYPEGHKLSGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N   +V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351

Query: 392 NPY--LLHNRAPPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      +A    V  K+  I D    + ++ G+  L+ +     + P         E
Sbjct: 352 NPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPG--------E 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK  E S V + +   R    L    ++   F   V   +D K G +V G V 
Sbjct: 404 EAVREY-KKGDEISAVVLAVDAERERISLGVKQMENDPFNAYV---ADNKKGALVNGTVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           AVD+ GA ++   GV+       +S   +        VG  +  +  GV  K
Sbjct: 460 AVDAKGATIELVEGVEGYIRASEVSRDRVEDASLILSVGDSVEAKFTGVDRK 511



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 161/380 (42%), Gaps = 44/380 (11%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           A  FE      ++ + G +VKG V+A+++    V    G+K+   +P   +F+      +
Sbjct: 6   AQLFEEF-LNETEFQQGTIVKGTVVAIEN--GFVLVDAGLKSESAIP-AEQFKNAAGELE 61

Query: 543 FKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            +VG E+   +  V+       ++ +K        +L    E  + ++    +   +  G
Sbjct: 62  VEVGTEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVG---VINGKVKG 118

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMM 656
            F    NG++ F P S + + P  + + + +     +V+K  +  +++  SRR   + + 
Sbjct: 119 GFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR---AVIE 175

Query: 657 KPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
               V  D+L++    G+ V G+V  +T     V +   G   G +    +A   ++H +
Sbjct: 176 SENSVERDELLETLQEGTEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS 232

Query: 713 VMKSVIKPGYE-FDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVH 766
               ++  G E   ++L  D + + + L  K        QL  D     A        + 
Sbjct: 233 ---EIVNVGDEILVKVLKFDRDRTRVSLGLK--------QLGEDPWVAIAKRYPEGHKLS 281

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 824
           G V N+ + GCFV     + G    S+ +D    ++  SK   VG  V   +L+++ E  
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVLEIDEERR 340

Query: 825 RITLSLKQSCCSSTDASFMQ 844
           RI+L LKQ C ++   SF +
Sbjct: 341 RISLGLKQ-CKANPWQSFAE 359


>gi|116333424|ref|YP_794951.1| 30S ribosomal protein S1 [Lactobacillus brevis ATCC 367]
 gi|116098771|gb|ABJ63920.1| SSU ribosomal protein S1P [Lactobacillus brevis ATCC 367]
          Length = 434

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  + +FGA V   GGV  L  +  ++   + KP    KVG ++  +VL V +
Sbjct: 206 GDVVDGKVARLTNFGAFVDL-GGVDGLVHVSEIAFERVEKPSDVLKVGQDVKVKVLSVDA 264

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            R  I+++ K+TL +    I     + +      G + ++   G FV  + GV+G    S
Sbjct: 265 DRDRISLSIKQTLPEPWDGIEDKAPQGS---TLDGTVKRLTSFGAFVEVFPGVEGLVHIS 321

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++       P+ +  VGQ +K +++   P   R+ LS 
Sbjct: 322 QISHQHIATPADVLKVGQEIKVKVLDVRPEDHRLALSI 359



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 55/350 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P+ EL   P  +  S+  VG V+   ++S I  S +   S+++   R+      
Sbjct: 52  GVEGVVPKKELSTKPVDDIKSVIKVGDVLDLVVISRI-GSDKEGGSYLLSQRRLEARKVW 110

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           DD+ K    G+ ++  V  V    +VV    +G+   ++ ++H  + L            
Sbjct: 111 DDIQKEFEAGNTLTAPVTQVVKGGLVVDAGVRGFVPASMVSDHFVEDLAQFK-------- 162

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
           G   +  +V    S N L+ +  +++    A Q     + +    VV G V  +   G F
Sbjct: 163 GQTLEFKIVEIEPSENRLILSHRAIVEKQRAAQKEEIMAKLTAGDVVDGKVARLTNFGAF 222

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+    +    S    VGQ V+  +L V+++  RI+LS+KQ+     
Sbjct: 223 VD-LGGVDGLVHVSEIAFERVEKPSDVLKVGQDVKVKVLSVDADRDRISLSIKQTLPEPW 281

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +E+K                      GS ++G V     FG  V  E   
Sbjct: 282 DG--------IEDKAPQ-------------------GSTLDGTVKRLTSFGAFV--EVFP 312

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V G      I+H  +A     ++ G  I+  +LDV   +  + LS+K +
Sbjct: 313 GVEGLVHISQISHQHIATPADVLKVGQEIKVKVLDVRPEDHRLALSIKAL 362



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 149/350 (42%), Gaps = 28/350 (8%)

Query: 496 VKPGMVVKGKVIAVDS-FGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           VK G VVKG+++A+D    AIV     GV+ + P   +S   +       KVG  L   V
Sbjct: 25  VKVGDVVKGEILAIDDDQQAIVGIADTGVEGVVPKKELSTKPVDDIKSVIKVGDVLDLVV 84

Query: 554 LG-VKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           +  + S +      ++ ++   +     +    EA + L     +T++ K G  V    G
Sbjct: 85  ISRIGSDKEGGSYLLSQRRLEARKVWDDIQKEFEAGNTLTAP--VTQVVKGGLVVDA--G 140

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVS--ED 664
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS   +++  R +  E+
Sbjct: 141 VRGFVPASMVS-DHFVEDLAQFK-GQTLEFKIVEIEPSENRLILSHRAIVEKQRAAQKEE 198

Query: 665 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            + KL  G +V G V  +T     V +   G   G +    +A   E       V+K G 
Sbjct: 199 IMAKLTAGDVVDGKVARLTNFGAFVDL---GGVDGLVHVSEIA--FERVEKPSDVLKVGQ 253

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           +   ++L +D +   + LS K +L      +   A      S + G V  +   G FV  
Sbjct: 254 DVKVKVLSVDADRDRISLSIKQTLPEPWDGIEDKAPQ---GSTLDGTVKRLTSFGAFVEV 310

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + G    S+      A  +    VGQ ++  +LDV  E  R+ LS+K
Sbjct: 311 FPGVEGLVHISQISHQHIATPADVLKVGQEIKVKVLDVRPEDHRLALSIK 360



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 376 RILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGLLLDIP 430
           +I+ ++P+   + L+    +   RA       + +  GD+ D  KV R+    G  +D+ 
Sbjct: 169 KIVEIEPSENRLILSHRAIVEKQRAAQKEEIMAKLTAGDVVD-GKVARL-TNFGAFVDLG 226

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
                    V +S++A E V K     K G  V+V++L         +  +K +  E   
Sbjct: 227 GVD----GLVHVSEIAFERVEKPSDVLKVGQDVKVKVLSVDADRDRISLSIKQTLPEPWD 282

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
                   G  + G V  + SFGA V+   GV+ L  +  +S   I  P    KVG E+ 
Sbjct: 283 GIEDKAPQGSTLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPADVLKVGQEIK 342

Query: 551 FRVLGVK 557
            +VL V+
Sbjct: 343 VKVLDVR 349


>gi|378972787|ref|YP_005221391.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pertenue str. SamoaD]
 gi|378981763|ref|YP_005230068.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pertenue str. CDC2]
 gi|374677110|gb|AEZ57403.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pertenue str. SamoaD]
 gi|374678180|gb|AEZ58472.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pertenue str. CDC2]
          Length = 863

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 25/220 (11%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV----KPGKKFKVGAELVFRVLG- 555
           VVKG+V  +  FGA ++   G++ L    H+SEF  V    KP    K+G E+   +LG 
Sbjct: 581 VVKGRVTKIADFGAFIELAEGIEGLA---HISEFSWVKKTSKPSDMVKIGDEVECMILGY 637

Query: 556 -VKSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
            +++ R+++  K+        I + Y   A  T R++      K+   G F+    G+ G
Sbjct: 638 DIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIV------KVTNAGAFIEMEEGIDG 691

Query: 612 FAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
           F    +L       P+     VG+ ++C ++   P +RRI L        P +V   +  
Sbjct: 692 FLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA-NAY 750

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            +GS V G V  VT   + V V   G  +G +  +HL ++
Sbjct: 751 GVGSTVEGEVSSVTDFGIFVRV--PGGVEGLVRKQHLVEN 788



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 144/349 (41%), Gaps = 39/349 (11%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSK 559
           V G V +  SFGA +   GG   L  +  MS   + +P +  K G  +  +V  L    K
Sbjct: 497 VSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           RI ++ K       L   + +    D  +  G +TKI   G F+    G++G A  SE  
Sbjct: 556 RINLSLKHFQPDPWLEFENKFG-VND--VVKGRVTKIADFGAFIELAEGIEGLAHISEFS 612

Query: 620 -LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSG 675
            +    +PS M  +G  V+C I+     + R++L        P    E            
Sbjct: 613 WVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRR 672

Query: 676 VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +V V    A +         ++V    + K T P +H              ++ G E + 
Sbjct: 673 IVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHE-------------LEVGKEIEC 719

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           +++  D ++  + L  K  L ++  Q+ ++A  +   S V G V ++ + G FVR  G +
Sbjct: 720 MVIECDPQARRIRLGVK-QLSDNPWQVFANAYGV--GSTVEGEVSSVTDFGIFVRVPGGV 776

Query: 786 TGFAPRSKAV---DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G   +   V   DG   +  + Y VG  V++ I+D+N +  ++  S++
Sbjct: 777 EGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVR 825



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G VK+ TS G FI L    D  + ++++S G+V  P +    G+ +  +V+ ++   K
Sbjct: 497  VSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ ++LK        + E    +   V D+V G++ ++  +G FI +
Sbjct: 556  RINLSLKHFQPDPWLEFE----NKFGVNDVVKGRVTKIADFGAFIEL 598


>gi|378973854|ref|YP_005222460.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pertenue str. Gauthier]
 gi|374679249|gb|AEZ59540.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pertenue str. Gauthier]
          Length = 863

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 25/220 (11%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV----KPGKKFKVGAELVFRVLG- 555
           VVKG+V  +  FGA ++   G++ L    H+SEF  V    KP    K+G E+   +LG 
Sbjct: 581 VVKGRVTKIADFGAFIELAEGIEGLA---HISEFSWVKKTSKPSDMVKIGDEVECMILGY 637

Query: 556 -VKSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
            +++ R+++  K+        I + Y   A  T R++      K+   G F+    G+ G
Sbjct: 638 DIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIV------KVTNAGAFIEMEEGIDG 691

Query: 612 FAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
           F    +L       P+     VG+ ++C ++   P +RRI L        P +V   +  
Sbjct: 692 FLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA-NAY 750

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            +GS V G V  VT   + V V   G  +G +  +HL ++
Sbjct: 751 GVGSTVEGEVSSVTDFGIFVRV--PGGVEGLVRKQHLVEN 788



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 144/349 (41%), Gaps = 39/349 (11%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSK 559
           V G V +  SFGA +   GG   L  +  MS   + +P +  K G  +  +V  L    K
Sbjct: 497 VSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           RI ++ K       L   + +    D  +  G +TKI   G F+    G++G A  SE  
Sbjct: 556 RINLSLKHFQPDPWLEFENKFG-VND--VVKGRVTKIADFGAFIELAEGIEGLAHISEFS 612

Query: 620 -LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSG 675
            +    +PS M  +G  V+C I+     + R++L        P    E            
Sbjct: 613 WVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRR 672

Query: 676 VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +V V    A +         ++V    + K T P +H              ++ G E + 
Sbjct: 673 IVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHE-------------LEVGKEIEC 719

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           +++  D ++  + L  K  L ++  Q+ ++A  +   S V G V ++ + G FVR  G +
Sbjct: 720 MVIECDPQARRIRLGVK-QLSDNPWQVFANAYGV--GSTVEGEVSSVTDFGIFVRVPGGV 776

Query: 786 TGFAPRSKAV---DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G   +   V   DG   +  + Y VG  V++ I+D+N +  ++  S++
Sbjct: 777 EGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVR 825



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G VK+ TS G FI L    D  + ++++S G+V  P +    G+ +  +V+ ++   K
Sbjct: 497  VSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ ++LK        + E    +   V D+V G++ ++  +G FI +
Sbjct: 556  RINLSLKHFQPDPWLEFE----NKFGVNDVVKGRVTKIADFGAFIEL 598


>gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
            MLS10]
 gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 388

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 152/330 (46%), Gaps = 53/330 (16%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +S+G    G V KV+++ A + +        + +D     SEL       H+ KA  G V
Sbjct: 15   LSVGDVTKGTVSKVEDKQAYVNVG-------YKMDGVVPISELA----SLHVEKA--GDV 61

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTV--DISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
            ++  +E +   + L   +  +S + V  + + +NM   +  G++    ++ ++ G  GLV
Sbjct: 62   INEGEEYEFKVIKLTEDELVLSRRAVAAEKTWENMAEKLESGEVFEAEVADVVKG--GLV 119

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V +G  + G +  + ++   V D             S Y +G+ ++ KV+E+ R      
Sbjct: 120  VDVG--VRGFIPASLVERFYVED------------FSEY-KGKTLRLKVVELDRERNKLI 164

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
               LS R+ LD              +   +  E +  +S   +V G V+ +TS G F+ +
Sbjct: 165  ---LSQRAVLDE-------------EALNQKKETLHSISAGEVVSGTVQRITSFGVFVDI 208

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
               +D  V +S LS  ++E+P +    G  V  +VLSV+P ++R+ +++K +        
Sbjct: 209  G-GVDGLVHISQLSHEHIETPSEVVSEGDEVKVKVLSVDPDNERISLSIKETMPGPWEGV 267

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            E        VGD+V G++KR+ S+G F+ +
Sbjct: 268  E----EQFSVGDVVTGKVKRLVSFGAFVEV 293



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 121/288 (42%), Gaps = 34/288 (11%)

Query: 385 RAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPS---T 432
           + + LT +  +L  RA  +          ++ G+++ +++V  V +G GL++D+      
Sbjct: 71  KVIKLTEDELVLSRRAVAAEKTWENMAEKLESGEVF-EAEVADVVKG-GLVVDVGVRGFI 128

Query: 433 PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGL---ATGILKASAFEG 488
           P S      + D +E         YK G  +R++++   R    L      +L   A   
Sbjct: 129 PASLVERFYVEDFSE---------YK-GKTLRLKVVELDRERNKLILSQRAVLDEEALNQ 178

Query: 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
              T   +  G VV G V  + SFG  V   GGV  L  +  +S   I  P +    G E
Sbjct: 179 KKETLHSISAGEVVSGTVQRITSFGVFVDI-GGVDGLVHISQLSHEHIETPSEVVSEGDE 237

Query: 549 LVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +  +VL V   ++RI+++ K+T+      +   ++      +  G + ++   G FV   
Sbjct: 238 VKVKVLSVDPDNERISLSIKETMPGPWEGVEEQFSVGD---VVTGKVKRLVSFGAFVEVA 294

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            GV+G    S++       P  +   G+ V  +I+      +RI+LS 
Sbjct: 295 KGVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDKRISLSI 342



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 57/294 (19%)

Query: 1200 PSELQEFQRRFHI-------GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            P+ L E   RF++       GK +   V+ +++E+  L L  R   D   ++ ++   + 
Sbjct: 129  PASLVE---RFYVEDFSEYKGKTLRLKVVELDRERNKLILSQRAVLD---EEALNQKKET 182

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1312
            + + I  G++V G + +I S   G+ V IG  + G VH ++L +  +  P     EG   
Sbjct: 183  LHS-ISAGEVVSGTVQRITSF--GVFVDIGG-VDGLVHISQLSHEHIETPSEVVSEG--- 235

Query: 1313 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1372
                 DE   VK KVL +         + LS++ ++ G               P + +E 
Sbjct: 236  -----DE---VKVKVLSVDPD---NERISLSIKETMPG---------------PWEGVE- 268

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
             E  S   +V G VK + S G F+ +++ ++  V +S +++ ++ +P +    G+ V+ +
Sbjct: 269  -EQFSVGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAK 327

Query: 1433 VLSVEPLSKRVEVTLKTSDSRT------ASQSEI---NNLSNLHVGDIVIGQIK 1477
            +L +    KR+ ++++  +  T      A + E       S  ++GD++  Q+K
Sbjct: 328  ILDINLDDKRISLSIRALEEETQEKEASAQKQEFAKDEEQSGFNLGDVIGDQLK 381



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 158/393 (40%), Gaps = 59/393 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 643
           +T G ++K+E    +V     + G  P SEL      +   + + G+  + +++      
Sbjct: 20  VTKGTVSKVEDKQAYVNVGYKMDGVVPISELASLHVEKAGDVINEGEEYEFKVIKLTEDE 79

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE- 702
           +  SRR   +   + T  +  + ++ G +    V  V    +VV V  +G+   ++    
Sbjct: 80  LVLSRR---AVAAEKTWENMAEKLESGEVFEAEVADVVKGGLVVDVGVRGFIPASLVERF 136

Query: 703 HLADHLEH--ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-I 759
           ++ D  E+   T+   V++          LD E + L+LS +  L   A     +  H I
Sbjct: 137 YVEDFSEYKGKTLRLKVVE----------LDRERNKLILSQRAVLDEEALNQKKETLHSI 186

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               VV G V  I   G FV  +G + G    S+         S+    G  V+  +L V
Sbjct: 187 SAGEVVSGTVQRITSFGVFVD-IGGVDGLVHISQLSHEHIETPSEVVSEGDEVKVKVLSV 245

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  RI+LS+K++     +         +EE+                   F +G V+ 
Sbjct: 246 DPDNERISLSIKETMPGPWEG--------VEEQ-------------------FSVGDVVT 278

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAER 932
           GKV     FG  V  E    V G +   Q+A       G  ++ G  + A ILD+   ++
Sbjct: 279 GKVKRLVSFGAFV--EVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDK 336

Query: 933 LVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
            + LS++ +  +  +E  ++ Q Q+  +  E S
Sbjct: 337 RISLSIRALE-EETQEKEASAQKQEFAKDEEQS 368


>gi|227431694|ref|ZP_03913724.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352518|gb|EEJ42714.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 396

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 27/265 (10%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
           GD  D +KV+   RG GL++D+       P S  A   +SD+ + + + ++ +  E    
Sbjct: 110 GDTVD-AKVINAVRG-GLVVDVNGVRGFVPASMVADRFVSDLNQFKNKDIKAQVIEIDAA 167

Query: 464 RVR-ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
           + R IL  + +         A AFE L         G VV+GKV  +  FGA V   GGV
Sbjct: 168 KARLILSRKAVAAQERAAQLAEAFEKLSV-------GEVVEGKVARLTDFGAFVDL-GGV 219

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVK--SKLAILS 578
             L  +  +S   +  P      G  +  ++L + ++  RI+++ K T      K+A   
Sbjct: 220 DGLVHISEISHDRVKNPADVLTKGETVNVKILALDAEKGRISLSIKATQPGPWDKVA--- 276

Query: 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
              EA    +  G + +++  G FV  + G++G    S++       PS +   G  V+ 
Sbjct: 277 --EEAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQV 334

Query: 639 RIMSSIPASRRINLSFMM---KPTR 660
           +++   PA  RI+LS      KP R
Sbjct: 335 QVLDVKPAEERISLSMKALEEKPER 359



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 167/392 (42%), Gaps = 71/392 (18%)

Query: 1085 IGFH----GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSI 1140
            IG H    G +   E +DD+ N+  NL    K+G +V A +I  SN    K+   + LS 
Sbjct: 39   IGLHTGEEGVVPAREYSDDR-NI--NLADELKVGDSVKAVVI--SNVTSDKEGVSYLLSK 93

Query: 1141 KPSMLTVSEIGSKLLFEECDVSIGQRVT----GYVYKVDNEWALLTISRHLKAQLFILDS 1196
            K   L   +    L F E D    + +     G V  V+     +  S  + A  F+   
Sbjct: 94   K--RLEARKAWENLSFGEGDTVDAKVINAVRGGLVVDVNGVRGFVPAS--MVADRFV--- 146

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
                S+L +F+      K +   V+ I+  K   RL+L        ++   ++    + F
Sbjct: 147  ----SDLNQFKN-----KDIKAQVIEIDAAKA--RLILSRKAVAAQERAAQLA----EAF 191

Query: 1257 --IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1314
              +  G++V G+++++     G  V +G  + G VH +E+ +  V +P         D L
Sbjct: 192  EKLSVGEVVEGKVARLTDF--GAFVDLG-GVDGLVHISEISHDRVKNPA--------DVL 240

Query: 1315 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1374
            +   +G+ V  K+L +    +G   + LS++++                  PG   +  E
Sbjct: 241  T---KGETVNVKILALDAE-KG--RISLSIKAT-----------------QPGPWDKVAE 277

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +     +++G VK V   G F+ +   ++  V +S +S   +E+P +    G  V  +VL
Sbjct: 278  EAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQVQVL 337

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1466
             V+P  +R+ +++K  + +   +   N+  +L
Sbjct: 338  DVKPAEERISLSMKALEEKPEREDRGNSKDSL 369



 Score = 43.9 bits (102), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 45/238 (18%)

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE--------HLADHLEHATVMKS 716
           D +K+G +V+G V  V  +   V  +  G  +G +P          +LAD L+    +K+
Sbjct: 16  DQIKVGDVVTGEVLAVDNDNQAVIGLHTG-EEGVVPAREYSDDRNINLADELKVGDSVKA 74

Query: 717 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
           V+         +  D E  + LLS K      A +  S          V   V N +  G
Sbjct: 75  VVISN------VTSDKEGVSYLLSKKRLEARKAWENLS----FGEGDTVDAKVINAVRGG 124

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
             V   G + GF P S   D   +DL++  +  + +++ ++++++   R+ LS +++  +
Sbjct: 125 LVVDVNG-VRGFVPASMVADRFVSDLNQ--FKNKDIKAQVIEIDAAKARLILS-RKAVAA 180

Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              A+ + E F                      E   +G V+EGKV    DFG  V  
Sbjct: 181 QERAAQLAEAF----------------------EKLSVGEVVEGKVARLTDFGAFVDL 216



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 148/355 (41%), Gaps = 67/355 (18%)

Query: 1147 VSEIGSKLL--FEECD-VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
            +SE  ++LL   E  D + +G  VTG V  VDN+   + I  H   +  +    Y     
Sbjct: 1    MSETNNELLAALESADQIKVGDVVTGEVLAVDNDNQAV-IGLHTGEEGVVPAREYSDDRN 59

Query: 1204 QEFQRRFHIGKAVTGHVLS-INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1262
                    +G +V   V+S +  +K+ +  +L       S K ++           EGD 
Sbjct: 60   INLADELKVGDSVKAVVISNVTSDKEGVSYLL-------SKKRLEARKAWENLSFGEGDT 112

Query: 1263 VGGRISKILSGV-GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1321
            V    +K+++ V GGLVV +   + G V  + + +  VSD        QF       + +
Sbjct: 113  VD---AKVINAVRGGLVVDVN-GVRGFVPASMVADRFVSDL------NQF-------KNK 155

Query: 1322 FVKCKVLEI----SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
             +K +V+EI    +R +     V    R++                    +  E  E LS
Sbjct: 156  DIKAQVIEIDAAKARLILSRKAVAAQERAA--------------------QLAEAFEKLS 195

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
               +V+G V  +T  G F+ L   +D  V +S +S   V++P      G+ V  ++L+++
Sbjct: 196  VGEVVEGKVARLTDFGAFVDLG-GVDGLVHISEISHDRVKNPADVLTKGETVNVKILALD 254

Query: 1438 PLSKRVEVTLKTSD----SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                R+ +++K +      + A ++          G ++ G +KRV+ +G F+ I
Sbjct: 255  AEKGRISLSIKATQPGPWDKVAEEA--------PAGTVLEGTVKRVKDFGAFVEI 301



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 149/352 (42%), Gaps = 34/352 (9%)

Query: 496 VKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +K G VV G+V+AVD+   A++    G + + P    S+   +    + KVG  +   V+
Sbjct: 18  IKVGDVVTGEVLAVDNDNQAVIGLHTGEEGVVPAREYSDDRNINLADELKVGDSVKAVVI 77

Query: 555 -GVKSKRITVTH---KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
             V S +  V++   KK L   K     S+ E     +    I  +   G  V   NGV+
Sbjct: 78  SNVTSDKEGVSYLLSKKRLEARKAWENLSFGEGD--TVDAKVINAV--RGGLVVDVNGVR 133

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS-----FMMKPTRVSED- 664
           GF P S +  D      + +   + +K +++    A  R+ LS        +  +++E  
Sbjct: 134 GFVPASMVA-DRFVSDLNQFK-NKDIKAQVIEIDAAKARLILSRKAVAAQERAAQLAEAF 191

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGY 722
           + + +G +V G V  +T     V +   G   G +   H+++ + H  V     V+  G 
Sbjct: 192 EKLSVGEVVEGKVARLTDFGAFVDL---GGVDGLV---HISE-ISHDRVKNPADVLTKGE 244

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFV 779
             + ++L LD E   + LS     I + Q  P D  A      +V+ G V  + + G FV
Sbjct: 245 TVNVKILALDAEKGRISLS-----IKATQPGPWDKVAEEAPAGTVLEGTVKRVKDFGAFV 299

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                + G    S+    +  + S+    G  V+  +LDV     RI+LS+K
Sbjct: 300 EIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQVQVLDVKPAEERISLSMK 351


>gi|283798175|ref|ZP_06347328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
           M62/1]
 gi|291074158|gb|EFE11522.1| putative ribosomal protein S1 [Clostridium sp. M62/1]
 gi|295091663|emb|CBK77770.1| Ribosomal protein S1 [Clostridium cf. saccharolyticum K10]
          Length = 375

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 14/249 (5%)

Query: 406 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 465
           KV  + D+  VV V+   G  + IP++ VS      +S  A +E+  +  ++   S  R 
Sbjct: 115 KVTQVVDKGLVVEVE---GTRVFIPASMVSDTYDKDLSKYAGQEIEFVITEFNP-SGRRS 170

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
           RI+G R        + K +A +  +F   +V  G  V+G V  V  FGA +   GG   L
Sbjct: 171 RIIGDRR----QLLMEKKAAMQKELFERIEV--GQTVEGVVKNVTDFGAFIDL-GGADGL 223

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATD 585
             +  MS   +  P K FKVG  +   +  +  ++I ++ K             YA  + 
Sbjct: 224 LHISEMSWGRVENPKKVFKVGETVKALIKDINGEKIALSLKFPETNPWANAAEKYAVGS- 282

Query: 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G + ++   G FV    GV      S++  +   +PS +  VGQV+K +++    
Sbjct: 283 --VVEGKVARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLSVGQVIKAKVVDFNE 340

Query: 646 ASRRINLSF 654
           A R+I+LS 
Sbjct: 341 ADRKISLSI 349



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 41/192 (21%)

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            I     V G V N+ + G F+  LG   G    S+   G+  +  K + VG++V++ I 
Sbjct: 194 RIEVGQTVEGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFKVGETVKALIK 252

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV---EGFII 874
           D+N E  +I LSLK    +                               W    E + +
Sbjct: 253 DINGE--KIALSLKFPETNP------------------------------WANAAEKYAV 280

Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAK 929
           GSV+EGKV    DFG  V  E   D    ++     H +     +  G VI+A ++D  +
Sbjct: 281 GSVVEGKVARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLSVGQVIKAKVVDFNE 340

Query: 930 AERLVDLSLKTV 941
           A+R + LS+K +
Sbjct: 341 ADRKISLSIKAL 352



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 155/347 (44%), Gaps = 50/347 (14%)

Query: 1147 VSEIGSKLLFEECDVS---IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
            +SE+  + +FEE  +     G+ VTG V  V+++  +L+I+   K++  I  + Y     
Sbjct: 1    MSELSFEQMFEESSIKRLRAGETVTGQVISVNDDEIILSIAGS-KSEGIIPKNEYSNDPS 59

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
                ++  +G  +   VL +N  + +  L  +      +DK V      ++      +++
Sbjct: 60   VVLTQKVQVGDEMEAKVLKVNDGEGMAALSYKKLA---ADKGVK----RLKEAFENKEVL 112

Query: 1264 GGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
              ++++++    GLVV++ G  ++       +    VSD    YD+     LS Y  GQ 
Sbjct: 113  KEKVTQVVDK--GLVVEVEGTRVF-------IPASMVSDT---YDK----DLSKY-AGQE 155

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1382
            ++  + E + + R         RS + G    +   L  +        E  E +     V
Sbjct: 156  IEFVITEFNPSGR---------RSRIIG----DRRQLLME-KKAAMQKELFERIEVGQTV 201

Query: 1383 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
            +G VKNVT  G FI L    D  + +S +S G VE+P+K F +G+ V   +  +    ++
Sbjct: 202  EGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFKVGETVKALIKDIN--GEK 258

Query: 1443 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            + ++LK  ++   +    N      VG +V G++ R+  +G F+ +E
Sbjct: 259  IALSLKFPETNPWA----NAAEKYAVGSVVEGKVARMTDFGAFVELE 301



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 148/362 (40%), Gaps = 31/362 (8%)

Query: 485 AFEGLVFTHSDVK---PGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPG 540
           +FE + F  S +K    G  V G+VI+V+    I+   G   + + P    S    V   
Sbjct: 5   SFEQM-FEESSIKRLRAGETVTGQVISVNDDEIILSIAGSKSEGIIPKNEYSNDPSVVLT 63

Query: 541 KKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           +K +VG E+  +VL V        +++KK      +  L    E  ++ +    +T++  
Sbjct: 64  QKVQVGDEMEAKVLKVNDGEGMAALSYKKLAADKGVKRLKEAFE--NKEVLKEKVTQVVD 121

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL-----S 653
            G  V    G + F P S +  D   +  S Y  GQ ++  I    P+ RR  +      
Sbjct: 122 KGLVVEV-EGTRVFIPASMVS-DTYDKDLSKY-AGQEIEFVITEFNPSGRRSRIIGDRRQ 178

Query: 654 FMMKPTRVSEDDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLE 709
            +M+     + +L   +++G  V GVV  VT     + +   G + G +    ++   +E
Sbjct: 179 LLMEKKAAMQKELFERIEVGQTVEGVVKNVTDFGAFIDL---GGADGLLHISEMSWGRVE 235

Query: 710 HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
           +    K V K G E  + L+ D     + LS K+   N      + A      SVV G V
Sbjct: 236 NP---KKVFKVG-ETVKALIKDINGEKIALSLKFPETNP---WANAAEKYAVGSVVEGKV 288

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             + + G FV     +      S+         S    VGQ +++ ++D N    +I+LS
Sbjct: 289 ARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLSVGQVIKAKVVDFNEADRKISLS 348

Query: 830 LK 831
           +K
Sbjct: 349 IK 350


>gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025513|ref|YP_001933285.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum SS14]
 gi|378974916|ref|YP_005223524.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum DAL-1]
 gi|3322552|gb|AAC65266.1| ribosomal protein S1 (rpsA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018088|gb|ACD70706.1| ribosomal protein S1 [Treponema pallidum subsp. pallidum SS14]
 gi|374680314|gb|AEZ60604.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum DAL-1]
          Length = 863

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 25/220 (11%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV----KPGKKFKVGAELVFRVLG- 555
           VVKG+V  +  FGA ++   G++ L    H+SEF  V    KP    K+G E+   +LG 
Sbjct: 581 VVKGRVTKIADFGAFIELAEGIEGLA---HISEFSWVKKTSKPSDMVKIGDEVECMILGY 637

Query: 556 -VKSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
            +++ R+++  K+        I + Y   A  T R++      K+   G F+    G+ G
Sbjct: 638 DIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIV------KVTNAGAFIEMEEGIDG 691

Query: 612 FAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
           F    +L       P+     VG+ ++C ++   P +RRI L        P +V   +  
Sbjct: 692 FLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA-NAY 750

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            +GS V G V  VT   + V V   G  +G +  +HL ++
Sbjct: 751 GVGSTVEGEVSSVTDFGIFVRV--PGGVEGLVRKQHLVEN 788



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 144/349 (41%), Gaps = 39/349 (11%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSK 559
           V G V +  SFGA +   GG   L  +  MS   + +P +  K G  +  +V  L    K
Sbjct: 497 VSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           RI ++ K       L   + +    D  +  G +TKI   G F+    G++G A  SE  
Sbjct: 556 RINLSLKHFQPDPWLEFENKFG-VND--VVKGRVTKIADFGAFIELAEGIEGLAHISEFS 612

Query: 620 -LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSG 675
            +    +PS M  +G  V+C I+     + R++L        P    E            
Sbjct: 613 WVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRR 672

Query: 676 VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +V V    A +         ++V    + K T P +H              ++ G E + 
Sbjct: 673 IVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHE-------------LEVGKEIEC 719

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           +++  D ++  + L  K  L ++  Q+ ++A  +   S V G V ++ + G FVR  G +
Sbjct: 720 MVIECDPQARRIRLGVK-QLSDNPWQVFANAYGV--GSTVEGEVSSVTDFGIFVRVPGGV 776

Query: 786 TGFAPRSKAV---DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G   +   V   DG   +  + Y VG  V++ I+D+N +  ++  S++
Sbjct: 777 EGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVR 825



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G VK+ TS G FI L    D  + ++++S G+V  P +    G+ +  +V+ ++   K
Sbjct: 497  VSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ ++LK        + E    +   V D+V G++ ++  +G FI +
Sbjct: 556  RINLSLKHFQPDPWLEFE----NKFGVNDVVKGRVTKIADFGAFIEL 598


>gi|410861852|ref|YP_006977086.1| 30S ribosomal protein S1 [Alteromonas macleodii AltDE1]
 gi|410819114|gb|AFV85731.1| 30S ribosomal protein S1 [Alteromonas macleodii AltDE1]
          Length = 556

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 145/347 (41%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  +KG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLEEGHEIKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 245

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    + +R+++  K+        I S Y E T     +G +T +  +GCFV   +GV+G
Sbjct: 246 LKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTK---INGQVTNLTDYGCFVEIEDGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    PS + ++G  V   ++      RRI+L     +  P     +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHE 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   + +   +V   K G E  
Sbjct: 363 K-GDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNKSGEDAVRDYKKGDEIS 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  +D       ++V G V  +   G  V     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLTDNK---KGAIVTGTVTAVDAKGVTVNLAEE 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   +     +  D ++   VG S+ +  + V+ +   + LS++
Sbjct: 474 VDGYIRVADLAVERVEDATEVASVGDSIEAKFMGVDRKNRTVNLSVR 520



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 157/362 (43%), Gaps = 27/362 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +VKG V+++D    IV    G+K+   +P   +F+  +   +  +G ++   + 
Sbjct: 17  ETRPGSIVKGTVVSIDK--DIVLVDAGLKSESAIP-ADQFKNAEGELEIAIGDQVDVALD 73

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            V+         +   K   A +       D+    G I    K G F    N V+ F P
Sbjct: 74  AVEDGFGETILSREKAKRHEAWVELEKAYDDKATIKGVINGKVK-GGFTVEVNSVRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
            S + + P  + + +   G+ ++ +++      +++  SRR  +       R +    ++
Sbjct: 133 GSLVDVRPVRDTTHLE--GKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERETLLANLE 190

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G  + G+V  +T     V +   G   G +    +A   ++H +    ++  G E + +
Sbjct: 191 EGHEIKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINVK 244

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L  D E   + L  K    +  Q++   AS     + ++G V N+ + GCFV     + 
Sbjct: 245 VLKFDKEKQRVSLGMKQMGNDPWQEI---ASRYPEGTKINGQVTNLTDYGCFVEIEDGVE 301

Query: 787 GFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           G    S+ +D    ++  SK   +G +V   +L+++ E  RI+L LKQ C ++   +F +
Sbjct: 302 GLVHVSE-MDWTNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQ-CIANPWETFAE 359

Query: 845 EH 846
            H
Sbjct: 360 SH 361


>gi|379021190|ref|YP_005297852.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M013]
 gi|387602749|ref|YP_005734270.1| putative 30S ribosomal protein S1 homolog [Staphylococcus aureus
           subsp. aureus ST398]
 gi|404478823|ref|YP_006710253.1| 30S ribosomal protein S1 [Staphylococcus aureus 08BA02176]
 gi|418310337|ref|ZP_12921882.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21331]
 gi|418951544|ref|ZP_13503630.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-160]
 gi|283470687|emb|CAQ49898.1| putative 30S ribosomal protein S1 homolog [Staphylococcus aureus
           subsp. aureus ST398]
 gi|359830499|gb|AEV78477.1| SSU ribosomal protein S1p [Staphylococcus aureus subsp. aureus
           M013]
 gi|365237077|gb|EHM77944.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21331]
 gi|375372517|gb|EHS76255.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           IS-160]
 gi|404440312|gb|AFR73505.1| putative 30S ribosomal protein S1 [Staphylococcus aureus 08BA02176]
          Length = 391

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +         N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFRENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 48.5 bits (114), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 169/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFRENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373



 Score = 47.0 bits (110), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 40.4 bits (93), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIG-GVDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFRENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350


>gi|450116325|ref|ZP_21864404.1| 30S ribosomal protein S1 [Streptococcus mutans ST1]
 gi|449226986|gb|EMC26444.1| 30S ribosomal protein S1 [Streptococcus mutans ST1]
          Length = 399

 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG +V  +V+ VD   A +   G GV+A+  L  ++        + VK
Sbjct: 4   FEDLLNSVSEVNPGDIVTAEVLTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         D +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGDVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA------SRRIN 651
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    P+      SRR  
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQQFEAKIKEIDPSENRFILSRRDV 175

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           +       R      + +G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEAAAAKAREEVFSRLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHITELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SRLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHITELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +  +R  +  SN   RQ++ +++KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALE-ERPAQDESNGEKRQSRPRRQKRQDKRDYELPET 384



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D+
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQDE 358



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHITELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTASQSEIN 1461
             +RV +++K  + R A Q E N
Sbjct: 340  DERVSLSIKALEERPA-QDESN 360



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 298


>gi|450055581|ref|ZP_21841863.1| 30S ribosomal protein S1 [Streptococcus mutans NLML4]
 gi|449207389|gb|EMC08066.1| 30S ribosomal protein S1 [Streptococcus mutans NLML4]
          Length = 399

 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +++ VD   A +   G GV+A+  L  ++        + VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEILTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         D +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGDVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA------SRRIN 651
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    P+      SRR  
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQQFEAKIKEIDPSENRFILSRRDV 175

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           +       R      + +G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEAAAAKAREEVFSRLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHITELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SRLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHITELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +  +R  +  SN   RQ++ +++KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALE-ERPAQDESNGEKRQSRPRRQKRQDKRDYELPET 384



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D+
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQDE 358



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHITELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTASQSEIN 1461
             +RV +++K  + R A Q E N
Sbjct: 340  DERVSLSIKALEERPA-QDESN 360



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 298


>gi|433449333|ref|ZP_20412197.1| 30S ribosomal protein S1 [Weissella ceti NC36]
 gi|429538847|gb|ELA06885.1| 30S ribosomal protein S1 [Weissella ceti NC36]
          Length = 416

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
           S    GDI  ++ V +V +G GL++D+         +V  S +    V+ L  +YK G  
Sbjct: 108 SKFNAGDIV-EAPVTQVVKG-GLVVDV----AGVRGFVPASMIENRFVQDL-NQYK-GQT 159

Query: 463 VRVRILGFRHLEGLAT----GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
           +R +I+     E         +L     E L    +++  G VV+GKV  + +FGA +  
Sbjct: 160 IRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAFIDL 219

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            GGV  L  +  +S   + +P     VG ++  ++LG+  + +RI+++ K T      A 
Sbjct: 220 -GGVDGLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKATQPGPWEAA 278

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
             +  E T   +  G + ++   G FV  + GV+G    S++       P+ +   G  V
Sbjct: 279 AENAPEGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKV 335

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  +R++LS 
Sbjct: 336 NVKVLEVNPDKQRLSLSI 353



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 37/229 (16%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV   +++++ G  GLVV +   + G V  + ++N  V D            L+ Y +
Sbjct: 113  GDIVEAPVTQVVKG--GLVVDVA-GVRGFVPASMIENRFVQD------------LNQY-K 156

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            GQ ++ K++EI  T      + LS R  L+   S   S +               +L+  
Sbjct: 157  GQTIRAKIIEIDPT---ESRLILSRRDVLNEERSEALSRI-------------FNELAEG 200

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G  V  ++L ++P 
Sbjct: 201  DVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPE 259

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             +R+ +++K +       +      N   G ++ G +KRV  +G F+ +
Sbjct: 260  KERISLSIKATQPGPWEAA----AENAPEGTVLEGTVKRVVDFGAFVEV 304



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 153/390 (39%), Gaps = 64/390 (16%)

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--VQGFAPRSELGLDPGCEPSSMYH 631
           LA L S AE     +  G +  I+ +   +    G  V+G  P  EL  D   + + +  
Sbjct: 9   LAALDSVAEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPMRELTSDRDADVNDLVK 68

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVS-----EDDLVKL--GSLVSGVVDVVTPNA 684
           VG V+   ++S+I  S +   S+++   R+      E+   K   G +V   V  V    
Sbjct: 69  VGDVIDLVVVSTI-GSDKEGGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGG 127

Query: 685 VVVYVIA-KGYSKGTIPTEHLADHLEH---ATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
           +VV V   +G+   ++        L      T+   +I+          +D   S L+LS
Sbjct: 128 LVVDVAGVRGFVPASMIENRFVQDLNQYKGQTIRAKIIE----------IDPTESRLILS 177

Query: 741 AKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            +  ++N   ++ L    + +    VV G V  +   G F+  LG + G    S+    +
Sbjct: 178 -RRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAFID-LGGVDGLVHVSEISHDR 235

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 858
            +  S    VG  V+  IL ++ E  RI+LS+K +     +A+                 
Sbjct: 236 VSQPSDVLAVGDDVKVKILGLDPEKERISLSIKATQPGPWEAA----------------- 278

Query: 859 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------G 911
              N  E         G+V+EG V    DFG  V  E    V G +   Q+A        
Sbjct: 279 -AENAPE---------GTVLEGTVKRVVDFGAFV--EVFPGVEGLVHVSQIAHKHVNNPA 326

Query: 912 ATVESGSVIQAAILDVAKAERLVDLSLKTV 941
             + +G  +   +L+V   ++ + LS+K +
Sbjct: 327 DVLTAGDKVNVKVLEVNPDKQRLSLSIKAL 356



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 153/360 (42%), Gaps = 43/360 (11%)

Query: 494 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           ++VK G VVKG+V+A+D +   IV   G GV+ + P+  ++           KVG  +  
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPMRELTSDRDADVNDLVKVGDVIDL 75

Query: 552 RVLGVKSKRITVTHKKT-----LVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCF 602
            V+       T+   K      L K +L    ++ E   +     I    +T++ K G  
Sbjct: 76  VVVS------TIGSDKEGGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGGLV 129

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
           V    GV+GF P S +  +   +  + Y  GQ ++ +I+   P   R+ LS         
Sbjct: 130 VDVA-GVRGFVPASMI-ENRFVQDLNQYK-GQTIRAKIIEIDPTESRLILSRRDVLNEER 186

Query: 663 EDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK- 715
            + L ++      G +V G V  +T     + +   G   G +   H+++ + H  V + 
Sbjct: 187 SEALSRIFNELAEGDVVEGKVARMTNFGAFIDL---GGVDGLV---HVSE-ISHDRVSQP 239

Query: 716 -SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCN 771
             V+  G +   ++L LD E   + LS     I + Q  P +A+  +    +V+ G V  
Sbjct: 240 SDVLAVGDDVKVKILGLDPEKERISLS-----IKATQPGPWEAAAENAPEGTVLEGTVKR 294

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G FV     + G    S+       + +     G  V   +L+VN +  R++LS+K
Sbjct: 295 VVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKVNVKVLEVNPDKQRLSLSIK 354


>gi|422341619|ref|ZP_16422560.1| cytidylate kinase/ribosomal protein S1 [Treponema denticola F0402]
 gi|449108881|ref|ZP_21745522.1| ribosomal protein S1 [Treponema denticola ATCC 33520]
 gi|325474458|gb|EGC77645.1| cytidylate kinase/ribosomal protein S1 [Treponema denticola F0402]
 gi|448961156|gb|EMB41864.1| ribosomal protein S1 [Treponema denticola ATCC 33520]
          Length = 811

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 142/359 (39%), Gaps = 45/359 (12%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + K G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V+
Sbjct: 439 NTKIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVI 497

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQ 610
                R+   +K+  +  K      + +  D+     I  G +TK    G F+    G++
Sbjct: 498 -----RLDPENKRINLSLKHFTQDPWLQFEDKFHVEDIVTGTVTKTTDFGAFIELDEGIE 552

Query: 611 GFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDL 666
           G A  SE   +    +P  +   G  V C I+     + R++L        P    E+  
Sbjct: 553 GLAHISEFSWVKKINKPEDILKPGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTIEERY 612

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYE 723
                L   VV +    A              I  E   D   HA   + +K V  PG E
Sbjct: 613 PVGTRLTRKVVKITNAGAF-------------ISLEEGIDGFLHADDISWIKRVKHPGSE 659

Query: 724 FD-----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
            +     +++V+  D ES  + L  K    +  ++     +     S+V G V +I + G
Sbjct: 660 LEVDQEIEVIVIECDAESRRIRLGIKQLTDDPWEKF---GAAYKVGSIVEGEVSSITDFG 716

Query: 777 CFVRFLGRLTGFAPRSKAVDGQ----RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            FV+  G + G   +   V+ +       L+K Y VG  +++ ++++N    +   S+K
Sbjct: 717 VFVKVPGDIEGLIHKQNLVESRDETPEEALAK-YAVGDKIKAVVIEINPRNKKTAFSIK 774



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 115/554 (20%), Positives = 208/554 (37%), Gaps = 109/554 (19%)

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           + +E  + G ++A   E  +      + G + +G V+AV++    V   G  +   PL  
Sbjct: 245 KDVEKDSNGNIQAQLQEEYLNNFEAPEAGTIKEGYVVAVNNGTVFVDVGGKSEGHIPLDE 304

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLIT 589
             E    +P    KV  ++   +   +S    ++  K L   +L +   + +A  D+   
Sbjct: 305 FDE----EP----KVNDKVNVLIEKTESSNGHLSVSK-LKADRLILQKEFKQAYADKTPI 355

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQV-VKCRIMS 642
            G I K  + G  V+   G+  F P S+  +    +P ++      +++ ++    R   
Sbjct: 356 DGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLVGVKSKFYIEKLSFNSRSGE 415

Query: 643 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           +I  +RR  +    +  R +     K+G  V G V   T     + +   G   G +   
Sbjct: 416 NIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTVKSFTSFGAFIDL---GGFDGLL--- 469

Query: 703 HLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           H+ D    H T  K  +K G E + +++ LD E+  + LS K+   +   Q        H
Sbjct: 470 HINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKRINLSLKHFTQDPWLQF---EDKFH 526

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSN 815
              +V G V    + G F+     + G A  S     K ++ +  D+ K    G  V   
Sbjct: 527 VEDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKIN-KPEDILKP---GDKVTCM 582

Query: 816 ILDVNSETGRITLSLKQSCCSSTD----------------------ASFMQ-----EHFL 848
           IL  + + GR++L LKQ   +  D                       +F+      + FL
Sbjct: 583 ILGYDIQAGRVSLGLKQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFL 642

Query: 849 LEEKIAMLQSSKHNGSEL---------------------------------KWVEGFIIG 875
             + I+ ++  KH GSEL                                 K+   + +G
Sbjct: 643 HADDISWIKRVKHPGSELEVDQEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVG 702

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAIL 925
           S++EG+V    DFGV V      D+ G I    L  +  E+          G  I+A ++
Sbjct: 703 SIVEGEVSSITDFGVFVKV--PGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVI 760

Query: 926 DVAKAERLVDLSLK 939
           ++    +    S+K
Sbjct: 761 EINPRNKKTAFSIK 774



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P +K
Sbjct: 446  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENK 504

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK        Q E       HV DIV G + +   +G FI ++
Sbjct: 505  RINLSLKHFTQDPWLQFE----DKFHVEDIVTGTVTKTTDFGAFIELD 548


>gi|449119570|ref|ZP_21755966.1| ribosomal protein S1 [Treponema denticola H1-T]
 gi|449121961|ref|ZP_21758307.1| ribosomal protein S1 [Treponema denticola MYR-T]
 gi|448949402|gb|EMB30227.1| ribosomal protein S1 [Treponema denticola MYR-T]
 gi|448950560|gb|EMB31382.1| ribosomal protein S1 [Treponema denticola H1-T]
          Length = 811

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 142/359 (39%), Gaps = 45/359 (12%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + K G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V+
Sbjct: 439 NTKIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVI 497

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQ 610
                R+   +K+  +  K      + +  D+     I  G +TK    G F+    G++
Sbjct: 498 -----RLDPENKRINLSLKHFTQDPWLQFEDKFHVEDIVTGTVTKTTDFGAFIELDEGIE 552

Query: 611 GFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDL 666
           G A  SE   +    +P  +   G  V C I+     + R++L        P    E+  
Sbjct: 553 GLAHISEFSWVKKINKPEDILKPGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTIEERY 612

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYE 723
                L   VV +    A              I  E   D   HA   + +K V  PG E
Sbjct: 613 PVGTRLTRKVVKITNAGAF-------------ISLEEGIDGFLHADDISWIKRVKHPGSE 659

Query: 724 FD-----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
            +     +++V+  D ES  + L  K    +  ++     +     S+V G V +I + G
Sbjct: 660 LEVGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKF---GAAYKVGSIVEGEVSSITDFG 716

Query: 777 CFVRFLGRLTGFAPRSKAVDGQ----RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            FV+  G + G   +   V+ +       L+K Y VG  +++ ++++N    +   S+K
Sbjct: 717 VFVKVPGDIEGLIHKQNLVESRDETPEEALAK-YAVGDKIKAVVIEINPRNKKTAFSIK 774



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 115/554 (20%), Positives = 208/554 (37%), Gaps = 109/554 (19%)

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           + +E  + G ++A   E  +      + G + +G V+AV++    V   G  +   PL  
Sbjct: 245 KDVEKDSNGNIQAQLQEEYLNNFEAPEAGTIKEGYVVAVNNGTVFVDVGGKSEGHIPLDE 304

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLIT 589
             E    +P    KV  ++   +   +S    ++  K L   +L +   + +A  D+   
Sbjct: 305 FDE----EP----KVNDKVNVLIEKTESSNGHLSVSK-LKADRLILQKEFKQAYADKTPI 355

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQV-VKCRIMS 642
            G I K  + G  V+   G+  F P S+  +    +P ++      +++ ++    R   
Sbjct: 356 DGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLVGVKSKFYIEKLSFNSRSGE 415

Query: 643 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           +I  +RR  +    +  R +     K+G  V G V   T     + +   G   G +   
Sbjct: 416 NIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTVKSFTSFGAFIDL---GGFDGLL--- 469

Query: 703 HLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           H+ D    H T  K  +K G E + +++ LD E+  + LS K+   +   Q        H
Sbjct: 470 HINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKRINLSLKHFTQDPWLQF---EDKFH 526

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSN 815
              +V G V    + G F+     + G A  S     K ++ +  D+ K    G  V   
Sbjct: 527 VEDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKIN-KPEDILKP---GDKVTCM 582

Query: 816 ILDVNSETGRITLSLKQSCCSSTD----------------------ASFMQ-----EHFL 848
           IL  + + GR++L LKQ   +  D                       +F+      + FL
Sbjct: 583 ILGYDIQAGRVSLGLKQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFL 642

Query: 849 LEEKIAMLQSSKHNGSEL---------------------------------KWVEGFIIG 875
             + I+ ++  KH GSEL                                 K+   + +G
Sbjct: 643 HADDISWIKRVKHPGSELEVGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVG 702

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAIL 925
           S++EG+V    DFGV V      D+ G I    L  +  E+          G  I+A ++
Sbjct: 703 SIVEGEVSSITDFGVFVKV--PGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVI 760

Query: 926 DVAKAERLVDLSLK 939
           ++    +    S+K
Sbjct: 761 EINPRNKKTAFSIK 774



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P +K
Sbjct: 446  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENK 504

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK        Q E       HV DIV G + +   +G FI ++
Sbjct: 505  RINLSLKHFTQDPWLQFE----DKFHVEDIVTGTVTKTTDFGAFIELD 548


>gi|42527583|ref|NP_972681.1| cytidylate kinase [Treponema denticola ATCC 35405]
 gi|449111411|ref|ZP_21748008.1| ribosomal protein S1 [Treponema denticola ATCC 33521]
 gi|449113774|ref|ZP_21750257.1| ribosomal protein S1 [Treponema denticola ATCC 35404]
 gi|41818168|gb|AAS12592.1| cytidylate kinase/ribosomal protein S1 [Treponema denticola ATCC
           35405]
 gi|448957857|gb|EMB38596.1| ribosomal protein S1 [Treponema denticola ATCC 35404]
 gi|448958438|gb|EMB39169.1| ribosomal protein S1 [Treponema denticola ATCC 33521]
          Length = 811

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 142/359 (39%), Gaps = 45/359 (12%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + K G  VKG V +  SFGA +   GG   L  +  MS   + +P    K G E+  +V+
Sbjct: 439 NTKIGDTVKGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVI 497

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQ 610
                R+   +K+  +  K      + +  D+     I  G +TK    G F+    G++
Sbjct: 498 -----RLDPENKRINLSLKHFTQDPWLQFEDKFHVEDIVTGTVTKTTDFGAFIELDEGIE 552

Query: 611 GFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDL 666
           G A  SE   +    +P  +   G  V C I+     + R++L        P    E+  
Sbjct: 553 GLAHISEFSWVKKINKPEDILKPGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTIEERY 612

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA---TVMKSVIKPGYE 723
                L   VV +    A              I  E   D   HA   + +K V  PG E
Sbjct: 613 PVGTRLTRKVVKITNAGAF-------------ISLEEGIDGFLHADDISWIKRVKHPGSE 659

Query: 724 FD-----QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
            +     +++V+  D ES  + L  K    +  ++     +     S+V G V +I + G
Sbjct: 660 LEVGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKF---GAAYKVGSIVEGEVSSITDFG 716

Query: 777 CFVRFLGRLTGFAPRSKAVDGQ----RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            FV+  G + G   +   V+ +       L+K Y VG  +++ ++++N    +   S+K
Sbjct: 717 VFVKVPGDIEGLIHKQNLVESRDETPEEALAK-YAVGDKIKAVVIEINPRNKKTAFSIK 774



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 115/554 (20%), Positives = 208/554 (37%), Gaps = 109/554 (19%)

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           + +E  + G ++A   E  +      + G + +G V+AV++    V   G  +   PL  
Sbjct: 245 KDVEKDSNGNIQAQLQEEYLNNFEAPEAGTIKEGYVVAVNNGTVFVDVGGKSEGHIPLDE 304

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLIT 589
             E    +P    KV  ++   +   +S    ++  K L   +L +   + +A  D+   
Sbjct: 305 FDE----EP----KVNDKVTVLIEKTESSNGHLSVSK-LKADRLILQKEFKQAYADKTPI 355

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM------YHVGQV-VKCRIMS 642
            G I K  + G  V+   G+  F P S+  +    +P ++      +++ ++    R   
Sbjct: 356 DGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLVGVKSKFYIEKLSFNSRSGE 415

Query: 643 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           +I  +RR  +    +  R +     K+G  V G V   T     + +   G   G +   
Sbjct: 416 NIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTVKSFTSFGAFIDL---GGFDGLL--- 469

Query: 703 HLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           H+ D    H T  K  +K G E + +++ LD E+  + LS K+   +   Q        H
Sbjct: 470 HINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKRINLSLKHFTQDPWLQF---EDKFH 526

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS-----KAVDGQRADLSKTYYVGQSVRSN 815
              +V G V    + G F+     + G A  S     K ++ +  D+ K    G  V   
Sbjct: 527 VEDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKIN-KPEDILKP---GDKVTCM 582

Query: 816 ILDVNSETGRITLSLKQSCCSSTD----------------------ASFMQ-----EHFL 848
           IL  + + GR++L LKQ   +  D                       +F+      + FL
Sbjct: 583 ILGYDIQAGRVSLGLKQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFL 642

Query: 849 LEEKIAMLQSSKHNGSEL---------------------------------KWVEGFIIG 875
             + I+ ++  KH GSEL                                 K+   + +G
Sbjct: 643 HADDISWIKRVKHPGSELEVGKEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVG 702

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAIL 925
           S++EG+V    DFGV V      D+ G I    L  +  E+          G  I+A ++
Sbjct: 703 SIVEGEVSSITDFGVFVKV--PGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVI 760

Query: 926 DVAKAERLVDLSLK 939
           ++    +    S+K
Sbjct: 761 EINPRNKKTAFSIK 774



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  +V+ ++P +K
Sbjct: 446  VKGTVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENK 504

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            R+ ++LK        Q E       HV DIV G + +   +G FI ++
Sbjct: 505  RINLSLKHFTQDPWLQFE----DKFHVEDIVTGTVTKTTDFGAFIELD 548


>gi|149177996|ref|ZP_01856593.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
 gi|148843189|gb|EDL57555.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
          Length = 641

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 149/357 (41%), Gaps = 41/357 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G +VKG V  +  FGA V   GG+  L  +  MS   I  P +  K+  E+   +
Sbjct: 218 SKIEEGQIVKGIVKNIADFGAFVDL-GGIDGLLHITDMSWGRINHPTEIVKIDDEIEVMI 276

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    ++I +  K+        + S Y   T     +G +  +  +G FV+  +G++G
Sbjct: 277 LSVDRDKEKIALGLKQKSPSPWELVESKYPVGTK---VNGHVVNVMSYGAFVKLEDGIEG 333

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               SE+        PS + ++G  V+  ++      + I+L   MK T+ +  D V   
Sbjct: 334 LVHISEMSWTKRINHPSELVNIGDEVEVVVLGVNKDKQEISLG--MKQTQSNPWDEVTKK 391

Query: 670 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 721
              G+ V G V  +T     + +      +G     H++D      + HA+    V+K G
Sbjct: 392 YPEGAQVKGTVRNLTNYGAFIEL-----EEGVDGLLHVSDMSWTRKISHAS---EVMKKG 443

Query: 722 YEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHI------HPNSVVHGYVCNIIE 774
            E + L++ +D E   + L  K        QL SD           P ++V G V  I  
Sbjct: 444 DEIECLVISVDEERKRIALGLK--------QLASDPWETDIPQKYQPGAIVQGTVTKITN 495

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G FV     L G    S+  D +  +      VG+ +   IL V+++  +I LS K
Sbjct: 496 FGVFVELEEELEGLLHISELADHKVENPEDIVKVGEKLDVKILRVDTDDRKIGLSRK 552



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 40/397 (10%)

Query: 188 HVGQLVSCIVLQLDDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
           ++G+ + C++L++D+ ++ I   +RK+    R  L    LS   ++EG ++   VK+I D
Sbjct: 178 YIGRTIECVILKIDEARRNIVVSRRKLIEEKREKLKQDLLS--KIEEGQIVKGIVKNIAD 235

Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
            G  +  G     G L   +++   G    P  +++     ID   +V+ LS D D    
Sbjct: 236 FGAFVDLG--GIDGLLHITDMS--WGRINHPTEIVK-----IDDEIEVMILSVDRDKEKI 286

Query: 306 CVTKDLKGISIDLLVP-----GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
            +    K  S   LV      G  V+  V +++  G  +       G V I  +  T   
Sbjct: 287 ALGLKQKSPSPWELVESKYPVGTKVNGHVVNVMSYGAFVKLEDGIEGLVHISEMSWTKRI 346

Query: 361 TNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVKVG----DIY 411
            +     N   +V   +L V+   + + L +     NP+    +  P   +V     ++ 
Sbjct: 347 NHPSELVNIGDEVEVVVLGVNKDKQEISLGMKQTQSNPWDEVTKKYPEGAQVKGTVRNLT 406

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471
           +    + ++ G+  LL +     +      IS  +E     + KK  E  C+ + +   R
Sbjct: 407 NYGAFIELEEGVDGLLHVSDMSWTR----KISHASE-----VMKKGDEIECLVISVDEER 457

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 531
               L    L +  +E  +      +PG +V+G V  + +FG  V+    ++ L  +  +
Sbjct: 458 KRIALGLKQLASDPWETDI--PQKYQPGAIVQGTVTKITNFGVFVELEEELEGLLHISEL 515

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHK 566
           ++ ++  P    KVG +L  ++L V +  ++I ++ K
Sbjct: 516 ADHKVENPEDIVKVGEKLDVKILRVDTDDRKIGLSRK 552



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 132/302 (43%), Gaps = 54/302 (17%)

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHI 1212
            E    +G +V G+V  V +  A + +   ++  + I + ++      PSEL       +I
Sbjct: 302  ESKYPVGTKVNGHVVNVMSYGAFVKLEDGIEGLVHISEMSWTKRINHPSEL------VNI 355

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKI 1270
            G  V   VL +NK+K+ + L ++  Q          SN  D +     EG  V G +  +
Sbjct: 356  GDEVEVVVLGVNKDKQEISLGMKQTQ----------SNPWDEVTKKYPEGAQVKGTVRNL 405

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1330
             +   G  +++   + G +H +++     +  +S   E          +G  ++C V+ +
Sbjct: 406  TNY--GAFIELEEGVDGLLHVSDM---SWTRKISHASEV-------MKKGDEIECLVISV 453

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
                +         R +L G+    S    TD+  P K+        P  IVQG V  +T
Sbjct: 454  DEERK---------RIAL-GLKQLASDPWETDI--PQKY-------QPGAIVQGTVTKIT 494

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
            + G F+ L  +L+  + +S L+D  VE+PE    +G+ +  ++L V+   +++ ++ K  
Sbjct: 495  NFGVFVELEEELEGLLHISELADHKVENPEDIVKVGEKLDVKILRVDTDDRKIGLSRKLE 554

Query: 1451 DS 1452
            +S
Sbjct: 555  ES 556


>gi|170744131|ref|YP_001772786.1| 30S ribosomal protein S1 [Methylobacterium sp. 4-46]
 gi|168198405|gb|ACA20352.1| ribosomal protein S1 [Methylobacterium sp. 4-46]
          Length = 569

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 113/505 (22%), Positives = 199/505 (39%), Gaps = 69/505 (13%)

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
           L+G A+     +A     F   ++  G VVKG+V+A++   A++      +   PL    
Sbjct: 5   LQGAASSREDFAALLEESFRQHEITEGSVVKGRVVAIEKDVAVIDIGAKTEGRVPLK--- 61

Query: 533 EFEIVKPGKK--FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLI 588
             E   PG+     VG E+   V  +++      ++  K   +     L    E  +R+ 
Sbjct: 62  --EFTGPGRDQPISVGDEVEVYVDRIENALGEAVISRDKARREESWVKLEKAFENNERVT 119

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSI 644
             G I    K G  V   +G   F PRS++ + P  + + +    Q  +     R   +I
Sbjct: 120 --GTIFNQVKGGYTVDL-DGAVAFLPRSQVDIRPVRDVTPLMGTPQPFQILKMDRRRGNI 176

Query: 645 PASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
             SRR  L       R      ++ G ++ GVV  +T     V +   G   G +    +
Sbjct: 177 VVSRRTVLEESRAEQRSELVANLEEGQVIDGVVKNITEYGAFVDL---GGIDGLLHVTDM 233

Query: 705 A----DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           A    +H      +   +K      +++ +++E+  + L  K  L +  + +   A+   
Sbjct: 234 AWRRVNHPSEVVNIGQTVKV-----KIIKINHETHRISLGIKQLLADPWEGI---AARYP 285

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDV 819
            N+ + G V NI + G FV     + G    S+ +   +     K     Q V   IL+V
Sbjct: 286 VNAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEV 345

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           +    RI+L LKQ+  +  +A F ++H                           +GS +E
Sbjct: 346 DPVKRRISLGLKQTLQNPWEA-FAEKH--------------------------PVGSEVE 378

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAE 931
           G+V    +FG+ +  E   DV G +    L     G  V    + G V++A +LDV   +
Sbjct: 379 GEVKNKTEFGLFIGLE--GDVDGMVHLSDLDWNRPGEQVIDEFKKGDVVRAQVLDVDVEK 436

Query: 932 RLVDLSLKTVFIDRFREANSNRQAQ 956
             + L +K +  D F +A   R+ Q
Sbjct: 437 ERISLGIKQLAGDPFADAGEIRKGQ 461


>gi|262038294|ref|ZP_06011683.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Leptotrichia
           goodfellowii F0264]
 gi|261747686|gb|EEY35136.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Leptotrichia
           goodfellowii F0264]
          Length = 517

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 171/380 (45%), Gaps = 43/380 (11%)

Query: 288 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
           ++TR  + LS   D + K     LK I+I     G  ++  V+ +L+ G++++ L   TG
Sbjct: 145 EKTRNGLTLSR-TDLIKKEEEGYLKSINI-----GDTLTGEVKKVLDFGIIVN-LGVTTG 197

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPP 402
            + I  L         KN Y +  K+ A+++ +D   ++V L++     NP+     +  
Sbjct: 198 FIHISELGWHHGADALKN-YKEGDKIEAKVIDIDNEKKSVKLSVKQLSENPW----NSVK 252

Query: 403 SHVKVGDIY--DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
              K+GDI   D S+V       GLL+++          + +SD+A   V  L  KYK+G
Sbjct: 253 EKYKIGDILEKDVSEVFE----FGLLIELEK---DIEGLLHVSDLAYRRVSNLNSKYKKG 305

Query: 461 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD--VKPGMVVKGKVIAVDSFGAIVQF 518
             ++ +I+GF   +   +  L A A    ++   +     G VVKGKV+ V  +G  ++ 
Sbjct: 306 DVIKFKIIGFNDEKNRLS--LSAKALFDDMWDKIEELYNVGDVVKGKVVNVQEYGIFLEI 363

Query: 519 PGGVKALCPLPHMSEFEIVKPGK-KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAIL 577
             GV+      H +EF   +    KFKVG E+ F+++ +         KK     K   +
Sbjct: 364 REGVEVFI---HKNEFSWDRNENIKFKVGDEVEFKIISLDK-----NEKKIGGSIKQLTV 415

Query: 578 SSYAEATDRLITHGW----ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
           S + EA ++          I +I+++G  V+  +   G  P+ EL  +   + S  + VG
Sbjct: 416 SPWKEAAEQYKIGNKVKVPIVEIQENGVLVKLTDRFNGMVPKKELTDEFLKDISEKFSVG 475

Query: 634 QVVKCRIMSSIPASRRINLS 653
             V+  I  +    + I LS
Sbjct: 476 DEVEAVITETNEKRKSIILS 495


>gi|408502171|ref|YP_006869615.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum str. Mexico A]
 gi|408475534|gb|AFU66299.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum str. Mexico A]
          Length = 880

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 25/220 (11%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV----KPGKKFKVGAELVFRVLG- 555
           VVKG+V  +  FGA ++   G++ L    H+SEF  V    KP    K+G E+   +LG 
Sbjct: 598 VVKGRVTKIADFGAFIELAEGIEGLA---HISEFSWVKKTSKPSDMVKIGDEVECMILGY 654

Query: 556 -VKSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
            +++ R+++  K+        I + Y   A  T R++      K+   G F+    G+ G
Sbjct: 655 DIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIV------KVTNAGAFIEMEEGIDG 708

Query: 612 FAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
           F    +L       P+     VG+ ++C ++   P +RRI L        P +V   +  
Sbjct: 709 FLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA-NAY 767

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            +GS V G V  VT   + V V   G  +G +  +HL ++
Sbjct: 768 GVGSTVEGEVSSVTDFGIFVRV--PGGVEGLVRKQHLVEN 805



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 144/349 (41%), Gaps = 39/349 (11%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSK 559
           V G V +  SFGA +   GG   L  +  MS   + +P +  K G  +  +V  L    K
Sbjct: 514 VSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 572

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           RI ++ K       L   + +    D  +  G +TKI   G F+    G++G A  SE  
Sbjct: 573 RINLSLKHFQPDPWLEFENKFG-VND--VVKGRVTKIADFGAFIELAEGIEGLAHISEFS 629

Query: 620 -LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSG 675
            +    +PS M  +G  V+C I+     + R++L        P    E            
Sbjct: 630 WVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRR 689

Query: 676 VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +V V    A +         ++V    + K T P +H              ++ G E + 
Sbjct: 690 IVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHE-------------LEVGKEIEC 736

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           +++  D ++  + L  K  L ++  Q+ ++A  +   S V G V ++ + G FVR  G +
Sbjct: 737 MVIECDPQARRIRLGVK-QLSDNPWQVFANAYGV--GSTVEGEVSSVTDFGIFVRVPGGV 793

Query: 786 TGFAPRSKAV---DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G   +   V   DG   +  + Y VG  V++ I+D+N +  ++  S++
Sbjct: 794 EGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVR 842



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G VK+ TS G FI L    D  + ++++S G+V  P +    G+ +  +V+ ++   K
Sbjct: 514  VSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 572

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ ++LK        + E    +   V D+V G++ ++  +G FI +
Sbjct: 573  RINLSLKHFQPDPWLEFE----NKFGVNDVVKGRVTKIADFGAFIEL 615


>gi|387761716|ref|YP_006068693.1| 30S ribosomal protein S1 [Streptococcus salivarius 57.I]
 gi|339292483|gb|AEJ53830.1| 30S ribosomal protein S1 [Streptococcus salivarius 57.I]
          Length = 430

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 169/385 (43%), Gaps = 40/385 (10%)

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GV 522
           RVRI G+  LE L     + + FE L+ + S+V  G VV  +VI+VD+  A V   G G+
Sbjct: 17  RVRI-GWLLLEDL----FRMNEFEELLNSVSEVNTGDVVTAEVISVDNDQANVVIEGTGI 71

Query: 523 KALCPLPHMSE------FEIVKPGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLA 575
           + +     ++        ++VK G+  +V   LV R V+G  +  +T    K  ++++ A
Sbjct: 72  EGVLTRRELTNDRDANVADLVKVGETLEV---LVLRQVVGKDTDTVTYLVSKKRLEARKA 128

Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
                    + +   G  T+  K G  V F  G++GF P S +  D     ++   VGQ 
Sbjct: 129 WDKLVGREEEVVTVKG--TRAVKGGLSVEF-EGLRGFIPASMI--DTRFVRNTEQFVGQE 183

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSEDDL------VKLGSLVSGVVDVVTPNAVVVYV 689
              +I    PA  R  LS        + +        +++GS+V+G V  +T     + +
Sbjct: 184 FDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSFGAFIDL 243

Query: 690 IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINS 748
              G   G +    L+   E     KSV+  G E + ++L +D E+  + LS K +    
Sbjct: 244 ---GGVDGLVHVTELSH--ERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTPG- 297

Query: 749 AQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
               P D     +    V+ G V  + + G FV  L  + G    S+    +  +     
Sbjct: 298 ----PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVL 353

Query: 807 YVGQSVRSNILDVNSETGRITLSLK 831
            VGQ V   +L+VN++  R++LS+K
Sbjct: 354 SVGQDVTVKVLEVNADAERVSLSIK 378



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 156/385 (40%), Gaps = 58/385 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           G++G   R EL  D     + +  VG+ ++  ++  +       +++++   R+      
Sbjct: 70  GIEGVLTRRELTNDRDANVADLVKVGETLEVLVLRQVVGKDTDTVTYLVSKKRLEARK-- 127

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKPG 721
               LV    +VVT        +  G S      +G IP    A  ++   V  +    G
Sbjct: 128 AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGLRGFIP----ASMIDTRFVRNTEQFVG 181

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFV 779
            EFD ++  +D   +  +LS +  +   A +   +  S +   S+V G V  +   G F+
Sbjct: 182 QEFDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSFGAFI 241

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             LG + G    ++    +         VG  V   +L ++ E GR++LSLK +     D
Sbjct: 242 D-LGGVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTPGPWD 300

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                    +E+K+A                    G VIEGKV    DFG  V  E    
Sbjct: 301 G--------VEQKLAA-------------------GDVIEGKVKRLTDFGAFV--EVLPG 331

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVF---IDRFRE 948
           + G +   Q++   VE+       G  +   +L+V A AER V LS+K +     +   E
Sbjct: 332 IDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAER-VSLSIKALEERPANAEGE 390

Query: 949 ANSNRQAQKKKRKREASKDLGVHQT 973
            N  RQ++ ++ KR+  +D  + +T
Sbjct: 391 NNEKRQSRPRRPKRQEKRDYELPET 415



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 34/203 (16%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G IV G+++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 224  GSIVTGKVARLTSF--GAFIDLG-GVDGLVHVTELSH-----------ERNVSPKSVVSV 269

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  V+ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 270  GDEVEVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 309

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 310  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNAD 369

Query: 1440 SKRVEVTLKTSDSRTASQSEINN 1462
            ++RV +++K  + R A+    NN
Sbjct: 370  AERVSLSIKALEERPANAEGENN 392



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV G V  +TS G FI L   +D  V ++ LS     SP+    +G  V  +VL+++  +
Sbjct: 226  IVTGKVARLTSFGAFIDLG-GVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAIDEEA 284

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 285  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 328


>gi|322517175|ref|ZP_08070058.1| 30S ribosomal protein S1 [Streptococcus vestibularis ATCC 49124]
 gi|322124234|gb|EFX95750.1| 30S ribosomal protein S1 [Streptococcus vestibularis ATCC 49124]
          Length = 430

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 169/385 (43%), Gaps = 40/385 (10%)

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GV 522
           RVRI G+  LE L     + + FE L+ + S+V  G VV  +VI+VD+  A V   G G+
Sbjct: 17  RVRI-GWLLLEDL----FRMNEFEELLNSVSEVNTGDVVTAEVISVDNDQANVVIEGTGI 71

Query: 523 KALCPLPHMSE------FEIVKPGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLA 575
           + +     ++        ++VK G+  +V   LV R V+G  +  +T    K  ++++ A
Sbjct: 72  EGVLTRRELTNDRDANVADLVKVGETLEV---LVLRQVVGKDTDTVTYLVSKKRLEARKA 128

Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
                    + +   G  T+  K G  V F  G++GF P S +  D     ++   VGQ 
Sbjct: 129 WDKLVGREEEVVTVKG--TRAVKGGLSVEF-EGLRGFIPASMI--DTRFVRNTEQFVGQE 183

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSEDDL------VKLGSLVSGVVDVVTPNAVVVYV 689
              +I    PA  R  LS        + +        +++GS+V+G V  +T     + +
Sbjct: 184 FDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSFGAFIDL 243

Query: 690 IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINS 748
              G   G +    L+   E     KSV+  G E + ++L +D E+  + LS K +    
Sbjct: 244 ---GGVDGLVHVTELSH--ERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTPG- 297

Query: 749 AQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
               P D     +    V+ G V  + + G FV  L  + G    S+    +  +     
Sbjct: 298 ----PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVL 353

Query: 807 YVGQSVRSNILDVNSETGRITLSLK 831
            VGQ V   +L+VN++  R++LS+K
Sbjct: 354 SVGQDVTVKVLEVNADAERVSLSIK 378



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 156/385 (40%), Gaps = 58/385 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           G++G   R EL  D     + +  VG+ ++  ++  +       +++++   R+      
Sbjct: 70  GIEGVLTRRELTNDRDANVADLVKVGETLEVLVLRQVVGKDTDTVTYLVSKKRLEARK-- 127

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKPG 721
               LV    +VVT        +  G S      +G IP    A  ++   V  +    G
Sbjct: 128 AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGLRGFIP----ASMIDTRFVRNTEQFVG 181

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFV 779
            EFD ++  +D   +  +LS +  +   A +   +  S +   S+V G V  +   G F+
Sbjct: 182 QEFDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSFGAFI 241

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             LG + G    ++    +         VG  V   +L ++ E GR++LSLK +     D
Sbjct: 242 D-LGGVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTPGPWD 300

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                    +E+K+A                    G VIEGKV    DFG  V  E    
Sbjct: 301 G--------VEQKLAA-------------------GDVIEGKVKRLTDFGAFV--EVLPG 331

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVF---IDRFRE 948
           + G +   Q++   VE+       G  +   +L+V A AER V LS+K +     +   E
Sbjct: 332 IDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAER-VSLSIKALEERPANAEGE 390

Query: 949 ANSNRQAQKKKRKREASKDLGVHQT 973
            N  RQ++ ++ KR+  +D  + +T
Sbjct: 391 NNEKRQSRPRRPKRQEKRDYELPET 415



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 34/203 (16%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G IV G+++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 224  GSIVTGKVARLTSF--GAFIDLG-GVDGLVHVTELSH-----------ERNVSPKSVVSV 269

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  V+ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 270  GDEVEVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 309

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 310  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNAD 369

Query: 1440 SKRVEVTLKTSDSRTASQSEINN 1462
            ++RV +++K  + R A+    NN
Sbjct: 370  AERVSLSIKALEERPANAEGENN 392



 Score = 44.3 bits (103), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV G V  +TS G FI L   +D  V ++ LS     SP+    +G  V  +VL+++  +
Sbjct: 226  IVTGKVARLTSFGAFIDLG-GVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAIDEEA 284

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 285  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 328


>gi|386729174|ref|YP_006195557.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           71193]
 gi|418978128|ref|ZP_13525929.1| SSU ribosomal protein S1P [Staphylococcus aureus subsp. aureus
           DR10]
 gi|379993744|gb|EIA15189.1| SSU ribosomal protein S1P [Staphylococcus aureus subsp. aureus
           DR10]
 gi|384230467|gb|AFH69714.1| SSU ribosomal protein S1P [Staphylococcus aureus subsp. aureus
           71193]
          Length = 398

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 18  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 77

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 78  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 135

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 136 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 191

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 192 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 246

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +         N V+ G V  +   G FV
Sbjct: 247 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFRENDVIEGVVVRLANFGAFV 303

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 304 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 358



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 169/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 20  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 78

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 79  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 138

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 139 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 176

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 177 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 224

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 225 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 281

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 282 QFRENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 336

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 337 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 380



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 20  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 76

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 77  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 124

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 125 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 180

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 181 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 217

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 218 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 269



 Score = 40.4 bits (93), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 188  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIG-GVDGLVHVSELSHEHVQTPEEVV 244

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 245  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 275

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 276  FENIKG--QFRENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 333

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 334  QQVNVKILGIDEENERVSLSIKAT 357


>gi|323498283|ref|ZP_08103285.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
 gi|323316711|gb|EGA69720.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
          Length = 556

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 151/372 (40%), Gaps = 43/372 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL 
Sbjct: 189 LQEGAEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIQVKVLK 247

Query: 556 VKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +R  V+   K+      +AI   Y E        G +T +  +GCFV    GV+G  
Sbjct: 248 FDRERTRVSLGLKQLGEDPWVAIAKRYPEGHK---LTGRVTNLTDYGCFVEIEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKL 669
             SE+   +    PS + +VG  V+  ++      RRI+L        P +   +   K 
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAK- 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  V+G +  +T   + +     G   G     HL+D   +    ++V   K G E    
Sbjct: 364 GDKVTGKIKSITDFGIFI-----GLEGGIDGLVHLSDISWNVPGEEAVREYKKGDEISAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
           +L +D E   + L  K        Q+ +D   +++  N   ++V+G V  +   G  +  
Sbjct: 419 VLAVDAERERISLGVK--------QMENDPFNAYVAENKKGALVNGTVTAVDAKGATIEL 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---------- 831
           +  + G+   S+    +  D S    VG SV +    V+ +   I LS+K          
Sbjct: 471 VEGVEGYLRASEVSRDRIEDASLILSVGDSVEAKFTGVDRKNRVINLSIKAKDEAEEQEA 530

Query: 832 -QSCCSSTDASF 842
             S   + DASF
Sbjct: 531 MASLNKADDASF 542



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 134/352 (38%), Gaps = 45/352 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LET+QEG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +Q 
Sbjct: 186 LETLQEGAEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEIQV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGHKLTGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N   +V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351

Query: 392 NPY--LLHNRAPPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      +A    V  K+  I D    + ++ G+  L+ +     + P         E
Sbjct: 352 NPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPG--------E 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK  E S V + +   R    L    ++   F   V   ++ K G +V G V 
Sbjct: 404 EAVREY-KKGDEISAVVLAVDAERERISLGVKQMENDPFNAYV---AENKKGALVNGTVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           AVD+ GA ++   GV+       +S   I        VG  +  +  GV  K
Sbjct: 460 AVDAKGATIELVEGVEGYLRASEVSRDRIEDASLILSVGDSVEAKFTGVDRK 511



 Score = 45.1 bits (105), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 166/387 (42%), Gaps = 58/387 (14%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           A  FE      ++ + G +VKG V+A+++    V    G+K+   +P   +F+      +
Sbjct: 6   AQLFEEF-LNETEFQQGSIVKGTVVAIEN--GFVLVDAGLKSESAIP-AEQFKNAAGELE 61

Query: 543 FKVGAELVFRVLGVK--------SKRITVTHKKTLVKSKLAILSSYAEATDRL-ITHGWI 593
            +VGA++   +  V+        S+     H+  +V  K     +Y EA   + I +G +
Sbjct: 62  VEVGAQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEK-----AYEEAETVVGIINGKV 116

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRR 649
                 G F    NG++ F P S + + P  + + + +     +V+K  +  +++  SRR
Sbjct: 117 -----KGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR 171

Query: 650 INLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA- 705
              + +     V  D+L++    G+ V G+V  +T     V +   G   G +    +A 
Sbjct: 172 ---AVIESENSVERDELLETLQEGAEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAW 225

Query: 706 DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHI 759
             ++H +    ++  G E   ++L  D E + + L  K        QL  D     A   
Sbjct: 226 KRVKHPS---EIVNVGDEIQVKVLKFDRERTRVSLGLK--------QLGEDPWVAIAKRY 274

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNIL 817
                + G V N+ + GCFV     + G    S+ +D    ++  SK   VG  V   +L
Sbjct: 275 PEGHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQ 844
           +++ E  RI+L LKQ C ++   SF +
Sbjct: 334 EIDEERRRISLGLKQ-CKANPWQSFAE 359


>gi|450120420|ref|ZP_21865734.1| 30S ribosomal protein S1 [Streptococcus mutans ST6]
 gi|449230329|gb|EMC29595.1| 30S ribosomal protein S1 [Streptococcus mutans ST6]
          Length = 399

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +V+ VD   A +   G GV+A+  L  ++        + VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         D +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGDVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA------SRRIN 651
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    P+      SRR  
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQQFEAKIKEIDPSENRFILSRRDV 175

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           +       R      + +G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEAAAAKAREEVFSRLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHITELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLVAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SRLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHITELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+                   + G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKL-------------------VAGD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +  +R  +  SN   RQ++ +++KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALE-ERPAQDESNGEKRQSRPRRQKRQDKRDYELPET 384



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KL        A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLV-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D+
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQDE 358



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 35/202 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHITELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L   
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLVAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTASQSEIN 1461
             +RV +++K  + R A Q E N
Sbjct: 340  DERVSLSIKALEERPA-QDESN 360



 Score = 44.7 bits (104), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLVAGDVIEGKVKRLTDFGAFVEV 298


>gi|148653385|ref|YP_001280478.1| 30S ribosomal protein S1 [Psychrobacter sp. PRwf-1]
 gi|148572469|gb|ABQ94528.1| SSU ribosomal protein S1P [Psychrobacter sp. PRwf-1]
          Length = 559

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 147/350 (42%), Gaps = 32/350 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G+ V+G V  +  +GA V   GG+  L  +  M+   I  P +  +VG +L  +VL 
Sbjct: 190 LEEGIEVEGIVKNLTDYGAFVDL-GGIDGLLHITDMAWRRIKHPSEVVEVGQDLKVKVLK 248

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+        +  +Y   +   I    +T +  +GCF    +G++G  
Sbjct: 249 FDRERNRVSLGLKQLGTDPWDNVGGTYPVGS---IVKARVTNLTDYGCFAEISDGIEGLV 305

Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK-PTRVSE-DDLVKLG 670
             SE+   +    PS +  +G  V   I+      RRI+L      P    E D     G
Sbjct: 306 HVSEMDHTNKNIHPSKVVQIGDEVDVMILDIDEERRRISLGIKQTLPNPWEEFDKKYDRG 365

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD----Q 726
             ++G +  +T   + +     G   G     HL+D +      +  I+   + D     
Sbjct: 366 DKLTGTIKSITDFGIFI-----GLDGGIDGLVHLSD-ISWNEAGEEAIRNYNKGDTVEAM 419

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-----PNSVVHGYVCNIIETGCFVRF 781
           +L +D E++ + L  K        QL SD  + +       S+V G V ++   G  +  
Sbjct: 420 VLSVDAEANRISLGIK--------QLSSDPFNEYLVGNDRGSIVTGTVKDVDAKGATITL 471

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + G+   S+    +  D +K   VG SV + I+ V+ ++  I+LS+K
Sbjct: 472 ADEVEGYLRASEIQRDKVEDATKHLNVGDSVEAKIISVDRKSRGISLSIK 521



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFRVLGV--KSKR 560
           G + ++  FG  +   GG+  L  L  +S  E  +   + +  G  +   VL V  ++ R
Sbjct: 370 GTIKSITDFGIFIGLDGGIDGLVHLSDISWNEAGEEAIRNYNKGDTVEAMVLSVDAEANR 429

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           I++  K+          + Y    DR  I  G +  ++  G  +   + V+G+   SE+ 
Sbjct: 430 ISLGIKQLSSDP----FNEYLVGNDRGSIVTGTVKDVDAKGATITLADEVEGYLRASEIQ 485

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 671
            D   + +   +VG  V+ +I+S    SR I+LS   K        + +LGS
Sbjct: 486 RDKVEDATKHLNVGDSVEAKIISVDRKSRGISLSIKAKDEAEERQAIKELGS 537


>gi|116618391|ref|YP_818762.1| 30S ribosomal protein S1P [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|381336765|ref|YP_005174540.1| 30S ribosomal protein S1 [Leuconostoc mesenteroides subsp.
           mesenteroides J18]
 gi|116097238|gb|ABJ62389.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|356644731|gb|AET30574.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp.
           mesenteroides J18]
          Length = 396

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 27/265 (10%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
           GD  D +KV+   RG GL++D+       P S  A   +SD+ + + + ++ +  E    
Sbjct: 110 GDTVD-AKVINAVRG-GLVVDVNGVRGFVPASMVADRFVSDLNQFKNKDIKAQVIEIDAA 167

Query: 464 RVR-ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
           + R IL  + +         A AFE L         G VV+GKV  +  FGA V   GGV
Sbjct: 168 KARLILSRKAVAAQERAAQLAEAFEKLSV-------GEVVEGKVARLTDFGAFVDL-GGV 219

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVK--SKLAILS 578
             L  +  +S   +  P      G  +  ++L + ++  RI+++ K T      K+A   
Sbjct: 220 DGLVHVSEISHDRVKNPADVLTKGETVNVKILALDAEKGRISLSIKATQPGPWDKVA--- 276

Query: 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
              EA    +  G + +++  G FV  + G++G    S++       PS +   G  V+ 
Sbjct: 277 --EEAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQV 334

Query: 639 RIMSSIPASRRINLSFMM---KPTR 660
           +++   PA  RI+LS      KP R
Sbjct: 335 QVLDVKPAEERISLSMKALEEKPER 359



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 144/372 (38%), Gaps = 48/372 (12%)

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
             +  + G +G  P  E   D     +    VG  V+  ++S++ + +   +S+++   R
Sbjct: 37  AVIGLHTGEEGVVPAREYSDDRNINLADELKVGDSVEAVVISNVTSDKE-GVSYLLSKKR 95

Query: 661 VSEDDLVKLGSLVSG-VVDVVTPNAVVV-YVIAKGYSKGTIPTEHLADHL--EHATVMKS 716
           +      +  S   G  VD    NAV    V+     +G +P   +AD    +       
Sbjct: 96  LEARKAWENLSFGEGDTVDAKVINAVRGGLVVDVNGVRGFVPASMVADRFVSDLNQFKNK 155

Query: 717 VIKPGYEFDQLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
            IK      Q++ +D   + L+LS K  +    A QL      +    VV G V  + + 
Sbjct: 156 DIKA-----QVIEIDAAKARLILSRKAVAAQERAAQLAEAFEKLSVGEVVEGKVARLTDF 210

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G FV  LG + G    S+    +  + +     G++V   IL +++E GRI+LS+K +  
Sbjct: 211 GAFVD-LGGVDGLVHVSEISHDRVKNPADVLTKGETVNVKILALDAEKGRISLSIKATQP 269

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
              D                           K  E    G+V+EG V    DFG  V  E
Sbjct: 270 GPWD---------------------------KVAEEAPAGTVLEGTVKRVKDFGAFV--E 300

Query: 896 EHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
               + G +   Q++   +E       SG  +Q  +LDV  AE  + LS+K +     RE
Sbjct: 301 IFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQVQVLDVKPAEERISLSMKALEEKPERE 360

Query: 949 ANSNRQAQKKKR 960
              N +     R
Sbjct: 361 DRGNSKDSSASR 372



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 160/375 (42%), Gaps = 71/375 (18%)

Query: 1085 IGFH----GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSI 1140
            IG H    G +   E +DD+ N+  NL    K+G +V A +I  SN    K+   + LS 
Sbjct: 39   IGLHTGEEGVVPAREYSDDR-NI--NLADELKVGDSVEAVVI--SNVTSDKEGVSYLLSK 93

Query: 1141 KPSMLTVSEIGSKLLFEECDVSIGQRVT----GYVYKVDNEWALLTISRHLKAQLFILDS 1196
            K   L   +    L F E D    + +     G V  V+     +  S  + A  F+   
Sbjct: 94   K--RLEARKAWENLSFGEGDTVDAKVINAVRGGLVVDVNGVRGFVPAS--MVADRFV--- 146

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
                S+L +F+      K +   V+ I+  K   RL+L        ++   ++    + F
Sbjct: 147  ----SDLNQFKN-----KDIKAQVIEIDAAKA--RLILSRKAVAAQERAAQLA----EAF 191

Query: 1257 --IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1314
              +  G++V G+++++     G  V +G  + G VH +E+ +  V +P         D L
Sbjct: 192  EKLSVGEVVEGKVARLTDF--GAFVDLG-GVDGLVHVSEISHDRVKNPA--------DVL 240

Query: 1315 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1374
            +   +G+ V  K+L +    +G   + LS++++                  PG   +  E
Sbjct: 241  T---KGETVNVKILALDAE-KG--RISLSIKAT-----------------QPGPWDKVAE 277

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +     +++G VK V   G F+ +   ++  V +S +S   +E+P +    G  V  +VL
Sbjct: 278  EAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQVQVL 337

Query: 1435 SVEPLSKRVEVTLKT 1449
             V+P  +R+ +++K 
Sbjct: 338  DVKPAEERISLSMKA 352



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 148/355 (41%), Gaps = 67/355 (18%)

Query: 1147 VSEIGSKLL--FEECD-VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
            +SE  ++LL   E  D + +G  VTG V  VDN+   + I  H   +  +    Y     
Sbjct: 1    MSETNNELLAALESADQIKVGDVVTGEVLAVDNDNQAV-IGLHTGEEGVVPAREYSDDRN 59

Query: 1204 QEFQRRFHIGKAVTGHVLS-INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1262
                    +G +V   V+S +  +K+ +  +L       S K ++           EGD 
Sbjct: 60   INLADELKVGDSVEAVVISNVTSDKEGVSYLL-------SKKRLEARKAWENLSFGEGDT 112

Query: 1263 VGGRISKILSGV-GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1321
            V    +K+++ V GGLVV +   + G V  + + +  VSD        QF       + +
Sbjct: 113  VD---AKVINAVRGGLVVDVN-GVRGFVPASMVADRFVSDL------NQF-------KNK 155

Query: 1322 FVKCKVLEI----SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
             +K +V+EI    +R +     V    R++                    +  E  E LS
Sbjct: 156  DIKAQVIEIDAAKARLILSRKAVAAQERAA--------------------QLAEAFEKLS 195

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
               +V+G V  +T  G F+ L   +D  V +S +S   V++P      G+ V  ++L+++
Sbjct: 196  VGEVVEGKVARLTDFGAFVDLG-GVDGLVHVSEISHDRVKNPADVLTKGETVNVKILALD 254

Query: 1438 PLSKRVEVTLKTSD----SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                R+ +++K +      + A ++          G ++ G +KRV+ +G F+ I
Sbjct: 255  AEKGRISLSIKATQPGPWDKVAEEA--------PAGTVLEGTVKRVKDFGAFVEI 301


>gi|421490897|ref|ZP_15938264.1| S1 RNA binding domain protein [Streptococcus anginosus SK1138]
 gi|400371894|gb|EJP24843.1| S1 RNA binding domain protein [Streptococcus anginosus SK1138]
          Length = 399

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 160/368 (43%), Gaps = 45/368 (12%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        ++VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDANQANVAIAGTGVEGVLTLRELTNDRDADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + ++T   I  + 
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKA-WDKLVGREEEVVTVKGIRAV- 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  G++GF P S L  D     ++   VGQ  + +I    P   R    F++ 
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFEAKIKEVDPKENR----FILS 171

Query: 658 PTRVSEDDLVKLGSLVSG---VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
              V E+      + V G   V D+VT        +A+  S G        D L H T +
Sbjct: 172 RREVVEEKAAAARAEVFGKLAVGDIVTGK------VARITSFGAFIDLGGVDGLVHLTEL 225

Query: 715 --------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNS 763
                   KSV+  G E + ++L L+ E   + LS K +        P D     +    
Sbjct: 226 SHERNVSPKSVVSVGDEIEVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGD 280

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           V+ G V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN++ 
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADA 340

Query: 824 GRITLSLK 831
            R++LS+K
Sbjct: 341 ERVSLSIK 348



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++     + R++LS      R +++D
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERPAQED 358



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 34/200 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GDEIEVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQSE 1459
            ++RV +++K  + R A + +
Sbjct: 340  AERVSLSIKALEERPAQEDD 359



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 41/220 (18%)

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           +V G V  I   G F+  LG + G    ++    +         VG  +   +LD+N E 
Sbjct: 196 IVTGKVARITSFGAFID-LGGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNEEE 254

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
           GR++LSLK +     D         +E+K+A                    G VIEG V 
Sbjct: 255 GRVSLSLKATTPGPWDG--------VEQKLAA-------------------GDVIEGTVK 287

Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVD 935
              DFG  V  E    + G +   Q++   VE+       G  +   +LDV A AER V 
Sbjct: 288 RLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAER-VS 344

Query: 936 LSLKTVFIDRFREANS--NRQAQKKKRKREASKDLGVHQT 973
           LS+K +     +E +    RQ++ +++KR+  +D  + +T
Sbjct: 345 LSIKALEERPAQEDDQKEKRQSRPRRQKRQEKRDFELPET 384



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V L+ LS     SP+    +G  +  +VL 
Sbjct: 191  LAVGDIVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLD 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 250  LNEEEGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|392428718|ref|YP_006469729.1| 30S ribosomal protein S1 [Streptococcus intermedius JTH08]
 gi|419776707|ref|ZP_14302629.1| S1 RNA binding domain protein [Streptococcus intermedius SK54]
 gi|423070410|ref|ZP_17059186.1| hypothetical protein HMPREF9177_00503 [Streptococcus intermedius
           F0413]
 gi|424787708|ref|ZP_18214472.1| S1 RNA binding domain protein [Streptococcus intermedius BA1]
 gi|355365771|gb|EHG13491.1| hypothetical protein HMPREF9177_00503 [Streptococcus intermedius
           F0413]
 gi|383846118|gb|EID83518.1| S1 RNA binding domain protein [Streptococcus intermedius SK54]
 gi|391757864|dbj|BAM23481.1| 30S ribosomal protein S1 [Streptococcus intermedius JTH08]
 gi|422113462|gb|EKU17200.1| S1 RNA binding domain protein [Streptococcus intermedius BA1]
          Length = 399

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 158/363 (43%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        ++VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDASQANVAIAGTGVEGVLTLRELTNDRDADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---- 653
           K G  V F  G++GF P S L  D     ++   VGQ  + +I    P   R  LS    
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFEAKIKEVDPKENRFILSRREV 175

Query: 654 FMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
              K      +   KL  G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEEKAAAARAEVFSKLAVGDIVTGKVARITSFGAFIDL---GGVDGLVHLTELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E + ++L L+ E   + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVSVGDEIEVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGT 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN++  R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 34/200 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GDEIEVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQSE 1459
            ++RV +++K  + R   + E
Sbjct: 340  AERVSLSIKALEERPVQEDE 359



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++     + R++LS      R  ++D
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERPVQED 358



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV G V  +TS G FI L   +D  V L+ LS     SP+    +G  +  +VL +    
Sbjct: 196  IVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNEEE 254

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 255  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|336451289|ref|ZP_08621727.1| ribosomal protein S1 [Idiomarina sp. A28L]
 gi|336281660|gb|EGN74932.1| ribosomal protein S1 [Idiomarina sp. A28L]
          Length = 564

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 148/345 (42%), Gaps = 20/345 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 194 NLQEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINCKVL 252

Query: 555 GVKSKRITVTHK-KTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
                R  V+   K L +   + +S+ Y E +      G +T +  +GCFV    GV+G 
Sbjct: 253 KFDRDRTRVSLGLKQLGEDPWSDISARYPENS---TLSGRVTNLTDYGCFVELQEGVEGL 309

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKL 669
              SE+   +    PS + ++  VV+  ++      RRI+L     KP    E     + 
Sbjct: 310 VHVSEMDWTNKNVHPSKIVNLDDVVEVMVLEIDEERRRISLGIKQCKPNPWEEFAKGFQK 369

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  VSG +  +T     +++   G   G +   HL+D   +AT  ++V   K G E +  
Sbjct: 370 GDKVSGKIKSITDFG--IFIGLDGNIDGLV---HLSDISWNATGEEAVRDFKKGDEVEAV 424

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K     S   + +  +     ++V G +  +   G  V+    + 
Sbjct: 425 VLQVDAERERISLGIKQI---SEDPVNNFLAANKKGAIVKGSITEVDAKGATVKLADGVE 481

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+   S     +  D S    VG  + +  + ++ +   I+LS+K
Sbjct: 482 GYVRASDIARERIEDASTVLSVGDEIEARYVGIDRKNRVISLSIK 526



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 108/476 (22%), Positives = 195/476 (40%), Gaps = 79/476 (16%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAE 548
           + +PG +VKG V+A+     +V    G+K+   +P         E EI   G   +V  +
Sbjct: 23  ETRPGSIVKGTVVAIAK--GLVLVDAGLKSESAIPAEQFMNADGELEIA-VGDTVEVALD 79

Query: 549 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA-EATDRLITHGWITKIEKHGCFVRFYN 607
            V    G   + I    K    ++ L + S++  E T   I  G +      G F    N
Sbjct: 80  AVEDGFG---ETILSREKAKRFEAWLQLESAHENEETVIGIISGKV-----KGGFTVDLN 131

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSE 663
           GV+ F P S + + P  + + + +     +V+K  +  +++  SRR   + + K      
Sbjct: 132 GVRAFLPGSLVDVRPIRDTAHLENRDLEFKVIKLDQKRNNVVVSRR---AVIEKENSAER 188

Query: 664 DDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
           D+L+   + G  V G+V  +T     V +   G   G +    +A   ++H +    ++ 
Sbjct: 189 DELLENLQEGQEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVN 242

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGC 777
            G E + ++L  D + + + L  K       +   SD S  +P NS + G V N+ + GC
Sbjct: 243 VGDEINCKVLKFDRDRTRVSLGLK----QLGEDPWSDISARYPENSTLSGRVTNLTDYGC 298

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           FV     + G    S+ +D    ++  SK   +   V   +L+++ E  RI+L +KQ  C
Sbjct: 299 FVELQEGVEGLVHVSE-MDWTNKNVHPSKIVNLDDVVEVMVLEIDEERRRISLGIKQ--C 355

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                                   K N  E ++ +GF  G  + GK+    DFG+ +  +
Sbjct: 356 ------------------------KPNPWE-EFAKGFQKGDKVSGKIKSITDFGIFIGLD 390

Query: 896 EH-------SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
            +       SD+    T  + A    + G  ++A +L V      + L +K +  D
Sbjct: 391 GNIDGLVHLSDISWNATGEE-AVRDFKKGDEVEAVVLQVDAERERISLGIKQISED 445



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 154/375 (41%), Gaps = 69/375 (18%)

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN--WK------NDYN 368
           D L+  +     V+ I++N      LT +   VD+  +      T+  WK         N
Sbjct: 189 DELLENLQEGQEVKGIVKN------LTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVN 242

Query: 369 QHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVRV 419
              ++N ++L  D     V L L     +P+  +  R P +     +V ++ D    V +
Sbjct: 243 VGDEINCKVLKFDRDRTRVSLGLKQLGEDPWSDISARYPENSTLSGRVTNLTDYGCFVEL 302

Query: 420 DRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRH- 472
             G+ GL+    +D  +  V     V + DV E  V +++++       R RI LG +  
Sbjct: 303 QEGVEGLVHVSEMDWTNKNVHPSKIVNLDDVVEVMVLEIDEE-------RRRISLGIKQC 355

Query: 473 ----LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
                E  A G  K                G  V GK+ ++  FG  +   G +  L   
Sbjct: 356 KPNPWEEFAKGFQK----------------GDKVSGKIKSITDFGIFIGLDGNIDGLV-- 397

Query: 529 PHMSEFEIVKPGKK----FKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAE 582
            H+S+      G++    FK G E+   VL V ++R  I++  K+    S+  + +  A 
Sbjct: 398 -HLSDISWNATGEEAVRDFKKGDEVEAVVLQVDAERERISLGIKQI---SEDPVNNFLAA 453

Query: 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
                I  G IT+++  G  V+  +GV+G+   S++  +   + S++  VG  ++ R + 
Sbjct: 454 NKKGAIVKGSITEVDAKGATVKLADGVEGYVRASDIARERIEDASTVLSVGDEIEARYVG 513

Query: 643 SIPASRRINLSFMMK 657
               +R I+LS   K
Sbjct: 514 IDRKNRVISLSIKAK 528



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 86/430 (20%), Positives = 168/430 (39%), Gaps = 73/430 (16%)

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSV 764
            HLE+  +   VIK          LD + +N+++S + ++I        D    ++     
Sbjct: 152  HLENRDLEFKVIK----------LDQKRNNVVVS-RRAVIEKENSAERDELLENLQEGQE 200

Query: 765  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
            V G V N+ + G FV  LG + G    +     +    S+   VG  +   +L  + +  
Sbjct: 201  VKGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEINCKVLKFDRDRT 259

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            R++L LKQ               L E+  + + +             +   S + G+V  
Sbjct: 260  RVSLGLKQ---------------LGEDPWSDISAR------------YPENSTLSGRVTN 292

Query: 885  SNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938
              D+G  V  +E      H     +   +      V    V++  +L++ +  R + L +
Sbjct: 293  LTDYGCFVELQEGVEGLVHVSEMDWTNKNVHPSKIVNLDDVVEVMVLEIDEERRRISLGI 352

Query: 939  KTVFIDRFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            K    + + E A   ++  K   K ++  D G+   ++  ++      + LS   +N + 
Sbjct: 353  KQCKPNPWEEFAKGFQKGDKVSGKIKSITDFGIFIGLDGNID----GLVHLSDISWN-AT 407

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
            G  +V D          F  G  V A V+ + +     R+ L +K ISE   ++   A K
Sbjct: 408  GEEAVRD----------FKKGDEVEAVVLQVDAERE--RISLGIKQISEDPVNNFLAANK 455

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
            K     G++V+  ITE+      +K   G  G +  +++  ++   +E+  +   +G  +
Sbjct: 456  K-----GAIVKGSITEVDAKGATVKLADGVEGYVRASDIARER---IEDASTVLSVGDEI 507

Query: 1118 TARIIAKSNK 1127
             AR +    K
Sbjct: 508  EARYVGIDRK 517


>gi|322372522|ref|ZP_08047058.1| ribosomal protein S1 [Streptococcus sp. C150]
 gi|321277564|gb|EFX54633.1| ribosomal protein S1 [Streptococcus sp. C150]
          Length = 417

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 168/385 (43%), Gaps = 40/385 (10%)

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GV 522
           RVRI G   LE L     + + FE L+ + S+V  G VV  +VI+VD+  A V   G G+
Sbjct: 4   RVRI-GCLLLEDL----FRMNEFEELLNSVSEVNTGDVVTAEVISVDNDQANVVIEGTGI 58

Query: 523 KALCPLPHMSE------FEIVKPGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLA 575
           + +     ++        ++VK G+  +V   LV R V+G  +  +T    K  ++++ A
Sbjct: 59  EGVLTRRELTNDRDANVADLVKVGETLEV---LVLRQVVGKDTDTVTYLVSKKRLEARKA 115

Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
                    + +   G  T+  K G  V F  G++GF P S +  D     ++   VGQ 
Sbjct: 116 WDKLVGREEEVVTVKG--TRAVKGGLSVEF-EGLRGFIPASMI--DTRFVRNTEQFVGQE 170

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSEDDL------VKLGSLVSGVVDVVTPNAVVVYV 689
              +I    PA  R  LS        + +        +++GS+V+G V  +T     + +
Sbjct: 171 FDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSFGAFIDL 230

Query: 690 IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINS 748
              G   G +    L+   E     KSV+  G E D ++L +D E+  + LS K +    
Sbjct: 231 ---GGVDGLVHVTELSH--ERNVSPKSVVSVGDEVDVKVLAIDEEAGRVSLSLKATTPG- 284

Query: 749 AQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
               P D     +    V+ G V  + + G FV  L  + G    S+    +  +     
Sbjct: 285 ----PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVL 340

Query: 807 YVGQSVRSNILDVNSETGRITLSLK 831
            VGQ V   +L+VN++  R++LS+K
Sbjct: 341 SVGQDVTVKVLEVNADAERVSLSIK 365



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 156/385 (40%), Gaps = 58/385 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           G++G   R EL  D     + +  VG+ ++  ++  +       +++++   R+      
Sbjct: 57  GIEGVLTRRELTNDRDANVADLVKVGETLEVLVLRQVVGKDTDTVTYLVSKKRLEARK-- 114

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKPG 721
               LV    +VVT        +  G S      +G IP    A  ++   V  +    G
Sbjct: 115 AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGLRGFIP----ASMIDTRFVRNTEQFVG 168

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFV 779
            EFD ++  +D   +  +LS +  +   A +   +  S +   S+V G V  +   G F+
Sbjct: 169 QEFDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSFGAFI 228

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             LG + G    ++    +         VG  V   +L ++ E GR++LSLK +     D
Sbjct: 229 D-LGGVDGLVHVTELSHERNVSPKSVVSVGDEVDVKVLAIDEEAGRVSLSLKATTPGPWD 287

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                    +E+K+A                    G VIEGKV    DFG  V  E    
Sbjct: 288 G--------VEQKLAA-------------------GDVIEGKVKRLTDFGAFV--EVLPG 318

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVF---IDRFRE 948
           + G +   Q++   VE+       G  +   +L+V A AER V LS+K +     +   E
Sbjct: 319 IDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAER-VSLSIKALEERPANAEGE 377

Query: 949 ANSNRQAQKKKRKREASKDLGVHQT 973
            N  RQ++ ++ KR+  +D  + +T
Sbjct: 378 NNEKRQSRPRRPKRQEKRDYELPET 402



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 34/203 (16%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G IV G+++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 211  GSIVTGKVARLTSF--GAFIDLG-GVDGLVHVTELSH-----------ERNVSPKSVVSV 256

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  V  KVL I         V LSL+++                 TPG      + L+  
Sbjct: 257  GDEVDVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 296

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 297  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNAD 356

Query: 1440 SKRVEVTLKTSDSRTASQSEINN 1462
            ++RV +++K  + R A+    NN
Sbjct: 357  AERVSLSIKALEERPANAEGENN 379



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV G V  +TS G FI L   +D  V ++ LS     SP+    +G  V  +VL+++  +
Sbjct: 213  IVTGKVARLTSFGAFIDLG-GVDGLVHVTELSHERNVSPKSVVSVGDEVDVKVLAIDEEA 271

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 272  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 315


>gi|116492841|ref|YP_804576.1| 30S ribosomal protein S1 [Pediococcus pentosaceus ATCC 25745]
 gi|421894040|ref|ZP_16324532.1| 30S ribosomal protein S1 homolog [Pediococcus pentosaceus IE-3]
 gi|116102991|gb|ABJ68134.1| SSU ribosomal protein S1P [Pediococcus pentosaceus ATCC 25745]
 gi|385273201|emb|CCG89904.1| 30S ribosomal protein S1 homolog [Pediococcus pentosaceus IE-3]
          Length = 402

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G VV GKV  + +FGA V   GG+  L  +  +S   + KP    K G E+  +VL 
Sbjct: 200 IKEGDVVTGKVARLTNFGAFVDL-GGIDGLVHISEISYQRVDKPSDVLKAGEEVQVKVLS 258

Query: 556 VKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V ++  R++++ K+T       I  +  E     +  G + ++   G FV  + GV+G  
Sbjct: 259 VDAEKERVSLSIKQTQPGPWDNIEENAPEGA---VLDGKVKRLTDFGAFVEVFPGVEGLV 315

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       P+ +   GQ +K +++   PA  R+ LS 
Sbjct: 316 HISQISHKHIATPADVLKEGQDIKVKVLEVHPAEHRLALSI 356



 Score = 47.4 bits (111), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 146/353 (41%), Gaps = 32/353 (9%)

Query: 495 DVKPGMVVKGKVIAVDS-FGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +VK G VV G+V+ +D     IV   G GV+ + PL  +S   I     + K+G EL   
Sbjct: 21  EVKVGDVVTGEVLDIDDDRQVIVGIQGAGVEGVVPLRELSTQHIDNISDEVKIGDELELV 80

Query: 553 VLG-----VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           V+       +     ++ K+ L +     +   A   + L     +T++ K G  V    
Sbjct: 81  VISRIGDDKEGGSYLLSRKRLLARKVWKEIEEKAANNEELDVP--VTQVVKGGLVVDA-- 136

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDD 665
           GV+GF P S +  +   +  + Y  GQ +K +I+   P   R+ LS   ++   R ++  
Sbjct: 137 GVRGFIPASMIE-NRFVDDLNAYK-GQTLKVKIIEVKPEDNRLILSHKAVLNAEREAKRG 194

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYE 723
            V L S+  G  DVVT     +         G I        + +  V K   V+K G E
Sbjct: 195 EV-LASIKEG--DVVTGKVARLTNFGAFVDLGGIDGLVHISEISYQRVDKPSDVLKAGEE 251

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS----VVHGYVCNIIETGCF 778
              ++L +D E   + LS K       Q  P    +I  N+    V+ G V  + + G F
Sbjct: 252 VQVKVLSVDAEKERVSLSIK-------QTQPGPWDNIEENAPEGAVLDGKVKRLTDFGAF 304

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V     + G    S+      A  +     GQ ++  +L+V+    R+ LS+K
Sbjct: 305 VEVFPGVEGLVHISQISHKHIATPADVLKEGQDIKVKVLEVHPAEHRLALSIK 357



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 36/214 (16%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
            GGLVV  G  + G +  + ++N  V D            L+ Y +GQ +K K++E+    
Sbjct: 130  GGLVVDAG--VRGFIPASMIENRFVDD------------LNAY-KGQTLKVKIIEVKPE- 173

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                 + LS ++ L+              +   K  E +  +    +V G V  +T+ G 
Sbjct: 174  --DNRLILSHKAVLNA-------------EREAKRGEVLASIKEGDVVTGKVARLTNFGA 218

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ L   +D  V +S +S   V+ P      G+ V  +VLSV+   +RV +++K +    
Sbjct: 219  FVDLG-GIDGLVHISEISYQRVDKPSDVLKAGEEVQVKVLSVDAEKERVSLSIKQTQPGP 277

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                E     N   G ++ G++KR+  +G F+ +
Sbjct: 278  WDNIE----ENAPEGAVLDGKVKRLTDFGAFVEV 307



 Score = 40.0 bits (92), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 34/193 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            I EGD+V G++++ L+  G  V   G  + G VH +E+    V  P         D L  
Sbjct: 200  IKEGDVVTGKVAR-LTNFGAFVDLGG--IDGLVHISEISYQRVDKP--------SDVLKA 248

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               G+ V+ KVL +         V LS++ +  G               P  ++E  E+ 
Sbjct: 249  ---GEEVQVKVLSVDAEKE---RVSLSIKQTQPG---------------PWDNIE--ENA 285

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
                ++ G VK +T  G F+ +   ++  V +S +S  ++ +P      G+ +  +VL V
Sbjct: 286  PEGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLKEGQDIKVKVLEV 345

Query: 1437 EPLSKRVEVTLKT 1449
             P   R+ +++K 
Sbjct: 346  HPAEHRLALSIKA 358


>gi|30249909|ref|NP_841979.1| 30S ribosomal protein S1 [Nitrosomonas europaea ATCC 19718]
 gi|30180946|emb|CAD85873.1| Ribosomal protein S1:S1 RNA binding domain [Nitrosomonas europaea
           ATCC 19718]
          Length = 572

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 154/361 (42%), Gaps = 30/361 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++ G VV+G V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +V
Sbjct: 196 ASLQDGAVVQGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPTEVINVGDEVTAKV 254

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+      + +   Y + T R+   G +T +  +G FV    G++G
Sbjct: 255 LKFDQEKNRVSLGLKQLTEDPWIGLSRRYPQGT-RIF--GKVTNMTDYGAFVEIEQGIEG 311

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLV-K 668
               SE+   +    PS +  +G  V+  I+      RRI+L     +P    E  L  +
Sbjct: 312 LVHVSEMDWTNKNVYPSKIVQLGDEVEVMILEIDEDRRRISLGMKQCRPNPWEEFSLSHE 371

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  V+G +  +T     +++   G   G +   HL+D   +    K++   K G E + 
Sbjct: 372 KGDKVTGQIKSITDFG--LFIGLPGNIDGLV---HLSDLSWNQPGEKAISEFKKGDEVEA 426

Query: 727 -LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-----PNSVVHGYVCNIIETGCFVR 780
            +L +D E   + L  K        QL  D  +I+      NS+V G V ++   G  + 
Sbjct: 427 VVLSIDVEKERISLGIK--------QLEGDPFNIYVASHDKNSIVKGTVKSVDAKGAVIA 478

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G+   S+    +  D+      G  + + I++++ +   I+LS+K       D 
Sbjct: 479 LTDEVEGYLRASEFSRDKIEDIRSRVNEGDEIEAMIINIDRKNRSISLSVKARIQDEEDK 538

Query: 841 S 841
           +
Sbjct: 539 A 539



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 19/126 (15%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +  L    +VQG VKN+T  G F+ L   +D  + +++L+   V+ P +   +G  V 
Sbjct: 193  ELLASLQDGAVVQGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVKHPTEVINVGDEVT 251

Query: 1431 GRVLSVEPLSKRVEVTLK--TSD-----SRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
             +VL  +    RV + LK  T D     SR   Q           G  + G++  +  YG
Sbjct: 252  AKVLKFDQEKNRVSLGLKQLTEDPWIGLSRRYPQ-----------GTRIFGKVTNMTDYG 300

Query: 1484 LFITIE 1489
             F+ IE
Sbjct: 301  AFVEIE 306


>gi|389575640|ref|ZP_10165668.1| ribosomal protein S1 [Eubacterium cellulosolvens 6]
 gi|389311125|gb|EIM56058.1| ribosomal protein S1 [Eubacterium cellulosolvens 6]
          Length = 362

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 17/245 (6%)

Query: 414 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRIL 468
           +KVVRV  G GL +++    V  PA + +SD  E+++ K     +E K  E +  R RI+
Sbjct: 112 AKVVRVLNG-GLSVNVDGARVFIPASL-VSDTFEKDLTKYMDQEIEFKIIEFNPKRRRII 169

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
           G R     A    K  A E L F+H  +  G VV+G V  +  FGA +   GG   L  +
Sbjct: 170 GDRKQLVAAE---KKKAQEEL-FSH--ITVGDVVEGVVKNITDFGAFIDL-GGADGLLHI 222

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
             MS   +  P     VG ++   +  +K  RI ++ K       L+    YA  T   +
Sbjct: 223 SEMSWGRVDNPKSIVAVGDKIKVLIKDIKGDRIALSLKFEDQNPWLSADEKYAVGT---V 279

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G + ++   G FV    G+      S++  D   +P+ +  +GQ +   I+    A R
Sbjct: 280 VTGKVARMTDFGAFVELEPGIDALLHVSQISRDHVDKPADVLAIGQDITAEIVDFNAADR 339

Query: 649 RINLS 653
           +I+LS
Sbjct: 340 KISLS 344



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 75/190 (39%), Gaps = 35/190 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           SHI    VV G V NI + G F+  LG   G    S+   G+  +      VG  ++  I
Sbjct: 189 SHITVGDVVEGVVKNITDFGAFID-LGGADGLLHISEMSWGRVDNPKSIVAVGDKIKVLI 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            D+  +  RI LSLK                  E++   L +           E + +G+
Sbjct: 248 KDIKGD--RIALSLK-----------------FEDQNPWLSAD----------EKYAVGT 278

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAE 931
           V+ GKV    DFG  V  E   D    ++     H       +  G  I A I+D   A+
Sbjct: 279 VVTGKVARMTDFGAFVELEPGIDALLHVSQISRDHVDKPADVLAIGQDITAEIVDFNAAD 338

Query: 932 RLVDLSLKTV 941
           R + LS+K +
Sbjct: 339 RKISLSVKAL 348



 Score = 44.3 bits (103), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V+G VKN+T  G FI L    D  + +S +S G V++P+    +G  +  +VL  +   
Sbjct: 196  VVEGVVKNITDFGAFIDLG-GADGLLHISEMSWGRVDNPKSIVAVGDKI--KVLIKDIKG 252

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             R+ ++LK  D      ++        VG +V G++ R+  +G F+ +E
Sbjct: 253  DRIALSLKFEDQNPWLSAD----EKYAVGTVVTGKVARMTDFGAFVELE 297


>gi|71892158|ref|YP_277890.1| 30S ribosomal protein S1 [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796264|gb|AAZ41015.1| 30S ribosomal subunit protein S1 [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 564

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 149/357 (41%), Gaps = 38/357 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G+ ++G V  +  +GA +   GGV  L  +  M+   +  P     VG E++ +VL    
Sbjct: 192 GIEIRGVVKNLTDYGAFIDL-GGVDGLLHITDMAWKRVKHPSDIVNVGDEIIVKVLRFDR 250

Query: 559 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +RI V+   K L +   A +    +   +LI  G +T +  +GCF+   +GV+G    SE
Sbjct: 251 ERIRVSLGLKQLGEDPWAAIVQRHKEGSKLI--GQVTNLTDYGCFIEIEDGVEGLVHVSE 308

Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----DDLVKLGSL 672
           +   +    PS +  VG+ V+  ++      RRI+L   +K  +++      D+   G  
Sbjct: 309 MDWTNKNIHPSKVVAVGESVEVMVLDIDKERRRISLG--LKQCKINPWQKFSDMYNRGDR 366

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLV 729
           V G +  +T   + +     G   G     HL+D   +L +   +    K       +L 
Sbjct: 367 VMGRIKSITDFGIFI-----GLEGGIDGLVHLSDISWYLSNEEAVNKYKKGDEIIAVVLQ 421

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIH-----PNSVVHGYVCNIIETGCFVRFLGR 784
           +D E   + L  K        QL  D  +++       S+V G + +I E G     L  
Sbjct: 422 VDAERERISLGIK--------QLTEDPLNVYLSAHKKGSIVSGKILSIDEKGGVTVTLDE 473

Query: 785 --LTGFAPRSKAVDGQRADLSKTY---YVGQSVRSNILDVNSETGRITLSLKQSCCS 836
             + G+     AV   ++   KTY   ++G  + + +  V+ +   I LS    C S
Sbjct: 474 NMVIGYLS-IPAVSNNKSTHKKTYMSLHIGNDILATLDGVDRKNRIINLSACNICDS 529



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 13/111 (11%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-SPEKEFPIGKLVAGRVLSVEPLSKR 1442
            G V N+T  GCFI +   ++  V +S +        P K   +G+ V   VL ++   +R
Sbjct: 282  GQVTNLTDYGCFIEIEDGVEGLVHVSEMDWTNKNIHPSKVVAVGESVEVMVLDIDKERRR 341

Query: 1443 VEVTLKTSDSRTASQSEIN---NLSNLH-VGDIVIGQIKRVESYGLFITIE 1489
            + + LK        Q +IN     S+++  GD V+G+IK +  +G+FI +E
Sbjct: 342  ISLGLK--------QCKINPWQKFSDMYNRGDRVMGRIKSITDFGIFIGLE 384


>gi|157738252|ref|YP_001490936.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
 gi|157700106|gb|ABV68266.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
          Length = 550

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 109/514 (21%), Positives = 216/514 (42%), Gaps = 73/514 (14%)

Query: 456 KYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
           KY  G  + V ++G +      +   +L+   F+  V TH +    + ++GK+++V   G
Sbjct: 67  KYNVGDVIPVMLMGNKGERPNISHKKVLQKEKFDNFVKTHGEDFEDVTIEGKIVSVKQKG 126

Query: 514 A-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 570
             +++   G +   P   M++  +   G    +G  +  +V+ V   +  I V+ KK + 
Sbjct: 127 GFVIEDAAGCEYFMP---MAQSYLKTQG---AIGKTVKAKVIKVNKAQNSIIVSRKKLIE 180

Query: 571 KSKLAILSSYAEATDRL-ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           +SK    +  AE  ++    +G I KI  +G FV    G+ G    +E+       P++ 
Sbjct: 181 ESKNIKDNKVAEILEKKEAINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPANY 239

Query: 630 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 686
           Y+ G  V   +++   A + ++LS    +  P +  +D L ++G  ++  V V    +  
Sbjct: 240 YNEGDEVSVVVLAYDKAKQHLSLSIKAALSNPWKEIKDQL-EVGDTIT--VTVSNFESYG 296

Query: 687 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLL 739
            +V      +G +       H+   +  K++  P      G E + +++ L+ E   L +
Sbjct: 297 AFVDLGNDIEGLL-------HISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRV 349

Query: 740 SAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           S K     + Q+ P +   + H    V+ G +  + + G FV  +G + G     +A   
Sbjct: 350 SLK-----NLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAFVN-IGDVDGLLHNEEASWE 403

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
             A     +  G  V   I+ ++ E   I+LS+K    S + A   Q+ + L        
Sbjct: 404 SNAKCKSLFKKGDEVEVRIIKIDKEKENISLSIKD--ISDSPAKRFQDAYKL-------- 453

Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ---LAGATV 914
                            G +++G V +  DFG+ +  E + D  G I +     L    V
Sbjct: 454 -----------------GDIVKGPVKDIKDFGIFIKLENNLD--GLIRNEDFGPLKADEV 494

Query: 915 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
           ++G  I+A I+++   +  V LS++ +   + RE
Sbjct: 495 KNGDEIEAVIINIDTKKNRVRLSVRRLEQQQERE 528



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 140/312 (44%), Gaps = 49/312 (15%)

Query: 1183 ISRHLKAQLFILDSA----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            +S   K    I D+A    + P      + +  IGK V   V+ +NK +  + +V R   
Sbjct: 120  VSVKQKGGFVIEDAAGCEYFMPMAQSYLKTQGAIGKTVKAKVIKVNKAQNSI-IVSRK-- 176

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
              + +++ +I ++ +   + + + + G I KI S   G+ V +G  + G V++ E+    
Sbjct: 177  -KLIEESKNIKDNKVAEILEKKEAINGTIKKITSY--GMFVDLGG-IDGLVNYNEI---- 228

Query: 1299 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1358
                   Y +G  +P + Y+EG  V   VL   +  +   H+ LS++++L          
Sbjct: 229  ------SY-KGPVNPANYYNEGDEVSVVVLAYDKAKQ---HLSLSIKAALS--------- 269

Query: 1359 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVE 1417
                   P K ++   ++   + V   V N  S G F+ L   ++  + +S +S +  ++
Sbjct: 270  ------NPWKEIKDQLEVGDTITVT--VSNFESYGAFVDLGNDIEGLLHISEISWNKNLK 321

Query: 1418 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQI 1476
            +P++   IG  +   V+ +    KR+ V+LK    +  ++       N H VGD++ G+I
Sbjct: 322  NPKELLTIGDEINVEVIELNVEQKRLRVSLKNLQEKPFTK-----FVNEHKVGDVIKGKI 376

Query: 1477 KRVESYGLFITI 1488
              +  +G F+ I
Sbjct: 377  ATLTDFGAFVNI 388


>gi|94968822|ref|YP_590870.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550872|gb|ABF40796.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
          Length = 539

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-KPGKKFKVGAELVFR 552
           S  K G  V+G V  +  FGA V+   G++ +  +  MS  + V KP    K G  +   
Sbjct: 266 SKYKVGDRVRGTVSRLMDFGAFVELEPGIEGMIHVSEMSWAKKVRKPSDLLKTGDSVEAV 325

Query: 553 VLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +LG+    KRI +  K+ L          +A  T   +  G +T ++K G FV+   GV+
Sbjct: 326 ILGINPAEKRIALGLKQALGDPWKDASQKFAAGT---VIEGPVTSVQKFGAFVQLTEGVE 382

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLV-- 667
           G    SEL       P  +  +GQ V+  +++  P  R+I LS   + PT +  D+ +  
Sbjct: 383 GMVHVSELSDKRVDHPQDVVKLGQRVQAMVLAIDPEKRQIKLSMKQLIPTGL--DEYIAE 440

Query: 668 -KLGSLVSGVV 677
            KLG +VSG V
Sbjct: 441 HKLGDIVSGRV 451



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 29/281 (10%)

Query: 580 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 639
           Y E  +    HG +  +  +G FV    GV      +E+       P+ +  VGQ V+ +
Sbjct: 180 YEELQEGATVHGTVRSLADYGAFVDI-GGVDALLHVAEISWSRVNSPADVLTVGQEVEAK 238

Query: 640 IMSSIPASRRINLSFMMKPTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
           ++   P  RRI+LS  MK  +    D V    K+G  V G V  +       +V  +   
Sbjct: 239 VIKVDPEKRRISLS--MKQLQPHPWDSVPSKYKVGDRVRGTVSRLMDFGA--FVELEPGI 294

Query: 696 KGTIPTEHLADHLEHATVMKSVIKP------GYEFDQLLV-LDNESSNLLLSAKYSLINS 748
           +G I       H+   +  K V KP      G   + +++ ++     + L  K +L + 
Sbjct: 295 EGMI-------HVSEMSWAKKVRKPSDLLKTGDSVEAVILGINPAEKRIALGLKQALGDP 347

Query: 749 AQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
            +    DAS      +V+ G V ++ + G FV+    + G    S+  D +         
Sbjct: 348 WK----DASQKFAAGTVIEGPVTSVQKFGAFVQLTEGVEGMVHVSELSDKRVDHPQDVVK 403

Query: 808 VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
           +GQ V++ +L ++ E  +I LS+KQ   +  D  ++ EH L
Sbjct: 404 LGQRVQAMVLAIDPEKRQIKLSMKQLIPTGLD-EYIAEHKL 443



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 106/237 (44%), Gaps = 40/237 (16%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G+ V   V+ ++ EK+ + L ++  Q            D++ +    GD V G +S+++
Sbjct: 231  VGQEVEAKVIKVDPEKRRISLSMKQLQPH--------PWDSVPSKYKVGDRVRGTVSRLM 282

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
                G  V++ P + G +H +E+           + +    P      G  V+  +L I+
Sbjct: 283  DF--GAFVELEPGIEGMIHVSEMS----------WAKKVRKPSDLLKTGDSVEAVILGIN 330

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1391
               +    + L L+ +L G    ++S                +  +   +++G V +V  
Sbjct: 331  PAEK---RIALGLKQAL-GDPWKDAS----------------QKFAAGTVIEGPVTSVQK 370

Query: 1392 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
             G F+ L+  ++  V +S LSD  V+ P+    +G+ V   VL+++P  +++++++K
Sbjct: 371  FGAFVQLTEGVEGMVHVSELSDKRVDHPQDVVKLGQRVQAMVLAIDPEKRQIKLSMK 427



 Score = 47.4 bits (111), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
            +T  +   + E+L     V G V+++   G F+ +   +DA + ++ +S   V SP    
Sbjct: 171  ETRAQEGRRYEELQEGATVHGTVRSLADYGAFVDIG-GVDALLHVAEISWSRVNSPADVL 229

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
             +G+ V  +V+ V+P  +R+ +++K               S   VGD V G + R+  +G
Sbjct: 230  TVGQEVEAKVIKVDPEKRRISLSMKQLQPHPWDSVP----SKYKVGDRVRGTVSRLMDFG 285

Query: 1484 LFITIE 1489
             F+ +E
Sbjct: 286  AFVELE 291


>gi|315636540|ref|ZP_07891776.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|384156568|ref|YP_005539383.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
 gi|315479189|gb|EFU69886.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|345470122|dbj|BAK71573.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
          Length = 550

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 109/514 (21%), Positives = 216/514 (42%), Gaps = 73/514 (14%)

Query: 456 KYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
           KY  G  + V ++G +      +   +L+   F+  V TH +    + ++GK+++V   G
Sbjct: 67  KYNVGDVIPVMLMGNKGERPNISHKKVLQKEKFDNFVKTHGEDFEDVTIEGKIVSVKQKG 126

Query: 514 A-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 570
             +++   G +   P   M++  +   G    +G  +  +V+ V   +  I V+ KK + 
Sbjct: 127 GFVIEDAAGCEYFMP---MAQSYLKTQG---AIGKTVKAKVIKVNKAQNSIIVSRKKLIE 180

Query: 571 KSKLAILSSYAEATDRL-ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           +SK    +  AE  ++    +G I KI  +G FV    G+ G    +E+       P++ 
Sbjct: 181 ESKNIKDNKVAEILEKKEAINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPANY 239

Query: 630 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 686
           Y+ G  V   +++   A + ++LS    +  P +  +D L ++G  ++  V V    +  
Sbjct: 240 YNEGDEVSVVVLAYDKAKQHLSLSIKAALSNPWKEIKDQL-EVGDTIT--VTVSNFESYG 296

Query: 687 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLL 739
            +V      +G +       H+   +  K++  P      G E + +++ L+ E   L +
Sbjct: 297 AFVDLGNDIEGLL-------HISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRV 349

Query: 740 SAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           S K     + Q+ P +   + H    V+ G +  + + G FV  +G + G     +A   
Sbjct: 350 SLK-----NLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAFVN-IGDVDGLLHNEEASWE 403

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
             A     +  G  V   I+ ++ E   I+LS+K    S + A   Q+ + L        
Sbjct: 404 SNAKCKTLFKKGDEVEVRIIKIDKEKENISLSIKD--ISDSPAKRFQDAYKL-------- 453

Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ---LAGATV 914
                            G +++G V +  DFG+ +  E + D  G I +     L    V
Sbjct: 454 -----------------GDIVKGPVKDIKDFGIFIKLENNLD--GLIRNEDFGPLKADEV 494

Query: 915 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
           ++G  I+A I+++   +  V LS++ +   + RE
Sbjct: 495 KNGDEIEAVIINIDTKKNRVRLSVRRLEQQQERE 528



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 140/312 (44%), Gaps = 49/312 (15%)

Query: 1183 ISRHLKAQLFILDSA----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            +S   K    I D+A    + P      + +  IGK V   V+ +NK +  + +V R   
Sbjct: 120  VSVKQKGGFVIEDAAGCEYFMPMAQSYLKTQGAIGKTVKAKVIKVNKAQNSI-IVSRK-- 176

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
              + +++ +I ++ +   + + + + G I KI S   G+ V +G  + G V++ E+    
Sbjct: 177  -KLIEESKNIKDNKVAEILEKKEAINGTIKKITSY--GMFVDLGG-IDGLVNYNEI---- 228

Query: 1299 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1358
                   Y +G  +P + Y+EG  V   VL   +  +   H+ LS++++L          
Sbjct: 229  ------SY-KGPVNPANYYNEGDEVSVVVLAYDKAKQ---HLSLSIKAALS--------- 269

Query: 1359 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVE 1417
                   P K ++   ++   + V   V N  S G F+ L   ++  + +S +S +  ++
Sbjct: 270  ------NPWKEIKDQLEVGDTITVT--VSNFESYGAFVDLGNDIEGLLHISEISWNKNLK 321

Query: 1418 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQI 1476
            +P++   IG  +   V+ +    KR+ V+LK    +  ++       N H VGD++ G+I
Sbjct: 322  NPKELLTIGDEINVEVIELNVEQKRLRVSLKNLQEKPFTK-----FVNEHKVGDVIKGKI 376

Query: 1477 KRVESYGLFITI 1488
              +  +G F+ I
Sbjct: 377  ATLTDFGAFVNI 388


>gi|408415249|ref|YP_006625956.1| 30S ribosomal protein S1 [Bordetella pertussis 18323]
 gi|410421035|ref|YP_006901484.1| 30S ribosomal protein S1 [Bordetella bronchiseptica MO149]
 gi|427818082|ref|ZP_18985145.1| 30S ribosomal protein S1 [Bordetella bronchiseptica D445]
 gi|427826016|ref|ZP_18993078.1| 30S ribosomal protein S1 [Bordetella bronchiseptica Bbr77]
 gi|33571751|emb|CAE41252.1| 30S ribosomal protein S1 [Bordetella pertussis Tohama I]
 gi|401777419|emb|CCJ62714.1| 30S ribosomal protein S1 [Bordetella pertussis 18323]
 gi|408448330|emb|CCJ60011.1| 30S ribosomal protein S1 [Bordetella bronchiseptica MO149]
 gi|410569082|emb|CCN17167.1| 30S ribosomal protein S1 [Bordetella bronchiseptica D445]
 gi|410591281|emb|CCN06379.1| 30S ribosomal protein S1 [Bordetella bronchiseptica Bbr77]
          Length = 576

 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 153/356 (42%), Gaps = 36/356 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 207 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 265

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 266 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 322

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 323 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 380

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     +  ++V   K G E + +++
Sbjct: 381 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVL 435

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVRFL 782
            +D E   + L  K        QL  D      A+H    +VV G + ++   G  +   
Sbjct: 436 GIDTEKERISLGIK--------QLEGDPFNNFVATH-DKGAVVPGTIKSVEPKGAVITLS 486

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
             + G+   S+   G+  D +     G+++ + I++++ +   I LS+K    + T
Sbjct: 487 VDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAET 542



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 132/306 (43%), Gaps = 47/306 (15%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V A++L  D     V L +     +P++   R  P       KV ++ D    V V+ 
Sbjct: 254 QEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEA 313

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ +  E  V ++++        R RI LG +    
Sbjct: 314 GIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDED-------RRRISLGMKQC-- 364

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + + +E      ++ K G  V+G + ++  FG  V  PGG+  L    H+S+  
Sbjct: 365 ------RQNPWEEFA---TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLV---HLSDLS 412

Query: 536 IVKPG----KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDR-LI 588
             + G    + FK G EL   VLG+ +  +RI++  K+     +    +++    D+  +
Sbjct: 413 WTESGEEAVRNFKKGDELEAVVLGIDTEKERISLGIKQL----EGDPFNNFVATHDKGAV 468

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G I  +E  G  +     V+G+   SE+      + +++   G+ ++  I++    +R
Sbjct: 469 VPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKAR 528

Query: 649 RINLSF 654
            I LS 
Sbjct: 529 SIQLSI 534



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 134/333 (40%), Gaps = 62/333 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 207  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 259

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 260  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 309

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 310  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 355

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 356  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 399

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + ES E   + F  G  +   VL ++   +R+ + +K  +     
Sbjct: 400  GGIDGLVHLSDLS--WTESGEEAVRNFKKGDELEAVVLGIDTEKERISLGIKQLEG---- 453

Query: 1457 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1488
                NN    H  G +V G IK VE  G  IT+
Sbjct: 454  -DPFNNFVATHDKGAVVPGTIKSVEPKGAVITL 485



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 162/411 (39%), Gaps = 68/411 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 168  EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 225

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ         
Sbjct: 226  LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ--------- 276

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    L      G+ L             GKV    D+G  V  E   +  
Sbjct: 277  ------LGEDPWVGLARRYPQGTRLF------------GKVTNLTDYGAFVEVEAGIEGL 318

Query: 902  GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN-RQ 954
              ++        V+       G  ++  +L++ +  R + L +K    + + E  +N ++
Sbjct: 319  VHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKR 378

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQ-- 1012
              K +   ++  D GV                 + LP      G   +SD +  +  +  
Sbjct: 379  GDKVRGAIKSITDFGVF----------------VGLP--GGIDGLVHLSDLSWTESGEEA 420

Query: 1013 -KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             + F  G  + A V+ + +     R+ L +K +     ++       +++D G++V   I
Sbjct: 421  VRNFKKGDELEAVVLGIDTEKE--RISLGIKQLEGDPFNNF-----VATHDKGAVVPGTI 473

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
              ++P    +   +   G +  +E++   S  VE+  +  K G+ + A I+
Sbjct: 474  KSVEPKGAVITLSVDVEGYLRASEIS---SGRVEDATTVLKAGENIEAMIV 521


>gi|421451964|ref|ZP_15901325.1| SSU ribosomal protein S1P [Streptococcus salivarius K12]
 gi|400182395|gb|EJO16657.1| SSU ribosomal protein S1P [Streptococcus salivarius K12]
          Length = 434

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 169/385 (43%), Gaps = 40/385 (10%)

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GV 522
           RVRI G+  LE L     + + FE L+ + S+V  G VV  +VI+VD+  A V   G G+
Sbjct: 21  RVRI-GWLLLEDL----FRMNEFEELLNSVSEVNTGDVVTAEVISVDNDQANVVIEGTGI 75

Query: 523 KALCPLPHMSE------FEIVKPGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLA 575
           + +     ++        ++VK G+  +V   LV R V+G  +  +T    K  ++++ A
Sbjct: 76  EGVLTRRELTNDRDANVADLVKVGETLEV---LVLRQVVGKDTDTVTYLVSKKRLEARKA 132

Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
                    + +   G  T+  K G  V F  G++GF P S +  D     ++   VGQ 
Sbjct: 133 WDKLVGREEEVVTVKG--TRAVKGGLSVEF-EGLRGFIPASMI--DTRFVRNTEQFVGQE 187

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSEDDL------VKLGSLVSGVVDVVTPNAVVVYV 689
              +I    PA  R  LS        + +        +++GS+V+G V  +T     + +
Sbjct: 188 FDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSFGAFIDL 247

Query: 690 IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINS 748
              G   G +    L+   E     KSV+  G E + ++L +D E+  + LS K +    
Sbjct: 248 ---GGVDGLVHVTELSH--ERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTPG- 301

Query: 749 AQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
               P D     +    V+ G V  + + G FV  L  + G    S+    +  +     
Sbjct: 302 ----PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVL 357

Query: 807 YVGQSVRSNILDVNSETGRITLSLK 831
            VGQ V   +L+VN++  R++LS+K
Sbjct: 358 SVGQDVTVKVLEVNADAERVSLSIK 382



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 156/385 (40%), Gaps = 58/385 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           G++G   R EL  D     + +  VG+ ++  ++  +       +++++   R+      
Sbjct: 74  GIEGVLTRRELTNDRDANVADLVKVGETLEVLVLRQVVGKDTDTVTYLVSKKRLEARK-- 131

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKPG 721
               LV    +VVT        +  G S      +G IP    A  ++   V  +    G
Sbjct: 132 AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGLRGFIP----ASMIDTRFVRNTEQFVG 185

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFV 779
            EFD ++  +D   +  +LS +  +   A +   +  S +   S+V G V  +   G F+
Sbjct: 186 QEFDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSFGAFI 245

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             LG + G    ++    +         VG  V   +L ++ E GR++LSLK +     D
Sbjct: 246 D-LGGVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTPGPWD 304

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                    +E+K+A                    G VIEGKV    DFG  V  E    
Sbjct: 305 G--------VEQKLAA-------------------GDVIEGKVKRLTDFGAFV--EVLPG 335

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVF---IDRFRE 948
           + G +   Q++   VE+       G  +   +L+V A AER V LS+K +     +   E
Sbjct: 336 IDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAER-VSLSIKALEERPANAEGE 394

Query: 949 ANSNRQAQKKKRKREASKDLGVHQT 973
            N  RQ++ ++ KR+  +D  + +T
Sbjct: 395 NNEKRQSRPRRPKRQEKRDYELPET 419



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 34/203 (16%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G IV G+++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 228  GSIVTGKVARLTSF--GAFIDLG-GVDGLVHVTELSH-----------ERNVSPKSVVSV 273

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  V+ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 274  GDEVEVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 313

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 314  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNAD 373

Query: 1440 SKRVEVTLKTSDSRTASQSEINN 1462
            ++RV +++K  + R A+    NN
Sbjct: 374  AERVSLSIKALEERPANAEGENN 396



 Score = 44.7 bits (104), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV G V  +TS G FI L   +D  V ++ LS     SP+    +G  V  +VL+++  +
Sbjct: 230  IVTGKVARLTSFGAFIDLG-GVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAIDEEA 288

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 289  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 332


>gi|182414675|ref|YP_001819741.1| 30S ribosomal protein S1 [Opitutus terrae PB90-1]
 gi|177841889|gb|ACB76141.1| ribosomal protein S1 [Opitutus terrae PB90-1]
          Length = 557

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 150/361 (41%), Gaps = 42/361 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG + +G V  +  FGA +   G +  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 184 IQPGQIRRGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSEMLKQGEEVQVMIIE 242

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  + +R+++  K+T       I   Y         HG +  +  +G FV    GV+G  
Sbjct: 243 VNREKERVSLGLKQTTKNPWDEIDRKYPVGAK---VHGKVVNLVPYGAFVEIEPGVEGLV 299

Query: 614 PRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 668
             +E+       +PS +  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 300 HITEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLRQLEPNPW---DMVRHNY 356

Query: 669 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 722
            +G+ V G V  +T     + +      +G     H++D      + H +    ++K G 
Sbjct: 357 PIGARVRGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EILKKGD 408

Query: 723 EFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETG 776
           E D +++ +D +   + L  K        QL +D      +H     VV G V  +   G
Sbjct: 409 EVDAIVLDVDPQQQRISLGMK--------QLATDPWSDIDAHFRIGDVVTGTVTKLTSFG 460

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            FV     + G    S+  + +   +      GQ V + ++ ++ E  R+ LS+K +  S
Sbjct: 461 AFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLSIKAANYS 520

Query: 837 S 837
           +
Sbjct: 521 A 521



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 116/568 (20%), Positives = 226/568 (39%), Gaps = 85/568 (14%)

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V   L   SS+ +  +  I  G IT+I ++   V      +G  P +E  +D G      
Sbjct: 4    VMQDLLAQSSFDKLKEGSIVPGVITEIRQNEVVVDIGGKSEGLVPANEF-IDIGE----- 57

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVV 686
              VG  ++  +           LSF +   + + D+++     GS+ +G V       ++
Sbjct: 58   LQVGSTIEVLVQKLEGKDGAPILSFDLAEQKKNWDNILTKFPEGSVATGRVKAKVKGGLI 117

Query: 687  VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
            V +    +    +P  H+   ++    +   +   Y+F ++L ++ E  N++LS +  LI
Sbjct: 118  VSIGVDAF----MPASHI--DVQPPKNLDQYVGQTYDF-KVLKINLERKNIVLS-RRELI 169

Query: 747  NSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
               +     A    I P  +  G V NI + G F+   G + G    +    G+ +  S+
Sbjct: 170  EEQRTNKRRALLDSIQPGQIRRGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSE 228

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
                G+ V+  I++VN E  R++L LKQ+  +  D         ++ K            
Sbjct: 229  MLKQGEEVQVMIIEVNREKERVSLGLKQTTKNPWDE--------IDRK------------ 268

Query: 865  ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA------GATVESGS 918
                   + +G+ + GKV     +G  V  E   +    IT              ++ G 
Sbjct: 269  -------YPVGAKVHGKVVNLVPYGAFVEIEPGVEGLVHITEMSWTKRITKPSELLKVGQ 321

Query: 919  VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
             + A +L + K E+ + L L+ +  + +     N     + R +  +       T  A +
Sbjct: 322  ELDAVVLGIQKEEQKISLGLRQLEPNPWDMVRHNYPIGARVRGKVRN-----MTTYGAFI 376

Query: 979  EIVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTA 1034
            E+                I G   VSD + T+K   P +    G  V A V+ +      
Sbjct: 377  EL-------------EEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ- 422

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R+ L +K ++    S        + + +G +V   +T++      ++   G  G +HI+
Sbjct: 423  -RISLGMKQLATDPWSDI-----DAHFRIGDVVTGTVTKLTSFGAFVELKDGIDGLVHIS 476

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARII 1122
            ++++++ + V+++    K GQ VTAR+I
Sbjct: 477  QISEERIDKVKDV---LKPGQQVTARVI 501



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 186/483 (38%), Gaps = 108/483 (22%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 556
           G V  G+V A    G IV    GV A  P  H+     V+P K     VG    F+VL +
Sbjct: 101 GSVATGRVKAKVKGGLIVSI--GVDAFMPASHID----VQPPKNLDQYVGQTYDFKVLKI 154

Query: 557 KSKRIT-VTHKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
             +R   V  ++ L++      + A+L S        I  G +  I   G F+   +G+ 
Sbjct: 155 NLERKNIVLSRRELIEEQRTNKRRALLDSIQPGQ---IRRGVVKNITDFGAFIDL-DGMD 210

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-- 668
           G    +++       PS M   G+ V+  I+       R++L  + + T+   D++ +  
Sbjct: 211 GLLHITDMSWGRISHPSEMLKQGEEVQVMIIEVNREKERVSLG-LKQTTKNPWDEIDRKY 269

Query: 669 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM---KSVIKP---- 720
            +G+ V G V  + P    V +            E   + L H T M   K + KP    
Sbjct: 270 PVGAKVHGKVVNLVPYGAFVEI------------EPGVEGLVHITEMSWTKRITKPSELL 317

Query: 721 --GYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD-ASHIHP-NSVVHGYVCNIIET 775
             G E D +++ +  E   + L  +    N     P D   H +P  + V G V N+   
Sbjct: 318 KVGQELDAVVLGIQKEEQKISLGLRQLEPN-----PWDMVRHNYPIGARVRGKVRNMTTY 372

Query: 776 GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYV---------GQSVRSNILDVNSETG 824
           G F+             + +DG    +D+S T  V         G  V + +LDV+ +  
Sbjct: 373 GAFIEL----------EEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ 422

Query: 825 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
           RI+L +KQ   ++   S +  HF                          IG V+ G V +
Sbjct: 423 RISLGMKQ--LATDPWSDIDAHFR-------------------------IGDVVTGTVTK 455

Query: 885 SNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLS 937
              FG  V  ++  D  G +   Q++   ++        G  + A ++ + + ER + LS
Sbjct: 456 LTSFGAFVELKDGID--GLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLS 513

Query: 938 LKT 940
           +K 
Sbjct: 514 IKA 516



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G V+N+T+ G FI L   +D  V +S++S    V  P +    G  V   VL V+P  
Sbjct: 362  VRGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQ 421

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            +R+ + +K     T   S+I+  ++  +GD+V G + ++ S+G F+ +++
Sbjct: 422  QRISLGMKQ--LATDPWSDID--AHFRIGDVVTGTVTKLTSFGAFVELKD 467



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 123/545 (22%), Positives = 216/545 (39%), Gaps = 84/545 (15%)

Query: 139 GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 198
           GV+ E+ + ++V+ + G   GL  A + +D          E         VG  +  +V 
Sbjct: 25  GVITEIRQNEVVVDIGGKSEGLVPANEFID--------IGE-------LQVGSTIEVLVQ 69

Query: 199 QLD-DDKKEIGKRKIWLSLRLSLLYKGLS--LETVQEGMVLTAYVKSIEDHGYILHFGLP 255
           +L+  D   I      LS  L+   K     L    EG V T  VK+    G I+  G+ 
Sbjct: 70  KLEGKDGAPI------LSFDLAEQKKNWDNILTKFPEGSVATGRVKAKVKGGLIVSIGVD 123

Query: 256 SFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 307
           +F   +P       S IDV+P        G      V  I+  RK + LS   + + +  
Sbjct: 124 AF---MP------ASHIDVQPPKNLDQYVGQTYDFKVLKINLERKNIVLSRR-ELIEEQR 173

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN------TFPTT 361
           T   + + +D + PG +    V++I + G  +       G   + H+ +      + P+ 
Sbjct: 174 TNKRRAL-LDSIQPGQIRRGVVKNITDFGAFIDL----DGMDGLLHITDMSWGRISHPSE 228

Query: 362 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPS----HVKVGDIYD 412
             K    Q ++V   I+ V+     V L L     NP+   +R  P     H KV ++  
Sbjct: 229 MLK----QGEEVQVMIIEVNREKERVSLGLKQTTKNPWDEIDRKYPVGAKVHGKVVNLVP 284

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
               V ++ G+  L+ I  T +S    +T          K  +  K G  +   +LG + 
Sbjct: 285 YGAFVEIEPGVEGLVHI--TEMSWTKRIT----------KPSELLKVGQELDAVVLGIQK 332

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
            E   +  L+            +   G  V+GKV  + ++GA ++   G+  +  +  MS
Sbjct: 333 EEQKISLGLRQLEPNPWDMVRHNYPIGARVRGKVRNMTTYGAFIELEEGIDGMVHVSDMS 392

Query: 533 EFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
               V  P +  K G E+   VL V  + +RI++  K+ L     + + ++    D  + 
Sbjct: 393 WTRKVNHPSEILKKGDEVDAIVLDVDPQQQRISLGMKQ-LATDPWSDIDAHFRIGD--VV 449

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +TK+   G FV   +G+ G    S++  +   +   +   GQ V  R++      RR
Sbjct: 450 TGTVTKLTSFGAFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERR 509

Query: 650 INLSF 654
           + LS 
Sbjct: 510 LGLSI 514



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 38/239 (15%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            DN+ T   EG +  GR+   + G  GL+V IG        F    +I V  P +      
Sbjct: 92   DNILTKFPEGSVATGRVKAKVKG--GLIVSIGVD-----AFMPASHIDVQPPKN------ 138

Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
               L  Y  GQ    KVL+I+   +   ++ LS R  ++   +     L           
Sbjct: 139  ---LDQY-VGQTYDFKVLKINLERK---NIVLSRRELIEEQRTNKRRAL----------- 180

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
              ++ + P  I +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ V 
Sbjct: 181  --LDSIQPGQIRRGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEEVQ 237

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              ++ V    +RV + LK +        EI+      VG  V G++  +  YG F+ IE
Sbjct: 238  VMIIEVNREKERVSLGLKQTTKN--PWDEIDR--KYPVGAKVHGKVVNLVPYGAFVEIE 292


>gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|417885402|ref|ZP_12529556.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
 gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|341595324|gb|EGS37973.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
          Length = 413

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I+KA   +      ++++PG VV+GKV  + +FGA V   GGV  L  +  +S   + KP
Sbjct: 183 IVKAEHEQAAEKIFAELQPGDVVEGKVARMTNFGAFVDL-GGVDGLVHVSEISYDHVDKP 241

Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
                 G ++  +VL V    +RI+++ K+TL       +   A A   L   G + ++ 
Sbjct: 242 SDVLSAGQDVKVKVLSVDPDRERISLSIKQTL-PGPWDDIEEKAPAGSTLT--GTVKRLT 298

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G FV  + GV+G    S++       P+ +   GQ V+ ++++  P  +R+ LS 
Sbjct: 299 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSM 355



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 136/350 (38%), Gaps = 55/350 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDIQKKFDDGETITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
           G E +  ++    S N L+ +   ++ +  +  ++   + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAELQPGDVVEGKVARMTNFGAF 218

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+         S     GQ V+  +L V+ +  RI+LS+KQ+     
Sbjct: 219 VD-LGGVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDRERISLSIKQTLPGPW 277

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +EEK                      GS + G V     FG  V  E   
Sbjct: 278 DD--------IEEKAPA-------------------GSTLTGTVKRLTSFGAFV--EVFP 308

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V G      I+H  +A     ++ G  +Q  +L+V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMKAL 358



 Score = 47.8 bits (112), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +L P  +V+G V  +T+ G F+ L   +D  V +S +S  +V+ P      G+ V  +VL
Sbjct: 198  ELQPGDVVEGKVARMTNFGAFVDLG-GVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVL 256

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            SV+P  +R+ +++K +        E         G  + G +KR+ S+G F+ +
Sbjct: 257  SVDPDRERISLSIKQTLPGPWDDIE----EKAPAGSTLTGTVKRLTSFGAFVEV 306



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  GD+V G+++++ +   G  V +G  + G VH +E+    V  P         D LS 
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFVDLG-GVDGLVHVSEISYDHVDKP--------SDVLSA 247

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQDVKVKVLSVDPDRE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P    + G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+
Sbjct: 284  APAGSTLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLN 343

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEIN 1461
            V+P  +R+ +++K  + R   +   N
Sbjct: 344  VDPERQRLGLSMKALEERPKGEDSDN 369



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 147/351 (41%), Gaps = 30/351 (8%)

Query: 496 VKPGMVVKGKVIAVDS-FGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 554 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           +       ++    ++H++   +     +    +  + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDDGETITAK--VTQAVKGGLVVDA--G 136

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 664
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +  + +E 
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEK 194

Query: 665 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 721
              +L  G +V G V  +T     V +   G   G +    ++ DH++  +    V+  G
Sbjct: 195 IFAELQPGDVVEGKVARMTNFGAFVDL---GGVDGLVHVSEISYDHVDKPS---DVLSAG 248

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            +   ++L +D +   + LS K +L      +   A      S + G V  +   G FV 
Sbjct: 249 QDVKVKVLSVDPDRERISLSIKQTLPGPWDDIEEKAP---AGSTLTGTVKRLTSFGAFVE 305

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+      A  +     GQ V+  +L+V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMK 356


>gi|90961864|ref|YP_535780.1| 30S ribosomal protein S1 [Lactobacillus salivarius UCC118]
 gi|90821058|gb|ABD99697.1| SSU ribosomal protein S1P [Lactobacillus salivarius UCC118]
          Length = 399

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG E+  +VL V +
Sbjct: 201 GDVVEGKVARLTNFGAFIDL-GGVDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDA 259

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  RI+++ K+TL +    +    AE     +  G + ++   G FV    GV+G    S
Sbjct: 260 EKGRISLSIKQTLPEPWEQVPEQVAEGD---VLEGTVKRLTSFGAFVEVLPGVEGLVHIS 316

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++       P+ +   G+ V+ +++S   A  R+ LS 
Sbjct: 317 QISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSI 354



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 151/372 (40%), Gaps = 59/372 (15%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 663
            GV+G  P  EL ++   + +  Y  G ++   +++ I  S +   S+++   R+     
Sbjct: 47  TGVEGVVPVRELSVN-ADKVADTYKAGDMLDLVVIARI-GSDKEGGSYLLSQRRLEARRV 104

Query: 664 ----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
               +D  K G  +   V  V    +VV    +G+   ++ ++H  + L           
Sbjct: 105 WNEIEDKFKAGETIKAPVTQVVKGGLVVDAGVRGFVPASMVSDHFVEDLNQFK------- 157

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGC 777
            G E +  +V    S N L+ ++  L+ + ++    A    +    VV G V  +   G 
Sbjct: 158 -GQELELKIVEIEPSDNRLILSRKELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGA 216

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           F+  LG + G    S+    +    +    VGQ V+  +L V++E GRI+LS+KQ+    
Sbjct: 217 FID-LGGVDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEP 275

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            +         + E++A                    G V+EG V     FG  V  E  
Sbjct: 276 WEQ--------VPEQVAE-------------------GDVLEGTVKRLTSFGAFV--EVL 306

Query: 898 SDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V G      I+H  +A     + SG  +Q  +L V  A+  + LS+K +   + + A 
Sbjct: 307 PGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSIKAL---QEKPAV 363

Query: 951 SNRQAQKKKRKR 962
             ++A  KK ++
Sbjct: 364 EKKEAAPKKEEK 375



 Score = 47.0 bits (110), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 158/364 (43%), Gaps = 29/364 (7%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKP 539
           +A+  E  + +  +VK G VVKG+V+ +D S   IV     GV+ + P+  +S     K 
Sbjct: 7   EANLLEEALNSVKEVKVGDVVKGEVLTIDESNQVIVGIENTGVEGVVPVRELS-VNADKV 65

Query: 540 GKKFKVGAELVFRVLG-VKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWIT 594
              +K G  L   V+  + S +   ++   L + +L     + E  D+          +T
Sbjct: 66  ADTYKAGDMLDLVVIARIGSDKEGGSY--LLSQRRLEARRVWNEIEDKFKAGETIKAPVT 123

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++ K G  V    GV+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS 
Sbjct: 124 QVVKGGLVVD--AGVRGFVPASMVS-DHFVEDLNQFK-GQELELKIVEIEPSDNRLILSR 179

Query: 655 --MMKPTRVSEDDLV--KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             +++  R ++   V  KL  G +V G V  +T     + +   G   G +    ++   
Sbjct: 180 KELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDL---GGVDGLVHVSEIS--Y 234

Query: 709 EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 767
           E        +K G E   ++L +D E   + LS K +L    +Q+P     +    V+ G
Sbjct: 235 ERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVP---EQVAEGDVLEG 291

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            V  +   G FV  L  + G    S+      A  ++    G+ V+  +L V++   R+ 
Sbjct: 292 TVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLA 351

Query: 828 LSLK 831
           LS+K
Sbjct: 352 LSIK 355



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L    +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +
Sbjct: 195  MEKLVAGDVVEGKVARLTNFGAFIDLG-GVDGLVHVSEISYERVNKPADALKVGQEVKVK 253

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            VLSV+    R+ +++K +      Q        +  GD++ G +KR+ S+G F+ +
Sbjct: 254  VLSVDAEKGRISLSIKQTLPEPWEQVP----EQVAEGDVLEGTVKRLTSFGAFVEV 305



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 13/201 (6%)

Query: 365 NDYNQHK--KVNARILFVDPTSRAVGLTLNPYLLHNR-----APPSHVKVGDIYDQSKVV 417
            D NQ K  ++  +I+ ++P+   + L+    +   R     A    +  GD+  + KV 
Sbjct: 151 EDLNQFKGQELELKIVEIEPSDNRLILSRKELVQAEREAKRQAVMEKLVAGDVV-EGKVA 209

Query: 418 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
           R+    G  +D+          V +S+++ E V K     K G  V+V++L     +G  
Sbjct: 210 RL-TNFGAFIDLGGVD----GLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRI 264

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
           +  +K +  E        V  G V++G V  + SFGA V+   GV+ L  +  +S   I 
Sbjct: 265 SLSIKQTLPEPWEQVPEQVAEGDVLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIA 324

Query: 538 KPGKKFKVGAELVFRVLGVKS 558
            P +    G ++  +VL V +
Sbjct: 325 TPNEVLTSGEKVQVKVLSVDA 345


>gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
 gi|385840473|ref|YP_005863797.1| 30S ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
 gi|417788386|ref|ZP_12436069.1| SSU ribosomal protein S1p [Lactobacillus salivarius NIAS840]
 gi|417810232|ref|ZP_12456911.1| 30S ribosomal protein S1 [Lactobacillus salivarius GJ-24]
 gi|418961421|ref|ZP_13513307.1| 30S ribosomal protein S1 [Lactobacillus salivarius SMXD51]
 gi|227867299|gb|EEJ74720.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
 gi|300214594|gb|ADJ79010.1| SSU ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
 gi|334308563|gb|EGL99549.1| SSU ribosomal protein S1p [Lactobacillus salivarius NIAS840]
 gi|335349028|gb|EGM50528.1| 30S ribosomal protein S1 [Lactobacillus salivarius GJ-24]
 gi|380343953|gb|EIA32300.1| 30S ribosomal protein S1 [Lactobacillus salivarius SMXD51]
          Length = 397

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG E+  +VL V +
Sbjct: 199 GDVVEGKVARLTNFGAFIDL-GGVDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDA 257

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  RI+++ K+TL +    +    AE     +  G + ++   G FV    GV+G    S
Sbjct: 258 EKGRISLSIKQTLPEPWEQVPEQVAEGD---VLEGTVKRLTSFGAFVEVLPGVEGLVHIS 314

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++       P+ +   G+ V+ +++S   A  R+ LS 
Sbjct: 315 QISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSI 352



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 151/372 (40%), Gaps = 59/372 (15%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 663
            GV+G  P  EL ++   + +  Y  G ++   +++ I  S +   S+++   R+     
Sbjct: 45  TGVEGVVPVRELSVN-ADKVADTYKAGDMLDLVVIARI-GSDKEGGSYLLSQRRLEARRV 102

Query: 664 ----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
               +D  K G  +   V  V    +VV    +G+   ++ ++H  + L           
Sbjct: 103 WNEIEDKFKAGETIKAPVTQVVKGGLVVDAGVRGFVPASMVSDHFVEDLNQFK------- 155

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGC 777
            G E +  +V    S N L+ ++  L+ + ++    A    +    VV G V  +   G 
Sbjct: 156 -GQELELKIVEIEPSDNRLILSRKELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGA 214

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           F+  LG + G    S+    +    +    VGQ V+  +L V++E GRI+LS+KQ+    
Sbjct: 215 FID-LGGVDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEP 273

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            +         + E++A                    G V+EG V     FG  V  E  
Sbjct: 274 WEQ--------VPEQVAE-------------------GDVLEGTVKRLTSFGAFV--EVL 304

Query: 898 SDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V G      I+H  +A     + SG  +Q  +L V  A+  + LS+K +   + + A 
Sbjct: 305 PGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSIKAL---QEKPAV 361

Query: 951 SNRQAQKKKRKR 962
             ++A  KK ++
Sbjct: 362 EKKEAAPKKEEK 373



 Score = 47.0 bits (110), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 158/364 (43%), Gaps = 29/364 (7%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKP 539
           +A+  E  + +  +VK G VVKG+V+ +D S   IV     GV+ + P+  +S     K 
Sbjct: 5   EANLLEEALNSVKEVKVGDVVKGEVLTIDESNQVIVGIENTGVEGVVPVRELS-VNADKV 63

Query: 540 GKKFKVGAELVFRVLG-VKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWIT 594
              +K G  L   V+  + S +   ++   L + +L     + E  D+          +T
Sbjct: 64  ADTYKAGDMLDLVVIARIGSDKEGGSY--LLSQRRLEARRVWNEIEDKFKAGETIKAPVT 121

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++ K G  V    GV+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS 
Sbjct: 122 QVVKGGLVVD--AGVRGFVPASMVS-DHFVEDLNQFK-GQELELKIVEIEPSDNRLILSR 177

Query: 655 --MMKPTRVSEDDLV--KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             +++  R ++   V  KL  G +V G V  +T     + +   G   G +    ++   
Sbjct: 178 KELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDL---GGVDGLVHVSEIS--Y 232

Query: 709 EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 767
           E        +K G E   ++L +D E   + LS K +L    +Q+P     +    V+ G
Sbjct: 233 ERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVP---EQVAEGDVLEG 289

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            V  +   G FV  L  + G    S+      A  ++    G+ V+  +L V++   R+ 
Sbjct: 290 TVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLA 349

Query: 828 LSLK 831
           LS+K
Sbjct: 350 LSIK 353



 Score = 44.7 bits (104), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L    +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +
Sbjct: 193  MEKLVAGDVVEGKVARLTNFGAFIDLG-GVDGLVHVSEISYERVNKPADALKVGQEVKVK 251

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            VLSV+    R+ +++K +      Q        +  GD++ G +KR+ S+G F+ +
Sbjct: 252  VLSVDAEKGRISLSIKQTLPEPWEQVP----EQVAEGDVLEGTVKRLTSFGAFVEV 303



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 13/201 (6%)

Query: 365 NDYNQHK--KVNARILFVDPTSRAVGLTLNPYLLHNR-----APPSHVKVGDIYDQSKVV 417
            D NQ K  ++  +I+ ++P+   + L+    +   R     A    +  GD+  + KV 
Sbjct: 149 EDLNQFKGQELELKIVEIEPSDNRLILSRKELVQAEREAKRQAVMEKLVAGDVV-EGKVA 207

Query: 418 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
           R+    G  +D+          V +S+++ E V K     K G  V+V++L     +G  
Sbjct: 208 RL-TNFGAFIDLGGVD----GLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRI 262

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
           +  +K +  E        V  G V++G V  + SFGA V+   GV+ L  +  +S   I 
Sbjct: 263 SLSIKQTLPEPWEQVPEQVAEGDVLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIA 322

Query: 538 KPGKKFKVGAELVFRVLGVKS 558
            P +    G ++  +VL V +
Sbjct: 323 TPNEVLTSGEKVQVKVLSVDA 343


>gi|350273580|ref|YP_004884893.1| 30S ribosomal protein S1 [Rickettsia japonica YH]
 gi|348592793|dbj|BAK96754.1| 30S ribosomal protein S1 [Rickettsia japonica YH]
          Length = 568

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 151/362 (41%), Gaps = 22/362 (6%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359

Query: 656 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
               +  E+ L+K      +G+++   +  +T   +  +V       G I    ++   +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDK 414

Query: 710 HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
              ++KS  K      ++L ++ E   + L  K    N  Q++   +      ++V   +
Sbjct: 415 GTDLLKSYKKGDKIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALI 471

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             + + G  V    ++TGF  R++  D +     + + + + + + ++ +   TGRI LS
Sbjct: 472 TEVKDEGLEVLLNNKVTGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSLEKSTGRILLS 531

Query: 830 LK 831
           +K
Sbjct: 532 VK 533



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 132/602 (21%), Positives = 244/602 (40%), Gaps = 103/602 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDIIIVDV--GLKNEGRIPKSEFLALPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +         + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKQMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                 +K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------IKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + +   
Sbjct: 400  MD--GMIHEGDISWEDKGTDLLKSYKKGDKIECKVLAINIEKEQVSLGIKQLSPNPY--- 454

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                        +E S +      V A++  VK+  L + L   N   G+   ++ + +K
Sbjct: 455  ------------QEISDEYKKGTIVKALITEVKDEGLEVLL--NNKVTGFIKRTELSDEK 500

Query: 1010 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 1065
              QK   F   + + A V++L  S+  GR+LL +KA  I+E + +  +     ++ ++G 
Sbjct: 501  DEQKPEMFQIDKEIEAKVVSLEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558

Query: 1066 LV 1067
            ++
Sbjct: 559  IL 560



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +  +   M+++G VKN+T  G FI L   +D  + L+++S G V  P +     + V 
Sbjct: 197  EMLSKIKEGMVLEGTVKNITDYGAFIDLG-SVDGLLHLTDISWGRVNHPSEVLEFNQKVK 255

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              V+  +  +KR+ + +K  DS      +        VG  + G++     YG+FI +++
Sbjct: 256  VMVIKFDEKTKRISLGIKQLDSNPWEAIK----EEFPVGKQMTGKVTNFADYGVFIELKD 311



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 122/287 (42%), Gaps = 41/287 (14%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
            ++ EK  + L ++  Q+   +  +  + +N       G I+   I  I     G+ V +G
Sbjct: 348  VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PVGTIIKAPIRNITDF--GIFVALG 397

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
             ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V L
Sbjct: 398  NNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDKIECKVLAINIEKE---QVSL 444

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             ++                   +P  + E  ++     IV+  +  V  +G  ++L+ K+
Sbjct: 445  GIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLNNKV 487

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
               +  + LSD   E   + F I K +  +V+S+E  + R+ +++K 
Sbjct: 488  TGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSLEKSTGRILLSVKA 534


>gi|449937785|ref|ZP_21804739.1| 30S ribosomal protein S1 [Streptococcus mutans 2ST1]
 gi|450075806|ref|ZP_21849453.1| 30S ribosomal protein S1 [Streptococcus mutans N3209]
 gi|450155540|ref|ZP_21878289.1| 30S ribosomal protein S1 [Streptococcus mutans 21]
 gi|449163925|gb|EMB67013.1| 30S ribosomal protein S1 [Streptococcus mutans 2ST1]
 gi|449213575|gb|EMC13906.1| 30S ribosomal protein S1 [Streptococcus mutans N3209]
 gi|449237103|gb|EMC35990.1| 30S ribosomal protein S1 [Streptococcus mutans 21]
          Length = 399

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 155/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFE------IVK 538
           FE L+ + S+V PG VV  +V+ VD   A +   G GV+A+  L  ++          VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINAFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         D +   G  T+  
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGDVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA------SRRIN 651
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    P+      SRR  
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQQFEAKIKEIDPSENRFILSRRDV 175

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           +       R      + +G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEAAAAKAREEVFSRLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHITELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SRLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHITELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +  +R  +  SN   RQ++ +++KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALE-ERPAQDESNGEKRQSRPRRQKRQDKRDYELPET 384



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D+
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQDE 358



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHITELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTASQSEIN 1461
             +RV +++K  + R A Q E N
Sbjct: 340  DERVSLSIKALEERPA-QDESN 360



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 298


>gi|161610761|ref|NP_879751.2| 30S ribosomal protein S1 [Bordetella pertussis Tohama I]
 gi|384203409|ref|YP_005589148.1| 30S ribosomal protein S1 [Bordetella pertussis CS]
 gi|332381523|gb|AEE66370.1| 30S ribosomal protein S1 [Bordetella pertussis CS]
          Length = 571

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 153/356 (42%), Gaps = 36/356 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 202 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 260

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 261 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 317

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 318 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 375

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     +  ++V   K G E + +++
Sbjct: 376 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVL 430

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVRFL 782
            +D E   + L  K        QL  D      A+H    +VV G + ++   G  +   
Sbjct: 431 GIDTEKERISLGIK--------QLEGDPFNNFVATH-DKGAVVPGTIKSVEPKGAVITLS 481

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
             + G+   S+   G+  D +     G+++ + I++++ +   I LS+K    + T
Sbjct: 482 VDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAET 537



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 14/168 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAEL 549
           ++ K G  V+G + ++  FG  V  PGG+  L    H+S+    + G    + FK G EL
Sbjct: 369 TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLV---HLSDLSWTESGEEAVRNFKKGDEL 425

Query: 550 VFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFY 606
              VLG+ +  +RI++  K+     +    +++    D+  +  G I  +E  G  +   
Sbjct: 426 EAVVLGIDTEKERISLGIKQL----EGDPFNNFVATHDKGAVVPGTIKSVEPKGAVITLS 481

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             V+G+   SE+      + +++   G+ ++  I++    +R I LS 
Sbjct: 482 VDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSI 529



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 134/333 (40%), Gaps = 62/333 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 202  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 254

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 255  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 304

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 305  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 350

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 351  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 394

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + ES E   + F  G  +   VL ++   +R+ + +K  +     
Sbjct: 395  GGIDGLVHLSDLS--WTESGEEAVRNFKKGDELEAVVLGIDTEKERISLGIKQLEG---- 448

Query: 1457 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1488
                NN    H  G +V G IK VE  G  IT+
Sbjct: 449  -DPFNNFVATHDKGAVVPGTIKSVEPKGAVITL 480



 Score = 41.6 bits (96), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 162/411 (39%), Gaps = 68/411 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 163  EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 220

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ         
Sbjct: 221  LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ--------- 271

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    L      G+ L             GKV    D+G  V  E   +  
Sbjct: 272  ------LGEDPWVGLARRYPQGTRLF------------GKVTNLTDYGAFVEVEAGIEGL 313

Query: 902  GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN-RQ 954
              ++        V+       G  ++  +L++ +  R + L +K    + + E  +N ++
Sbjct: 314  VHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKR 373

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQ-- 1012
              K +   ++  D GV                 + LP      G   +SD +  +  +  
Sbjct: 374  GDKVRGAIKSITDFGVF----------------VGLP--GGIDGLVHLSDLSWTESGEEA 415

Query: 1013 -KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             + F  G  + A V+ + +     R+ L +K +     ++       +++D G++V   I
Sbjct: 416  VRNFKKGDELEAVVLGIDTEKE--RISLGIKQLEGDPFNNF-----VATHDKGAVVPGTI 468

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
              ++P    +   +   G +  +E++   S  VE+  +  K G+ + A I+
Sbjct: 469  KSVEPKGAVITLSVDVEGYLRASEIS---SGRVEDATTVLKAGENIEAMIV 516


>gi|440509953|ref|YP_007347389.1| 30S ribosomal protein S1 [Candidatus Blochmannia chromaiodes str.
           640]
 gi|440454166|gb|AGC03658.1| 30S ribosomal protein S1 [Candidatus Blochmannia chromaiodes str.
           640]
          Length = 564

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 149/357 (41%), Gaps = 38/357 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G+ ++G V  +  +GA +   GGV  L  +  M+   +  P     VG E++ +VL    
Sbjct: 192 GIEIRGVVKNLTDYGAFIDL-GGVDGLLHITDMAWKRVKHPSDIVNVGDEIIVKVLRFDR 250

Query: 559 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +RI V+   K L +   A +    +   +LI  G +T +  +GCF+   +GV+G    SE
Sbjct: 251 ERIRVSLGLKQLGEDPWAAIVQRHKEGSKLI--GQVTNLTDYGCFIEIEDGVEGLVHVSE 308

Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----DDLVKLGSL 672
           +   +    PS +  VG+ V+  ++      RRI+L   +K  +++      D+   G  
Sbjct: 309 MDWTNKNIHPSKVVTVGESVEVMVLDIDKERRRISLG--LKQCKINPWQKFSDMYNRGDR 366

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLV 729
           V G +  +T   + +     G   G     HL+D   +L +   +    K       +L 
Sbjct: 367 VMGRIKSITDFGIFI-----GLEGGIDGLVHLSDISWYLSNEEAVNKYKKGDEIIAVVLQ 421

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIH-----PNSVVHGYVCNIIETGCFVRFL-- 782
           +D E   + L  K        QL  D  +++       S+V G + +I E G     L  
Sbjct: 422 VDAERERISLGIK--------QLTEDPLNVYLSAHKKGSIVSGKILSIDEKGGVTVILDD 473

Query: 783 GRLTGFAPRSKAVDGQRADLSKTY---YVGQSVRSNILDVNSETGRITLSLKQSCCS 836
             + G+     AV   ++   KTY   ++G  + + +  V+ +   + LS    C S
Sbjct: 474 NMVIGYLS-IPAVSNNKSTHKKTYISLHIGNDILATLDGVDRKNRIVNLSACNICDS 529



 Score = 41.6 bits (96), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 13/111 (11%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-SPEKEFPIGKLVAGRVLSVEPLSKR 1442
            G V N+T  GCFI +   ++  V +S +        P K   +G+ V   VL ++   +R
Sbjct: 282  GQVTNLTDYGCFIEIEDGVEGLVHVSEMDWTNKNIHPSKVVTVGESVEVMVLDIDKERRR 341

Query: 1443 VEVTLKTSDSRTASQSEIN---NLSNLH-VGDIVIGQIKRVESYGLFITIE 1489
            + + LK        Q +IN     S+++  GD V+G+IK +  +G+FI +E
Sbjct: 342  ISLGLK--------QCKINPWQKFSDMYNRGDRVMGRIKSITDFGIFIGLE 384


>gi|222824189|ref|YP_002575763.1| 30S ribosomal protein S1 [Campylobacter lari RM2100]
 gi|222539411|gb|ACM64512.1| 30S ribosomal protein S1 [Campylobacter lari RM2100]
          Length = 517

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 109/489 (22%), Positives = 193/489 (39%), Gaps = 73/489 (14%)

Query: 457 YKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           +KEG  + V I+G R    L +    L+    +  +  + D +    VK  +I  +  G 
Sbjct: 75  FKEGDTLEVAIVGSRGGRSLLSHKKALRKQKVKEFIDNYKDDESMFDVK--IIGKNRGGF 132

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-------SKRITVTHKK 567
           +     GV+   P    S          FK    ++ +   VK       ++ I V+ KK
Sbjct: 133 VAVDENGVEFFLPKSQSS----------FKDSNNIINKTFKVKIIKIDKEAQSIVVSRKK 182

Query: 568 TL---VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
            +    K +  I+S+     +  I  G + KI  +G FV    GV G    SE+      
Sbjct: 183 IVDEERKKRKEIISNVLNQEE--IIEGIVKKITTYGMFVDV-GGVDGLVHYSEISYKGPV 239

Query: 625 EPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVT 681
            PSS+Y+ G  V  +++      + ++LS    M  P    +D L ++G  +   V  + 
Sbjct: 240 NPSSLYNEGDKVPVKVIKYDKDKKHLSLSIKLAMPDPWDEIKDGL-EVGDTIKVTVSNIE 298

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLS 740
           P     +V      +G +    ++   ++A   K  I  G E D +++ ++ +   L +S
Sbjct: 299 PYGA--FVDLGNDIEGFLHISEIS-WDKNAKNPKDYISEGQELDVEVIEINAKERRLRVS 355

Query: 741 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
            K  L     +     SH     VV G V ++   G FV+ +  L G      A   +  
Sbjct: 356 LKNLLAKPFDEFLK--SH-KVGDVVKGSVTSVTNFGAFVK-IANLEGLLHNEDASWNRND 411

Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
                Y VG  +   I+ ++ E  +I+LS K+                L++    + + K
Sbjct: 412 KCKDMYKVGDVIEVKIIKLDKENQKISLSTKE----------------LQKSPVQVYAQK 455

Query: 861 HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG----ATVES 916
           H            +  +I GK+ +  DFGV V  EE  D    + H +  G    ++++ 
Sbjct: 456 HQ-----------VNDIISGKIRDIKDFGVFVELEEGVDA---LIHKEDLGNVDFSSLKV 501

Query: 917 GSVIQAAIL 925
           G +I+A I+
Sbjct: 502 GDIIEALIV 510



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 124/280 (44%), Gaps = 43/280 (15%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            I K     ++ I+KE + + +  +   D    K  +I    +   +++ +I+ G + KI 
Sbjct: 158  INKTFKVKIIKIDKEAQSIVVSRKKIVDEERKKRKEI----ISNVLNQEEIIEGIVKKIT 213

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331
            +   G+ V +G  + G VH++E+           Y +G  +P S Y+EG  V  KV++  
Sbjct: 214  TY--GMFVDVGG-VDGLVHYSEI----------SY-KGPVNPSSLYNEGDKVPVKVIKYD 259

Query: 1332 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1391
            +  +   H+ LS++ ++                 P    E  + L     ++  V N+  
Sbjct: 260  KDKK---HLSLSIKLAM-----------------PDPWDEIKDGLEVGDTIKVTVSNIEP 299

Query: 1392 KGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450
             G F+ L   ++  + +S +S D   ++P+     G+ +   V+ +    +R+ V+LK  
Sbjct: 300  YGAFVDLGNDIEGFLHISEISWDKNAKNPKDYISEGQELDVEVIEINAKERRLRVSLKNL 359

Query: 1451 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
             ++   +     L +  VGD+V G +  V ++G F+ I N
Sbjct: 360  LAKPFDEF----LKSHKVGDVVKGSVTSVTNFGAFVKIAN 395


>gi|358052401|ref|ZP_09146284.1| 30S ribosomal protein S1 [Staphylococcus simiae CCM 7213]
 gi|357258096|gb|EHJ08270.1| 30S ribosomal protein S1 [Staphylococcus simiae CCM 7213]
          Length = 391

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 142/353 (40%), Gaps = 24/353 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPNEVVKEGDEIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L + +L    SY     +L    I    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSRRQLETEKSYEYLQQKLDNDEIIEAAVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVS 662
            +GF P S +  D   E  S++  GQ ++ ++    PA+ R+ LS         +  +  
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRLKVEELDPANNRVILSRKAVEQIENEAKKAE 186

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
             D +  G ++ G V  +T     + +   G   G +    L+   EH    + V+  G 
Sbjct: 187 LLDSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVKSPEEVVSVGQ 241

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           E   ++  +D ++  + LS K +L      +       H + V+ G V  +   G FV  
Sbjct: 242 EVKVKIKSIDKDTERVSLSIKDTLPTPFDNI---KGQFHEDDVIEGVVVRLANFGAFVEI 298

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
              + G    S+         S+    GQ V   IL ++ E  R++LS+K + 
Sbjct: 299 APGVQGLVHISEIAHKHIGAPSEVLEPGQQVSVKILGIDEENERVSLSIKATL 351



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 1363 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1422
            ++   K  E ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V+SPE+ 
Sbjct: 178  IENEAKKAELLDSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVKSPEEV 236

Query: 1423 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1482
              +G+ V  ++ S++  ++RV +++K     T      N     H  D++ G + R+ ++
Sbjct: 237  VSVGQEVKVKIKSIDKDTERVSLSIKD----TLPTPFDNIKGQFHEDDVIEGVVVRLANF 292

Query: 1483 GLFITI 1488
            G F+ I
Sbjct: 293  GAFVEI 298



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 160/383 (41%), Gaps = 87/383 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPNEVVKEGDEIEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKIEFDEENDSGAYILSRRQLETEKSYEYLQQKLDNDEIIEAAVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST             F+  F+    +F  Q                 +  ++ 
Sbjct: 132 FVPASLIST------------DFIEDFS----VFDGQT----------------IRLKVE 159

Query: 379 FVDPTSRAVGLTLNPY-LLHNRAPPSHV----KVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
            +DP +  V L+      + N A  + +      GD+ D  KV R+ +  G  +DI    
Sbjct: 160 ELDPANNRVILSRKAVEQIENEAKKAELLDSLNEGDVID-GKVARLTQ-FGAFIDIGGVD 217

Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL- 489
                 V +S+++ E V+  E+    G  V+V+I    +  E ++  I     + F+ + 
Sbjct: 218 ----GLVHVSELSHEHVKSPEEVVSVGQEVKVKIKSIDKDTERVSLSIKDTLPTPFDNIK 273

Query: 490 -VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
             F   DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  P +  + G +
Sbjct: 274 GQFHEDDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGAPSEVLEPGQQ 328

Query: 549 LVFRVLGV--KSKRITVTHKKTL 569
           +  ++LG+  +++R++++ K TL
Sbjct: 329 VSVKILGIDEENERVSLSIKATL 351


>gi|343504831|ref|ZP_08742505.1| 30S ribosomal protein S1 [Vibrio ichthyoenteri ATCC 700023]
 gi|342810447|gb|EGU45530.1| 30S ribosomal protein S1 [Vibrio ichthyoenteri ATCC 700023]
          Length = 556

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 144/351 (41%), Gaps = 32/351 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E++ +VL
Sbjct: 188 NLQEGAEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      +AI   Y E        G +T +  +GCFV    GV+G 
Sbjct: 247 KFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHK---LSGRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
              SE+   +    PS + +VG  V+  ++      RRI+L        P +   +   K
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAK 363

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  V+G +  +T   + +     G   G     HL+D   +    ++V   K G E   
Sbjct: 364 -GDKVTGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEISA 417

Query: 727 L-LVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-----PNSVVHGYVCNIIETGCFVR 780
           + L +D E   + L  K        Q+ +D  + +        +V+G V  +   G  + 
Sbjct: 418 VVLAVDAERERISLGVK--------QMENDPFNAYVAEKKKGVLVNGTVTAVDAKGATIE 469

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G+   S+    +  D S    VG+SV +    V+ +   I LS+K
Sbjct: 470 LEEGVEGYIRVSEIARDRVEDASLILSVGESVEAKFTGVDRKNRVINLSIK 520



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 182/440 (41%), Gaps = 77/440 (17%)

Query: 254 LPSFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
           L     FLP       S +DV+P           L+  V  +D+ R  V +S       +
Sbjct: 124 LNGIRAFLP------GSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSR------R 171

Query: 306 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN--W 363
            V +    +  D L+  +     V+ I++N      LT +   VD+  +      T+  W
Sbjct: 172 AVIESENSVERDELLENLQEGAEVKGIVKN------LTDYGAFVDLGGVDGLLHITDMAW 225

Query: 364 KNDYNQHKKVNA------RILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVG 408
           K   +  + VN       ++L  D     V L L     +P++ +  R P  H    +V 
Sbjct: 226 KRVKHPSEIVNVGDEILVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVT 285

Query: 409 DIYDQSKVVRVDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
           ++ D    V ++ G+ GL+    +D  +  +     V + D  E  V +++++       
Sbjct: 286 NLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEE------- 338

Query: 464 RVRI-LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
           R RI LG +          KA+ ++   F  +  K G  V GK+ ++  FG  +   GG+
Sbjct: 339 RRRISLGLKQC--------KANPWQS--FAEAQAK-GDKVTGKIKSITDFGIFIGLDGGI 387

Query: 523 KALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILS 578
             L    H+S+      G    +++K G E+   VL V ++R  ++     +++     +
Sbjct: 388 DGLV---HLSDISWNVAGEEAVREYKKGDEISAVVLAVDAERERISLGVKQMENDP--FN 442

Query: 579 SY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
           +Y AE    ++ +G +T ++  G  +    GV+G+   SE+  D   + S +  VG+ V+
Sbjct: 443 AYVAEKKKGVLVNGTVTAVDAKGATIELEEGVEGYIRVSEIARDRVEDASLILSVGESVE 502

Query: 638 CRIMSSIPASRRINLSFMMK 657
            +       +R INLS   K
Sbjct: 503 AKFTGVDRKNRVINLSIKAK 522



 Score = 43.5 bits (101), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 136/354 (38%), Gaps = 49/354 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA------ENSGIDVKPGLLL 280
           LE +QEG  +   VK++ D+G  +  G     G L   ++A       +  ++V   +L+
Sbjct: 186 LENLQEGAEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEILV 243

Query: 281 QGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILE 334
           +  V   DR R  V      L  DP             ++I    P G  +S RV ++ +
Sbjct: 244 K--VLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGHKLSGRVTNLTD 289

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL--- 391
            G  +       G V +  +  T    +     N   +V   +L +D   R + L L   
Sbjct: 290 YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQC 349

Query: 392 --NPY--LLHNRAPPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
             NP+      +A    V  K+  I D    + +D G+  L+ +              +V
Sbjct: 350 KANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNV 400

Query: 446 AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK 505
           A EE  +  KK  E S V + +   R    L    ++   F   V   ++ K G++V G 
Sbjct: 401 AGEEAVREYKKGDEISAVVLAVDAERERISLGVKQMENDPFNAYV---AEKKKGVLVNGT 457

Query: 506 VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           V AVD+ GA ++   GV+    +  ++   +        VG  +  +  GV  K
Sbjct: 458 VTAVDAKGATIELEEGVEGYIRVSEIARDRVEDASLILSVGESVEAKFTGVDRK 511



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 164/387 (42%), Gaps = 58/387 (14%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           A  FE      ++ + G +VKG V+A+++    V    G+K+   +P   +F+      +
Sbjct: 6   AQLFEEF-LNETEFQQGSIVKGTVVAIEN--GFVLVDAGLKSESAIP-AEQFKNAAGELE 61

Query: 543 FKVGAELVFRVLGVK--------SKRITVTHKKTLVKSKLAILSSYAEATDRL-ITHGWI 593
             VG E+   +  V+        S+     H+  +V  K     +Y EA   + I +G +
Sbjct: 62  VAVGDEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEK-----AYEEAETVVGIINGKV 116

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRR 649
                 G F    NG++ F P S + + P  + + + +     +V+K  +  +++  SRR
Sbjct: 117 -----KGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR 171

Query: 650 INLSFMMKPTRVSEDDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA- 705
              + +     V  D+L   ++ G+ V G+V  +T     V +   G   G +    +A 
Sbjct: 172 ---AVIESENSVERDELLENLQEGAEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAW 225

Query: 706 DHLEHATVMKSVIKPGYE-FDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHI 759
             ++H +    ++  G E   ++L  D E + + L  K        QL  D     A   
Sbjct: 226 KRVKHPS---EIVNVGDEILVKVLKFDRERTRVSLGLK--------QLGEDPWVAIAKRY 274

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNIL 817
                + G V N+ + GCFV     + G    S+ +D    ++  SK   VG  V   +L
Sbjct: 275 PEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQ 844
           +++ E  RI+L LKQ C ++   SF +
Sbjct: 334 EIDEERRRISLGLKQ-CKANPWQSFAE 359


>gi|418327907|ref|ZP_12939039.1| 30S ribosomal protein S1 [Staphylococcus epidermidis 14.1.R1.SE]
 gi|365232466|gb|EHM73462.1| 30S ribosomal protein S1 [Staphylococcus epidermidis 14.1.R1.SE]
          Length = 392

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 152/375 (40%), Gaps = 38/375 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQKVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 721 GYEFDQLLV----LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
           G   + ++V    ++ +S  + LS K +L    + +       H + V+ G V  +   G
Sbjct: 240 G---EAVIVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFG 293

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            FV     + G    S+         ++    GQ V   IL ++ +  RI+LS+K +   
Sbjct: 294 AFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPK 353

Query: 837 ----STDASFMQEHF 847
                +DAS  Q + 
Sbjct: 354 ENVIESDASTTQSYL 368



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG  ++ +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSF 654
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 47.0 bits (110), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T+ G FI +   +D  V +S LS  +V++PE+   +G+ V  +
Sbjct: 188  LDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSVGEAVIVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  S+R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  VKSVEKDSERISLSIKD----TLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEI 298



 Score = 43.9 bits (102), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 111/289 (38%), Gaps = 55/289 (19%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQKVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            DA          +K ++L S                G VI+GKV    +FG  +     
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI--- 213

Query: 898 SDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             V G +        H Q     V  G  +   +  V K    + LS+K
Sbjct: 214 GGVDGLVHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIK 262


>gi|294935871|ref|XP_002781547.1| programmed cell death protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239892353|gb|EER13342.1| programmed cell death protein, putative [Perkinsus marinus ATCC
           50983]
          Length = 1106

 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 140/590 (23%), Positives = 238/590 (40%), Gaps = 84/590 (14%)

Query: 360 TTNWKNDYNQHKKVNARILFV--DPTS--RAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK 415
           TTN K      + V AR+L +  DP+S  RAV LTL P L+  +   S V+ G   + ++
Sbjct: 26  TTNLKVG----QSVTARVLAILADPSSHTRAVYLTLLPNLVQWKGIKSQVEAGTTIEAAR 81

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE----GSCVRVRILGFR 471
           V+ V             P     +V   ++      +    Y++    G    VR LG  
Sbjct: 82  VIDV------------IPKDCTRFVAGGNLMVAHATRCSLPYRQPGAVGKKTDVRALGSN 129

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA--VDSFGAIVQFPGGVKALCPLP 529
            LE       +       V     V  GMV    VI    +  G IV     V    P  
Sbjct: 130 LLEMSVQVSAEEKVLAASVVNLQQVSAGMVFDKAVIEHFDNEKGLIVSLSDFVTGRVPKE 189

Query: 530 HMSEFEIVK--PGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV----KSKLAILSSYA 581
             ++    +  P +  +  AE+  RVL V   R  +T+T KK+LV    +     L   A
Sbjct: 190 QCTDQGNQRKLPKRYAEEKAEIRVRVLNVDPVRRQVTLTAKKSLVGRPDEEAPRALIRNA 249

Query: 582 EATDRLITHGWITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
           +A+   +  G+++KI  H GC V+F+    G  P     +  GC      H G +VK R+
Sbjct: 250 DASVGDVVVGYVSKILDHGGCIVKFFGEAFGLLPI----VTEGC-----AHEGALVKVRV 300

Query: 641 MS--SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS----GVVDVVTPNAVVVYVIAKGY 694
           +S    P   R+ L  +      +  ++ K+G +++       D  +     V +   G 
Sbjct: 301 VSKNDSPKGTRLRLQQVNSMEDSTMGEITKVGDVLAVETIEGADKCSGGRQCVKIRCVGG 360

Query: 695 SKGTIPTEHLADHLEHA-TVMKSVIKPG----YEFDQLLV--LDNESS-------NLLLS 740
               +P   LAD  + A  VM+ V K      +   ++LV  + N+ +        L+  
Sbjct: 361 MDVLVPVMQLADDPDMAVAVMERVEKKEDLQHFPLAKVLVTAVMNDGTVEGTCKPVLVED 420

Query: 741 AKYS--LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            KY   L  S +++P   S I     + G+V N+   G FVR +G +TG  P+ K  +G 
Sbjct: 421 EKYRELLGISQEEIP---SKIKVGEGLVGFVSNVTTFGAFVR-VGGVTGLVPKPKLAEGF 476

Query: 799 RADLSKTYYVGQSVRSNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
             ++S+   VGQ+V + ++  V++E     + ++    ++      +E      K+ +  
Sbjct: 477 VEEVSEAVEVGQTVTTAVVSSVDAERNMFKMDMQPRAVAAVSELSAREELRAAAKLRL-- 534

Query: 858 SSKHNGSELKWVEGFII---GSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
                    KW+    I   G V++ KV +   +G ++   +     G +
Sbjct: 535 --------EKWLGSGRIPQRGQVVDAKVGKKKPYGWMLELTKFEAAAGLL 576


>gi|341583922|ref|YP_004764413.1| 30S ribosomal protein S1 [Rickettsia heilongjiangensis 054]
 gi|340808148|gb|AEK74736.1| 30S ribosomal protein S1 [Rickettsia heilongjiangensis 054]
          Length = 568

 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 152/360 (42%), Gaps = 18/360 (5%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360

Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                P T+ +E++ V  G+++   +  +T   +  +V       G I    ++   +  
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416

Query: 712 TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
            ++KS  K      ++L ++ E   + L  K    N  Q++   +      ++V   +  
Sbjct: 417 DLLKSYKKGDKIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALITE 473

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + + G  V    ++TGF  R++  D +     + + + + + + ++ +   TGRI LS+K
Sbjct: 474 VKDEGLEVLLNNKVTGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSVK 533



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 130/602 (21%), Positives = 243/602 (40%), Gaps = 103/602 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V    + ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDIIIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +         + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKQMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                  K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + +   
Sbjct: 400  MD--GMIHEGDISWEDKGTDLLKSYKKGDKIECKVLAINIEKEQVSLGIKQLSPNPY--- 454

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                        +E S +      V A++  VK+  L + L   N   G+   ++ + +K
Sbjct: 455  ------------QEISDEYKKGTIVKALITEVKDEGLEVLL--NNKVTGFIKRTELSDEK 500

Query: 1010 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 1065
              QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G 
Sbjct: 501  DEQKPEMFQIDKEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558

Query: 1066 LV 1067
            ++
Sbjct: 559  IL 560



 Score = 44.7 bits (104), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
            ++ EK  + L ++  Q+            N  T   E + VG  I   +  +   G+ V 
Sbjct: 348  VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V
Sbjct: 396  LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDKIECKVLAINIEKE---QV 442

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             L ++                   +P  + E  ++     IV+  +  V  +G  ++L+ 
Sbjct: 443  SLGIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLNN 485

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            K+   +  + LSD   E   + F I K +  +V+S+E  + R+ +++K 
Sbjct: 486  KVTGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSVKA 534


>gi|359798458|ref|ZP_09301029.1| 30S ribosomal protein S1 [Achromobacter arsenitoxydans SY8]
 gi|359363280|gb|EHK65006.1| 30S ribosomal protein S1 [Achromobacter arsenitoxydans SY8]
          Length = 570

 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 149/355 (41%), Gaps = 34/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 201 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 259

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 260 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 316

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 317 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 374

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D    E         K G E + +++
Sbjct: 375 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTEAGEEAVRNFKKGDEIEAVVL 429

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D +   + L  K        QL  D      +     +VV G + ++   G  V    
Sbjct: 430 GIDTDKERISLGIK--------QLEGDPFNNFVATFDKGAVVPGTIKSVEAKGAVVTLSV 481

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + G+   S+   G+  D +     G+++ + I++++ +T  I LS+K    + T
Sbjct: 482 DVEGYLRASEISSGRVEDATTVLTAGENIEAMIVNIDRKTRSIQLSIKARDNAET 536



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 137/320 (42%), Gaps = 45/320 (14%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V A++L  D     V L +     +P++   R  P       KV ++ D    V V+ 
Sbjct: 248 QEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEA 307

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ +  E  V ++++        R RI LG +    
Sbjct: 308 GIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDED-------RRRISLGMKQC-- 358

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + + +E      ++ K G  V+G + ++  FG  V  PGG+  L    H+S+  
Sbjct: 359 ------RQNPWEEFA---TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLV---HLSDLS 406

Query: 536 IVKPG----KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
             + G    + FK G E+   VLG+ +  +RI++  K+         ++++ +     + 
Sbjct: 407 WTEAGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFNNFVATFDKGA---VV 463

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G I  +E  G  V     V+G+   SE+      + +++   G+ ++  I++    +R 
Sbjct: 464 PGTIKSVEAKGAVVTLSVDVEGYLRASEISSGRVEDATTVLTAGENIEAMIVNIDRKTRS 523

Query: 650 INLSFMMKPTRVSEDDLVKL 669
           I LS   +    + D + ++
Sbjct: 524 IQLSIKARDNAETADTIQRM 543



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 162 EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 219

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ
Sbjct: 220 LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ 270



 Score = 41.2 bits (95), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 60/332 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 201  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 253

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 254  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 303

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 304  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 349

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 350  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 393

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + E+ E   + F  G  +   VL ++   +R+ + +K  +    +
Sbjct: 394  GGIDGLVHLSDLS--WTEAGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFN 451

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                N ++    G +V G IK VE+ G  +T+
Sbjct: 452  ----NFVATFDKGAVVPGTIKSVEAKGAVVTL 479


>gi|395792585|ref|ZP_10472009.1| 30S ribosomal protein S1 [Bartonella vinsonii subsp. arupensis
            Pm136co]
 gi|423713246|ref|ZP_17687506.1| 30S ribosomal protein S1 [Bartonella vinsonii subsp. arupensis
            OK-94-513]
 gi|395423287|gb|EJF89482.1| 30S ribosomal protein S1 [Bartonella vinsonii subsp. arupensis
            OK-94-513]
 gi|395432142|gb|EJF98131.1| 30S ribosomal protein S1 [Bartonella vinsonii subsp. arupensis
            Pm136co]
          Length = 566

 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 142/620 (22%), Positives = 241/620 (38%), Gaps = 108/620 (17%)

Query: 486  FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            FE L+   F  +D+  G VVKG+VIA++   AI+    G+K    +P + EF     G K
Sbjct: 11   FEALLTESFQTNDLNEGSVVKGRVIAIEKDMAIID--AGLKVEGRIP-LKEF-----GAK 62

Query: 543  FKVGAELVFRVLGVKSKRI-TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI---EK 598
             K G+  V   + V  +RI     +  L + K     S+    ++      +  +   + 
Sbjct: 63   GKDGSLQVGDEVEVYIERIENAMGEAVLSREKARREESWIRLEEKFNAGARVDGVIFSQV 122

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSF 654
             G F    +G   F PRS++ + P  + S + H  Q  +     R   +I  SRR  L  
Sbjct: 123  KGGFTVDLDGAVAFLPRSQVDIRPIRDVSPLMHNSQSFEILKMDRRRGNIVVSRRTVLEE 182

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEH 710
                 R      ++   +V GVV  +T     V +   G   G +    +A    +H   
Sbjct: 183  SRAEQRSEIVQNLEENQIVEGVVKNITDYGAFVDL---GGIDGLLHVTDMAWRRVNHPSE 239

Query: 711  ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVV 765
               +   IK      Q++ ++ ++  + L  K        QL SD     S  +P    +
Sbjct: 240  VLTIGQTIKV-----QIIRINQDTHRISLGMK--------QLESDPWESISARYPVGKKI 286

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
             G V NI + G FV     + G    S+ +   +     K     Q V   +L+++    
Sbjct: 287  TGAVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNVHPGKLLSTSQEVEVVVLEIDPSKR 346

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV---EGFIIGSVIEGK 881
            RI+L LKQ+                               E  WV     F + S IEG+
Sbjct: 347  RISLGLKQTF------------------------------ENPWVAFANKFPVNSQIEGE 376

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERL 933
            V    +FG+ +  E   DV G +    L           T   G +++A +LDV   +  
Sbjct: 377  VKNKTEFGLFIGLE--GDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDVDVEKER 434

Query: 934  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 993
            + L +K +  D+  EA              AS +L     V   V  V EN + + L ++
Sbjct: 435  ISLGIKQLSNDKVGEA-------------AASGELRKGAVVTCEVTAVNENDIGVKLIDH 481

Query: 994  N--HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETET 1049
            N   +I  A ++    ++ P++ F  GQ + A + A    +   +L + +KA  I+E + 
Sbjct: 482  NLETTIRRADLARDRDEQRPER-FSIGQRIDARITAFDKKTR--KLSVSIKALEIAEEKE 538

Query: 1050 SSSKRAKKKSSYDVGSLVQA 1069
            + ++     S   +G ++ A
Sbjct: 539  AVAQYGSTDSGASLGDILGA 558



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 158/410 (38%), Gaps = 68/410 (16%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           I +   E V   EK  +E S +R+        E    G    +  +G++F  S VK G  
Sbjct: 81  IENAMGEAVLSREKARREESWIRLE-------EKFNAG----ARVDGVIF--SQVKGGF- 126

Query: 502 VKGKVIAVDSFGAIVQFPGG------VKALCPLPHMSE-FEIVKPGKKFKVGAELVFRVL 554
                  VD  GA+   P        ++ + PL H S+ FEI+K  ++            
Sbjct: 127 ------TVDLDGAVAFLPRSQVDIRPIRDVSPLMHNSQSFEILKMDRR------------ 168

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
                 I V+ +  L +S+    S   +   +  I  G +  I  +G FV    G+ G  
Sbjct: 169 ---RGNIVVSRRTVLEESRAEQRSEIVQNLEENQIVEGVVKNITDYGAFVDL-GGIDGLL 224

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--LGS 671
             +++       PS +  +GQ +K +I+     + RI+L      +   E    +  +G 
Sbjct: 225 HVTDMAWRRVNHPSEVLTIGQTIKVQIIRINQDTHRISLGMKQLESDPWESISARYPVGK 284

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ----- 726
            ++G V  +T     V  I  G  +G I       H+   +  K  + PG          
Sbjct: 285 KITGAVTNITDYGGFVE-IEPGI-EGLI-------HVSEMSWTKKNVHPGKLLSTSQEVE 335

Query: 727 --LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D     + L  K +  N        A+    NS + G V N  E G F+   G 
Sbjct: 336 VVVLEIDPSKRRISLGLKQTFENPWVAF---ANKFPVNSQIEGEVKNKTEFGLFIGLEGD 392

Query: 785 LTGFAPRSKAVDGQR--ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           + G    S  +D  R    +  TY  G  V++ +LDV+ E  RI+L +KQ
Sbjct: 393 VDGMVHLSD-LDWNRPGEQVIDTYNKGDIVKAVVLDVDVEKERISLGIKQ 441



 Score = 45.1 bits (105), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 5/119 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L  N IV+G VKN+T  G F+ L   +D  + +++++   V  P +   IG+ + 
Sbjct: 190  EIVQNLEENQIVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEVLTIGQTIK 248

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +++ +   + R+ + +K  +S           +   VG  + G +  +  YG F+ IE
Sbjct: 249  VQIIRINQDTHRISLGMKQLESDPWESIS----ARYPVGKKITGAVTNITDYGGFVEIE 303


>gi|449995540|ref|ZP_21823021.1| 30S ribosomal protein S1 [Streptococcus mutans A9]
 gi|449184316|gb|EMB86266.1| 30S ribosomal protein S1 [Streptococcus mutans A9]
          Length = 399

 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 155/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V PG VV  +V+ VD   A +   G GV+A+  L  ++        + VK
Sbjct: 4   FEDLLNSVSEVNPGDVVTAEVLTVDGEQANLVIDGTGVEAVLTLRELTNDRNADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G K +V   LV R V+G  +  +T    K  ++++ A         D +   G  T   
Sbjct: 64  AGDKVEV---LVLRQVVGKDTDTVTFLVSKKRLEARKAWDKLVGREGDVVTVKG--THAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA------SRRIN 651
           K G  V F  G++GF P S +  D     ++   VGQ  + +I    P+      SRR  
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEKFVGQQFEAKIKEIDPSENRFILSRRDV 175

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           +       R      + +G +V+G V  +T     + +   G   G +    L+ H E  
Sbjct: 176 VEAAAAKAREEVFSRLAVGDIVTGTVARLTSFGAFIDL---GGVDGLVHITELS-H-ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E   ++L +D E+  + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGK 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN+   R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  +   G F+  LG + G    ++    +         VG+ ++  +
Sbjct: 189 SRLAVGDIVTGTVARLTSFGAFID-LGGVDGLVHITELSHERNVSPKSVVTVGEEIQVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           L ++ E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
           VIEGKV    DFG  V  E    + G +   Q++   VE+       G  +   +LDV  
Sbjct: 281 VIEGKVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNT 338

Query: 930 AERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
           A+  V LS+K +  +R  +  SN   RQ++ +++KR+  +D  + +T
Sbjct: 339 ADERVSLSIKALE-ERPAQDESNGEKRQSRPRRQKRQDKRDYELPET 384



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V  + SFGA +   GGV  L  +  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGTVARLTSFGAFIDL-GGVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLAIDE 252

Query: 557 KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           ++ R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGKVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++D+
Sbjct: 304 GLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQDE 358



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G ++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGTVARLTSF--GAFIDLG-GVDGLVHITELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTA 339

Query: 1440 SKRVEVTLKTSDSRTASQSEIN 1461
             +RV +++K  + R A Q E N
Sbjct: 340  DERVSLSIKALEERPA-QDESN 360



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   IV G V  +TS G FI L   +D  V ++ LS     SP+    +G+ +  +VL+
Sbjct: 191  LAVGDIVTGTVARLTSFGAFIDLG-GVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGAFVEV 298


>gi|314933658|ref|ZP_07841023.1| ribosomal protein S1 [Staphylococcus caprae C87]
 gi|313653808|gb|EFS17565.1| ribosomal protein S1 [Staphylococcus caprae C87]
          Length = 392

 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 146/355 (41%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
                    G ++ G V  +T     + +   G   G +    L+ +H+E    + SV  
Sbjct: 185 ASLLDSLSEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSHEHVESPEQVVSVGD 241

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
                 + +  D+E   + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 242 NVKVKVKSVEKDSE--RISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+         S+    GQ V   IL ++ E  RI+LS+K + 
Sbjct: 297 EIAPAVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGIDEENERISLSIKATL 351



 Score = 43.5 bits (101), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 103/259 (39%), Gaps = 48/259 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     S  Y L  S +QL ++ S+      +  + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----SGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D           +K ++L S                G VI+GKV    +FG  +     
Sbjct: 180 NDV----------KKASLLDSLSE-------------GDVIDGKVARLTNFGAFIDI--- 213

Query: 898 SDVYGFITHHQLAGATVES 916
             V G +   +L+   VES
Sbjct: 214 GGVDGLVHVSELSHEHVES 232


>gi|418562454|ref|ZP_13126911.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21262]
 gi|371973558|gb|EHO90906.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21262]
          Length = 391

 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+   V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEVVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 168/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV   +VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEVVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373


>gi|404493519|ref|YP_006717625.1| 30S ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
 gi|77545561|gb|ABA89123.1| ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
          Length = 573

 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 148/350 (42%), Gaps = 42/350 (12%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK 559
           V G V  +  +GA +   GG+  L  +  MS   +  P     VG ++  +VL    + +
Sbjct: 208 VVGVVKNLTDYGAFIDL-GGIDGLLHITDMSWGRVAHPSDVLAVGDKIKVKVLKFDREKE 266

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           R+++  K+      L++   Y          G +  +  +G FV    GV+G    SE+ 
Sbjct: 267 RVSLGLKQLTADPWLSVAEKYPTGNR---VSGKVVSLTDYGAFVELDEGVEGLIHVSEMS 323

Query: 620 LDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSG 675
                + PS + ++G  ++  +++   ++RRI+L        P  V  +    +G+++ G
Sbjct: 324 WTKRIKHPSKILNIGDDIESVVLAVDVSNRRISLGLKQIERNPWEVIGEKF-PIGTIIEG 382

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
            V  +T   + V     G   G     H++D     +  K +  P   F +       +L
Sbjct: 383 QVKNITDFGIFV-----GVDDGIDGLVHISD----LSWTKRIKHPSELFKKGDVVKAVVL 433

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D E+    L  K        QL SD     A+   P +++ G V ++ + G F+    
Sbjct: 434 NIDQENERFSLGIK--------QLASDPWQTIATRYAPGTMISGKVTSVTDFGIFLEVEE 485

Query: 784 RLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQ 832
            + G    S+ +  ++ D  K +  VG ++ + +L V++E  +I LS+K 
Sbjct: 486 GIEGLIHVSE-ISKEKVDSPKDFAKVGDNLEAVVLHVDTEDKKIALSIKH 534



 Score = 48.5 bits (114), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 163/395 (41%), Gaps = 67/395 (16%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL------------PRNNLAENSGID 273
           +LET+ E   +   VK++ D+G  +  G     G L            P + LA    I 
Sbjct: 198 TLETLAEDQEVVGVVKNLTDYGAFIDLG--GIDGLLHITDMSWGRVAHPSDVLAVGDKIK 255

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSI 332
           VK        V   DR ++ V L        K +T D   +S+    P G  VS +V S+
Sbjct: 256 VK--------VLKFDREKERVSLGL------KQLTAD-PWLSVAEKYPTGNRVSGKVVSL 300

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL- 391
            + G  +       G + +  +  T    +     N    + + +L VD ++R + L L 
Sbjct: 301 TDYGAFVELDEGVEGLIHVSEMSWTKRIKHPSKILNIGDDIESVVLAVDVSNRRISLGLK 360

Query: 392 ----NPY-LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
               NP+ ++  + P   +   +V +I D    V VD G+                V IS
Sbjct: 361 QIERNPWEVIGEKFPIGTIIEGQVKNITDFGIFVGVDDGI-------------DGLVHIS 407

Query: 444 DVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPG 499
           D++  + ++   + +K+G  V+  +L   +  E  + GI  L +  ++ +   ++   PG
Sbjct: 408 DLSWTKRIKHPSELFKKGDVVKAVVLNIDQENERFSLGIKQLASDPWQTIATRYA---PG 464

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
            ++ GKV +V  FG  ++   G++ L  +  +S+ ++  P    KVG  L   VL V  +
Sbjct: 465 TMISGKVTSVTDFGIFLEVEEGIEGLIHVSEISKEKVDSPKDFAKVGDNLEAVVLHVDTE 524

Query: 558 SKRIT-----VTHKKTLVKSKLAILSSYAEATDRL 587
            K+I      V H+K   +   A L S   AT  L
Sbjct: 525 DKKIALSIKHVAHQKEKAEVD-AFLGSQKSATSNL 558



 Score = 43.9 bits (102), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 6/159 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G +++G+V  +  FG  V    G+  L  +  +S  + +K P + FK G  +   VL + 
Sbjct: 377 GTIIEGQVKNITDFGIFVGVDDGIDGLVHISDLSWTKRIKHPSELFKKGDVVKAVVLNID 436

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +++R ++  K+        I + YA  T   +  G +T +   G F+    G++G    
Sbjct: 437 QENERFSLGIKQLASDPWQTIATRYAPGT---MISGKVTSVTDFGIFLEVEEGIEGLIHV 493

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           SE+  +    P     VG  ++  ++      ++I LS 
Sbjct: 494 SEISKEKVDSPKDFAKVGDNLEAVVLHVDTEDKKIALSI 532



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            I++G VKN+T  G F+ +   +D  V +S+LS    ++ P + F  G +V   VL+++  
Sbjct: 379  IIEGQVKNITDFGIFVGVDDGIDGLVHISDLSWTKRIKHPSELFKKGDVVKAVVLNIDQE 438

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            ++R  + +K    + AS       +    G ++ G++  V  +G+F+ +E
Sbjct: 439  NERFSLGIK----QLASDPWQTIATRYAPGTMISGKVTSVTDFGIFLEVE 484


>gi|414074052|ref|YP_006999269.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           UC509.9]
 gi|413973972|gb|AFW91436.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           UC509.9]
          Length = 408

 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 24/201 (11%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            +++A A E      + ++ G +V+G V  V +FGA V   GG+  L  +  +S   I +
Sbjct: 175 AVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTNFGAFVDL-GGIDGLVHVSELSHSRIKR 233

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITH 590
           P    K G  +  ++L +  ++ R++++ K T       V+ K  + S+           
Sbjct: 234 PSDAVKPGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPVGST---------VE 284

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G + ++   G FV  Y GV+G    S++  +    P  +  VGQVV  +++   PA  RI
Sbjct: 285 GTVKRLTDFGAFVELYPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPAEERI 344

Query: 651 NLSFM------MKPTRVSEDD 665
           +LS         +P R +++D
Sbjct: 345 SLSIKALEEAPARPARNNDND 365



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 161/367 (43%), Gaps = 42/367 (11%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFE------IVK 538
           FE L+ +  DVK   VVKG++++V++  A V   G GV+ +  L  ++  +       VK
Sbjct: 4   FETLLNSVEDVKVRDVVKGEILSVENGQATVAIVGTGVEGVLTLREITNDKDADINTFVK 63

Query: 539 PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           PG    +   LV + +  K       +  +L + +     +  E  +  I    +TK  K
Sbjct: 64  PGDVLDL---LVIKQIVGKEAEGANVYLLSLKRLEARKAWTQLEGKEGEIVTVKVTKDVK 120

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
            G  V  YNGV+GF P S   +D      +   VG+ ++ +I+    +  R    F++  
Sbjct: 121 GGLSVD-YNGVRGFIPASM--IDTYFVKDTKKFVGEEIEAKIIEVNASENR----FILSR 173

Query: 659 TRVSEDDLVKL----------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             V E + +++          G +V G V  VT     V +   G   G +   H+++ L
Sbjct: 174 RAVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTNFGAFVDL---GGIDGLV---HVSE-L 226

Query: 709 EHATVMK--SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
            H+ + +    +KPG   + ++L LD E+  L LS K +     +Q+   A      S V
Sbjct: 227 SHSRIKRPSDAVKPGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPV---GSTV 283

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDVNSETG 824
            G V  + + G FV     + G    S+ +  +R +  K    VGQ V   +LDV     
Sbjct: 284 EGTVKRLTDFGAFVELYPGVEGLVHVSQ-ISWERVENPKDVLKVGQVVNVKVLDVKPAEE 342

Query: 825 RITLSLK 831
           RI+LS+K
Sbjct: 343 RISLSIK 349



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 40/256 (15%)

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G E +  ++  N S N  + ++ +++ + A ++  +A + +    +V G V  +   G F
Sbjct: 152 GEEIEAKIIEVNASENRFILSRRAVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTNFGAF 211

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+    +    S     G  V   IL ++ E GR++LSLK +     
Sbjct: 212 VD-LGGIDGLVHVSELSHSRIKRPSDAVKPGDVVNVKILKLDPEAGRLSLSLKATQPGPW 270

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           +         +EEK                     +GS +EG V    DFG  V    + 
Sbjct: 271 EQ--------VEEKAP-------------------VGSTVEGTVKRLTDFGAFVEL--YP 301

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA-N 950
            V G +   Q++   VE+       G V+   +LDV  AE  + LS+K +     R A N
Sbjct: 302 GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPAEERISLSIKALEEAPARPARN 361

Query: 951 SNRQAQKKKRKREASK 966
           ++   +K+ RK  A +
Sbjct: 362 NDNDGEKRDRKPRAPR 377



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 36/207 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            + EGDIV G +S++ +   G  V +G  + G VH +EL +  +  P      G       
Sbjct: 192  LQEGDIVEGTVSRVTNF--GAFVDLG-GIDGLVHVSELSHSRIKRPSDAVKPGDV----- 243

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
                  V  K+L++         + LSL+++                  PG   E++E+ 
Sbjct: 244  ------VNVKILKLDPE---AGRLSLSLKAT-----------------QPGP-WEQVEEK 276

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P    V+G VK +T  G F+ L   ++  V +S +S   VE+P+    +G++V  +VL 
Sbjct: 277  APVGSTVEGTVKRLTDFGAFVELYPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLD 336

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINN 1462
            V+P  +R+ +++K  +   A  +  N+
Sbjct: 337  VKPAEERISLSIKALEEAPARPARNND 363



 Score = 47.0 bits (110), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E    L    IV+G V  VT+ G F+ L   +D  V +S LS   ++ P      G +V 
Sbjct: 187  EAFAQLQEGDIVEGTVSRVTNFGAFVDLG-GIDGLVHVSELSHSRIKRPSDAVKPGDVVN 245

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             ++L ++P + R+ ++LK +      Q E        VG  V G +KR+  +G F+ +
Sbjct: 246  VKILKLDPEAGRLSLSLKATQPGPWEQVE----EKAPVGSTVEGTVKRLTDFGAFVEL 299


>gi|157825908|ref|YP_001493628.1| 30S ribosomal protein S1 [Rickettsia akari str. Hartford]
 gi|157799866|gb|ABV75120.1| 30S ribosomal protein S1 [Rickettsia akari str. Hartford]
          Length = 568

 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 158/363 (43%), Gaps = 24/363 (6%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      + +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLAKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+ L  +    L        ++I  G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQ-LDSNPWEALKEEFPVGKKMI--GKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHASEISWLKSNQHPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359

Query: 656 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
               +  E+ L+K      +G+++   +  +T   +  +V       G I    ++   +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDK 414

Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
              ++KS  K G E + ++L ++ E   + L  K  L N   ++   +      ++V   
Sbjct: 415 GIDLLKSY-KKGDEIECKVLSINIEKEQVSLGIKQLLPNPYHEI---SDEYKKGTIVKAL 470

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           +  + + G  V    ++ GF  R++  D +     + + + +++ + ++ ++  TGRI L
Sbjct: 471 ITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDEAIEAKVVSIDKSTGRILL 530

Query: 829 SLK 831
           S+K
Sbjct: 531 SVK 533



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 130/604 (21%), Positives = 251/604 (41%), Gaps = 107/604 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P   EF +  P  + +   E+    
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPK-CEF-LALP--EVRDVVEVFIEK 87

Query: 554  LGVKSKRITVTHKKTL---VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +  ++ R  ++ +K +   +  +L I+ S  E  D  I  G +      G F    +GV 
Sbjct: 88   IEGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVV 141

Query: 611  GFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDL 666
             F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      
Sbjct: 142  AFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLAK 201

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGY 722
            +K G ++ G V  +T     + +   G   G +   HL D     + H + +        
Sbjct: 202  IKEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------L 248

Query: 723  EFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            EF+Q     ++  D ++  + L  K    N  + L  +         + G V N  + G 
Sbjct: 249  EFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEALKEE---FPVGKKMIGKVTNFADYGV 305

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            F+     L G    S+ +   +++    KT  +GQ V   +L+V++E  R++LS+KQ C 
Sbjct: 306  FIELKDGLEGLVHASE-ISWLKSNQHPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C- 362

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                    QE+ L                 +K+ E   +G++I+  +    DFG+ V+  
Sbjct: 363  --------QENPL-----------------IKFAENNPVGTIIKAPIRNITDFGIFVALG 397

Query: 896  EHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             + D  G I    ++          + + G  I+  +L +   +  V L +K +  + + 
Sbjct: 398  NNMD--GMIHEGDISWEDKGIDLLKSYKKGDEIECKVLSINIEKEQVSLGIKQLLPNPYH 455

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
            E +   +                   V A++  VK++ L + L   N   G+   ++ + 
Sbjct: 456  EISDEYKK---------------GTIVKALITEVKDDGLEVLL--NNKVAGFIKRTELSD 498

Query: 1008 QKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDV 1063
            +K  QK   F   +++ A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++
Sbjct: 499  EKDEQKPEMFKIDEAIEAKVVSIDKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNI 556

Query: 1064 GSLV 1067
            G ++
Sbjct: 557  GDIL 560



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +  +   M+++G VKN+T  G FI L   +D  + L+++S G V  P +     + V 
Sbjct: 197  EMLAKIKEGMVLEGTVKNITDYGAFIDLG-SVDGLLHLTDISWGRVNHPSEVLEFNQKVK 255

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              V+  +  +KR+ + +K  DS      +        VG  +IG++     YG+FI +++
Sbjct: 256  VMVIKFDEKTKRISLGIKQLDSNPWEALK----EEFPVGKKMIGKVTNFADYGVFIELKD 311



 Score = 40.8 bits (94), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 134/316 (42%), Gaps = 50/316 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ---RRFHIGKAVTGH 1219
            +G+++ G   KV N +A   +   LK  L  L  A E S L+  Q   +   IG+ V   
Sbjct: 289  VGKKMIG---KVTN-FADYGVFIELKDGLEGLVHASEISWLKSNQHPRKTLTIGQEVEFV 344

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL ++ EK  + L ++  Q+   +  +  + +N       G I+   I  I     G+ V
Sbjct: 345  VLEVDTEKHRVSLSIKQCQE---NPLIKFAENNPV-----GTIIKAPIRNITDF--GIFV 394

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
             +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        
Sbjct: 395  ALGNNMDGMIH---------EGDISWEDKG-IDLLKSYKKGDEIECKVLSINIEKE---Q 441

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            V L ++  L                 P  + E  ++     IV+  +  V   G  ++L+
Sbjct: 442  VSLGIKQLL-----------------PNPYHEISDEYKKGTIVKALITEVKDDGLEVLLN 484

Query: 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD--SRTASQ 1457
             K+   +  + LSD   E   + F I + +  +V+S++  + R+ +++K      R  + 
Sbjct: 485  NKVAGFIKRTELSDEKDEQKPEMFKIDEAIEAKVVSIDKSTGRILLSVKAHKIAERQKAL 544

Query: 1458 SEINNLSN-LHVGDIV 1472
             E  +  N  ++GDI+
Sbjct: 545  KEYGSSDNTTNIGDIL 560


>gi|157961894|ref|YP_001501928.1| 30S ribosomal protein S1 [Shewanella pealeana ATCC 700345]
 gi|157846894|gb|ABV87393.1| ribosomal protein S1 [Shewanella pealeana ATCC 700345]
          Length = 555

 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 140/345 (40%), Gaps = 20/345 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQSVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E T RL   G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENT-RLT--GRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L      T   +D  +    
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFAERFNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI--KPGYEFDQ- 726
           G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E    
Sbjct: 364 GDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEDAVAEYKKGDEIHAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K +  +      +D       + V   V      G  +     + 
Sbjct: 419 VLSVDPERERISLGVKQTEDDPFNAYLADKKKGVVVNGVVTAVD---AKGVTIELAETVE 475

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+   S     +  D S  Y VG  V S  + V+ +   I+LS++
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDKVESKFMGVDRKNRTISLSIR 520



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 102/471 (21%), Positives = 189/471 (40%), Gaps = 69/471 (14%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           +PG +V+G V+A+++   +V    G+K+  P+P   +F+  +   +  VG E+   +  V
Sbjct: 19  RPGSIVRGVVVAIEN--GMVLVDAGLKSESPIP-AEQFKNAQGALEVAVGDEVDVALDSV 75

Query: 557 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +       ++ +K        +L    E  + +I    I   +  G F    NG++ F P
Sbjct: 76  EDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIG---IINGKVKGGFTVELNGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            S + + P  + + + +     +V+K  +  +++  SRR  +       R +  + ++ G
Sbjct: 133 GSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEG 192

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
             V G+V  +T     V +   G   G +    +A   ++H +    ++  G E + ++L
Sbjct: 193 QSVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINVKVL 246

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNIIETGCFVRFLG 783
             D E + + L  K        QL  D     S  +P N+ + G V N+ + GCFV    
Sbjct: 247 KYDRERTRVSLGLK--------QLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIEE 298

Query: 784 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ   +  D  
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWD-- 355

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                                     + E F  G  + GK+    DFG+ +  +   D  
Sbjct: 356 -------------------------DFAERFNKGDKVSGKIKSITDFGIFIGLDGGIDGL 390

Query: 902 GFITHHQLAG------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             ++     G      A  + G  I A +L V      + L +K    D F
Sbjct: 391 VHLSDISWNGTGEDAVAEYKKGDEIHAVVLSVDPERERISLGVKQTEDDPF 441


>gi|167623971|ref|YP_001674265.1| 30S ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
 gi|167353993|gb|ABZ76606.1| ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
          Length = 555

 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 140/345 (40%), Gaps = 20/345 (5%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 188 NLQEGQSVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      L I   Y E T RL   G +T +  +GCFV    GV+G 
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENT-RLT--GRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+   +    PS + ++G  V+  ++      RRI+L      T   +D  +    
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFAERFNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI--KPGYEFDQ- 726
           G  VSG +  +T   + +     G   G     HL+D   + T   +V   K G E    
Sbjct: 364 GDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNGTGEDAVAEYKKGDEIHAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + L  K +  +      +D       + V   V      G  +     + 
Sbjct: 419 VLSVDPERERISLGVKQTEDDPFNAYLADKKKGVVVNGVVTAVD---AKGVTIELAETVE 475

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+   S     +  D S  Y VG  V S  + V+ +   I+LS++
Sbjct: 476 GYLRVSDISRERIEDASTVYAVGDKVESKFMGVDRKNRTISLSIR 520



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 102/471 (21%), Positives = 189/471 (40%), Gaps = 69/471 (14%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           +PG +V+G V+A+++   +V    G+K+  P+P   +F+  +   +  VG E+   +  V
Sbjct: 19  RPGSIVRGVVVAIEN--GMVLVDAGLKSESPIP-AEQFKNAQGALEVAVGDEVDVALDSV 75

Query: 557 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +       ++ +K        +L    E  + +I    I   +  G F    NG++ F P
Sbjct: 76  EDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIG---IINGKVKGGFTVELNGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            S + + P  + + + +     +V+K  +  +++  SRR  +       R +  + ++ G
Sbjct: 133 GSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEG 192

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
             V G+V  +T     V +   G   G +    +A   ++H +    ++  G E + ++L
Sbjct: 193 QSVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINVKVL 246

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNIIETGCFVRFLG 783
             D E + + L  K        QL  D     S  +P N+ + G V N+ + GCFV    
Sbjct: 247 KYDRERTRVSLGLK--------QLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIEE 298

Query: 784 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            + G    S+ +D    ++  SK   +G  V   +LD++ E  RI+L LKQ   +  D  
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWD-- 355

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                                     + E F  G  + GK+    DFG+ +  +   D  
Sbjct: 356 -------------------------DFAERFNKGDKVSGKIKSITDFGIFIGLDGGIDGL 390

Query: 902 GFITHHQLAG------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             ++     G      A  + G  I A +L V      + L +K    D F
Sbjct: 391 VHLSDISWNGTGEDAVAEYKKGDEIHAVVLSVDPERERISLGVKQTEDDPF 441


>gi|365924923|ref|ZP_09447686.1| 30S ribosomal protein S1 [Lactobacillus mali KCTC 3596 = DSM 20444]
 gi|420266394|ref|ZP_14768866.1| 30S ribosomal protein S1 [Lactobacillus mali KCTC 3596 = DSM 20444]
 gi|394425504|gb|EJE98463.1| 30S ribosomal protein S1 [Lactobacillus mali KCTC 3596 = DSM 20444]
          Length = 402

 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 9/189 (4%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I+KA+       T +++  G VV+GKV  + SFGA V   GGV  L  +  +S   + KP
Sbjct: 182 IVKAAREAKKAETLANLVVGDVVEGKVARLTSFGAFVDL-GGVDGLVHVSEISYERVNKP 240

Query: 540 GKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
               KVG  +  +VL + ++R  I+++ K+TL +    I    AE     +  G + ++ 
Sbjct: 241 SDVLKVGETVKVKVLSIDTERDRISLSIKQTLPQPWDNITEKVAEGD---VLEGTVKRLT 297

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 656
             G FV  + GV+G    S++       P+ +   G+ +K ++++      R+ LS    
Sbjct: 298 SFGAFVEVFPGVEGLVHISQISHKHIATPNEVLTSGETIKVKVLNVHADEHRLALSVKAL 357

Query: 657 --KPTRVSE 663
             KP+   E
Sbjct: 358 EEKPSAAGE 366



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 149/377 (39%), Gaps = 60/377 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL L P  E S    +G V+   ++S I  S +   S+++   R+      
Sbjct: 47  GVEGVVPFKELSLKPDQEVSDDVTIGDVIDLVVISRI-GSDKEGGSYLLSQRRLEARKIW 105

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           DD+ K    G  ++  V  V    +VV    +G+   ++  +   + L            
Sbjct: 106 DDIEKKFEAGETITAPVTQVVKGGLVVDAGVRGFIPASMVDDRFVEDLNQYK-------- 157

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQL--PSDASHIHPNSVVHGYVCNIIETGCF 778
             E +  ++    S N L+ +   ++ +A++       +++    VV G V  +   G F
Sbjct: 158 NQELELKIIEIEPSENRLILSHKEIVKAAREAKKAETLANLVVGDVVEGKVARLTSFGAF 217

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+    +    S    VG++V+  +L +++E  RI+LS+KQ+     
Sbjct: 218 VD-LGGVDGLVHVSEISYERVNKPSDVLKVGETVKVKVLSIDTERDRISLSIKQTLPQPW 276

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         + EK+A                    G V+EG V     FG  V  E   
Sbjct: 277 DN--------ITEKVAE-------------------GDVLEGTVKRLTSFGAFV--EVFP 307

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            V G      I+H  +A     + SG  I+  +L+V   E  + LS+K        E  S
Sbjct: 308 GVEGLVHISQISHKHIATPNEVLTSGETIKVKVLNVHADEHRLALSVKA-----LEEKPS 362

Query: 952 NRQAQKKKRKREASKDL 968
                KK++  E   DL
Sbjct: 363 AAGEAKKEKAPEGKVDL 379



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             K  E + +L    +V+G V  +TS G F+ L   +D  V +S +S   V  P     +G
Sbjct: 189  AKKAETLANLVVGDVVEGKVARLTSFGAFVDLG-GVDGLVHVSEISYERVNKPSDVLKVG 247

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + V  +VLS++    R+ +++K    +T  Q   N    +  GD++ G +KR+ S+G F+
Sbjct: 248  ETVKVKVLSIDTERDRISLSIK----QTLPQPWDNITEKVAEGDVLEGTVKRLTSFGAFV 303

Query: 1487 TI 1488
             +
Sbjct: 304  EV 305


>gi|91775280|ref|YP_545036.1| 30S ribosomal protein S1 [Methylobacillus flagellatus KT]
 gi|91775424|ref|YP_545180.1| 30S ribosomal protein S1 [Methylobacillus flagellatus KT]
 gi|91709267|gb|ABE49195.1| SSU ribosomal protein S1P [Methylobacillus flagellatus KT]
 gi|91709411|gb|ABE49339.1| SSU ribosomal protein S1P [Methylobacillus flagellatus KT]
          Length = 569

 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 151/361 (41%), Gaps = 35/361 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G VVKG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  ++L 
Sbjct: 198 LKEGAVVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLTVGEEVEAKILK 256

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +A+   Y   T RL   G +T +  +G FV    G++G  
Sbjct: 257 FDQEKNRVSLGIKQLGDDPWVALGRRYPVGT-RLF--GKVTNLTDYGAFVEIEPGIEGLV 313

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLV---K 668
             SE+   +    P+ +  +G  V+  I+  I   RR  LS  MK  + +  DD     K
Sbjct: 314 HVSEMDWTNKNVHPAKIAQLGDEVEVMILE-IDEDRR-RLSLGMKQCQANPWDDFAATHK 371

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  VSG +  +T   V +     G   G     HL+D   +    +++   K G E + 
Sbjct: 372 KGDKVSGQIKSITDFGVFI-----GLPGGIDGLVHLSDLSWNQPGEEAIRNFKKGDELEA 426

Query: 727 L-LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-----NSVVHGYVCNIIETGCFVR 780
           + L +D E   + L  K        QL SD    +       ++V G V +I   G  + 
Sbjct: 427 VVLSIDVEKERISLGVK--------QLDSDPFSAYTALNDKGAIVKGTVKSIEAKGAVIA 478

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-QSCCSSTD 839
               + G+   S+    +  D+S     G  + + I +++ +   I LS+K +      D
Sbjct: 479 LDNEVEGYLRASEVSRDKVDDISTVLKEGDEIEARITNIDRKNRSIALSIKAKDIADEAD 538

Query: 840 A 840
           A
Sbjct: 539 A 539



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 167/412 (40%), Gaps = 65/412 (15%)

Query: 287 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
           +DR R  V +S       + V ++  G   + L+  +     V+ I++N      +T + 
Sbjct: 168 LDRKRNNVVVSR------RAVLEETMGADREALLESLKEGAVVKGIVKN------ITDYG 215

Query: 347 GTVDIFHLQNTFPTTNWKNDYNQH--------KKVNARILFVDPTSRAVGLTL-----NP 393
             VD+  +      T+      +H        ++V A+IL  D     V L +     +P
Sbjct: 216 AFVDLGGIDGLLHITDLAWRRVKHPSEVLTVGEEVEAKILKFDQEKNRVSLGIKQLGDDP 275

Query: 394 YLLHNRAPPSHV----KVGDIYDQSKVVRVDRGL-GLL----LDIPSTPVSTPAYVTISD 444
           ++   R  P       KV ++ D    V ++ G+ GL+    +D  +  V       + D
Sbjct: 276 WVALGRRYPVGTRLFGKVTNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNVHPAKIAQLGD 335

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
             E  + ++++  +  S      LG +  +        A+ ++    TH   K G  V G
Sbjct: 336 EVEVMILEIDEDRRRLS------LGMKQCQ--------ANPWDDFAATH---KKGDKVSG 378

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLG--VKS 558
           ++ ++  FG  +  PGG+  L    H+S+    +PG    + FK G EL   VL   V+ 
Sbjct: 379 QIKSITDFGVFIGLPGGIDGLV---HLSDLSWNQPGEEAIRNFKKGDELEAVVLSIDVEK 435

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +RI++  K+          S+Y    D+  I  G +  IE  G  +   N V+G+   SE
Sbjct: 436 ERISLGVKQLDSDP----FSAYTALNDKGAIVKGTVKSIEAKGAVIALDNEVEGYLRASE 491

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
           +  D   + S++   G  ++ RI +    +R I LS   K      D L K 
Sbjct: 492 VSRDKVDDISTVLKEGDEIEARITNIDRKNRSIALSIKAKDIADEADALQKF 543



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 121/558 (21%), Positives = 238/558 (42%), Gaps = 46/558 (8%)

Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG-IDVKPG 277
           +L  + L+ + ++ G V+TA V SI+D   I++ GL S +  +P +    + G ++V  G
Sbjct: 16  ALFEESLARQEMRSGEVITAEVVSIDDDFVIVNAGLKSES-VIPASEFRNDRGELEVNVG 74

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
             ++  + S++       LS +         +  + ++   ++ G MV+ RV+  L   V
Sbjct: 75  DFVKVCIESLEDGYGSTKLSREKAKRLAAWQELEEAMNESRIIKG-MVNGRVKGGLT--V 131

Query: 338 ML-SFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
           M+ S   +  G+ VD+  +++T P  N + D+   K    R   V  + RAV   L   +
Sbjct: 132 MVNSIRAFLPGSLVDLRPVKDTTPFENKEWDFKVIKLDRKRNNVV-VSRRAV---LEETM 187

Query: 396 LHNR-APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 454
             +R A    +K G +     +V+     G  +D+          + I+D+A   V+   
Sbjct: 188 GADREALLESLKEGAVV--KGIVKNITDYGAFVDLG----GIDGLLHITDLAWRRVKHPS 241

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           +    G  V  +IL F   +   +  +K    +  V        G  + GKV  +  +GA
Sbjct: 242 EVLTVGEEVEAKILKFDQEKNRVSLGIKQLGDDPWVALGRRYPVGTRLFGKVTNLTDYGA 301

Query: 515 IVQFPGGVKALCPLPHMSEFEI----VKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
            V+   G++ L    H+SE +     V P K  ++G E+   +L +    +R+++  K+ 
Sbjct: 302 FVEIEPGIEGLV---HVSEMDWTNKNVHPAKIAQLGDEVEVMILEIDEDRRRLSLGMKQC 358

Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEPS 627
                    +++ +  D++   G I  I   G F+    G+ G    S+L  + PG E  
Sbjct: 359 QANPWDDFAATHKKG-DKV--SGQIKSITDFGVFIGLPGGIDGLVHLSDLSWNQPGEEAI 415

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR--VSEDDLVKLGSLVSGVVDVVTPNAV 685
             +  G  ++  ++S      RI+L      +    +   L   G++V G V  +     
Sbjct: 416 RNFKKGDELEAVVLSIDVEKERISLGVKQLDSDPFSAYTALNDKGAIVKGTVKSIEAKGA 475

Query: 686 VVYVI--AKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAK 742
           V+ +    +GY + +  +    D +       +V+K G E +  +  +D ++ ++ LS K
Sbjct: 476 VIALDNEVEGYLRASEVSRDKVDDI------STVLKEGDEIEARITNIDRKNRSIALSIK 529

Query: 743 YSLI----NSAQQLPSDA 756
              I    ++ Q+  +DA
Sbjct: 530 AKDIADEADALQKFSNDA 547



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L    +V+G VKN+T  G F+ L   +D  + +++L+   V+ P +   +G+ V  +
Sbjct: 195  LESLKEGAVVKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVKHPSEVLTVGEEVEAK 253

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +L  +    RV + +K    +      +       VG  + G++  +  YG F+ IE
Sbjct: 254  ILKFDQEKNRVSLGIK----QLGDDPWVALGRRYPVGTRLFGKVTNLTDYGAFVEIE 306


>gi|384898698|ref|YP_005774077.1| 30S ribosomal protein S1 [Helicobacter pylori F30]
 gi|317178641|dbj|BAJ56429.1| 30S ribosomal protein S1 [Helicobacter pylori F30]
          Length = 552

 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 160/400 (40%), Gaps = 62/400 (15%)

Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           K +  +V++KK + + K+ A +    E  +  I  G I    K G  V    GV+ F  R
Sbjct: 86  KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
           S   L      +   H+G+ +K  I+     +  IN+S    F +   R  E   +L++ 
Sbjct: 145 SHSSL-----KNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 199

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYEFD-QL 727
              V GVV  +TP  + V V      KG     H ++      V  +   K G E   + 
Sbjct: 200 TEPVLGVVRQITPFGIFVEV------KGVEGLVHYSEISHKGPVNPEKYYKEGDEVCVKA 253

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  D E   L LS K ++ +  +++      + P  V+   V NI   G FV     + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYVIKVVVSNIENYGAFVDIGNDIEG 310

Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           F   S+ + D   +  SK   VGQ V   I+D++ +  R+ +SLKQ      D       
Sbjct: 311 FLHVSEISWDKNVSHPSKYLSVGQEVDVKIIDIDPKNRRLRVSLKQLTNRPFDVF----- 365

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                       SKH            +G V+EGKV    DFG  ++      V G + +
Sbjct: 366 -----------ESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 400

Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H       +      + G VI+  IL + K ++ + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSTK 440



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 133/301 (44%), Gaps = 17/301 (5%)

Query: 361 TNWKNDYNQ-HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK---- 415
           ++ KND N   K++ A I+ VD  + ++ ++   +   N      V   ++ + ++    
Sbjct: 147 SSLKNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLG 205

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           VVR     G+ +++          V  S+++ +     EK YKEG  V V+ + +   + 
Sbjct: 206 VVRQITPFGIFVEVKGVE----GLVHYSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKR 261

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EF 534
             +  +KA+  +        +KPG V+K  V  ++++GA V     ++    +  +S + 
Sbjct: 262 RLSLSIKATIEDPWEEIQDKLKPGYVIKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDK 321

Query: 535 EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
            +  P K   VG E+  +++ +  K++R+ V+ K+ L      +  S  +  D L   G 
Sbjct: 322 NVSHPSKYLSVGQEVDVKIIDIDPKNRRLRVSLKQ-LTNRPFDVFESKHQVGDVL--EGK 378

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +  +   G F+    GV G     +   D   +    Y +G V+K +I+      ++I+L
Sbjct: 379 VATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISL 437

Query: 653 S 653
           S
Sbjct: 438 S 438



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 126/288 (43%), Gaps = 61/288 (21%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            HIGK +   ++ ++KE   + +  + F +    + +++S + ++                
Sbjct: 155  HIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 199

Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
               V G+V QI P         + G VH++E+ +           +G  +P   Y EG  
Sbjct: 200  TEPVLGVVRQITPFGIFVEVKGVEGLVHYSEISH-----------KGPVNPEKYYKEGDE 248

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1381
            V  K +      R    + LS++++               ++ P    E+I+D L P  +
Sbjct: 249  VCVKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYV 287

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++  V N+ + G F+ +   ++  + +S +S D  V  P K   +G+ V  +++ ++P +
Sbjct: 288  IKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEVDVKIIDIDPKN 347

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ V+LK   +R     E    S   VGD++ G++  +  +G F+ +
Sbjct: 348  RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNL 391



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 163/409 (39%), Gaps = 67/409 (16%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVKSK 559
           +++GK++  +  G IV+   GV+      H S + +    GK+ K     + RV   ++ 
Sbjct: 118 IIEGKIVGKNKGGYIVE-SQGVEYFLSRSHSSLKNDANHIGKRIKA---CIIRV-DKENH 172

Query: 560 RITVTHKKTLV---KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            I ++ K+      K +L +     EAT+ ++  G + +I   G FV    GV+G    S
Sbjct: 173 SINISRKRFFEVNDKRQLEVSKELLEATEPVL--GVVRQITPFGIFVEV-KGVEGLVHYS 229

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLV 673
           E+       P   Y  G  V  + ++     RR++LS    +  P    +D L K G ++
Sbjct: 230 EISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKL-KPGYVI 288

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-Q 726
             VV  +      V +       G      L  H+   +  K+V  P      G E D +
Sbjct: 289 KVVVSNIENYGAFVDI-------GNDIEGFL--HVSEISWDKNVSHPSKYLSVGQEVDVK 339

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++ +D ++  L +S K  L N     P D   S      V+ G V  + + G F+  LG 
Sbjct: 340 IIDIDPKNRRLRVSLK-QLTNR----PFDVFESKHQVGDVLEGKVATLTDFGAFLN-LGG 393

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G      A   +       Y +G  ++  IL +N +  +I+LS K    S T+     
Sbjct: 394 VDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSTKHLVTSPTE----- 448

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                                 ++ + +   SVI+GKV    DFGV ++
Sbjct: 449 ----------------------EFAQKYKTDSVIQGKVVSIKDFGVFIN 475


>gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
 gi|116511651|ref|YP_808867.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris SK11]
 gi|125624515|ref|YP_001032998.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281491326|ref|YP_003353306.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis KF147]
 gi|385830375|ref|YP_005868188.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
 gi|385838684|ref|YP_005876314.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris A76]
 gi|389854887|ref|YP_006357131.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           NZ9000]
 gi|418039269|ref|ZP_12677575.1| hypothetical protein LLCRE1631_02382 [Lactococcus lactis subsp.
           cremoris CNCM I-1631]
 gi|12723763|gb|AAK04936.1|AE006317_5 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
 gi|116107305|gb|ABJ72445.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. cremoris SK11]
 gi|124493323|emb|CAL98296.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281375067|gb|ADA64585.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147]
 gi|300071309|gb|ADJ60709.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           NZ9000]
 gi|326406383|gb|ADZ63454.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
 gi|354692385|gb|EHE92215.1| hypothetical protein LLCRE1631_02382 [Lactococcus lactis subsp.
           cremoris CNCM I-1631]
 gi|358749912|gb|AEU40891.1| SSU ribosomal protein S1p [Lactococcus lactis subsp. cremoris A76]
 gi|374672879|dbj|BAL50770.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis IO-1]
          Length = 408

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 24/201 (11%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            +++A A E      + ++ G +V+G V  V +FGA V   GG+  L  +  +S   I +
Sbjct: 175 AVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTNFGAFVDL-GGIDGLVHVSELSHSRIKR 233

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITH 590
           P    K G  +  ++L +  ++ R++++ K T       V+ K  + S+           
Sbjct: 234 PSDAVKPGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPVGST---------VE 284

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G + ++   G FV  Y GV+G    S++  +    P  +  VGQVV  +++   PA  RI
Sbjct: 285 GTVKRLTDFGAFVELYPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPAEERI 344

Query: 651 NLSFM------MKPTRVSEDD 665
           +LS         +P R +++D
Sbjct: 345 SLSIKALEEAPARPARNNDND 365



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 161/367 (43%), Gaps = 42/367 (11%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFE------IVK 538
           FE L+ +  DVK   VVKG++++V++  A V   G GV+ +  L  ++  +       VK
Sbjct: 4   FETLLNSVEDVKVRDVVKGEILSVENGQATVAIVGTGVEGVLTLREITNDKDADINTFVK 63

Query: 539 PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           PG    +   LV + +  K       +  +L + +     +  E  +  I    +TK  K
Sbjct: 64  PGDVLDL---LVIKQIVGKEAEGANVYLLSLKRLEARKAWTQLEGKEGEIVTVKVTKDVK 120

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
            G  V  YNGV+GF P S   +D      +   VG+ ++ +I+    +  R    F++  
Sbjct: 121 GGLSVD-YNGVRGFIPASM--IDTYFVKDTKKFVGEEIEAKIIEVNASENR----FILSR 173

Query: 659 TRVSEDDLVKL----------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             V E + +++          G +V G V  VT     V +   G   G +   H+++ L
Sbjct: 174 RAVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTNFGAFVDL---GGIDGLV---HVSE-L 226

Query: 709 EHATVMK--SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
            H+ + +    +KPG   + ++L LD E+  L LS K +     +Q+   A      S V
Sbjct: 227 SHSRIKRPSDAVKPGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPV---GSTV 283

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDVNSETG 824
            G V  + + G FV     + G    S+ +  +R +  K    VGQ V   +LDV     
Sbjct: 284 EGTVKRLTDFGAFVELYPGVEGLVHVSQ-ISWERVENPKDVLKVGQVVNVKVLDVKPAEE 342

Query: 825 RITLSLK 831
           RI+LS+K
Sbjct: 343 RISLSIK 349



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 40/256 (15%)

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G E +  ++  N S N  + ++ +++ + A ++  +A + +    +V G V  +   G F
Sbjct: 152 GEEIEAKIIEVNASENRFILSRRAVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTNFGAF 211

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+    +    S     G  V   IL ++ E GR++LSLK +     
Sbjct: 212 VD-LGGIDGLVHVSELSHSRIKRPSDAVKPGDVVNVKILKLDPEAGRLSLSLKATQPGPW 270

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           +         +EEK                     +GS +EG V    DFG  V    + 
Sbjct: 271 EQ--------VEEKAP-------------------VGSTVEGTVKRLTDFGAFVEL--YP 301

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA-N 950
            V G +   Q++   VE+       G V+   +LDV  AE  + LS+K +     R A N
Sbjct: 302 GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPAEERISLSIKALEEAPARPARN 361

Query: 951 SNRQAQKKKRKREASK 966
           ++   +K+ RK  A +
Sbjct: 362 NDNDGEKRDRKPRAPR 377



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 36/207 (17%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            + EGDIV G +S++ +   G  V +G  + G VH +EL +  +  P      G       
Sbjct: 192  LQEGDIVEGTVSRVTNF--GAFVDLG-GIDGLVHVSELSHSRIKRPSDAVKPGDV----- 243

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
                  V  K+L++         + LSL+++                  PG   E++E+ 
Sbjct: 244  ------VNVKILKLDPE---AGRLSLSLKAT-----------------QPGP-WEQVEEK 276

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P    V+G VK +T  G F+ L   ++  V +S +S   VE+P+    +G++V  +VL 
Sbjct: 277  APVGSTVEGTVKRLTDFGAFVELYPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLD 336

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINN 1462
            V+P  +R+ +++K  +   A  +  N+
Sbjct: 337  VKPAEERISLSIKALEEAPARPARNND 363



 Score = 47.0 bits (110), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E    L    IV+G V  VT+ G F+ L   +D  V +S LS   ++ P      G +V 
Sbjct: 187  EAFAQLQEGDIVEGTVSRVTNFGAFVDLG-GIDGLVHVSELSHSRIKRPSDAVKPGDVVN 245

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             ++L ++P + R+ ++LK +      Q E        VG  V G +KR+  +G F+ +
Sbjct: 246  VKILKLDPEAGRLSLSLKATQPGPWEQVE----EKAPVGSTVEGTVKRLTDFGAFVEL 299


>gi|395778971|ref|ZP_10459482.1| 30S ribosomal protein S1 [Bartonella elizabethae Re6043vi]
 gi|423714819|ref|ZP_17689043.1| 30S ribosomal protein S1 [Bartonella elizabethae F9251]
 gi|395417146|gb|EJF83498.1| 30S ribosomal protein S1 [Bartonella elizabethae Re6043vi]
 gi|395431038|gb|EJF97066.1| 30S ribosomal protein S1 [Bartonella elizabethae F9251]
          Length = 566

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 137/615 (22%), Positives = 238/615 (38%), Gaps = 98/615 (15%)

Query: 486  FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            FE L+   F  +D+  G VVKG+VIA++   AI+    G+K    +P + EF     G K
Sbjct: 11   FEALLTESFQTNDLNEGSVVKGRVIAIEKDMAIID--AGLKVEGRIP-LKEF-----GAK 62

Query: 543  FKVGAELVFRVLGVKSKRI-TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI---EK 598
             K G+  V   + V  +RI     +  L + K     S+    ++      +  +   + 
Sbjct: 63   AKDGSLQVGDEVEVYIERIENAMGEAVLSREKARREESWVRLEEKFNAGARVEGVIFSQV 122

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSF 654
             G F    +G   F PRS++ + P  + S + H  Q  +     R   +I  SRR  L  
Sbjct: 123  KGGFTVDLDGAVAFLPRSQVDIRPIRDVSPLMHNAQSFEILKMDRRRGNIVVSRRTVLEE 182

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEH 710
                 R      ++   +V GVV  +T     V +   G   G +    +A    +H   
Sbjct: 183  SRAEQRSEIVQNLEENQIVEGVVKNITDYGAFVDL---GGIDGLLHVTDMAWRRVNHPSE 239

Query: 711  ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVV 765
               +   IK      Q++ ++ ++  + L  K        QL SD     S  +P    +
Sbjct: 240  VLTIGQTIKV-----QIIRINQDTHRISLGMK--------QLESDPWESISVRYPIGKKI 286

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
             G V NI + G FV     + G    S+ +   +     K     Q V   +L+++    
Sbjct: 287  TGAVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNVHPGKILSTSQEVEVVVLEIDPSKR 346

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            RI+L LKQ+  +  +A                           +   F + S IEG+V  
Sbjct: 347  RISLGLKQTFENPWEA---------------------------FANKFPVNSQIEGEVKN 379

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDL 936
              +FG+ +  E   DV G +    L           T   G +++A +LDV   +  + L
Sbjct: 380  KTEFGLFIGLE--GDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDVDIEKERISL 437

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN-- 994
             +K +  D+  EA              AS +L     V   V  V +N + + L ++N  
Sbjct: 438  GIKQLSSDKVGEA-------------AASGELRKGAVVTCEVIAVNDNDIDVKLIDHNLE 484

Query: 995  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR 1054
             +I  A ++    ++ P++ F  GQ V A + A    +    + +    I+E + + ++ 
Sbjct: 485  TTIRRADLARDRDEQRPER-FAIGQKVDARITAFDKKTRKISVSIKALEIAEEKEAVAQY 543

Query: 1055 AKKKSSYDVGSLVQA 1069
                S   +G ++ A
Sbjct: 544  GSTDSGASLGDILGA 558



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 175/444 (39%), Gaps = 76/444 (17%)

Query: 726  QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            ++L +D    N+++S +  L  S A+Q      ++  N +V G V NI + G FV  LG 
Sbjct: 161  EILKMDRRRGNIVVSRRTVLEESRAEQRSEIVQNLEENQIVEGVVKNITDYGAFVD-LGG 219

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    +     +    S+   +GQ+++  I+ +N +T RI+L +KQ            
Sbjct: 220  IDGLLHVTDMAWRRVNHPSEVLTIGQTIKVQIIRINQDTHRISLGMKQ------------ 267

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
                       L+S       ++    + IG  I G V    D+G  V  E       H 
Sbjct: 268  -----------LESDPWESISVR----YPIGKKITGAVTNITDYGGFVEIEPGIEGLIHV 312

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR----- 953
                +   +   G  + +   ++  +L++  ++R + L LK  F + + EA +N+     
Sbjct: 313  SEMSWTKKNVHPGKILSTSQEVEVVVLEIDPSKRRISLGLKQTFENPW-EAFANKFPVNS 371

Query: 954  QAQKK-KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQ 1012
            Q + + K K E    +G+   V+ +V         LS  ++N   G   +  YN      
Sbjct: 372  QIEGEVKNKTEFGLFIGLEGDVDGMVH--------LSDLDWNRP-GEQVIDTYN------ 416

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET---ETSSSKRAKKKSSYDVGSLVQA 1069
                 G  V A V+ +       R+ L +K +S     E ++S   +K      G++V  
Sbjct: 417  ----KGDIVKAVVLDVDIEKE--RISLGIKQLSSDKVGEAAASGELRK------GAVVTC 464

Query: 1070 EITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
            E+  +   ++ +K         I   ++  D+    E     F IGQ V ARI A   K 
Sbjct: 465  EVIAVNDNDIDVKLIDHNLETTIRRADLARDRD---EQRPERFAIGQKVDARITAFDKKT 521

Query: 1129 DMKKSFLWELSIKPSMLTVSEIGS 1152
                  +  L I      V++ GS
Sbjct: 522  RKISVSIKALEIAEEKEAVAQYGS 545



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 5/119 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L  N IV+G VKN+T  G F+ L   +D  + +++++   V  P +   IG+ + 
Sbjct: 190  EIVQNLEENQIVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEVLTIGQTIK 248

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +++ +   + R+ + +K  +S       +       +G  + G +  +  YG F+ IE
Sbjct: 249  VQIIRINQDTHRISLGMKQLESDPWESISV----RYPIGKKITGAVTNITDYGGFVEIE 303


>gi|383482276|ref|YP_005391190.1| 30S ribosomal protein S1 [Rickettsia montanensis str. OSU 85-930]
 gi|378934630|gb|AFC73131.1| 30S ribosomal protein S1 [Rickettsia montanensis str. OSU 85-930]
          Length = 568

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 154/361 (42%), Gaps = 20/361 (5%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKKEFPVGKQ---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEVSWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360

Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                P T+ +E++ V  G+++   +  +T   +  +V       G I    ++   +  
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
            ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   + 
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            + + G  V    ++ GF  R++  D +     + + + + + + ++ +   TGRI LS+
Sbjct: 473 EVKDEGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFQIDEEIEAKVVSIEKSTGRILLSV 532

Query: 831 K 831
           K
Sbjct: 533 K 533



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 131/603 (21%), Positives = 245/603 (40%), Gaps = 105/603 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V    + ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAIKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +         + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKKE---FPVGKQMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            +     L G    S  V   +++ +  KT  +GQ V   +L+V++E  R++LS+KQ C  
Sbjct: 307  IELKDGLEGLV-HSSEVSWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C-- 362

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
                   QE+ L                  K+ E   +G++I+  +    DFG+ V+   
Sbjct: 363  -------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGN 398

Query: 897  HSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
            + D  G I    ++          + + G  I+  +L +   +  V L +K +  + +  
Sbjct: 399  NMD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPY-- 454

Query: 949  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
                         +E S +      V A++  VK+  L + L   N   G+   ++ + +
Sbjct: 455  -------------QEISDEYKKGTIVKALITEVKDEGLEVLL--NNKVAGFIKRTELSDE 499

Query: 1009 KFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVG 1064
            K  QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G
Sbjct: 500  KDEQKPEMFQIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMG 557

Query: 1065 SLV 1067
             ++
Sbjct: 558  DIL 560



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEVSWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
            ++ EK  + L ++  Q+            N  T   E + VG  I   +  +   G+ V 
Sbjct: 348  VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V
Sbjct: 396  LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QV 442

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             L ++                   +P  + E  ++     IV+  +  V  +G  ++L+ 
Sbjct: 443  SLGIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLNN 485

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            K+   +  + LSD   E   + F I + +  +V+S+E  + R+ +++K 
Sbjct: 486  KVAGFIKRTELSDEKDEQKPEMFQIDEEIEAKVVSIEKSTGRILLSVKA 534


>gi|374855298|dbj|BAL58159.1| 30S ribosomal protein S1 [uncultured Acidobacteria bacterium]
          Length = 593

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 160/388 (41%), Gaps = 47/388 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP----GLLLQG 282
           L  ++EG ++   VKS+ D+G  +  G     G L   +++       K     G ++Q 
Sbjct: 230 LSQLEEGYIVEGRVKSLADYGAFVDIG--GIDGLLHITDISWKKIAHPKEVFTVGEVIQV 287

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            +  IDR    + L        K +  +      + L PG  V  +V  + + G  +   
Sbjct: 288 KILKIDRETGRINLGY------KQLWPNPWDTLAERLPPGSRVKGKVTRVTDYGAFVEVE 341

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLL- 396
               G +    L       +     +   +V   +L VD  +R + L+L     +P+ L 
Sbjct: 342 EGIEGLIHASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLRQLQPDPWRLF 401

Query: 397 ---HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
              H+       +V  I D    V V++G+                V +SD++   V+  
Sbjct: 402 AETHSIGARVRGRVRGITDFGAFVEVEKGI-------------EGLVHVSDISRRRVKHP 448

Query: 454 EKKYKEGSCVRVRI----LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
            +  K+G  V   I    L  R L GL+   L+   +E    TH   + G +V+GKV+  
Sbjct: 449 SEVLKKGQEVEAIIKELDLAARRL-GLSMKELEPDPWEEFFNTH---RVGDIVRGKVVRF 504

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
            SFGA V   GGV+ LC +  +S+  + KP    ++G EL FR+L +  + +RI ++ + 
Sbjct: 505 ASFGAFVDV-GGVEGLCHISELSDEHVEKPEDVVQIGEELDFRILRLNPEERRIALSARA 563

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITK 595
                + A   +  E T R+ + G I +
Sbjct: 564 ARHDREPAY--TIGEDTGRIASLGEIAR 589



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 140/315 (44%), Gaps = 26/315 (8%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LATGILKASAFEGLVFTHSDVKP 498
           I+D++ +++   ++ +  G  ++V+IL      G   L    L  + ++ L      + P
Sbjct: 264 ITDISWKKIAHPKEVFTVGEVIQVKILKIDRETGRINLGYKQLWPNPWDTLA---ERLPP 320

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVL 554
           G  VKGKV  V  +GA V+   G++ L    H SE    K    P K    G E++  VL
Sbjct: 321 GSRVKGKVTRVTDYGAFVEVEEGIEGLI---HASELTWEKRPKHPSKYVSPGDEVLVEVL 377

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  +++R++++ ++ L      + +       R+   G +  I   G FV    G++G 
Sbjct: 378 QVDAQNRRLSLSLRQ-LQPDPWRLFAETHSIGARV--RGRVRGITDFGAFVEVEKGIEGL 434

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM-MKPTRVSE-DDLVKLG 670
              S++       PS +   GQ V+  I     A+RR+ LS   ++P    E  +  ++G
Sbjct: 435 VHVSDISRRRVKHPSEVLKKGQEVEAIIKELDLAARRLGLSMKELEPDPWEEFFNTHRVG 494

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLV 729
            +V G V         V V   G  +G      L+D  EH    + V++ G E D ++L 
Sbjct: 495 DIVRGKVVRFASFGAFVDV---GGVEGLCHISELSD--EHVEKPEDVVQIGEELDFRILR 549

Query: 730 LDNESSNLLLSAKYS 744
           L+ E   + LSA+ +
Sbjct: 550 LNPEERRIALSARAA 564



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 156/407 (38%), Gaps = 67/407 (16%)

Query: 726  QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            +++ ++    N++LS +  L    A++     S +    +V G V ++ + G FV  +G 
Sbjct: 199  RVIKVNRRQQNIVLSRRALLEEEEARRRAQILSQLEEGYIVEGRVKSLADYGAFVD-IGG 257

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    +     + A   + + VG+ ++  IL ++ ETGRI L  KQ   +  D     
Sbjct: 258  IDGLLHITDISWKKIAHPKEVFTVGEVIQVKILKIDRETGRINLGYKQLWPNPWDT---- 313

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
                L E++                     GS ++GKV    D+G  V  EE      H+
Sbjct: 314  ----LAERLPP-------------------GSRVKGKVTRVTDYGAFVEVEEGIEGLIHA 350

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
                +    +     V  G  +   +L V    R + LSL+ +  D +R          +
Sbjct: 351  SELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLRQLQPDPWRLFAETHSIGAR 410

Query: 959  KRKR-EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--KFPQKQF 1015
             R R     D G    V   +E                  G   VSD + +  K P +  
Sbjct: 411  VRGRVRGITDFGAFVEVEKGIE------------------GLVHVSDISRRRVKHPSEVL 452

Query: 1016 LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 1075
              GQ V A +  L     A RL L +K     E       +  +++ VG +V+ ++    
Sbjct: 453  KKGQEVEAIIKEL--DLAARRLGLSMK-----ELEPDPWEEFFNTHRVGDIVRGKVVRFA 505

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
                 +  G G  G  HI+E++D+     E++    +IG+ +  RI+
Sbjct: 506  SFGAFVDVG-GVEGLCHISELSDEHVEKPEDV---VQIGEELDFRIL 548



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 158/387 (40%), Gaps = 50/387 (12%)

Query: 471 RHLEGLATGILKASAFEG---LVFTHSD--VKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
           +HLE    G +K S  E    LV+   D   K G  + G++      G  V   GGV+A 
Sbjct: 117 KHLES-PDGYVKLSYAEAQRKLVWAAIDRAFKTGAPITGRITERIKGGLKVNL-GGVEAF 174

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL----VKSKLAILSS 579
            P   + +   V+  + +K G E+  RV+ V  + + I ++ +  L     + +  ILS 
Sbjct: 175 LPASQV-DLRQVRNLEAWK-GREIEARVIKVNRRQQNIVLSRRALLEEEEARRRAQILSQ 232

Query: 580 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 639
             E     I  G +  +  +G FV    G+ G    +++       P  ++ VG+V++ +
Sbjct: 233 LEEG---YIVEGRVKSLADYGAFVDI-GGIDGLLHITDISWKKIAHPKEVFTVGEVIQVK 288

Query: 640 IMSSIPASRRINLSF-MMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYS 695
           I+     + RINL +  + P     D L +    GS V G V  VT     V V      
Sbjct: 289 ILKIDRETGRINLGYKQLWPN--PWDTLAERLPPGSRVKGKVTRVTDYGAFVEV------ 340

Query: 696 KGTIPTEHLADHLEHATVM---------KSVIKPGYE-FDQLLVLDNESSNLLLSAKYSL 745
                 E   + L HA+ +            + PG E   ++L +D ++  L LS +  L
Sbjct: 341 ------EEGIEGLIHASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLR-QL 393

Query: 746 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
                +L ++   I   + V G V  I + G FV     + G    S     +    S+ 
Sbjct: 394 QPDPWRLFAETHSI--GARVRGRVRGITDFGAFVEVEKGIEGLVHVSDISRRRVKHPSEV 451

Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQ 832
              GQ V + I +++    R+ LS+K+
Sbjct: 452 LKKGQEVEAIIKELDLAARRLGLSMKE 478



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G V+ +T  G F+ + + ++  V +S++S   V+ P +    G+ V   +  ++  ++
Sbjct: 411  VRGRVRGITDFGAFVEVEKGIEGLVHVSDISRRRVKHPSEVLKKGQEVEAIIKELDLAAR 470

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1488
            R+ +++K  +     +       N H VGDIV G++ R  S+G F+ +
Sbjct: 471  RLGLSMKELEPDPWEE-----FFNTHRVGDIVRGKVVRFASFGAFVDV 513



 Score = 40.4 bits (93), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 90/190 (47%), Gaps = 24/190 (12%)

Query: 1302 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1361
            P S  D  Q   L  + +G+ ++ +V++++R  +   ++ LS R+ L+   +   + +  
Sbjct: 176  PASQVDLRQVRNLEAW-KGREIEARVIKVNRRQQ---NIVLSRRALLEEEEARRRAQI-- 229

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
                       +  L    IV+G VK++   G F+ +   +D  + ++++S   +  P++
Sbjct: 230  -----------LSQLEEGYIVEGRVKSLADYGAFVDIG-GIDGLLHITDISWKKIAHPKE 277

Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVE 1480
             F +G+++  ++L ++  + R+ +  K         +  + L+  L  G  V G++ RV 
Sbjct: 278  VFTVGEVIQVKILKIDRETGRINLGYK-----QLWPNPWDTLAERLPPGSRVKGKVTRVT 332

Query: 1481 SYGLFITIEN 1490
             YG F+ +E 
Sbjct: 333  DYGAFVEVEE 342


>gi|339498164|ref|ZP_08659140.1| SSU ribosomal protein S1P [Leuconostoc pseudomesenteroides KCTC
           3652]
 gi|399515907|ref|ZP_10757540.1| SSU ribosomal protein S1p [Leuconostoc pseudomesenteroides 4882]
 gi|398649341|emb|CCJ65567.1| SSU ribosomal protein S1p [Leuconostoc pseudomesenteroides 4882]
          Length = 397

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 27/265 (10%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
           GD  D +KV+   RG GL++D+       P S  A   +SD+ + + + ++ +  E    
Sbjct: 110 GDTVD-AKVINAVRG-GLIVDVNGVRGFVPASMVADRFVSDLNQFKNKDIKAQVIEIDAS 167

Query: 464 RVR-ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
           + R IL  + +         A AF  L         G VV+GKV  +  FGA V   GGV
Sbjct: 168 KARLILSRKAVAAQERAAQLAEAFAKLTV-------GEVVEGKVARLTDFGAFVDL-GGV 219

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVK--SKLAILS 578
             L  +  +S   +  P      G  +  ++L + S+  RI+++ K T      K+A   
Sbjct: 220 DGLVHVSEISHDRVKNPADVLTKGEVVNVKILALDSEKGRISLSIKATQPGPWDKVA--- 276

Query: 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
              EA    +  G + +++  G FV  + G++G    S++       PS +   G  VK 
Sbjct: 277 --EEAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSDVLKSGDKVKV 334

Query: 639 RIMSSIPASRRINLSFMM---KPTR 660
           +++   PA  RI+LS      KP R
Sbjct: 335 QVLDVKPAEERISLSMKALEEKPER 359



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 142/364 (39%), Gaps = 48/364 (13%)

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
             +  + G +G  P  E   D     +    VG  V+  ++S++ + +   +++++   R
Sbjct: 37  AVIGLHTGEEGVVPAREYSDDRNINLADELKVGDSVEAVVISNVTSDKE-GVAYLLSKKR 95

Query: 661 VSEDDLVKLGSLVSG-VVDVVTPNAVVVYVIAK-GYSKGTIPTEHLADHL--EHATVMKS 716
           +      +  S   G  VD    NAV   +I      +G +P   +AD    +       
Sbjct: 96  LEARKAWENLSFAEGDTVDAKVINAVRGGLIVDVNGVRGFVPASMVADRFVSDLNQFKNK 155

Query: 717 VIKPGYEFDQLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
            IK      Q++ +D   + L+LS K  +    A QL    + +    VV G V  + + 
Sbjct: 156 DIKA-----QVIEIDASKARLILSRKAVAAQERAAQLAEAFAKLTVGEVVEGKVARLTDF 210

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G FV  LG + G    S+    +  + +     G+ V   IL ++SE GRI+LS+K +  
Sbjct: 211 GAFVD-LGGVDGLVHVSEISHDRVKNPADVLTKGEVVNVKILALDSEKGRISLSIKATQP 269

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
              D                           K  E    G+V+EG V    DFG  V  E
Sbjct: 270 GPWD---------------------------KVAEEAPAGTVLEGTVKRVKDFGAFV--E 300

Query: 896 EHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
               + G +   Q++   +E       SG  ++  +LDV  AE  + LS+K +     RE
Sbjct: 301 IFPGIEGLVHVSQISHKRIENPSDVLKSGDKVKVQVLDVKPAEERISLSMKALEEKPERE 360

Query: 949 ANSN 952
              N
Sbjct: 361 DRGN 364



 Score = 47.0 bits (110), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 159/373 (42%), Gaps = 67/373 (17%)

Query: 1085 IGFH----GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSI 1140
            IG H    G +   E +DD+ N+  NL    K+G +V A +I  SN    K+   + LS 
Sbjct: 39   IGLHTGEEGVVPAREYSDDR-NI--NLADELKVGDSVEAVVI--SNVTSDKEGVAYLLSK 93

Query: 1141 KPSMLTVSEIGSKLLFEECDVSIGQRVT----GYVYKVDNEWALLTISRHLKAQLFILDS 1196
            K   L   +    L F E D    + +     G +  V+     +  S  + A  F+   
Sbjct: 94   K--RLEARKAWENLSFAEGDTVDAKVINAVRGGLIVDVNGVRGFVPAS--MVADRFV--- 146

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
                S+L +F+      K +   V+ I+  K   RL+L        ++   ++    +  
Sbjct: 147  ----SDLNQFKN-----KDIKAQVIEIDASKA--RLILSRKAVAAQERAAQLAEAFAKLT 195

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  G++V G+++++     G  V +G  + G VH +E+ +  V +P         D L+ 
Sbjct: 196  V--GEVVEGKVARLTDF--GAFVDLG-GVDGLVHVSEISHDRVKNPA--------DVLT- 241

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
              +G+ V  K+L +  + +G   + LS++++                  PG   +  E+ 
Sbjct: 242  --KGEVVNVKILALD-SEKG--RISLSIKAT-----------------QPGPWDKVAEEA 279

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
                +++G VK V   G F+ +   ++  V +S +S   +E+P      G  V  +VL V
Sbjct: 280  PAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSDVLKSGDKVKVQVLDV 339

Query: 1437 EPLSKRVEVTLKT 1449
            +P  +R+ +++K 
Sbjct: 340  KPAEERISLSMKA 352


>gi|336233298|ref|YP_004590044.1| 30S ribosomal protein S1 [Buchnera aphidicola (Cinara tujafilina)]
 gi|335345239|gb|AEH39785.1| 30S ribosomal protein S1 [Buchnera aphidicola (Cinara tujafilina)]
          Length = 536

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 34/301 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K G +++G V  +  +GA +   GGV  L  +  M+   +  P +  K+G ++  ++
Sbjct: 187 NNLKEGNIIQGIVKNLTDYGAFIDL-GGVDGLLHITDMAWKRVKHPNEIVKIGDDIRVKI 245

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +  R+++  K+  +   + +   Y E T      G +T +  +GCFV    GV+G
Sbjct: 246 LKFDQEKTRVSLGLKQLGIDPWINLEKRYPEGTKH---QGIVTNLTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKP-TRVSEDDL 666
               SE+   +    PS +   G+ ++  I++     RRI+L      + P  + S+ + 
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVKSGESIQVSILNIDEERRRISLGIKQCTINPWNKFSKKN- 361

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEF 724
            K G +VSG +  +T     +++  KG   G +   HL+D   + +  +SV   K G + 
Sbjct: 362 -KRGCIVSGKIKSITDFG--IFIGLKGGIDGLV---HLSDLSWYTSGEESVKKYKKGDDI 415

Query: 725 DQL-LVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-----PNSVVHGYVCNIIETGCF 778
             + L +D+E   + L  K        QL  D  +I+      N+VV G +  I E   F
Sbjct: 416 SAIVLQVDSERERISLGIK--------QLTEDPFNIYITKNKKNTVVSGVIRLIEEKIIF 467

Query: 779 V 779
           +
Sbjct: 468 L 468



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 118/286 (41%), Gaps = 32/286 (11%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           I+D+A + V+   +  K G  +RV+IL F   +   +  LK    +  +        G  
Sbjct: 220 ITDMAWKRVKHPNEIVKIGDDIRVKILKFDQEKTRVSLGLKQLGIDPWINLEKRYPEGTK 279

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI----VKPGKKFKVGAELVFRVLGV- 556
            +G V  +  +G  V+   GV+ L    H+SE +     + P K  K G  +   +L + 
Sbjct: 280 HQGIVTNLTDYGCFVEIEEGVEGLV---HVSEMDWTNKNIHPSKVVKSGESIQVSILNID 336

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAP 614
            + +RI++  K+  +       + +++   R  I  G I  I   G F+    G+ G   
Sbjct: 337 EERRRISLGIKQCTINP----WNKFSKKNKRGCIVSGKIKSITDFGIFIGLKGGIDGLVH 392

Query: 615 RSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------V 667
            S+L     G E    Y  G  +   ++       RI+L       +++ED         
Sbjct: 393 LSDLSWYTSGEESVKKYKKGDDISAIVLQVDSERERISLGI----KQLTEDPFNIYITKN 448

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT-----IPTEHLADHL 708
           K  ++VSGV+ ++     ++++I +   +G      IP E+   +L
Sbjct: 449 KKNTVVSGVIRLIEEK--IIFLILEPGIEGCLKTIDIPNEYRQKYL 492



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 47/233 (20%)

Query: 726 QLLVLDNESSNLLLSAKY----SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           ++L  D E + + L  K       IN  ++ P    H        G V N+ + GCFV  
Sbjct: 244 KILKFDQEKTRVSLGLKQLGIDPWINLEKRYPEGTKH-------QGIVTNLTDYGCFVEI 296

Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
              + G    S+ +D    ++  SK    G+S++ +IL+++ E  RI+L +KQ C  +  
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVKSGESIQVSILNIDEERRRISLGIKQ-CTINPW 354

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE--- 896
             F                SK N            G ++ GK+    DFG+ +  +    
Sbjct: 355 NKF----------------SKKNKR----------GCIVSGKIKSITDFGIFIGLKGGID 388

Query: 897 ---HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
              H     + T  + +    + G  I A +L V      + L +K +  D F
Sbjct: 389 GLVHLSDLSWYTSGEESVKKYKKGDDISAIVLQVDSERERISLGIKQLTEDPF 441


>gi|333370713|ref|ZP_08462697.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
 gi|332977266|gb|EGK14058.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
          Length = 391

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 413 QSKVVRVDRGLGLLLDIPS---TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           +++V  V +G GL++D+      P S      + D ++ + RKL  K  E   V+ +++ 
Sbjct: 118 EAEVADVVKG-GLVVDLGVRGFIPASLVERHYVEDFSDYKGRKLSLKVIEIDPVKNKLIL 176

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
            R        +L   A +    T + ++PG V++G V  +  FGA V   GGV  L  + 
Sbjct: 177 SRK------AVLDEEADQRKQETLAGLQPGQVMEGTVQRLTDFGAFVDI-GGVDGLVHVS 229

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
            ++   +  P +    G ++  +VL V  +++RI+++ K+T        +S   +A D  
Sbjct: 230 ELAWNRVEHPSEVLSEGDQVQVKVLKVDQQNERISLSIKETQ-PGPWEKVSEEIKAGD-- 286

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G + ++   G FV  Y GV+G    S++       PS     GQ V+ +++   P  
Sbjct: 287 IVTGTVKRLVSFGAFVEVYQGVEGLVHISQISRRHIATPSEELEEGQEVRVKVLDMQPEQ 346

Query: 648 RRINLSF 654
           +RI+LS 
Sbjct: 347 KRISLSI 353



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 141/343 (41%), Gaps = 25/343 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +VKGKV  V+    +V        + P+  +S   + K       G E+  +V+ +  
Sbjct: 27  GDIVKGKVTKVEDHQVMVDVNYKFDGVIPISELSSLHVDKASDVLSEGDEVEVKVIRIND 86

Query: 559 KRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +   +   K  V +  A   L    E+ + L     +  + K G  V    GV+GF P S
Sbjct: 87  EEDKLVLSKKAVDADRAWEELQQKFESGETL--EAEVADVVKGGLVVDL--GVRGFIPAS 142

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSEDDLVKL--G 670
            L      E  S Y  G+ +  +++   P   ++ LS       +  +  ++ L  L  G
Sbjct: 143 -LVERHYVEDFSDYK-GRKLSLKVIEIDPVKNKLILSRKAVLDEEADQRKQETLAGLQPG 200

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            ++ G V  +T     V +   G   G +    LA + +EH +    V+  G +   ++L
Sbjct: 201 QVMEGTVQRLTDFGAFVDI---GGVDGLVHVSELAWNRVEHPS---EVLSEGDQVQVKVL 254

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D ++  + LS K +     +++   +  I    +V G V  ++  G FV     + G 
Sbjct: 255 KVDQQNERISLSIKETQPGPWEKV---SEEIKAGDIVTGTVKRLVSFGAFVEVYQGVEGL 311

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              S+      A  S+    GQ VR  +LD+  E  RI+LS+K
Sbjct: 312 VHISQISRRHIATPSEELEEGQEVRVKVLDMQPEQKRISLSIK 354



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 142/336 (42%), Gaps = 69/336 (20%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA-------- 1215
            G  V G V KV++   ++ ++       +  D     SEL       H+ KA        
Sbjct: 27   GDIVKGKVTKVEDHQVMVDVN-------YKFDGVIPISELSSL----HVDKASDVLSEGD 75

Query: 1216 -VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1272
             V   V+ IN E+   +LVL       S K VD     + +Q     G+ +   ++ ++ 
Sbjct: 76   EVEVKVIRINDEED--KLVL-------SKKAVDADRAWEELQQKFESGETLEAEVADVVK 126

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1332
            G  GLVV +G  + G +            P S  +    +  S Y +G+ +  KV+EI  
Sbjct: 127  G--GLVVDLG--VRGFI------------PASLVERHYVEDFSDY-KGRKLSLKVIEIDP 169

Query: 1333 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1392
                     LS ++ LD  +                  E +  L P  +++G V+ +T  
Sbjct: 170  VKNKLI---LSRKAVLDEEADQRKQ-------------ETLAGLQPGQVMEGTVQRLTDF 213

Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
            G F+ +   +D  V +S L+   VE P +    G  V  +VL V+  ++R+ +++K  ++
Sbjct: 214  GAFVDIG-GVDGLVHVSELAWNRVEHPSEVLSEGDQVQVKVLKVDQQNERISLSIK--ET 270

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     +++    +  GDIV G +KR+ S+G F+ +
Sbjct: 271  QPGPWEKVS--EEIKAGDIVTGTVKRLVSFGAFVEV 304



 Score = 47.0 bits (110), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 140/364 (38%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G +TK+E H   V       G  P SEL      + S +   G  V+ +++      
Sbjct: 29  IVKGKVTKVEDHQVMVDVNYKFDGVIPISELSSLHVDKASDVLSEGDEVEVKVIRINDEE 88

Query: 648 RRINLSF-MMKPTRVSEDDLVKLGS---LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ++ LS   +   R  E+   K  S   L + V DVV    +VV +  +G+   ++   H
Sbjct: 89  DKLVLSKKAVDADRAWEELQQKFESGETLEAEVADVVK-GGLVVDLGVRGFIPASLVERH 147

Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
             +        K  +K       ++ +D   + L+LS K  L   A Q   +  + + P 
Sbjct: 148 YVEDFSDYKGRKLSLK-------VIEIDPVKNKLILSRKAVLDEEADQRKQETLAGLQPG 200

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V+ G V  + + G FV  +G + G    S+    +    S+    G  V+  +L V+ +
Sbjct: 201 QVMEGTVQRLTDFGAFVD-IGGVDGLVHVSELAWNRVEHPSEVLSEGDQVQVKVLKVDQQ 259

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             RI+LS+K++                             G   K  E    G ++ G V
Sbjct: 260 NERISLSIKET---------------------------QPGPWEKVSEEIKAGDIVTGTV 292

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVD 935
                FG  V  E +  V G +   Q++          +E G  ++  +LD+   ++ + 
Sbjct: 293 KRLVSFGAFV--EVYQGVEGLVHISQISRRHIATPSEELEEGQEVRVKVLDMQPEQKRIS 350

Query: 936 LSLK 939
           LS+K
Sbjct: 351 LSIK 354



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 180/430 (41%), Gaps = 80/430 (18%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G +V+ ++T+++  ++ +     F G I I+E++    +   ++ S    G  V  ++I 
Sbjct: 27   GDIVKGKVTKVEDHQVMVDVNYKFDGVIPISELSSLHVDKASDVLSE---GDEVEVKVIR 83

Query: 1124 KSNKPDM----KKSF----LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
             +++ D     KK+      WE      +    E G  L  E  DV  G  V        
Sbjct: 84   INDEEDKLVLSKKAVDADRAWE-----ELQQKFESGETLEAEVADVVKGGLVV------- 131

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
                       L  + FI  S  E   +++F    + G+ ++  V+ I+  K  L L  +
Sbjct: 132  ----------DLGVRGFIPASLVERHYVEDFSD--YKGRKLSLKVIEIDPVKNKLILSRK 179

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                 + D+  D         +  G ++ G + ++     G  V IG  + G VH +EL 
Sbjct: 180  ----AVLDEEADQRKQETLAGLQPGQVMEGTVQRLTDF--GAFVDIGG-VDGLVHVSELA 232

Query: 1296 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1355
               V  P         + LS   EG  V+ KVL++ +       + LS++ +        
Sbjct: 233  WNRVEHP--------SEVLS---EGDQVQVKVLKVDQQ---NERISLSIKET-------- 270

Query: 1356 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415
                      PG   +  E++    IV G VK + S G F+ + + ++  V +S +S  +
Sbjct: 271  ---------QPGPWEKVSEEIKAGDIVTGTVKRLVSFGAFVEVYQGVEGLVHISQISRRH 321

Query: 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS------NLHVG 1469
            + +P +E   G+ V  +VL ++P  KR+ +++K    +  ++ E+ NL       N+ +G
Sbjct: 322  IATPSEELEEGQEVRVKVLDMQPEQKRISLSIKEV-EQEETREELKNLDRNNSGMNVTLG 380

Query: 1470 DIVIGQIKRV 1479
            D+   Q++R+
Sbjct: 381  DVFGDQLRRL 390


>gi|339477878|ref|YP_004706698.1| 30S ribosomal protein S1 [Candidatus Moranella endobia PCIT]
 gi|338172429|gb|AEI74830.1| 30S ribosomal protein S1 [Candidatus Moranella endobia PCIT]
          Length = 556

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 157/353 (44%), Gaps = 35/353 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+++  + VKG V  +  +GA +   GGV  L  +  M+   +  P +   +G E+  +V
Sbjct: 187 SNLQESITVKGIVKNLTDYGAFIDL-GGVDGLLHITDMAWKRVKHPSEIVHIGEEITVKV 245

Query: 554 LGVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  V+   K+      +AI   Y E   RLI  G +T + ++GCFV    GV+G
Sbjct: 246 LKFDRERTRVSLGLKQLSEDPWIAIAKRYPEGI-RLI--GKVTNLTEYGCFVEIVEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----DDL 666
               SE+   +    PS + +VG++V+  ++      RRI+L   MK  + +      + 
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGKMVEVIVLDVDEERRRISLG--MKQCKGNPWQKFAET 360

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            K G  V G +  +T     V++   G   G + +  +A ++     ++   K G E   
Sbjct: 361 YKKGDRVEGKIKSITDFG--VFIGLDGGIDGLVHSSDIAWNVIGEEAVREY-KKGDEITA 417

Query: 727 -LLVLDNESSNLLLSAKYSLINSAQQLPSDASH----IH-PNSVVHGYVCNIIETGCFVR 780
            +L +D     + L  K        QL  D  +    +H   ++++G V  +   G  V 
Sbjct: 418 VVLQVDAGRERISLGIK--------QLVEDPLNHYLLLHKKGTIINGTVTAVDSKGATVE 469

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYY--VGQSVRSNILDVNSETGRITLSLK 831
            +G + G+ P S+A    R  L+      VG+++ +    ++ +   ++LS++
Sbjct: 470 LVGGIEGYLPSSEA---SRNHLNAMLLPSVGEAIEAICTSIDRKNRVVSLSVR 519



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 107/492 (21%), Positives = 188/492 (38%), Gaps = 88/492 (17%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP------HMSEFEI 536
           A  FE  + T  + +PG +++G V+++     IV    G+K+   +P       + E EI
Sbjct: 6   AQLFEEFLKT-IETRPGAIIRGTVVSIAKDVVIVD--AGLKSESTIPIEQFRNTLGELEI 62

Query: 537 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-ITHGWITK 595
            K G    V  + V    G   + +    K    +S L +  +Y +A   + I +G +  
Sbjct: 63  -KVGDYVDVALDAVEDGFG---ETLLSREKAKRYESWLMLEKAYEQAATVIGIINGKV-- 116

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
               G F    NG++ F P S + + P     +++  G+ ++ ++   I   ++ N   +
Sbjct: 117 ---KGGFTVEINGIRAFLPGSLVDVRP--VRDTLHLEGKDLEFQV---IKLDQKRNNVVV 168

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM- 714
            +   +  +       L+S + + +T   +V  +       G        D L H T M 
Sbjct: 169 SRRAVIESESSTDRDQLLSNLQESITVKGIVKNLT----DYGAFIDLGGVDGLLHITDMA 224

Query: 715 -------KSVIKPGYEFD-QLLVLDNESSNLLLSAKY----SLINSAQQLPSDASHIHPN 762
                    ++  G E   ++L  D E + + L  K       I  A++ P     I   
Sbjct: 225 WKRVKHPSEIVHIGEEITVKVLKFDRERTRVSLGLKQLSEDPWIAIAKRYPEGIRLI--- 281

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVN 820
               G V N+ E GCFV  +  + G    S+ +D    ++  SK   VG+ V   +LDV+
Sbjct: 282 ----GKVTNLTEYGCFVEIVEGVEGLVHVSE-MDWTNKNIHPSKVVNVGKMVEVIVLDVD 336

Query: 821 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
            E  RI+L +KQ  C                               K+ E +  G  +EG
Sbjct: 337 EERRRISLGMKQ--CKGNPWQ-------------------------KFAETYKKGDRVEG 369

Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV--------ESGSVIQAAILDVAKAER 932
           K+    DFGV +  +   D  G +    +A   +        + G  I A +L V     
Sbjct: 370 KIKSITDFGVFIGLDGGID--GLVHSSDIAWNVIGEEAVREYKKGDEITAVVLQVDAGRE 427

Query: 933 LVDLSLKTVFID 944
            + L +K +  D
Sbjct: 428 RISLGIKQLVED 439



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 123/321 (38%), Gaps = 37/321 (11%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           L  +QE + +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LSNLQESITVKGIVKNLTDYGAFIDLG--GVDGLLHITDMAWKRVKHPSEIVHIGEEITV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      LS DP             I+I    P G+ +  +V ++ E G
Sbjct: 244 KVLKFDRERTRVSLGLKQLSEDP------------WIAIAKRYPEGIRLIGKVTNLTEYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +  +    G V +  +  T    +     N  K V   +L VD   R + L +     
Sbjct: 292 CFVEIVEGVEGLVHVSEMDWTNKNIHPSKVVNVGKMVEVIVLDVDEERRRISLGMKQCKG 351

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
           NP+    +      K GD  +       D G+ + LD     +   + +  + + EE VR
Sbjct: 352 NPW----QKFAETYKKGDRVEGKIKSITDFGVFIGLDGGIDGLVHSSDIAWNVIGEEAVR 407

Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
           +  KK  E + V +++   R    L    L        +  H   K G ++ G V AVDS
Sbjct: 408 EY-KKGDEITAVVLQVDAGRERISLGIKQLVEDPLNHYLLLH---KKGTIINGTVTAVDS 463

Query: 512 FGAIVQFPGGVKALCPLPHMS 532
            GA V+  GG++   P    S
Sbjct: 464 KGATVELVGGIEGYLPSSEAS 484


>gi|403251339|ref|ZP_10917683.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
 gi|402915310|gb|EJX36289.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
          Length = 444

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 36/364 (9%)

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
           +A EG +   +D   G +V G V+ +D    ++      + + P   +S    V P +  
Sbjct: 19  AAIEGTIKNFND---GDLVSGIVVQIDREEVLLDIGYKTEGVIPSRELSIRHDVDPSELV 75

Query: 544 KVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           KVG  +   VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G 
Sbjct: 76  KVGDRVEALVLQKEDKEGRLILSKKRAQYEQAWGDVEGKKE-RDEVVT-GTVIEVVKGGL 133

Query: 602 FVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
            V    G++GF P S  E+       P    ++GQ V+CRI+      +++  SRR  L 
Sbjct: 134 IVDI--GLRGFLPASLVEMRRVRDLTP----YIGQQVECRIIELDKNRNNVVLSRRAFLE 187

Query: 654 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
                +R +  + ++ G + SGV+  +      V +   G   G +    L+  H++H +
Sbjct: 188 QSQSASRTTFLNQLQKGQVRSGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS 244

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYV 769
               V++ G E   ++L +D E   + LS K     + Q+ P  A +  H  N VV G V
Sbjct: 245 ---EVVEVGDEVTVEVLEVDFERERVSLSLK-----ATQEDPWQAFARTHTINQVVPGEV 296

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             ++  G F++    + G    S+  +       +   VG  +   I+D++ E  RI+LS
Sbjct: 297 TKLVPFGAFIKVFEGIEGLVHISELAERHVEIPEQVVQVGDKLFVKIIDIDLERRRISLS 356

Query: 830 LKQS 833
           LKQ+
Sbjct: 357 LKQA 360



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 147/370 (39%), Gaps = 36/370 (9%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI  +     D  +  G + +I++    +      +G  P  EL +    +PS +  VG 
Sbjct: 20  AIEGTIKNFNDGDLVSGIVVQIDREEVLLDIGYKTEGVIPSRELSIRHDVDPSELVKVGD 79

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV---KLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  ++       R+ LS        +  D+    +   +V+G V  V    ++V +  
Sbjct: 80  RVEALVLQKEDKEGRLILSKKRAQYEQAWGDVEGKKERDEVVTGTVIEVVKGGLIVDIGL 139

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINS-A 749
           +G+    +P    A  +E   V       G + + +++ LD   +N++LS +  L  S +
Sbjct: 140 RGF----LP----ASLVEMRRVRDLTPYIGQQVECRIIELDKNRNNVVLSRRAFLEQSQS 191

Query: 750 QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
               +  + +    V  G + +I+  G FV  LG + G    S+         S+   VG
Sbjct: 192 ASRTTFLNQLQKGQVRSGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 250

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +L+V+ E  R++LSLK +      A F + H + +     +      G+ +K  
Sbjct: 251 DEVTVEVLEVDFERERVSLSLKATQEDPWQA-FARTHTINQVVPGEVTKLVPFGAFIKVF 309

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
           EG      IEG VH       +    E         H ++    V+ G  +   I+D+  
Sbjct: 310 EG------IEGLVH-------ISELAER--------HVEIPEQVVQVGDKLFVKIIDIDL 348

Query: 930 AERLVDLSLK 939
             R + LSLK
Sbjct: 349 ERRRISLSLK 358


>gi|319403578|emb|CBI77160.1| 30S ribosomal protein S1 [Bartonella rochalimae ATCC BAA-1498]
          Length = 566

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 140/619 (22%), Positives = 244/619 (39%), Gaps = 106/619 (17%)

Query: 486  FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM---SEFEIVKP 539
            FE L+   F  +D+  G VVKG++IA++   AI+     V+   PL      S+   ++ 
Sbjct: 11   FETLLMESFQTNDLNEGSVVKGRIIAIEKDMAIIDAGLKVEGRIPLKEFGSKSKDGSLQI 70

Query: 540  GKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
            G + +V  E +   LG     I ++ +K   +     L     A  R+   G I   +  
Sbjct: 71   GDEVEVYIERIENALG----EIVLSREKARREESWIRLEEKFNAGTRV--EGIIFS-QVK 123

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFM 655
            G F    +G   F PRS++ + P  + + + H  Q+ +     R   +I  SRR  L   
Sbjct: 124  GGFTVDLDGAVAFLPRSQVDIRPIRDVAPLMHNAQLFEILKMDRRRGNIVVSRRAVLEES 183

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHA 711
                R      ++   +V G+V  +T     V +   G   G +    +A    +H    
Sbjct: 184  RAEQRSEIVQNLEENQIVEGIVKNITDYGAFVDL---GGIDGLLHVTDMAWRRINHPSEV 240

Query: 712  TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVH 766
              +   IK      Q++ ++ ++  + L  K        QL +D     +  +P    + 
Sbjct: 241  LTIGQTIKV-----QIIRINQDTHRISLGMK--------QLENDPWDNINTKYPVGKKIT 287

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V NI + G FV     + G    S+ +   +     K   + Q V   IL+++S   R
Sbjct: 288  GAVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNIHPGKLLSISQEVEVVILEIDSSKRR 347

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV---EGFIIGSVIEGKV 882
            I+L LKQ+                              SE  WV     + + S I G++
Sbjct: 348  ISLGLKQT------------------------------SENPWVAFANKYPVNSQITGEI 377

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLV 934
                +FG+ +  E   DV G +    L     G  V      G  +QA +LDV   +  +
Sbjct: 378  KNKTEFGLFIGLE--GDVDGMVHLSDLDWNRPGEQVIDIYNKGDTVQAVVLDVDVEKERI 435

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 994
             L +K +  D+ REA              AS +L    TV   V  + EN + + L E++
Sbjct: 436  SLGIKQLSSDKMREA-------------AASGELRKGATVTCEVIDINENGVGVKLIEHD 482

Query: 995  H--SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETS 1050
               +I    ++    ++ P++ F  GQ V A + A    +   +L + +KA  I+E + +
Sbjct: 483  LEVTIRRTDLARDRDEQRPER-FAIGQKVDAQITAFDKKNR--KLSVSIKALEIAEEKEA 539

Query: 1051 SSKRAKKKSSYDVGSLVQA 1069
             ++     S   +G ++ A
Sbjct: 540  VAQYGSTDSGASLGEILGA 558



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 13/123 (10%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L  N IV+G VKN+T  G F+ L   +D  + +++++   +  P +   IG+ + 
Sbjct: 190  EIVQNLEENQIVEGIVKNITDYGAFVDLG-GIDGLLHVTDMAWRRINHPSEVLTIGQTIK 248

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFI 1486
             +++ +   + R+ + +K        Q E +   N++    VG  + G +  +  YG F+
Sbjct: 249  VQIIRINQDTHRISLGMK--------QLENDPWDNINTKYPVGKKITGAVTNITDYGGFV 300

Query: 1487 TIE 1489
             IE
Sbjct: 301  EIE 303


>gi|381401288|ref|ZP_09926197.1| 30S ribosomal protein S1 [Kingella kingae PYKK081]
 gi|380833733|gb|EIC13592.1| 30S ribosomal protein S1 [Kingella kingae PYKK081]
          Length = 557

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 159/378 (42%), Gaps = 34/378 (8%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+A+  E       +++ G +VKG V  +  +GA V   GG+  L  +  ++   +  P
Sbjct: 172 VLEATLGEERKALMENLQEGTIVKGIVKNLTDYGAFVDL-GGIDGLLHITDLAWRRVKHP 230

Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  ++G E+  +VL      +R+++  K+        +   Y ++T RL   G ++ + 
Sbjct: 231 SEVLEMGQEVEAKVLKFDQDKQRVSLGLKQLGEDPWDGLARRYPQST-RLF--GKVSNLT 287

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           ++G FV    G++G    SE+   +    PS +  +G  V+  I+      RRI+L    
Sbjct: 288 EYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILDIDEDKRRISLGMKQ 347

Query: 657 ---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHA 711
               P +  E +  K G  + G V  +T     V++   G   G +   HL+D    E  
Sbjct: 348 CQSNPWKDFEANYSK-GDKIKGAVKSITDFG--VFIGLPGNIDGLV---HLSDLSWTESG 401

Query: 712 TVMKSVIKPGYEFDQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVV 765
                  K G E +  +L +D E   + L  K        QL  D      +     ++V
Sbjct: 402 EEAVRKYKKGEEVEAVVLAIDVEKERISLGIK--------QLEGDPFNNFLAMNDKGALV 453

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETG 824
            G V ++   G  +     + G+ P S+  D +R  DL+     G  V + I++V+ +  
Sbjct: 454 KGAVKSVEAKGAVIALADEVEGYLPASE-FDSERVEDLTTKLKEGDEVEAVIVNVDRKNR 512

Query: 825 RITLSLKQSCCSSTDASF 842
            I LS+K     + D + 
Sbjct: 513 SIKLSVKAKDAKANDEAL 530



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 27/255 (10%)

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
           G      N ++ F P S L + P  + S  +  G+ ++ +++      +++  SRR  L 
Sbjct: 117 GGLTVMINSIRAFLPGSLLDVRPIKDTS--HFEGKEIEFKVIKLDRKRNNVVVSRRAVLE 174

Query: 654 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
             +   R +  + ++ G++V G+V  +T     V +   G   G +    LA   ++H +
Sbjct: 175 ATLGEERKALMENLQEGTIVKGIVKNLTDYGAFVDL---GGIDGLLHITDLAWRRVKHPS 231

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSV-VHGYV 769
               V++ G E + ++L  D +   + L  K        + P D  +  +P S  + G V
Sbjct: 232 ---EVLEMGQEVEAKVLKFDQDKQRVSLGLK-----QLGEDPWDGLARRYPQSTRLFGKV 283

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRIT 827
            N+ E G FV     + G    S+ +D    ++  SK   +G  V   ILD++ +  RI+
Sbjct: 284 SNLTEYGAFVEIEQGIEGLVHVSE-MDWTNKNVHPSKVVQLGDEVEVMILDIDEDKRRIS 342

Query: 828 LSLKQSCCSSTDASF 842
           L +KQ C S+    F
Sbjct: 343 LGMKQ-CQSNPWKDF 356



 Score = 41.2 bits (95), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L    IV+G VKN+T  G F+ L   +D  + +++L+   V+ P +   +G+ V  +
Sbjct: 185  MENLQEGTIVKGIVKNLTDYGAFVDLG-GIDGLLHITDLAWRRVKHPSEVLEMGQEVEAK 243

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI-VIGQIKRVESYGLFITIE 1489
            VL  +   +RV + LK        +   + L+  +     + G++  +  YG F+ IE
Sbjct: 244  VLKFDQDKQRVSLGLK-----QLGEDPWDGLARRYPQSTRLFGKVSNLTEYGAFVEIE 296


>gi|242373783|ref|ZP_04819357.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W1]
 gi|242348520|gb|EES40122.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W1]
          Length = 399

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 146/355 (41%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 18  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIESPSEVVKVGDEVEAY 77

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 78  VTKIEFDEENDSGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 135

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 136 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 191

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 192 ASLLDSLSEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQSPEEVVSV 246

Query: 721 G-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 247 GDEVKVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 303

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+         S+    GQ V   IL ++ E  RI+LS+K + 
Sbjct: 304 EIAPAVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGIDEENERISLSIKATL 358



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 94/235 (40%), Gaps = 45/235 (19%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 20  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIESPSEVVKVGDEVEA 76

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     S  Y L  S +QL ++ S+      +  + V+   V  +++ G 
Sbjct: 77  YVTKIEFDEEND----SGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGL 130

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 131 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 186

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
            D           +K ++L S                G VI+GKV    +FG  +
Sbjct: 187 NDV----------KKASLLDSLSE-------------GDVIDGKVARLTNFGAFI 218


>gi|157964625|ref|YP_001499449.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
 gi|157844401|gb|ABV84902.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
          Length = 568

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 154/361 (42%), Gaps = 20/361 (5%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360

Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                P T+ +E++ V  G+++   +  +T   +  +V       G I    ++   +  
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
            ++KS  K G E + ++L ++ E   + L  K    N   ++   +      ++V   + 
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYHEI---SDEYKKGTIVKALIT 472

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            + + G  V    ++ GF  R++  D +     + +++ + + + ++ +   TGRI LS+
Sbjct: 473 EVKDEGLAVLLNNKVAGFIKRTELSDKKDEQKPEMFHIDEEIEAKVVSIEKSTGRILLSV 532

Query: 831 K 831
           K
Sbjct: 533 K 533



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 130/602 (21%), Positives = 242/602 (40%), Gaps = 103/602 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V    + ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +         + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKQMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                  K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + +   
Sbjct: 400  MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPY--- 454

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                         E S +      V A++  VK+  L + L   N   G+   ++ + +K
Sbjct: 455  ------------HEISDEYKKGTIVKALITEVKDEGLAVLL--NNKVAGFIKRTELSDKK 500

Query: 1010 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 1065
              QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G 
Sbjct: 501  DEQKPEMFHIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558

Query: 1066 LV 1067
            ++
Sbjct: 559  IL 560



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
            ++ EK  + L ++  Q+            N  T   E + VG  I   +  +   G+ V 
Sbjct: 348  VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V
Sbjct: 396  LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QV 442

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             L ++                   +P  + E  ++     IV+  +  V  +G  ++L+ 
Sbjct: 443  SLGIKQL-----------------SPNPYHEISDEYKKGTIVKALITEVKDEGLAVLLNN 485

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            K+   +  + LSD   E   + F I + +  +V+S+E  + R+ +++K 
Sbjct: 486  KVAGFIKRTELSDKKDEQKPEMFHIDEEIEAKVVSIEKSTGRILLSVKA 534


>gi|24213346|ref|NP_710827.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45658772|ref|YP_002858.1| 30S ribosomal protein S1 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|386073003|ref|YP_005987320.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           IPAV]
 gi|417761956|ref|ZP_12409952.1| S1 RNA binding domain protein [Leptospira interrogans str.
           2002000624]
 gi|417765584|ref|ZP_12413541.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Bulgarica str. Mallika]
 gi|417775249|ref|ZP_12423105.1| S1 RNA binding domain protein [Leptospira interrogans str.
           2002000621]
 gi|417786182|ref|ZP_12433878.1| S1 RNA binding domain protein [Leptospira interrogans str. C10069]
 gi|418673101|ref|ZP_13234426.1| S1 RNA binding domain protein [Leptospira interrogans str.
           2002000623]
 gi|418690062|ref|ZP_13251180.1| S1 RNA binding domain protein [Leptospira interrogans str. FPW2026]
 gi|418731199|ref|ZP_13289612.1| S1 RNA binding domain protein [Leptospira interrogans str. UI
           12758]
 gi|421084901|ref|ZP_15545756.1| S1 RNA binding domain protein [Leptospira santarosai str. HAI1594]
 gi|421102054|ref|ZP_15562664.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Icterohaemorrhagiae str. Verdun LP]
 gi|421123485|ref|ZP_15583765.1| S1 RNA binding domain protein [Leptospira interrogans str. Brem
           329]
 gi|421126787|ref|ZP_15587012.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Grippotyphosa str. 2006006986]
 gi|421133050|ref|ZP_15593206.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Grippotyphosa str. Andaman]
 gi|24194094|gb|AAN47845.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602016|gb|AAS71495.1| 30S ribosomal protein S1 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|353456792|gb|AER01337.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           IPAV]
 gi|400351943|gb|EJP04150.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Bulgarica str. Mallika]
 gi|400360785|gb|EJP16755.1| S1 RNA binding domain protein [Leptospira interrogans str. FPW2026]
 gi|409942145|gb|EKN87766.1| S1 RNA binding domain protein [Leptospira interrogans str.
           2002000624]
 gi|409950727|gb|EKO05250.1| S1 RNA binding domain protein [Leptospira interrogans str. C10069]
 gi|410022804|gb|EKO89573.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Grippotyphosa str. Andaman]
 gi|410343536|gb|EKO94767.1| S1 RNA binding domain protein [Leptospira interrogans str. Brem
           329]
 gi|410368199|gb|EKP23577.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Icterohaemorrhagiae str. Verdun LP]
 gi|410432294|gb|EKP76650.1| S1 RNA binding domain protein [Leptospira santarosai str. HAI1594]
 gi|410435642|gb|EKP84773.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Grippotyphosa str. 2006006986]
 gi|410574944|gb|EKQ37970.1| S1 RNA binding domain protein [Leptospira interrogans str.
           2002000621]
 gi|410579884|gb|EKQ47720.1| S1 RNA binding domain protein [Leptospira interrogans str.
           2002000623]
 gi|410774094|gb|EKR54113.1| S1 RNA binding domain protein [Leptospira interrogans str. UI
           12758]
 gi|456825990|gb|EMF74360.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Canicola str. LT1962]
          Length = 384

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++K GM V  KV  + +FG IV+  GGV AL P+   +  +  +  K+F+VG  L  RVL
Sbjct: 186 ELKEGMFVTCKVKTIQNFGLIVEMDGGVTALVPISEATYKKNPELEKEFQVGQTLRARVL 245

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            +  ++++  +T K  L K   A    + E     I  G I  ++  G FV+  +   G 
Sbjct: 246 RIDWENQKFALTVKDFL-KDPWAQTVPFKEGD---IVKGTIDSLKPFGVFVKLDDHFNGL 301

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            P  E G+      S  +  G+VV   +M   P  ++I+LS
Sbjct: 302 VPGRETGISNRVPLSQSFKPGEVVDVFVMEVNPEKKQISLS 342


>gi|244539188|dbj|BAH83231.1| 30S ribosomal protein S1 [Candidatus Ishikawaella capsulata Mpkobe]
          Length = 543

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 29/348 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ GM VKG V  +  +GA +   GG+  L  +  M+   +  P +   VG E+  ++L 
Sbjct: 189 IQEGMEVKGVVKNLTDYGAFIDL-GGIDGLLHITDMAWKRVKHPSEIVSVGNEIKVKILK 247

Query: 556 VKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +RI V+   K+      +A+   Y E T +LI  G +T I  +GCFV    GV+G  
Sbjct: 248 FDRERIRVSLGLKQMGEDPWVALAKRYPEKT-KLI--GRVTNITDYGCFVEIEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--G 670
             SE+   +    PS + ++G  V+  ++      RRI+L          +    K   G
Sbjct: 305 HISEMDWTNKNIHPSKVVNIGDKVEIIVLDIDEDRRRISLGLKQCKANPWQSFAKKYHKG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLL 728
             V G +  +T      + I  G   G     HL+D     +  ++V   K G E D ++
Sbjct: 365 DKVKGKIKSITD-----FGIFLGLEGGIDGLVHLSDISWAISGDEAVRKYKKGDEVDVII 419

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASH----IHPNSVVHGYVCNIIETGCFVRFLG 783
           + +D+E   + L  K        QL  D  +    ++  S+V G +  I      V+   
Sbjct: 420 LQVDSERERISLGIK--------QLSEDPFNNYISLNKGSLVTGVITAIEARVATVKLDD 471

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G    S+       D +    VG  +++  +  + ++ RI LSL+
Sbjct: 472 NIEGHLRISEFSKENIEDTNLAVSVGDMIKAKCIGYDRKSRRINLSLQ 519



 Score = 47.4 bits (111), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 11/164 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVL 554
           G  VKGK+ ++  FG  +   GG+  L    H+S+      G    +K+K G E+   +L
Sbjct: 364 GDKVKGKIKSITDFGIFLGLEGGIDGLV---HLSDISWAISGDEAVRKYKKGDEVDVIIL 420

Query: 555 GVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
            V S+R  ++   K L +      ++Y       +  G IT IE     V+  + ++G  
Sbjct: 421 QVDSERERISLGIKQLSEDPF---NNYISLNKGSLVTGVITAIEARVATVKLDDNIEGHL 477

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             SE   +   + +    VG ++K + +     SRRINLS   K
Sbjct: 478 RISEFSKENIEDTNLAVSVGDMIKAKCIGYDRKSRRINLSLQAK 521



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 102/474 (21%), Positives = 193/474 (40%), Gaps = 77/474 (16%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           PG +++G ++A+D    +V    G+K+   +P + +F+  +      VG E+   +  V+
Sbjct: 20  PGSIIRGVIVAIDKDFVVVDT--GLKSESSIP-IEQFKNAQQELDINVGDEIDVVLDAVE 76

Query: 558 SK--RITVTHKKTLVKSKLAILSSYAE--ATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
                  ++ +K    +   IL    E  AT   I +G +      G F    +G++ F 
Sbjct: 77  DGFGETLLSREKAKRHASWLILEKSHENAATVMGIINGKV-----KGGFTVELDGIRAFL 131

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLV 667
           P S + + P  +  +++  G+ ++ +++      +++  SR+  +       R    + +
Sbjct: 132 PGSLVDVRPIRD--TVHLEGKELEFKVIKLDQKRNNVVVSRKAVIESENSVERSQLLETI 189

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD- 725
           + G  V GVV  +T     + +   G   G +    +A   ++H + + SV   G E   
Sbjct: 190 QEGMEVKGVVKNLTDYGAFIDL---GGIDGLLHITDMAWKRVKHPSEIVSV---GNEIKV 243

Query: 726 QLLVLDNESSNLLLSAKY----SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           ++L  D E   + L  K       +  A++ P     I       G V NI + GCFV  
Sbjct: 244 KILKFDRERIRVSLGLKQMGEDPWVALAKRYPEKTKLI-------GRVTNITDYGCFVEI 296

Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
              + G    S+ +D    ++  SK   +G  V   +LD++ +  RI+L LKQ C ++  
Sbjct: 297 EEGVEGLVHISE-MDWTNKNIHPSKVVNIGDKVEIIVLDIDEDRRRISLGLKQ-CKANPW 354

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE---- 895
            SF +++              H G ++K            GK+    DFG+ +  E    
Sbjct: 355 QSFAKKY--------------HKGDKVK------------GKIKSITDFGIFLGLEGGID 388

Query: 896 ---EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
                SD+   I+  + A    + G  +   IL V      + L +K +  D F
Sbjct: 389 GLVHLSDISWAISGDE-AVRKYKKGDEVDVIILQVDSERERISLGIKQLSEDPF 441


>gi|350561176|ref|ZP_08930015.1| ribosomal protein S1 [Thioalkalivibrio thiocyanoxidans ARh 4]
 gi|349781283|gb|EGZ35591.1| ribosomal protein S1 [Thioalkalivibrio thiocyanoxidans ARh 4]
          Length = 557

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 147/366 (40%), Gaps = 33/366 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G+VVKG V  +  +GA +   GG+  L  +  M+   +  P     +G E+  +VL
Sbjct: 188 NLQEGIVVKGIVKNLTDYGAFLDL-GGIDGLLHITDMAWKRVKHPSDVVNIGDEVDVKVL 246

Query: 555 GVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               +R+ V+   K L +     ++       R+   G +T I  +GCFV   +GV+G  
Sbjct: 247 KFDRERMRVSLGLKQLGEDPWENIARRYPTGTRIF--GRVTNITDYGCFVEIEDGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KLG 670
             SE+   +    P     +G  V+  I+      RRI+L          ED       G
Sbjct: 305 HVSEMDWTNKNVNPGKAVAIGDEVEVMILDLDEERRRISLGMKQCQANPWEDFAANHNRG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             V G +  +T   V V     G   G     HL+D        +++   K G E +  +
Sbjct: 365 EKVRGTIKSITDFGVFV-----GLDGGIDGLIHLSDLSWQQPGEEAIRNFKKGDEVEAVV 419

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVRF 781
           L +D E   + L  K        QL  D      A H    S+V G V  +      V  
Sbjct: 420 LSVDPERERISLGLK--------QLDRDPFSSFVAEHAK-GSIVSGVVKEVDAKAAVVEL 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              + G   R+  +   R + ++T   VG  V +  + V+ +T  I+LS+K       +A
Sbjct: 471 ADGIDGIL-RAADISRDRVEDARTVLSVGDQVEAKFMGVDKKTRAISLSIKAKDVQE-EA 528

Query: 841 SFMQEH 846
             MQ++
Sbjct: 529 EIMQDY 534



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L   ++V+G VKN+T  G F+ L   +D  + +++++   V+ P     IG  V 
Sbjct: 184  ELLKNLQEGIVVKGIVKNLTDYGAFLDLG-GIDGLLHITDMAWKRVKHPSDVVNIGDEVD 242

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1489
             +VL  +    RV + LK        +    N++  +  G  + G++  +  YG F+ IE
Sbjct: 243  VKVLKFDRERMRVSLGLK-----QLGEDPWENIARRYPTGTRIFGRVTNITDYGCFVEIE 297

Query: 1490 N 1490
            +
Sbjct: 298  D 298


>gi|406997617|gb|EKE15647.1| RNA binding S1 protein [uncultured bacterium]
          Length = 447

 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 29/274 (10%)

Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDI-------PSTPVSTPAYVTISDVAEEEVRKLEK 455
           S + +GDI   +KV+  ++G GL++++       P + +S   Y  + D  + ++ +L K
Sbjct: 142 SKMTIGDII-STKVLDANKG-GLMVEVNGITGFLPVSQLSGEHYPRVEDGDKNKILELLK 199

Query: 456 KYKEGSCVRVRIL-GFRHLEGLATGILKASAF-EGLVFTHSDVKPGMVVKGKVIAVDSFG 513
           K   G  +RVRI+   +  E L      AS+  E  V +  DV  G +++G++  V  FG
Sbjct: 200 KII-GQEIRVRIIDADKDSEKLIVSERAASSEKEKEVISKLDV--GDIIEGEISGVVDFG 256

Query: 514 AIVQFPGGVK--------ALCPLPHMSEFE---IVKPGKKFKVGAELVFRVLGVKSKRIT 562
           A V+FP  +K         L  L H+SE     I  P    K G ++  +++G+   RI+
Sbjct: 257 AFVKFPSPIKNSAGNDGDNLEGLVHISELAWQLIENPRDIVKTGDKVRAKIIGIDDTRIS 316

Query: 563 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG-LD 621
           ++  K L K   + +    +  D  I  G + KI   G FV     + G A  SE   + 
Sbjct: 317 LSM-KALAKDPWSEIEKKYKVGD--IVEGKVDKINPFGSFVYLDKDIHGLAHVSEFQEVY 373

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           PG +   + + G + K +I+S    S R+ L  +
Sbjct: 374 PGKKMDEVLYAGGMFKWKILSIESKSHRMGLMLV 407



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 160/371 (43%), Gaps = 74/371 (19%)

Query: 745  LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL-TGFAPRSKAVDGQRADLS 803
            L NS  ++P  A  +   ++VH      I +   +  LG L TG     +  DG    ++
Sbjct: 52   LKNSPVEIPQ-AGDVLEGTIVH------ISSNSILLDLGPLGTGIVMGKEIKDGL---VT 101

Query: 804  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
            +   VG  V + ++++ +E G I LS+++       AS+ +    L+ K+          
Sbjct: 102  EKIKVGDKVSATLVEIENEDGLIELSIRE-------ASYERAWDDLDSKMT--------- 145

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA---TVESGSVI 920
                      IG +I  KV ++N  G++V   E + + GF+   QL+G     VE G   
Sbjct: 146  ----------IGDIISTKVLDANKGGLMV---EVNGITGFLPVSQLSGEHYPRVEDGD-- 190

Query: 921  QAAILDVAKAERLVDLSLKTVFIDRFREAN----SNRQAQKKKRKREASK-DLG--VHQT 973
            +  IL++ K  +++   ++   ID  +++     S R A  +K K   SK D+G  +   
Sbjct: 191  KNKILELLK--KIIGQEIRVRIIDADKDSEKLIVSERAASSEKEKEVISKLDVGDIIEGE 248

Query: 974  VNAIVEIVKENYLVLSLPEYNHS-------IGYASVSDYNTQ--KFPQKQFLNGQSVIAT 1024
            ++ +V+     ++    P  N +        G   +S+   Q  + P+     G  V A 
Sbjct: 249  ISGVVDF--GAFVKFPSPIKNSAGNDGDNLEGLVHISELAWQLIENPRDIVKTGDKVRAK 306

Query: 1025 VMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFG 1084
            ++ +  +    R+ L +KA+++   S  ++      Y VG +V+ ++ +I P    +   
Sbjct: 307  IIGIDDT----RISLSMKALAKDPWSEIEK-----KYKVGDIVEGKVDKINPFGSFVYLD 357

Query: 1085 IGFHGRIHITE 1095
               HG  H++E
Sbjct: 358  KDIHGLAHVSE 368



 Score = 40.0 bits (92), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 24/257 (9%)

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFE-GLVFTHSDVKPGMVVKGKVIAVDSFG 513
           +K K G  V   ++   + +GL    ++ +++E       S +  G ++  KV+  +  G
Sbjct: 102 EKIKVGDKVSATLVEIENEDGLIELSIREASYERAWDDLDSKMTIGDIISTKVLDANKGG 161

Query: 514 AIVQFPGGVKALCPLPHMS--EFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHK---K 567
            +V+   G+    P+  +S   +  V+ G K K+  EL+ +++G + + RI    K   K
Sbjct: 162 LMVEV-NGITGFLPVSQLSGEHYPRVEDGDKNKI-LELLKKIIGQEIRVRIIDADKDSEK 219

Query: 568 TLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRF-----------YNGVQGF 612
            +V  + A      E   +L    I  G I+ +   G FV+F            + ++G 
Sbjct: 220 LIVSERAASSEKEKEVISKLDVGDIIEGEISGVVDFGAFVKFPSPIKNSAGNDGDNLEGL 279

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
              SEL       P  +   G  V+ +I+        +++  + K      +   K+G +
Sbjct: 280 VHISELAWQLIENPRDIVKTGDKVRAKIIGIDDTRISLSMKALAKDPWSEIEKKYKVGDI 339

Query: 673 VSGVVDVVTPNAVVVYV 689
           V G VD + P    VY+
Sbjct: 340 VEGKVDKINPFGSFVYL 356


>gi|312882500|ref|ZP_07742241.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369900|gb|EFP97411.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 556

 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 141/347 (40%), Gaps = 26/347 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL 
Sbjct: 189 LQEGAEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIQVKVLK 247

Query: 556 VKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +R  V+   K+      +AI   Y E        G +T +  +GCFV    GV+G  
Sbjct: 248 FDRERTRVSLGLKQLGEDPWVAIAKRYPEGHK---LSGRVTNLTDYGCFVEIEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKL 669
             SE+   +    PS + +VG  V+  ++      RRI+L        P +   +   K 
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAK- 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  V+G +  +T   + +     G   G     HL+D   + T  ++V   K G E    
Sbjct: 364 GDKVTGKIKSITDFGIFI-----GLEGGIDGLVHLSDISWNVTGEEAVREYKKGDEISAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +L +D E   + L  K       +  P +A  S      +V+G V  +   G  +     
Sbjct: 419 VLAVDAERERISLGVK-----QMENDPFNAYVSEKKKGVLVNGTVTAVDAKGATIELEEG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   S+    +  D S    VG S+ +    V+ +   I LS+K
Sbjct: 474 VEGYIRASEVSRDRVEDASLILTVGDSIEAKFTGVDRKNRVINLSVK 520



 Score = 48.1 bits (113), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 107/489 (21%), Positives = 197/489 (40%), Gaps = 78/489 (15%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           A  FE    + ++ + G +VKG V+A+++    V    G+K+   +P   +F+      +
Sbjct: 6   AQLFEEF-LSETEFQQGTIVKGTVVAIEN--GFVLVDAGLKSESAIP-AEQFKNASGDLE 61

Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            +VG+E+   +  V+       ++ +K        +L    E  + ++    I   +  G
Sbjct: 62  VEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKACEEAETVVG---IINGKVKG 118

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMM 656
            F    NG++ F P S + + P  + + + +     +V+K  +  +++  SRR   + + 
Sbjct: 119 GFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR---AVIE 175

Query: 657 KPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
               V  D+L++    G+ V G+V  +T     V +   G   G +    +A   ++H +
Sbjct: 176 SENSVERDELLETLQEGAEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS 232

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVH 766
               ++  G E   ++L  D E + + L  K        QL  D     A        + 
Sbjct: 233 ---EIVNVGDEIQVKVLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGHKLS 281

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 824
           G V N+ + GCFV     + G    S+ +D    ++  SK   VG  V   +L+++ E  
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVLEIDEERR 340

Query: 825 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
           RI+L LKQ C ++   SF           A  Q+                G  + GK+  
Sbjct: 341 RISLGLKQ-CKANPWQSF-----------AEAQAK---------------GDKVTGKIKS 373

Query: 885 SNDFGVVVSFE-------EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
             DFG+ +  E         SD+   +T  + A    + G  I A +L V      + L 
Sbjct: 374 ITDFGIFIGLEGGIDGLVHLSDISWNVTGEE-AVREYKKGDEISAVVLAVDAERERISLG 432

Query: 938 LKTVFIDRF 946
           +K +  D F
Sbjct: 433 VKQMENDPF 441



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 136/352 (38%), Gaps = 45/352 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LET+QEG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +Q 
Sbjct: 186 LETLQEGAEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEIQV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  +S RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGHKLSGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N   +V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351

Query: 392 NPY--LLHNRAPPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      +A    V  K+  I D    + ++ G+  L+ +          ++ +   E
Sbjct: 352 NPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSD--------ISWNVTGE 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK  E S V + +   R    L    ++   F   V   S+ K G++V G V 
Sbjct: 404 EAVREY-KKGDEISAVVLAVDAERERISLGVKQMENDPFNAYV---SEKKKGVLVNGTVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           AVD+ GA ++   GV+       +S   +        VG  +  +  GV  K
Sbjct: 460 AVDAKGATIELEEGVEGYIRASEVSRDRVEDASLILTVGDSIEAKFTGVDRK 511


>gi|456982499|gb|EMG19088.1| S1 RNA binding domain protein [Leptospira interrogans serovar
           Copenhageni str. LT2050]
          Length = 362

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++K GM V  KV  + +FG IV+  GGV AL P+   +  +  +  K+F+VG  L  RVL
Sbjct: 164 ELKEGMFVTCKVKTIQNFGLIVEMDGGVTALVPISEATYKKNPELEKEFQVGQTLRARVL 223

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            +  ++++  +T K  L K   A    + E     I  G I  ++  G FV+  +   G 
Sbjct: 224 RIDWENQKFALTVKDFL-KDPWAQTVPFKEGD---IVKGTIDSLKPFGVFVKLDDHFNGL 279

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            P  E G+      S  +  G+VV   +M   P  ++I+LS
Sbjct: 280 VPGRETGISNRVPLSQSFKPGEVVDVFVMEVNPEKKQISLS 320


>gi|334705228|ref|ZP_08521094.1| 30S ribosomal protein S1 [Aeromonas caviae Ae398]
          Length = 556

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLQEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKV 245

Query: 554 LGVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  V+   K+      +AI   Y E T RL   G +T +  +GCFV    GV+G
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPETT-RL--SGRVTNLTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    PS + +VG VV   ++      RRI+L        P ++  +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDVVDVMVLDIDEERRRISLGLKQCKSNPWQLFAETHA 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   +    ++V   K G E +
Sbjct: 363 K-GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  SD       ++V G V  +   G  +     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLSDNK---KGAIVKGKVTEVDAKGAVIELADG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   S A   +  D +    VG  V +  + V+ +   ++LS++
Sbjct: 474 VEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 20/219 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           K++ ++    TH+    G  V GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KSNPWQLFAETHA---KGDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNNQGE 403

Query: 541 ---KKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
              ++FK G E+   VL V  + +RI++  K+         LS   +     I  G +T+
Sbjct: 404 EAVREFKKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGA---IVKGKVTE 460

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++  G  +   +GV+G+   S+   D   + + +  VG  V+ + M     +R ++LS  
Sbjct: 461 VDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV-VYVIAKG 693
            K      D+ V + SL +   +VV  NA++  +  AKG
Sbjct: 521 AKD---EADERVAIDSL-NQQEEVVFSNAMMEAFKAAKG 555



 Score = 40.8 bits (94), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G +K++T  G FI L   +D  V LS++S +   E   +EF  G  +   VL V+P  
Sbjct: 367  VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIEAVVLQVDPER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +    ++     LS+   G IV G++  V++ G  I +
Sbjct: 427  ERISLGVKQIEEDPFNKY----LSDNKKGAIVKGKVTEVDAKGAVIEL 470



 Score = 40.4 bits (93), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 392 NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+ L    H +      K+  I D    + +D G+  L+ +          ++ ++  E
Sbjct: 352 NPWQLFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNNQGE 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK  E   V +++   R    L    ++   F   +   SD K G +VKGKV 
Sbjct: 404 EAVREF-KKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYL---SDNKKGAIVKGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            VD+ GA+++   GV+        +   +        VG E+  + +GV  K  TV+
Sbjct: 460 EVDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVS 516


>gi|117617800|ref|YP_856344.1| 30S ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559207|gb|ABK36155.1| ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 556

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLQEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKV 245

Query: 554 LGVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  V+   K+      +AI   Y E T RL   G +T +  +GCFV    GV+G
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPETT-RL--SGRVTNLTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    PS + +VG VV   ++      RRI+L        P ++  +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDVVDVMVLDIDEERRRISLGLKQCKSNPWQLFAETHA 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   +    ++V   K G E +
Sbjct: 363 K-GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  SD       ++V G V  +   G  +     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLSDN---KKGAIVKGKVTEVDAKGAVIELADG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   S A   +  D +    VG  V +  + V+ +   ++LS++
Sbjct: 474 VEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520



 Score = 47.4 bits (111), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 20/219 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           K++ ++    TH+    G  V GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KSNPWQLFAETHA---KGDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNNQGE 403

Query: 541 ---KKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
              ++FK G E+   VL V  + +RI++  K+         LS   +     I  G +T+
Sbjct: 404 EAVREFKKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGA---IVKGKVTE 460

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++  G  +   +GV+G+   S+   D   + + +  VG  V+ + M     +R ++LS  
Sbjct: 461 VDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV-VYVIAKG 693
            K      D+ V + SL +   +VV  NA+   +  AKG
Sbjct: 521 AKD---EADERVAIDSL-NQQEEVVFSNAMAEAFKAAKG 555



 Score = 40.8 bits (94), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G +K++T  G FI L   +D  V LS++S +   E   +EF  G  +   VL V+P  
Sbjct: 367  VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIEAVVLQVDPER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +    ++     LS+   G IV G++  V++ G  I +
Sbjct: 427  ERISLGVKQIEEDPFNKY----LSDNKKGAIVKGKVTEVDAKGAVIEL 470



 Score = 40.4 bits (93), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 392 NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+ L    H +      K+  I D    + +D G+  L+ +          ++ ++  E
Sbjct: 352 NPWQLFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNNQGE 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK  E   V +++   R    L    ++   F   +   SD K G +VKGKV 
Sbjct: 404 EAVREF-KKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYL---SDNKKGAIVKGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            VD+ GA+++   GV+        +   +        VG E+  + +GV  K  TV+
Sbjct: 460 EVDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVS 516


>gi|223043234|ref|ZP_03613281.1| putative 30S ribosomal protein S1 homolog [Staphylococcus capitis
           SK14]
 gi|417907759|ref|ZP_12551526.1| putative ribosomal protein S1 [Staphylococcus capitis VCU116]
 gi|222443445|gb|EEE49543.1| putative 30S ribosomal protein S1 homolog [Staphylococcus capitis
           SK14]
 gi|341594846|gb|EGS37524.1| putative ribosomal protein S1 [Staphylococcus capitis VCU116]
          Length = 392

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 146/355 (41%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEKSYEFLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
                    G ++ G V  +T     + +   G   G +    L+ +H+E    + SV  
Sbjct: 185 ASLLDSLSEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSHEHVESPEQVVSVGD 241

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
                 + +  D+E   + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 242 NVKVKVKSVEKDSE--RISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+         S+    GQ V   IL ++ E  RI+LS+K + 
Sbjct: 297 EIAPAVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGIDEENERISLSIKATL 351



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 103/259 (39%), Gaps = 48/259 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     S  Y L  S +QL ++ S+      +  + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----SGAYIL--SKRQLETEKSYEFLQEKLDNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D           +K ++L S                G VI+GKV    +FG  +     
Sbjct: 180 NDV----------KKASLLDSLSE-------------GDVIDGKVARLTNFGAFIDI--- 213

Query: 898 SDVYGFITHHQLAGATVES 916
             V G +   +L+   VES
Sbjct: 214 GGVDGLVHVSELSHEHVES 232


>gi|411009665|ref|ZP_11385994.1| 30S ribosomal protein S1 [Aeromonas aquariorum AAK1]
 gi|423196292|ref|ZP_17182875.1| 30S ribosomal protein S1 [Aeromonas hydrophila SSU]
 gi|404632516|gb|EKB29121.1| 30S ribosomal protein S1 [Aeromonas hydrophila SSU]
          Length = 556

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLQEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKV 245

Query: 554 LGVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  V+   K+      +AI   Y E T RL   G +T +  +GCFV    GV+G
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPETT-RL--SGRVTNLTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    PS + +VG VV   ++      RRI+L        P ++  +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDVVDVMVLDIDEERRRISLGLKQCKSNPWQLFAETHA 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   +    ++V   K G E +
Sbjct: 363 K-GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  SD       ++V G V  +   G  +     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLSDNK---KGAIVKGKVTEVDAKGAVIELADG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   S A   +  D +    VG  V +  + V+ +   ++LS++
Sbjct: 474 VEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520



 Score = 47.4 bits (111), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 18/194 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           K++ ++    TH+    G  V GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KSNPWQLFAETHA---KGDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNNQGE 403

Query: 541 ---KKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
              ++FK G E+   VL V  + +RI++  K+         LS   +     I  G +T+
Sbjct: 404 EAVREFKKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGA---IVKGKVTE 460

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++  G  +   +GV+G+   S+   D   + + +  VG  V+ + M     +R ++LS  
Sbjct: 461 VDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520

Query: 656 MK---PTRVSEDDL 666
            K     RV+ D+L
Sbjct: 521 AKDEADERVAIDNL 534



 Score = 40.8 bits (94), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G +K++T  G FI L   +D  V LS++S +   E   +EF  G  +   VL V+P  
Sbjct: 367  VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIEAVVLQVDPER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +    ++     LS+   G IV G++  V++ G  I +
Sbjct: 427  ERISLGVKQIEEDPFNKY----LSDNKKGAIVKGKVTEVDAKGAVIEL 470



 Score = 40.4 bits (93), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 392 NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+ L    H +      K+  I D    + +D G+  L+ +          ++ ++  E
Sbjct: 352 NPWQLFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNNQGE 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK  E   V +++   R    L    ++   F   +   SD K G +VKGKV 
Sbjct: 404 EAVREF-KKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYL---SDNKKGAIVKGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            VD+ GA+++   GV+        +   +        VG E+  + +GV  K  TV+
Sbjct: 460 EVDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVS 516


>gi|294012140|ref|YP_003545600.1| ribosomal protein S1 [Sphingobium japonicum UT26S]
 gi|390169458|ref|ZP_10221394.1| 30S ribosomal protein S1 [Sphingobium indicum B90A]
 gi|292675470|dbj|BAI96988.1| ribosomal protein S1 [Sphingobium japonicum UT26S]
 gi|389587955|gb|EIM66014.1| 30S ribosomal protein S1 [Sphingobium indicum B90A]
          Length = 570

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 176/436 (40%), Gaps = 60/436 (13%)

Query: 419 VDRGLGLLLDIPSTPVSTP---AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           +D GL     +P    + P   A + + D  E  V ++E  + E    R R       + 
Sbjct: 46  IDVGLKSEGRVPLREFAAPGQKAELKVGDEVEVYVDRVENAHGEAMLSRDRARREAAWDK 105

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF- 534
           L +   + +  EG++F          VKG    VD  GA+   PG    + P+  ++   
Sbjct: 106 LESEFTENARVEGVIFGR--------VKGG-FTVDLDGAVAFLPGSQVDIRPVRDVTPLM 156

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHK----KTLVKSKLAILSSYAEATDRLI 588
           +I +P           F++L +  +R  I V+ +    +T  + +  ++ + AE     I
Sbjct: 157 DIPQP-----------FQILKMDRRRGNIVVSRRAILEETRAEQRSGLIQTLAEGQ---I 202

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G +  I  +G FV    G+ G    ++L       P+ M ++G  V+ +I+     ++
Sbjct: 203 IEGVVKNITDYGAFVDL-GGIDGLLHVTDLSYKRINHPNEMINIGDTVRVQIIRINRDTQ 261

Query: 649 RINLSFMMKPTRVSEDDLVK--LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
           RI+L      +   E    K  +G+ +SG V  +T     V +          P      
Sbjct: 262 RISLGMKQLESDPWEGASAKYPVGAKLSGRVTNITEYGAFVELE---------PGIEGLV 312

Query: 707 HLEHATVMKSVIKPG------YEFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSDA-SH 758
           H+   +  K  + PG       E D + L +D E   + L  K      AQ  P D+ + 
Sbjct: 313 HVSEMSWTKKNVHPGKIVSTSQEVDVIVLEVDPEKRRISLGLK-----QAQNNPWDSFAE 367

Query: 759 IHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNI 816
            HP  S V G V N  E G F+   G + G    S    G    D    +  G++V++ +
Sbjct: 368 RHPIGSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWGISGEDALALHRKGETVQAVV 427

Query: 817 LDVNSETGRITLSLKQ 832
           LD++ E  RI+L +KQ
Sbjct: 428 LDIDVEKERISLGMKQ 443



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 132/561 (23%), Positives = 217/561 (38%), Gaps = 98/561 (17%)

Query: 499  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGV 556
            G VVKG V  +++  A++    G+K+   +P + EF    PG+K   KVG E+   V  V
Sbjct: 29   GRVVKGTVTGIENDMALIDV--GLKSEGRVP-LREF--AAPGQKAELKVGDEVEVYVDRV 83

Query: 557  KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            ++        +   + + A     +E T+     G I    K G F    +G   F P S
Sbjct: 84   ENAHGEAMLSRDRARREAAWDKLESEFTENARVEGVIFGRVK-GGFTVDLDGAVAFLPGS 142

Query: 617  ELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
            ++ + P  + + +  + Q  +     R   +I  SRR  L       R      +  G +
Sbjct: 143  QVDIRPVRDVTPLMDIPQPFQILKMDRRRGNIVVSRRAILEETRAEQRSGLIQTLAEGQI 202

Query: 673  VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--KSVIKPGYEFD----- 725
            + GVV  +T     V +       G I      D L H T +  K +  P    +     
Sbjct: 203  IEGVVKNITDYGAFVDL-------GGI------DGLLHVTDLSYKRINHPNEMINIGDTV 249

Query: 726  --QLLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHP-NSVVHGYVCNIIETGCF 778
              Q++ ++ ++  + L  K        QL SD    AS  +P  + + G V NI E G F
Sbjct: 250  RVQIIRINRDTQRISLGMK--------QLESDPWEGASAKYPVGAKLSGRVTNITEYGAF 301

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V     + G    S+ +   +     K     Q V   +L+V+ E  RI+L LKQ+  + 
Sbjct: 302  VELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVIVLEVDPEKRRISLGLKQAQNNP 361

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
             D SF + H                           IGS +EG+V  + +FG+ +  +  
Sbjct: 362  WD-SFAERH--------------------------PIGSTVEGEVKNATEFGLFIGLD-- 392

Query: 898  SDVYGFITHHQLA-GATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             DV G +    +A G + E        G  +QA +LD+   +  + L +K +        
Sbjct: 393  GDVDGMVHMSDIAWGISGEDALALHRKGETVQAVVLDIDVEKERISLGMKQL-------- 444

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
               R          A+  L  +QTV   V  V++  L +   E + + G+   SD    +
Sbjct: 445  --ERGGPAAGGTTAAAAGLNKNQTVTVTVLEVRDGGLEVQAGE-DGATGFIKRSDLGRDR 501

Query: 1010 FPQK--QFLNGQSVIATVMAL 1028
              Q+  +F  GQ   A V   
Sbjct: 502  DEQRPERFQIGQKFDAMVTGF 522



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            I+ L+   I++G VKN+T  G F+ L   +D  + +++LS   +  P +   IG  V  +
Sbjct: 194  IQTLAEGQIIEGVVKNITDYGAFVDLG-GIDGLLHVTDLSYKRINHPNEMINIGDTVRVQ 252

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            ++ +   ++R+ + +K  +S     +     +   VG  + G++  +  YG F+ +E
Sbjct: 253  IIRINRDTQRISLGMKQLESDPWEGAS----AKYPVGAKLSGRVTNITEYGAFVELE 305


>gi|146329586|ref|YP_001209043.1| 30S ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
 gi|146233056|gb|ABQ14034.1| ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
          Length = 558

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 175/432 (40%), Gaps = 50/432 (11%)

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
           G L+D+   PV  PA V   ++ E ++ KL++K       R  ++   +         KA
Sbjct: 134 GSLVDV--RPVKDPAIVEGKEI-EFKIIKLDQKRNNIVVSRRAVIEHEY---------KA 181

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
              E L     +++ G VVK  V  +  +GA +   GGV  L  +  M+   I  P +  
Sbjct: 182 EREEVL----QNLQEGDVVKAVVKNLTDYGAFLDL-GGVDGLLHITDMAWKRIKYPSEVV 236

Query: 544 KVGAELVFRVLGVKSKRITVTHK-KTLVKSKLA-ILSSYAEATDRLITHGWITKIEKHGC 601
            +G E+  +VL    +R  V+   K L +     I   Y   T      G +T I  +G 
Sbjct: 237 NIGDEVEVKVLKFDRERARVSLGLKQLGEDPWGDIAERYPVNTQ---ASGRVTNIADYGA 293

Query: 602 FVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---K 657
           FV   +GV+G    SE+   +    P     VGQ V+  I+      RRI+L        
Sbjct: 294 FVEIEDGVEGLVHVSEMDWTNKNVNPRKFVAVGQEVEVMILDVDSERRRISLGMKQCQSN 353

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMK 715
           P +  E +  K G  + G +  +T   + +     G   G     HL+D    E+     
Sbjct: 354 PWQEFEKNYNK-GERIKGQIKSITDFGIFI-----GLPGGIDGLVHLSDLSWDENNEEAV 407

Query: 716 SVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGY 768
              + G E + +++ ++ +   + L  K        QL  D      A+H H  SVV G 
Sbjct: 408 RAYQKGQEVETIILGIEADRERISLGIK--------QLSQDVFSQYIAAHGH-GSVVSGK 458

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           +  + E    V     + G    ++A   +  DL+K + VG  + + +L+++ +   I L
Sbjct: 459 IVELDERQATVNLAEGVNGVLRAAEAAIERVEDLTKLFAVGDEIEAKVLNIDRKHKSIAL 518

Query: 829 SLKQSCCSSTDA 840
           S++    +   A
Sbjct: 519 SIRAKDVAEEKA 530



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 147/379 (38%), Gaps = 55/379 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSGIDVKP 276
           L+ +QEG V+ A VK++ D+G  L  G     G L   ++A           N G +V+ 
Sbjct: 187 LQNLQEGDVVKAVVKNLTDYGAFLDLG--GVDGLLHITDMAWKRIKYPSEVVNIGDEVEV 244

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            +L        DR R  V L        K + +D  G   +        S RV +I + G
Sbjct: 245 KVL------KFDRERARVSLG------LKQLGEDPWGDIAERYPVNTQASGRVTNIADYG 292

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    N +      ++V   IL VD   R + L +     
Sbjct: 293 AFVEIEDGVEGLVHVSEMDWTNKNVNPRKFVAVGQEVEVMILDVDSERRRISLGMKQCQS 352

Query: 392 NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA- 446
           NP+      +N+      ++  I D           G+ + +P         V +SD++ 
Sbjct: 353 NPWQEFEKNYNKGERIKGQIKSITD----------FGIFIGLPG---GIDGLVHLSDLSW 399

Query: 447 EEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVK 503
           +E   +  + Y++G  V   ILG     E ++ GI  L    F   +  H     G VV 
Sbjct: 400 DENNEEAVRAYQKGQEVETIILGIEADRERISLGIKQLSQDVFSQYIAAHG---HGSVVS 456

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
           GK++ +D   A V    GV  +      +   +    K F VG E+  +VL +  K K I
Sbjct: 457 GKIVELDERQATVNLAEGVNGVLRAAEAAIERVEDLTKLFAVGDEIEAKVLNIDRKHKSI 516

Query: 562 TVTHKKTLVKSKLAILSSY 580
            ++ +   V  + A++  Y
Sbjct: 517 ALSIRAKDVAEEKAVIQDY 535



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 163/385 (42%), Gaps = 37/385 (9%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE---IVKP 539
           A  FE  + T +++KPG ++K +V+ +     ++      +   P+    + +    ++ 
Sbjct: 7   AELFEKSIET-TELKPGAIIKAEVVQIGKDFVVLNAGLKSEGFIPVEQFCDEQGTLTIQV 65

Query: 540 GKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           G K +V  E +    G       ++H+K        IL   A+     I  G ++   K 
Sbjct: 66  GDKVEVALEALENGYG----ETQISHEKAQRIRTWEILE--AKFASEEIIKGIVSGRVK- 118

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
           G F     GV+ F P S + + P  +P+ +   G+ ++ +I+      ++I  SRR  + 
Sbjct: 119 GGFTVDVEGVKAFLPGSLVDVRPVKDPAIVE--GKEIEFKIIKLDQKRNNIVVSRRAVIE 176

Query: 654 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHAT 712
              K  R      ++ G +V  VV  +T     + +   G   G +   H+ D   +   
Sbjct: 177 HEYKAEREEVLQNLQEGDVVKAVVKNLTDYGAFLDL---GGVDGLL---HITDMAWKRIK 230

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVC 770
               V+  G E + ++L  D E + + L  K       +    D +  +P N+   G V 
Sbjct: 231 YPSEVVNIGDEVEVKVLKFDRERARVSLGLK----QLGEDPWGDIAERYPVNTQASGRVT 286

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITL 828
           NI + G FV     + G    S+ +D    +++  K   VGQ V   ILDV+SE  RI+L
Sbjct: 287 NIADYGAFVEIEDGVEGLVHVSE-MDWTNKNVNPRKFVAVGQEVEVMILDVDSERRRISL 345

Query: 829 SLKQSCCSSTDASFMQEHFLLEEKI 853
            +KQ  C S      ++++   E+I
Sbjct: 346 GMKQ--CQSNPWQEFEKNYNKGERI 368


>gi|189345892|ref|YP_001942421.1| 30S ribosomal protein S1 [Chlorobium limicola DSM 245]
 gi|189340039|gb|ACD89442.1| RNA binding S1 domain protein [Chlorobium limicola DSM 245]
          Length = 586

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 42/355 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +  ++   +   V
Sbjct: 213 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVV 271

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           +G    +KR+++  K+        I   Y   +     +G +  I  +G FV    G++G
Sbjct: 272 VGFDENTKRVSLGMKQLESHPWENIELKYPVGSK---ANGRVVSITDYGAFVEIEKGIEG 328

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               SE+      + P     +GQ V+C I++      +++LS      RV+ED  + L 
Sbjct: 329 LVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKEHTKLSLSM----KRVNEDPWIALS 384

Query: 670 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
                 SL  G V  +T   V V + A     G     H++D      + H +    ++K
Sbjct: 385 EKYIENSLHKGTVSNITDFGVFVELEA-----GVDGLVHISDLSWTKKIRHPS---ELVK 436

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH----GYVCNIIE 774
              E + ++L  D  +  + L  K       Q  P           V     G +  IIE
Sbjct: 437 KNQELEVKVLKFDVNARRIALGHK-------QINPDPWDEFEQKYAVGAETPGNISQIIE 489

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            G  V   G + GF P S  + G   D+  ++ V   +   +++ + E  RI LS
Sbjct: 490 KGVIVILPGDVDGFVPVSHLLQGGVKDIHSSFAVDNELPLRVIEFDKENKRIILS 544



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 34/196 (17%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           ++I    V+ G V NI + G FV  LG L G    +    G+    S+   + Q ++  +
Sbjct: 213 ANIKVGMVLEGTVKNITDFGIFVD-LGGLDGLVHITDITWGRINHPSEVVELDQPIKVVV 271

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           +  +  T R++L +KQ                       L+S      ELK    + +GS
Sbjct: 272 VGFDENTKRVSLGMKQ-----------------------LESHPWENIELK----YPVGS 304

Query: 877 VIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKA 930
              G+V    D+G  V  E+      H     +  H +  G  V  G  ++  IL++ K 
Sbjct: 305 KANGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKE 364

Query: 931 ERLVDLSLKTVFIDRF 946
              + LS+K V  D +
Sbjct: 365 HTKLSLSMKRVNEDPW 380



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            M+++G VKN+T  G F+ L   LD  V +++++ G +  P +   + + +   V+  +  
Sbjct: 219  MVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVELDQPIKVVVVGFDEN 277

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +KRV + +K  +S      E+       VG    G++  +  YG F+ IE
Sbjct: 278  TKRVSLGMKQLESHPWENIEL----KYPVGSKANGRVVSITDYGAFVEIE 323


>gi|306825063|ref|ZP_07458405.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|401683382|ref|ZP_10815268.1| S1 RNA binding domain protein [Streptococcus sp. BS35b]
 gi|414158638|ref|ZP_11414932.1| ribosomal protein S1 [Streptococcus sp. F0441]
 gi|417794610|ref|ZP_12441855.1| 30S ribosomal protein S1 [Streptococcus oralis SK255]
 gi|418975737|ref|ZP_13523635.1| 30S ribosomal protein S1 [Streptococcus oralis SK1074]
 gi|421489137|ref|ZP_15936525.1| S1 RNA binding domain protein [Streptococcus oralis SK304]
 gi|304432499|gb|EFM35473.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|334268224|gb|EGL86667.1| 30S ribosomal protein S1 [Streptococcus oralis SK255]
 gi|383347183|gb|EID25184.1| 30S ribosomal protein S1 [Streptococcus oralis SK1074]
 gi|400187460|gb|EJO21654.1| S1 RNA binding domain protein [Streptococcus sp. BS35b]
 gi|400368354|gb|EJP21369.1| S1 RNA binding domain protein [Streptococcus oralis SK304]
 gi|410871183|gb|EKS19140.1| ribosomal protein S1 [Streptococcus sp. F0441]
          Length = 400

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 155/365 (42%), Gaps = 39/365 (10%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        + VK
Sbjct: 4   FEDLLNSVSQVEPGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G+   V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  VGEVLDV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  GV+GF P S L  D     ++   VGQ    +I    P   R  LS    
Sbjct: 119 KGGLSVEF-EGVRGFIPASML--DTRFVRNTERFVGQEFDAKIKEVDPKENRFILSRREV 175

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--- 714
               +     ++ S ++ V DVVT        +A+  S G        D L H T +   
Sbjct: 176 VEAATAAARAEVFSKLA-VGDVVTGK------VARITSFGAFIDLGGVDGLVHLTELSHE 228

Query: 715 -----KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
                KSV+  G E + ++L L+ E   + LS K +        P D     +    VV 
Sbjct: 229 RNVSPKSVVTVGEEIEVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAKGDVVE 283

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V  + + G FV  L  + G    S+    +  +  +   VGQ V   +LDVN++  R+
Sbjct: 284 GTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADAERV 343

Query: 827 TLSLK 831
           +LS+K
Sbjct: 344 SLSIK 348



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIEVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAKG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +V+G VK +T  G F+ +   +D  V +S +S   +E+P++   +G+ V  +VL V   
Sbjct: 280  DVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
            ++RV +++K  + R A +
Sbjct: 340  AERVSLSIKALEERPAQE 357



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLNE 252

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R++++ K T       +    A+     +  G + ++   G FV    G+ G    S
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLAKGD---VVEGTVKRLTDFGAFVEVLPGIDGLVHVS 309

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           ++       P     VGQ V  +++     + R++LS      R ++++
Sbjct: 310 QISHKRIENPKEALTVGQEVTVKVLDVNADAERVSLSIKALEERPAQEE 358



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 147/373 (39%), Gaps = 64/373 (17%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            GV+G     EL  D   + +    VG+V+   ++  +       +++++   R+     
Sbjct: 39  TGVEGVLTLRELTNDRDADINDFVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARK- 97

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKP 720
                LV    +VVT        +  G S      +G IP    A  L+   V  +    
Sbjct: 98  -AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGVRGFIP----ASMLDTRFVRNTERFV 150

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G EFD ++  +D + +  +LS +  +  +     ++  S +    VV G V  I   G F
Sbjct: 151 GQEFDAKIKEVDPKENRFILSRREVVEAATAAARAEVFSKLAVGDVVTGKVARITSFGAF 210

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    ++    +         VG+ +   +LD+N E GR++LSLK +     
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLNEEEGRVSLSLKATTPGPW 269

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +E+K+A                    G V+EG V    DFG  V  E   
Sbjct: 270 DG--------VEQKLAK-------------------GDVVEGTVKRLTDFGAFV--EVLP 300

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREAN 950
            + G +   Q++   +E+       G  +   +LDV A AER V LS+K         A 
Sbjct: 301 GIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADAER-VSLSIK---------AL 350

Query: 951 SNRQAQKKKRKRE 963
             R AQ++ +K E
Sbjct: 351 EERPAQEEGQKEE 363



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   +V G V  +TS G FI L   +D  V L+ LS     SP+    +G+ +  +VL 
Sbjct: 191  LAVGDVVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLD 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     RV ++LK +        E      L  GD+V G +KR+  +G F+ +
Sbjct: 250  LNEEEGRVSLSLKATTPGPWDGVE----QKLAKGDVVEGTVKRLTDFGAFVEV 298


>gi|189500922|ref|YP_001960392.1| 30S ribosomal protein S1 [Chlorobium phaeobacteroides BS1]
 gi|189496363|gb|ACE04911.1| RNA binding S1 domain protein [Chlorobium phaeobacteroides BS1]
          Length = 591

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 145/353 (41%), Gaps = 38/353 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA--ELVF 551
           +++K GM+++G V  +  FG  V   GG+  L  +  ++   I  P +   +    ++V 
Sbjct: 213 ANIKVGMILEGSVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVV 271

Query: 552 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
                 +KR+++  K+        I   Y      + T+G +  I  +G FV    G++G
Sbjct: 272 VAFDENTKRVSLGMKQLESHPWENIEIKYPVG---IKTNGRVVSITDYGAFVEIEKGIEG 328

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               SE+      + PS    +GQ V+C I++      +++LS      RV+ED  + L 
Sbjct: 329 LVHISEMSWTQHIKHPSQFVTLGQEVECVILNVDKEHTKLSLSM----KRVNEDPWIALS 384

Query: 670 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
                 SL  G V  +T   V V +       G     H++D      + H +    ++K
Sbjct: 385 EKYIENSLHKGTVSNITDFGVFVEL-----EPGVDGLVHISDLSWTKKIRHPS---ELVK 436

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETG 776
              + + ++L  D  +  + L  K        Q P D         +   G +  IIE G
Sbjct: 437 KNQDLEVKVLKFDVNARRIALGHK-----QINQDPWDEFEQKYAVGAECAGKISQIIEKG 491

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             V   G + GF P S  + G   D++ ++ V   +   +++ + E  RI LS
Sbjct: 492 VIVILPGDVDGFVPVSHLLQGGVKDINASFKVEDELPLRVIEFDKENKRIILS 544



 Score = 43.5 bits (101), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             K  E + ++   MI++G VKN+T  G F+ L   LD  V +++++ G +  P +   + 
Sbjct: 206  AKREEMLANIKVGMILEGSVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVDLD 264

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + +   V++ +  +KRV + +K  +S      EI       VG    G++  +  YG F+
Sbjct: 265  QPIKVVVVAFDENTKRVSLGMKQLESHPWENIEI----KYPVGIKTNGRVVSITDYGAFV 320

Query: 1487 TIE 1489
             IE
Sbjct: 321  EIE 323


>gi|304393050|ref|ZP_07374979.1| ribosomal protein S1 [Ahrensia sp. R2A130]
 gi|303294815|gb|EFL89186.1| ribosomal protein S1 [Ahrensia sp. R2A130]
          Length = 567

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 150/348 (43%), Gaps = 24/348 (6%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G +V+G V  +  +GA V   GG+  L  +  M+   +  P +  ++G  +  +++
Sbjct: 194 NLEEGQIVEGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPTEILQIGETVKVQII 252

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  ++ RI++  K+       +I + Y   T     +G IT I  +G FV    G++G 
Sbjct: 253 RVNQETHRISLGMKQLESDPWDSIGAKYPNDTK---VNGRITNITDYGAFVELEPGIEGL 309

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
              SE+        P  +    Q V+  ++   P  RRI+L      +   +   D    
Sbjct: 310 IHVSEMSWTKKNVHPGKIVATSQEVEVIVLEVDPGKRRISLGLKQNLSNPWDTFADQYPA 369

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-- 727
           G++V G  +V       +++   G   G +   HL+D L+ +   +  I+   + D +  
Sbjct: 370 GTVVEG--EVKNKTEFGLFIGLDGDVDGMV---HLSD-LDWSRSGEEAIEDFNKGDMVKA 423

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR-LT 786
           +VLD +     +S     ++ A    +D   I  N++V   V  + + G   R +   + 
Sbjct: 424 VVLDVDVDKERISLGIKQLDGADNAGADTGEIRRNAIVTTEVMKVTDGGLETRIVDTDIE 483

Query: 787 GFAPR---SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            F  R   S+  D QR +    + VGQ + + +   + +T +  LS+K
Sbjct: 484 AFIRRGDLSRDRDEQRPE---RFSVGQKIDARVTQYDRKTRKANLSVK 528



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 102/472 (21%), Positives = 179/472 (37%), Gaps = 73/472 (15%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS---EFEIVKPGKKFKVGA 547
           F    ++ G VV+G V  ++   AI+     V+    L   S   +   +K G   +V  
Sbjct: 19  FAAQSIQEGTVVEGIVTGIEKDMAIIDAGLKVEGRVALKEFSLPGQPSTLKVGDTVEVYL 78

Query: 548 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           E V   +G       ++  K   +     L    EA +++   G I   +  G F    +
Sbjct: 79  ERVENAMG----EAVLSRDKARREESWIKLEKKFEAEEKV--EGQIFN-QVKGGFTVDLD 131

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSE 663
           G   F PRS++ + P  + + + +  Q  +     R   +I  SRR  L       R   
Sbjct: 132 GATAFLPRSQVDIRPVRDVTPLMNTPQPFQILKMDRRRGNIVVSRRAILEETRAEQRSEI 191

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 722
              ++ G +V GVV  +T     V +   G   G +    +A   + H T    +++ G 
Sbjct: 192 VQNLEEGQIVEGVVKNITDYGAFVDL---GGIDGLLHVTDMAWRRVNHPT---EILQIGE 245

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIETG 776
               Q++ ++ E+  + L  K        QL SD        +PN   V+G + NI + G
Sbjct: 246 TVKVQIIRVNQETHRISLGMK--------QLESDPWDSIGAKYPNDTKVNGRITNITDYG 297

Query: 777 CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            FV     + G    S+ +   +     K     Q V   +L+V+    RI+L LKQ+  
Sbjct: 298 AFVELEPGIEGLIHVSEMSWTKKNVHPGKIVATSQEVEVIVLEVDPGKRRISLGLKQNLS 357

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
           +  D                            + + +  G+V+EG+V    +FG+ +  +
Sbjct: 358 NPWDT---------------------------FADQYPAGTVVEGEVKNKTEFGLFIGLD 390

Query: 896 EHSDVYGFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLK 939
              DV G +    L        A      G +++A +LDV   +  + L +K
Sbjct: 391 --GDVDGMVHLSDLDWSRSGEEAIEDFNKGDMVKAVVLDVDVDKERISLGIK 440



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 136/341 (39%), Gaps = 67/341 (19%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ V G V  + +  A + +   +   L + D A+     P+E+        IG+ V   
Sbjct: 198  GQIVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPTEI------LQIGETVKVQ 250

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKT-VDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
            ++ +N+E   + L ++  +    D       ND           V GRI+ I     G  
Sbjct: 251  IIRVNQETHRISLGMKQLESDPWDSIGAKYPNDTK---------VNGRITNITDY--GAF 299

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V++ P + G +H +E+           + +    P       Q V+  VLE+     G  
Sbjct: 300  VELEPGIEGLIHVSEMS----------WTKKNVHPGKIVATSQEVEVIVLEVDP---GKR 346

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             + L L+ +L     +N  D   D    G             +V+G VKN T  G FI L
Sbjct: 347  RISLGLKQNL-----SNPWDTFADQYPAG------------TVVEGEVKNKTEFGLFIGL 389

Query: 1399 SRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKT---SDS 1452
               +D  V LS+L   +  S E   ++F  G +V   VL V+   +R+ + +K    +D+
Sbjct: 390  DGDVDGMVHLSDLD--WSRSGEEAIEDFNKGDMVKAVVLDVDVDKERISLGIKQLDGADN 447

Query: 1453 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
              A   EI   +      IV  ++ +V   GL   I +T++
Sbjct: 448  AGADTGEIRRNA------IVTTEVMKVTDGGLETRIVDTDI 482



 Score = 43.5 bits (101), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 120/296 (40%), Gaps = 28/296 (9%)

Query: 551 FRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYN 607
           F++L +  +R  I V+ +  L +++    S   +  +   I  G +  I  +G FV    
Sbjct: 160 FQILKMDRRRGNIVVSRRAILEETRAEQRSEIVQNLEEGQIVEGVVKNITDYGAFVDL-G 218

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           G+ G    +++       P+ +  +G+ VK +I+     + RI+L       ++  D   
Sbjct: 219 GIDGLLHVTDMAWRRVNHPTEILQIGETVKVQIIRVNQETHRISLGM----KQLESDPWD 274

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG------ 721
            +G+       V   N  +  +   G      P      H+   +  K  + PG      
Sbjct: 275 SIGAKYPNDTKV---NGRITNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVATS 331

Query: 722 YEFDQL-LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
            E + + L +D     + L  K +L N     P D  A      +VV G V N  E G F
Sbjct: 332 QEVEVIVLEVDPGKRRISLGLKQNLSN-----PWDTFADQYPAGTVVEGEVKNKTEFGLF 386

Query: 779 VRFLGRLTGFAPRSKAVDGQRA--DLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +   G + G    S  +D  R+  +  + +  G  V++ +LDV+ +  RI+L +KQ
Sbjct: 387 IGLDGDVDGMVHLSD-LDWSRSGEEAIEDFNKGDMVKAVVLDVDVDKERISLGIKQ 441



 Score = 41.6 bits (96), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L    IV+G VKN+T  G F+ L   +D  + +++++   V  P +   IG+ V 
Sbjct: 190  EIVQNLEEGQIVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPTEILQIGETVK 248

Query: 1431 GRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             +++ V   + R+ + +K   SD   +  ++  N + ++      G+I  +  YG F+ +
Sbjct: 249  VQIIRVNQETHRISLGMKQLESDPWDSIGAKYPNDTKVN------GRITNITDYGAFVEL 302

Query: 1489 E 1489
            E
Sbjct: 303  E 303


>gi|163856200|ref|YP_001630498.1| 30S ribosomal protein S1 [Bordetella petrii DSM 12804]
 gi|163259928|emb|CAP42229.1| 30S ribosomal protein S1 [Bordetella petrii]
          Length = 575

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 152/355 (42%), Gaps = 34/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 206 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 264

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 265 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 321

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 322 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 379

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     +  ++V   K G E + +++
Sbjct: 380 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDEIEAVVL 434

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D +   + L  K        QL  D      +     +VV G + ++   G  +    
Sbjct: 435 GIDTDKERISLGIK--------QLEGDPFNNFVATYDKGAVVPGVIKSVEPKGAVITLSV 486

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + G+   S+   G+  D +     G+++ + I++++ +T  I LS+K    + T
Sbjct: 487 DVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKTRSIQLSIKARDNAET 541



 Score = 47.4 bits (111), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAEL 549
           ++ K G  V+G + ++  FG  V  PGG+  L    H+S+    + G    + FK G E+
Sbjct: 373 TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLV---HLSDLSWTESGEEAVRNFKKGDEI 429

Query: 550 VFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
              VLG+ +  +RI++  K+         +++Y +     +  G I  +E  G  +    
Sbjct: 430 EAVVLGIDTDKERISLGIKQLEGDPFNNFVATYDKGA---VVPGVIKSVEPKGAVITLSV 486

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            V+G+   SE+      + +++   G+ ++  I++    +R I LS   +    + D + 
Sbjct: 487 DVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKTRSIQLSIKARDNAETADTIQ 546

Query: 668 KL 669
           ++
Sbjct: 547 RM 548



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 84/411 (20%), Positives = 162/411 (39%), Gaps = 68/411 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 167  EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 224

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ         
Sbjct: 225  LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ--------- 275

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    L      G+ L             GKV    D+G  V  E   +  
Sbjct: 276  ------LGEDPWVGLARRYPQGTRLF------------GKVTNLTDYGAFVEVEAGIEGL 317

Query: 902  GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN-RQ 954
              ++        V+       G  ++  +L++ +  R + L +K    + + E  +N ++
Sbjct: 318  VHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKR 377

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQ-- 1012
              K +   ++  D GV                 + LP      G   +SD +  +  +  
Sbjct: 378  GDKVRGAIKSITDFGVF----------------VGLP--GGIDGLVHLSDLSWTESGEEA 419

Query: 1013 -KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             + F  G  + A V+ + +     R+ L +K +     ++       ++YD G++V   I
Sbjct: 420  VRNFKKGDEIEAVVLGIDTDKE--RISLGIKQLEGDPFNNF-----VATYDKGAVVPGVI 472

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
              ++P    +   +   G +  +E++   S  VE+  +  K G+ + A I+
Sbjct: 473  KSVEPKGAVITLSVDVEGYLRASEIS---SGRVEDATTVLKAGENIEAMIV 520



 Score = 41.2 bits (95), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 31/179 (17%)

Query: 130 NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 189
           N   G K+ G +  + +  + + LPGG+ GL   +D       +  E+ E+ +    F  
Sbjct: 374 NFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDL------SWTESGEEAVRN--FKK 425

Query: 190 GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS-------LETVQEGMVLTAYVKS 242
           G  +  +VL +D DK+           R+SL  K L        + T  +G V+   +KS
Sbjct: 426 GDEIEAVVLGIDTDKE-----------RISLGIKQLEGDPFNNFVATYDKGAVVPGVIKS 474

Query: 243 IEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 297
           +E  G ++   +    G+L  + ++    E++   +K G  ++ ++ +IDR  + + LS
Sbjct: 475 VEPKGAVITLSV-DVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKTRSIQLS 532



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 135/332 (40%), Gaps = 60/332 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 206  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 258

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 259  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 308

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 309  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 354

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 355  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 398

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + ES E   + F  G  +   VL ++   +R+ + +K  +    +
Sbjct: 399  GGIDGLVHLSDLS--WTESGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFN 456

Query: 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                N ++    G +V G IK VE  G  IT+
Sbjct: 457  ----NFVATYDKGAVVPGVIKSVEPKGAVITL 484


>gi|406838677|ref|ZP_11098271.1| 30S ribosomal protein S1 [Lactobacillus vini DSM 20605]
          Length = 405

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 12/180 (6%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIV 537
           I+KA        T + +  G VV+GKV  + +FGA V   GGV  L    H+SE  FE V
Sbjct: 182 IVKAEREAKKAETLAKLAAGDVVEGKVARLTNFGAFVDL-GGVDGLV---HVSEIAFERV 237

Query: 538 -KPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
            KP    KVG E+  +VL V    +R++++ K+TL +    +    AE     +  G + 
Sbjct: 238 DKPSDVLKVGQEVKVKVLSVDPDKERVSLSIKQTLPQPWDQVSEKIAEGD---VIEGTVK 294

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++   G FV    GV+G    S++       P+ +   G+ +K +++S  P   R+ LS 
Sbjct: 295 RLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVLSVHPEQHRLGLSI 354



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 142/353 (40%), Gaps = 59/353 (16%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 663
            GV+G  P  EL + PG + +    VG V    ++S I  S +   S+++   R+     
Sbjct: 46  TGVEGVVPFKELSVKPGEDVTKQIKVGDVFDLVVISKI-GSDKEGGSYLLSQRRLEARKV 104

Query: 664 -DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVI 718
            D++ K    G  +S  V  V    +VV    +G+    IP   + DH +E     K   
Sbjct: 105 WDEIEKKYEAGETISAPVTQVVKGGLVVDAGVRGF----IPASMIEDHYVEDLNQFK--- 157

Query: 719 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL--PSDASHIHPNSVVHGYVCNIIETG 776
             G   +  ++    S N L+ +   ++ + ++       + +    VV G V  +   G
Sbjct: 158 --GQTLELKIIEIEPSENRLILSHKEIVKAEREAKKAETLAKLAAGDVVEGKVARLTNFG 215

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            FV  LG + G    S+ +  +R D  S    VGQ V+  +L V+ +  R++LS+KQ+  
Sbjct: 216 AFVD-LGGVDGLVHVSE-IAFERVDKPSDVLKVGQEVKVKVLSVDPDKERVSLSIKQTLP 273

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
              D         + EKIA                    G VIEG V     FG  V  E
Sbjct: 274 QPWDQ--------VSEKIAE-------------------GDVIEGTVKRLTSFGAFV--E 304

Query: 896 EHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
               V G      I+H  +A     + SG  I+  +L V   +  + LS+K +
Sbjct: 305 VLPGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVLSVHPEQHRLGLSIKAL 357



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            K  E +  L+   +V+G V  +T+ G F+ L   +D  V +S ++   V+ P     +G+
Sbjct: 190  KKAETLAKLAAGDVVEGKVARLTNFGAFVDLG-GVDGLVHVSEIAFERVDKPSDVLKVGQ 248

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  +VLSV+P  +RV +++K    +T  Q        +  GD++ G +KR+ S+G F+ 
Sbjct: 249  EVKVKVLSVDPDKERVSLSIK----QTLPQPWDQVSEKIAEGDVIEGTVKRLTSFGAFVE 304

Query: 1488 I 1488
            +
Sbjct: 305  V 305



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 18/180 (10%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILS 578
           GV+   P   M E   V+   +FK G  L  +++ ++    R+ ++HK+ +   + A   
Sbjct: 135 GVRGFIP-ASMIEDHYVEDLNQFK-GQTLELKIIEIEPSENRLILSHKEIVKAEREA--- 189

Query: 579 SYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
             AE   +L    +  G + ++   G FV    GV G    SE+  +   +PS +  VGQ
Sbjct: 190 KKAETLAKLAAGDVVEGKVARLTNFGAFVDL-GGVDGLVHVSEIAFERVDKPSDVLKVGQ 248

Query: 635 VVKCRIMSSIPASRRINLSF---MMKP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 690
            VK +++S  P   R++LS    + +P  +VSE   +  G ++ G V  +T     V V+
Sbjct: 249 EVKVKVLSVDPDKERVSLSIKQTLPQPWDQVSEK--IAEGDVIEGTVKRLTSFGAFVEVL 306


>gi|421497056|ref|ZP_15944247.1| 30S ribosomal protein S1 [Aeromonas media WS]
 gi|407183949|gb|EKE57815.1| 30S ribosomal protein S1 [Aeromonas media WS]
          Length = 556

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLQEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKV 245

Query: 554 LGVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  V+   K+      +AI   Y E T RL   G +T +  +GCFV    GV+G
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPETT-RL--SGRVTNLTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    PS + +VG VV   ++      RRI+L        P ++  +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDVVDVMVLDIDEERRRISLGLKQCKSNPWQLFAETHA 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   +    ++V   K G E +
Sbjct: 363 K-GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  SD       ++V G V  +   G  +     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLSDNK---KGAIVKGKVTEVDAKGAVIELADG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   S A   +  D +    VG  V +  + V+ +   ++LS++
Sbjct: 474 VEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 20/219 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           K++ ++    TH+    G  V GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KSNPWQLFAETHA---KGDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNNQGE 403

Query: 541 ---KKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
              ++FK G E+   VL V  + +RI++  K+         LS   +     I  G +T+
Sbjct: 404 EAVREFKKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGA---IVKGKVTE 460

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++  G  +   +GV+G+   S+   D   + + +  VG  V+ + M     +R ++LS  
Sbjct: 461 VDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV-VYVIAKG 693
            K      D+ V + SL +   +VV  NA++  +  AKG
Sbjct: 521 AKD---EADERVAIDSL-NQQEEVVFSNAMMEAFKAAKG 555



 Score = 40.8 bits (94), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G +K++T  G FI L   +D  V LS++S +   E   +EF  G  +   VL V+P  
Sbjct: 367  VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIEAVVLQVDPER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +    ++     LS+   G IV G++  V++ G  I +
Sbjct: 427  ERISLGVKQIEEDPFNKY----LSDNKKGAIVKGKVTEVDAKGAVIEL 470



 Score = 40.4 bits (93), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 392 NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+ L    H +      K+  I D    + +D G+  L+ +          ++ ++  E
Sbjct: 352 NPWQLFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNNQGE 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK  E   V +++   R    L    ++   F   +   SD K G +VKGKV 
Sbjct: 404 EAVREF-KKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYL---SDNKKGAIVKGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            VD+ GA+++   GV+        +   +        VG E+  + +GV  K  TV+
Sbjct: 460 EVDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVS 516


>gi|226939798|ref|YP_002794871.1| 30S ribosomal protein S1 [Laribacter hongkongensis HLHK9]
 gi|226714724|gb|ACO73862.1| RpsA [Laribacter hongkongensis HLHK9]
          Length = 559

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 145/353 (41%), Gaps = 38/353 (10%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G +VKG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  +VL 
Sbjct: 188 LKEGAIVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLAVGDEVEAKVLK 246

Query: 556 VKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
              ++  V+   K L +     LS    +  RL   G +T +  +G FV    G++G   
Sbjct: 247 FDQEKNRVSLGLKQLGEDPWVGLSRRYPSGTRLF--GRVTNLTDYGAFVEIEQGIEGLVH 304

Query: 615 RSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDL---V 667
            SE+   +    PS +  +G  V+  I+      RRI+L     M  P     DD     
Sbjct: 305 VSEMDWTNKNVHPSKVVSLGDEVEVMILEIDEDRRRISLGMKQCMPNPW----DDFSANY 360

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI---KPGYEF 724
           K G  + G +  +T   V +     G   G     HL+D L  +   +  I   K G E 
Sbjct: 361 KKGDKIRGAIKSITDFGVFI-----GLPGGIDGLVHLSD-LSWSVAGEEAIRNFKKGDEV 414

Query: 725 DQL-LVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCF 778
           + + L +D +   + +  K        QL  D      S    NS+V G + ++   G  
Sbjct: 415 EAMVLSIDTDKERISMGIK--------QLEGDPFSNFLSVNDKNSLVKGVIKSVDARGAV 466

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           V   G +  + P S+    +  D       G+ + + I++V+ ++  + LS+K
Sbjct: 467 VMLEGDIEAYLPASELARDRVEDARSLLKEGEEIEALIINVDRKSRSVKLSIK 519


>gi|116623389|ref|YP_825545.1| 30S ribosomal protein S1 [Candidatus Solibacter usitatus Ellin6076]
 gi|116226551|gb|ABJ85260.1| SSU ribosomal protein S1P [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 571

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 147/350 (42%), Gaps = 36/350 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G  V G V  +  +GA +   GG+  L  +  MS   I  P +  +VG E+  +VL    
Sbjct: 204 GAAVTGTVKNLTDYGAFIDL-GGIDGLLHVTDMSYGRITHPSEMLQVGQEITVKVLKFDR 262

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R+++  K+        ++  Y     R+I  G +  +  +G FV    GV+G    S
Sbjct: 263 TKERVSLGIKQLEPDPWDTVIERYP-VNGRVI--GRVVNVTDYGAFVELEPGVEGLIHIS 319

Query: 617 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLGSLV 673
           E+      + PS +   G  V+  ++   P  RRI+L    ++P   +  D    +GS+V
Sbjct: 320 EMTWSRRMKHPSKVVKAGDQVEAVVLEVHPKDRRISLGLKQLEPNPWTTIDQRYSVGSVV 379

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFDQLL 728
            G V  +T     + +      +G     H++D      ++H +    V+K G    Q +
Sbjct: 380 EGRVRNMTDFGAFIEI-----EEGIDGLVHVSDLSWTKRVKHPS---EVLKKGM-IVQAV 430

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSV---VHGYVCNIIETGCFVRFLG 783
           +L+ +SS+  LS         +QL  DA  S+   + V   VHG VC I   G FV    
Sbjct: 431 ILNIDSSSHRLSL------GIKQLQPDAWESYFQTHQVGDTVHGRVCRIASFGPFVELAE 484

Query: 784 RLTGFAPRSK--AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G    S+      +R       ++G      I+ ++    +I LSL+
Sbjct: 485 GVEGLCHFSEIPGYSNRRGAEEMPVHIGDEYDFKIIKMSEAEKKIGLSLR 534



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 81/386 (20%), Positives = 156/386 (40%), Gaps = 73/386 (18%)

Query: 1113 IGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            +GQ +  +II K N+         +++I+  + +   +    LFE      G  VTG V 
Sbjct: 160  VGQDIPVKII-KLNRRRGNVVVSRKMAIEEEINSRKTVTLDHLFE------GAAVTGTVK 212

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
             + +  A + +   +   L + D +Y     PSE+        +G+ +T  VL  ++ K+
Sbjct: 213  NLTDYGAFIDLG-GIDGLLHVTDMSYGRITHPSEM------LQVGQEITVKVLKFDRTKE 265

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG-GLVVQIGPHLYG 1287
             + L ++  +            D   T I    + G  I ++++    G  V++ P + G
Sbjct: 266  RVSLGIKQLEP-----------DPWDTVIERYPVNGRVIGRVVNVTDYGAFVELEPGVEG 314

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI----SRTVRGTFHVELS 1343
             +H +E+           +      P      G  V+  VLE+     R   G   +E +
Sbjct: 315  LIHISEMT----------WSRRMKHPSKVVKAGDQVEAVVLEVHPKDRRISLGLKQLEPN 364

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
              +++D   S  S                        +V+G V+N+T  G FI +   +D
Sbjct: 365  PWTTIDQRYSVGS------------------------VVEGRVRNMTDFGAFIEIEEGID 400

Query: 1404 AKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1462
              V +S+LS    V+ P +    G +V   +L+++  S R+ + +K    +    +  + 
Sbjct: 401  GLVHVSDLSWTKRVKHPSEVLKKGMIVQAVILNIDSSSHRLSLGIK----QLQPDAWESY 456

Query: 1463 LSNLHVGDIVIGQIKRVESYGLFITI 1488
                 VGD V G++ R+ S+G F+ +
Sbjct: 457  FQTHQVGDTVHGRVCRIASFGPFVEL 482



 Score = 47.0 bits (110), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 137/344 (39%), Gaps = 50/344 (14%)

Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
           K ++L+ + EG  +T  VK++ D+G  +  G     G L   +++   G    P  +LQ 
Sbjct: 194 KTVTLDHLFEGAAVTGTVKNLTDYGAFIDLG--GIDGLLHVTDMS--YGRITHPSEMLQV 249

Query: 283 ------VVRSIDRTRKVVYL---SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
                  V   DRT++ V L     +PD     + +          V G ++  RV ++ 
Sbjct: 250 GQEITVKVLKFDRTKERVSLGIKQLEPDPWDTVIER--------YPVNGRVIG-RVVNVT 300

Query: 334 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-- 391
           + G  +       G + I  +  +    +         +V A +L V P  R + L L  
Sbjct: 301 DYGAFVELEPGVEGLIHISEMTWSRRMKHPSKVVKAGDQVEAVVLEVHPKDRRISLGLKQ 360

Query: 392 ---NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-E 447
              NP+   ++       VG + +    VR     G  ++I          V +SD++  
Sbjct: 361 LEPNPWTTIDQ----RYSVGSVVEGR--VRNMTDFGAFIEIEE---GIDGLVHVSDLSWT 411

Query: 448 EEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           + V+   +  K+G  V+  IL      H   L    L+  A+E    TH   + G  V G
Sbjct: 412 KRVKHPSEVLKKGMIVQAVILNIDSSSHRLSLGIKQLQPDAWESYFQTH---QVGDTVHG 468

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
           +V  + SFG  V+   GV+ LC   H SE     PG   + GAE
Sbjct: 469 RVCRIASFGPFVELAEGVEGLC---HFSEI----PGYSNRRGAE 505



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAG 1431
            IE    N  V G V NVT  G F+ L   ++  + +S ++    ++ P K    G  V  
Sbjct: 283  IERYPVNGRVIGRVVNVTDYGAFVELEPGVEGLIHISEMTWSRRMKHPSKVVKAGDQVEA 342

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFIT 1487
             VL V P  +R+ + LK        Q E N  + +     VG +V G+++ +  +G FI 
Sbjct: 343  VVLEVHPKDRRISLGLK--------QLEPNPWTTIDQRYSVGSVVEGRVRNMTDFGAFIE 394

Query: 1488 IE 1489
            IE
Sbjct: 395  IE 396



 Score = 40.4 bits (93), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V G VKN+T  G FI L   +D  + ++++S G +  P +   +G+ +  +VL  +   +
Sbjct: 207  VTGTVKNLTDYGAFIDLG-GIDGLLHVTDMSYGRITHPSEMLQVGQEITVKVLKFDRTKE 265

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            RV + +K  +           +    V   VIG++  V  YG F+ +E
Sbjct: 266  RVSLGIKQLEPDPWD----TVIERYPVNGRVIGRVVNVTDYGAFVELE 309


>gi|452124296|ref|ZP_21936880.1| 30S ribosomal protein S1 [Bordetella holmesii F627]
 gi|452127693|ref|ZP_21940273.1| 30S ribosomal protein S1 [Bordetella holmesii H558]
 gi|451923526|gb|EMD73667.1| 30S ribosomal protein S1 [Bordetella holmesii F627]
 gi|451926562|gb|EMD76695.1| 30S ribosomal protein S1 [Bordetella holmesii H558]
          Length = 570

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 150/355 (42%), Gaps = 34/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 201 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 259

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 260 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 316

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 317 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 374

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     T  ++V   K G E + +++
Sbjct: 375 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDELEAVVL 429

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D E   + L  K        QL  D      +     +VV G + ++   G  V    
Sbjct: 430 GIDTEKERISLGIK--------QLEGDPFNNFVATYDKGAVVPGTIKSVEPKGAVVTLSV 481

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + G+   S+   G+  D +     G ++ + I++++ +   + LS+K    + T
Sbjct: 482 DVEGYLRASEISSGRVEDATTVLTAGANIEAMIINIDRKARSVQLSVKARDSAET 536



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFR 552
           ++ K G  V+G + ++  FG  V  PGG+  L  L  +S  E  +   + FK G EL   
Sbjct: 368 TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDELEAV 427

Query: 553 VLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VLG+ +  +RI++  K+         +++Y +     +  G I  +E  G  V     V+
Sbjct: 428 VLGIDTEKERISLGIKQLEGDPFNNFVATYDKGA---VVPGTIKSVEPKGAVVTLSVDVE 484

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           G+   SE+      + +++   G  ++  I++    +R + LS
Sbjct: 485 GYLRASEISSGRVEDATTVLTAGANIEAMIINIDRKARSVQLS 527



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 83/409 (20%), Positives = 160/409 (39%), Gaps = 64/409 (15%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 162  EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 219

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ         
Sbjct: 220  LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ--------- 270

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    L      G+ L             GKV    D+G  V  E   +  
Sbjct: 271  ------LGEDPWVGLARRYPQGTRLF------------GKVTNLTDYGAFVEVEAGIEGL 312

Query: 902  GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN-RQ 954
              ++        V+       G  ++  +L++ +  R + L +K    + + E  +N ++
Sbjct: 313  VHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKR 372

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP-EYNHSIGYASVSDYNTQKFPQK 1013
              K +   ++  D GV                 + LP   +  +  + +S   T +   +
Sbjct: 373  GDKVRGAIKSITDFGVF----------------VGLPGGIDGLVHLSDLSWTETGEEAVR 416

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
             F  G  + A V+ + +     R+ L +K +     ++       ++YD G++V   I  
Sbjct: 417  NFKKGDELEAVVLGIDTEKE--RISLGIKQLEGDPFNNF-----VATYDKGAVVPGTIKS 469

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            ++P    +   +   G +  +E++   S  VE+  +    G  + A II
Sbjct: 470  VEPKGAVVTLSVDVEGYLRASEIS---SGRVEDATTVLTAGANIEAMII 515


>gi|410459394|ref|ZP_11313145.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
 gi|409930370|gb|EKN67371.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
          Length = 377

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 23/341 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  V GKV  V+    +V     V+ + P+  +S   I K G   KV  +L  +V+ V+ 
Sbjct: 17  GDTVGGKVTKVEDKHVLVDIGFKVEGIVPISELSSLHIEKAGDVVKVNDDLTLKVIKVEE 76

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           + I ++ K    ++    L +  E  +  +    +  + K G  V    GV+GF P S L
Sbjct: 77  EEIILSKKAVDAENAWDELVNKFETGE--VFEAEVKDVVKGGLVVDI--GVRGFIPAS-L 131

Query: 619 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
                 E  S Y  G+ +  +++      + +  S R  L   +   +    D +K+G +
Sbjct: 132 VERHFVEDFSEYK-GRNISLKVVEIDREKNRVILSHRAVLDDEIASQKQQTIDALKVGQV 190

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           + G V  +    V V +   G   G +    LA   +H      V+  G +   ++L +D
Sbjct: 191 LEGTVQRLADFGVFVDI---GGIDGLVHISQLAH--QHVDKPADVVAEGQKVKVKVLSID 245

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            ++  + LS K +L       P D         V G V  ++  G FV     + G    
Sbjct: 246 KDNERISLSIKETLPG-----PWDLIEYKRGDEVSGTVKRLVNFGAFVEVAPNVEGLVHI 300

Query: 792 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           S+  +   A   +    G+ V+  ILD+N E  RI+LS+K+
Sbjct: 301 SQISNRHIATPHEVLKEGEKVKVKILDINKENQRISLSIKE 341



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 65/334 (19%)

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            +IG  V G V KV+++  L+ I        F ++     SEL       HI KA  G V+
Sbjct: 15   AIGDTVGGKVTKVEDKHVLVDIG-------FKVEGIVPISELS----SLHIEKA--GDVV 61

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
             +N +  L  + +   +  +S K VD  N  D +      G++    +  ++ G  GLVV
Sbjct: 62   KVNDDLTLKVIKVEEEEIILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKG--GLVV 119

Query: 1280 QIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
             IG     P      HF E                     S Y +G+ +  KV+EI R  
Sbjct: 120  DIGVRGFIPASLVERHFVE-------------------DFSEY-KGRNISLKVVEIDRE- 158

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                 V LS R+ LD   ++                + I+ L    +++G V+ +   G 
Sbjct: 159  --KNRVILSHRAVLDDEIASQKQ-------------QTIDALKVGQVLEGTVQRLADFGV 203

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ +   +D  V +S L+  +V+ P      G+ V  +VLS++  ++R+ +++K +    
Sbjct: 204  FVDIG-GIDGLVHISQLAHQHVDKPADVVAEGQKVKVKVLSIDKDNERISLSIKETLPGP 262

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                   +L     GD V G +KR+ ++G F+ +
Sbjct: 263  W------DLIEYKRGDEVSGTVKRLVNFGAFVEV 290



 Score = 41.2 bits (95), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 30/261 (11%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY--HVGQVVKCRIMSSIPA-- 646
           G +TK+E     V     V+G  P SEL        SS++    G VVK     ++    
Sbjct: 22  GKVTKVEDKHVLVDIGFKVEGIVPISEL--------SSLHIEKAGDVVKVNDDLTLKVIK 73

Query: 647 --SRRINLSFMMKPTRVSEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
                I LS        + D+LV   + G +    V  V    +VV +  +G+   ++  
Sbjct: 74  VEEEEIILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKGGLVVDIGVRGFIPASLVE 133

Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL---INSAQQLPSDASH 758
            H  +           +K       ++ +D E + ++LS +  L   I S +Q   DA  
Sbjct: 134 RHFVEDFSEYKGRNISLK-------VVEIDREKNRVILSHRAVLDDEIASQKQQTIDALK 186

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +    V+ G V  + + G FV  +G + G    S+         +     GQ V+  +L 
Sbjct: 187 V--GQVLEGTVQRLADFGVFVD-IGGIDGLVHISQLAHQHVDKPADVVAEGQKVKVKVLS 243

Query: 819 VNSETGRITLSLKQSCCSSTD 839
           ++ +  RI+LS+K++     D
Sbjct: 244 IDKDNERISLSIKETLPGPWD 264


>gi|126669095|ref|ZP_01740026.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
 gi|126626450|gb|EAZ97116.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
          Length = 455

 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 137/346 (39%), Gaps = 30/346 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G+ +KG V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL    
Sbjct: 83  GLTIKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEINVKVLKFDR 141

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + I + Y E +        +T +  +GCF     GV+G    S
Sbjct: 142 ERNRVSLGLKQLGEDPWVEIKARYPEGSK---VTARVTNLTDYGCFAELEEGVEGLVHVS 198

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLGSLV 673
           E+   +    PS +  VG  V   I+      RRI+L      +   ED       G  +
Sbjct: 199 EMDWTNKNIHPSKVVQVGDEVGVMILDIDEERRRISLGIKQCVSNPWEDFSGNFNKGDRI 258

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-LLVL 730
           SG +  +T   + +     G   G     HL+D   + T  ++V   K G E D  +L +
Sbjct: 259 SGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNETGEEAVREYKKGDEVDTVILSV 313

Query: 731 DNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFLGRL 785
           D E   + L  K        QL SD  A  +  N   S+V G V  +      +     +
Sbjct: 314 DPERERISLGIK--------QLESDPFAEFVQLNDKGSIVKGVVSAVDAKAATITLSDEV 365

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                 S+    +  D       G+ V + I+ ++ +   I LS+K
Sbjct: 366 EAILKASEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVK 411



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 135/355 (38%), Gaps = 51/355 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LET+ EG+ +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 77  LETLTEGLTIKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEINV 134

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             + I    P G  V+ RV ++ + G
Sbjct: 135 KVLKFDRERNRVSLGLKQLGEDP------------WVEIKARYPEGSKVTARVTNLTDYG 182

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
                     G V +  +  T    +         +V   IL +D   R + L +     
Sbjct: 183 CFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVGVMILDIDEERRRISLGIKQCVS 242

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+       N+      K+  I D    + +D G+  L+ +          ++ ++  E
Sbjct: 243 NPWEDFSGNFNKGDRISGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNETGE 294

Query: 448 EEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKG 504
           E VR+    YK+G  V   IL      E ++ GI  L++  F   V  +     G +VKG
Sbjct: 295 EAVRE----YKKGDEVDTVILSVDPERERISLGIKQLESDPFAEFVQLND---KGSIVKG 347

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
            V AVD+  A +     V+A+     +S   +       K G E+  +++ +  K
Sbjct: 348 VVSAVDAKAATITLSDEVEAILKASEISRDRVEDARNALKEGEEVEAKIISIDRK 402


>gi|381394198|ref|ZP_09919916.1| small subunit ribosomal protein S1 [Glaciecola punicea DSM 14233 =
           ACAM 611]
 gi|379330470|dbj|GAB55049.1| small subunit ribosomal protein S1 [Glaciecola punicea DSM 14233 =
           ACAM 611]
          Length = 557

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 139/347 (40%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 SNLEEGDEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 245

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L       R+++  K+        I   Y E        G +T +  +GCFV   +GV+G
Sbjct: 246 LKFDKDKSRVSLGMKQMGSDPWQEIAHRYPEGAK---LSGAVTNLTDYGCFVEIEDGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
               SE+   +    PS + ++G VV   ++      RRI+L     +  P         
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNLGDVVNVMVLEIDEERRRISLGLKQCIDNPWETFAKSHE 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D        ++V   K G E  
Sbjct: 363 K-GDKVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWQKQGEEAVREYKKGDEIS 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  +D   I   ++V+G V      G  V     
Sbjct: 417 AVVLQVDPERERISLGVKQIDEDPFNKYLTD---IKKGAIVNGIVIEADAKGVTVNLAEE 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + GF         +  D S+   VG ++ +    V+ +   ITLS+K
Sbjct: 474 VDGFIRIGDLARERVEDASEIVKVGDTIEAKYTGVDRKNRVITLSVK 520



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 101/476 (21%), Positives = 196/476 (41%), Gaps = 75/476 (15%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +V+G V+++D    IV    G+K+   +P + +F+      +  VG  +   + 
Sbjct: 17  ETRPGAIVRGTVVSIDK--DIVLVDAGLKSESAIP-IEQFKAADGSLEVAVGDTIDVALD 73

Query: 555 GVKS---KRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            V+    + I    K    ++ + +  +Y E AT + + +G +      G F    N V+
Sbjct: 74  AVEDGFGETILSREKAKRHEAWVELEKAYDEKATIKGVINGKV-----KGGFTVEVNTVR 128

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            F P S + + P  E + +   G+ ++ +++      +++  SRR   + +   +    D
Sbjct: 129 AFLPGSLVDVRPVRETTHLE--GKELEFKVIKLDAKRNNVVVSRR---AVIEAESSAERD 183

Query: 665 DL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 720
            L   ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++  
Sbjct: 184 QLLSNLEEGDEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNV 237

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV-VHGYVCNIIETGCF 778
           G E + ++L  D + S + L  K    +  Q++    +H +P    + G V N+ + GCF
Sbjct: 238 GDEINVKVLKFDKDKSRVSLGMKQMGSDPWQEI----AHRYPEGAKLSGAVTNLTDYGCF 293

Query: 779 VRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           V     + G    S+ +D    ++  SK   +G  V   +L+++ E  RI+L LKQ C  
Sbjct: 294 VEIEDGVEGLVHVSE-MDWTNKNIHPSKVVNLGDVVNVMVLEIDEERRRISLGLKQ-CID 351

Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
           +   +F + H    EK                      G  + GK+    DFG+ +  + 
Sbjct: 352 NPWETFAKSH----EK----------------------GDKVSGKIKSITDFGIFIGLDG 385

Query: 897 ------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
                 H     +    + A    + G  I A +L V      + L +K +  D F
Sbjct: 386 GIDGLVHLSDISWQKQGEEAVREYKKGDEISAVVLQVDPERERISLGVKQIDEDPF 441


>gi|418963617|ref|ZP_13515452.1| 30S ribosomal protein S1 [Streptococcus anginosus subsp. whileyi
           CCUG 39159]
 gi|383342941|gb|EID21141.1| 30S ribosomal protein S1 [Streptococcus anginosus subsp. whileyi
           CCUG 39159]
          Length = 399

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 155/363 (42%), Gaps = 35/363 (9%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG----GVKALCPLPHMSEFEI---VK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G    GV  L  L +  E +I   VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDANQANVAIAGTGVEGVLTLRELTNDREADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---- 653
           K G  V F  G+ GF P S L  D     ++   VGQ  + +I    P   R  LS    
Sbjct: 119 KGGLSVEF-EGLCGFIPASML--DTRFVRNTERFVGQEFEAKIKEVDPKENRFILSRREV 175

Query: 654 FMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
              K      +   KL  G +V+G V  +T     + +   G   G +    L+   E  
Sbjct: 176 VEEKAAAARAEVFSKLAVGDIVTGKVARITSFGAFIDL---GGVDGLVHLTELSH--ERN 230

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGY 768
              KSV+  G E + ++L L+ E   + LS K +        P D     +    V+ G 
Sbjct: 231 VSPKSVVSVGDEIEVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVIEGT 285

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           V  + + G FV  L  + G    S+    +  +      VGQ V   +LDVN++  R++L
Sbjct: 286 VKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSL 345

Query: 829 SLK 831
           S+K
Sbjct: 346 SIK 348



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDIVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++     + R++LS      R +++D
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERPAQED 358



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GDIV G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDIVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GDEIEVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
            ++RV +++K  + R A +
Sbjct: 340  AERVSLSIKALEERPAQE 357



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 43/228 (18%)

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S +    +V G V  I   G F+  LG + G    ++    +         VG  +   +
Sbjct: 189 SKLAVGDIVTGKVARITSFGAFID-LGGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKV 247

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           LD+N E GR++LSLK +     D         +E+K+A                    G 
Sbjct: 248 LDLNEEEGRVSLSLKATTPGPWDG--------VEQKLAA-------------------GD 280

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV-A 928
           VIEG V    DFG  V  E    + G +   Q++   VE+       G  +   +LDV A
Sbjct: 281 VIEGTVKRLTDFGAFV--EVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNA 338

Query: 929 KAERLVDLSLKTVFIDRFREANSN---RQAQKKKRKREASKDLGVHQT 973
            AER V LS+K    +R  + +S    RQ++ +++KR+  +D  + +T
Sbjct: 339 DAER-VSLSIKA-LEERPAQEDSQKEKRQSRPRRQKRQEKRDFELPET 384



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            IV G V  +TS G FI L   +D  V L+ LS     SP+    +G  +  +VL +    
Sbjct: 196  IVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNEEE 254

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 255  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|379713795|ref|YP_005302133.1| 30S ribosomal protein S1 [Rickettsia massiliae str. AZT80]
 gi|376334441|gb|AFB31673.1| 30S ribosomal protein S1 [Rickettsia massiliae str. AZT80]
          Length = 568

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 158/361 (43%), Gaps = 20/361 (5%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +     + +T G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFP--VGKHMT-GKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360

Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                P T+ +E++ V  G+++   +  +T   +  +V       G I    ++   +  
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
            ++KS  K G E + ++L ++ E   + L  K    N   ++   ++     ++V   + 
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYHEI---SNEYKKGTIVKALIT 472

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            + + G  V    ++ GF  R++  D +     + +++ + + + ++ +   TGRI LS+
Sbjct: 473 EVKDEGLAVLLNNKVAGFIKRTELSDKKDEQKPEMFHIDEEIEAKVVSIEKSTGRILLSV 532

Query: 831 K 831
           K
Sbjct: 533 K 533



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 131/605 (21%), Positives = 244/605 (40%), Gaps = 109/605 (18%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLALPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKDEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSD---ASHIHPNSVVHGYVCNIIET 775
            F+Q     ++  D ++  + L  K    N  + +  +     H+       G V N  + 
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKHMT------GKVTNFADY 303

Query: 776  GCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            G F+     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C
Sbjct: 304  GVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C 362

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
                     QE+ L                  K+ E   +G++I+  +    DFG+ V+ 
Sbjct: 363  ---------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVAL 396

Query: 895  EEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
              + D  G I    ++          + + G  I+  +L +   +  V L +K +  + +
Sbjct: 397  GNNMD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPY 454

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 1006
             E ++  +                   V A++  VK+  L + L   N   G+   ++ +
Sbjct: 455  HEISNEYKK---------------GTIVKALITEVKDEGLAVLL--NNKVAGFIKRTELS 497

Query: 1007 TQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYD 1062
             +K  QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ +
Sbjct: 498  DKKDEQKPEMFHIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTN 555

Query: 1063 VGSLV 1067
            +G ++
Sbjct: 556  MGDIL 560



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 119/289 (41%), Gaps = 45/289 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+ +TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKHMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
            ++ EK  + L ++  Q+            N  T   E + VG  I   +  +   G+ V 
Sbjct: 348  VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V
Sbjct: 396  LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QV 442

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             L ++                   +P  + E   +     IV+  +  V  +G  ++L+ 
Sbjct: 443  SLGIKQL-----------------SPNPYHEISNEYKKGTIVKALITEVKDEGLAVLLNN 485

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            K+   +  + LSD   E   + F I + +  +V+S+E  + R+ +++K 
Sbjct: 486  KVAGFIKRTELSDKKDEQKPEMFHIDEEIEAKVVSIEKSTGRILLSVKA 534


>gi|418323838|ref|ZP_12935098.1| 30S ribosomal protein S1 [Staphylococcus pettenkoferi VCU012]
 gi|365229075|gb|EHM70242.1| 30S ribosomal protein S1 [Staphylococcus pettenkoferi VCU012]
          Length = 393

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 116/258 (44%), Gaps = 20/258 (7%)

Query: 413 QSKVVRVDRGLGLLLDIPS---TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR-IL 468
           +++V  V +G GL++D+      P S  +   I D ++ E + L+ K +E      R IL
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTEYIEDFSDYEGQTLKLKVEELDPANNRVIL 170

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
             + +E L     K   F+ L       + G V+ GK+  + +FGA V   GGV  L  +
Sbjct: 171 SHKAVEELENAEKKEKLFDSL-------QEGDVIDGKIARLTNFGAFVDI-GGVDGLVHV 222

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDR 586
             +S   + KP     +G E+  +V  V   ++RI+++ K TL     AI   + E    
Sbjct: 223 SELSHEHVEKPEDAVSIGDEVKVKVKSVDKENERISLSIKDTLPSPFEAIKGQFNEGD-- 280

Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
               G + ++   G FV    GVQG    SE+       PS +   GQ V  +I+     
Sbjct: 281 -TIEGTVVRLVNFGAFVEISAGVQGLVHISEISHKHIGTPSEVLEPGQAVSVKILGINVD 339

Query: 647 SRRINLSFMMKPTRVSED 664
             RI+LS  +K T  +ED
Sbjct: 340 EERISLS--IKATLPAED 355



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 144/353 (40%), Gaps = 24/353 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V  +V  ++    IV   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  TDIKEGDKVTAEVQEIEDKQVIVHVNGGKFNGIIPISQLSTHRIDDPKEAVKVGDEIGAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L         +T++ K G  V    G
Sbjct: 71  VTKIEIDDENETGAYILSKRQLETEKSYEFLQEKLDNNETIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSED--- 664
            +GF P S +  +   E  S Y  GQ +K ++    PA+ R+ LS   ++    +E    
Sbjct: 129 QRGFVPASLISTEY-IEDFSDYE-GQTLKLKVEELDPANNRVILSHKAVEELENAEKKEK 186

Query: 665 --DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 721
             D ++ G ++ G +  +T     V +   G   G +    L+ +H+E      S+    
Sbjct: 187 LFDSLQEGDVIDGKIARLTNFGAFVDI---GGVDGLVHVSELSHEHVEKPEDAVSIGDEV 243

Query: 722 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
               + +  +NE   + LS K +L +  + +       +    + G V  ++  G FV  
Sbjct: 244 KVKVKSVDKENE--RISLSIKDTLPSPFEAI---KGQFNEGDTIEGTVVRLVNFGAFVEI 298

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
              + G    S+         S+    GQ+V   IL +N +  RI+LS+K + 
Sbjct: 299 SAGVQGLVHISEISHKHIGTPSEVLEPGQAVSVKILGINVDEERISLSIKATL 351


>gi|423332744|ref|ZP_17310526.1| 30S ribosomal protein S1 [Lactobacillus reuteri ATCC 53608]
 gi|337727862|emb|CCC02950.1| 30S ribosomal protein S1 [Lactobacillus reuteri ATCC 53608]
          Length = 416

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++PG V++GKV  + +FGA +   GGV  L  +  +S   + KP      G ++  +V
Sbjct: 197 AELQPGDVIEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKV 255

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V  + +RI+++ K+TL      I        D ++T G + ++   G FV  + GV+G
Sbjct: 256 LSVDPERERISLSIKQTLPGPWDDI--EEKAPVDSVLT-GTVKRLTSFGAFVEVFPGVEG 312

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P+ +   GQ V+ +++S  P  +R+ LS 
Sbjct: 313 LVHISQISHKHIATPADVLKPGQEVQVKVISVDPEHQRLGLSM 355



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 19/241 (7%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDIQKKFDEGEHITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
           G E +  +V    S N L+ +   +I +  +  ++   + + P  V+ G V  +   G F
Sbjct: 159 GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVIEGKVARMTNFGAF 218

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    S+         S     GQ V+  +L V+ E  RI+LS+KQ+     
Sbjct: 219 ID-LGGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPERERISLSIKQTLPGPW 277

Query: 839 D 839
           D
Sbjct: 278 D 278



 Score = 48.1 bits (113), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +L P  +++G V  +T+ G FI L   +D  V +S +S  +V+ P      G+ V  +VL
Sbjct: 198  ELQPGDVIEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVL 256

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            SV+P  +R+ +++K +        E        V  ++ G +KR+ S+G F+ +
Sbjct: 257  SVDPERERISLSIKQTLPGPWDDIE----EKAPVDSVLTGTVKRLTSFGAFVEV 306



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 36/198 (18%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  GD++ G+++++ +   G  + +G  + G VH +E+    V  P         D L+ 
Sbjct: 199  LQPGDVIEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYDHVDKP--------SDVLTA 247

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQDVKVKVLSVDPERE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P + ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +V+S
Sbjct: 284  APVDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVIS 343

Query: 1436 VEPLSKRVEVTLKTSDSR 1453
            V+P  +R+ +++K  + R
Sbjct: 344  VDPEHQRLGLSMKALEER 361



 Score = 45.1 bits (105), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 148/351 (42%), Gaps = 30/351 (8%)

Query: 496 VKPGMVVKGKVIAV-DSFGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           VK G VVKG+V+A+ D   AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 554 LG-----VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           +       ++    ++H++   +     +    +  + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDEGEHITAK--VTQAVKGGLVVD--AG 136

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 664
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +  + +E 
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEK 194

Query: 665 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 721
              +L  G ++ G V  +T     + +   G   G +    ++ DH++  +    V+  G
Sbjct: 195 VFAELQPGDVIEGKVARMTNFGAFIDL---GGVDGLVHVSEISYDHVDKPS---DVLTAG 248

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            +   ++L +D E   + LS K +L      +   A     +SV+ G V  +   G FV 
Sbjct: 249 QDVKVKVLSVDPERERISLSIKQTLPGPWDDIEEKAP---VDSVLTGTVKRLTSFGAFVE 305

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+      A  +     GQ V+  ++ V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVISVDPEHQRLGLSMK 356


>gi|224532124|ref|ZP_03672756.1| ribosomal protein S1 [Borrelia valaisiana VS116]
 gi|224511589|gb|EEF81995.1| ribosomal protein S1 [Borrelia valaisiana VS116]
          Length = 551

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 160/375 (42%), Gaps = 44/375 (11%)

Query: 480 ILKASAFEGLVF---THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
           IL     E L F    +  ++   ++KGKV+A  S G  +Q    V    P    S+   
Sbjct: 77  ILSVEKLESLNFQDKVNEYIQNKKIIKGKVLAELSNGYKIQINENVSGFMPFYLSSK--- 133

Query: 537 VKPGKKFKVGAELVFRVLGVKSK--------RITVTHKKTLVKSKLAILSSYAEATDRLI 588
               +K K G  + F +L             R T+  ++ LVK ++ ++SSY E     +
Sbjct: 134 -SKDEKLKRGLIVEFYILEASESDGLRLILDRRTLERERELVK-RIELVSSYNEED---V 188

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G + +I ++G  V+  N V G   +  +  +          VG  +K +I+   P + 
Sbjct: 189 VDGVVDRITEYGAIVKIKNFVTGILHKRNIAFNQVENIEDFVRVGDKLKLKIIKINPQTG 248

Query: 649 RINLSFMMKPTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAK--GYSKGTIPTE 702
           ++ LS  +K  + +  D V    K+ S+V G V  + P   V+ + ++  G+        
Sbjct: 249 KMELS--LKALKANPWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFL------- 299

Query: 703 HLADHLEHATVMKS---VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
           H++ +     V+KS   +IK G   + ++L +D E+  + L  K    N  ++L    + 
Sbjct: 300 HIS-NFSWIRVIKSPQELIKLGQIVEVKILEIDKENQRISLGIKQINENPWERL----TE 354

Query: 759 IHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            +P   V+ G V NI +TG FV     +  +  +      +  D  + + +G  V   +L
Sbjct: 355 KYPIGKVIQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGDLVNGKVL 414

Query: 818 DVNSETGRITLSLKQ 832
           +V+     + L +KQ
Sbjct: 415 EVDRRKRNVRLGIKQ 429



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 123/286 (43%), Gaps = 50/286 (17%)

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE-LQEFQRRFHIGKAVTGHVLSINK 1225
            V G V ++    A++ I   +   L   + A+   E +++F R   +G  +   ++ IN 
Sbjct: 189  VDGVVDRITEYGAIVKIKNFVTGILHKRNIAFNQVENIEDFVR---VGDKLKLKIIKINP 245

Query: 1226 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPH 1284
            +   + L L+  +    D +VD+         ++ D IV G++ KIL    G V+++   
Sbjct: 246  QTGKMELSLKALKANPWD-SVDVK--------YKIDSIVKGKVVKILPF--GAVIELDSE 294

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
            L G +H +    I V             P      GQ V+ K+LEI +          + 
Sbjct: 295  LSGFLHISNFSWIRVIKS----------PQELIKLGQIVEVKILEIDKE---------NQ 335

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            R SL G+   N        + P + L   E      ++QG V N+T  G F+ +   +DA
Sbjct: 336  RISL-GIKQIN--------ENPWERL--TEKYPIGKVIQGVVTNITKTGAFVNIEEGIDA 384

Query: 1405 KVLLSNLSDGYVES--PEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448
             V  S     ++E   PE+ F IG LV G+VL V+   + V + +K
Sbjct: 385  YV--SKFDISWLEEIDPEEYFKIGDLVNGKVLEVDRRKRNVRLGIK 428



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 99/217 (45%), Gaps = 16/217 (7%)

Query: 444 DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LATGILKASAFEGLVFTHSDVKPGM 500
           ++A  +V  +E   + G  ++++I+      G   L+   LKA+ ++ +     DVK  +
Sbjct: 217 NIAFNQVENIEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV-----DVKYKI 271

Query: 501 --VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
             +VKGKV+ +  FGA+++    +     + + S   ++K P +  K+G  +  ++L + 
Sbjct: 272 DSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQIVEVKILEID 331

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +++RI++  K+        +   Y       +  G +T I K G FV    G+  +  +
Sbjct: 332 KENQRISLGIKQINENPWERLTEKYPIGK---VIQGVVTNITKTGAFVNIEEGIDAYVSK 388

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
            ++      +P   + +G +V  +++      R + L
Sbjct: 389 FDISWLEEIDPEEYFKIGDLVNGKVLEVDRRKRNVRL 425



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 37/194 (19%)

Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
            S  +   VV G V  I E G  V+    +TG   +      Q  ++     VG  ++  
Sbjct: 180 VSSYNEEDVVDGVVDRITEYGAIVKIKNFVTGILHKRNIAFNQVENIEDFVRVGDKLKLK 239

Query: 816 ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 875
           I+ +N +TG++ LSLK    +  D+  ++                           + I 
Sbjct: 240 IIKINPQTGKMELSLKALKANPWDSVDVK---------------------------YKID 272

Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV--------ESGSVIQAAILDV 927
           S+++GKV +   FG V+  +  S++ GF+     +   V        + G +++  IL++
Sbjct: 273 SIVKGKVVKILPFGAVIELD--SELSGFLHISNFSWIRVIKSPQELIKLGQIVEVKILEI 330

Query: 928 AKAERLVDLSLKTV 941
            K  + + L +K +
Sbjct: 331 DKENQRISLGIKQI 344


>gi|145298754|ref|YP_001141595.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|418360897|ref|ZP_12961560.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
           01-B526]
 gi|142851526|gb|ABO89847.1| ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|356687880|gb|EHI52454.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
           01-B526]
          Length = 556

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLQEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKV 245

Query: 554 LGVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  V+   K+      +AI   Y E T RL   G +T +  +GCFV    GV+G
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPETT-RL--SGRVTNLTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    PS + +VG VV   ++      RRI+L        P ++  +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDVVDVMVLDIDEERRRISLGLKQCKSNPWQLFAETHA 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   +    ++V   K G E +
Sbjct: 363 K-GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  SD       ++V G V  +   G  +     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLSDN---KKGAIVKGKVTEVDAKGAVIELADG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   S A   +  D +    VG  V +  + V+ +   ++LS++
Sbjct: 474 VEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 20/219 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           K++ ++    TH+    G  V GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KSNPWQLFAETHA---KGDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNNQGE 403

Query: 541 ---KKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
              ++FK G E+   VL V  + +RI++  K+         LS   +     I  G +T+
Sbjct: 404 EAVREFKKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGA---IVKGKVTE 460

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++  G  +   +GV+G+   S+   D   + + +  VG  V+ + M     +R ++LS  
Sbjct: 461 VDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV-VYVIAKG 693
            K      D+ V + SL +   +VV  NA++  +  AKG
Sbjct: 521 AKD---EADERVAIDSL-NQQEEVVFSNAMMEAFKAAKG 555



 Score = 40.8 bits (94), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V G +K++T  G FI L   +D  V LS++S +   E   +EF  G  +   VL V+P  
Sbjct: 367  VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIEAVVLQVDPER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K  +    ++     LS+   G IV G++  V++ G  I +
Sbjct: 427  ERISLGVKQIEEDPFNKY----LSDNKKGAIVKGKVTEVDAKGAVIEL 470



 Score = 40.4 bits (93), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 392 NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+ L    H +      K+  I D    + +D G+  L+ +          ++ ++  E
Sbjct: 352 NPWQLFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNNQGE 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK  E   V +++   R    L    ++   F   +   SD K G +VKGKV 
Sbjct: 404 EAVREF-KKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYL---SDNKKGAIVKGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            VD+ GA+++   GV+        +   +        VG E+  + +GV  K  TV+
Sbjct: 460 EVDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVS 516


>gi|392989866|ref|YP_006488459.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
 gi|392337286|gb|AFM71568.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
          Length = 410

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++  G V+ G+V  +  FGA V   GG+  L  +  +S   + KP     VG E+  +V
Sbjct: 200 ANIHEGDVIDGRVARITDFGAFVDL-GGIDGLVHVSEISHSHVAKPSDALAVGDEVKVKV 258

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L +  + +R++++ K TL      I     +AT   +  G + ++   G FV  + GV+G
Sbjct: 259 LSINPEQERVSLSIKDTLPGPWTDI---EEKATVGSVLDGKVKRLTSFGAFVEVFPGVEG 315

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P  + H G  V+ +++   P   RI LS 
Sbjct: 316 LVHISQISHKHIATPHEVLHEGDEVQVKVLEVHPEEHRIALSI 358



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 147/352 (41%), Gaps = 59/352 (16%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL   P  + + +  VG  ++  ++S+I   +  N S+++   R+      
Sbjct: 51  GVEGVVPAKELSTSPVEDINEVVKVGDTLELVVISTIGKDKE-NGSYLLSKRRLDAKKVW 109

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH-LADHLEHATVMKSVIK 719
           +D+ K    G+++   V  V    +VV V  +G+   ++  +H +AD  E+         
Sbjct: 110 EDIEKDFQAGNIIEAPVTNVVKGGLVVDVGVRGFVPASMVEDHFVADFSEYK-------- 161

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGC 777
            G      +V    S N L+ +  +++ + ++       ++IH   V+ G V  I + G 
Sbjct: 162 -GETLAFKIVEIEPSENRLILSHKAVVETEKEEKKKEILANIHEGDVIDGRVARITDFGA 220

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV  LG + G    S+      A  S    VG  V+  +L +N E  R++LS+K +    
Sbjct: 221 FVD-LGGIDGLVHVSEISHSHVAKPSDALAVGDEVKVKVLSINPEQERVSLSIKDTLPGP 279

Query: 838 -TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            TD         +EEK                     +GSV++GKV     FG  V  E 
Sbjct: 280 WTD---------IEEKAT-------------------VGSVLDGKVKRLTSFGAFV--EV 309

Query: 897 HSDVYGF-----ITHHQLAG--ATVESGSVIQAAILDVAKAERLVDLSLKTV 941
              V G      I+H  +A     +  G  +Q  +L+V   E  + LS+K +
Sbjct: 310 FPGVEGLVHISQISHKHIATPHEVLHEGDEVQVKVLEVHPEEHRIALSIKAL 361



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 34/203 (16%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            IHEGD++ GR+++I     G  V +G  + G VH +E+ +  V+ P         D L+ 
Sbjct: 202  IHEGDVIDGRVARITDF--GAFVDLG-GIDGLVHVSEISHSHVAKP--------SDALAV 250

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
             DE   VK KVL I+        V LS++ +L                 PG   +  E  
Sbjct: 251  GDE---VKVKVLSINPEQE---RVSLSIKDTL-----------------PGPWTDIEEKA 287

Query: 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1436
            +   ++ G VK +TS G F+ +   ++  V +S +S  ++ +P +    G  V  +VL V
Sbjct: 288  TVGSVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVQVKVLEV 347

Query: 1437 EPLSKRVEVTLKTSDSRTASQSE 1459
             P   R+ +++K  + + AS+ E
Sbjct: 348  HPEEHRIALSIKALEEKPASEEE 370



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++ G V  +T  G F+ L   +D  V +S +S  +V  P     +G  V  +VLS+ P  
Sbjct: 207  VIDGRVARITDFGAFVDLG-GIDGLVHVSEISHSHVAKPSDALAVGDEVKVKVLSINPEQ 265

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +RV +++K  D+     ++I   +   VG ++ G++KR+ S+G F+ +
Sbjct: 266  ERVSLSIK--DTLPGPWTDIEEKAT--VGSVLDGKVKRLTSFGAFVEV 309


>gi|365902715|ref|ZP_09440538.1| 30S ribosomal protein S1 [Lactobacillus malefermentans KCTC 3548]
          Length = 421

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  V+G V  +  FGA V   GGV  L  +  +S   + KP    KVG ++  ++L V  
Sbjct: 201 GDTVEGTVARLTDFGAFVDL-GGVDGLVHVSEISYERVGKPSDVLKVGEKVNVKILSVDE 259

Query: 559 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
              RI+++ K+TL +    I     E     +  G + ++   G FV  + GV+G    S
Sbjct: 260 DRNRISLSIKQTLPEPWDGIEEKAPEGA---VLEGTVKRLTSFGAFVEVFPGVEGLVHIS 316

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDD 665
           ++  +    P+ +   G+ V  +++   P   R+ LS    + KP  ++E+D
Sbjct: 317 QIAHEHIATPNDVLKTGEKVNVKVLEVHPERHRLALSIKALIEKPAGLAEED 368



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 154/385 (40%), Gaps = 61/385 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           G++G  P+ E+   P  +   +  VG  +   ++S I   +    S+++   R++     
Sbjct: 47  GIEGVVPQKEISTKPVEDIRDVVKVGDKLDLVVISKIGNDKE-GGSYLLSVRRLAARKIW 105

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           DD+ K    G  ++  V  V    +VV    +G+   ++ T+H  + L            
Sbjct: 106 DDIQKEYEAGHTLTAQVTQVVKGGLVVDAGVRGFVPASMITDHFVEDLNQFK------DQ 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV---VHGYVCNIIETGC 777
             EF +++ ++   + L+LS  +  I   Q+       +   +V   V G V  + + G 
Sbjct: 160 SLEF-KIIEIEPSENRLILS--HRAIVEEQKAEGREKVMETLTVGDTVEGTVARLTDFGA 216

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV  LG + G    S+    +    S    VG+ V   IL V+ +  RI+LS+KQ+    
Sbjct: 217 FVD-LGGVDGLVHVSEISYERVGKPSDVLKVGEKVNVKILSVDEDRNRISLSIKQTLPEP 275

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D         +EEK                      G+V+EG V     FG  V  E  
Sbjct: 276 WDG--------IEEKAPE-------------------GAVLEGTVKRLTSFGAFV--EVF 306

Query: 898 SDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR---FR 947
             V G      I H  +A     +++G  +   +L+V      + LS+K   I++     
Sbjct: 307 PGVEGLVHISQIAHEHIATPNDVLKTGEKVNVKVLEVHPERHRLALSIKA-LIEKPAGLA 365

Query: 948 EANSNRQAQKKKRKREASKDLGVHQ 972
           E ++N ++++   K    ++  V++
Sbjct: 366 EEDNNNESKRSNNKPSKRRNNNVNE 390



 Score = 40.4 bits (93), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 145/352 (41%), Gaps = 30/352 (8%)

Query: 495 DVKPGMVVKGKVIAV-DSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL--- 549
           +VK G VVKG+V+A+ D   AIV   G G++ + P   +S   +       KVG +L   
Sbjct: 19  EVKIGDVVKGEVLAIDDDKQAIVGIEGAGIEGVVPQKEISTKPVEDIRDVVKVGDKLDLV 78

Query: 550 -VFRVLGVKSKRITVTHKKTLVKSKL--AILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
            + ++   K     +   + L   K+   I   Y EA   L     +T++ K G  V   
Sbjct: 79  VISKIGNDKEGGSYLLSVRRLAARKIWDDIQKEY-EAGHTLTAQ--VTQVVKGGLVVDA- 134

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF------MMKPTR 660
            GV+GF P S +  D   E  + +   Q ++ +I+   P+  R+ LS            R
Sbjct: 135 -GVRGFVPASMI-TDHFVEDLNQFK-DQSLEFKIIEIEPSENRLILSHRAIVEEQKAEGR 191

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               + + +G  V G V  +T     V +   G   G +    ++   E       V+K 
Sbjct: 192 EKVMETLTVGDTVEGTVARLTDFGAFVDL---GGVDGLVHVSEIS--YERVGKPSDVLKV 246

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G + + ++L +D + + + LS K +L      +   A      +V+ G V  +   G FV
Sbjct: 247 GEKVNVKILSVDEDRNRISLSIKQTLPEPWDGIEEKAPE---GAVLEGTVKRLTSFGAFV 303

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                + G    S+      A  +     G+ V   +L+V+ E  R+ LS+K
Sbjct: 304 EVFPGVEGLVHISQIAHEHIATPNDVLKTGEKVNVKVLEVHPERHRLALSIK 355


>gi|225680122|gb|EEH18406.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb03]
          Length = 490

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 191/468 (40%), Gaps = 54/468 (11%)

Query: 9   QKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERD 68
           Q+K +K G       K+Q +NS+   +   +A  +++  +++ P+FPRGGG+ LT  E+ 
Sbjct: 30  QRKGAKGG------KKSQAENSRDSSDLPSKAPAVSVLREEE-PMFPRGGGNILTPLEQK 82

Query: 69  EIH--AEVDAEFEA------VERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
           +I   A  D  FE        +  + + +   KK  +    +             S    
Sbjct: 83  QIQIQATRDVLFEQNGAAGQQDDNMDEADGGHKKSGKSSGVKVKKVKSKAKKQAASEDPT 142

Query: 121 RYANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-----------------L 160
           + A +I     K I  G K+ G V+ +N  D+ + LP  L G                 L
Sbjct: 143 KQAVRIEGLNFKRIVIGSKVLGQVSSINAHDIGLSLPNNLTGYVPLTSISRTFQQKIEKL 202

Query: 161 ARAADALDPILDNEIEANEDNL-LPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSL 216
             + +  +   D+ +  +E++L L + F +GQ +   V   + + K     GK+ I LS+
Sbjct: 203 LNSNEDENEGSDDGVSDDEEDLDLKSYFELGQYLRASVTATESETKNPQTKGKKHIQLSV 262

Query: 217 RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGI-D 273
                  GLS   +     + A V S+EDHG ++  GL      GF+    +  +  +  
Sbjct: 263 DPRDANSGLSKSDMVVNTTVQASVVSVEDHGLVMDLGLDDGQTKGFMSSKEIPPDLEVSQ 322

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQS 331
           +K G +   +V   +    VV LS++ P   S   +  L    +I+  +PG      +  
Sbjct: 323 IKEGSVFLCLVTGHNANGSVVKLSANLPAAGSIKKSHYLTSAPTINSFLPGTAAEILLNE 382

Query: 332 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-- 389
           +   G+    +      VD+    +T  T N    Y+   K+  R++   PT   + L  
Sbjct: 383 VTSTGMAGKIMGMLDAVVDLVQSGSTTGTENLTTKYHVGAKIKGRLICTFPTVEPLKLGF 442

Query: 390 -------TLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDI 429
                    +P +L   +    +  V  I  ++KV +V+ GLG+ + I
Sbjct: 443 SILEHVVKFSPTVLEQYSTSEDIPAVSAIVPEAKVTKVEPGLGVYVQI 490


>gi|240849755|ref|YP_002971143.1| 30S ribosomal protein S1 [Bartonella grahamii as4aup]
 gi|240266878|gb|ACS50466.1| 30S ribosomal protein S1 [Bartonella grahamii as4aup]
          Length = 566

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 137/615 (22%), Positives = 238/615 (38%), Gaps = 98/615 (15%)

Query: 486  FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            FE L+   F  +D+  G VVKG+VIA++   AI+    G+K    +P + EF     G K
Sbjct: 11   FEALLTESFQTNDLNEGSVVKGRVIAIEKDMAIID--AGLKVEGRIP-LKEF-----GAK 62

Query: 543  FKVGAELVFRVLGVKSKRI-TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI---EK 598
             K G+  V   + V  +RI     +  L + K     S+    ++      +  +   + 
Sbjct: 63   AKDGSLQVGDEVEVYIERIENAMGEAVLSREKARREESWVRLEEKFNAGARVDGVIFSQV 122

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSF 654
             G F    +G   F PRS++ + P  + S + H  Q  +     R   +I  SRR  L  
Sbjct: 123  KGGFTVDLDGAVAFLPRSQVDIRPIRDVSPLMHNSQSFEILKMDRRRGNIVVSRRTVLEE 182

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEH 710
                 R      ++   +V GVV  +T     V +   G   G +    +A    +H   
Sbjct: 183  SRAEQRSEIVQNLEENQIVEGVVKNITDYGAFVGL---GGIDGLLHVTDMAWRRVNHPSE 239

Query: 711  ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVV 765
               +   IK      Q++ ++ ++  + L  K        QL SD     S  +P    +
Sbjct: 240  VLTIGQTIKV-----QIIRINQDTHRISLGMK--------QLESDPWESISVRYPIGKKI 286

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
             G V NI + G FV     + G    S+ +   +     K     Q V   +L+++    
Sbjct: 287  TGAVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNVHPGKILSTSQEVEVVVLEIDPSKR 346

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            RI+L LKQ+  +  +A                           +   F + S IEG+V  
Sbjct: 347  RISLGLKQTFENPWEA---------------------------FANKFPVNSQIEGEVKN 379

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDL 936
              +FG+ +  E   DV G +    L           T   G +++A +LDV   +  + L
Sbjct: 380  KTEFGLFIGLE--GDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDVDIEKERISL 437

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN-- 994
             +K +  D+  EA              AS +L     V   V  V +N + + L ++N  
Sbjct: 438  GIKQLSSDKVGEA-------------AASGELRKGAVVTCEVIAVNDNDIGVKLIDHNLE 484

Query: 995  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR 1054
             +I  A ++    ++ P++ F  GQ V A + A    +    + +    I+E + + ++ 
Sbjct: 485  TTIRRADLARDRDEQRPER-FAIGQKVDARITAFDKKTRKISVSIKALEIAEEKEAVAQY 543

Query: 1055 AKKKSSYDVGSLVQA 1069
                S   +G ++ A
Sbjct: 544  GSTDSGASLGDILGA 558



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 175/444 (39%), Gaps = 76/444 (17%)

Query: 726  QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            ++L +D    N+++S +  L  S A+Q      ++  N +V G V NI + G FV  LG 
Sbjct: 161  EILKMDRRRGNIVVSRRTVLEESRAEQRSEIVQNLEENQIVEGVVKNITDYGAFV-GLGG 219

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    +     +    S+   +GQ+++  I+ +N +T RI+L +KQ            
Sbjct: 220  IDGLLHVTDMAWRRVNHPSEVLTIGQTIKVQIIRINQDTHRISLGMKQ------------ 267

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
                       L+S       ++    + IG  I G V    D+G  V  E       H 
Sbjct: 268  -----------LESDPWESISVR----YPIGKKITGAVTNITDYGGFVEIEPGIEGLIHV 312

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR----- 953
                +   +   G  + +   ++  +L++  ++R + L LK  F + + EA +N+     
Sbjct: 313  SEMSWTKKNVHPGKILSTSQEVEVVVLEIDPSKRRISLGLKQTFENPW-EAFANKFPVNS 371

Query: 954  QAQKK-KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQ 1012
            Q + + K K E    +G+   V+ +V         LS  ++N   G   +  YN      
Sbjct: 372  QIEGEVKNKTEFGLFIGLEGDVDGMVH--------LSDLDWNRP-GEQVIDTYN------ 416

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET---ETSSSKRAKKKSSYDVGSLVQA 1069
                 G  V A V+ +       R+ L +K +S     E ++S   +K      G++V  
Sbjct: 417  ----KGDIVKAVVLDVDIEKE--RISLGIKQLSSDKVGEAAASGELRK------GAVVTC 464

Query: 1070 EITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
            E+  +   ++ +K         I   ++  D+    E     F IGQ V ARI A   K 
Sbjct: 465  EVIAVNDNDIGVKLIDHNLETTIRRADLARDRD---EQRPERFAIGQKVDARITAFDKKT 521

Query: 1129 DMKKSFLWELSIKPSMLTVSEIGS 1152
                  +  L I      V++ GS
Sbjct: 522  RKISVSIKALEIAEEKEAVAQYGS 545



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 5/119 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L  N IV+G VKN+T  G F+ L   +D  + +++++   V  P +   IG+ + 
Sbjct: 190  EIVQNLEENQIVEGVVKNITDYGAFVGLG-GIDGLLHVTDMAWRRVNHPSEVLTIGQTIK 248

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +++ +   + R+ + +K  +S       +       +G  + G +  +  YG F+ IE
Sbjct: 249  VQIIRINQDTHRISLGMKQLESDPWESISV----RYPIGKKITGAVTNITDYGGFVEIE 303


>gi|218778787|ref|YP_002430105.1| 30S ribosomal protein S1 [Desulfatibacillum alkenivorans AK-01]
 gi|218760171|gb|ACL02637.1| ribosomal protein S1 [Desulfatibacillum alkenivorans AK-01]
          Length = 616

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 92/437 (21%), Positives = 175/437 (40%), Gaps = 52/437 (11%)

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATG---ILKASAF 486
           S  +  PA++  S V    VR L+     G     ++L + R    +      IL+    
Sbjct: 171 SVDIGVPAFLPGSQVDLRPVRDLDSMV--GKVFTFKVLKYNRKRSNIVLSRRVILEKERE 228

Query: 487 EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
           E    T  ++  G VV+G V  +  +G  V   GG+  L  +  +S   +  P + F VG
Sbjct: 229 EQRSSTLQNIHEGKVVEGVVKNITEYGVFVDL-GGIDGLLHITDISWGRVKHPSELFGVG 287

Query: 547 AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT----HGWITKIEKHGCF 602
             +  +VL +  +R  V+     +K        +  A+DR        G +  +  +G F
Sbjct: 288 QTITVKVLDLDLERERVSLGMKQLKE-----DPWTTASDRYPVGERVSGKVVSLTDYGAF 342

Query: 603 VRFYNGVQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
           V    G++G    SE+        PS +  VG  ++  ++   P++RR++L   MK    
Sbjct: 343 VELEEGIEGLIHVSEMSWTRKIRHPSKVVSVGDDLEAVVLDIKPSNRRVSLG--MKQVAP 400

Query: 662 SEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
           +  D++     +G+ + G +  +T   + +     G  +G     H++D     +  K +
Sbjct: 401 NPWDVIGEKYPIGTTIEGRIKNITDFGMFI-----GIDEGIDGLVHISD----ISWTKRI 451

Query: 718 IKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVV 765
             PG  + +       +L +D E+    L  K        QL  D     +      + V
Sbjct: 452 NHPGDVYKKGDEVRAIVLHIDRENERFSLGIK--------QLEPDPWETISERYQVGTKV 503

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
           +G + ++ + G FV     + G    S+    +       + VG +V + ++++N +  R
Sbjct: 504 NGLITSVTDFGIFVELEEGIEGLVHVSEVAKEKVKTPVGQFNVGDTVETVVVNINPKERR 563

Query: 826 ITLSLKQSCCSSTDASF 842
           I LS+K+      +  F
Sbjct: 564 IGLSIKRLEEDEQEGYF 580



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++++    +V+G VKN+T  G F+ L   +D  + ++++S G V+ P + F +G+ +  +
Sbjct: 235  LQNIHEGKVVEGVVKNITEYGVFVDLG-GIDGLLHITDISWGRVKHPSELFGVGQTITVK 293

Query: 1433 VLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL ++   +RV + +K    D  T +           VG+ V G++  +  YG F+ +E
Sbjct: 294  VLDLDLERERVSLGMKQLKEDPWTTAS------DRYPVGERVSGKVVSLTDYGAFVELE 346


>gi|162149228|ref|YP_001603689.1| 30S ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545034|ref|YP_002277263.1| 30S ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787805|emb|CAP57403.1| 30S ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532711|gb|ACI52648.1| ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
          Length = 571

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 201/491 (40%), Gaps = 47/491 (9%)

Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL 278
           +LL + L  +T  +G V+T  V  + D   I+  GL S      +      +  DVKPG 
Sbjct: 20  TLLDETLGRDTAFDGSVVTGRVVRLTDEFAIVDVGLKSEGRVALKEFGPPGASPDVKPGD 79

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS--ILENG 336
           +++  V   +     + LS +     +  T   K    +  V G +   RV+    ++ G
Sbjct: 80  VIELFVERYEDRDGSIVLSREKARREEAWTNLEKAFEGNQRVNGTIYG-RVKGGFTVDLG 138

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
             ++FL      VDI  +++  P       +        +IL +D     + ++    L 
Sbjct: 139 GAMAFLP--GSQVDIRPVRDVTPLMGVPQPF--------QILKMDRARGNIVVSRRAVLE 188

Query: 397 HNRAPPSH-----VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             RA         +K G I D   VV+     G  +D+          + ++D+A + + 
Sbjct: 189 ETRAEQRSELIQGLKEGMILD--GVVKNITDYGAFVDLGGVD----GLLHVTDIAWKRIN 242

Query: 452 KLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIA 508
              +  + G  VRV+++ F    + ++ G+  L+A  +E +   +    PG    G+V  
Sbjct: 243 HPSEALQIGQPVRVQVIRFNPDTQRISLGMKQLEADPWENVAIKYP---PGARYSGRVTN 299

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLGVKS--KRIT 562
           +  +GA V+   GV+ L    H+SE    K    PGK      E+   VL V S  +RI+
Sbjct: 300 ITDYGAFVELEPGVEGLV---HVSEMSWTKKNVHPGKIVATSQEVDVMVLDVDSGKRRIS 356

Query: 563 VTHKKTLVKSKLAILSSYAEATDRLIT-HGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
           +  K+     +      +AE      T  G I  I + G F+     + G    S+L  D
Sbjct: 357 LGLKQV----QRNPWEQFAEEHKIGSTVEGEIRNITEFGLFIGLSADIDGMVHMSDLSWD 412

Query: 622 -PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVSGVVD 678
            PG    + Y  GQVV+ +++       RI+L         + D L  V+ G++V+ +V 
Sbjct: 413 EPGEVAMTHYEKGQVVQAKVLDVDVEKERISLGIKQLHEDPAADALGKVQKGAVVTCIVT 472

Query: 679 VVTPNAVVVYV 689
            V  N + V V
Sbjct: 473 AVQSNGIEVKV 483



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 141/345 (40%), Gaps = 39/345 (11%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 560
           VKG    VD  GA+   PG    + P+  ++            +G    F++L +   R 
Sbjct: 129 VKGG-FTVDLGGAMAFLPGSQVDIRPVRDVTPL----------MGVPQPFQILKMDRARG 177

Query: 561 -ITVTHKKTLVKSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
            I V+ +  L +++    S   +   + +I  G +  I  +G FV    GV G    +++
Sbjct: 178 NIVVSRRAVLEETRAEQRSELIQGLKEGMILDGVVKNITDYGAFVDL-GGVDGLLHVTDI 236

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGV 676
                  PS    +GQ V+ +++   P ++RI+L          E+  +K   G+  SG 
Sbjct: 237 AWKRINHPSEALQIGQPVRVQVIRFNPDTQRISLGMKQLEADPWENVAIKYPPGARYSGR 296

Query: 677 VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG------YEFDQLLVL 730
           V  +T     V +          P      H+   +  K  + PG       E D ++VL
Sbjct: 297 VTNITDYGAFVELE---------PGVEGLVHVSEMSWTKKNVHPGKIVATSQEVD-VMVL 346

Query: 731 DNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           D +S    + L  K    N  +Q    A      S V G + NI E G F+     + G 
Sbjct: 347 DVDSGKRRISLGLKQVQRNPWEQF---AEEHKIGSTVEGEIRNITEFGLFIGLSADIDGM 403

Query: 789 APRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSETGRITLSLKQ 832
              S     +  +++ T+Y  GQ V++ +LDV+ E  RI+L +KQ
Sbjct: 404 VHMSDLSWDEPGEVAMTHYEKGQVVQAKVLDVDVEKERISLGIKQ 448



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 139/354 (39%), Gaps = 40/354 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL- 554
           +K GM++ G V  +  +GA V   GGV  L  +  ++   I  P +  ++G  +  +V+ 
Sbjct: 202 LKEGMILDGVVKNITDYGAFVDL-GGVDGLLHVTDIAWKRINHPSEALQIGQPVRVQVIR 260

Query: 555 -GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               ++RI++  K+        +   Y          G +T I  +G FV    GV+G  
Sbjct: 261 FNPDTQRISLGMKQLEADPWENVAIKYPPGAR---YSGRVTNITDYGAFVELEPGVEGLV 317

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SE+        P  +    Q V   ++      RRI+L          E   +  K+G
Sbjct: 318 HVSEMSWTKKNVHPGKIVATSQEVDVMVLDVDSGKRRISLGLKQVQRNPWEQFAEEHKIG 377

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD------------HLEHATVMKSVI 718
           S V G +  +T   + +     G S       H++D            H E   V+++  
Sbjct: 378 STVEGEIRNITEFGLFI-----GLSADIDGMVHMSDLSWDEPGEVAMTHYEKGQVVQA-- 430

Query: 719 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGC 777
                  ++L +D E   + L  K    + A    +DA   +   +VV   V  +   G 
Sbjct: 431 -------KVLDVDVEKERISLGIKQLHEDPA----ADALGKVQKGAVVTCIVTAVQSNGI 479

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            V+    LTGF  R++    +     + + VG+ V + I+ V+    ++ L+++
Sbjct: 480 EVKVDDVLTGFIRRAELARDKADQRPERFAVGERVDAKIVSVDRAARKLALTIR 533



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E I+ L   MI+ G VKN+T  G F+ L   +D  + +++++   +  P +   IG+ V 
Sbjct: 197  ELIQGLKEGMILDGVVKNITDYGAFVDLG-GVDGLLHVTDIAWKRINHPSEALQIGQPVR 255

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV----GDIVIGQIKRVESYGLFI 1486
             +V+   P ++R+ + +K        Q E +   N+ +    G    G++  +  YG F+
Sbjct: 256  VQVIRFNPDTQRISLGMK--------QLEADPWENVAIKYPPGARYSGRVTNITDYGAFV 307

Query: 1487 TIE 1489
             +E
Sbjct: 308  ELE 310



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G ++N+T  G FI LS  +D  V +S+LS D   E     +  G++V  +VL V+   
Sbjct: 380  VEGEIRNITEFGLFIGLSADIDGMVHMSDLSWDEPGEVAMTHYEKGQVVQAKVLDVDVEK 439

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN--TNLVR 1495
            +R+ + +K      A+ +    L  +  G +V   +  V+S G+ + +++  T  +R
Sbjct: 440  ERISLGIKQLHEDPAADA----LGKVQKGAVVTCIVTAVQSNGIEVKVDDVLTGFIR 492



 Score = 40.4 bits (93), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK----KFKVGAELVFR 552
           K G  V+G++  +  FG  +     +  +    HMS+    +PG+     ++ G  +  +
Sbjct: 375 KIGSTVEGEIRNITEFGLFIGLSADIDGMV---HMSDLSWDEPGEVAMTHYEKGQVVQAK 431

Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL V  + +RI++  K+         L    +     +    +T ++ +G  V+  + + 
Sbjct: 432 VLDVDVEKERISLGIKQLHEDPAADALGKVQKGA---VVTCIVTAVQSNGIEVKVDDVLT 488

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
           GF  R+EL  D   +    + VG+ V  +I+S   A+R++ L+   +     +  + + G
Sbjct: 489 GFIRRAELARDKADQRPERFAVGERVDAKIVSVDRAARKLALTIRGREVEEDKQAINEYG 548

Query: 671 SLVSG 675
           S  SG
Sbjct: 549 SSDSG 553


>gi|163793689|ref|ZP_02187663.1| Ribosomal protein S1 [alpha proteobacterium BAL199]
 gi|159180800|gb|EDP65317.1| Ribosomal protein S1 [alpha proteobacterium BAL199]
          Length = 568

 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 170/412 (41%), Gaps = 46/412 (11%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+ S  E      + +K GMV+ G V  +  +GA V   GGV  L  +  ++   I  P
Sbjct: 179 VLEESRAEARSELVASLKEGMVLSGVVKNITDYGAFVDL-GGVDGLLHVTDIAWRRINHP 237

Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  ++G  +  +V+   S  +RI++  K+        +   Y   T      G +T I 
Sbjct: 238 TEALQIGQTVKVQVIRFNSETQRISLGMKQLEADPWEGVDVKYPVGTK---FTGRVTNIT 294

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-- 654
            +G FV    G++G    SE+        P  +    Q V+  I+   P  RRI+L    
Sbjct: 295 DYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMILDVDPNKRRISLGLKQ 354

Query: 655 -MMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---H 707
            M  P     D+       G+ + G V  +T   +  +V   G   G +   HL+D    
Sbjct: 355 CMGNPW----DEFASKYPTGTEIEGEVKNITEFGL--FVGLPGDIDGMV---HLSDIDWE 405

Query: 708 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 767
           +     ++S  K      ++L +D +   + L  K     ++    S A+ +    VV  
Sbjct: 406 IPGEEAIQSFKKGDMVKIKVLDVDTDKERISLGIKQL---TSDPFTSGAASLKKGVVVTC 462

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            V  I E G  V+    +TGF  ++     +     + + VG+ V + + ++++++ ++T
Sbjct: 463 TVTQITEGGIEVQLSDGMTGFIRKTDLSRERSEQRPERFAVGEKVDAKVTNIDAKSRKVT 522

Query: 828 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVI 878
           LS+K    +             EEK AM +  S  +G+ L    G I+G+ +
Sbjct: 523 LSIKARETA-------------EEKQAMAEYGSSDSGASL----GEILGAAL 557



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 161/410 (39%), Gaps = 61/410 (14%)

Query: 444 DVAEEEVRKLEKKYKEGSCVR---VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 500
           D+ E  V +LE +  E    R    R   +  LEG   G  + +   G++F+        
Sbjct: 72  DIVEVYVERLEDRNGEAMLSRDKARREEAWAQLEGAFNGNERVT---GVIFSR------- 121

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            VKG    VD  GA+   PG    + P+  +             +G    F++L +  +R
Sbjct: 122 -VKGG-FTVDLSGAVAFLPGSQVDIRPVRDIGPL----------LGTPQPFQILKMDRRR 169

Query: 561 --ITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
             I V+ +  L +S+    S   A   + ++  G +  I  +G FV    GV G    ++
Sbjct: 170 GNIVVSRRAVLEESRAEARSELVASLKEGMVLSGVVKNITDYGAFVDL-GGVDGLLHVTD 228

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--LGSLVSG 675
           +       P+    +GQ VK +++     ++RI+L          E   VK  +G+  +G
Sbjct: 229 IAWRRINHPTEALQIGQTVKVQVIRFNSETQRISLGMKQLEADPWEGVDVKYPVGTKFTG 288

Query: 676 VVDVVTPNAV----------VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
            V  +T              +V+V    ++K  +    +    +   VM           
Sbjct: 289 RVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVM----------- 337

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            +L +D     + L  K  + N   +    AS     + + G V NI E G FV   G +
Sbjct: 338 -ILDVDPNKRRISLGLKQCMGNPWDEF---ASKYPTGTEIEGEVKNITEFGLFVGLPGDI 393

Query: 786 TGFAPRSK---AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            G    S     + G+ A   +++  G  V+  +LDV+++  RI+L +KQ
Sbjct: 394 DGMVHLSDIDWEIPGEEA--IQSFKKGDMVKIKVLDVDTDKERISLGIKQ 441



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 167/416 (40%), Gaps = 70/416 (16%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            Q+L +D    N+++S +  L  S  +  S+  + +    V+ G V NI + G FV  LG 
Sbjct: 161  QILKMDRRRGNIVVSRRAVLEESRAEARSELVASLKEGMVLSGVVKNITDYGAFVD-LGG 219

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    +     +    ++   +GQ+V+  ++  NSET RI+L +KQ            
Sbjct: 220  VDGLLHVTDIAWRRINHPTEALQIGQTVKVQVIRFNSETQRISLGMKQ------------ 267

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
                       L++    G ++K    + +G+   G+V    D+G  V  E       H 
Sbjct: 268  -----------LEADPWEGVDVK----YPVGTKFTGRVTNITDYGAFVELEPGIEGLVHV 312

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
                +   +   G  V +   ++  ILDV   +R + L LK    + + E  S      +
Sbjct: 313  SEMSWTKKNVHPGKIVSTSQEVEVMILDVDPNKRRISLGLKQCMGNPWDEFASKYPTGTE 372

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ---- 1014
                           +   V+ + E  L + LP      G   +SD + +  P ++    
Sbjct: 373  ---------------IEGEVKNITEFGLFVGLP--GDIDGMVHLSDIDWE-IPGEEAIQS 414

Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEI 1074
            F  G  V   V+ + +     R+ L +K ++    +S   + KK     G +V   +T+I
Sbjct: 415  FKKGDMVKIKVLDVDTDKE--RISLGIKQLTSDPFTSGAASLKK-----GVVVTCTVTQI 467

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII---AKSNK 1127
                + ++   G  G I  T+++ ++S   E     F +G+ V A++    AKS K
Sbjct: 468  TEGGIEVQLSDGMTGFIRKTDLSRERS---EQRPERFAVGEKVDAKVTNIDAKSRK 520



 Score = 48.1 bits (113), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 158/377 (41%), Gaps = 53/377 (14%)

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA------ENSGIDVKPGLLLQG 282
           +++EGMVL+  VK+I D+G  +  G     G L   ++A          + +   + +Q 
Sbjct: 194 SLKEGMVLSGVVKNITDYGAFVDLG--GVDGLLHVTDIAWRRINHPTEALQIGQTVKVQ- 250

Query: 283 VVRSIDRTRKVVY----LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
           V+R    T+++      L +DP           +G+ +   V G   + RV +I + G  
Sbjct: 251 VIRFNSETQRISLGMKQLEADP----------WEGVDVKYPV-GTKFTGRVTNITDYGAF 299

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
           +       G V +  +  T    +     +  ++V   IL VDP  R + L L     NP
Sbjct: 300 VELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMILDVDPNKRRISLGLKQCMGNP 359

Query: 394 YLLHNRAPPSHVKV-GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV-----AE 447
           +       P+  ++ G++ + ++        GL + +P         V +SD+      E
Sbjct: 360 WDEFASKYPTGTEIEGEVKNITE-------FGLFVGLPG---DIDGMVHLSDIDWEIPGE 409

Query: 448 EEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           E +    + +K+G  V++++L      E ++ GI + ++ +      + +K G+VV   V
Sbjct: 410 EAI----QSFKKGDMVKIKVLDVDTDKERISLGIKQLTS-DPFTSGAASLKKGVVVTCTV 464

Query: 507 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
             +   G  VQ   G+        +S     +  ++F VG ++  +V  +  KS+++T++
Sbjct: 465 TQITEGGIEVQLSDGMTGFIRKTDLSRERSEQRPERFAVGEKVDAKVTNIDAKSRKVTLS 524

Query: 565 HKKTLVKSKLAILSSYA 581
            K      +   ++ Y 
Sbjct: 525 IKARETAEEKQAMAEYG 541


>gi|430761091|ref|YP_007216948.1| SSU ribosomal protein S1p [Thioalkalivibrio nitratireducens DSM
           14787]
 gi|430010715|gb|AGA33467.1| SSU ribosomal protein S1p [Thioalkalivibrio nitratireducens DSM
           14787]
          Length = 557

 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 151/368 (41%), Gaps = 37/368 (10%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G+VVKG V  +  +GA +   GG+  L  +  M+   +  P     +G E+  +VL
Sbjct: 188 NLQEGIVVKGIVKNLTDYGAFLDL-GGIDGLLHITDMAWKRVKHPSDVVNIGDEVDVKVL 246

Query: 555 GVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               +R+ V+   K L +     ++       R+   G +T I  +GCFV   +GV+G  
Sbjct: 247 KFDRERMRVSLGLKQLGEDPWENIARRYPTGTRIF--GRVTNITDYGCFVEIEDGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLV---K 668
             SE+   +    P     +G  V+  I+      RRI+L   MK  + +  DD      
Sbjct: 305 HVSEMDWTNKNVNPGKAVAIGDEVEVMILDLDEERRRISLG--MKQCQANPWDDFAANHN 362

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  V G +  +T   V V     G   G     HL+D        +++   K G E + 
Sbjct: 363 RGEKVRGTIKSITDFGVFV-----GLDGGIDGLIHLSDLSWQQPGEEAIRNFKKGDEVEA 417

Query: 727 -LLVLDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFV 779
            +L +D E   + L  K        QL  D      A H    S+V G V  +      V
Sbjct: 418 VVLSVDPERERISLGLK--------QLDRDPFSSFVAEHAK-GSIVSGVVKEVDAKAAVV 468

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSST 838
                + G   R+  +   R + ++T   VG  + +  + V+ +T  I+LS+K       
Sbjct: 469 ELADGIDGIL-RAADISRDRVEDARTVLNVGDKIEAKFMGVDKKTRAISLSIKAKDVQE- 526

Query: 839 DASFMQEH 846
           +A  MQ++
Sbjct: 527 EAEIMQDY 534



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L   ++V+G VKN+T  G F+ L   +D  + +++++   V+ P     IG  V 
Sbjct: 184  ELLKNLQEGIVVKGIVKNLTDYGAFLDLG-GIDGLLHITDMAWKRVKHPSDVVNIGDEVD 242

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1489
             +VL  +    RV + LK        +    N++  +  G  + G++  +  YG F+ IE
Sbjct: 243  VKVLKFDRERMRVSLGLK-----QLGEDPWENIARRYPTGTRIFGRVTNITDYGCFVEIE 297

Query: 1490 N 1490
            +
Sbjct: 298  D 298


>gi|158521992|ref|YP_001529862.1| 30S ribosomal protein S1 [Desulfococcus oleovorans Hxd3]
 gi|158510818|gb|ABW67785.1| ribosomal protein S1 [Desulfococcus oleovorans Hxd3]
          Length = 604

 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 152/351 (43%), Gaps = 38/351 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--V 556
           G VV+G V  +  +G  V   GG+  L  +  +S   +  P + F VG  +  +VL   +
Sbjct: 210 GQVVEGIVKNITEYGVFVDL-GGIDGLLHITDISWGRVRHPSELFTVGDNVTLKVLSFDL 268

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             K+I++  K+       +    Y        T G +  I  +G FV    GV+G    S
Sbjct: 269 DKKKISLGMKQLTPDPWESAAEKYPVGVK---TTGKVVSITNYGIFVELEEGVEGLIHVS 325

Query: 617 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 671
           E+        PS + ++G+ V   ++   P +RRI+L   MK    +  +++     +G+
Sbjct: 326 EISWTRKIRHPSKVVNIGEEVDAVVLDIQPGNRRISLG--MKQVEPNPWEVISEKYPVGT 383

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFDQ 726
           ++ G +  +T   + +     G         H++D      ++H +    + K G +  +
Sbjct: 384 VIEGRIKNITDFGLFI-----GIDDDIDGLVHISDISWTKRIKHPS---EIYKKG-DLVR 434

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHP-NSVVHGYVCNIIETGCFVRF 781
            +VL+ + +N     ++S+    +QL SD        +P  + V G V N+ + G FV  
Sbjct: 435 AVVLEIDKAN----ERFSM--GIKQLESDPWESVRDRYPIGTKVSGVVTNVTDFGIFVEL 488

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
              + G    S+    +       Y VG  + + +++VN++  +I LS+K+
Sbjct: 489 EEGIEGLVHVSEVSTERIKTPVGQYEVGAELTARVMNVNADERKIGLSIKR 539



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 44/369 (11%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
           +ET+ +G V+   VK+I ++G  +  G     G L   +++   G    P  L       
Sbjct: 204 METLADGQVVEGIVKNITEYGVFVDLG--GIDGLLHITDIS--WGRVRHPSELF---TVG 256

Query: 287 IDRTRKVVYLSSDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
            + T KV+    D   +S   K +T D    + +    G+  + +V SI   G+ +    
Sbjct: 257 DNVTLKVLSFDLDKKKISLGMKQLTPDPWESAAEKYPVGVKTTGKVVSITNYGIFVELEE 316

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLH 397
              G + +  +  T    +     N  ++V+A +L + P +R + L +     NP+ ++ 
Sbjct: 317 GVEGLIHVSEISWTRKIRHPSKVVNIGEEVDAVVLDIQPGNRRISLGMKQVEPNPWEVIS 376

Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKK 456
            + P   V  G I + +         GL + I          V ISD++  + ++   + 
Sbjct: 377 EKYPVGTVIEGRIKNITD-------FGLFIGIDD---DIDGLVHISDISWTKRIKHPSEI 426

Query: 457 YKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSF 512
           YK+G  VR  +L   +  E  + GI  L++  +E +     D  P G  V G V  V  F
Sbjct: 427 YKKGDLVRAVVLEIDKANERFSMGIKQLESDPWESV----RDRYPIGTKVSGVVTNVTDF 482

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS---------KRITV 563
           G  V+   G++ L  +  +S   I  P  +++VGAEL  RV+ V +         KR+ V
Sbjct: 483 GIFVELEEGIEGLVHVSEVSTERIKTPVGQYEVGAELTARVMNVNADERKIGLSIKRLDV 542

Query: 564 THKKTLVKS 572
              KTL+K 
Sbjct: 543 EDDKTLLKD 551



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 141/341 (41%), Gaps = 80/341 (23%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ-----------EFQRRFHI 1212
            G+ V G V  VD ++ L+ I    + Q+ I +   E  E+            EF    H 
Sbjct: 40   GEVVVGKVIAVDKDYVLVDIGYKSEGQININEFKNEKGEVNVKIYDDVEVMIEFWDEEH- 98

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
                   VLS +K +K              DK  +   D   TF ++G + G  I+++  
Sbjct: 99   ----EKLVLSKDKAEK--------------DKIWETIKD---TFDNDGVVSGVIINRVK- 136

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQFVKCKVLEI 1330
              GG  V +G   +                L G  +    P+  +DE  GQ    KVL+ 
Sbjct: 137  --GGFSVDVGLQAF----------------LPG-SQADLRPIRNFDEMVGQTYDFKVLKY 177

Query: 1331 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1390
            +R      ++ LS R  L+   +T             K  E +E L+   +V+G VKN+T
Sbjct: 178  NRRRN---NIVLSRRVLLEETLAT-------------KRAELMETLADGQVVEGIVKNIT 221

Query: 1391 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-- 1448
              G F+ L   +D  + ++++S G V  P + F +G  V  +VLS +   K++ + +K  
Sbjct: 222  EYGVFVDLG-GIDGLLHITDISWGRVRHPSELFTVGDNVTLKVLSFDLDKKKISLGMKQL 280

Query: 1449 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            T D   ++  +        VG    G++  + +YG+F+ +E
Sbjct: 281  TPDPWESAAEK------YPVGVKTTGKVVSITNYGIFVELE 315



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 178/433 (41%), Gaps = 69/433 (15%)

Query: 1038 LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 1097
            ++L + +   ET ++KRA+   +   G +V+  +  I    + +  G G  G +HIT+++
Sbjct: 184  IVLSRRVLLEETLATKRAELMETLADGQVVEGIVKNITEYGVFVDLG-GIDGLLHITDIS 242

Query: 1098 DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1157
              +      LF+   +G  VT +++  S   D KK     +S+    LT     S     
Sbjct: 243  WGRVRHPSELFT---VGDNVTLKVL--SFDLDKKK-----ISLGMKQLTPDPWESAA--- 289

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
                 +G + TG V  + N    + +   ++  + + + ++   +++   +  +IG+ V 
Sbjct: 290  -EKYPVGVKTTGKVVSITNYGIFVELEEGVEGLIHVSEISW-TRKIRHPSKVVNIGEEVD 347

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE----GDIVGGRISKILSG 1273
              VL I    + + L ++  +             N    I E    G ++ GRI  I   
Sbjct: 348  AVVLDIQPGNRRISLGMKQVEP------------NPWEVISEKYPVGTVIEGRIKNITDF 395

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1333
              GL + I   + G VH +++           + +    P   Y +G  V+  VLEI + 
Sbjct: 396  --GLFIGIDDDIDGLVHISDIS----------WTKRIKHPSEIYKKGDLVRAVVLEIDKA 443

Query: 1334 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVTSK 1392
                     + R S+ G+    S              E + D  P    V G V NVT  
Sbjct: 444  ---------NERFSM-GIKQLESD-----------PWESVRDRYPIGTKVSGVVTNVTDF 482

Query: 1393 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK---T 1449
            G F+ L   ++  V +S +S   +++P  ++ +G  +  RV++V    +++ +++K    
Sbjct: 483  GIFVELEEGIEGLVHVSEVSTERIKTPVGQYEVGAELTARVMNVNADERKIGLSIKRLDV 542

Query: 1450 SDSRTASQSEINN 1462
             D +T  +  ++N
Sbjct: 543  EDDKTLLKDYVDN 555



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 13/112 (11%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1442
            G V ++T+ G F+ L   ++  + +S +S    +  P K   IG+ V   VL ++P ++R
Sbjct: 300  GKVVSITNYGIFVELEEGVEGLIHVSEISWTRKIRHPSKVVNIGEEVDAVVLDIQPGNRR 359

Query: 1443 VEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFITIEN 1490
            + + +K        Q E N    +     VG ++ G+IK +  +GLFI I++
Sbjct: 360  ISLGMK--------QVEPNPWEVISEKYPVGTVIEGRIKNITDFGLFIGIDD 403



 Score = 40.8 bits (94), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 5/110 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1439
            +++G +KN+T  G FI +   +D  V +S++S    ++ P + +  G LV   VL ++  
Sbjct: 384  VIEGRIKNITDFGLFIGIDDDIDGLVHISDISWTKRIKHPSEIYKKGDLVRAVVLEIDKA 443

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            ++R  + +K  +S               +G  V G +  V  +G+F+ +E
Sbjct: 444  NERFSMGIKQLESDPWESVR----DRYPIGTKVSGVVTNVTDFGIFVELE 489


>gi|148555371|ref|YP_001262953.1| 30S ribosomal protein S1 [Sphingomonas wittichii RW1]
 gi|148500561|gb|ABQ68815.1| SSU ribosomal protein S1P [Sphingomonas wittichii RW1]
          Length = 569

 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 171/413 (41%), Gaps = 55/413 (13%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
           A + + D  E  V ++E  + E    R R       + L     ++S  EG++F    VK
Sbjct: 69  ADLKVGDEVEVYVDRVENVHGEAMLSRDRARREAAWDKLEAEFSQSSRVEGVIFGR--VK 126

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EIVKPGKKFKVGAELVFRVLGV 556
            G  V       D  GA+   PG    + P+  ++   +I +P           F++L +
Sbjct: 127 GGFTV-------DLNGAVAFLPGSQVDIRPVRDVTPLMDIPQP-----------FQILKM 168

Query: 557 KSKR--ITVTHKKTLVKSKLAILSSYAEAT-DRLITHGWITKIEKHGCFVRFYNGVQGFA 613
             +R  I V+ +  L +++    S   ++  +  +  G +  I  +G FV    G+ G  
Sbjct: 169 DRRRGNIVVSRRAVLEETRAEQRSGLIQSLHEGQVIEGVVKNITDYGAFVDL-GGIDGLL 227

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--LGS 671
             ++L       P+ M ++G VVK +I+     ++RI+L      +   E    K  +G 
Sbjct: 228 HVTDLSYKRVGHPNEMINIGDVVKVQIIRINKDTQRISLGMKQLESDPWEGAAAKYPIGG 287

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ----- 726
             +G V  +T     V +          P      H+   +  K  + PG          
Sbjct: 288 KFTGRVTNITEYGAFVELE---------PGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVE 338

Query: 727 --LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFL 782
             +L +D +   + L  K ++ N     P +A +  HP  SVV G V N  E G FV   
Sbjct: 339 VVILEVDADKRRISLGLKQAITN-----PWEAFAEAHPVGSVVEGEVKNATEFGLFVGLD 393

Query: 783 GRLTGFAPRSK---AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             + G    S     V G+ A LS  ++ G++V++ +LD++SE  RI+L +KQ
Sbjct: 394 NDVDGMVHMSDIAWGVTGEEA-LS-LHHKGETVKAIVLDIDSEKERISLGIKQ 444



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 185/465 (39%), Gaps = 74/465 (15%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGV 556
           G VVKG V A+++  A++    G+K+   +  + EF    PG+K   KVG E+   V  V
Sbjct: 29  GRVVKGTVTAIENDMAVIDV--GLKSEGRVA-LREFAPA-PGQKADLKVGDEVEVYVDRV 84

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           ++        +   + + A     AE +      G I    K G F    NG   F P S
Sbjct: 85  ENVHGEAMLSRDRARREAAWDKLEAEFSQSSRVEGVIFGRVK-GGFTVDLNGAVAFLPGS 143

Query: 617 ELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
           ++ + P  + + +  + Q  +     R   +I  SRR  L       R      +  G +
Sbjct: 144 QVDIRPVRDVTPLMDIPQPFQILKMDRRRGNIVVSRRAVLEETRAEQRSGLIQSLHEGQV 203

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVIKPGYEFDQLL 728
           + GVV  +T     V +   G   G +    L+     H      +  V+K      Q++
Sbjct: 204 IEGVVKNITDYGAFVDL---GGIDGLLHVTDLSYKRVGHPNEMINIGDVVKV-----QII 255

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHP-NSVVHGYVCNIIETGCFVRFLG 783
            ++ ++  + L  K        QL SD    A+  +P      G V NI E G FV    
Sbjct: 256 RINKDTQRISLGMK--------QLESDPWEGAAAKYPIGGKFTGRVTNITEYGAFVELEP 307

Query: 784 RLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
            + G    S+ +   +     K     Q V   IL+V+++  RI+L LKQ+  +  +A F
Sbjct: 308 GIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVVILEVDADKRRISLGLKQAITNPWEA-F 366

Query: 843 MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 902
            + H                           +GSV+EG+V  + +FG+ V  +  +DV G
Sbjct: 367 AEAH--------------------------PVGSVVEGEVKNATEFGLFVGLD--NDVDG 398

Query: 903 FITHHQLA-GATVES-------GSVIQAAILDVAKAERLVDLSLK 939
            +    +A G T E        G  ++A +LD+   +  + L +K
Sbjct: 399 MVHMSDIAWGVTGEEALSLHHKGETVKAIVLDIDSEKERISLGIK 443



 Score = 43.5 bits (101), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 126/326 (38%), Gaps = 28/326 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V++G V  +  +GA V   GG+  L  +  +S   +  P +   +G  +  +++ +  
Sbjct: 201 GQVIEGVVKNITDYGAFVDL-GGIDGLLHVTDLSYKRVGHPNEMINIGDVVKVQIIRINK 259

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            ++RI++  K+          + Y          G +T I ++G FV    G++G    S
Sbjct: 260 DTQRISLGMKQLESDPWEGAAAKYPIGGK---FTGRVTNITEYGAFVELEPGIEGLVHVS 316

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLGSLV 673
           E+        P  +    Q V+  I+      RRI+L      T   E   +   +GS+V
Sbjct: 317 EMSWTKKNVHPGKIVSTSQEVEVVILEVDADKRRISLGLKQAITNPWEAFAEAHPVGSVV 376

Query: 674 SGVVDVVTP--------NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
            G V   T         N V   V     + G    E L+ H +  TV K+++       
Sbjct: 377 EGEVKNATEFGLFVGLDNDVDGMVHMSDIAWGVTGEEALSLHHKGETV-KAIV------- 428

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR- 784
             L +D+E   + L  K           +D S ++ N+VV   V  I + G  V+     
Sbjct: 429 --LDIDSEKERISLGIKQLERGGVGAATADGSKLNKNAVVTVTVLAITDGGLEVQAGDDG 486

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQ 810
             GF  RS     +     + + VGQ
Sbjct: 487 AAGFIKRSDLGRDRDEQRPERFQVGQ 512



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            I+ L    +++G VKN+T  G F+ L   +D  + +++LS   V  P +   IG +V  +
Sbjct: 195  IQSLHEGQVIEGVVKNITDYGAFVDLG-GIDGLLHVTDLSYKRVGHPNEMINIGDVVKVQ 253

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            ++ +   ++R+ + +K  +S     +     +   +G    G++  +  YG F+ +E
Sbjct: 254  IIRINKDTQRISLGMKQLESDPWEGA----AAKYPIGGKFTGRVTNITEYGAFVELE 306


>gi|268679253|ref|YP_003303684.1| RNA binding S1 domain-containing protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617284|gb|ACZ11649.1| RNA binding S1 domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 558

 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 115/517 (22%), Positives = 197/517 (38%), Gaps = 82/517 (15%)

Query: 458 KEGSCVRVRILGFR-------HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
           K G  + V I GFR       H + L    +KA   E   F   D     V+  K+   +
Sbjct: 78  KVGDVIPVVITGFRNERPAVSHKKALRKDRIKAFIAE---FKEED---DAVLDVKITGKN 131

Query: 511 SFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGVKSKRITVTHKKTL 569
             G I +   G++   P    +  ++    GK  KV    V ++ G  ++ I V+ KK L
Sbjct: 132 KGGFIAENKEGIEFFLPRSQAAVKDMNSLMGKTLKVK---VIKIDG-DTESIIVSRKKYL 187

Query: 570 VKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
              +        E  DR  +  G I KI  +G FV    G+ G    SE+       P +
Sbjct: 188 DDDRKKRKEIVQELIDRDEVVEGTIKKITTYGMFVDV-GGIDGLVHYSEISYKGPVNPGT 246

Query: 629 MYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 685
           +Y  G+V+  + +      R ++LS    M  P    +D+L + G  +   +  + P   
Sbjct: 247 LYKEGEVIPVKAIKYDKDKRHLSLSVKAAMPDPWDEIKDEL-ETGDSIQVTISNIEPYGA 305

Query: 686 VV----------YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS 735
            V          ++    + K     +H  D++E   V+           +++ +D +  
Sbjct: 306 FVDLGNDIEGFLHISEISWDKNI---KHPRDYIEEGQVVDV---------EVIEIDAKER 353

Query: 736 NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
            L +S K  L   A+             VV G +  I   G FVR +G + G      A 
Sbjct: 354 RLRVSLKNVL---AKPFDEFTKKYKVGDVVKGEITTITAFGAFVR-IGGIEGLLHNEDAS 409

Query: 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
             +     + + VG  V   I+ ++ E  +++LS K+               L +  I  
Sbjct: 410 WDRNNKCKELFKVGDEVEVKIVKIDEEAEKVSLSKKE---------------LEDSPIQK 454

Query: 856 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH---QLAGA 912
              S  NG             ++ GK+ +  +FG+ V  EE+ D    I      Q+  A
Sbjct: 455 YAKSHENGD------------IVHGKIRDIKEFGIFVELEENVD--ALIRKEDLGQVNEA 500

Query: 913 TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
            ++ G  I+AAI  +   +  + LS++ +   + REA
Sbjct: 501 DLKVGDEIEAAITFIDDKKNRIRLSVRRLSKMKEREA 537


>gi|406938148|gb|EKD71434.1| hypothetical protein ACD_46C00183G0001 [uncultured bacterium]
          Length = 412

 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 146/351 (41%), Gaps = 33/351 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++  G  VKG V  +  +GA +   GGV  L  +  MS   I  P +   +G EL  ++L
Sbjct: 21  NINEGDEVKGVVKNLTDYGAFIDL-GGVDGLLHITDMSWKRIKHPNEILSIGDELKVKIL 79

Query: 555 GVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
            +    + V+   K L       +S       R+   G +T I  +GCFV    G++G  
Sbjct: 80  KIDRDNVRVSLGLKQLGGDPWLDISQRYPVNSRIT--GRVTNITDYGCFVEIEEGIEGLV 137

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKL 669
             SE+   +    P+ + H+GQ V+  ++      RRI+L        P     ++  K 
Sbjct: 138 HVSEMDWTNKNVNPNKVIHLGQEVEVLVLDVDAERRRISLGVKQCTANPWAAFAENHQK- 196

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-- 727
              V G +  +T     +++   G   G I   +L+D     T  +  ++   + D+L  
Sbjct: 197 SEQVKGKIKSITDFG--IFLELDGGIDGLI---YLSDIAWSETEAQDTLRKYQKGDELEA 251

Query: 728 --LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVR 780
             L +D E   + L  K        QL  D  A+++  N   +VV G V  + +    + 
Sbjct: 252 IILAIDVERERIALGLK--------QLAEDPLANYLTENEKGTVVTGKVVEVDQKYAIIE 303

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNILDVNSETGRITLSL 830
               + G   RS  +  ++ D  +T   VG +V + ++  + +   ITLS+
Sbjct: 304 LAEGIRGVL-RSSEISAEKVDDVRTKMQVGDTVEAKVMGTDRKIHAITLSI 353



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 146/356 (41%), Gaps = 42/356 (11%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK-PGLLLQGVVR 285
           LE + EG  +   VK++ D+G  +  G     G L   ++ + S   +K P  +L     
Sbjct: 19  LENINEGDEVKGVVKNLTDYGAFIDLG--GVDGLL---HITDMSWKRIKHPNEIL----- 68

Query: 286 SIDRTRKVVYLSSDPDTVSKCV-TKDLKG---ISIDLLVP-GMMVSTRVQSILENGVMLS 340
           SI    KV  L  D D V   +  K L G   + I    P    ++ RV +I + G  + 
Sbjct: 69  SIGDELKVKILKIDRDNVRVSLGLKQLGGDPWLDISQRYPVNSRITGRVTNITDYGCFVE 128

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-----TLNPYL 395
                 G V +  +  T    N     +  ++V   +L VD   R + L     T NP+ 
Sbjct: 129 IEEGIEGLVHVSEMDWTNKNVNPNKVIHLGQEVEVLVLDVDAERRRISLGVKQCTANPWA 188

Query: 396 L----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA--EEE 449
                H ++     K+  I D    + +D G+                + +SD+A  E E
Sbjct: 189 AFAENHQKSEQVKGKIKSITDFGIFLELDGGI-------------DGLIYLSDIAWSETE 235

Query: 450 VRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
            +   +KY++G  +   IL      E +A G LK  A + L    ++ + G VV GKV+ 
Sbjct: 236 AQDTLRKYQKGDELEAIILAIDVERERIALG-LKQLAEDPLANYLTENEKGTVVTGKVVE 294

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           VD   AI++   G++ +     +S  ++     K +VG  +  +V+G   K   +T
Sbjct: 295 VDQKYAIIELAEGIRGVLRSSEISAEKVDDVRTKMQVGDTVEAKVMGTDRKIHAIT 350



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 40/201 (19%)

Query: 755 DASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA-VDGQRADLSKTYYVGQSV 812
           D S  +P NS + G V NI + GCFV     + G    S+     +  + +K  ++GQ V
Sbjct: 102 DISQRYPVNSRITGRVTNITDYGCFVEIEEGIEGLVHVSEMDWTNKNVNPNKVIHLGQEV 161

Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
              +LDV++E  RI+L +KQ C ++  A+F + H          Q S+            
Sbjct: 162 EVLVLDVDAERRRISLGVKQ-CTANPWAAFAENH----------QKSEQ----------- 199

Query: 873 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES---------GSVIQAA 923
                ++GK+    DFG+ +  +   D  G I    +A +  E+         G  ++A 
Sbjct: 200 -----VKGKIKSITDFGIFLELDGGID--GLIYLSDIAWSETEAQDTLRKYQKGDELEAI 252

Query: 924 ILDVAKAERLVDLSLKTVFID 944
           IL +      + L LK +  D
Sbjct: 253 ILAIDVERERIALGLKQLAED 273


>gi|386751402|ref|YP_006224622.1| 30S ribosomal protein S1 [Helicobacter pylori Shi417]
 gi|384557660|gb|AFH98128.1| 30S ribosomal protein S1 [Helicobacter pylori Shi417]
          Length = 552

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 159/400 (39%), Gaps = 62/400 (15%)

Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           K +  +V++KK + + K+ A +    E  +  I  G I    K G  V    GV+ F  R
Sbjct: 86  KGEHPSVSYKKAISQQKIQAKIEELGENYENAIVEGKIVGKNKGGYIVE-SQGVEYFLSR 144

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
           S   L      +   H+G+ +K  I+     +  IN+S    F +   R  E   +L++ 
Sbjct: 145 SRSSL-----KNDANHIGKRIKACIVHVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 199

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
              V GVV  +TP  + V V      KG     H ++      V  +   K G E + + 
Sbjct: 200 TEPVLGVVRQITPFGIFVEV------KGVEGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 253

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  D E   L LS K ++ +  +++      + P   +   V NI   G FV     + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIENYGAFVDIGNDIEG 310

Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           F   S+ + D   +  S    VGQ +   I+D++ +  R+ +SLKQ      D       
Sbjct: 311 FLHVSEISWDKNVSHPSNYLNVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVF----- 365

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                       SKH            +G V+EGKV    DFG  ++      V G + +
Sbjct: 366 -----------ESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 400

Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H       +      + G VI+  IL + K +R + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDRKISLSAK 440



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 131/301 (43%), Gaps = 17/301 (5%)

Query: 361 TNWKNDYNQ-HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK---- 415
           ++ KND N   K++ A I+ VD  + ++ ++   +   N      V   ++ + ++    
Sbjct: 147 SSLKNDANHIGKRIKACIVHVDKENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLG 205

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           VVR     G+ +++          V  S+++ +     EK YKEG  V V+ + +   + 
Sbjct: 206 VVRQITPFGIFVEVKGVE----GLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKR 261

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EF 534
             +  +KA+  +        +KPG  +K  V  ++++GA V     ++    +  +S + 
Sbjct: 262 RLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDK 321

Query: 535 EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
            +  P     VG E+  +++ +  K++R+ V+ K+ L      +  S  +  D L   G 
Sbjct: 322 NVSHPSNYLNVGQEIDVKIIDIDPKNRRLRVSLKQ-LTNRPFDVFESKHQVGDVL--EGK 378

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +  +   G F+    GV G     +   D   +    Y +G V+K +I+      R+I+L
Sbjct: 379 VATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDRKISL 437

Query: 653 S 653
           S
Sbjct: 438 S 438



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 124/288 (43%), Gaps = 61/288 (21%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            HIGK +   ++ ++KE   + +  + F +    + +++S + ++                
Sbjct: 155  HIGKRIKACIVHVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 199

Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
               V G+V QI P         + G VH++E+ +           +G  +P   Y EG  
Sbjct: 200  TEPVLGVVRQITPFGIFVEVKGVEGLVHYSEISH-----------KGPVNPEKYYKEGDE 248

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1381
            V  K +      R    + LS++++               ++ P    E+I+D L P   
Sbjct: 249  VYVKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 287

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++  V N+ + G F+ +   ++  + +S +S D  V  P     +G+ +  +++ ++P +
Sbjct: 288  IKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDKNVSHPSNYLNVGQEIDVKIIDIDPKN 347

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ V+LK   +R     E    S   VGD++ G++  +  +G F+ +
Sbjct: 348  RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNL 391


>gi|417941256|ref|ZP_12584543.1| 30S ribosomal protein S1 [Streptococcus oralis SK313]
 gi|343388549|gb|EGV01135.1| 30S ribosomal protein S1 [Streptococcus oralis SK313]
          Length = 400

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 155/365 (42%), Gaps = 39/365 (10%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        + VK
Sbjct: 4   FEDLLNSVSQVEPGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G+   V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  VGEVLDV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  GV+GF P S L  D     ++   VGQ    +I    P   R  LS    
Sbjct: 119 KGGLSVEF-EGVRGFIPASML--DTRFVRNTDRFVGQEFDAKIKEVDPKENRFILSRREV 175

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--- 714
               +     ++ S ++ V DVVT        +A+  S G        D L H T +   
Sbjct: 176 VEAATAAARAEVFSKLA-VGDVVTGK------VARITSFGAFIDLGGVDGLVHLTELSHE 228

Query: 715 -----KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
                KSV+  G E + ++L L+ E   + LS K +        P D     +    VV 
Sbjct: 229 RNVSPKSVVTVGEEIEVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAKGDVVE 283

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V  + + G FV  L  + G    S+    +  +  +   VGQ V   +LDVN++  R+
Sbjct: 284 GTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADAERV 343

Query: 827 TLSLK 831
           +LS+K
Sbjct: 344 SLSIK 348



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIEVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAKG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +V+G VK +T  G F+ +   +D  V +S +S   +E+P++   +G+ V  +VL V   
Sbjct: 280  DVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
            ++RV +++K  + R A +
Sbjct: 340  AERVSLSIKALEERPAQE 357



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLNE 252

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R++++ K T       +    A+     +  G + ++   G FV    G+ G    S
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLAKGD---VVEGTVKRLTDFGAFVEVLPGIDGLVHVS 309

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           ++       P     VGQ V  +++     + R++LS      R ++++
Sbjct: 310 QISHKRIENPKEALTVGQEVTVKVLDVNADAERVSLSIKALEERPAQEE 358



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 147/373 (39%), Gaps = 64/373 (17%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            GV+G     EL  D   + +    VG+V+   ++  +       +++++   R+     
Sbjct: 39  TGVEGVLTLRELTNDRDADINDFVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARK- 97

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKP 720
                LV    +VVT        +  G S      +G IP    A  L+   V  +    
Sbjct: 98  -AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGVRGFIP----ASMLDTRFVRNTDRFV 150

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G EFD ++  +D + +  +LS +  +  +     ++  S +    VV G V  I   G F
Sbjct: 151 GQEFDAKIKEVDPKENRFILSRREVVEAATAAARAEVFSKLAVGDVVTGKVARITSFGAF 210

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    ++    +         VG+ +   +LD+N E GR++LSLK +     
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLNEEEGRVSLSLKATTPGPW 269

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +E+K+A                    G V+EG V    DFG  V  E   
Sbjct: 270 DG--------VEQKLAK-------------------GDVVEGTVKRLTDFGAFV--EVLP 300

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREAN 950
            + G +   Q++   +E+       G  +   +LDV A AER V LS+K         A 
Sbjct: 301 GIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADAER-VSLSIK---------AL 350

Query: 951 SNRQAQKKKRKRE 963
             R AQ++ +K E
Sbjct: 351 EERPAQEEGQKEE 363



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   +V G V  +TS G FI L   +D  V L+ LS     SP+    +G+ +  +VL 
Sbjct: 191  LAVGDVVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLD 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     RV ++LK +        E      L  GD+V G +KR+  +G F+ +
Sbjct: 250  LNEEEGRVSLSLKATTPGPWDGVE----QKLAKGDVVEGTVKRLTDFGAFVEV 298


>gi|119356256|ref|YP_910900.1| 30S ribosomal protein S1 [Chlorobium phaeobacteroides DSM 266]
 gi|119353605|gb|ABL64476.1| SSU ribosomal protein S1P [Chlorobium phaeobacteroides DSM 266]
          Length = 591

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 143/353 (40%), Gaps = 38/353 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K GMV++G V  +  FG  V   GG+  L  +  ++   I  P +   +   +   V
Sbjct: 211 ANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVV 269

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           +G    +KR+++  K+        I   Y   +      G I  I  +G FV    G++G
Sbjct: 270 VGFDENTKRVSLGMKQLEAHPWENIEIKYPVGSK---ARGRIVSITDYGAFVEIEKGIEG 326

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               SE+      + PS    + Q V+C I++      +++LS      RV+ED  + L 
Sbjct: 327 LVHISEMSWTQHIKHPSQFVSLNQEVECVILNIDKDHTKLSLSM----KRVNEDPWIALS 382

Query: 670 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIK 719
                 SL  G V  +T   V V +       G     H++D      + H +    ++K
Sbjct: 383 EKYIEASLHKGTVSNITDFGVFVEL-----EPGVDGLVHISDLSWTKKIRHPS---ELVK 434

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETG 776
              E D ++L  D  +  + L  K   IN     P D         +     +  IIE G
Sbjct: 435 KNQELDVKVLKFDVNARRIALGHKQ--INPD---PWDDFEQKYAVGAETPARISQIIEKG 489

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             V   G + GF P S  + G   D+  ++ +G  +   +++ + E  RI LS
Sbjct: 490 VIVILPGDVDGFVPVSHLLQGGVKDIHSSFALGDELPLRVIEFDKENKRIILS 542



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 5/119 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E + ++   M+++G VKN+T  G F+ L   LD  V +++++ G +  P +   + + + 
Sbjct: 208  EMLANIKVGMVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVDLDQPIK 266

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              V+  +  +KRV + +K  ++      EI       VG    G+I  +  YG F+ IE
Sbjct: 267  VVVVGFDENTKRVSLGMKQLEAHPWENIEI----KYPVGSKARGRIVSITDYGAFVEIE 321


>gi|406947536|gb|EKD78447.1| RNA binding S1 protein [uncultured bacterium]
          Length = 388

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           K G  + GKV  V  FGA V+F   ++ L  +  ++   I  P +  KVG ++  +++ +
Sbjct: 205 KVGDSIAGKVTGVVDFGAFVEFGDNLEGLVHISEIAWQRIDDPKEYLKVGDDVKAQIIAI 264

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            + +I+++ +  +    L + + Y       +  G + K+   G FV   + + G A  S
Sbjct: 265 DNGKISLSIRNLIADPWLEVAARYKIGE---VVRGKVLKLNPFGAFVELDSDIHGLAHIS 321

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL       PS +  +G V   +I+S  P   R+ LS+
Sbjct: 322 ELSYRKLNAPSEILKIGDVYDFKIISIEPGKHRLGLSY 359



 Score = 40.4 bits (93), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 951  SNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF 1010
            S RQA  KK   +     G ++ V+A +    +  L++ +    H  G+  VS  + + +
Sbjct: 92   SFRQAGHKKAWEKLEHLQGANEIVDAQIMDANKGGLIVRV---GHVSGFLPVSQLSVEHY 148

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA-----ISETETSSSKRAKKKSSYDVGS 1065
            P+ +  N   ++  +    +     +++ + +      +SE    + ++ +K + Y VG 
Sbjct: 149  PRVEGGNKAKILERLQTYVTQHFRVKVIDVDEVDEKLIVSEKMAKAEQQQEKIAQYKVGD 208

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
             +  ++T +      ++FG    G +HI+E+   +   +++     K+G  V A+IIA  
Sbjct: 209  SIAGKVTGVVDFGAFVEFGDNLEGLVHISEIAWQR---IDDPKEYLKVGDDVKAQIIAID 265

Query: 1126 N 1126
            N
Sbjct: 266  N 266


>gi|387908312|ref|YP_006338646.1| 30S ribosomal protein S1 [Helicobacter pylori XZ274]
 gi|387573247|gb|AFJ81955.1| 30S ribosomal protein S1 [Helicobacter pylori XZ274]
          Length = 556

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 161/400 (40%), Gaps = 62/400 (15%)

Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           K +  +V++KK + + K+ A +    E  +  I  G I    K G  V    GV+ F  R
Sbjct: 90  KGEHPSVSYKKAIFQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 148

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
           S   L      +   H+G+ +K  I+     +  IN+S    F +   R  E   +L++ 
Sbjct: 149 SHSSL-----KNDTNHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 203

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
              V GVV  +TP  + V V      KG     H ++      V  +   K G E + + 
Sbjct: 204 TEPVLGVVCQITPFGIFVEV------KGVEGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 257

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  D E   L LS K ++ +  +++      + P   +   V NI   G FV     + G
Sbjct: 258 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIENYGAFVDIGNDIEG 314

Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           F   S+ + D   +  SK   VGQ +   I+D++ +  R+ +SLKQ      D       
Sbjct: 315 FLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD------- 367

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                    +  SKH            +G V+EGKV    DFG  ++      V G + +
Sbjct: 368 ---------VFESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 404

Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H       +      + G VI+  IL + K ++ + LS K
Sbjct: 405 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 444



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 125/288 (43%), Gaps = 61/288 (21%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            HIGK +   ++ ++KE   + +  + F +    + +++S + ++                
Sbjct: 159  HIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 203

Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
               V G+V QI P         + G VH++E+ +           +G  +P   Y EG  
Sbjct: 204  TEPVLGVVCQITPFGIFVEVKGVEGLVHYSEISH-----------KGPVNPEKYYKEGDE 252

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1381
            V  K +      R    + LS++++               ++ P    E+I+D L P   
Sbjct: 253  VYVKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 291

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++  V N+ + G F+ +   ++  + +S +S D  V  P K   +G+ +  +++ ++P +
Sbjct: 292  IKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKN 351

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ V+LK   +R     E    S   VGD++ G++  +  +G F+ +
Sbjct: 352  RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNL 395



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 7/203 (3%)

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
           EK YKEG  V V+ + +   +   +  +KA+  +        +KPG  +K  V  ++++G
Sbjct: 244 EKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIENYG 303

Query: 514 AIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570
           A V     ++    +  +S +  +  P K   VG E+  +++ +  K++R+ V+ K+ L 
Sbjct: 304 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LT 362

Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
                +  S  +  D L   G +  +   G F+    GV G     +   D   +    Y
Sbjct: 363 NRPFDVFESKHQVGDVL--EGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHY 419

Query: 631 HVGQVVKCRIMSSIPASRRINLS 653
            +G V+K +I+      ++I+LS
Sbjct: 420 KIGDVIKVKILKINKKDKKISLS 442


>gi|308183158|ref|YP_003927285.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4]
 gi|308065343|gb|ADO07235.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4]
          Length = 552

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 159/400 (39%), Gaps = 62/400 (15%)

Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           K +  +V++KK + + K+ A +    E  +  I  G I    K G  V    GV+ F  R
Sbjct: 86  KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
           S   L      +   H+G+ +K  I+     +  IN+S    F +   R  E   +L++ 
Sbjct: 145 SRSSL-----KNDANHIGKRIKACIIHVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 199

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
              V GVV  +TP  + V V      KG     H ++      V  +   K G E + + 
Sbjct: 200 TEPVLGVVRQITPFGIFVEV------KGVEGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 253

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  D E   L LS K ++ +  +++      + P   +   V NI   G FV     + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIENYGAFVDIGNDIEG 310

Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           F   S+ + D   +  S    VGQ +   I+D++ +  R+ +SLKQ      D       
Sbjct: 311 FLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVF----- 365

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                       SKH            +G V+EGKV    DFG  ++      V G + +
Sbjct: 366 -----------ESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 400

Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H       +      + G VI+  IL + K +R + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDRKISLSAK 440



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 131/301 (43%), Gaps = 17/301 (5%)

Query: 361 TNWKNDYNQ-HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK---- 415
           ++ KND N   K++ A I+ VD  + ++ ++   +   N      V   ++ + ++    
Sbjct: 147 SSLKNDANHIGKRIKACIIHVDKENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLG 205

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           VVR     G+ +++          V  S+++ +     EK YKEG  V V+ + +   + 
Sbjct: 206 VVRQITPFGIFVEVKGVE----GLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKR 261

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EF 534
             +  +KA+  +        +KPG  +K  V  ++++GA V     ++    +  +S + 
Sbjct: 262 RLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDK 321

Query: 535 EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
            +  P     VG E+  +++ +  K++R+ V+ K+ L      +  S  +  D L   G 
Sbjct: 322 NVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LTNRPFDVFESKHQVGDVL--EGK 378

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +  +   G F+    GV G     +   D   +    Y +G V+K +I+      R+I+L
Sbjct: 379 VATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDRKISL 437

Query: 653 S 653
           S
Sbjct: 438 S 438



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 124/288 (43%), Gaps = 61/288 (21%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            HIGK +   ++ ++KE   + +  + F +    + +++S + ++                
Sbjct: 155  HIGKRIKACIIHVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 199

Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
               V G+V QI P         + G VH++E+ +           +G  +P   Y EG  
Sbjct: 200  TEPVLGVVRQITPFGIFVEVKGVEGLVHYSEISH-----------KGPVNPEKYYKEGDE 248

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1381
            V  K +      R    + LS++++               ++ P    E+I+D L P   
Sbjct: 249  VYVKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 287

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++  V N+ + G F+ +   ++  + +S +S D  V  P     +G+ +  +++ ++P +
Sbjct: 288  IKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKN 347

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ V+LK   +R     E    S   VGD++ G++  +  +G F+ +
Sbjct: 348  RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNL 391


>gi|94676844|ref|YP_588705.1| 30S ribosomal protein S1 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219994|gb|ABF14153.1| ribosomal protein S1 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 558

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 149/353 (42%), Gaps = 35/353 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA V   GGV  L  +  M+   +  P +   +G E++ ++L
Sbjct: 188 NMQEGMEVKGLVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVTIGDEIIVKIL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+       AI   Y E + RL   G +T +  +GCFV    GV+G 
Sbjct: 247 KFDRERTRVSLGLKQLSQDPWYAIAQRYPENS-RLT--GRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVK 668
              SE+   +    PS + +V  +V+  ++      RRI+L        P +   +   K
Sbjct: 304 VHVSEMDWTNKNVHPSKVVNVNDIVEIMVLDIDEERRRISLGLKQCQANPWQKFAETHEK 363

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  V G +  +T   + +     G   G     HL+D   + +  ++    K G E   
Sbjct: 364 -GDRVEGKIKSITDFGIFI-----GLEGGIDGLVHLSDIYWNLSGEEAAREYKKGEEIAA 417

Query: 727 -LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHI----HPNSVVHGYVCNIIETGCFVR 780
            +L +D E   + L  K        QL  D  SH        ++V G +  + + G  ++
Sbjct: 418 VVLQVDAERERISLGIK--------QLDQDPLSHYLSLNKKGAIVSGKIIAVDDKGALIQ 469

Query: 781 FLGRLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G+  R+   D    R D +    +G ++ + ++ V+ +   I LS++
Sbjct: 470 LASGVEGYL-RTFDTDSVESRRDSAMLLNIGDNIEATLIGVDRKNRFINLSIR 521



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 107/473 (22%), Positives = 195/473 (41%), Gaps = 83/473 (17%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           +PG +V+G ++++     IV    G+K+   +P +++F   +   + KV  ++   +  V
Sbjct: 19  RPGSIVRGTIVSIAK--DIVLVDAGLKSESAIP-IAQFYNAQGELEIKVNDQVDVALDAV 75

Query: 557 KS---KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           +    + I    K    ++ L +  +Y EA    I  G I    K G  V   NG++ F 
Sbjct: 76  EDGFGETILSRDKAKRHEAWLMLEQAYEEAA---IVTGIINSKVKGGFTVEL-NGIRAFL 131

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL- 666
           P S + + P  +  +++  G+ ++ +++      +++  SRR   + +        D+L 
Sbjct: 132 PGSLVDMRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRR---AVIESENSFERDNLL 186

Query: 667 --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E
Sbjct: 187 ENMQEGMEVKGLVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVTIGDE 240

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGC 777
              ++L  D E + + L  K        QL  D     A     NS + G V N+ + GC
Sbjct: 241 IIVKILKFDRERTRVSLGLK--------QLSQDPWYAIAQRYPENSRLTGRVTNLTDYGC 292

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           FV     + G    S+ +D    ++  SK   V   V   +LD++ E  RI+L LKQ C 
Sbjct: 293 FVEIEEGVEGLVHVSE-MDWTNKNVHPSKVVNVNDIVEIMVLDIDEERRRISLGLKQ-CQ 350

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
           ++    F + H    EK                      G  +EGK+    DFG+ +  E
Sbjct: 351 ANPWQKFAETH----EK----------------------GDRVEGKIKSITDFGIFIGLE 384

Query: 896 -------EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
                    SD+Y  ++  + A    + G  I A +L V      + L +K +
Sbjct: 385 GGIDGLVHLSDIYWNLSGEE-AAREYKKGEEIAAVVLQVDAERERISLGIKQL 436


>gi|385230337|ref|YP_005790253.1| 30S ribosomal protein S1 [Helicobacter pylori Puno135]
 gi|344336775|gb|AEN18736.1| 30S ribosomal protein S1 [Helicobacter pylori Puno135]
          Length = 552

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 159/400 (39%), Gaps = 62/400 (15%)

Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           K +  +V++KK + + K+ A +    E  +  I  G I    K G  V    GV+ F  R
Sbjct: 86  KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
           S   L      +   H+G+ +K  I+     +  IN+S    F +   R  E   +L++ 
Sbjct: 145 SRSSL-----KNDANHIGKRIKACIIHVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 199

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
              V GVV  +TP  + V V      KG     H ++      V  +   K G E + + 
Sbjct: 200 TEPVLGVVRQITPFGIFVEV------KGVEGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 253

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  D E   L LS K ++ +  +++      + P   +   V NI   G FV     + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIENYGAFVDIGNDIEG 310

Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           F   S+ + D   +  S    VGQ +   I+D++ +  R+ +SLKQ      D       
Sbjct: 311 FLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVF----- 365

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                       SKH            +G V+EGKV    DFG  ++      V G + +
Sbjct: 366 -----------ESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 400

Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H       +      + G VI+  IL + K +R + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDRKISLSAK 440



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 131/301 (43%), Gaps = 17/301 (5%)

Query: 361 TNWKNDYNQ-HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK---- 415
           ++ KND N   K++ A I+ VD  + ++ ++   +   N      V   ++ + ++    
Sbjct: 147 SSLKNDANHIGKRIKACIIHVDKENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLG 205

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           VVR     G+ +++          V  S+++ +     EK YKEG  V V+ + +   + 
Sbjct: 206 VVRQITPFGIFVEVKGVE----GLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKR 261

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EF 534
             +  +KA+  +        +KPG  +K  V  ++++GA V     ++    +  +S + 
Sbjct: 262 RLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDK 321

Query: 535 EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
            +  P     VG E+  +++ +  K++R+ V+ K+ L      +  S  +  D L   G 
Sbjct: 322 NVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LTNRPFDVFESKHQVGDVL--EGK 378

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +  +   G F+    GV G     +   D   +    Y +G V+K +I+      R+I+L
Sbjct: 379 VATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDRKISL 437

Query: 653 S 653
           S
Sbjct: 438 S 438



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 124/288 (43%), Gaps = 61/288 (21%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            HIGK +   ++ ++KE   + +  + F +    + +++S + ++                
Sbjct: 155  HIGKRIKACIIHVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 199

Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
               V G+V QI P         + G VH++E+ +           +G  +P   Y EG  
Sbjct: 200  TEPVLGVVRQITPFGIFVEVKGVEGLVHYSEISH-----------KGPVNPEKYYKEGDE 248

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1381
            V  K +      R    + LS++++               ++ P    E+I+D L P   
Sbjct: 249  VYVKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 287

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++  V N+ + G F+ +   ++  + +S +S D  V  P     +G+ +  +++ ++P +
Sbjct: 288  IKVVVSNIENYGAFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKN 347

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ V+LK   +R     E    S   VGD++ G++  +  +G F+ +
Sbjct: 348  RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNL 391


>gi|417917651|ref|ZP_12561210.1| 30S ribosomal protein S1 [Streptococcus parasanguinis SK236]
 gi|342830288|gb|EGU64627.1| 30S ribosomal protein S1 [Streptococcus parasanguinis SK236]
          Length = 399

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 156/365 (42%), Gaps = 39/365 (10%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        ++VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDANQANVAISGTGVEGVLTLRELTNDRDADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  G++GF P S L  D     ++   VGQ    +I    P   R    F++ 
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFDAKIKEVDPKENR----FILS 171

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--- 714
              V E +     + V G ++V     VV   +A+  S G        D L H T +   
Sbjct: 172 RREVVEAESAAARAEVFGKLNV---GDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHE 228

Query: 715 -----KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
                KSV+  G E   ++L L+ E   + LS K +        P D     +    V+ 
Sbjct: 229 RNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVIE 283

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V  + + G FV  L  + G    S+    +  +      VGQ V   +L+VN+   R+
Sbjct: 284 GTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERV 343

Query: 827 TLSLK 831
           +LS+K
Sbjct: 344 SLSIK 348



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++++
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERPAQEE 358



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAA 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
             +RV +++K  + R A +
Sbjct: 340  DERVSLSIKALEERPAQE 357



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 42/251 (16%)

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G EFD ++  +D + +  +LS +  +   +    ++    ++   VV G V  I   G F
Sbjct: 151 GQEFDAKIKEVDPKENRFILSRREVVEAESAAARAEVFGKLNVGDVVTGKVARITSFGAF 210

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    ++    +         VG+ ++  +LD+N E GR++LSLK +     
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTPGPW 269

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +E+K+A                    G VIEG V    DFG  V  E   
Sbjct: 270 DG--------VEQKLAA-------------------GDVIEGTVKRLTDFGAFV--EVLP 300

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   Q++   VE+       G  +   +L+V  A+  V LS+K +     R A  
Sbjct: 301 GIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKAL---EERPAQE 357

Query: 952 NRQAQKKKRKR 962
             + Q+K++ R
Sbjct: 358 EGEKQEKRQSR 368



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V G V  +TS G FI L   +D  V L+ LS     SP+    +G+ +  +VL +    
Sbjct: 196  VVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEE 254

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 255  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|312867675|ref|ZP_07727881.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
 gi|311096738|gb|EFQ54976.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
          Length = 399

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 156/365 (42%), Gaps = 39/365 (10%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        ++VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDTNQANVAISGTGVEGVLTLRELTNDRDADINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  G++GF P S L  D     ++   VGQ    +I    P   R    F++ 
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFDAKIKEVDPKENR----FILS 171

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--- 714
              V E +     + V G ++V     VV   +A+  S G        D L H T +   
Sbjct: 172 RREVVEAESAAARAEVFGKLNV---GDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHE 228

Query: 715 -----KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
                KSV+  G E   ++L L+ E   + LS K +        P D     +    V+ 
Sbjct: 229 RNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVIE 283

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V  + + G FV  L  + G    S+    +  +      VGQ V   +L+VN+   R+
Sbjct: 284 GTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERV 343

Query: 827 TLSLK 831
           +LS+K
Sbjct: 344 SLSIK 348



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++++
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERPAQEE 358



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAA 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
             +RV +++K  + R A +
Sbjct: 340  DERVSLSIKALEERPAQE 357



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 42/251 (16%)

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G EFD ++  +D + +  +LS +  +   +    ++    ++   VV G V  I   G F
Sbjct: 151 GQEFDAKIKEVDPKENRFILSRREVVEAESAAARAEVFGKLNVGDVVTGKVARITSFGAF 210

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    ++    +         VG+ ++  +LD+N E GR++LSLK +     
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTPGPW 269

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +E+K+A                    G VIEG V    DFG  V  E   
Sbjct: 270 DG--------VEQKLAA-------------------GDVIEGTVKRLTDFGAFV--EVLP 300

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   Q++   VE+       G  +   +L+V  A+  V LS+K +     R A  
Sbjct: 301 GIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKAL---EERPAQE 357

Query: 952 NRQAQKKKRKR 962
             + Q+K++ R
Sbjct: 358 EGEKQEKRQSR 368



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V G V  +TS G FI L   +D  V L+ LS     SP+    +G+ +  +VL +    
Sbjct: 196  VVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEE 254

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 255  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|254490959|ref|ZP_05104141.1| ribosomal protein S1 [Methylophaga thiooxidans DMS010]
 gi|224463868|gb|EEF80135.1| ribosomal protein S1 [Methylophaga thiooxydans DMS010]
          Length = 530

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 143/346 (41%), Gaps = 24/346 (6%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VVKG V  +  +GA V   GG+  L  +  M+   +  P +   +G E+  +VL 
Sbjct: 189 LEEGKVVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSEVVAIGDEIEVQVLK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              + +R+++  K+        I   Y  +T R+  HG +T I  +GCFV   +GV+G  
Sbjct: 248 FDKERERVSLGLKQMGDDPWKDIARRYPNST-RI--HGKVTNIADYGCFVEIEDGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--KLG 670
             SE+   +    PS +  +G  V+  ++      RRI+L          E+  +    G
Sbjct: 305 HMSEMDWTNKNVHPSKLVSLGDEVEVMVLDIDAERRRISLGIKQCQANPWEEFAMTHNKG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQ-L 727
             VSG +  +T   + +     G   G     HL+D    E    +    K G + +  +
Sbjct: 365 DKVSGGIKSITDFGIFI-----GLDGGIDGLIHLSDISWEEDNEELIRDFKKGDDVEAVV 419

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDAS-HIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D E   + L      I   Q  P  A    HP  ++V+G V  +   G  +     +
Sbjct: 420 LAIDPERERISLG-----IKQLQDDPFSAYLSEHPRGTIVNGKVTAVDARGATIELAEGV 474

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +   +     +  D SK   +G  V +    ++ +   +TLS+K
Sbjct: 475 ESYVRVADIARERVEDASKVLAIGDDVEAKFTGMSRKDRTLTLSIK 520



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 151/366 (41%), Gaps = 37/366 (10%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-----EI-VKPGKKFKVGAEL 549
           ++PG +V G V+ V     +V    G+K+   +P +SEF     E+ V  G    V  E 
Sbjct: 18  MQPGKIVTGTVVNVGP--DVVMVNAGLKSEGAIP-VSEFLNESGEVSVSIGDLVDVSLES 74

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           +    G       ++  K         L    EA D +   G I+   K G  V   N +
Sbjct: 75  LEDGFGATQ----LSRDKAKAAEAWTKLEHAFEAGDTVT--GMISGKVKGGFTVDLEN-I 127

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDD 665
           + F P S + + P  + S +       K     R  ++I  SRR  +       R +  +
Sbjct: 128 RAFLPGSLVDVRPIRDTSHLEGKDLEFKLIKLDRPRNNIVVSRRAIMEEENSAEREALLE 187

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 724
            ++ G +V G+V  +T     V +   G   G +    +A   ++H +    V+  G E 
Sbjct: 188 TLEEGKVVKGIVKNLTDYGAFVDL---GGIDGLLHITDMAWKRVKHPS---EVVAIGDEI 241

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV-VHGYVCNIIETGCFVRFL 782
           + Q+L  D E   + L  K            D +  +PNS  +HG V NI + GCFV   
Sbjct: 242 EVQVLKFDKERERVSLGLK----QMGDDPWKDIARRYPNSTRIHGKVTNIADYGCFVEIE 297

Query: 783 GRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
             + G    S+ +D    ++  SK   +G  V   +LD+++E  RI+L +KQ C ++   
Sbjct: 298 DGVEGLVHMSE-MDWTNKNVHPSKLVSLGDEVEVMVLDIDAERRRISLGIKQ-CQANPWE 355

Query: 841 SFMQEH 846
            F   H
Sbjct: 356 EFAMTH 361



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 146/361 (40%), Gaps = 53/361 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LET++EG V+   VK++ D+G  +  G     G L   ++A    ++    V  G  ++ 
Sbjct: 186 LETLEEGKVVKGIVKNLTDYGAFVDLG--GIDGLLHITDMAWKRVKHPSEVVAIGDEIEV 243

Query: 283 VVRSIDRTRKVVYLS-----SDPDTVSKCVTKDLKGISIDLLVPG-MMVSTRVQSILENG 336
            V   D+ R+ V L       DP        KD     I    P    +  +V +I + G
Sbjct: 244 QVLKFDKERERVSLGLKQMGDDP-------WKD-----IARRYPNSTRIHGKVTNIADYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     +   +V   +L +D   R + L +     
Sbjct: 292 CFVEIEDGVEGLVHMSEMDWTNKNVHPSKLVSLGDEVEVMVLDIDAERRRISLGIKQCQA 351

Query: 392 NPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA- 446
           NP+    + HN+       +  I D    + +D G+  L             + +SD++ 
Sbjct: 352 NPWEEFAMTHNKGDKVSGGIKSITDFGIFIGLDGGIDGL-------------IHLSDISW 398

Query: 447 EEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVK 503
           EE+  +L + +K+G  V   +L      E ++ GI  L+   F   +  H     G +V 
Sbjct: 399 EEDNEELIRDFKKGDDVEAVVLAIDPERERISLGIKQLQDDPFSAYLSEHP---RGTIVN 455

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITV 563
           GKV AVD+ GA ++   GV++   +  ++   +    K   +G ++  +  G+  K  T+
Sbjct: 456 GKVTAVDARGATIELAEGVESYVRVADIARERVEDASKVLAIGDDVEAKFTGMSRKDRTL 515

Query: 564 T 564
           T
Sbjct: 516 T 516



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L    +V+G VKN+T  G F+ L   +D  + +++++   V+ P +   IG  +  +
Sbjct: 186  LETLEEGKVVKGIVKNLTDYGAFVDLG-GIDGLLHITDMAWKRVKHPSEVVAIGDEIEVQ 244

Query: 1433 VLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            VL  +   +RV + LK    D          N + +H      G++  +  YG F+ IE+
Sbjct: 245  VLKFDKERERVSLGLKQMGDDPWKDIARRYPNSTRIH------GKVTNIADYGCFVEIED 298


>gi|322389474|ref|ZP_08063026.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
 gi|321143852|gb|EFX39278.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
          Length = 399

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 156/365 (42%), Gaps = 39/365 (10%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+PG VV  +V+ VD+  A V   G GV+ +  L  ++        ++VK
Sbjct: 4   FEDLLNSVSQVEPGDVVTAEVLTVDANQANVAISGTGVEGVLTLRELTNDRDANINDLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
           PG+  ++   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  PGETLEL---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  G++GF P S L  D     ++   VGQ    +I    P   R    F++ 
Sbjct: 119 KGGLSVEF-EGLRGFIPASML--DTRFVRNTERFVGQEFDAKIKEVDPKENR----FILS 171

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--- 714
              V E +     + V G ++V     VV   +A+  S G        D L H T +   
Sbjct: 172 RREVVEAESAAARAEVFGKLNV---GDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHE 228

Query: 715 -----KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
                KSV+  G E   ++L L+ E   + LS K +        P D     +    V+ 
Sbjct: 229 RNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTPG-----PWDGVEQKLAAGDVIE 283

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V  + + G FV  L  + G    S+    +  +      VGQ V   +L+VN+   R+
Sbjct: 284 GTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERV 343

Query: 827 TLSLK 831
           +LS+K
Sbjct: 344 SLSIK 348



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  +VL +  
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNE 252

Query: 559 K--RITVTHKKTL------VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           +  R++++ K T       V+ KLA       A D  +  G + ++   G FV    G+ 
Sbjct: 253 EEGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEGTVKRLTDFGAFVEVLPGID 303

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           G    S++       P  +  VGQ V  +++    A  R++LS      R ++++
Sbjct: 304 GLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERPAQEE 358



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ KVL+++        V LSL+++                 TPG      + L+  
Sbjct: 240  GEEIQVKVLDLNEE---EGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAA 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
             +RV +++K  + R A +
Sbjct: 340  DERVSLSIKALEERPAQE 357



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 42/251 (16%)

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
           G EFD ++  +D + +  +LS +  +   +    ++    ++   VV G V  I   G F
Sbjct: 151 GQEFDAKIKEVDPKENRFILSRREVVEAESAAARAEVFGKLNVGDVVTGKVARITSFGAF 210

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    ++    +         VG+ ++  +LD+N E GR++LSLK +     
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTPGPW 269

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +E+K+A                    G VIEG V    DFG  V  E   
Sbjct: 270 DG--------VEQKLAA-------------------GDVIEGTVKRLTDFGAFV--EVLP 300

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   Q++   VE+       G  +   +L+V  A+  V LS+K +     R A  
Sbjct: 301 GIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKAL---EERPAQE 357

Query: 952 NRQAQKKKRKR 962
             + Q+K++ R
Sbjct: 358 EGEKQEKRQSR 368



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            +V G V  +TS G FI L   +D  V L+ LS     SP+    +G+ +  +VL +    
Sbjct: 196  VVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEE 254

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             RV ++LK +        E      L  GD++ G +KR+  +G F+ +
Sbjct: 255  GRVSLSLKATTPGPWDGVE----QKLAAGDVIEGTVKRLTDFGAFVEV 298


>gi|392972153|ref|ZP_10337545.1| 30S ribosomal protein S1 [Staphylococcus equorum subsp. equorum
           Mu2]
 gi|392509866|emb|CCI60847.1| 30S ribosomal protein S1 [Staphylococcus equorum subsp. equorum
           Mu2]
          Length = 393

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 22/250 (8%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D+      P++ +ST      SD  E +V KL+ +  + +  RV 
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDF-EGQVLKLKVEELDPANNRV- 168

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
           IL  + +E L     K      L         G V++GKV  + +FGA V   GGV  L 
Sbjct: 169 ILSRKAVEALENAEKKDDLLNSL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLV 220

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 584
            +  +S   +  P     +G  +  +V  V   S+RI+++ K TL     +I   + E  
Sbjct: 221 HVSELSHEHVKSPEDVVSIGDTVNVKVKSVDRDSERISLSIKDTLPSPFESIKGEFNEGD 280

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
              +  G + ++   G FV    GVQG    SE+       PS +   G+VV  +++   
Sbjct: 281 ---VIEGTVVRLTNFGAFVEIKPGVQGLVHISEIRHTHIGSPSEVLEPGEVVGVKVLGVD 337

Query: 645 PASRRINLSF 654
               RI+LS 
Sbjct: 338 VEKERISLSI 347



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++K G  V G++  +D    IV   G     + P+  +S   I  PG   KVG E+   V
Sbjct: 12  EIKEGDTVTGEIQEIDEKQVIVNINGAKFNGIIPISQLSTHHIDNPGDAVKVGDEIGAYV 71

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 609
             V+      T    L K +L    SY    ++L         +T++ K G  V    G 
Sbjct: 72  TKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNKTIEAKVTEVVKGGLVVDV--GQ 129

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-----D 664
           +GF P S +  D   E  S +  GQV+K ++    PA+ R+ LS   K     E     D
Sbjct: 130 RGFVPASLISTDF-IEDFSDFE-GQVLKLKVEELDPANNRVILS--RKAVEALENAEKKD 185

Query: 665 DLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
           DL+     G ++ G V  +T     V +   G   G +    L+   EH    + V+  G
Sbjct: 186 DLLNSLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVSIG 240

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
              + ++  +D +S  + LS K +L +  + +  +    +   V+ G V  +   G FV 
Sbjct: 241 DTVNVKVKSVDRDSERISLSIKDTLPSPFESIKGE---FNEGDVIEGTVVRLTNFGAFVE 297

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
               + G    S+         S+    G+ V   +L V+ E  RI+LS+K + 
Sbjct: 298 IKPGVQGLVHISEIRHTHIGSPSEVLEPGEVVGVKVLGVDVEKERISLSIKATL 351



 Score = 47.0 bits (110), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 159/397 (40%), Gaps = 76/397 (19%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           ++ ++EG  +T  ++ I++   I++     F G +P + L+    +N G  VK G  +  
Sbjct: 10  IKEIKEGDTVTGEIQEIDEKQVIVNINGAKFNGIIPISQLSTHHIDNPGDAVKVGDEIGA 69

Query: 283 VV------------------RSIDRTRKVVYLSSDPD---TVSKCVTKDLKG-ISIDL-- 318
            V                  R ++  +   +L    D   T+   VT+ +KG + +D+  
Sbjct: 70  YVTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNKTIEAKVTEVVKGGLVVDVGQ 129

Query: 319 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
              VP  ++ST           +   + F G V    ++   P  N             R
Sbjct: 130 RGFVPASLISTD---------FIEDFSDFEGQVLKLKVEELDPANN-------------R 167

Query: 377 ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
           ++       A+        L N      +  GD+  + KV R+    G  +DI       
Sbjct: 168 VILSRKAVEALENAEKKDDLLNS-----LNEGDVI-EGKVARL-TNFGAFVDIGGVD--- 217

Query: 437 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLVFTH 493
              V +S+++ E V+  E     G  V V++    R  E ++  I     S FE +    
Sbjct: 218 -GLVHVSELSHEHVKSPEDVVSIGDTVNVKVKSVDRDSERISLSIKDTLPSPFESI---K 273

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            +   G V++G V+ + +FGA V+   GV+ L  +  +    I  P +  + G  +  +V
Sbjct: 274 GEFNEGDVIEGTVVRLTNFGAFVEIKPGVQGLVHISEIRHTHIGSPSEVLEPGEVVGVKV 333

Query: 554 LG--VKSKRITVTHKKTL-----VKSKLAILSSYAEA 583
           LG  V+ +RI+++ K TL     V+S  A   SY E+
Sbjct: 334 LGVDVEKERISLSIKATLEAENVVESDSATTKSYLES 370



 Score = 45.1 bits (105), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    IG  V  +V S
Sbjct: 191  LNEGDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVKSPEDVVSIGDTVNVKVKS 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V+  S+R+ +++K  D+  +    I      + GD++ G + R+ ++G F+ I
Sbjct: 250  VDRDSERISLSIK--DTLPSPFESIK--GEFNEGDVIEGTVVRLTNFGAFVEI 298


>gi|395782239|ref|ZP_10462643.1| 30S ribosomal protein S1 [Bartonella rattimassiliensis 15908]
 gi|395419178|gb|EJF85479.1| 30S ribosomal protein S1 [Bartonella rattimassiliensis 15908]
          Length = 566

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 130/614 (21%), Positives = 236/614 (38%), Gaps = 96/614 (15%)

Query: 486  FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            FE L+   F  +D+  G VVKG+VIA++   AI+    G+K    +P + EF     G  
Sbjct: 11   FEALLTESFQTNDLNEGSVVKGRVIAIEKDMAIID--AGLKVEGRIP-LKEFGAKAKGGS 67

Query: 543  FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI---EKH 599
             +VG E+   +  +++       +  L + K     S+    ++  +   +  +   +  
Sbjct: 68   LQVGDEVEVYIERIEN----AMGEAVLSREKARREESWVRLEEKFNSGARVDGVIFSQVK 123

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFM 655
            G F    +G   F PRS++ + P  + + + H  Q  +     R   +I  SRR  L   
Sbjct: 124  GGFTVDLDGAVAFLPRSQVDIRPIRDVTPLMHNSQSFEILKMDRRRGNIVVSRRTVLEES 183

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHA 711
                R      ++   +V GVV  +T     V +   G   G +    +A    +H    
Sbjct: 184  RAEQRSEIVQNLEENQIVEGVVKNITDYGAFVDL---GGIDGLLHVTDMAWRRVNHPSEV 240

Query: 712  TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI----HP-NSVVH 766
              +   IK      Q++ ++ ++  + L  K        QL SD        +P    + 
Sbjct: 241  LTIGQTIKV-----QIIRINQDTHRISLGMK--------QLESDPWESICVRYPIGKKIT 287

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V NI + G FV     + G    S+ +   +     K     Q V   +L+++    R
Sbjct: 288  GAVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNVHPGKILSTSQEVEVVVLEIDPSKRR 347

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            I+L LKQ+  +  +A                           +   F + S IEG+V   
Sbjct: 348  ISLGLKQTFENPWEA---------------------------FANKFPVNSQIEGEVKNK 380

Query: 886  NDFGVVVSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLS 937
             +FG+ +  E   DV G +    L           T   G +++A +LDV   +  + L 
Sbjct: 381  TEFGLFIGLE--GDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDVDIEKERISLG 438

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN--H 995
            +K +  D+  EA              AS +L     V   V  V +N + + L ++N   
Sbjct: 439  IKQLSSDKVGEA-------------AASGELRKGAVVTCEVTAVNDNDIEVKLVDHNLAT 485

Query: 996  SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
            +I    ++    ++ P++ F  GQ V A + A    +    + +    I+E + + ++  
Sbjct: 486  TIRRVDLARDRDEQRPER-FAIGQKVDARITAFDKKTRKISVSIKALEIAEEKEAVAQYG 544

Query: 1056 KKKSSYDVGSLVQA 1069
               S   +G ++ A
Sbjct: 545  STDSGASLGDILGA 558



 Score = 43.9 bits (102), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 5/119 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L  N IV+G VKN+T  G F+ L   +D  + +++++   V  P +   IG+ + 
Sbjct: 190  EIVQNLEENQIVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEVLTIGQTIK 248

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +++ +   + R+ + +K  +S       +       +G  + G +  +  YG F+ IE
Sbjct: 249  VQIIRINQDTHRISLGMKQLESDPWESICV----RYPIGKKITGAVTNITDYGGFVEIE 303


>gi|303326814|ref|ZP_07357256.1| putative ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
 gi|302862802|gb|EFL85734.1| putative ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
          Length = 488

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 41/242 (16%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +   + EGD V GRI+++     G  +++ P + G +H +EL    V     G  +  
Sbjct: 192  DKLLETLKEGDTVEGRITRLAPF--GAFMELAPAVEGMIHLSELSWSRV-----GAADEA 244

Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
              P      G  V+ KVL IS+  +G   + LS R   +G            +D P    
Sbjct: 245  VSP------GDLVRVKVLGISKNDKGQIRISLS-RKQAEG---------DPWLDAP---- 284

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLV 1429
               E LS   +VQG V  +   G F+ L   ++  + +S +S    V  PE+    G+ V
Sbjct: 285  ---ERLSAGAVVQGKVVRLAPFGAFVELLPGVEGLIHVSEMSWAKRVNKPEEVLSAGETV 341

Query: 1430 AGRVLSVEPLSKRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1486
            + ++  V   ++R+ ++L+ ++    + A+Q          VG  V G ++    YGLF+
Sbjct: 342  SVKIKDVNTETRRIALSLRDAEGDPWQDAAQ-------RFAVGSTVTGTVESRTQYGLFV 394

Query: 1487 TI 1488
            T+
Sbjct: 395  TL 396



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 39/227 (17%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF---------EIVKPGKKFKVG 546
           +K G  V+G++  +  FGA ++    V+ +    H+SE          E V PG   +V 
Sbjct: 198 LKEGDTVEGRITRLAPFGAFMELAPAVEGMI---HLSELSWSRVGAADEAVSPGDLVRV- 253

Query: 547 AELVFRVLGVKSK-----RITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIE 597
                +VLG+        RI+++ K+       A    + +A +RL    +  G + ++ 
Sbjct: 254 -----KVLGISKNDKGQIRISLSRKQ-------AEGDPWLDAPERLSAGAVVQGKVVRLA 301

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
             G FV    GV+G    SE+       +P  +   G+ V  +I      +RRI LS   
Sbjct: 302 PFGAFVELLPGVEGLIHVSEMSWAKRVNKPEEVLSAGETVSVKIKDVNTETRRIALSLRD 361

Query: 657 KPTRVSEDDLVK--LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
                 +D   +  +GS V+G V+  T   + V  +A G + G +P 
Sbjct: 362 AEGDPWQDAAQRFAVGSTVTGTVESRTQYGLFV-TLAPGIT-GLLPA 406



 Score = 41.2 bits (95), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 13/184 (7%)

Query: 439 YVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSD-- 495
            + +S+++   V   ++    G  VRV++LG  ++ +G     L     EG  +  +   
Sbjct: 227 MIHLSELSWSRVGAADEAVSPGDLVRVKVLGISKNDKGQIRISLSRKQAEGDPWLDAPER 286

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-KPGKKFKVGAELVFRVL 554
           +  G VV+GKV+ +  FGA V+   GV+ L  +  MS  + V KP +    G       +
Sbjct: 287 LSAGAVVQGKVVRLAPFGAFVELLPGVEGLIHVSEMSWAKRVNKPEEVLSAG-----ETV 341

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI----EKHGCFVRFYNGVQ 610
            VK K +    ++  +  + A    + +A  R      +T       ++G FV    G+ 
Sbjct: 342 SVKIKDVNTETRRIALSLRDAEGDPWQDAAQRFAVGSTVTGTVESRTQYGLFVTLAPGIT 401

Query: 611 GFAP 614
           G  P
Sbjct: 402 GLLP 405


>gi|294673916|ref|YP_003574532.1| 30S ribosomal protein S1 [Prevotella ruminicola 23]
 gi|294472255|gb|ADE81644.1| ribosomal protein S1 [Prevotella ruminicola 23]
          Length = 592

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 193/490 (39%), Gaps = 90/490 (18%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KR 560
           KG +I VD FG     PG    + P+    +F          VG  + F+V+ +    + 
Sbjct: 139 KGGMI-VDVFGIEAFLPGSQIDVHPIRDYDQF----------VGKTMEFKVVKINQEFRN 187

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + V+HK  L++++L   +   E   +L    I  G +  I  +G FV    GV G    +
Sbjct: 188 VVVSHK-ALIEAELE--AQKKEIIGKLEKGQILEGTVKNITSYGVFVDL-GGVDGLIHIT 243

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLV 673
           +L      +P  +  + Q +   I+      RRI L        P    + DL K+G  V
Sbjct: 244 DLSWGRVDDPHKVVELDQKINVVILDFDDEKRRIALGLKQLTPHPWDALDADL-KVGDHV 302

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-LLVLDN 732
            G V V+      V +  +   +G I    ++   +H    +  +K G + +  +L LD 
Sbjct: 303 KGKVVVIADYGAFVEI--QPGVEGLIHVSEMS-WSQHLRSAQEFLKVGDDVEAVILTLDR 359

Query: 733 ESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVH-GYVCNIIETGCFVRFLGRLTGFAP 790
           +   + L      I   ++ P +A    +P    H   V N    G FV           
Sbjct: 360 DERKMSLG-----IKQLREDPWEAIETKYPVGSKHTAKVRNFTNFGVFVEL--------- 405

Query: 791 RSKAVDG--QRADLSKT---------YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             + VDG    +DLS T           VG+ +   +LD++ E  R++L  KQ       
Sbjct: 406 -EEGVDGLIHISDLSWTKKVKHPSEFTQVGEQIEVVVLDIDKENRRLSLGHKQ------- 457

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                    LEE    +   K           + +GS+ EGK+ E  + G VV+ EE  +
Sbjct: 458 ---------LEENPWDVFEGK-----------YAVGSIHEGKISEMLEKGAVVALEE--N 495

Query: 900 VYGFITHHQLA---GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
           V GF T   L    G+  ++G  +Q  +++  K  + + LS    F D  RE      A+
Sbjct: 496 VEGFATPKHLVKEDGSQAQAGETLQFKVIEFNKDSKRIILSHSRTFEDPARE-EKKAAAK 554

Query: 957 KKKRKREASK 966
           K  RK +  K
Sbjct: 555 KGGRKNDTPK 564



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF-KVG--AELV 550
           +D+K G  VKGKV+ +  +GA V+   GV+ L  +  MS  + ++  ++F KVG   E V
Sbjct: 294 ADLKVGDHVKGKVVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLKVGDDVEAV 353

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
              L    +++++  K+       AI + Y   +        +      G FV    GV 
Sbjct: 354 ILTLDRDERKMSLGIKQLREDPWEAIETKYPVGSKHTAK---VRNFTNFGVFVELEEGVD 410

Query: 611 GFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINL 652
           G    S+L      + PS    VG+ ++  ++     +RR++L
Sbjct: 411 GLIHISDLSWTKKVKHPSEFTQVGEQIEVVVLDIDKENRRLSL 453



 Score = 48.1 bits (113), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 23/179 (12%)

Query: 1313 PLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
            P+  YD+  G+ ++ KV++I++  R   +V +S ++ ++        ++           
Sbjct: 162  PIRDYDQFVGKTMEFKVVKINQEFR---NVVVSHKALIEAELEAQKKEI----------- 207

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
              I  L    I++G VKN+TS G F+ L   +D  + +++LS G V+ P K   + + + 
Sbjct: 208  --IGKLEKGQILEGTVKNITSYGVFVDLG-GVDGLIHITDLSWGRVDDPHKVVELDQKIN 264

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
              +L  +   +R+ + LK          +    ++L VGD V G++  +  YG F+ I+
Sbjct: 265  VVILDFDDEKRRIALGLKQLTPHPWDALD----ADLKVGDHVKGKVVVIADYGAFVEIQ 319


>gi|403046521|ref|ZP_10901990.1| 30S ribosomal protein S1 [Staphylococcus sp. OJ82]
 gi|402763217|gb|EJX17310.1| 30S ribosomal protein S1 [Staphylococcus sp. OJ82]
          Length = 393

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 22/250 (8%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D+      P++ +ST      SD  E +V KL+ +  + +  RV 
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDF-EGQVLKLKVEELDPANNRV- 168

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
           IL  + +E L     K      L         G V++GKV  + +FGA V   GGV  L 
Sbjct: 169 ILSRKAVEALENAEKKDDLLNSL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLV 220

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 584
            +  +S   +  P     +G  +  +V  V   S+RI+++ K TL     +I   + E  
Sbjct: 221 HVSELSHEHVKSPEDVVSIGDTVNVKVKSVDRDSERISLSIKDTLPSPFESIKGEFNEGD 280

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
              +  G + ++   G FV    GVQG    SE+       PS +   G+VV  +++   
Sbjct: 281 ---VIEGTVVRLTNFGAFVEIKPGVQGLVHISEIRHTHIGSPSEVLEPGEVVGVKVLGVD 337

Query: 645 PASRRINLSF 654
               RI+LS 
Sbjct: 338 VEKERISLSI 347



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++K G  V G++  +D    IV   G     + P+  +S   I  PG   KVG E+   V
Sbjct: 12  EIKEGDTVTGEIQEIDEKQVIVNINGAKFNGIIPISQLSTHHIDNPGDAVKVGDEIGAYV 71

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 609
             V+      T    L K +L    SY    ++L         +T++ K G  V    G 
Sbjct: 72  TKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNKTIEAKVTEVVKGGLVVDV--GQ 129

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-----D 664
           +GF P S +  D   E  S +  GQV+K ++    PA+ R+ LS   K     E     D
Sbjct: 130 RGFVPASLISTDF-IEDFSDFE-GQVLKLKVEELDPANNRVILS--RKAVEALENAEKKD 185

Query: 665 DLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
           DL+     G ++ G V  +T     V +   G   G +    L+   EH    + V+  G
Sbjct: 186 DLLNSLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVSIG 240

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
              + ++  +D +S  + LS K +L +  + +  +    +   V+ G V  +   G FV 
Sbjct: 241 DTVNVKVKSVDRDSERISLSIKDTLPSPFESIKGE---FNEGDVIEGTVVRLTNFGAFVE 297

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
               + G    S+         S+    G+ V   +L V+ E  RI+LS+K + 
Sbjct: 298 IKPGVQGLVHISEIRHTHIGSPSEVLEPGEVVGVKVLGVDVEKERISLSIKATL 351



 Score = 47.0 bits (110), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 159/397 (40%), Gaps = 76/397 (19%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           ++ ++EG  +T  ++ I++   I++     F G +P + L+    +N G  VK G  +  
Sbjct: 10  IKEIKEGDTVTGEIQEIDEKQVIVNINGAKFNGIIPISQLSTHHIDNPGDAVKVGDEIGA 69

Query: 283 VV------------------RSIDRTRKVVYLSSDPD---TVSKCVTKDLKG-ISIDL-- 318
            V                  R ++  +   +L    D   T+   VT+ +KG + +D+  
Sbjct: 70  YVTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNKTIEAKVTEVVKGGLVVDVGQ 129

Query: 319 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
              VP  ++ST           +   + F G V    ++   P  N             R
Sbjct: 130 RGFVPASLISTD---------FIEDFSDFEGQVLKLKVEELDPANN-------------R 167

Query: 377 ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
           ++       A+        L N      +  GD+  + KV R+    G  +DI       
Sbjct: 168 VILSRKAVEALENAEKKDDLLNS-----LNEGDVI-EGKVARL-TNFGAFVDIGGVD--- 217

Query: 437 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLVFTH 493
              V +S+++ E V+  E     G  V V++    R  E ++  I     S FE +    
Sbjct: 218 -GLVHVSELSHEHVKSPEDVVSIGDTVNVKVKSVDRDSERISLSIKDTLPSPFESI---K 273

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            +   G V++G V+ + +FGA V+   GV+ L  +  +    I  P +  + G  +  +V
Sbjct: 274 GEFNEGDVIEGTVVRLTNFGAFVEIKPGVQGLVHISEIRHTHIGSPSEVLEPGEVVGVKV 333

Query: 554 LG--VKSKRITVTHKKTL-----VKSKLAILSSYAEA 583
           LG  V+ +RI+++ K TL     V+S  A   SY E+
Sbjct: 334 LGVDVEKERISLSIKATLEAENVVESDSATTKSYLES 370



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    IG  V  +V S
Sbjct: 191  LNEGDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVKSPEDVVSIGDTVNVKVKS 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V+  S+R+ +++K  D+  +    I      + GD++ G + R+ ++G F+ I
Sbjct: 250  VDRDSERISLSIK--DTLPSPFESIK--GEFNEGDVIEGTVVRLTNFGAFVEI 298


>gi|339451714|ref|ZP_08655084.1| 40S ribosomal protein S1 [Leuconostoc lactis KCTC 3528]
          Length = 396

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 29/266 (10%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
           GD  D +KV+   RG GL++D+       P S  A   +SD+ + + + ++ +  E    
Sbjct: 111 GDTVD-AKVINAVRG-GLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 168

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
             R++  R     A    + +A    VF+   V  G VV+G V  +  FGA V   GGV 
Sbjct: 169 NARLILSRK----AVAAQERAAQLAEVFSKLSV--GEVVEGTVARLTDFGAFVDL-GGVD 221

Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYA 581
            L  +  +S   + KP      G ++  ++L + ++  RI+++ K T           + 
Sbjct: 222 GLVHVSEISHDRVKKPADVLTKGDKVDVKILALDTEKGRISLSIKATQ-------RGPWD 274

Query: 582 EATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
           EA D++    +  G + +++  G FV    G++G    S++       PS +   G  V+
Sbjct: 275 EAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQ 334

Query: 638 CRIMSSIPASRRINLSFMM---KPTR 660
            +++   PA  RI+LS      KP R
Sbjct: 335 VKVLDIKPAEERISLSMKALEEKPER 360



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 150/352 (42%), Gaps = 34/352 (9%)

Query: 496 VKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG----AELV 550
           +K G VV G+++A+D+   A+V    G + + P    S+   +    + K+G    A ++
Sbjct: 19  IKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVI 78

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
             V   K     +  KK L   K     S+AE     +    I  +   G  +   NGV+
Sbjct: 79  SNVTSDKEGVAYLLSKKRLDARKAWENLSFAEGD--TVDAKVINAV--RGGLIVDVNGVR 134

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
           GF P S +      + +   +  + +K +++   PA+ R+ LS      +     L ++ 
Sbjct: 135 GFVPASMVAERFVSDLNQFKN--KDIKAQVIEIDPANARLILSRKAVAAQERAAQLAEVF 192

Query: 670 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGY 722
                G +V G V  +T     V +   G   G +   H++  + H  V K   V+  G 
Sbjct: 193 SKLSVGEVVEGTVARLTDFGAFVDL---GGVDGLV---HVS-EISHDRVKKPADVLTKGD 245

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFV 779
           + D ++L LD E   + LS     I + Q+ P D  A  I   SV+ G V  + + G FV
Sbjct: 246 KVDVKILALDTEKGRISLS-----IKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFV 300

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             L  + G    S+  + +  + S+    G  V+  +LD+     RI+LS+K
Sbjct: 301 EILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMK 352



 Score = 44.7 bits (104), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 183/433 (42%), Gaps = 67/433 (15%)

Query: 1047 TETSSSKRAKKKSSYD---VGSLVQAEITEI-KPLELRLKFGIGFHGRIHITEVNDDKSN 1102
            +ET++   A  +S+ D   VG +V  E+  I    +  +    G  G +   E +DD+ N
Sbjct: 2    SETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDR-N 60

Query: 1103 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
            +  NL    KIG T+ A +I  SN    K+   + LS K   L   +    L F E D  
Sbjct: 61   I--NLADELKIGDTIEAVVI--SNVTSDKEGVAYLLSKK--RLDARKAWENLSFAEGDTV 114

Query: 1163 IGQRVT----GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
              + +     G +  V+     +  S  + A+ F+       S+L +F+      K +  
Sbjct: 115  DAKVINAVRGGLIVDVNGVRGFVPAS--MVAERFV-------SDLNQFKN-----KDIKA 160

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             V+ I+      RL+L        ++   ++   + + +  G++V G ++++     G  
Sbjct: 161  QVIEIDPANA--RLILSRKAVAAQERAAQLAE--VFSKLSVGEVVEGTVARLTDF--GAF 214

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V +G  + G VH +E+ +  V  P         D L+   +G  V  K+L +  T +G  
Sbjct: 215  VDLG-GVDGLVHVSEISHDRVKKPA--------DVLT---KGDKVDVKILALD-TEKG-- 259

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             + LS++++                   G   E  + ++   +++G VK V   G F+ +
Sbjct: 260  RISLSIKAT-----------------QRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI 302

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
               ++  V +S +S+  +E+P +    G  V  +VL ++P  +R+ +++K  + +   + 
Sbjct: 303  LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERED 362

Query: 1459 EINNLSNLHVGDI 1471
               N  +    DI
Sbjct: 363  RRGNDGSASRADI 375


>gi|399911179|ref|ZP_10779493.1| 30S ribosomal protein S1 [Halomonas sp. KM-1]
          Length = 558

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 139/349 (39%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  + G V  +  +GA V   GGV  L  +  M+   I  P +   VG E+  +VL 
Sbjct: 189 LQEGQQIVGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVAVGDEINVKVLK 247

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      ++I   Y E T   +    +T +  +GCF     GV+G  
Sbjct: 248 FDRERNRVSLGLKQLGEDPWVSITERYPEGT---VVQARVTNLTDYGCFAELEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLG 670
             SE+   +    PS + ++G  V   I+      RRI+L          E  +     G
Sbjct: 305 HVSEMDWTNKNIHPSKVVNIGDEVDVMILDIDEERRRISLGIKQCTANPWETFNAQYNKG 364

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ-L 727
             VSG +  +T   + +     G   G     HL+D     T  ++V   K G E +  +
Sbjct: 365 DRVSGTIKSITDFGIFI-----GLEGGIDGLVHLSDLSWSETGEEAVRRFKKGDEAEAVI 419

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPN---SVVHGYVCNIIETGCFVRFL 782
           L +D E   + L  K        QL SD  A ++  N   S+V G V  +      V   
Sbjct: 420 LSIDPERERISLGIK--------QLDSDPVAEYLAVNDKGSIVSGRVIEVDAKEAHVELA 471

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S+    +  D       G +V + I++V+ +   I LS+K
Sbjct: 472 TDVVAVLKASEISADRVEDARNVLSEGDTVEARIVNVDRKNRAINLSIK 520



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 1381 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVE 1437
            +VQ  V N+T  GCF  L   ++  V +S +   +      P K   IG  V   +L ++
Sbjct: 279  VVQARVTNLTDYGCFAELEEGVEGLVHVSEMD--WTNKNIHPSKVVNIGDEVDVMILDID 336

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
               +R+ + +K     TA+  E  N +  + GD V G IK +  +G+FI +E
Sbjct: 337  EERRRISLGIKQC---TANPWETFN-AQYNKGDRVSGTIKSITDFGIFIGLE 384



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 5/196 (2%)

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
           ++ GI + +A     F ++    G  V G + ++  FG  +   GG+  L  L  +S  E
Sbjct: 342 ISLGIKQCTANPWETF-NAQYNKGDRVSGTIKSITDFGIFIGLEGGIDGLVHLSDLSWSE 400

Query: 536 IVKPG-KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWI 593
             +   ++FK G E    +L +  +R  ++     + S    ++ Y    D+  I  G +
Sbjct: 401 TGEEAVRRFKKGDEAEAVILSIDPERERISLGIKQLDSDP--VAEYLAVNDKGSIVSGRV 458

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            +++     V     V      SE+  D   +  ++   G  V+ RI++    +R INLS
Sbjct: 459 IEVDAKEAHVELATDVVAVLKASEISADRVEDARNVLSEGDTVEARIVNVDRKNRAINLS 518

Query: 654 FMMKPTRVSEDDLVKL 669
              K    +  +L KL
Sbjct: 519 IKAKDQDDTRQNLKKL 534


>gi|339635169|ref|YP_004726810.1| 30S ribosomal protein S1P [Weissella koreensis KACC 15510]
 gi|420161165|ref|ZP_14667936.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
 gi|338854965|gb|AEJ24131.1| SSU ribosomal protein S1P [Weissella koreensis KACC 15510]
 gi|394745915|gb|EJF34733.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
          Length = 432

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 17/248 (6%)

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
           ++ V +V +G GL++D+       PA    S +    V+ L  +YK G  V+ +I+    
Sbjct: 117 EAPVTQVVKG-GLVVDVAGVRGFIPA----SMIENRFVQDL-NQYK-GQTVKAQIIEINV 169

Query: 473 LEGL----ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
            E         +L A   E L     ++  G +V+GKV  + +FGA +   GGV  L  +
Sbjct: 170 AESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVARMTNFGAFIDL-GGVDGLVHV 228

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 586
             +S   + +P     VG ++  +VLG+  + +RI+++ K T      +   +  E T  
Sbjct: 229 SEISYERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWDSAAQNAPEGT-- 286

Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
            +  G + ++   G FV  + GV+G    S++       PS +   G  V+ +++   P 
Sbjct: 287 -VLEGTVRRVVDFGAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPE 345

Query: 647 SRRINLSF 654
            +R++LS 
Sbjct: 346 RQRLSLSI 353



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 145/372 (38%), Gaps = 66/372 (17%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQ----VVKCRIMSS------IPASRRINL--SFM 655
           GV+G  P  EL  D   + + +  VG     VVK  I S       I + R++    ++ 
Sbjct: 45  GVEGVIPARELTSDRDADVNDLVKVGDKIEAVVKMPITSEKEGYSWILSKRQLEARRAWE 104

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH--ATV 713
              ++ +EDD+V+     + V  VV    VV     +G+   ++        L       
Sbjct: 105 EIASKYNEDDIVE-----APVTQVVKGGLVVDVAGVRGFIPASMIENRFVQDLNQYKGQT 159

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNI 772
           +K+         Q++ ++   S L+LS K  L    ++ L      +    +V G V  +
Sbjct: 160 VKA---------QIIEINVAESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVARM 210

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
              G F+  LG + G    S+    + +  S    VG+ V+  +L ++ E  RI+LS+K 
Sbjct: 211 TNFGAFID-LGGVDGLVHVSEISYERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKA 269

Query: 833 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
           +     D                  S+  N  E         G+V+EG V    DFG  V
Sbjct: 270 TQPGPWD------------------SAAQNAPE---------GTVLEGTVRRVVDFGAFV 302

Query: 893 SFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
             E    V G +   Q++   VE       +G  +Q  +LDV    + + LS+K +    
Sbjct: 303 --EVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLSIKALTEAP 360

Query: 946 FREANSNRQAQK 957
            RE   N   ++
Sbjct: 361 AREGGDNNDGEQ 372



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 43/362 (11%)

Query: 492 THSDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
              DVK G VV G+V+ +D +   +V   G GV+ + P   ++           KVG ++
Sbjct: 14  AQPDVKVGDVVTGEVLTIDDAHQVVVGIDGAGVEGVIPARELTSDRDADVNDLVKVGDKI 73

Query: 550 VFRVLGVKSKRITVTHKKT-----LVKSKLAILSSYAEATDRL----ITHGWITKIEKHG 600
              V      ++ +T +K      L K +L    ++ E   +     I    +T++ K G
Sbjct: 74  EAVV------KMPITSEKEGYSWILSKRQLEARRAWEEIASKYNEDDIVEAPVTQVVKGG 127

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSF 654
             V    GV+GF P S +  +   +  + Y  GQ VK +I+      S +  SR+  LS 
Sbjct: 128 LVVDVA-GVRGFIPASMIE-NRFVQDLNQYK-GQTVKAQIIEINVAESRLILSRKAVLSA 184

Query: 655 MMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
                  RV E+  + +G +V G V  +T     + +   G   G +    ++   E  +
Sbjct: 185 ERSEALKRVFEE--LTVGDIVEGKVARMTNFGAFIDL---GGVDGLVHVSEIS--YERVS 237

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYV 769
               V+  G +   ++L LD E   + LS     I + Q  P D  A +    +V+ G V
Sbjct: 238 QPSDVLSVGEDVKVKVLGLDPEKERISLS-----IKATQPGPWDSAAQNAPEGTVLEGTV 292

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             +++ G FV     + G    S+       + S     G  V+  +LDVN E  R++LS
Sbjct: 293 RRVVDFGAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLS 352

Query: 830 LK 831
           +K
Sbjct: 353 IK 354



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 53/239 (22%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
            +E DIV   +++++ G  GLVV +   + G +  + ++N  V D            L+ Y
Sbjct: 111  NEDDIVEAPVTQVVKG--GLVVDVA-GVRGFIPASMIENRFVQD------------LNQY 155

Query: 1318 DEGQFVKCKVLEI----SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1373
             +GQ VK +++EI    SR +       LS ++ L    S              + L+++
Sbjct: 156  -KGQTVKAQIIEINVAESRLI-------LSRKAVLSAERS--------------EALKRV 193

Query: 1374 -EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
             E+L+   IV+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +
Sbjct: 194  FEELTVGDIVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYERVSQPSDVLSVGEDVKVK 252

Query: 1433 VLSVEPLSKRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            VL ++P  +R+ +++K +      +A+Q       N   G ++ G ++RV  +G F+ +
Sbjct: 253  VLGLDPEKERISLSIKATQPGPWDSAAQ-------NAPEGTVLEGTVRRVVDFGAFVEV 304



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 160/387 (41%), Gaps = 69/387 (17%)

Query: 1084 GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK-- 1141
            G G  G I   E+  D+   V +L    K+G  + A  + K      K+ + W LS +  
Sbjct: 43   GAGVEGVIPARELTSDRDADVNDLV---KVGDKIEA--VVKMPITSEKEGYSWILSKRQL 97

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
             +     EI SK  + E D+     V   V +V     ++ ++     + FI  S  E  
Sbjct: 98   EARRAWEEIASK--YNEDDI-----VEAPVTQVVKGGLVVDVA---GVRGFIPASMIENR 147

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF----- 1256
             +Q+  +  + G+ V   ++ IN  +   RL+L       S K V +S +  +       
Sbjct: 148  FVQDLNQ--YKGQTVKAQIIEINVAES--RLIL-------SRKAV-LSAERSEALKRVFE 195

Query: 1257 -IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1315
             +  GDIV G+++++ +   G  + +G  + G VH +E+    VS P         D LS
Sbjct: 196  ELTVGDIVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYERVSQP--------SDVLS 244

Query: 1316 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1375
                G+ VK KVL +         + LS++++                  PG      ++
Sbjct: 245  ---VGEDVKVKVLGLDPEKE---RISLSIKAT-----------------QPGPWDSAAQN 281

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
                 +++G V+ V   G F+ +   ++  V +S +S  +VE+P      G  V  +VL 
Sbjct: 282  APEGTVLEGTVRRVVDFGAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLD 341

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINN 1462
            V P  +R+ +++K      A +   NN
Sbjct: 342  VNPERQRLSLSIKALTEAPAREGGDNN 368


>gi|161611290|ref|YP_139113.2| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
 gi|161936373|ref|YP_141003.2| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
 gi|386086285|ref|YP_006002159.1| Putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus thermophilus ND03]
 gi|386344285|ref|YP_006040449.1| 30S ribosomal protein S1 [Streptococcus thermophilus JIM 8232]
 gi|387909377|ref|YP_006339683.1| 30S ribosomal protein S1 [Streptococcus thermophilus MN-ZLW-002]
 gi|312277998|gb|ADQ62655.1| Putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus thermophilus ND03]
 gi|339277746|emb|CCC19494.1| 30S ribosomal protein S1 [Streptococcus thermophilus JIM 8232]
 gi|387574312|gb|AFJ83018.1| 30S ribosomal protein S1 [Streptococcus thermophilus MN-ZLW-002]
          Length = 400

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 159/365 (43%), Gaps = 39/365 (10%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S+V  G VV  +VI+VD+  A V   G G++ +     ++        ++VK
Sbjct: 4   FEELLNSVSEVSTGDVVTAEVISVDNDQANVVIEGTGIEGVLTRRELTNDRDANVADLVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G+  +V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  DGETLEV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
           K G  V F  G++GF P S +  D     ++   VGQ    +I    PA  R    F++ 
Sbjct: 119 KGGLSVEF-EGLRGFIPASMI--DTRFVRNTEQFVGQEFDAKIKEVDPAENR----FILS 171

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--- 714
              V E + ++    V   ++V    +VV   +A+  S G        D L H T +   
Sbjct: 172 RREVVEAEAIEARKEVFSKLEV---GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHE 228

Query: 715 -----KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
                KSV+  G E + ++L +D E+  + LS K +        P D     +    V+ 
Sbjct: 229 RNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTPG-----PWDGVEQKLAAGDVIE 283

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V  + + G FV  L  + G    S+    +  +      VGQ V   +L+VN++  R+
Sbjct: 284 GKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAERV 343

Query: 827 TLSLK 831
           +LS+K
Sbjct: 344 SLSIK 348



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 18/183 (9%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +++A A E      S ++ G VV GKV  + SFGA +   GGV  L  +  +S    V P
Sbjct: 175 VVEAEAIEARKEVFSKLEVGSVVTGKVARLTSFGAFIDL-GGVDGLVHVTELSHERNVSP 233

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTL------VKSKLAILSSYAEATDRLITHG 591
                VG E+  +VL +  ++ R++++ K T       V+ KLA       A D  +  G
Sbjct: 234 KSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLA-------AGD--VIEG 284

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            + ++   G FV    G+ G    S++       P  +  VGQ V  +++     + R++
Sbjct: 285 KVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAERVS 344

Query: 652 LSF 654
           LS 
Sbjct: 345 LSI 347



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 169/418 (40%), Gaps = 59/418 (14%)

Query: 576 ILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           +L+S +E +T  ++T   I+        V    G++G   R EL  D     + +   G+
Sbjct: 7   LLNSVSEVSTGDVVTAEVISVDNDQANVVIEGTGIEGVLTRRELTNDRDANVADLVKDGE 66

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
            ++  ++  +       +++++   R+          LV    +VVT        +  G 
Sbjct: 67  TLEVLVLRQVVGKDTDTVTYLVSKKRLEARK--AWDKLVGREEEVVTVKGT--RAVKGGL 122

Query: 695 S------KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 747
           S      +G IP    A  ++   V  +    G EFD ++  +D   +  +LS +  +  
Sbjct: 123 SVEFEGLRGFIP----ASMIDTRFVRNTEQFVGQEFDAKIKEVDPAENRFILSRREVVEA 178

Query: 748 SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
            A +   +  S +   SVV G V  +   G F+  LG + G    ++    +        
Sbjct: 179 EAIEARKEVFSKLEVGSVVTGKVARLTSFGAFID-LGGVDGLVHVTELSHERNVSPKSVV 237

Query: 807 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
            VG  +   +L ++ E GR++LSLK +     D         +E+K+A            
Sbjct: 238 SVGDEIEVKVLAIDEEAGRVSLSLKATTPGPWDG--------VEQKLAA----------- 278

Query: 867 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSV 919
                   G VIEGKV    DFG  V  E    + G +   Q++   VE+       G  
Sbjct: 279 --------GDVIEGKVKRLTDFGGFV--EVLPGIDGLVHISQISHKRVENPKDVLSVGQD 328

Query: 920 IQAAILDV-AKAERLVDLSLKTVF---IDRFREANSNRQAQKKKRKREASKDLGVHQT 973
           +   +L+V A AER V LS+K +     +   E N  RQ++ ++ KR+  +D  + +T
Sbjct: 329 VTVKVLEVNADAER-VSLSIKALEERPANAEGENNEKRQSRPRRPKRQEKRDYELPET 385



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 34/203 (16%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G +V G+++++ S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GSVVTGKVARLTSF--GAFIDLG-GVDGLVHVTELSH-----------ERNVSPKSVVSV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G  ++ KVL I         V LSL+++                 TPG      + L+  
Sbjct: 240  GDEIEVKVLAIDEE---AGRVSLSLKAT-----------------TPGPWDGVEQKLAAG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G VK +T  G F+ +   +D  V +S +S   VE+P+    +G+ V  +VL V   
Sbjct: 280  DVIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQSEINN 1462
            ++RV +++K  + R A+    NN
Sbjct: 340  AERVSLSIKALEERPANAEGENN 362



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L    +V G V  +TS G FI L   +D  V ++ LS     SP+    +G  +  +VL+
Sbjct: 191  LEVGSVVTGKVARLTSFGAFIDLG-GVDGLVHVTELSHERNVSPKSVVSVGDEIEVKVLA 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++  + RV ++LK +        E      L  GD++ G++KR+  +G F+ +
Sbjct: 250  IDEEAGRVSLSLKATTPGPWDGVE----QKLAAGDVIEGKVKRLTDFGGFVEV 298


>gi|417646985|ref|ZP_12296834.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU144]
 gi|329725334|gb|EGG61817.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU144]
          Length = 392

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 151/372 (40%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 721 G-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L    + +  +    H + V+ G V  +   G FV
Sbjct: 240 GEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGE---FHEDDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+         ++    GQ V   IL ++ +  RI+LS+K +      
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 IESDASTTQSYL 368



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG   ++  + +   S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGEFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSF 654
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 45/237 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     +  Y L  S +QL ++ S+      +  + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            DA           K ++L S                G VI+GKV    +FG  +  
Sbjct: 180 NDAK----------KASILDSLNE-------------GDVIDGKVARLTNFGAFIDI 213


>gi|161609266|ref|NP_890000.2| 30S ribosomal protein S1 [Bordetella bronchiseptica RB50]
 gi|161610386|ref|NP_885303.2| 30S ribosomal protein S1 [Bordetella parapertussis 12822]
          Length = 571

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 153/356 (42%), Gaps = 36/356 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 202 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 260

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 261 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 317

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 318 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 375

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     +  ++V   K G E + +++
Sbjct: 376 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVL 430

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVRFL 782
            +D +   + L  K        QL  D      A+H    +VV G + ++   G  +   
Sbjct: 431 GIDTDKERISLGIK--------QLEGDPFNNFVATH-DKGAVVPGTIKSVEPKGAVITLS 481

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
             + G+   S+   G+  D +     G+++ + I++++ +   I LS+K    + T
Sbjct: 482 VDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAET 537



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 133/309 (43%), Gaps = 47/309 (15%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V A++L  D     V L +     +P++   R  P       KV ++ D    V V+ 
Sbjct: 249 QEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEA 308

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ +  E  V ++++        R RI LG +    
Sbjct: 309 GIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDED-------RRRISLGMKQC-- 359

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + + +E      ++ K G  V+G + ++  FG  V  PGG+  L    H+S+  
Sbjct: 360 ------RQNPWEEFA---TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLV---HLSDLS 407

Query: 536 IVKPG----KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDR-LI 588
             + G    + FK G EL   VLG+ +  +RI++  K+     +    +++    D+  +
Sbjct: 408 WTESGEEAVRNFKKGDELEAVVLGIDTDKERISLGIKQL----EGDPFNNFVATHDKGAV 463

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G I  +E  G  +     V+G+   SE+      + +++   G+ ++  I++    +R
Sbjct: 464 VPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKAR 523

Query: 649 RINLSFMMK 657
            I LS   +
Sbjct: 524 SIQLSIKAR 532



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 134/333 (40%), Gaps = 62/333 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 202  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 254

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 255  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 304

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 305  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 350

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 351  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 394

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + ES E   + F  G  +   VL ++   +R+ + +K  +     
Sbjct: 395  GGIDGLVHLSDLS--WTESGEEAVRNFKKGDELEAVVLGIDTDKERISLGIKQLEG---- 448

Query: 1457 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1488
                NN    H  G +V G IK VE  G  IT+
Sbjct: 449  -DPFNNFVATHDKGAVVPGTIKSVEPKGAVITL 480



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 162/411 (39%), Gaps = 68/411 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 163  EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 220

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ         
Sbjct: 221  LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ--------- 271

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    L      G+ L             GKV    D+G  V  E   +  
Sbjct: 272  ------LGEDPWVGLARRYPQGTRLF------------GKVTNLTDYGAFVEVEAGIEGL 313

Query: 902  GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN-RQ 954
              ++        V+       G  ++  +L++ +  R + L +K    + + E  +N ++
Sbjct: 314  VHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKR 373

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQ-- 1012
              K +   ++  D GV                 + LP      G   +SD +  +  +  
Sbjct: 374  GDKVRGAIKSITDFGVF----------------VGLP--GGIDGLVHLSDLSWTESGEEA 415

Query: 1013 -KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             + F  G  + A V+ + +     R+ L +K +     ++       +++D G++V   I
Sbjct: 416  VRNFKKGDELEAVVLGIDTDKE--RISLGIKQLEGDPFNNF-----VATHDKGAVVPGTI 468

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
              ++P    +   +   G +  +E++   S  VE+  +  K G+ + A I+
Sbjct: 469  KSVEPKGAVITLSVDVEGYLRASEIS---SGRVEDATTVLKAGENIEAMIV 516


>gi|15892670|ref|NP_360384.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
 gi|81528161|sp|Q92HM4.1|RS1_RICCN RecName: Full=30S ribosomal protein S1
 gi|15619842|gb|AAL03285.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
          Length = 568

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 153/361 (42%), Gaps = 20/361 (5%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +      ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360

Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                P T+ +E++ V  G+++   +  +T   +  +V       G I    ++   +  
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
            ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   + 
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            + + G  V    ++ GF  R++  D +     + + + + + + ++ +   TGRI LS+
Sbjct: 473 EVKDEGLEVLLNDKVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSV 532

Query: 831 K 831
           K
Sbjct: 533 K 533



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 131/600 (21%), Positives = 243/600 (40%), Gaps = 99/600 (16%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V    + ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDIIIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        +
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LD 249

Query: 724  FDQ---LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
            F+Q   ++V+  +  N  +S     ++S    P +A          + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKNKRISLGIKQLDSN---PWEAIKEEFPVGKQMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                  K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + ++E 
Sbjct: 400  MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI 457

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
            +         +K    K L        I E+  E   VL   +    I    +SD   ++
Sbjct: 458  SDEY------KKGTIVKAL--------ITEVKDEGLEVLLNDKVAGFIKRTELSDEKDEQ 503

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGSLV 1067
             P+  F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G ++
Sbjct: 504  KPE-MFQIDKEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGDIL 560



 Score = 43.9 bits (102), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
            ++ EK  + L ++  Q+            N  T   E + VG  I   +  +   G+ V 
Sbjct: 348  VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V
Sbjct: 396  LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QV 442

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             L ++                   +P  + E  ++     IV+  +  V  +G  ++L+ 
Sbjct: 443  SLGIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLND 485

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            K+   +  + LSD   E   + F I K +  +V+S+E  + R+ +++K 
Sbjct: 486  KVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSVKA 534


>gi|410472341|ref|YP_006895622.1| 30S ribosomal protein S1 [Bordetella parapertussis Bpp5]
 gi|412338592|ref|YP_006967347.1| 30S ribosomal protein S1 [Bordetella bronchiseptica 253]
 gi|427815529|ref|ZP_18982593.1| 30S ribosomal protein S1 [Bordetella bronchiseptica 1289]
 gi|33574088|emb|CAE38413.1| 30S ribosomal protein S1 [Bordetella parapertussis]
 gi|33576879|emb|CAE33959.1| 30S ribosomal protein S1 [Bordetella bronchiseptica RB50]
 gi|408442451|emb|CCJ48991.1| 30S ribosomal protein S1 [Bordetella parapertussis Bpp5]
 gi|408768426|emb|CCJ53189.1| 30S ribosomal protein S1 [Bordetella bronchiseptica 253]
 gi|410566529|emb|CCN24092.1| 30S ribosomal protein S1 [Bordetella bronchiseptica 1289]
          Length = 576

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 153/356 (42%), Gaps = 36/356 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG V  +  +GA V   GG+  L  +  M+   +  P +  +VG E+  +VL    
Sbjct: 207 GAVVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQ 265

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+++  K+      + +   Y + T RL   G +T +  +G FV    G++G    S
Sbjct: 266 EKSRVSLGVKQLGEDPWVGLARRYPQGT-RLF--GKVTNLTDYGAFVEVEAGIEGLVHVS 322

Query: 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGS 671
           E+   +   +P  +  +G+ V+  ++      RRI+L   MK  R +  +      K G 
Sbjct: 323 EMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLG--MKQCRQNPWEEFATNFKRGD 380

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
            V G +  +T   V V     G   G     HL+D     +  ++V   K G E + +++
Sbjct: 381 KVRGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVL 435

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSD------ASHIHPNSVVHGYVCNIIETGCFVRFL 782
            +D +   + L  K        QL  D      A+H    +VV G + ++   G  +   
Sbjct: 436 GIDTDKERISLGIK--------QLEGDPFNNFVATH-DKGAVVPGTIKSVEPKGAVITLS 486

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
             + G+   S+   G+  D +     G+++ + I++++ +   I LS+K    + T
Sbjct: 487 VDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAET 542



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 132/306 (43%), Gaps = 47/306 (15%)

Query: 371 KKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHV----KVGDIYDQSKVVRVDR 421
           ++V A++L  D     V L +     +P++   R  P       KV ++ D    V V+ 
Sbjct: 254 QEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEA 313

Query: 422 GL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI-LGFRHLEG 475
           G+ GL+    +D  +  V     VT+ +  E  V ++++        R RI LG +    
Sbjct: 314 GIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDED-------RRRISLGMKQC-- 364

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + + +E      ++ K G  V+G + ++  FG  V  PGG+  L    H+S+  
Sbjct: 365 ------RQNPWEEFA---TNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLV---HLSDLS 412

Query: 536 IVKPG----KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDR-LI 588
             + G    + FK G EL   VLG+ +  +RI++  K+     +    +++    D+  +
Sbjct: 413 WTESGEEAVRNFKKGDELEAVVLGIDTDKERISLGIKQL----EGDPFNNFVATHDKGAV 468

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G I  +E  G  +     V+G+   SE+      + +++   G+ ++  I++    +R
Sbjct: 469 VPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKAR 528

Query: 649 RINLSF 654
            I LS 
Sbjct: 529 SIQLSI 534



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 134/333 (40%), Gaps = 62/333 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     PSE+        +G+ V   
Sbjct: 207  GAVVKGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPSEV------LQVGQEVEAK 259

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL  ++EK  + L ++   +   D  V ++    Q     G  + G+++ +     G  V
Sbjct: 260  VLKFDQEKSRVSLGVKQLGE---DPWVGLARRYPQ-----GTRLFGKVTNLTDY--GAFV 309

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++   + G VH +E+           +     DP      G+ V+  VLEI    R    
Sbjct: 310  EVEAGIEGLVHVSEMD----------WTNKNVDPRKVVTLGEEVEVMVLEIDEDRR---- 355

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
                 R SL GM     +    +  T  K  +K         V+G +K++T  G F+ L 
Sbjct: 356  -----RISL-GMKQCRQNPWE-EFATNFKRGDK---------VRGAIKSITDFGVFVGLP 399

Query: 1400 RKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
              +D  V LS+LS  + ES E   + F  G  +   VL ++   +R+ + +K  +     
Sbjct: 400  GGIDGLVHLSDLS--WTESGEEAVRNFKKGDELEAVVLGIDTDKERISLGIKQLEG---- 453

Query: 1457 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1488
                NN    H  G +V G IK VE  G  IT+
Sbjct: 454  -DPFNNFVATHDKGAVVPGTIKSVEPKGAVITL 485



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 162/411 (39%), Gaps = 68/411 (16%)

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            EF +++ LD + +N++LS +  L  S  ++       +H  +VV G V NI + G FV  
Sbjct: 168  EF-KVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVD- 225

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            LG + G    +     +    S+   VGQ V + +L  + E  R++L +KQ         
Sbjct: 226  LGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQ--------- 276

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                  L E+    L      G+ L             GKV    D+G  V  E   +  
Sbjct: 277  ------LGEDPWVGLARRYPQGTRLF------------GKVTNLTDYGAFVEVEAGIEGL 318

Query: 902  GFITHHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN-RQ 954
              ++        V+       G  ++  +L++ +  R + L +K    + + E  +N ++
Sbjct: 319  VHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKR 378

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQ-- 1012
              K +   ++  D GV                 + LP      G   +SD +  +  +  
Sbjct: 379  GDKVRGAIKSITDFGVF----------------VGLP--GGIDGLVHLSDLSWTESGEEA 420

Query: 1013 -KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
             + F  G  + A V+ + +     R+ L +K +     ++       +++D G++V   I
Sbjct: 421  VRNFKKGDELEAVVLGIDTDKE--RISLGIKQLEGDPFNNF-----VATHDKGAVVPGTI 473

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
              ++P    +   +   G +  +E++   S  VE+  +  K G+ + A I+
Sbjct: 474  KSVEPKGAVITLSVDVEGYLRASEIS---SGRVEDATTVLKAGENIEAMIV 521


>gi|93006497|ref|YP_580934.1| 30S ribosomal protein S1 [Psychrobacter cryohalolentis K5]
 gi|92394175|gb|ABE75450.1| SSU ribosomal protein S1P [Psychrobacter cryohalolentis K5]
          Length = 563

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 146/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G+ ++G V  +  +GA V   GG+  L  +  M+   I  P +  +VG +L  +VL 
Sbjct: 190 LEEGIEIEGIVKNLTDYGAFVDL-GGIDGLLHITDMAWRRIKHPSEVVEVGQDLKVKVLK 248

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+        +  +Y   +   +    +T +  +GCF     G++G  
Sbjct: 249 FDRERNRVSLGLKQLGTDPWDNVGGTYPVGS---VVKARVTNLTDYGCFAEISEGIEGLV 305

Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLG 670
             SE+   +    PS +  VG  V+  I+      RRI+L          +  D   + G
Sbjct: 306 HVSEMDHTNKNIHPSKVVQVGDEVEVMILDIDEERRRISLGIKQTLANPWDEFDKKHERG 365

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT---VMKSVIKPGYEFDQL 727
             ++G +  +T   + +     G   G     HL+D   + T    +++  K       +
Sbjct: 366 DKITGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNETGEDAIRNYNKGDTVEAMV 420

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-----PNSVVHGYVCNIIETGCFVRFL 782
           L +D+E++ + L  K        QL SD  + +       ++V+G V  +   G  +   
Sbjct: 421 LSVDSEANRISLGVK--------QLTSDPFNEYLVNNDRGAIVNGKVKEVDAKGATIELA 472

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +  +   S+    +  D +K   VG  V + I+ V+ +T  I+LS+K
Sbjct: 473 DEVEAYLRASEIQRDRVEDATKHLTVGDDVEAKIISVDRKTRNISLSIK 521



 Score = 41.6 bits (96), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 38/203 (18%)

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVN 820
           SVV   V N+ + GCF      + G    S+ +D    ++  SK   VG  V   ILD++
Sbjct: 279 SVVKARVTNLTDYGCFAEISEGIEGLVHVSE-MDHTNKNIHPSKVVQVGDEVEVMILDID 337

Query: 821 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
            E  RI+L +KQ+  +  D  F ++H    E+                      G  I G
Sbjct: 338 EERRRISLGIKQTLANPWD-EFDKKH----ER----------------------GDKITG 370

Query: 881 KVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 934
            +    DFG+ +  +       H     +    + A      G  ++A +L V      +
Sbjct: 371 TIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEDAIRNYNKGDTVEAMVLSVDSEANRI 430

Query: 935 DLSLKTVFIDRFRE--ANSNRQA 955
            L +K +  D F E   N++R A
Sbjct: 431 SLGVKQLTSDPFNEYLVNNDRGA 453



 Score = 40.0 bits (92), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEP 1438
            + G +K++T  G FI L   +D  V LS++S  + E+ E   + +  G  V   VLSV+ 
Sbjct: 368  ITGTIKSITDFGIFIGLDGGIDGLVHLSDIS--WNETGEDAIRNYNKGDTVEAMVLSVDS 425

Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             + R+ + +K   S   ++  +NN      G IV G++K V++ G  I +
Sbjct: 426  EANRISLGVKQLTSDPFNEYLVNN----DRGAIVNGKVKEVDAKGATIEL 471


>gi|373486910|ref|ZP_09577581.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
 gi|372010863|gb|EHP11466.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
          Length = 585

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 148/352 (42%), Gaps = 26/352 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T + ++ G +V+G V  +  +GA +   GGV  L  +  MS   +  P + F+VG ++  
Sbjct: 213 TLAGLEEGKLVEGTVKNITEYGAFIDL-GGVDGLLHITDMSWGRLNHPSEMFQVGDKVEV 271

Query: 552 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            +L     ++R+++ +K+      L +   +          G +  I  +G FV    GV
Sbjct: 272 AILKYDKDTERVSLGYKQKFADPWLTVEERFPMNAS---VKGKVVSITDYGAFVELEPGV 328

Query: 610 QGFAPRSELGLDPGCEPS-SMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDL 666
           +G    SE+      + +  M ++G +V+  I+     SRRI+L    + P    E  + 
Sbjct: 329 EGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMKQVTPNPWMEVAEK 388

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 721
             +G +V+G V  +T     V +      +G     H++D      ++H      V+K G
Sbjct: 389 YNIGQIVTGTVRNITEFGAFVEL-----EEGIDGLIHVSDFSWTKKIKHPG---EVVKKG 440

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                ++L LD  +  + L  K    N  +Q   D   +     V G +  + + G FV 
Sbjct: 441 DSVTAKVLNLDPLNQRMSLGVKQMEPNVWEQF-FDGHRV--GDTVTGKIARLTDFGAFVD 497

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               + G    S+    +  D+ K +   Q +   I+ ++    RI LS+KQ
Sbjct: 498 LGDGIEGLVHVSELSRKRVEDIQKEFTTAQELTMKIVKLDPTEHRIGLSVKQ 549



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 162/414 (39%), Gaps = 68/414 (16%)

Query: 721  GYEFD-QLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            G  +D +++ ++    N++LS K  +  IN++ +  + A  +    +V G V NI E G 
Sbjct: 177  GKSYDMKVIKVNRRRGNIVLSRKLFMETINASLKEETLAG-LEEGKLVEGTVKNITEYGA 235

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            F+  LG + G    +    G+    S+ + VG  V   IL  + +T R++L  KQ     
Sbjct: 236  FID-LGGVDGLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTERVSLGYKQK---- 290

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
                F      +EE+  M  S                   ++GKV    D+G  V  E  
Sbjct: 291  ----FADPWLTVEERFPMNAS-------------------VKGKVVSITDYGAFVELEPG 327

Query: 897  -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
                 H     +    + A   V  G +++A IL V    R + L +K V  + +     
Sbjct: 328  VEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMKQVTPNPW----- 382

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--- 1008
                       E ++   + Q V   V  + E    + L E     G   VSD++     
Sbjct: 383  ----------MEVAEKYNIGQIVTGTVRNITEFGAFVELEEGID--GLIHVSDFSWTKKI 430

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
            K P +    G SV A V+ L   +   R+ L +K     +   +   +    + VG  V 
Sbjct: 431  KHPGEVVKKGDSVTAKVLNLDPLNQ--RMSLGVK-----QMEPNVWEQFFDGHRVGDTVT 483

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +I  +      +  G G  G +H++E++  +   VE++   F   Q +T +I+
Sbjct: 484  GKIARLTDFGAFVDLGDGIEGLVHVSELSRKR---VEDIQKEFTTAQELTMKIV 534



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1423
            TP   +E  E  +   IV G V+N+T  G F+ L   +D  + +S+ S    ++ P +  
Sbjct: 378  TPNPWMEVAEKYNIGQIVTGTVRNITEFGAFVELEEGIDGLIHVSDFSWTKKIKHPGEVV 437

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
              G  V  +VL+++PL++R+ + +K  +     Q          VGD V G+I R+  +G
Sbjct: 438  KKGDSVTAKVLNLDPLNQRMSLGVKQMEPNVWEQF----FDGHRVGDTVTGKIARLTDFG 493

Query: 1484 LFITI 1488
             F+ +
Sbjct: 494  AFVDL 498



 Score = 43.5 bits (101), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 109/520 (20%), Positives = 194/520 (37%), Gaps = 95/520 (18%)

Query: 189 VGQLVSCIVLQLDD-------DKKEIGKRKIW----LSLRLSLLYKGLSLETVQEGMVLT 237
           VG +V  +V  L+D        ++   K KIW     + R ++   G+ LE V+ G+ + 
Sbjct: 93  VGDVVEVLVEHLEDVNGNVRLSRERAEKMKIWDEVEKAFRSNMTVHGVVLEKVKGGLAVD 152

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDR 289
             +++                 FLP       S +DVKP        G      V  ++R
Sbjct: 153 IGIRA-----------------FLP------GSQVDVKPVRNLDPYLGKSYDMKVIKVNR 189

Query: 290 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 349
            R  + LS       + +   LK  ++  L  G +V   V++I E G  +       G V
Sbjct: 190 RRGNIVLSRK--LFMETINASLKEETLAGLEEGKLVEGTVKNITEYGAFIDL-----GGV 242

Query: 350 D-IFHLQN-TFPTTNWKNDYNQ-HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAP 401
           D + H+ + ++   N  ++  Q   KV   IL  D  +  V L       +P+L      
Sbjct: 243 DGLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTERVSLGYKQKFADPWLTVEERF 302

Query: 402 PSHV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPV-----STPAYVTISDVAEEEVRK 452
           P +     KV  I D    V ++ G+  L+ +          S    V + D+ E  + +
Sbjct: 303 PMNASVKGKVVSITDYGAFVELEPGVEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQ 362

Query: 453 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
           ++ + +  S      LG + +                +        G +V G V  +  F
Sbjct: 363 VDVESRRIS------LGMKQV-----------TPNPWMEVAEKYNIGQIVTGTVRNITEF 405

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLGVK--SKRITVTHK 566
           GA V+   G+  L    H+S+F   K    PG+  K G  +  +VL +   ++R+++  K
Sbjct: 406 GAFVELEEGIDGLI---HVSDFSWTKKIKHPGEVVKKGDSVTAKVLNLDPLNQRMSLGVK 462

Query: 567 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           +            +          G I ++   G FV   +G++G    SEL      + 
Sbjct: 463 QMEPNVWEQFFDGHRVGD---TVTGKIARLTDFGAFVDLGDGIEGLVHVSELSRKRVEDI 519

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
              +   Q +  +I+   P   RI LS     T + + ++
Sbjct: 520 QKEFTTAQELTMKIVKLDPTEHRIGLSVKQYETDLEKGEM 559


>gi|170717701|ref|YP_001784774.1| 30S ribosomal protein S1 [Haemophilus somnus 2336]
 gi|168825830|gb|ACA31201.1| ribosomal protein S1 [Haemophilus somnus 2336]
          Length = 547

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 143/350 (40%), Gaps = 36/350 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++  G  VKG V  +  +GA V   GGV  L  +  M+   +  PG+   VG E+  +V
Sbjct: 187 ANLAEGSEVKGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPGEIVSVGDEITVKV 245

Query: 554 LGVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L     +  V+   K L +     ++       +L   G +T +  +GCFV    GV+G 
Sbjct: 246 LKFDKDKTRVSLGLKQLGQDPWVAIAENHPVNSKLT--GKVTNLTDYGCFVEILEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPT-RVSEDDLVKL 669
              SE+   +    PS + H+G VV+  ++      RRI+L     KP   +   +    
Sbjct: 304 VHVSEMDWTNKNIHPSKVVHLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNK 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 729
           G  VSG +  +T   + +     G   G     HL+D         S   PG E  +   
Sbjct: 364 GDKVSGKIKSITDFGIFI-----GLEGGIDGLVHLSDI--------SWNIPGEEAVRNYK 410

Query: 730 LDNESSNLLL---SAKYSLINSAQQLPSDA--SHIHPN---SVVHGYVCNIIETGCFVRF 781
             +E   ++L   SAK  +    +QL  D   + I  N   +VV   V  +   G  V  
Sbjct: 411 KGDEVEAVVLQVDSAKERISLGIKQLEEDPFNNFIAVNKKGAVVSAKVVEVDAKGAKVEL 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +  + G+         + ADLS    VG  V +    V+ ++  + LS+K
Sbjct: 471 VSGVEGYI--------RTADLSNEVVVGDVVEAKYTGVDRKSRIVHLSVK 512


>gi|407892607|ref|ZP_11151637.1| 30S ribosomal protein S1 [Diplorickettsia massiliensis 20B]
          Length = 528

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 147/349 (42%), Gaps = 28/349 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G V+KG V  +  +GA +   GG+  L  +  +S   +  P +   +G E    V
Sbjct: 187 AELEEGQVIKGIVKNLADYGAFIDL-GGIDGLLHVTDISWKRVKNPSEVLAIGDETEVLV 245

Query: 554 LGVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L ++ +R  V+   K L     A L        RL   G IT +  +GCFV    GV+G 
Sbjct: 246 LKIEKERGRVSLGLKQLAGDPWADLVKRYPVGTRL--KGKITNVTDYGCFVEVEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---DLVK 668
              SE+   +    P+ +  VG  ++  ++      RRI+L      +   ED   + +K
Sbjct: 304 VHVSEMDWTNKNINPNKIVQVGMEIEVVVLDIDLERRRISLGIKQCQSNPWEDFSNNHMK 363

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  + G +  +T   + +     G   G     HL+D   + +  ++V   K G E + 
Sbjct: 364 -GERIRGKLKSITDFGLFI-----GLPGGIDGLVHLSDIAWNMSGEEAVRKYKKGDELET 417

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQL----PSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           +++ +D E   + L  K   + S + +    P DA   H N  V   V  +      V  
Sbjct: 418 IILSIDPERERISLGIKQLELESDESVAKVDPFDA--YHENQWVRATVKEVTPERIHVEL 475

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
             ++      ++ +  +  D + T+ V Q + + IL ++    RI LSL
Sbjct: 476 SDQI-----EAELLSSELGDDAMTFTVDQEINARILTIDHHHRRIELSL 519



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +L    +++G VKN+   G FI L   +D  + ++++S   V++P +   IG      VL
Sbjct: 188  ELEEGQVIKGIVKNLADYGAFIDLG-GIDGLLHVTDISWKRVKNPSEVLAIGDETEVLVL 246

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +E    RV + LK    + A     + +    VG  + G+I  V  YG F+ +E
Sbjct: 247  KIEKERGRVSLGLK----QLAGDPWADLVKRYPVGTRLKGKITNVTDYGCFVEVE 297


>gi|330830010|ref|YP_004392962.1| 30S ribosomal subunit protein S1 [Aeromonas veronii B565]
 gi|406676711|ref|ZP_11083896.1| 30S ribosomal protein S1 [Aeromonas veronii AMC35]
 gi|423209287|ref|ZP_17195841.1| 30S ribosomal protein S1 [Aeromonas veronii AER397]
 gi|328805146|gb|AEB50345.1| 30S ribosomal subunit protein S1; site specific RNA helicase;
           component of the degradosome [Aeromonas veronii B565]
 gi|404617145|gb|EKB14081.1| 30S ribosomal protein S1 [Aeromonas veronii AER397]
 gi|404625025|gb|EKB21842.1| 30S ribosomal protein S1 [Aeromonas veronii AMC35]
          Length = 556

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLQEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKV 245

Query: 554 LGVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  V+   K+      +AI   Y E T RL   G +T +  +GCFV    GV+G
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPETT-RL--SGRVTNLTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    PS + +VG VV   ++      RRI+L        P ++  +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDVVDVMVLDIDEERRRISLGLKQCKSNPWQLFAETHA 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   +    ++V   K G E +
Sbjct: 363 K-GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  +D       ++V G V  +   G  +     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLADNK---KGAIVKGKVTEVDAKGAIIELADG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   S A   +  D +    VG  V +  + V+ +   ++LS++
Sbjct: 474 VEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520



 Score = 47.4 bits (111), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 16/193 (8%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           K++ ++    TH+    G  V GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KSNPWQLFAETHA---KGDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNNQGE 403

Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKI 596
              ++FK G E+   VL V  +R  ++     ++      + Y A+     I  G +T++
Sbjct: 404 EAVREFKKGDEIEAVVLQVDPERERISLGVKQIEEDP--FNKYLADNKKGAIVKGKVTEV 461

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           +  G  +   +GV+G+   S+   D   + + +  VG  V+ + M     +R ++LS   
Sbjct: 462 DAKGAIIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVRA 521

Query: 657 K---PTRVSEDDL 666
           K     RV+ D+L
Sbjct: 522 KDEADERVAIDNL 534



 Score = 40.0 bits (92), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 392 NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+ L    H +      K+  I D    + +D G+  L+ +          ++ ++  E
Sbjct: 352 NPWQLFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSD--------ISWNNQGE 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E VR+  KK  E   V +++   R    L    ++   F   +   +D K G +VKGKV 
Sbjct: 404 EAVREF-KKGDEIEAVVLQVDPERERISLGVKQIEEDPFNKYL---ADNKKGAIVKGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
            VD+ GAI++   GV+        +   +        VG E+  + +GV  K  TV+
Sbjct: 460 EVDAKGAIIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVS 516


>gi|312113691|ref|YP_004011287.1| 30S ribosomal protein S1 [Rhodomicrobium vannielii ATCC 17100]
 gi|311218820|gb|ADP70188.1| ribosomal protein S1 [Rhodomicrobium vannielii ATCC 17100]
          Length = 576

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 195/488 (39%), Gaps = 90/488 (18%)

Query: 487 EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EIVKPGKKFKV 545
           EG++F          VKG    VD  GA+   PG    + P+  ++    + +P      
Sbjct: 125 EGVIFNR--------VKGG-FTVDLDGAVAFLPGSQVDIRPIKDVTPLMNVPQP------ 169

Query: 546 GAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCF 602
                F++L +  +R  I V+ +  L +++    S   A+  +  +  G +  I  +G F
Sbjct: 170 -----FQILKMDRRRGNIVVSRRSVLEETRAEQRSEIVAKLEEGQVVDGVVKNITDYGAF 224

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPT 659
           +    G+ G    +++       P+ + +VG  VK +I+   P ++RI+L        P 
Sbjct: 225 IDL-GGIDGLLHVTDMAWKRVNHPTEILNVGDTVKVQIVRINPETQRISLGMKQLGSDPW 283

Query: 660 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
              E      G     V ++    A   +V  +   +G I       H+   + +K  + 
Sbjct: 284 SGIEAKYPIGGKFTGTVTNIADYGA---FVELEPGVEGLI-------HVSEMSWVKKNVH 333

Query: 720 PG------YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVC 770
           PG       E + Q+L +D     + L  K +     Q+ P +  +  HP  S V G V 
Sbjct: 334 PGKIVSTSQEVEVQVLEVDASKRRISLGLKQT-----QENPWNTFADTHPKGSEVEGQVR 388

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRA--DLSKTYYVGQSVRSNILDVNSETGRITL 828
           NI E G FV   G + G    S  +D  R+  +  K Y  G +VR+ +L+ + E  RI+L
Sbjct: 389 NITEFGLFVGLEGGIDGMVHLSD-LDWSRSGEEAIKEYNKGDTVRAVVLETDPEKERISL 447

Query: 829 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
            +KQ                        QS+    S LK       GS++  +V E  D 
Sbjct: 448 GIKQLATDP------------------FQSAS---STLK------KGSIVTCEVIEVKDA 480

Query: 889 GVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTV 941
           G+ V     +D+  FI    L+    E       +G ++ A +  V K  R + LS+K +
Sbjct: 481 GIDVKI-AGTDMTAFIRRADLSRDRSEQRPERFSAGDMVDAVVTQVDKGGRKIGLSIKAL 539

Query: 942 FIDRFREA 949
            I   +EA
Sbjct: 540 EIAEEKEA 547



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 141/339 (41%), Gaps = 64/339 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ V G V  + +  A + +   +   L + D A++    P+E+       ++G  V   
Sbjct: 208  GQVVDGVVKNITDYGAFIDLG-GIDGLLHVTDMAWKRVNHPTEI------LNVGDTVKVQ 260

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GL 1277
            ++ IN E + + L ++                +  + I     +GG+ +  ++ +   G 
Sbjct: 261  IVRINPETQRISLGMKQL------------GSDPWSGIEAKYPIGGKFTGTVTNIADYGA 308

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337
             V++ P + G +H +E+           + +    P       Q V+ +VLE+  + R  
Sbjct: 309  FVELEPGVEGLIHVSEMS----------WVKKNVHPGKIVSTSQEVEVQVLEVDASKR-- 356

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1397
                   R SL G+  T  +  +T  DT  K  E          V+G V+N+T  G F+ 
Sbjct: 357  -------RISL-GLKQTQENPWNTFADTHPKGSE----------VEGQVRNITEFGLFVG 398

Query: 1398 LSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            L   +D  V LS+L   +  S E   KE+  G  V   VL  +P  +R+ + +K    + 
Sbjct: 399  LEGGIDGMVHLSDLD--WSRSGEEAIKEYNKGDTVRAVVLETDPEKERISLGIK----QL 452

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
            A+    +  S L  G IV  ++  V+  G+ + I  T++
Sbjct: 453  ATDPFQSASSTLKKGSIVTCEVIEVKDAGIDVKIAGTDM 491


>gi|270291294|ref|ZP_06197516.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
 gi|270280140|gb|EFA25976.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
          Length = 403

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G VV GKV  + +FGA V   GG+  L  +  +S   + KP    K G E+  +V
Sbjct: 198 SSLQEGEVVTGKVARLTNFGAFVDL-GGIDGLVHISEISYERVEKPSDVLKPGEEVQVKV 256

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           L V  + +RI+++ K+T    +     + AE A    +  G + ++   G FV  + GV+
Sbjct: 257 LSVDPERERISLSIKQT----QPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVEVFPGVE 312

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           G    S++       P+ +   GQ +K +++   P  RR+ LS 
Sbjct: 313 GLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSI 356



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 174/411 (42%), Gaps = 48/411 (11%)

Query: 495 DVKPGMVVKGKVIAVDS-FGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +VK G VV G+V+ +D     IV   G GV+ + PL  +S   I     + K+G EL   
Sbjct: 21  EVKVGDVVTGEVLDIDDDRQVIVGIQGAGVEGVVPLRELSTQHIDNINDEVKIGDELELV 80

Query: 553 VLG-----VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           V+       +     ++ K+ L +     +   A   + L     +T++ K G  V    
Sbjct: 81  VISRIGDDKEGGSYLLSRKRLLARKVWKEIEEKAANGEELEVP--VTQVVKGGLVVDA-- 136

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDD 665
           GV+GF P S +  +   +  + Y  GQ +K +I+   P   R+ LS   ++   R  +  
Sbjct: 137 GVRGFIPASMIE-NRYVDDLNAYK-GQTLKVKIIEIKPEDNRLILSHKAVINAERAEKRQ 194

Query: 666 LV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 720
            V    + G +V+G V  +T     V +   G   G +   H+++   E       V+KP
Sbjct: 195 EVLSSLQEGEVVTGKVARLTNFGAFVDL---GGIDGLV---HISEISYERVEKPSDVLKP 248

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYS----LINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           G E   ++L +D E   + LS K +      N A++ P  A       V+ G V  + + 
Sbjct: 249 GEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGA-------VLDGKVKRLTDF 301

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G FV     + G    S+      A  +     GQ ++  +L+V+ E  R+ LS+K    
Sbjct: 302 GAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKA--- 358

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
                  ++E    E++ +   ++ ++    +   GF +G +I   + +S+
Sbjct: 359 -------LEEAPKSEKRASKAPATDYSKDMPEETTGFTLGDIIGDSLKDSD 402



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 106/252 (42%), Gaps = 45/252 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           +++ +  E + L+LS K ++IN+  A++     S +    VV G V  +   G FV  LG
Sbjct: 166 KIIEIKPEDNRLILSHK-AVINAERAEKRQEVLSSLQEGEVVTGKVARLTNFGAFVD-LG 223

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            + G    S+    +    S     G+ V+  +L V+ E  RI+LS+KQ+          
Sbjct: 224 GIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSVDPERERISLSIKQTQPGPW----- 278

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
                  E IA               E   +G+V++GKV    DFG  V  E    V G 
Sbjct: 279 -------ENIA---------------EKAPVGAVLDGKVKRLTDFGAFV--EVFPGVEGL 314

Query: 904 -----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
                I+H  +A     +E G  I+  +L+V   ER + LS+K        EA  + +  
Sbjct: 315 VHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKA-----LEEAPKSEKRA 369

Query: 957 KKKRKREASKDL 968
            K    + SKD+
Sbjct: 370 SKAPATDYSKDM 381



 Score = 47.0 bits (110), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 36/214 (16%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
            GGLVV  G  + G +  + ++N  V D            L+ Y +GQ +K K++EI    
Sbjct: 130  GGLVVDAG--VRGFIPASMIENRYVDD------------LNAY-KGQTLKVKIIEIKPE- 173

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                 + LS ++ ++   +              K  E +  L    +V G V  +T+ G 
Sbjct: 174  --DNRLILSHKAVINAERAE-------------KRQEVLSSLQEGEVVTGKVARLTNFGA 218

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ L   +D  V +S +S   VE P      G+ V  +VLSV+P  +R+ +++K    +T
Sbjct: 219  FVDLG-GIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSVDPERERISLSIK----QT 273

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                  N      VG ++ G++KR+  +G F+ +
Sbjct: 274  QPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVEV 307


>gi|406985209|gb|EKE06045.1| Ribosomal protein S1, partial [uncultured bacterium]
          Length = 211

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 19/207 (9%)

Query: 458 KEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           K G  + V++L + +  + ++ G+  L  + +E LV    ++K G  VKGK+ ++  +G 
Sbjct: 14  KIGEKITVKVLSYDKENDKISLGLKQLTPNPWEKLV---EELKVGSKVKGKISSITDYGL 70

Query: 515 IVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
            V+   GV+ L    H+SE      I    KKFKVG EL   ++ +  +++R++++ K+ 
Sbjct: 71  FVELKKGVEGLV---HISEVSWTDRITDLQKKFKVGDELEVLIVSLDPQNRRMSLSVKQ- 126

Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPS 627
           L K+    +S+  +A D++   G I+ I   G FV+   GV G    S+L  ++    PS
Sbjct: 127 LDKNPWESISTKFKAGDKI--SGTISNITDFGIFVQLVPGVDGLVHISDLSWIEHINHPS 184

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSF 654
            +Y  G +V   I+   P +++I+L  
Sbjct: 185 DIYKKGDLVDAVILGIEPENKKISLGI 211



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1423
            TP    + +E+L     V+G + ++T  G F+ L + ++  V +S +S    +   +K+F
Sbjct: 41   TPNPWEKLVEELKVGSKVKGKISSITDYGLFVELKKGVEGLVHISEVSWTDRITDLQKKF 100

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1483
             +G  +   ++S++P ++R+ +++K  D            +    GD + G I  +  +G
Sbjct: 101  KVGDELEVLIVSLDPQNRRMSLSVKQLDKNPWESIS----TKFKAGDKISGTISNITDFG 156

Query: 1484 LFITI 1488
            +F+ +
Sbjct: 157  IFVQL 161


>gi|304385043|ref|ZP_07367389.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
 gi|418069327|ref|ZP_12706605.1| 30S ribosomal protein S1 [Pediococcus acidilactici MA18/5M]
 gi|304329237|gb|EFL96457.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
 gi|357536796|gb|EHJ20824.1| 30S ribosomal protein S1 [Pediococcus acidilactici MA18/5M]
          Length = 403

 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G VV GKV  + +FGA V   GG+  L  +  +S   + KP    K G E+  +V
Sbjct: 198 SSLQEGEVVTGKVARLTNFGAFVDL-GGIDGLVHISEISYERVEKPSDVLKPGEEVQVKV 256

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           L V  + +RI+++ K+T    +     + AE A    +  G + ++   G FV  + GV+
Sbjct: 257 LSVDPERERISLSIKQT----QPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVEVFPGVE 312

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           G    S++       P+ +   GQ +K +++   P  RR+ LS 
Sbjct: 313 GLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSI 356



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 174/411 (42%), Gaps = 48/411 (11%)

Query: 495 DVKPGMVVKGKVIAVDS-FGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +VK G VV G+V+ +D     IV   G GV+ + PL  +S   I     + K+G EL   
Sbjct: 21  EVKVGDVVTGEVLDIDDDRQVIVGIQGAGVEGVVPLRELSTQHIDNINDEVKIGDELELV 80

Query: 553 VLG-----VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           V+       +     ++ K+ L +     +   A   + L     +T++ K G  V    
Sbjct: 81  VISRIGDDKEGGSYLLSRKRLLARKVWKEIEEKAANGEELEVP--VTQVVKGGLVVDA-- 136

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDD 665
           GV+GF P S +  +   +  + Y  GQ +K +I+   P   R+ LS   ++   R  +  
Sbjct: 137 GVRGFIPASMIE-NRYVDDLNAYK-GQTLKVKIIEIKPEDNRLILSHKAVINAERAEKRQ 194

Query: 666 LV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 720
            V    + G +V+G V  +T     V +   G   G +   H+++   E       V+KP
Sbjct: 195 EVLSSLQEGEVVTGKVARLTNFGAFVDL---GGIDGLV---HISEISYERVEKPSDVLKP 248

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYS----LINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           G E   ++L +D E   + LS K +      N A++ P  A       V+ G V  + + 
Sbjct: 249 GEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGA-------VLDGKVKRLTDF 301

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G FV     + G    S+      A  +     GQ ++  +L+V+ E  R+ LS+K    
Sbjct: 302 GAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKA--- 358

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
                  ++E    E+K +   ++ ++    +   GF +G +I   + +S+
Sbjct: 359 -------LEEAPKSEKKASKAPATDYSKDMPEETTGFTLGDIIGDSLKDSD 402



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 106/252 (42%), Gaps = 45/252 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           +++ +  E + L+LS K ++IN+  A++     S +    VV G V  +   G FV  LG
Sbjct: 166 KIIEIKPEDNRLILSHK-AVINAERAEKRQEVLSSLQEGEVVTGKVARLTNFGAFVD-LG 223

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            + G    S+    +    S     G+ V+  +L V+ E  RI+LS+KQ+          
Sbjct: 224 GIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSVDPERERISLSIKQTQPGPW----- 278

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
                  E IA               E   +G+V++GKV    DFG  V  E    V G 
Sbjct: 279 -------ENIA---------------EKAPVGAVLDGKVKRLTDFGAFV--EVFPGVEGL 314

Query: 904 -----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
                I+H  +A     +E G  I+  +L+V   ER + LS+K        EA  + +  
Sbjct: 315 VHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKA-----LEEAPKSEKKA 369

Query: 957 KKKRKREASKDL 968
            K    + SKD+
Sbjct: 370 SKAPATDYSKDM 381



 Score = 47.0 bits (110), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 36/214 (16%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
            GGLVV  G  + G +  + ++N  V D            L+ Y +GQ +K K++EI    
Sbjct: 130  GGLVVDAG--VRGFIPASMIENRYVDD------------LNAY-KGQTLKVKIIEIKPE- 173

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                 + LS ++ ++   +              K  E +  L    +V G V  +T+ G 
Sbjct: 174  --DNRLILSHKAVINAERAE-------------KRQEVLSSLQEGEVVTGKVARLTNFGA 218

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ L   +D  V +S +S   VE P      G+ V  +VLSV+P  +R+ +++K    +T
Sbjct: 219  FVDLG-GIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSVDPERERISLSIK----QT 273

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                  N      VG ++ G++KR+  +G F+ +
Sbjct: 274  QPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVEV 307


>gi|315122096|ref|YP_004062585.1| 30S ribosomal protein S1 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495498|gb|ADR52097.1| 30S ribosomal protein S1 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 576

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 42/357 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V++G V  +  +GA V   G V  L  +  ++   I  P K   VG ++  +++ 
Sbjct: 195 LEEGQVIEGIVKNITDYGAFVDLSG-VDGLLHVTDIAWHRIQHPSKVLSVGQQVKVQIIR 253

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH----GWITKIEKHGCFVRFYNGVQG 611
           +  +    TH+ +L   +L   + + +  DR +      G +T I  +G F+    G++G
Sbjct: 254 INQE----THRISLGMKQLE-KNPWDDIKDRYVEESKVTGVVTNITDYGAFIELEAGIEG 308

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLV 667
            A  SE+        PS +  VGQ V+  I+   P  +RI+L     ++ P +   +   
Sbjct: 309 LAHISEISWTKKNIHPSKILSVGQEVEVVILEINPVRKRISLGLKQALINPWKAFSESHP 368

Query: 668 KLGSLVSGVVDVVTPNAV----------VVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
             G+ V G +   T   +          +V++    +++   P E +        V+K++
Sbjct: 369 P-GTEVEGEIKNKTEFGLFIGLDDNLDGMVHLSDLDWNR---PGERVIGEYNKGDVVKAI 424

Query: 718 IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
           +         L +D E   + L  K  L  SA  +   AS +  N+VV   V  I E G 
Sbjct: 425 V---------LDVDIEKERISLGIK-QLSGSAPDIADSASALRKNTVVSCEVIAINEGGI 474

Query: 778 FVRFLGR--LTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSETGRITLSLK 831
            V  +    +T F  RS  +   RAD     +  GQ V + ++  + +  +++LS+K
Sbjct: 475 EVTLIDHEGITSFIRRSD-LSRDRADQDPGRFSKGQIVDARVVGTSRKDNKVSLSIK 530



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 189/469 (40%), Gaps = 63/469 (13%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F+  D+    V KG V++++    IV    G+K    +P + EF         KVG E+ 
Sbjct: 19  FSKKDLAENCVSKGIVVSLEK--DIVVVDAGLKFEGRIP-LKEFMGKGQEATIKVGDEVE 75

Query: 551 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             +  +++       +  K L +     + +   A +R+   G I    K G  V   NG
Sbjct: 76  VYIERIENSFGEAVFSRDKALREGVWEKIEAKFAAGERI--EGVIFNQVKGGLTVDL-NG 132

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSED 664
              F PRS++ + P  + + + H  Q+ +   M     +I  SRR  L       R    
Sbjct: 133 EIAFLPRSQIDVRPIRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVLEESRAEQRSEIV 192

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYE 723
             ++ G ++ G+V  +T      +V   G   G +    +A H ++H + + SV   G +
Sbjct: 193 QKLEEGQVIEGIVKNITDYG--AFVDLSGVD-GLLHVTDIAWHRIQHPSKVLSV---GQQ 246

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              Q++ ++ E+  + L  K    N    +          S V G V NI + G F+   
Sbjct: 247 VKVQIIRINQETHRISLGMKQLEKNPWDDIK---DRYVEESKVTGVVTNITDYGAFIELE 303

Query: 783 GRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
             + G A  S+ +   + ++  SK   VGQ V   IL++N    RI+L LKQ+  +   A
Sbjct: 304 AGIEGLAHISE-ISWTKKNIHPSKILSVGQEVEVVILEINPVRKRISLGLKQALINPWKA 362

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            F + H                            G+ +EG++    +FG+ +  +++ D 
Sbjct: 363 -FSESHPP--------------------------GTEVEGEIKNKTEFGLFIGLDDNLD- 394

Query: 901 YGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTV 941
            G +    L     G  V      G V++A +LDV   +  + L +K +
Sbjct: 395 -GMVHLSDLDWNRPGERVIGEYNKGDVVKAIVLDVDIEKERISLGIKQL 442



 Score = 48.5 bits (114), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 92/441 (20%), Positives = 170/441 (38%), Gaps = 69/441 (15%)

Query: 726  QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            ++L +D    N+++S +  L  S A+Q       +    V+ G V NI + G FV   G 
Sbjct: 161  EILKMDKRRGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGIVKNITDYGAFVDLSG- 219

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    +     +    SK   VGQ V+  I+ +N ET RI+L +KQ   +  D   ++
Sbjct: 220  VDGLLHVTDIAWHRIQHPSKVLSVGQQVKVQIIRINQETHRISLGMKQLEKNPWDD--IK 277

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            + ++ E K+                          G V    D+G  +  E   +    I
Sbjct: 278  DRYVEESKVT-------------------------GVVTNITDYGAFIELEAGIEGLAHI 312

Query: 905  THHQLAGATVES------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            +        +        G  ++  IL++    + + L LK   I+ ++  + +     +
Sbjct: 313  SEISWTKKNIHPSKILSVGQEVEVVILEINPVRKRISLGLKQALINPWKAFSESHPPGTE 372

Query: 959  -----KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 1013
                 K K E    +G+   ++ +V         LS  ++N   G   + +YN       
Sbjct: 373  VEGEIKNKTEFGLFIGLDDNLDGMVH--------LSDLDWNRP-GERVIGEYN------- 416

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
                G  V A V+ +       R+ L +K +S    S+   A   S+    ++V  E+  
Sbjct: 417  ---KGDVVKAIVLDVDIEKE--RISLGIKQLS---GSAPDIADSASALRKNTVVSCEVIA 468

Query: 1074 IKP--LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
            I    +E+ L    G    I  ++++ D+++     FS    GQ V AR++  S K +  
Sbjct: 469  INEGGIEVTLIDHEGITSFIRRSDLSRDRADQDPGRFSK---GQIVDARVVGTSRKDNKV 525

Query: 1132 KSFLWELSIKPSMLTVSEIGS 1152
               +  L I      +++ GS
Sbjct: 526  SLSIKALEIAEERGAIAQFGS 546



 Score = 40.8 bits (94), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E ++ L    +++G VKN+T  G F+ LS  +D  + +++++   ++ P K   +G+ V 
Sbjct: 190  EIVQKLEEGQVIEGIVKNITDYGAFVDLS-GVDGLLHVTDIAWHRIQHPSKVLSVGQQVK 248

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI-VIGQIKRVESYGLFITIE 1489
             +++ +   + R+ + +K  +     ++  +++ + +V +  V G +  +  YG FI +E
Sbjct: 249  VQIIRINQETHRISLGMKQLE-----KNPWDDIKDRYVEESKVTGVVTNITDYGAFIELE 303


>gi|300023832|ref|YP_003756443.1| 30S ribosomal protein S1 [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525653|gb|ADJ24122.1| ribosomal protein S1 [Hyphomicrobium denitrificans ATCC 51888]
          Length = 572

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 147/352 (41%), Gaps = 50/352 (14%)

Query: 509 VDSFGAIVQFPGG------VKALCPLPHMSE-FEIVKPGKKFKVGAELVFRVLGVKSKRI 561
           VD  GA+   PG       V+ + PL H  + F+I+K  ++         R   V S+R 
Sbjct: 133 VDLDGAVAFLPGSQVDIRPVRDIGPLMHQQQPFQILKMDRR---------RGNIVVSRRS 183

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
            +   +   + +  I++  AE     I  G +  I  +G F+    G+ G    +++   
Sbjct: 184 VLEESRA--EQRTEIVARLAEGQ---IIDGLVKNITDYGAFIDL-GGIDGLLHVTDMAWR 237

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDV 679
               PS + +VG  VK +I+   P ++RI+L    +      S +    +G+ V G V  
Sbjct: 238 RVNHPSEILNVGDTVKVQIIRINPETQRISLGMKQLQSDPWSSIEAKYPVGARVKGTVTN 297

Query: 680 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-------QLLVLDN 732
           +       +V  +   +G I       H+   +  K    PG           Q+L +D 
Sbjct: 298 IADYGA--FVELEPGVEGLI-------HVSEMSWTKKNTHPGKIVSTSQQVEVQVLEVDP 348

Query: 733 ESSNLLLSAKYSLINSAQQLPSDAS-HIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
           +   + L  K +     Q+ P D     HP  S+V G + NI E G F+     + G   
Sbjct: 349 QKRRISLGLKQT-----QENPWDGFLTAHPKGSIVEGPIRNITEFGLFIGLDNGIDGMVH 403

Query: 791 RSKAVDGQRA--DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            S  +D Q+A  ++ K Y  G +V++ +LDV+    RI+L +KQ      DA
Sbjct: 404 LSD-LDWQKAGDEVIKDYKKGDNVKAIVLDVDGAKERISLGIKQLAGDPADA 454



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 138/614 (22%), Positives = 236/614 (38%), Gaps = 108/614 (17%)

Query: 491  FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI------VKPGKKFK 544
                D+  G VVKGK++ ++   AI+    G+K    +  M EF I      +K G   +
Sbjct: 24   LAKDDLFEGSVVKGKIVGIEKDMAIIDV--GLKMEGRVA-MKEFGIGGKPGDLKVGDTVE 80

Query: 545  VGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
            V  E V   LG       ++  K   +     L    E  ++ +T     K++  G F  
Sbjct: 81   VYLERVENALG----EAVLSRDKARREESWTRLERLYEKGEK-VTGVIFNKVK--GGFTV 133

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTR 660
              +G   F P S++ + P  +   + H  Q  +     R   +I  SRR  L       R
Sbjct: 134  DLDGAVAFLPGSQVDIRPVRDIGPLMHQQQPFQILKMDRRRGNIVVSRRSVLEESRAEQR 193

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--KSVI 718
                  +  G ++ G+V  +T     + +       G I      D L H T M  + V 
Sbjct: 194  TEIVARLAEGQIIDGLVKNITDYGAFIDL-------GGI------DGLLHVTDMAWRRVN 240

Query: 719  KPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP----NSVVH 766
             P    +       Q++ ++ E+  + L  K        QL SD  S I       + V 
Sbjct: 241  HPSEILNVGDTVKVQIIRINPETQRISLGMK--------QLQSDPWSSIEAKYPVGARVK 292

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V NI + G FV     + G    S+ +   +     K     Q V   +L+V+ +  R
Sbjct: 293  GTVTNIADYGAFVELEPGVEGLIHVSEMSWTKKNTHPGKIVSTSQQVEVQVLEVDPQKRR 352

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            I+L LKQ+  +  D  F+  H                            GS++EG +   
Sbjct: 353  ISLGLKQTQENPWDG-FLTAHPK--------------------------GSIVEGPIRNI 385

Query: 886  NDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLK 939
             +FG+ +  +   D  V+      Q AG  V    + G  ++A +LDV  A+  + L +K
Sbjct: 386  TEFGLFIGLDNGIDGMVHLSDLDWQKAGDEVIKDYKKGDNVKAIVLDVDGAKERISLGIK 445

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
             +       A     A  K +K +A     V  TV ++ E   E  +  S  E    +  
Sbjct: 446  QL-------AGDPADAMAKYKKGDA-----VTCTVTSVSEAGIEVKIADS--ELTSFVKR 491

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKK 1057
              +S   +++ P++ F  G  V A V+++     A R+ + +KA  ++E + + ++    
Sbjct: 492  GDLSRDRSEQRPER-FNVGDKVDAAVISV--DKAARRIAVSVKALELAEEKQAVAQYGSS 548

Query: 1058 KSSYDVGSLVQAEI 1071
             S   +G + +A I
Sbjct: 549  DSGASLGDIFKAAI 562



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            +  E +  L+   I+ G VKN+T  G FI L   +D  + +++++   V  P +   +G 
Sbjct: 192  QRTEIVARLAEGQIIDGLVKNITDYGAFIDLG-GIDGLLHVTDMAWRRVNHPSEILNVGD 250

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  +++ + P ++R+ + +K   S   S  E    +   VG  V G +  +  YG F+ 
Sbjct: 251  TVKVQIIRINPETQRISLGMKQLQSDPWSSIE----AKYPVGARVKGTVTNIADYGAFVE 306

Query: 1488 IE 1489
            +E
Sbjct: 307  LE 308


>gi|218133764|ref|ZP_03462568.1| hypothetical protein BACPEC_01633 [[Bacteroides] pectinophilus ATCC
           43243]
 gi|217991139|gb|EEC57145.1| putative ribosomal protein S1 [[Bacteroides] pectinophilus ATCC
           43243]
          Length = 365

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 23/341 (6%)

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
           G +V   V S+ E+ ++L+      G +      N  P  + +   ++   + A++L V+
Sbjct: 20  GEVVDGTVISVKEDEIVLNIGYKADGIITRSEYTNK-PNVDLRTVVSEGDTMKAKVLKVN 78

Query: 382 PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVV--RVDRGL--GLLLDIPSTPVSTP 437
                V LT    +    A   + K+ + Y+  +V+  +VD+ +  GL + I    V  P
Sbjct: 79  DGDGQVLLTYRRLV----AEEGNKKLEEAYNNKEVITAKVDKAIPGGLSVVIDEARVFIP 134

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLEGLATGILKASAFEGLVFTH 493
           A + ISD  E+++ K E     G  V   I  +    R + G    ++ A   E      
Sbjct: 135 ASL-ISDTYEKDLTKFE-----GQEVSFVITEYNPKKRRIIGDCKQLILAKKAEQAEKLL 188

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + +K G  ++G V  V  FGA +   GGV  L  +  MS      P K FKVG  +   V
Sbjct: 189 ASIKEGDTIEGTVKNVTDFGAFIDL-GGVDGLLHISEMSWGRTENPKKVFKVGDSVKAFV 247

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
             +   +I ++ K             YA      +  G + ++   G FV    GV    
Sbjct: 248 KEINGSKIALSLKYPDQNPWTDAPEKYAVGN---VVKGKVARMTDFGAFVELETGVDALL 304

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++ L+   +PS +  +GQ ++ +++      ++I+LS 
Sbjct: 305 HVSQIALEHVDKPSDVLKIGQEIEAKVVDLNVEEKKISLSI 345



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 137/322 (42%), Gaps = 69/322 (21%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--VDISNDNMQTFIHEG 1260
            L+E  +  H G+ V G V+S+ +++ +L +  +   DGI  ++   +  N +++T + EG
Sbjct: 10   LEESFKTIHTGEVVDGTVISVKEDEIVLNIGYKA--DGIITRSEYTNKPNVDLRTVVSEG 67

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320
            D +  ++ K+  G             G+V  T  + +         +EG       Y+  
Sbjct: 68   DTMKAKVLKVNDG------------DGQVLLTYRRLVA--------EEGNKKLEEAYNNK 107

Query: 1321 QFVKCKVLEISRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS-----------TDVD 1364
            + +  KV    + + G   V +      + +SL  +S T   DL+           T+ +
Sbjct: 108  EVITAKV---DKAIPGGLSVVIDEARVFIPASL--ISDTYEKDLTKFEGQEVSFVITEYN 162

Query: 1365 TP-------------GKHLEKIEDLSPNM----IVQGYVKNVTSKGCFIMLSRKLDAKVL 1407
                            K  E+ E L  ++     ++G VKNVT  G FI L   +D  + 
Sbjct: 163  PKKRRIIGDCKQLILAKKAEQAEKLLASIKEGDTIEGTVKNVTDFGAFIDLG-GVDGLLH 221

Query: 1408 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1467
            +S +S G  E+P+K F +G  V   V  +     ++ ++LK  D    + +         
Sbjct: 222  ISEMSWGRTENPKKVFKVGDSVKAFVKEIN--GSKIALSLKYPDQNPWTDAP----EKYA 275

Query: 1468 VGDIVIGQIKRVESYGLFITIE 1489
            VG++V G++ R+  +G F+ +E
Sbjct: 276  VGNVVKGKVARMTDFGAFVELE 297



 Score = 43.5 bits (101), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGV 556
           G VVKGKV  +  FGA V+   GV AL  +  ++   + KP    K+G E+  +V  L V
Sbjct: 277 GNVVKGKVARMTDFGAFVELETGVDALLHVSQIALEHVDKPSDVLKIGQEIEAKVVDLNV 336

Query: 557 KSKRITVTHKKTL 569
           + K+I+++ K  L
Sbjct: 337 EEKKISLSIKALL 349


>gi|427439251|ref|ZP_18923993.1| 30S ribosomal protein S1 [Pediococcus lolii NGRI 0510Q]
 gi|425788629|dbj|GAC44781.1| 30S ribosomal protein S1 [Pediococcus lolii NGRI 0510Q]
          Length = 403

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G VV GKV  + +FGA V   GG+  L  +  +S   + KP    K G E+  +V
Sbjct: 198 SSLQEGEVVTGKVARLTNFGAFVDL-GGIDGLVHISEISYERVEKPSDVLKPGEEVQVKV 256

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           L V  + +RI+++ K+T    +     + AE A    +  G + ++   G FV  + GV+
Sbjct: 257 LSVDPERERISLSIKQT----QPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVEVFPGVE 312

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           G    S++       P+ +   GQ +K +++   P  RR+ LS 
Sbjct: 313 GLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSI 356



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 175/411 (42%), Gaps = 48/411 (11%)

Query: 495 DVKPGMVVKGKVIAVDS-FGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +VK G VV G+V+ +D     IV   G GV+ + PL  +S   I     + K+G EL   
Sbjct: 21  EVKVGDVVTGEVLDIDDDRQVIVGIQGAGVEGVVPLRELSTQHIDNINDEVKIGDELELV 80

Query: 553 VLG-----VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           V+       +     ++ K+ L +     +   A   + L     +T++ K G  V    
Sbjct: 81  VISRIGDDKEGGSYLLSRKRLLARKVWKEIEEKAANGEELEVP--VTQVVKGGLVVDA-- 136

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDD 665
           GV+GF P S +  +   +  + Y  GQ +K +I+   P   R+ LS   ++   R  +  
Sbjct: 137 GVRGFIPASMIE-NRYVDDLNAYK-GQTLKVKIIEIKPEDNRLILSHKAVINAERAEKRQ 194

Query: 666 LV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 720
            V    + G +V+G V  +T     V +   G   G +   H+++   E       V+KP
Sbjct: 195 EVLSSLQEGEVVTGKVARLTNFGAFVDL---GGIDGLV---HISEISYERVEKPSDVLKP 248

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYS----LINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           G E   ++L +D E   + LS K +      N A++ P  A       V+ G V  + + 
Sbjct: 249 GEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGA-------VLDGKVKRLTDF 301

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G FV     + G    S+      A  +     GQ ++  +L+V+ E  R+ LS+K    
Sbjct: 302 GAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKA--- 358

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
                  ++E    E+K++   ++ ++    +   GF +G +I   + +S+
Sbjct: 359 -------LEEAPKSEKKVSKAPATDYSKDMPEETTGFTLGDIIGDSLKDSD 402



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 106/252 (42%), Gaps = 45/252 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           +++ +  E + L+LS K ++IN+  A++     S +    VV G V  +   G FV  LG
Sbjct: 166 KIIEIKPEDNRLILSHK-AVINAERAEKRQEVLSSLQEGEVVTGKVARLTNFGAFVD-LG 223

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            + G    S+    +    S     G+ V+  +L V+ E  RI+LS+KQ+          
Sbjct: 224 GIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSVDPERERISLSIKQTQPGPW----- 278

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
                  E IA               E   +G+V++GKV    DFG  V  E    V G 
Sbjct: 279 -------ENIA---------------EKAPVGAVLDGKVKRLTDFGAFV--EVFPGVEGL 314

Query: 904 -----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
                I+H  +A     +E G  I+  +L+V   ER + LS+K        EA  + +  
Sbjct: 315 VHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKA-----LEEAPKSEKKV 369

Query: 957 KKKRKREASKDL 968
            K    + SKD+
Sbjct: 370 SKAPATDYSKDM 381



 Score = 47.0 bits (110), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 36/214 (16%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1334
            GGLVV  G  + G +  + ++N  V D            L+ Y +GQ +K K++EI    
Sbjct: 130  GGLVVDAG--VRGFIPASMIENRYVDD------------LNAY-KGQTLKVKIIEIKPE- 173

Query: 1335 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1394
                 + LS ++ ++   +              K  E +  L    +V G V  +T+ G 
Sbjct: 174  --DNRLILSHKAVINAERAE-------------KRQEVLSSLQEGEVVTGKVARLTNFGA 218

Query: 1395 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454
            F+ L   +D  V +S +S   VE P      G+ V  +VLSV+P  +R+ +++K    +T
Sbjct: 219  FVDLG-GIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSVDPERERISLSIK----QT 273

Query: 1455 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
                  N      VG ++ G++KR+  +G F+ +
Sbjct: 274  QPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVEV 307


>gi|71066049|ref|YP_264776.1| 30S ribosomal protein S1 [Psychrobacter arcticus 273-4]
 gi|71039034|gb|AAZ19342.1| SSU ribosomal protein S1P [Psychrobacter arcticus 273-4]
          Length = 563

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 146/349 (41%), Gaps = 30/349 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G+ ++G V  +  +GA V   GG+  L  +  M+   I  P +  +VG +L  +VL 
Sbjct: 190 LEEGIEIEGIVKNLTDYGAFVDL-GGIDGLLHITDMAWRRIKHPSEVVEVGQDLKVKVLK 248

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+        +  +Y   +   +    +T +  +GCF     G++G  
Sbjct: 249 FDRERNRVSLGLKQLGTDPWDNVGGTYPVGS---VVKARVTNLTDYGCFAEISEGIEGLV 305

Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLG 670
             SE+   +    PS +  VG  V+  I+      RRI+L          +  D   + G
Sbjct: 306 HVSEMDHTNKNIHPSKVVQVGDEVEVMILDIDEERRRISLGIKQTLANPWDEFDKKHERG 365

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT---VMKSVIKPGYEFDQL 727
             ++G +  +T   + +     G   G     HL+D   + T    +++  K       +
Sbjct: 366 DKITGTIKSITDFGIFI-----GLDGGIDGLVHLSDISWNETGEDAIRNYNKGDTVEAMV 420

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-----PNSVVHGYVCNIIETGCFVRFL 782
           L +D+E++ + L  K        QL SD  + +       ++V+G V  +   G  +   
Sbjct: 421 LSVDSEANRISLGVK--------QLTSDPFNEYLVNNDRGAIVNGKVKEVDAKGATIELA 472

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +  +   S+    +  D +K   VG  V + I+ V+ +T  I+LS+K
Sbjct: 473 DEVEAYLRASEIQRDRVEDATKHLTVGDDVEAKIISVDRKTRNISLSIK 521



 Score = 41.6 bits (96), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 38/203 (18%)

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVN 820
           SVV   V N+ + GCF      + G    S+ +D    ++  SK   VG  V   ILD++
Sbjct: 279 SVVKARVTNLTDYGCFAEISEGIEGLVHVSE-MDHTNKNIHPSKVVQVGDEVEVMILDID 337

Query: 821 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
            E  RI+L +KQ+  +  D  F ++H    E+                      G  I G
Sbjct: 338 EERRRISLGIKQTLANPWD-EFDKKH----ER----------------------GDKITG 370

Query: 881 KVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 934
            +    DFG+ +  +       H     +    + A      G  ++A +L V      +
Sbjct: 371 TIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEDAIRNYNKGDTVEAMVLSVDSEANRI 430

Query: 935 DLSLKTVFIDRFRE--ANSNRQA 955
            L +K +  D F E   N++R A
Sbjct: 431 SLGVKQLTSDPFNEYLVNNDRGA 453


>gi|438000073|ref|YP_007183806.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium blastocrithidii (ex Strigomonas
           culicis)]
 gi|451813003|ref|YP_007449456.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium blastocrithidii TCC012E]
 gi|429339307|gb|AFZ83729.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium blastocrithidii (ex Strigomonas
           culicis)]
 gi|451778972|gb|AGF49852.1| small subunit ribosomal protein S1 [Candidatus
           Kinetoplastibacterium blastocrithidii TCC012E]
          Length = 570

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 152/360 (42%), Gaps = 20/360 (5%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+AS  E       ++  G +VKG V  +  +GA +   GG+  L  +  M+   +  P
Sbjct: 182 VLEASMGEERQKLLENLYEGAIVKGVVKNITDYGAFIDL-GGIDGLLHITDMAWRRVRHP 240

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +V  E+  +VL    +  R+++  K+      + +   Y + T      G IT + 
Sbjct: 241 SEVLQVCQEIEAKVLKFDQEKNRVSLGVKQLGEDPWVDLARRYPQGTHLF---GKITNLT 297

Query: 598 KHGCFVRFYNGVQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-M 655
            +G FV    G++G    SE+   +   +P  +  +G+ V+  ++      RRI+L    
Sbjct: 298 DYGAFVEVELGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQ 357

Query: 656 MKPTRVSEDDL-VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
            +P    E  +  K G  V G +  +T   V V     G   G     HL+D        
Sbjct: 358 CRPNPWEEFAVNFKKGDKVKGAIKSITDFGVFV-----GLPGGIDGLVHLSDLSWTDNGE 412

Query: 715 KSV--IKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
           +SV  +K G E + +++ +D     + L  K    +  Q   S  SH    S VHG V +
Sbjct: 413 ESVRNLKKGDEIEAVVLGIDTAKERISLGVKQLEGDPFQNFVS--SH-DKGSTVHGTVKS 469

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +   G  V     + G+   S+   G+  D +     G  + + I++++ +T  I LS+K
Sbjct: 470 VEPKGAIVNLSLDVDGYLRSSEISSGRVEDATSILKSGDPIEALIVNIDRKTRSIQLSVK 529


>gi|225174807|ref|ZP_03728804.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169447|gb|EEG78244.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 678

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++PG ++KG V  + +FGA V   GG+  L  +  +S   I  PG+   VG E+  +V
Sbjct: 476 AELEPGQIIKGTVKRLTNFGAFVDV-GGIDGLVHISEISWHRIDNPGEVLSVGDEIEVKV 534

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + V  + +RI ++ ++        +   ++ A D  +  G +T+I   G FV    GV+G
Sbjct: 535 IEVIPERERIGLSLRQAQPDPWTEVGQKFS-AGD--VVEGKVTRIVDFGAFVELIPGVEG 591

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S+L      +PS +   G VVK +I+      +R++LS 
Sbjct: 592 LVHISQLANYHVKQPSEVVQQGDVVKVKILDINTDGKRVSLSM 634



 Score = 47.0 bits (110), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +L P  I++G VK +T+ G F+ +   +D  V +S +S   +++P +   +G  +  +V+
Sbjct: 477  ELEPGQIIKGTVKRLTNFGAFVDVG-GIDGLVHISEISWHRIDNPGEVLSVGDEIEVKVI 535

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             V P  +R+ ++L+ +  +    +E+        GD+V G++ R+  +G F+ +
Sbjct: 536  EVIPERERIGLSLRQA--QPDPWTEVGQ--KFSAGDVVEGKVTRIVDFGAFVEL 585



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 22/167 (13%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCP--------LPHMSEFEIVKPGKKFKVGAELV 550
           G ++ GKV      G +V+  GG  A  P        +P  +EF+          G E+ 
Sbjct: 393 GTILSGKVKEAVPAGLVVELGGGYDAFMPGSLVDVRYIPDFNEFQ----------GQEIS 442

Query: 551 FRVLGVK-SKRITVTHKKTLVKSKLAILSS--YAEATDRLITHGWITKIEKHGCFVRFYN 607
           F+++ ++  K   +  +K +++ + A+      AE     I  G + ++   G FV    
Sbjct: 443 FKIIEMRPEKEKLILSRKQVLEEEAAVQKDKVLAELEPGQIIKGTVKRLTNFGAFVDV-G 501

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           G+ G    SE+       P  +  VG  ++ +++  IP   RI LS 
Sbjct: 502 GIDGLVHISEISWHRIDNPGEVLSVGDEIEVKVIEVIPERERIGLSL 548


>gi|420145960|ref|ZP_14653404.1| Ribosomal protein S1 [Lactobacillus coryniformis subsp.
           coryniformis CECT 5711]
 gi|398402349|gb|EJN55700.1| Ribosomal protein S1 [Lactobacillus coryniformis subsp.
           coryniformis CECT 5711]
          Length = 416

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 6/178 (3%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            I++A   E      + +K G  V+G V  + SFGA V   GG+  L  +  +S   + K
Sbjct: 186 AIVEAEKAEQREHVLATLKAGDTVEGTVARLTSFGAFVDL-GGIDGLVHVSEISFDRVEK 244

Query: 539 PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P    KVG ++  +VL V +  +RI+++ K TL +    I       +   +  G + ++
Sbjct: 245 PSDVLKVGQKITVKVLSVDADRERISLSIKATLPEPWTDIEEKAPAGS---VLEGTVKRL 301

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              G FV  + GV+G    S++       P+ +   G+ VK +++   P + R+ LS 
Sbjct: 302 TTFGAFVEVFPGVEGLVHISQISHQHIATPNEVLSEGEDVKVKVLEVNPEAHRLALSI 359



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 136/350 (38%), Gaps = 55/350 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL   P  + + +  VG V+   ++S+I   +  N S+++   R+      
Sbjct: 52  GVEGVVPVKELASQPVADINEVAKVGDVLDLVVISTIGKDKE-NGSYLLSKRRLEARKVW 110

Query: 664 ---DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               D    G  ++  V  V    +VV    +G+   ++  +H  D L            
Sbjct: 111 SEIQDKFNAGENITAPVTEVVKGGLVVDAGVRGFVPASMIQDHFVDDLNAYK-------- 162

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
           G E +  ++    S N L+ +  +++ +  A+Q     + +     V G V  +   G F
Sbjct: 163 GKELELKIIEIEPSENRLILSHRAIVEAEKAEQREHVLATLKAGDTVEGTVARLTSFGAF 222

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+    +    S    VGQ +   +L V+++  RI+LS+K       
Sbjct: 223 VD-LGGIDGLVHVSEISFDRVEKPSDVLKVGQKITVKVLSVDADRERISLSIK------- 274

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            A+  +    +EEK                      GSV+EG V     FG  V  E   
Sbjct: 275 -ATLPEPWTDIEEKAPA-------------------GSVLEGTVKRLTTFGAFV--EVFP 312

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V G      I+H  +A     +  G  ++  +L+V      + LS+K +
Sbjct: 313 GVEGLVHISQISHQHIATPNEVLSEGEDVKVKVLEVNPEAHRLALSIKAL 362



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 153/352 (43%), Gaps = 30/352 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGA-IVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           DVK G +VKG+++A+D     IV   G GV+ + P+  ++   +    +  KVG  L   
Sbjct: 24  DVKVGDIVKGEILAIDDDKQLIVGIQGTGVEGVVPVKELASQPVADINEVAKVGDVLDLV 83

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKHGCFVRFYN 607
           V+    K         L K +L     ++E  D+      IT   +T++ K G  V    
Sbjct: 84  VISTIGKD-KENGSYLLSKRRLEARKVWSEIQDKFNAGENIT-APVTEVVKGGLVVDA-- 139

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDD 665
           GV+GF P S +  D   +  + Y  G+ ++ +I+   P+  R+ LS   +++  +  + +
Sbjct: 140 GVRGFVPASMI-QDHFVDDLNAYK-GKELELKIIEIEPSENRLILSHRAIVEAEKAEQRE 197

Query: 666 LV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 720
            V    K G  V G V  +T     V +   G   G +    ++ D +E  +    V+K 
Sbjct: 198 HVLATLKAGDTVEGTVARLTSFGAFVDL---GGIDGLVHVSEISFDRVEKPS---DVLKV 251

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++L +D +   + LS K +L      +   A      SV+ G V  +   G FV
Sbjct: 252 GQKITVKVLSVDADRERISLSIKATLPEPWTDIEEKAP---AGSVLEGTVKRLTTFGAFV 308

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                + G    S+      A  ++    G+ V+  +L+VN E  R+ LS+K
Sbjct: 309 EVFPGVEGLVHISQISHQHIATPNEVLSEGEDVKVKVLEVNPEAHRLALSIK 360



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G V  +TS G F+ L   +D  V +S +S   VE P     +G+ +  +VLSV+   +
Sbjct: 209  VEGTVARLTSFGAFVDLG-GIDGLVHVSEISFDRVEKPSDVLKVGQKITVKVLSVDADRE 267

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ +++K +     +  E         G ++ G +KR+ ++G F+ +
Sbjct: 268  RISLSIKATLPEPWTDIE----EKAPAGSVLEGTVKRLTTFGAFVEV 310


>gi|420401450|ref|ZP_14900645.1| ribosomal protein S1 [Helicobacter pylori CPY6081]
 gi|393019561|gb|EJB20703.1| ribosomal protein S1 [Helicobacter pylori CPY6081]
          Length = 552

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 160/400 (40%), Gaps = 62/400 (15%)

Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           K +R +V++KK + + K+ A +    E  +  I  G I    K G  V    GV+ F  R
Sbjct: 86  KGERPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
           S   L      +   H+G+ +K  I+     +  IN+S    F +   R  E   +L++ 
Sbjct: 145 SHSSL-----KNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 199

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYEFD-QL 727
              V GVV  +TP  + V V      KG     H ++      V  +   K G E   + 
Sbjct: 200 TEPVLGVVRQITPFGIFVEV------KGVEGLVHYSEISHKGPVNPEKYYKEGDEVCVKA 253

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  D E   L LS K ++ +  +++      + P   +   V +I   G FV     + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSDIENYGAFVDIGNDIEG 310

Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           F   S+ + D   +  SK   VGQ +   I+D++ +  R+ +SLKQ      D       
Sbjct: 311 FLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVF----- 365

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                       SKH            +G V+EGKV    DFG  ++      V G + +
Sbjct: 366 -----------ESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 400

Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H       +      + G VI+  IL + K ++ + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 440



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 132/301 (43%), Gaps = 17/301 (5%)

Query: 361 TNWKNDYNQ-HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK---- 415
           ++ KND N   K++ A I+ VD  + ++ ++   +   N      V   ++ + ++    
Sbjct: 147 SSLKNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLG 205

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           VVR     G+ +++          V  S+++ +     EK YKEG  V V+ + +   + 
Sbjct: 206 VVRQITPFGIFVEVKGVE----GLVHYSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKR 261

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EF 534
             +  +KA+  +        +KPG  +K  V  ++++GA V     ++    +  +S + 
Sbjct: 262 RLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSDIENYGAFVDIGNDIEGFLHVSEISWDK 321

Query: 535 EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
            +  P K   VG E+  +++ +  K++R+ V+ K+ L      +  S  +  D L   G 
Sbjct: 322 NVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LTNRPFDVFESKHQVGDVL--EGK 378

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +  +   G F+    GV G     +   D   +    Y +G V+K +I+      ++I+L
Sbjct: 379 VATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISL 437

Query: 653 S 653
           S
Sbjct: 438 S 438



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 125/288 (43%), Gaps = 61/288 (21%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            HIGK +   ++ ++KE   + +  + F +    + +++S + ++                
Sbjct: 155  HIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 199

Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
               V G+V QI P         + G VH++E+ +           +G  +P   Y EG  
Sbjct: 200  TEPVLGVVRQITPFGIFVEVKGVEGLVHYSEISH-----------KGPVNPEKYYKEGDE 248

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1381
            V  K +      R    + LS++++               ++ P    E+I+D L P   
Sbjct: 249  VCVKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 287

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++  V ++ + G F+ +   ++  + +S +S D  V  P K   +G+ +  +++ ++P +
Sbjct: 288  IKVVVSDIENYGAFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKN 347

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ V+LK   +R     E    S   VGD++ G++  +  +G F+ +
Sbjct: 348  RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNL 391


>gi|333394950|ref|ZP_08476769.1| 30S ribosomal protein S1 [Lactobacillus coryniformis subsp.
           coryniformis KCTC 3167]
          Length = 416

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 6/178 (3%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            I++A   E      + +K G  V+G V  + SFGA V   GG+  L  +  +S   + K
Sbjct: 186 AIVEAEKAEQREHVLATLKAGDTVEGTVARLTSFGAFVDL-GGIDGLVHVSEISFDRVEK 244

Query: 539 PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P    KVG ++  +VL V +  +RI+++ K TL +    I       +   +  G + ++
Sbjct: 245 PSDVLKVGQKITVKVLSVDADRERISLSIKATLPEPWTDIEEKAPAGS---VLEGTVKRL 301

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              G FV  + GV+G    S++       P+ +   G+ VK +++   P + R+ LS 
Sbjct: 302 TTFGAFVEVFPGVEGLVHISQISHQHIATPNEVLSEGEDVKVKVLEVNPEAHRLALSI 359



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 153/352 (43%), Gaps = 30/352 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGA-IVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           DVK G +VKG+++A+D     IV   G GV+ + P+  ++   +    +  KVG  L   
Sbjct: 24  DVKVGDIVKGEILAIDDDKQLIVGIQGTGVEGVVPVKELASQPVADINEVAKVGDVLDLV 83

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKHGCFVRFYN 607
           V+    K         L K +L     ++E  D+      IT   +T++ K G  V    
Sbjct: 84  VISTIGKD-KENGSYLLSKRRLEARKVWSEIQDKFNAGENIT-APVTEVVKGGLVVDA-- 139

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDD 665
           GV+GF P S +  D   +  + Y  G+ ++ +I+   P+  R+ LS   +++  +  + +
Sbjct: 140 GVRGFVPASMI-QDHFVDDLNAYK-GKKLELKIIEIEPSENRLILSHRAIVEAEKAEQRE 197

Query: 666 LV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 720
            V    K G  V G V  +T     V +   G   G +    ++ D +E  +    V+K 
Sbjct: 198 HVLATLKAGDTVEGTVARLTSFGAFVDL---GGIDGLVHVSEISFDRVEKPS---DVLKV 251

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++L +D +   + LS K +L      +   A      SV+ G V  +   G FV
Sbjct: 252 GQKITVKVLSVDADRERISLSIKATLPEPWTDIEEKAP---AGSVLEGTVKRLTTFGAFV 308

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                + G    S+      A  ++    G+ V+  +L+VN E  R+ LS+K
Sbjct: 309 EVFPGVEGLVHISQISHQHIATPNEVLSEGEDVKVKVLEVNPEAHRLALSIK 360



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 136/350 (38%), Gaps = 55/350 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL   P  + + +  VG V+   ++S+I   +  N S+++   R+      
Sbjct: 52  GVEGVVPVKELASQPVADINEVAKVGDVLDLVVISTIGKDKE-NGSYLLSKRRLEARKVW 110

Query: 664 ---DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               D    G  ++  V  V    +VV    +G+   ++  +H  D L            
Sbjct: 111 SEIQDKFNAGENITAPVTEVVKGGLVVDAGVRGFVPASMIQDHFVDDLNAYK-------- 162

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
           G + +  ++    S N L+ +  +++ +  A+Q     + +     V G V  +   G F
Sbjct: 163 GKKLELKIIEIEPSENRLILSHRAIVEAEKAEQREHVLATLKAGDTVEGTVARLTSFGAF 222

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+    +    S    VGQ +   +L V+++  RI+LS+K       
Sbjct: 223 VD-LGGIDGLVHVSEISFDRVEKPSDVLKVGQKITVKVLSVDADRERISLSIK------- 274

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            A+  +    +EEK                      GSV+EG V     FG  V  E   
Sbjct: 275 -ATLPEPWTDIEEKAPA-------------------GSVLEGTVKRLTTFGAFV--EVFP 312

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V G      I+H  +A     +  G  ++  +L+V      + LS+K +
Sbjct: 313 GVEGLVHISQISHQHIATPNEVLSEGEDVKVKVLEVNPEAHRLALSIKAL 362



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            V+G V  +TS G F+ L   +D  V +S +S   VE P     +G+ +  +VLSV+   +
Sbjct: 209  VEGTVARLTSFGAFVDLG-GIDGLVHVSEISFDRVEKPSDVLKVGQKITVKVLSVDADRE 267

Query: 1442 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            R+ +++K +     +  E         G ++ G +KR+ ++G F+ +
Sbjct: 268  RISLSIKATLPEPWTDIE----EKAPAGSVLEGTVKRLTTFGAFVEV 310


>gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016]
 gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
 gi|338204370|ref|YP_004650515.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
 gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016]
 gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
 gi|336449610|gb|AEI58225.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
          Length = 416

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++PG VV+GKV  + +FGA +   GGV  L  +  +S   + KP      G ++  +V
Sbjct: 197 AELQPGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKV 255

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V  + +RI+++ K+TL      I        D ++T G + ++   G FV  + GV+G
Sbjct: 256 LSVDPERERISLSIKQTLPGPWDDI--EEKAPVDSVLT-GTVKRLTSFGAFVEVFPGVEG 312

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P+ +   GQ V+ ++++  P  +R+ LS 
Sbjct: 313 LVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSM 355



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 137/350 (39%), Gaps = 55/350 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDIQKKFDEGEHITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
           G E +  +V    S N L+ +   +I +  +  ++   + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVVEGKVARMTNFGAF 218

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  LG + G    S+         S     GQ V+  +L V+ E  RI+LS+KQ+     
Sbjct: 219 ID-LGGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPERERISLSIKQTLPGPW 277

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +EEK                     + SV+ G V     FG  V  E   
Sbjct: 278 DD--------IEEKAP-------------------VDSVLTGTVKRLTSFGAFV--EVFP 308

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V G      I+H  +A     ++ G  +Q  +++V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMKAL 358



 Score = 48.5 bits (114), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            +L P  +V+G V  +T+ G FI L   +D  V +S +S  +V+ P      G+ V  +VL
Sbjct: 198  ELQPGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVL 256

Query: 1435 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            SV+P  +R+ +++K +        E        V  ++ G +KR+ S+G F+ +
Sbjct: 257  SVDPERERISLSIKQTLPGPWDDIE----EKAPVDSVLTGTVKRLTSFGAFVEV 306



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 30/351 (8%)

Query: 496 VKPGMVVKGKVIAVDS-FGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 554 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           +       ++    ++H++   +     +    +  + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDEGEHITAK--VTQAVKGGLVVDA--G 136

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 664
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +  + +E 
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEK 194

Query: 665 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 721
              +L  G +V G V  +T     + +   G   G +    ++ DH++  +    V+  G
Sbjct: 195 VFAELQPGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISYDHVDKPS---DVLTAG 248

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            +   ++L +D E   + LS K +L      +   A     +SV+ G V  +   G FV 
Sbjct: 249 QDVKVKVLSVDPERERISLSIKQTLPGPWDDIEEKAP---VDSVLTGTVKRLTSFGAFVE 305

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+      A  +     GQ V+  +++V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMK 356



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 36/198 (18%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1316
            +  GD+V G+++++ +   G  + +G  + G VH +E+    V  P         D L+ 
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYDHVDKP--------SDVLTA 247

Query: 1317 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQDVKVKVLSVDPERE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1377 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            +P + ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +V++
Sbjct: 284  APVDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVIN 343

Query: 1436 VEPLSKRVEVTLKTSDSR 1453
            V+P  +R+ +++K  + R
Sbjct: 344  VDPEHQRLGLSMKALEER 361


>gi|260776375|ref|ZP_05885270.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607598|gb|EEX33863.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
          Length = 556

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 146/372 (39%), Gaps = 43/372 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL 
Sbjct: 189 LQEGAEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIQVKVLK 247

Query: 556 VKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +R  V+   K+      +AI   Y E        G +T +  +GCFV    GV+G  
Sbjct: 248 FDRERTRVSLGLKQLGEDPWVAIAKRYPEGHK---LSGRVTNLTDYGCFVEIEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKL 669
             SE+   +    PS + +VG  V+  ++      RRI+L        P +   +   K 
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAK- 363

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ- 726
           G  V+G +  +T   + +     G   G     HL+D   +    ++V   K G E    
Sbjct: 364 GDKVTGKIKSITDFGIFI-----GLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEISAV 418

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
           +L +D E   + L  K        Q+ +D      S      +V+G V  +   G  +  
Sbjct: 419 VLAVDAERERISLGVK--------QMENDPFNAYVSEKKKGVLVNGTVTAVDAKGATIEL 470

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---------- 831
              + G+   S+    +  D S    VG SV +    V+ +   I LS+K          
Sbjct: 471 EEGVEGYIRASEVSRDRVEDASLILSVGDSVEAKFTGVDRKNRVINLSVKAKDEAEEQEA 530

Query: 832 -QSCCSSTDASF 842
             S   + DASF
Sbjct: 531 MASLNKADDASF 542



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 166/387 (42%), Gaps = 58/387 (14%)

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           A  FE      ++ + G +VKG V+A+++    V    G+K+   +P   +F+      +
Sbjct: 6   AQLFEEF-LNETEFQQGTIVKGTVVAIEN--GFVLVDAGLKSESAIP-AEQFKNAAGELE 61

Query: 543 FKVGAELVFRVLGVK--------SKRITVTHKKTLVKSKLAILSSYAEATDRL-ITHGWI 593
            +VG+E+   +  V+        S+     H+  +V  K     +Y EA   + I +G +
Sbjct: 62  VEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEK-----AYEEAETVVGIINGKV 116

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRR 649
                 G F    NG++ F P S + + P  + + + +     +V+K  +  +++  SRR
Sbjct: 117 -----KGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR 171

Query: 650 INLSFMMKPTRVSEDDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA- 705
              + +     V  D+L   ++ G+ V G+V  +T     V +   G   G +    +A 
Sbjct: 172 ---AVIESENSVERDELLESLQEGAEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAW 225

Query: 706 DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHI 759
             ++H +    ++  G E   ++L  D E + + L  K        QL  D     A   
Sbjct: 226 KRVKHPS---EIVNVGDEIQVKVLKFDRERTRVSLGLK--------QLGEDPWVAIAKRY 274

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNIL 817
                + G V N+ + GCFV     + G    S+ +D    ++  SK   VG  V   +L
Sbjct: 275 PEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQ 844
           +++ E  RI+L LKQ C ++   SF +
Sbjct: 334 EIDEERRRISLGLKQ-CKANPWQSFAE 359



 Score = 43.9 bits (102), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 134/352 (38%), Gaps = 45/352 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE++QEG  +   VK++ D+G  +  G     G L   ++A    ++    V  G  +Q 
Sbjct: 186 LESLQEGAEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEIQV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  +S RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGHKLSGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N   +V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351

Query: 392 NPY--LLHNRAPPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      +A    V  K+  I D    + ++ G+  L+ +              +VA 
Sbjct: 352 NPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDIS---------WNVAG 402

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           EE  +  KK  E S V + +   R    L    ++   F   V   S+ K G++V G V 
Sbjct: 403 EEAVREYKKGDEISAVVLAVDAERERISLGVKQMENDPFNAYV---SEKKKGVLVNGTVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
           AVD+ GA ++   GV+       +S   +        VG  +  +  GV  K
Sbjct: 460 AVDAKGATIELEEGVEGYIRASEVSRDRVEDASLILSVGDSVEAKFTGVDRK 511


>gi|217963910|ref|YP_002349588.1| 30S ribosomal protein S1 [Listeria monocytogenes HCC23]
 gi|386027318|ref|YP_005948094.1| 30S ribosomal protein S1 [Listeria monocytogenes M7]
 gi|217333180|gb|ACK38974.1| putative 30S ribosomal protein S1-like protein [Listeria
           monocytogenes HCC23]
 gi|336023899|gb|AEH93036.1| ribosomal protein S1 [Listeria monocytogenes M7]
          Length = 381

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 10/187 (5%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           KAS  + L+   S++K G V++G V  + +FGA V   GGV  L  +  +S   I  P +
Sbjct: 174 KASQKQALL---SEIKEGDVIEGTVQRLANFGAFVDI-GGVDGLVHISQISYKHIATPQE 229

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
             + G ++  +V+G+  +++RI+++ K TL      I       +   +  G + ++   
Sbjct: 230 ALEEGQKVTVKVIGIDPENERISLSIKATLPGPWDGIAEKAPVGS---VLEGKVVRLVTF 286

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM-MKP 658
           G FV  + GV+G    S++  +    P  +   GQ V+ +++    A +R++LS   +K 
Sbjct: 287 GAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVNEADKRLSLSIKELKD 346

Query: 659 TRVSEDD 665
             V E D
Sbjct: 347 APVEEAD 353


>gi|170748864|ref|YP_001755124.1| 30S ribosomal protein S1 [Methylobacterium radiotolerans JCM 2831]
 gi|170655386|gb|ACB24441.1| ribosomal protein S1 [Methylobacterium radiotolerans JCM 2831]
          Length = 570

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 192/487 (39%), Gaps = 69/487 (14%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK--KFKVGAE 548
           F   ++  G VVKG+V+A++   A++      +    L      E   PG+  + KVG E
Sbjct: 24  FLEHEITEGSVVKGRVVAIEKDVAVIDIGAKTEGRVALK-----EFTGPGREGELKVGDE 78

Query: 549 LVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +   V  +++      ++  K   +     L    E  DR+   G I    K G  V   
Sbjct: 79  VEVYVDRIENALGEAVISRDKARREESWVKLEKSFENNDRVT--GTIFNQVKGGYTVDL- 135

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVS 662
           +G   F PRS++ + P  + + +    Q  +     R   +I  SRR  L       R  
Sbjct: 136 DGAVAFLPRSQVDIRPVRDVTPLLGTPQPFQILKMDRRRGNIVVSRRTVLEESRAEQRSE 195

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVI 718
               ++ G ++ GVV  +T     V +   G   G +    +A    +H      +   +
Sbjct: 196 LVANLEEGQVIDGVVKNITEYGAFVDL---GGIDGLLHVTDMAWRRVNHPSEVVTIGQTV 252

Query: 719 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
           K      +++ +++E+  + L  K  L +  + +   A+     + + G V NI + G F
Sbjct: 253 KV-----KIIKINHETHRISLGIKQLLADPWEGI---AARYPEGAKLKGRVTNITDYGAF 304

Query: 779 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           V     + G    S+ +   +     K     Q V   IL+V+    RI+L LKQ+  + 
Sbjct: 305 VELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEVDPVKRRISLGLKQTLQNP 364

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            +A F ++H                           +GS +EG+V    +FG+ +  E  
Sbjct: 365 WEA-FAEKH--------------------------PVGSEVEGEVKNKTEFGLFIGLE-- 395

Query: 898 SDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
            DV G +    L     G  V    + G +++A +LDV   +  + L +K +  D F EA
Sbjct: 396 GDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVRAQVLDVDVEKERISLGVKQLGGDPFAEA 455

Query: 950 NSNRQAQ 956
              ++ Q
Sbjct: 456 GEIKKGQ 462



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 13/200 (6%)

Query: 460 GSCVRVRILGFRH-LEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
           G  V+V+I+   H    ++ GI  L A  +EG+   + +   G  +KG+V  +  +GA V
Sbjct: 249 GQTVKVKIIKINHETHRISLGIKQLLADPWEGIAARYPE---GAKLKGRVTNITDYGAFV 305

Query: 517 QFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 573
           +   G++ L  +  MS  +  V PGK      E+  ++L V    +RI++  K+TL    
Sbjct: 306 ELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEVDPVKRRISLGLKQTLQNPW 365

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEPSSMYHV 632
            A    +   ++     G +    + G F+     V G    S+L  + PG +    +  
Sbjct: 366 EAFAEKHPVGSE---VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFKK 422

Query: 633 GQVVKCRIMSSIPASRRINL 652
           G +V+ +++       RI+L
Sbjct: 423 GDMVRAQVLDVDVEKERISL 442



 Score = 40.8 bits (94), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 133/335 (39%), Gaps = 57/335 (17%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ + G V  +    A + +   +   L + D A+     PSE+        IG+ V   
Sbjct: 203  GQVIDGVVKNITEYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEV------VTIGQTVKVK 255

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            ++ IN E   + L       GI     D   + +     EG  + GR++ I     G  V
Sbjct: 256  IIKINHETHRISL-------GIKQLLAD-PWEGIAARYPEGAKLKGRVTNITDY--GAFV 305

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1339
            ++ P + G +H +E+           + +    P       Q V+ ++LE+    R    
Sbjct: 306  ELEPGIEGLIHVSEMS----------WTKKNVHPGKIVSTSQEVEVQILEVDPVKR---R 352

Query: 1340 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399
            + L L+ +L      N  +   +    G  +E            G VKN T  G FI L 
Sbjct: 353  ISLGLKQTL-----QNPWEAFAEKHPVGSEVE------------GEVKNKTEFGLFIGLE 395

Query: 1400 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
              +D  V LS+L  +   E   +EF  G +V  +VL V+   +R+ + +K       +++
Sbjct: 396  GDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVRAQVLDVDVEKERISLGVKQLGGDPFAEA 455

Query: 1459 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1493
                   +  G IV  ++  V+  G+ + I +T++
Sbjct: 456  -----GEIKKGQIVTCEVIEVKDAGVEVKIVDTDM 485


>gi|343517793|ref|ZP_08754789.1| Tex-like protein N-terminal domain protein [Haemophilus pittmaniae HK
            85]
 gi|343394644|gb|EGV07191.1| Tex-like protein N-terminal domain protein [Haemophilus pittmaniae HK
            85]
          Length = 767

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            +E+I DL P MI++G V NVT+ G FI +    D  V +S+LSD +VE P +    G +V
Sbjct: 642  VEEITDLKPGMILEGTVTNVTNFGAFIDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIV 701

Query: 1430 AGRVLSVEPLSKRVEVTLK-TSDSRTASQSE 1459
              +VL V+   KR+ +T++   ++R +S++E
Sbjct: 702  KVKVLEVDIPRKRIALTMRLDEEARASSKAE 732


>gi|423201882|ref|ZP_17188461.1| 30S ribosomal protein S1 [Aeromonas veronii AER39]
 gi|404615829|gb|EKB12788.1| 30S ribosomal protein S1 [Aeromonas veronii AER39]
          Length = 556

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 22/347 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +V
Sbjct: 187 ANLQEGQEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKV 245

Query: 554 LGVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L    +R  V+   K+      +AI   Y E T RL   G +T +  +GCFV    GV+G
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPETT-RL--SGRVTNLTDYGCFVEIEEGVEG 302

Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
               SE+   +    PS + +VG VV   ++      RRI+L        P ++  +   
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDVVDVMVLDIDEERRRISLGLKQCKSNPWQLFAETHA 362

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFD 725
           K G  VSG +  +T   + +     G   G     HL+D   +    ++V   K G E +
Sbjct: 363 K-GDRVSGKIKSITDFGIFI-----GLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIE 416

Query: 726 Q-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D E   + L  K    +   +  +D       ++V G V  +   G  +     
Sbjct: 417 AVVLQVDPERERISLGVKQIEEDPFNKYLADNK---KGAIVKGKVTEVDAKGAVIELADG 473

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + G+   S A   +  D +    VG  V +  + V+ +   ++LS++
Sbjct: 474 VEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVR 520



 Score = 47.4 bits (111), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 16/193 (8%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           K++ ++    TH+    G  V GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KSNPWQLFAETHA---KGDRVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNNQGE 403

Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKI 596
              ++FK G E+   VL V  +R  ++     ++      + Y A+     I  G +T++
Sbjct: 404 EAVREFKKGDEIEAVVLQVDPERERISLGVKQIEEDP--FNKYLADNKKGAIVKGKVTEV 461

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           +  G  +   +GV+G+   S+   D   + + +  VG  V+ + M     +R ++LS   
Sbjct: 462 DAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSVRA 521

Query: 657 K---PTRVSEDDL 666
           K     RV+ D+L
Sbjct: 522 KDEADERVAIDNL 534


>gi|386008710|ref|YP_005926988.1| rpsA [Listeria monocytogenes L99]
 gi|307571520|emb|CAR84699.1| rpsA [Listeria monocytogenes L99]
          Length = 401

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 10/187 (5%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           KAS  + L+   S++K G V++G V  + +FGA V   GGV  L  +  +S   I  P +
Sbjct: 194 KASQKQALL---SEIKEGDVIEGTVQRLANFGAFVDI-GGVDGLVHISQISYKHIATPQE 249

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
             + G ++  +V+G+  +++RI+++ K TL      I       +   +  G + ++   
Sbjct: 250 ALEEGQKVTVKVIGIDPENERISLSIKATLPGPWDGIAEKAPVGS---VLEGKVVRLVTF 306

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM-MKP 658
           G FV  + GV+G    S++  +    P  +   GQ V+ +++    A +R++LS   +K 
Sbjct: 307 GAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVNEADKRLSLSIKELKD 366

Query: 659 TRVSEDD 665
             V E D
Sbjct: 367 APVEEAD 373


>gi|229586799|ref|YP_002845300.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
 gi|383484036|ref|YP_005392949.1| 30S ribosomal protein S1 [Rickettsia parkeri str. Portsmouth]
 gi|228021849|gb|ACP53557.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
 gi|378936390|gb|AFC74890.1| 30S ribosomal protein S1 [Rickettsia parkeri str. Portsmouth]
          Length = 568

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 152/361 (42%), Gaps = 20/361 (5%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +      ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLDFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V   ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVDFVVLEVDTEKHRVSLSIK 360

Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                P T+ +E++ V  G+++   +  +T   +  +V       G I    ++   +  
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
            ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   + 
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            + + G  V    ++ GF  R++  D +     + + + + + + ++ +   TGRI LS+
Sbjct: 473 EVKDEGLEVLLNDKVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSV 532

Query: 831 K 831
           K
Sbjct: 533 K 533



 Score = 44.3 bits (103), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVDFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
            ++ EK  + L ++  Q+            N  T   E + VG  I   +  +   G+ V 
Sbjct: 348  VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V
Sbjct: 396  LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QV 442

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             L ++                   +P  + E  ++     IV+  +  V  +G  ++L+ 
Sbjct: 443  SLGIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLND 485

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            K+   +  + LSD   E   + F I K +  +V+S+E  + R+ +++K 
Sbjct: 486  KVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSVKA 534



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 115/279 (41%), Gaps = 22/279 (7%)

Query: 568 TLVKSKLAILS-SYAEATDRLIT--------HGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
            +V S+ AIL  S +EA D +++         G +  I  +G F+     V G    +++
Sbjct: 178 NIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDI 236

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSG 675
                  PS +    Q VK  ++     ++RI+L        P    +++   +G  ++G
Sbjct: 237 SWGRVNHPSEVLDFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEF-PVGKQMTG 295

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNES 734
            V       V  ++  K   +G + +  ++  L+     +  +  G E D  +L +D E 
Sbjct: 296 KVTNFADYGV--FIELKDGLEGLVHSSEIS-WLKSNQNPRKTLTIGQEVDFVVLEVDTEK 352

Query: 735 SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK- 793
             + LS K    N   +    A +    +++   + NI + G FV     + G       
Sbjct: 353 HRVSLSIKQCQENPLTKF---AENNPVGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDI 409

Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           + + +  DL K+Y  G  +   +L +N E  +++L +KQ
Sbjct: 410 SWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQ 448


>gi|418633050|ref|ZP_13195467.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU129]
 gi|420204399|ref|ZP_14709957.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM015]
 gi|374839869|gb|EHS03376.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU129]
 gi|394273409|gb|EJE17840.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM015]
          Length = 392

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPNEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 721 G-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GEAVKVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+         ++    GQ V   IL ++ +  RI+LS+K +      
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 IESDASTTQSYL 368



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG   ++  + +   S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSF 654
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 45/237 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPNEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            DA          +K ++L S                G VI+GKV    +FG  +  
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI 213


>gi|418630628|ref|ZP_13193109.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU128]
 gi|374837818|gb|EHS01381.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU128]
          Length = 392

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 721 G-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GEAVKVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+         ++    GQ V   IL ++ +  RI+LS+K +      
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 IESDASTTQSYL 368



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG   ++  + +   S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSF 654
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 45/237 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEIEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            DA          +K ++L S                G VI+GKV    +FG  +  
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI 213


>gi|198283153|ref|YP_002219474.1| 30S ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667071|ref|YP_002425381.1| 30S ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247674|gb|ACH83267.1| ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519284|gb|ACK79870.1| ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 568

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 116/476 (24%), Positives = 191/476 (40%), Gaps = 77/476 (16%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP----HMSEFEI-VKPGKKFKVGAELV 550
           +KPG ++ G V  VD+   IV    G+K+  P+P      +E EI VK G   +V  ELV
Sbjct: 27  LKPGELLTGIVTRVDNDFVIVDV--GLKSEGPIPAEQFRNAEGEIEVKVGDSVEVCLELV 84

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
              +G    R++   K    K+ + +  S+    D  + HG++T   K G F    +GV+
Sbjct: 85  EDGMG--ETRLS-REKARRAKTWVDLEKSF---NDNAVVHGFLTGKVK-GGFTVSIDGVR 137

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            F P S + + P  + +  Y  G+ ++ +I   I   R+ N   + +   V ++  V+ G
Sbjct: 138 AFLPGSLVDVRPVRDVA--YLEGKDLEMKI---IKLDRKRNNVVVSRRAVVEQEQSVERG 192

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--------KSVIKPGY 722
           +L+    + +   AV+  V+      G        D L H T M          V+  G 
Sbjct: 193 ALL----ESIQEGAVLEGVVKNLTDYGAFIDLGGIDGLLHITDMGWRRVKHPSEVVTVGG 248

Query: 723 EFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV-VHGYVCNIIETGCFVR 780
           E   L++  D E   + L  K       +    D +  +P +  + G V N+ + G FV 
Sbjct: 249 EVRVLVLKFDRERGRISLGMK----QLGEDPWRDIARRYPEATRIFGKVTNVTDYGAFVE 304

Query: 781 FLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
               + G    S+ +D    ++  +K  +VGQ V   ILD++ E  RI+L +KQ C  + 
Sbjct: 305 IEEGVEGLVHVSE-IDWTNKNINPAKALHVGQEVEVMILDIDEERRRISLGIKQ-CLPNP 362

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
              F Q                           F  G  + G++    DFGV V  +   
Sbjct: 363 WDDFAQ--------------------------NFQKGDRVSGQIKSITDFGVFVGLDGGI 396

Query: 899 DVYGFITHHQLAGATV--------ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
           D  G I    LA            + G  + A +L +      + L +K +  D F
Sbjct: 397 D--GLIHLSDLAWDRTGEEAVRDFKKGDTLDAVVLSIDPERERISLGVKQMETDPF 450



 Score = 40.4 bits (93), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 14/173 (8%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK----FKVGAELVFR 552
           + G  V G++ ++  FG  V   GG+  L    H+S+    + G++    FK G  L   
Sbjct: 371 QKGDRVSGQIKSITDFGVFVGLDGGIDGLI---HLSDLAWDRTGEEAVRDFKKGDTLDAV 427

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           VL +  +R  ++     +++   I    A     L+  G +  ++  G  +R   GV+GF
Sbjct: 428 VLSIDPERERISLGVKQMETDPFIQFVVANEKGALV-EGEVISVDSRGAEIRLGEGVEGF 486

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
            P  EL              G  ++  I      +R + LS   +   VS++D
Sbjct: 487 LPHRELA------RGVTLSAGDKIEVSIAMVDRKNRTLTLSTKAREAAVSQED 533


>gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 407

 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 138/325 (42%), Gaps = 47/325 (14%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G + K+++  A  T+S   K    I        +L        +G+ V   V+SI
Sbjct: 30   GDTVKGTIVKIEDNQA--TVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVSI 87

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            + EK+ L L  R      + + +    DN + F    D+V   + K     GGLV  +G 
Sbjct: 88   DDEKEKLVLSKRAIDGEKAWEELQAKFDNSEAF----DVVIADVVK-----GGLVADVG- 137

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1343
             + G +  + ++   V D             S Y +G+ +K KV EI R       V LS
Sbjct: 138  -VRGFIPASMVERHFVED------------FSDY-KGRSIKVKVKEIDRE---NNKVILS 180

Query: 1344 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1403
             +  L+     N   +             I  L P   ++G V+ +T  G FI +   +D
Sbjct: 181  AKEVLEADFEANKQKI-------------IASLEPGQELEGTVQRLTPFGAFIDIG-GID 226

Query: 1404 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1463
              V +S +S  +V  P+     G+ V  +VL V+P + ++ +++K +       +    +
Sbjct: 227  GLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPAAGKISLSMKAAQPGPWDSA----I 282

Query: 1464 SNLHVGDIVIGQIKRVESYGLFITI 1488
            ++ + GDIV G ++R+  +G FI I
Sbjct: 283  NSFNTGDIVTGTVRRIVDFGAFIEI 307



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++PG  ++G V  +  FGA +   GG+  L  +  +S   +  P      G  +  +V
Sbjct: 198 ASLEPGQELEGTVQRLTPFGAFIDI-GGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKV 256

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   + +I+++ K        + ++S+   T  ++T G + +I   G F+    GV+G
Sbjct: 257 LKVDPAAGKISLSMKAAQPGPWDSAINSFN--TGDIVT-GTVRRIVDFGAFIEIAPGVEG 313

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P  +   GQ VK +I+   PA +R++LS 
Sbjct: 314 LVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSI 356



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 141/364 (38%), Gaps = 56/364 (15%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G I KIE +   V       G  P  EL        ++   VGQ V+ +++S      ++
Sbjct: 35  GTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVSIDDEKEKL 94

Query: 651 NLS-FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL- 708
            LS   +   +  E+   K  +  S   DVV  + V   ++A    +G IP   +  H  
Sbjct: 95  VLSKRAIDGEKAWEELQAKFDN--SEAFDVVIADVVKGGLVADVGVRGFIPASMVERHFV 152

Query: 709 -EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-----INSAQQLPSDASHIHPN 762
            + +      IK      ++  +D E++ ++LSAK  L      N  + + S    + P 
Sbjct: 153 EDFSDYKGRSIKV-----KVKEIDRENNKVILSAKEVLEADFEANKQKIIAS----LEPG 203

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             + G V  +   G F+  +G + G    S+      A        GQSVR  +L V+  
Sbjct: 204 QELEGTVQRLTPFGAFID-IGGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPA 262

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
            G+I+LS+K +     D++                           +  F  G ++ G V
Sbjct: 263 AGKISLSMKAAQPGPWDSA---------------------------INSFNTGDIVTGTV 295

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 935
               DFG  +  E    V G +   Q+A   V +       G  ++A ILD   A++ V 
Sbjct: 296 RRIVDFGAFI--EIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVS 353

Query: 936 LSLK 939
           LS+K
Sbjct: 354 LSIK 357



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 143/362 (39%), Gaps = 53/362 (14%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G  VKG ++ ++   A V        + PL  +S  ++       +VG E+  +V+ 
Sbjct: 27  LKKGDTVKGTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVS 86

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYA-----------EATDRLITHGWITKIEKHGCFVR 604
           +  +      K+ LV SK AI    A           EA D +I       + K G    
Sbjct: 87  IDDE------KEKLVLSKRAIDGEKAWEELQAKFDNSEAFDVVIAD-----VVKGGLVAD 135

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
              GV+GF P S +      E  S Y  G+ +K ++        R N   ++    V E 
Sbjct: 136 V--GVRGFIPASMVERH-FVEDFSDYK-GRSIKVKVKEI----DRENNKVILSAKEVLEA 187

Query: 665 DL----------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
           D           ++ G  + G V  +TP    + +   G   G +    ++   +H    
Sbjct: 188 DFEANKQKIIASLEPGQELEGTVQRLTPFGAFIDI---GGIDGLVHVSEIS--WQHVAHP 242

Query: 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCN 771
           K  +  G     ++L +D  +  + LS K     +AQ  P D++    +   +V G V  
Sbjct: 243 KDAVSEGQSVRVKVLKVDPAAGKISLSMK-----AAQPGPWDSAINSFNTGDIVTGTVRR 297

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           I++ G F+     + G    S+      A   +    GQ V++ ILD N    R++LS+K
Sbjct: 298 IVDFGAFIEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSIK 357

Query: 832 QS 833
           ++
Sbjct: 358 ET 359



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 20/139 (14%)

Query: 1313 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1372
            P     EGQ V+ KVL++         + LS++++                  PG     
Sbjct: 242  PKDAVSEGQSVRVKVLKVDP---AAGKISLSMKAA-----------------QPGPWDSA 281

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            I   +   IV G V+ +   G FI ++  ++  V +S ++  +V +P +    G+ V  +
Sbjct: 282  INSFNTGDIVTGTVRRIVDFGAFIEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAK 341

Query: 1433 VLSVEPLSKRVEVTLKTSD 1451
            +L   P  KRV +++K ++
Sbjct: 342  ILDFNPAQKRVSLSIKETE 360


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.317    0.135    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,292,507,358
Number of Sequences: 23463169
Number of extensions: 934374433
Number of successful extensions: 2830735
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3948
Number of HSP's successfully gapped in prelim test: 3191
Number of HSP's that attempted gapping in prelim test: 2757019
Number of HSP's gapped (non-prelim): 49406
length of query: 1497
length of database: 8,064,228,071
effective HSP length: 156
effective length of query: 1341
effective length of database: 8,698,941,003
effective search space: 11665279885023
effective search space used: 11665279885023
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 84 (37.0 bits)