BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000449
         (1497 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
          Length = 1871

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 405/1484 (27%), Positives = 685/1484 (46%), Gaps = 176/1484 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V           F ++
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FGKI 1255

Query: 1295 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1354
              + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS 
Sbjct: 1256 GTVSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSR 1301

Query: 1355 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1414
             + +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S  
Sbjct: 1302 TNPETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHV 1356

Query: 1415 YVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
               SP K+       P GKL+  RVL +      VE++    D+
Sbjct: 1357 SQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score = 33.9 bits (76), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 75/157 (47%), Gaps = 16/157 (10%)

Query: 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1396
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTL-LCLSLTGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1397 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1457 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +S     EIN++ ++  G ++ G +  ++ +G+F  +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL 1343


>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
          Length = 1874

 Score =  420 bits (1080), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 415/1481 (28%), Positives = 684/1481 (46%), Gaps = 180/1481 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   KK +K   KT++   ET   
Sbjct: 8    FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 63

Query: 107  LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                     S K  R   +I  ++++  GM++ G V EVNE +L I LP GL+G  +  +
Sbjct: 64   ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTE 114

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     LP +F  G LV C+V  LD  K    K+ + LSL  
Sbjct: 115  ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS ET++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +  +R VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L FL++F+G VD  HL      T + N     ++V A +L V P +RAV L+L P
Sbjct: 293  PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +   ++G + D   V       G    +      T AY   + ++  + 
Sbjct: 348  VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKGKV+ + 
Sbjct: 405  TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
              G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    K+K++ +T KKT
Sbjct: 465  PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y +A   L THG+I +++ +GC V+FYN VQG  PR EL  +   +P S
Sbjct: 525  LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDDLVKLGSLVSG--VVDV----V 680
            +++ GQVVK  +++  P+  R+ LSF +   P +  E    K    VS   + DV     
Sbjct: 585  VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEK 644

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+      G +PT HL+DH+ +  ++   ++ G    ++L L      +LL 
Sbjct: 645  TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 703

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V NI + G FV+F   L+G AP++   D  
Sbjct: 704  RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 763

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 764  VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823

Query: 856  LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
                 +  S L + +     G  ++ +V E  + G V+ F E   V G +   + +  AG
Sbjct: 824  RSLMSNRDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +E G   +A IL+V   +  V +SL    +        NR+A+K K+  +        
Sbjct: 882  QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
              + AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 926  --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 984  GVTG--LLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTV 1041

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097

Query: 1132 K-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV-- 1171
               FL            ELS++PS L      T++      L +      GQ VT ++  
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKK 1157

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--L 1229
            Y +  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+   +  K  L
Sbjct: 1158 YNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFL 1217

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
               ++ P +                  + +G++  GR+ K+ +   GL V      +GRV
Sbjct: 1218 CLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFP---FGRV 1255

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
                +    VSD  S      F P       Q V+C VL  +  V     + LSLRS   
Sbjct: 1256 GRVSM--FHVSDSYSETHLEDFVP------QQVVRCYVLSAATPV-----LTLSLRS--- 1299

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
              S TN    S   D     +  IEDL    +++G+VK+V   G  + L   +       
Sbjct: 1300 --SRTNPETKSKITDP---EINSIEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHP 1354

Query: 1410 NLS--DGYVESP-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            ++S  +    +P ++  P GKL+  +VL +      VE++L
Sbjct: 1355 HVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395



 Score = 51.2 bits (121), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 114/543 (20%), Positives = 205/543 (37%), Gaps = 113/543 (20%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+  T++ G ++   +  +     LVD+ +        R     ++AQ+  R++     L
Sbjct: 179  LSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGA-----RAFLPLQKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
             V Q +N ++E VK +  V++L     SIG++ VS                   A +   
Sbjct: 234  KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
              S T   LL                         G +V+A++ ++ PL L LKF   F 
Sbjct: 270  EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            G +    ++  K+      FSN    Q V A ++         ++    LS++P  L   
Sbjct: 306  GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353

Query: 1149 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1205
               ++LL ++    +    V G+       + L   T++   +  L      ++P     
Sbjct: 354  RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
                F  G      ++  ++  +L  L LR     I +      +D     I  G +V G
Sbjct: 411  ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1325
            ++  I     G+VV++G  + G V    L +I + +P   Y  G        DE   VKC
Sbjct: 459  KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKC 505

Query: 1326 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1385
            +VL      +      ++L+ +L              V++    +   +D  P +   G+
Sbjct: 506  RVLLCDPKAKKLM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGF 548

Query: 1386 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445
            +  V   GC +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ +
Sbjct: 549  ILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLL 608

Query: 1446 TLK 1448
            + +
Sbjct: 609  SFR 611



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 69/402 (17%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557

Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1233
            ++     ++  +    L + Y P      +  F+ G+ V   VL+   +KE+ LL  RL+
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILSGV-GGLVVQIGPH-LYGRV 1289
              P Q+G             Q+   +  +  G+++  K+L     GL V + PH + G +
Sbjct: 614  SDPKQEG-----------EGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFL 662

Query: 1290 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1349
                L +   + PL       +  L   D    V C  L +S   R     + +L S+++
Sbjct: 663  PTAHLSDHVTNGPLL------YHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVE 713

Query: 1350 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409
            G                G++ +   ++ P M++ G+VKN+   G F+     L      +
Sbjct: 714  G----------------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKA 757

Query: 1410 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
             LSD +V S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 758  ILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 5/118 (4%)

Query: 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1434
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1435 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
              +P +K++ +TLK +  +S+  +   I    +   G    G I RV+ YG  +   N
Sbjct: 509  LCDPKAKKLMMTLKKTLVESKLPA---ITCYDDAKPGLQTHGFILRVKDYGCIVKFYN 563


>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
          Length = 1862

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 408/1493 (27%), Positives = 686/1493 (45%), Gaps = 183/1493 (12%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF +      +D            V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
             T   L+L ++  +          ++ET   K                    ++KK+ S 
Sbjct: 987  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
             +G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103

Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRV 1167
            I     K++K  P     F   + ELS++PS L  S       S+   E+      GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1344
              G+V    L +         Y E    PL  +   + V+C +L  +  V     + LSL
Sbjct: 1265 KIGKVSMFHLSD--------SYSEA---PLEDFCPQKIVRCYILSTAHRV-----LALSL 1308

Query: 1345 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1404
            RSS     + N       ++ P   +  IED+    +++GYVK V      I L   +  
Sbjct: 1309 RSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLG 1360

Query: 1405 KVLLSNLSDGYVESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452
                S++S+     PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1361 LAKYSHVSECV--PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411


>sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=rrp5 PE=1 SV=1
          Length = 1690

 Score =  227 bits (578), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 227/818 (27%), Positives = 373/818 (45%), Gaps = 62/818 (7%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG  SLT  E  E   E   +F     G  + +KK + K +     +  +L +    
Sbjct: 35  FPRGGASSLTPLEYKEAVLEAKKDFMESASGTAELSKKTRPKKKGSKKSSKSELDN---- 90

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADA 166
                L  +   +  KNI+ G  + G +A++N  DL + LP  L G         + +D 
Sbjct: 91  --EENLKVHIQSLRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDR 148

Query: 167 LDPILDNEIEAN-----EDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLS 215
           LD I DN  E N     ED L     L  ++ VGQ V   V  L  ++  + GKR I LS
Sbjct: 149 LDSI-DNHAEDNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELS 207

Query: 216 LRLSLLYKGLSLETVQ--EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
           L+      G + E      G ++ A V SIEDHG +   G+ ++TGFL + ++  N    
Sbjct: 208 LKPQDA-NGSAPEAADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPF 264

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSI 332
           V+   LL  V+   DR   + +LS     ++   TK L+ + S+  ++PG  ++  V  I
Sbjct: 265 VEGQSLLCSVISKEDR---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDI 316

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG- 388
            E+GV+  ++     T DI+H  +     + ++ +   K V AR+LFV   DP   AV  
Sbjct: 317 KESGVIAKYMGVVDVTSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSF 375

Query: 389 ----LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-IS 443
               LT N +   N   P  + +G I + +KV  V   LG+  D+    +S  A+++ +S
Sbjct: 376 LPHVLTFN-FATPNTPHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLS 434

Query: 444 DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           D     +      YK  S    RI+ + +++ L     + S          D++ G  V 
Sbjct: 435 DKKVAGISPNSGPYKVDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVD 494

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRI 561
           G +  +   G +V    G+  L P  HM++  +  P ++FKVG+ +  RVL   V  KR+
Sbjct: 495 GTIAKLIPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRV 554

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
            +T KK+L+ + L ++  Y +AT    T G + +I + G  V FYN V+ F P SE+   
Sbjct: 555 LLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEA 614

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVD 678
              +    + VGQ +   I+S  P +R++ +    +     R+   + +K GS++SG+V 
Sbjct: 615 YIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVL 674

Query: 679 VVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
             T ++V+V +  K    G I    L D  L   + + + ++   +  ++LVL  ++S  
Sbjct: 675 QKTEDSVIVDLGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKK 732

Query: 738 L--LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
           L  LS K SL+ +A++  +P + + +       G+V N    G FV F   L    P++ 
Sbjct: 733 LISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAY 792

Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S  Y   QSV    L V     +  +S K
Sbjct: 793 ISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFK 830



 Score =  167 bits (422), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 211/937 (22%), Positives = 381/937 (40%), Gaps = 154/937 (16%)

Query: 609  VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 657
            + GFA  S L      G+ P   P   Y V    + RI++         LSF       +
Sbjct: 424  ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480

Query: 658  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 713
              R+ +   +++G  V G +  + P  +VV  I++G + G +P+ H+AD      E    
Sbjct: 481  FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
            + S +K      ++L  +     +LL+ K SL+N+   L  D     P +   G +  I 
Sbjct: 536  VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            E G  V F   +  F P S+  +    D  + + VGQ++   I+  + E  ++ +  ++ 
Sbjct: 591  EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
               S DA                         L+  E    GSV+ G V +  +  V+V 
Sbjct: 651  ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 942
              +   V G IT  QL    +   S +           +  +L    +++L+ LSLK   
Sbjct: 685  LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742

Query: 943  IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
            ++  +E   NR        +E  K  G      T    VE    + LV  +P+   S  Y
Sbjct: 743  VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 1047
              V        P   +   QSV    +++            P +    + +  +++  + 
Sbjct: 798  VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 1105
            +    +  KK   Y  G +  A +T  K  +L +      HGR+ ++EV D+   +V+  
Sbjct: 850  DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1155
                 F  G  +  R++   +  + K          K FL ELS++PS+L +     K  
Sbjct: 910  KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
              E     G  VTG+V  V  E   ++++  +  ++ ILD   +  EL   Q+ F +GKA
Sbjct: 967  --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +  +V  +N E  +    + P Q G  + T              G  + G+++ +     
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335
            G ++Q+  H+ GRV   ++           +D+    P + +     V   VL +    R
Sbjct: 1067 GAILQLPGHMSGRVSRIDM-----------FDDYDILPETKFTRNNLVGVCVLSVDVPNR 1115

Query: 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1395
                           +S+ NS   S  V+   K +  ++DL    I +G+V NV ++G F
Sbjct: 1116 KV------------ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLF 1163

Query: 1396 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455
            + +   L A+V +  L D +++  +  F + +LV G ++ ++  SKR+E++LK S  + +
Sbjct: 1164 VTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQSKIKDS 1223

Query: 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1492
            S+      +++ VG  + G + +V  YG+ I I+ T+
Sbjct: 1224 SEI-TKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTD 1259



 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 194/911 (21%), Positives = 349/911 (38%), Gaps = 174/911 (19%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + +++I  G  + G +A++  + +V+ +  G+ GL  +    D  L              
Sbjct: 482  LRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL---------QFPER 532

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSL----ETVQEGMVLTAYVK 241
             F VG  V C VL  +     + ++++ L+L+ SLL   L L    E    G      + 
Sbjct: 533  RFKVGSSVKCRVLSTN-----VLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLA 587

Query: 242  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
             I + G I+ F   S   FLP + ++E    D +           + +T  V  +S DP+
Sbjct: 588  RIFEDGAIVEF-YNSVRAFLPVSEMSEAYIRDAREHF-------KVGQTLSVTIVSCDPE 639

Query: 302  TVSKCV-----TKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
                 V     + D K +   + +  G ++S  V    E+ V++      TG + +  L 
Sbjct: 640  NRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLC 699

Query: 356  NTFPTTNWKNDYNQHKKVNAR-----------ILFVDPTSRAVGLTLNPYLLH----NRA 400
            +         D N+  KV  +           +L  D + + + L+L   L+     NR 
Sbjct: 700  D--------GDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRM 751

Query: 401  PPSHVKVGDIYDQSK---VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
            P   + + D+ +  K    VR     G+ ++     V   A V  + ++EE V      Y
Sbjct: 752  P---INITDLKEGIKYFGFVRNATTFGVFVEFCDGLV---ALVPKAYISEEYVPVPSAVY 805

Query: 458  KEGSCVRVRIL--------GFRHLEGLATGILKASAF------------EGLVFTHSDVK 497
            K    V    L         F   + LA    KA  F            E +  T+ D  
Sbjct: 806  KPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTY-DYV 864

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIV---KPGKKFKVGAELVFR 552
             G +    V +  +    V     V     +  + +   EIV   KP K+F  G ++  R
Sbjct: 865  AGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIRVR 924

Query: 553  VLGVKSKR----ITVTHK-------KTLVKSKLAILSSYAEATDRLI----THGWITKIE 597
            VLG+   R    + ++H+       +  V+  +  +  ++    +        G++  + 
Sbjct: 925  VLGIHDSRNHKFLPISHRVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFVNNVS 984

Query: 598  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSF 654
            K   +V     V G  P  +L  D   E +S+   + +G+ +KC +++   A   I LS 
Sbjct: 985  KECVWVSLTPSVNGRIPILDLTTDVK-ELNSLQKHFFLGKAIKCYVVN---AEDSITLS- 1039

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             + P +  E+ L     LV  V +V    A++      G+  G +    + D  +     
Sbjct: 1040 AIGPLQGFEN-LTPGSRLVGKVTNVNEAGAILQL---PGHMSGRVSRIDMFDDYD----- 1090

Query: 715  KSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV--- 764
               I P  +F +       +L +D  +  + LSA+ S     Q  P +      NSV   
Sbjct: 1091 ---ILPETKFTRNNLVGVCVLSVDVPNRKVALSARNS---RTQSQPVEIKDKEINSVDDL 1144

Query: 765  -----VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
                   G+VCN+   G FV     L       +  D    D    ++V Q V+ +I+ +
Sbjct: 1145 KIGDICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGI 1204

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
            ++++ RI +SLKQS     D+S + + F                          +GS ++
Sbjct: 1205 DNDSKRIEMSLKQSKIK--DSSEITKTF----------------------ADIAVGSNLD 1240

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAER 932
            G V +  D+GV++  +   ++ G     ++A A V        SG  ++A +LDV   +R
Sbjct: 1241 GTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKR 1300

Query: 933  LVDLSLKTVFI 943
             + L LK+ + 
Sbjct: 1301 RIALGLKSSYF 1311



 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            L+  E+L+P   + G V NV   G  + L   +  +V   ++ D Y   PE +F    LV
Sbjct: 1044 LQGFENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLV 1103

Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQ------SEINNLSNLHVGDIVIGQIKRVESYG 1483
               VLSV+  +++V   L   +SRT SQ       EIN++ +L +GDI  G +  V + G
Sbjct: 1104 GVCVLSVDVPNRKV--ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQG 1161

Query: 1484 LFITIENTNLVRNK 1497
            LF+TI +  + R K
Sbjct: 1162 LFVTIGHNLIARVK 1175



 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 122/523 (23%), Positives = 198/523 (37%), Gaps = 113/523 (21%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP----------RSKAVDG---------- 797
            +I P S++ G +  I      V     LTG+ P          R  ++D           
Sbjct: 105  NITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEE 164

Query: 798  -----QRADLSKTYYVGQSVRSNILDVNSE----TGR--ITLSLKQSCCSSTDASFMQEH 846
                 Q  DL   Y VGQ VR ++  + SE    TG+  I LSLK       DA      
Sbjct: 165  EDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQ-----DA------ 213

Query: 847  FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY-GFIT 905
                           NGS  +  + F+ GS+I+  V    D G+V  F+   + Y GF++
Sbjct: 214  ---------------NGSAPEAAD-FVAGSMIQAVVSSIEDHGIV--FDIGINNYTGFLS 255

Query: 906  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
               +       G  +  ++  ++K +R+  LSL                         ++
Sbjct: 256  KKHINDFPFVEGQSLLCSV--ISKEDRIFHLSLTAT----------------------ST 291

Query: 966  KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF---PQK------QFL 1016
            K L V  +V AI+     N LV  + E      Y  V D  +  +   P K      +F 
Sbjct: 292  KALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYHSSPVKGEDLEDKFQ 351

Query: 1017 NGQSVIATVM-ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 1075
              +SV A V+  +P       +  L   +  T   ++         D+G +V A      
Sbjct: 352  LAKSVPARVLFVIPGDPPKIAVSFLPHVL--TFNFATPNTPHPDQLDIGFIVNAAKVTYV 409

Query: 1076 PLELRLKFGIG---FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
               L +   +G     G  HI+ ++D K   +      +K+  T  ARII  S   +   
Sbjct: 410  SSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEARIINYSYVDN--- 466

Query: 1133 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
              L+ LS + S+L      ++      D+ +GQ V G + K+  +  ++TIS  +     
Sbjct: 467  --LYILSFQQSVL------NQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGING--L 516

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            +  +      LQ  +RRF +G +V   VLS N  +K + L L+
Sbjct: 517  VPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLK 559


>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC
            204508 / S288c) GN=RRP5 PE=1 SV=1
          Length = 1729

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 312/1346 (23%), Positives = 578/1346 (42%), Gaps = 185/1346 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALDP----ILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNIYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   I   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  VG  +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++P+      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRPATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKSVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKN 1296
               G+ V++    ++ G  H TE+ +
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 222/858 (25%), Positives = 366/858 (42%), Gaps = 156/858 (18%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      +      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1305 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360
             +     E   D ++       +   VL +    +    +ELSLR +     S  S    
Sbjct: 1123 DFSLTLKEAFEDKINN-----VIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH--- 1171

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1473
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1474 GQIKRVESYGLFITIENT 1491
            G IK V  +G+F+ ++NT
Sbjct: 1270 GTIKSVTDFGVFVKLDNT 1287



 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 632  VGQVVKCRIMSSIPASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVV 687
            +  V+   ++S    +++I LS      +     S +DL K G +V G+V  V    + V
Sbjct: 1136 INNVIPTTVLSVDEQNKKIELSLRPATAKTRSIKSHEDL-KQGEIVDGIVKNVNDKGIFV 1194

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLI 746
            Y+  K   +  +P   L+D   +    K   KP  Y   +++  D E S + L+ + S I
Sbjct: 1195 YLSRK--VEAFVPVSKLSDS--YLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEI 1249

Query: 747  NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSK 804
            N   ++    S I    V  G + ++ + G FV+      +TG A  ++  D +  DLS 
Sbjct: 1250 NGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSA 1309

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
             + VG  V++ +L  N E  +I+LSLK S  S
Sbjct: 1310 LFGVGDRVKAIVLKTNPEKKQISLSLKASHFS 1341



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 37/330 (11%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 278
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 394
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L P 
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRPA 1161

Query: 395  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G + +V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSV 1275

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
           GN=rpsA PE=3 SV=1
          Length = 568

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 156/362 (43%), Gaps = 24/362 (6%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           IL+ S  E      S +K G+V++G V  +  +GA +   G V  L  L  +S   +  P
Sbjct: 186 ILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +   ++   V+    K+KRI++  K+       AI   +          G +T   
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301

Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            +G F+   +G++G    SE+  L     P  M  +GQ V+  ++       R++LS   
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359

Query: 657 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
              +  E+ L+K      +G+++   +  +T   +  +V+      G I    ++     
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
             ++KS  K G E + ++L ++ E   + L  K  L N  Q++   +     +++V   V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQKI---SDEYKKSTIVKAVV 471

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             I + G  V    ++TGF  R +  D +     + + V + + + ++ +   TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLS 531

Query: 830 LK 831
           +K
Sbjct: 532 IK 533



 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 136/612 (22%), Positives = 248/612 (40%), Gaps = 107/612 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR+ L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ GVV  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGIVLEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
            F+Q     ++  D ++  + L  K    N     P DA          + G V N  + G
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304

Query: 777  CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
             F+     L G    S+ +      +  K   +GQ V   +L+V++E  R++LS+KQ C 
Sbjct: 305  VFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C- 362

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                    QE+ L                 +K+ E   IG++I+  +    DFG+ V   
Sbjct: 363  --------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVLG 397

Query: 896  EHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             + D  G I    ++          + + G  I+  +L +   +  V L +K +  + ++
Sbjct: 398  NNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQ 455

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
            + +   +                   V A+V  +K++ LV+ L   N   G+    + + 
Sbjct: 456  KISDEYKKS---------------TIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELSD 498

Query: 1008 QKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDV 1063
            +K  QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++
Sbjct: 499  EKDEQKPEMFKVHEEIDAKVVSIEKST--GRVLLSIKAHKIAERQKTLKEYGSSDNTTNM 556

Query: 1064 GSLVQAEITEIK 1075
            G ++   + E K
Sbjct: 557  GDILANVLEEKK 568



 Score = 40.0 bits (92), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 121/287 (42%), Gaps = 41/287 (14%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    L +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSN-QNPRKMLTIGQEVEFIVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
            ++ EK  + L ++  Q+   +  +  + +N       G I+   I  I     G+ V +G
Sbjct: 348  VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PIGTIIKAPIRNITDF--GIFVVLG 397

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
             ++ G +H  ++           +++   D L  Y +G  ++CKVL I+        V L
Sbjct: 398  NNMDGMIHEGDI----------SWEDNGTDLLKSYKKGDEIECKVLAINFEKE---QVSL 444

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             ++  L                 P  + +  ++   + IV+  V  +   G  ++L+ K+
Sbjct: 445  GIKQLL-----------------PNPYQKISDEYKKSTIVKAVVTEIKDDGLVVLLNNKV 487

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
               +    LSD   E   + F + + +  +V+S+E  + RV +++K 
Sbjct: 488  TGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLSIKA 534


>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
           JCSC1435) GN=rpsA PE=3 SV=1
          Length = 392

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 26/261 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           ++KV  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E     + KAS  E L         G V+KGKV  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENDVKKASLLESL-------NAGDVIKGKVARLTNFGAFVDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P     VG E+  +V  V+  ++RI+++ K TL     +I   + E 
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV    GVQG    SE+  +    P      GQ V  +I+  
Sbjct: 280 D---VIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSFMMKPTRVSED 664
              + RI+LS  +K T   ED
Sbjct: 337 DEENERISLS--IKATLPKED 355



 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 150/367 (40%), Gaps = 33/367 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    I    +T++ K G  V    G
Sbjct: 71  VTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 ASLLESLNAGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E D ++  ++ ++  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTPFESI---KGQFHEDDVIEGKVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-----KQSC 834
                + G    S+          +    GQ V   IL ++ E  RI+LS+     K+  
Sbjct: 297 EIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKEDV 356

Query: 835 CSSTDAS 841
             S DA+
Sbjct: 357 VESDDAT 363



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 161/393 (40%), Gaps = 80/393 (20%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+    EN    VK G  ++  V 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAYVT 72

Query: 285 -----------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL----L 319
                            R ++  +   YL    D    +   VT+ +KG + +D+     
Sbjct: 73  KIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDVGQRGF 132

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           VP  ++ST           +   + F G      ++   P  N             R++ 
Sbjct: 133 VPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVIL 170

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
              + +AV    N   +   +    +  GD+  + KV R+    G  +DI          
Sbjct: 171 ---SRKAVEQAEND--VKKASLLESLNAGDVI-KGKVARL-TNFGAFVDIGGVD----GL 219

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL--VFTHS 494
           V +S+++ E V   E     G  V V++    +  E ++  I     + FE +   F   
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           DV     ++GKV+ + +FGA V+   GV+ L  +  ++   I  PG+K + G ++  ++L
Sbjct: 280 DV-----IEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKIL 334

Query: 555 GV--KSKRITVTHKKTL-----VKSKLAILSSY 580
           G+  +++RI+++ K TL     V+S  A   SY
Sbjct: 335 GIDEENERISLSIKATLPKEDVVESDDATTQSY 367



 Score = 47.8 bits (112), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 188  LESLNAGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVDVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  ++R+ +++K  D+       I      H  D++ G++ R+ ++G F+ I
Sbjct: 247  VKSVEKDAERISLSIK--DTLPTPFESIK--GQFHEDDVIEGKVVRLANFGAFVEI 298



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 55/290 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKQGDEIEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +    +D E+     S  Y L  S +QL ++ S+      +  + ++   V  +++ G 
Sbjct: 70  YVTKIEVDEEND----SGVYIL--SKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D           +K ++L+S                G VI+GKV    +FG  V     
Sbjct: 180 NDV----------KKASLLES-------------LNAGDVIKGKVARLTNFGAFVDI--- 213

Query: 898 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 214 GGVDGLVHVSELSHEHVDSPE-------DVVSVGQEVDVKVKSVEKDAER 256


>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
           saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
           PE=3 SV=1
          Length = 393

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 22/250 (8%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D+      P++ +ST      SD  E +V KL+ +  + +  RV 
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDF-EGQVLKLKVEELDPANNRV- 168

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
           IL  + +E L     K    E L         G V++GKV  + +FGA V   GGV  L 
Sbjct: 169 ILSRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLV 220

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 584
            +  +S   +  P     +G  +  ++  V   S+RI+++ K TL     +I   + E  
Sbjct: 221 HVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGD 280

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
              +  G + ++   G FV    GVQG    SE+       PS     GQVV  +++   
Sbjct: 281 ---VIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVD 337

Query: 645 PASRRINLSF 654
             + RI+LS 
Sbjct: 338 VENERISLSI 347



 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 156/386 (40%), Gaps = 37/386 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  ++    IV   G     + P+  +S   I  P    KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L K +L    SY    ++L         +T++ K G  V    G
Sbjct: 71  VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 663
            +GF P S +  D   E  S +  GQV+K ++    PA+ R+ LS   K     E     
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQVLKLKVEELDPANNRVILS--RKAVEALENAEKK 184

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D+L++    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G   + ++  +D +S  + LS K +L +  + +  +    +   V+ G V  +   G FV
Sbjct: 240 GETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGE---FNEGDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                + G    S+         S+    GQ V   +L V+ E  RI+LS+K +  +   
Sbjct: 297 EIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN- 355

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSE 865
                   ++E      QS   NGS+
Sbjct: 356 --------VIESDSETTQSYLDNGSD 373



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 21/170 (12%)

Query: 1319 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1378
            EGQ +K KV E+         V LS R +++ + +    D            E +E L+ 
Sbjct: 150  EGQVLKLKVEELDP---ANNRVILS-RKAVEALENAEKKD------------ELLESLNE 193

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1438
              +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    IG+ V  ++ SV+ 
Sbjct: 194  GDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDK 252

Query: 1439 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
             S+R+ +++K  D+  +    I      + GD++ G + R+ ++G F+ I
Sbjct: 253  DSERISLSIK--DTLPSPFESIK--GEFNEGDVIEGTVVRLANFGAFVEI 298



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
           GD+  + KV R+    G  +DI          V +S+++ E V+  E     G  V V+I
Sbjct: 194 GDVI-EGKVARL-TNFGAFVDIGGVD----GLVHVSELSHEHVKSPEDVVSIGETVNVKI 247

Query: 468 LGF-RHLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
               +  E ++  I     S FE +     +   G V++G V+ + +FGA V+   GV+ 
Sbjct: 248 KSVDKDSERISLSIKDTLPSPFESI---KGEFNEGDVIEGTVVRLANFGAFVEIKPGVQG 304

Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAE 582
           L  +  +S   I  P +  + G  +  +VLG  V+++RI+++ K TL      ++ S +E
Sbjct: 305 LVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN--VIESDSE 362

Query: 583 ATDRLITHG 591
            T   + +G
Sbjct: 363 TTQSYLDNG 371



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 112/241 (46%), Gaps = 50/241 (20%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +   ++EGD++ G+++++ +   G  V IG  + G VH +EL +  V  P        
Sbjct: 185  DELLESLNEGDVIEGKVARLTNF--GAFVDIG-GVDGLVHVSELSHEHVKSPE------- 234

Query: 1311 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1370
             D +S    G+ V  K+  + +    +  + LS++                  DT     
Sbjct: 235  -DVVSI---GETVNVKIKSVDKD---SERISLSIK------------------DTLPSPF 269

Query: 1371 EKIE-DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            E I+ + +   +++G V  + + G F+ +   +   V +S +S  ++ SP +    G++V
Sbjct: 270  ESIKGEFNEGDVIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVV 329

Query: 1430 AGRVLSVEPLSKRVEVTLKT---------SDSRTASQSEINNLS----NLHVGDIVIGQI 1476
            + +VL V+  ++R+ +++K          SDS T +QS ++N S    N  +GD+   ++
Sbjct: 330  SVKVLGVDVENERISLSIKATLPNENVIESDSET-TQSYLDNGSDDEDNPTLGDVFGDKL 388

Query: 1477 K 1477
            K
Sbjct: 389  K 389



 Score = 33.9 bits (76), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433
            E L  N  ++  V  V   G  + + ++    V  S +S  ++E    +F  G+++  +V
Sbjct: 103  EQLDNNQTIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIEDF-SDFE-GQVLKLKV 158

Query: 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
              ++P + RV ++ K  ++   ++ +   L +L+ GD++ G++ R+ ++G F+ I
Sbjct: 159  EELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDI 213


>sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2)
           GN=rpsA PE=3 SV=1
          Length = 391

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350



 Score = 34.7 bits (78), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1431
            E L  N I++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +V  ++P + RV ++ K  +       +   L +L+ GD++ G++ R+  +G FI I
Sbjct: 157  KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDI 213


>sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476)
           GN=rpsA PE=3 SV=1
          Length = 391

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350



 Score = 34.7 bits (78), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1431
            E L  N I++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +V  ++P + RV ++ K  +       +   L +L+ GD++ G++ R+  +G FI I
Sbjct: 157  KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDI 213


>sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL)
           GN=rpsA PE=3 SV=1
          Length = 391

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350



 Score = 34.7 bits (78), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1431
            E L  N I++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +V  ++P + RV ++ K  +       +   L +L+ GD++ G++ R+  +G FI I
Sbjct: 157  KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDI 213


>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
           Wilmington) GN=rpsA PE=3 SV=1
          Length = 568

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 154/362 (42%), Gaps = 24/362 (6%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           IL+ S  E      S +K GM+++G V  +  +GA +   G V  L  L  +S   +  P
Sbjct: 186 ILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            +  +   ++   V+    K+KRI++  K+       AI   +          G +T   
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301

Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            +G F+   +G++G    SE+  L     P  M  +GQ V+  ++       R++LS   
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359

Query: 657 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
              +  E+ L+K      +G+++   +  +T   +  +V+      G I    ++     
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
             ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQKI---SDEYKKGTIVKAVV 471

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             I + G  V    ++TGF  R +  D +     + + V + + + ++ +   TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLS 531

Query: 830 LK 831
           +K
Sbjct: 532 VK 533



 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 136/612 (22%), Positives = 248/612 (40%), Gaps = 107/612 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR+ L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ GVV  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMILEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
            F+Q     ++  D ++  + L  K    N     P DA          + G V N  + G
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304

Query: 777  CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
             F+     L G    S+ +      +  K   +GQ V   +L+V++E  R++LS+KQ C 
Sbjct: 305  VFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C- 362

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                    QE+ L                 +K+ E   IG++I+  +    DFG+ V   
Sbjct: 363  --------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVLG 397

Query: 896  EHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             + D  G I    ++          + + G  I+  +L +   +  V L +K +  + ++
Sbjct: 398  NNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQ 455

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
            + +   +                   V A+V  +K++ LV+ L   N   G+    + + 
Sbjct: 456  KISDEYKK---------------GTIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELSD 498

Query: 1008 QKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDV 1063
            +K  QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++
Sbjct: 499  EKDEQKPEMFQVDEEIDAKVVSIEKST--GRVLLSVKAHKIAERQKTLKEYGSSDNTTNM 556

Query: 1064 GSLVQAEITEIK 1075
            G ++   + E K
Sbjct: 557  GDILANVLEEKK 568



 Score = 38.1 bits (87), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 120/287 (41%), Gaps = 41/287 (14%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    L +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSN-QNPRKMLTIGQEVEFIVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
            ++ EK  + L ++  Q+   +  +  + +N       G I+   I  I     G+ V +G
Sbjct: 348  VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PIGTIIKAPIRNITDF--GIFVVLG 397

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
             ++ G +H  ++           +++   D L  Y +G  ++CKVL I+        V L
Sbjct: 398  NNMDGMIHEGDI----------SWEDNGTDLLKSYKKGDEIECKVLAINFEKE---QVSL 444

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             ++                   +P  + +  ++     IV+  V  +   G  ++L+ K+
Sbjct: 445  GIKQL-----------------SPNPYQKISDEYKKGTIVKAVVTEIKDDGLVVLLNNKV 487

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
               +    LSD   E   + F + + +  +V+S+E  + RV +++K 
Sbjct: 488  TGFIKRVELSDEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLSVKA 534


>sp|Q7A5J0|RS1_STAAN 30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315)
           GN=rpsA PE=1 SV=1
          Length = 391

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+    KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIHGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIHGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1431
            E L  N I++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +V  ++P + RV ++ K  +       +   L +L+ GD++ G++ R+  +G FI I
Sbjct: 157  KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDI 213


>sp|Q99U14|RS1_STAAM 30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 /
           ATCC 700699) GN=rpsA PE=1 SV=1
          Length = 391

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 90/400 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+    KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +DV  G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
             ++LG+  +++R++++ K TL     V+S  +   +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T  G FI +   +D  V +S LS  +V++PE+   IG+ V  +
Sbjct: 188  LQSLNEGDVIHGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            + S++  ++R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIHGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N +++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1431
            E L  N I++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +V  ++P + RV ++ K  +       +   L +L+ GD++ G++ R+  +G FI I
Sbjct: 157  KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDI 213


>sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252)
           GN=rpsA PE=3 SV=1
          Length = 391

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L + +L    SY+   ++L    I    +T++ K G  V    G
Sbjct: 71  VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184

Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G +   ++  +D ++  + LS K +L    + +       H N  + G V  +   G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDDIEGVVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    GQ V   IL ++ E  R++LS+K + 
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G     
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69

Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
                EFD+    +NE+   +LS +        QL ++ S+      +  N ++   V  
Sbjct: 70  YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
                  DA           K  +LQS                G VI+GKV     FG  
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210

Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +       V G +        H Q     V  G  ++  I  + +    + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 168/404 (41%), Gaps = 90/404 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
           ++EG  +T  V+ +ED   ++H     F G +P + L+ +  ID     VK G  ++  V
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71

Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
                             R ++  +   YL    D    +   VT+ +KG + +D+    
Sbjct: 72  TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
            VP  ++ST           +   + F G      ++   P  N             R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169

Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               + +AV    N      LL +      +  GD+ D  KV R+ +  G  +DI     
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
                V +S+++ E V+  E+    G  V+V+I    R  E ++  I     + FE +  
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            F  +D   G+VV+     + +FGA V+   GV+ L  +  ++   I  PG+  + G ++
Sbjct: 275 QFHENDDIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329

Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
             ++LG+  +++R++++ K TL     V+S  +   +Y E+ + 
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 92/204 (45%), Gaps = 34/204 (16%)

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            D   D +   ++EGD++ G+++++     G  + IG  + G VH +EL +  V  P    
Sbjct: 181  DAKKDQLLQSLNEGDVIDGKVARLTQF--GAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237

Query: 1307 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366
              GQ            VK K+  I R    T  + LS++ +L                TP
Sbjct: 238  SIGQD-----------VKVKIKSIDRD---TERISLSIKDTLP---------------TP 268

Query: 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1426
             ++++       N  ++G V  + + G F+ ++  +   V +S ++  ++ +P +    G
Sbjct: 269  FENIKG--QFHENDDIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPG 326

Query: 1427 KLVAGRVLSVEPLSKRVEVTLKTS 1450
            + V  ++L ++  ++RV +++K +
Sbjct: 327  QQVNVKILGIDEENERVSLSIKAT 350



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1431
            E L  N I++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1432 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +V  ++P + RV ++ K  +       +   L +L+ GD++ G++ R+  +G FI I
Sbjct: 157  KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDI 213


>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
           URRWXCal2) GN=rpsA PE=3 SV=1
          Length = 568

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 153/363 (42%), Gaps = 24/363 (6%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +  +   ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKK---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359

Query: 656 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
               +  E+ L+K      +G+++   +  +T   +  +V       G I    ++   +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDK 414

Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
              ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   
Sbjct: 415 GTDLLKSY-KKGDEIECKVLAINIEKEQVSLGVKQLSPNPYQEI---SDEYKKGTIVKAL 470

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
           +  + + G  V    ++ GF  R++  D +     + + + + + + ++ +   TGRI L
Sbjct: 471 ITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILL 530

Query: 829 SLK 831
           S+K
Sbjct: 531 SVK 533



 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 131/602 (21%), Positives = 245/602 (40%), Gaps = 103/602 (17%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V  E   ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDMVIVDV--GLKNEGRIPKSEFLALPEVGDVVEVFIE---KI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLDNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        E
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249

Query: 724  FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            F+Q     ++  D ++  + L  K    N  + +  +         + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKKMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                 +K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------IKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + +   
Sbjct: 400  MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGVKQLSPNPY--- 454

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
                        +E S +      V A++  VK++ L + L   N   G+   ++ + +K
Sbjct: 455  ------------QEISDEYKKGTIVKALITEVKDDGLEVLL--NNKVAGFIKRTELSDEK 500

Query: 1010 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 1065
              QK   F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G 
Sbjct: 501  DEQKPEMFKIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558

Query: 1066 LV 1067
            ++
Sbjct: 559  IL 560



 Score = 40.4 bits (93), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 121/287 (42%), Gaps = 41/287 (14%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKKMTGKVTNFADYGVFIELRDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
            ++ EK  + L ++  Q+   +  +  + +N       G I+   I  I     G+ V +G
Sbjct: 348  VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PVGTIIKAPIRNITDF--GIFVALG 397

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1342
             ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V L
Sbjct: 398  NNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QVSL 444

Query: 1343 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1402
             ++                   +P  + E  ++     IV+  +  V   G  ++L+ K+
Sbjct: 445  GVKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDDGLEVLLNNKV 487

Query: 1403 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
               +  + LSD   E   + F I + +  +V+S+E  + R+ +++K 
Sbjct: 488  AGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILLSVKA 534


>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613
           / Malish 7) GN=rpsA PE=3 SV=1
          Length = 568

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 153/361 (42%), Gaps = 20/361 (5%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
            IL+ S  E      S +K GMV++G V  +  +GA +   G V  L  L  +S   +  
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243

Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +      ++   V+    K+KRI++  K+       AI   +          G +T  
Sbjct: 244 PSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300

Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +G F+   +G++G    SE+  L     P     +GQ V+  ++       R++LS  
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360

Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
                P T+ +E++ V  G+++   +  +T   +  +V       G I    ++   +  
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416

Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
            ++KS  K G E + ++L ++ E   + L  K    N  Q++   +      ++V   + 
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            + + G  V    ++ GF  R++  D +     + + + + + + ++ +   TGRI LS+
Sbjct: 473 EVKDEGLEVLLNDKVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSV 532

Query: 831 K 831
           K
Sbjct: 533 K 533



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 131/600 (21%), Positives = 243/600 (40%), Gaps = 99/600 (16%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K   VVKG+VI + +   IV    G+K    +P      + + G   +V    + ++
Sbjct: 34   SHIKEKTVVKGQVIEIKNDIIIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88

Query: 554  LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             G   + I    K  K  +  +L I+ S  E  D  I  G +      G F    +GV  
Sbjct: 89   EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            F P S++ + P  +P+S+ ++ Q  K     + + +I  SRR  L       R      +
Sbjct: 143  FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
            K G ++ G V  +T     + +   G   G +   HL D     + H + +        +
Sbjct: 203  KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LD 249

Query: 724  FDQ---LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
            F+Q   ++V+  +  N  +S     ++S    P +A          + G V N  + G F
Sbjct: 250  FNQKVKVMVIKFDEKNKRISLGIKQLDSN---PWEAIKEEFPVGKQMTGKVTNFADYGVF 306

Query: 779  VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            +     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+KQ C   
Sbjct: 307  IELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                  QE+ L                  K+ E   +G++I+  +    DFG+ V+   +
Sbjct: 363  ------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399

Query: 898  SDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
             D  G I    ++          + + G  I+  +L +   +  V L +K +  + ++E 
Sbjct: 400  MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI 457

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
            +         +K    K L        I E+  E   VL   +    I    +SD   ++
Sbjct: 458  SDEY------KKGTIVKAL--------ITEVKDEGLEVLLNDKVAGFIKRTELSDEKDEQ 503

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGSLV 1067
             P+  F   + + A V+++  S+  GR+LL +KA  I+E + +  +     ++ ++G ++
Sbjct: 504  KPE-MFQIDKEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGDIL 560



 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G+++TG V    +    + +   L+  +   + ++  S  Q  ++   IG+ V   VL 
Sbjct: 289  VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
            ++ EK  + L ++  Q+            N  T   E + VG  I   +  +   G+ V 
Sbjct: 348  VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1340
            +G ++ G +H            +S  D+G  D L  Y +G  ++CKVL I+        V
Sbjct: 396  LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QV 442

Query: 1341 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400
             L ++                   +P  + E  ++     IV+  +  V  +G  ++L+ 
Sbjct: 443  SLGIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLND 485

Query: 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449
            K+   +  + LSD   E   + F I K +  +V+S+E  + R+ +++K 
Sbjct: 486  KVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSVKA 534


>sp|Q5HP69|RS1_STAEQ 30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC
           35984 / RP62A) GN=rpsA PE=3 SV=1
          Length = 392

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 721 G-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GEAVKVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+         ++    GQ V   IL ++ +  RI+LS+K +      
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 IESDASTTQSYL 368



 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG   ++  + +   S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSF 654
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 42.0 bits (97), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 45/237 (18%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     +  Y L  S +QL ++ S+      +  + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            DA          +K ++L S                G VI+GKV    +FG  +  
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI 213



 Score = 37.4 bits (85), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            ++ L+   ++ G V  +T+ G FI +   +D  V +S LS  +V++PE+   +G+ V  +
Sbjct: 188  LDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSVGEAVKVK 246

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            V SVE  S+R+ +++K     T      N     H  D++ G + R+ ++G F+ I
Sbjct: 247  VKSVEKDSERISLSIKD----TLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEI 298


>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
           pistaciae (strain Bp) GN=rpsA PE=3 SV=2
          Length = 566

 Score = 61.2 bits (147), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 7/162 (4%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G++V G V  +  +GA V   GGV  L  +  M+   +  P +   +G E+  ++L 
Sbjct: 189 LQEGLIVSGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILK 247

Query: 556 VKSKRITVTHK-KTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              ++I V+   K L       +S  Y E T   IT G +T +  +GCFV    GV+G  
Sbjct: 248 FDREKIRVSLGLKQLSDDPWTKISERYPEKTK--IT-GRVTNLTDYGCFVEIEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SE+   +    PS M  V  VVK  I+      RRI+L  
Sbjct: 305 HVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGL 346



 Score = 43.9 bits (102), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 113/531 (21%), Positives = 213/531 (40%), Gaps = 87/531 (16%)

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            +PG +++G V+A+     +V     +K+   +P + +F+  +   + KVG ++   +  +
Sbjct: 19   RPGSIIQGTVVAITKDTILVD--AKLKSESKIP-IDQFKNSQGELEVKVGDQIDVALDAI 75

Query: 557  KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            +         +   K   A L+      D     G I    K G  V   + ++ F P S
Sbjct: 76   EDGFGETLLSREKAKRHEAWLTLEQAYKDSKTVVGLINGKVKGGFTVELED-IRAFLPGS 134

Query: 617  ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
             + + P  E  +M+  G+ ++ +++      +++  SRR  +       R    + ++ G
Sbjct: 135  LVDIRPVRE--TMHLEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEG 192

Query: 671  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
             +VSG+V  +T     V +   G   G +    +A   ++H +    ++  G E   ++L
Sbjct: 193  LIVSGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNIGDEVKIKIL 246

Query: 729  VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIETGCFVRFLG 783
              D E   + L  K        QL  D     S  +P    + G V N+ + GCFV    
Sbjct: 247  KFDREKIRVSLGLK--------QLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEE 298

Query: 784  RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             + G    S+ +D    ++  SK   V   V+  ILD++ E  RI+L LKQ C ++    
Sbjct: 299  GVEGLVHVSE-MDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQ-CKNNPWME 356

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------ 895
            F               S K+N            GS + GK+    DFG+ +  E      
Sbjct: 357  F---------------SKKYNK-----------GSHVVGKIKSITDFGIFIGLEGSIDGL 390

Query: 896  -EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
               SD+   I+  + +    + G  + A +L V      + L +K +  D F +  S+ +
Sbjct: 391  VHLSDISWNISGEE-SVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKYVSSHK 449

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY-NHSIGYASVSD 1004
                               V+  ++ +  N +V+SL E+ +  I + ++SD
Sbjct: 450  K---------------GSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD 485



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 159/392 (40%), Gaps = 80/392 (20%)

Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSGI 272
           + L LET+QEG++++  VK++ D+G  +  G     G L   ++A           N G 
Sbjct: 182 RNLLLETLQEGLIVSGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNIGD 239

Query: 273 DVKPGLLLQGVVRSIDRTRKVV-----YLSSDPDT-VSKCVTKDLKGISIDLLVPGMMVS 326
           +VK  +L        DR +  V      LS DP T +S+   +  K            ++
Sbjct: 240 EVKIKIL------KFDREKIRVSLGLKQLSDDPWTKISERYPEKTK------------IT 281

Query: 327 TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 386
            RV ++ + G  +       G V +  +  T    +       +  V   IL +D   R 
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRR 341

Query: 387 VGLTL-----NPYLLHNRA--PPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
           + L L     NP++  ++     SHV  K+  I D           G+ + +     S  
Sbjct: 342 ISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITD----------FGIFIGLEG---SID 388

Query: 438 AYVTISDVA-----EEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGL 489
             V +SD++     EE V    KKYK+G  V   +L      E ++ GI  L+   F   
Sbjct: 389 GLVHLSDISWNISGEESV----KKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKY 444

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-----KPGKKFK 544
           V +H   K G +V G +  +D+   +V     +  L    ++S+ EI+     KP  K K
Sbjct: 445 VSSH---KKGSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD-EIMNVHDNKPWNKAK 500

Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
           +G E+V   L    K+  + +   L K +L I
Sbjct: 501 IG-EIVEVKLNSIDKKERIIYLSILEKQELKI 531



 Score = 36.2 bits (82), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E L   +IV G VKN+T  G F+ L   +D  + +++++   V+ P +   IG  V  +
Sbjct: 186  LETLQEGLIVSGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNIGDEVKIK 244

Query: 1433 VLSVEPLSKRVEVTLKT-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +L  +    RV + LK  SD      SE            + G++  +  YG F+ IE
Sbjct: 245  ILKFDREKIRVSLGLKQLSDDPWTKISE-----RYPEKTKITGRVTNLTDYGCFVEIE 297



 Score = 36.2 bits (82), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES--PEKEFPIGKLVAGRVLSVEPL 1439
            + G V N+T  GCF+ +   ++  V +S + D   ++  P K   +  +V   +L ++  
Sbjct: 280  ITGRVTNLTDYGCFVEIEEGVEGLVHVSEM-DWTNKNIHPSKMVQVNSVVKVMILDIDEE 338

Query: 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1491
             +R+ + LK   +    +         + G  V+G+IK +  +G+FI +E +
Sbjct: 339  RRRISLGLKQCKNNPWMEFS----KKYNKGSHVVGKIKSITDFGIFIGLEGS 386


>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
          Length = 429

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 29/266 (10%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
           GD  D +KV+   RG GL++D+       P S  A   +SD+ + + + ++ +  E    
Sbjct: 144 GDTVD-AKVINAVRG-GLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 201

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
             R++  R     A    + +A    VF+   V  G VV+G V  +  FGA V   GGV 
Sbjct: 202 NARLILSRK----AVAAQELAAQLAEVFSKLSV--GEVVEGTVARLTDFGAFVDL-GGVD 254

Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYA 581
            L  +  +S   +  P      G ++  ++L + ++  RI+++ K T           + 
Sbjct: 255 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQ-------RGPWD 307

Query: 582 EATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
           EA D++    +  G + +++  G FV    G++G    S++       PS +   G  V+
Sbjct: 308 EAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQ 367

Query: 638 CRIMSSIPASRRINLSFMM---KPTR 660
            +++   PA  RI+LS      KP R
Sbjct: 368 VKVLDIKPAEERISLSMKALEEKPER 393



 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 135/355 (38%), Gaps = 52/355 (14%)

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
             V    G +G  P  E   D     +    +G  ++  ++S++ + +   +++++   R
Sbjct: 71  AVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVISNVTSDKE-GVAYLLSKKR 129

Query: 661 VSEDDLVKLGSLVSG-VVDVVTPNAVVVYVIA-----KGYSKGTIPTEHLADHLEHATVM 714
           +      +  S   G  VD    NAV   +I      +G+   ++  E     L      
Sbjct: 130 LDARKAWENLSFAEGDTVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQ--FK 187

Query: 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNII 773
              IK      Q++ +D  ++ L+LS K           ++  S +    VV G V  + 
Sbjct: 188 NKDIKA-----QVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLT 242

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G FV  LG + G    S+    +  + +     G  V   IL +++E GRI+LS+K +
Sbjct: 243 DFGAFVD-LGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKAT 301

Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                D +  Q                              GSV+EG V    DFG  V 
Sbjct: 302 QRGPWDEAADQ---------------------------IAAGSVLEGTVKRVKDFGAFV- 333

Query: 894 FEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTV 941
            E    + G +   Q++   +E       SG  +Q  +LD+  AE  + LS+K +
Sbjct: 334 -EILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKAL 387



 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 32/351 (9%)

Query: 496 VKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG----AELV 550
           +K G VV G+++A+D+   A+V    G + + P    S+   +    + K+G    A ++
Sbjct: 52  IKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVI 111

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
             V   K     +  KK L   K     S+AE     +    I  +   G  +   NGV+
Sbjct: 112 SNVTSDKEGVAYLLSKKRLDARKAWENLSFAEGD--TVDAKVINAV--RGGLIVDVNGVR 167

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 666
           GF P S +      + +   +  + +K +++   PA+ R+ LS      +     L    
Sbjct: 168 GFVPASMVAERFVSDLNQFKN--KDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVF 225

Query: 667 --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             + +G +V G V  +T     V +   G   G +    ++ D +++      V+  G +
Sbjct: 226 SKLSVGEVVEGTVARLTDFGAFVDL---GGVDGLVHVSEISHDRVKNPA---DVLTKGDK 279

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVR 780
            D ++L LD E   + LS     I + Q+ P D  A  I   SV+ G V  + + G FV 
Sbjct: 280 VDVKILALDTEKGRISLS-----IKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVE 334

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            L  + G    S+  + +  + S+    G  V+  +LD+     RI+LS+K
Sbjct: 335 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMK 385



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 185/433 (42%), Gaps = 67/433 (15%)

Query: 1047 TETSSSKRAKKKSSYD---VGSLVQAEITEI-KPLELRLKFGIGFHGRIHITEVNDDKSN 1102
            +ET++   A  +S+ D   VG +V  E+  I    +  +    G  G +   E +DD+ N
Sbjct: 35   SETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDR-N 93

Query: 1103 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
            +  NL    KIG T+ A +I  SN    K+   + LS K   L   +    L F E D  
Sbjct: 94   I--NLADELKIGDTIEAVVI--SNVTSDKEGVAYLLSKK--RLDARKAWENLSFAEGDTV 147

Query: 1163 IGQRVT----GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
              + +     G +  V+     +  S  + A+ F+       S+L +F+      K +  
Sbjct: 148  DAKVINAVRGGLIVDVNGVRGFVPAS--MVAERFV-------SDLNQFKN-----KDIKA 193

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             V+ I+      RL+L   +  ++ + +      + + +  G++V G ++++     G  
Sbjct: 194  QVIEIDPANA--RLILS--RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDF--GAF 247

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
            V +G  + G VH +E+ +  V +P         D L+   +G  V  K+L +  T +G  
Sbjct: 248  VDLG-GVDGLVHVSEISHDRVKNPA--------DVLT---KGDKVDVKILALD-TEKG-- 292

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             + LS++++                   G   E  + ++   +++G VK V   G F+ +
Sbjct: 293  RISLSIKAT-----------------QRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI 335

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1458
               ++  V +S +S+  +E+P +    G  V  +VL ++P  +R+ +++K  + +   + 
Sbjct: 336  LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERED 395

Query: 1459 EINNLSNLHVGDI 1471
               N  +    DI
Sbjct: 396  RRGNDGSASRADI 408



 Score = 40.4 bits (93), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            LS   +V+G V  +T  G F+ L   +D  V +S +S   V++P      G  V  ++L+
Sbjct: 228  LSVGEVVEGTVARLTDFGAFVDLG-GVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILA 286

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            ++    R+ +++K +      ++       +  G ++ G +KRV+ +G F+ I
Sbjct: 287  LDTEKGRISLSIKATQRGPWDEAA----DQIAAGSVLEGTVKRVKDFGAFVEI 335


>sp|P56008|RS1_HELPY 30S ribosomal protein S1 OS=Helicobacter pylori (strain ATCC 700392
           / 26695) GN=rpsA PE=3 SV=1
          Length = 556

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 162/400 (40%), Gaps = 62/400 (15%)

Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           K +  +V++KK + + K+ A +    E  +  I  G I    K G  V    GV+ F  R
Sbjct: 90  KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 148

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
           S   L      +   H+G+ VK  I+     +  IN+S    F +   R  E   +L++ 
Sbjct: 149 SHSSL-----KNDANHIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 203

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
              V GVV  +TP  +  +V AKG  +G +   H ++      V  +   K G E + + 
Sbjct: 204 TEPVLGVVRQITPFGI--FVEAKGI-EGLV---HYSEISHKGPVNPEKYYKEGDEVYVKA 257

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  D E   L LS K ++ +  +++      + P   +   V NI   G FV     + G
Sbjct: 258 IAYDAEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 314

Query: 788 FAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           F   S+    +       Y  VGQ +   I+D++ +  R+ +SLKQ      D       
Sbjct: 315 FLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD------- 367

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                    +  SKH            +G V+EGKV    DFG  ++      V G + +
Sbjct: 368 ---------VFESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 404

Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H       +      + G VI+  IL + K ++ + LS K
Sbjct: 405 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 444



 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 129/298 (43%), Gaps = 38/298 (12%)

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSK 559
           V G V  +  FG  V+   G++ L     +S    V P K +K G E+  + +    + +
Sbjct: 207 VLGVVRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKR 265

Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGW-----ITKIEKHGCFVRFYNGVQGFAP 614
           R++++ K T       I   + E  D+L   G+     ++ IE +G FV   N ++GF  
Sbjct: 266 RLSLSIKAT-------IEDPWEEIQDKL-KPGYAIKVVVSNIEHYGVFVDIGNDIEGFLH 317

Query: 615 RSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLG 670
            SE+  D     P++   VGQ +  +I+   P +RR+ +S      +P  V E    ++G
Sbjct: 318 VSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKH-QVG 376

Query: 671 SLVSGVVDVVTPNAVVVYV-----IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
            ++ G V  +T     + +     +   +       +   DH +   V+K          
Sbjct: 377 DVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKV--------- 427

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           ++L ++ +   + LSAK+ + +  ++    A     +SV+ G V +I + G F+   G
Sbjct: 428 KILKINKKDKKISLSAKHLVTSPTEEF---AQKHKTDSVIQGKVVSIKDFGVFINADG 482



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 123/288 (42%), Gaps = 61/288 (21%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            HIGK V   ++ ++KE   + +  + F +    + +++S + ++                
Sbjct: 159  HIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 203

Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
               V G+V QI P         + G VH++E+ +           +G  +P   Y EG  
Sbjct: 204  TEPVLGVVRQITPFGIFVEAKGIEGLVHYSEISH-----------KGPVNPEKYYKEGDE 252

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1381
            V  K +      R    + LS++++               ++ P    E+I+D L P   
Sbjct: 253  VYVKAIAYDAEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 291

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++  V N+   G F+ +   ++  + +S +S D  V  P     +G+ +  +++ ++P +
Sbjct: 292  IKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKN 351

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ V+LK   +R     E    S   VGD++ G++  +  +G F+ +
Sbjct: 352  RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNL 395



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 26/249 (10%)

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
           D L PG  +   V +I   GV +       G + +  +      ++  N  +  ++++ +
Sbjct: 284 DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVK 343

Query: 377 ILFVDPTSRAVGLTLNPYLLHNR---APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
           I+ +DP +R + ++L    L NR      S  +VGD+ +       D G  L L      
Sbjct: 344 IIDIDPKNRRLRVSLKQ--LTNRPFDVFESKHQVGDVLEGKVATLTDFGAFLNLG----- 396

Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE---GLATGILKASAFEGLV 490
                 +   D   ++ +K +  YK G  ++V+IL     +    L+   L  S  E   
Sbjct: 397 -GVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFA 455

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAE 548
             H   K   V++GKV+++  FG  +   G       +  + + E + P KK   K+G E
Sbjct: 456 QKH---KTDSVIQGKVVSIKDFGVFINADG-------IDVLIKNEDLNPLKKDEIKIGQE 505

Query: 549 LVFRVLGVK 557
           +   V+ ++
Sbjct: 506 ITCVVVAIE 514


>sp|Q9ZKF6|RS1_HELPJ 30S ribosomal protein S1 OS=Helicobacter pylori (strain J99)
           GN=rpsA PE=3 SV=1
          Length = 552

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 158/400 (39%), Gaps = 62/400 (15%)

Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           K +  +V++KK + + K+ A +    E  +  I  G I    K G  V    GV+ F  R
Sbjct: 86  KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
           S   L      +   H+G+ +K  I+     +  IN+S    F +   R  E   +L++ 
Sbjct: 145 SHSSL-----KNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA 199

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
              V GVV  +TP  + V        KG     H ++      V  +   K G E + + 
Sbjct: 200 TEPVLGVVRQITPFGIFVKF------KGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 253

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  D E   L LS K ++ +  +++      + P   +   V NI   G FV     + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 310

Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           F   S+ + D   +  S    VGQ +   I+D++ +  R+ +SLKQ      D       
Sbjct: 311 FLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVF----- 365

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                       SKH            +G ++EGKV    DFG  ++      V G + +
Sbjct: 366 -----------ESKHQ-----------VGDIVEGKVATLTDFGAFLNL---GGVDGLLHN 400

Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H       +      + G VI+  IL + K ++ + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 440



 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 123/288 (42%), Gaps = 61/288 (21%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            HIGK +   ++ ++KE   + +  + F +    + ++IS + ++                
Sbjct: 155  HIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA--------------- 199

Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1322
               V G+V QI P         + G VH++E+ +           +G  +P   Y EG  
Sbjct: 200  TEPVLGVVRQITPFGIFVKFKGIDGLVHYSEISH-----------KGPVNPEKYYKEGDE 248

Query: 1323 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1381
            V  K +      R    + LS++++               ++ P    E+I+D L P   
Sbjct: 249  VYVKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 287

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1440
            ++  V N+   G F+ +   ++  + +S +S D  V  P     +G+ +  +++ ++P +
Sbjct: 288  IKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKN 347

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ V+LK   +R     E    S   VGDIV G++  +  +G F+ +
Sbjct: 348  RRLRVSLKQLTNRPFDVFE----SKHQVGDIVEGKVATLTDFGAFLNL 391



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 7/203 (3%)

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
           EK YKEG  V V+ + +   +   +  +KA+  +        +KPG  +K  V  ++ +G
Sbjct: 240 EKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYG 299

Query: 514 AIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570
             V     ++    +  +S +  +  P     VG E+  +++ +  K++R+ V+ K+ L 
Sbjct: 300 VFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LT 358

Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
                +  S  +  D  I  G +  +   G F+    GV G     +   D   +    Y
Sbjct: 359 NRPFDVFESKHQVGD--IVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHY 415

Query: 631 HVGQVVKCRIMSSIPASRRINLS 653
            +G V+K +I+      ++I+LS
Sbjct: 416 KIGDVIKVKILKINKKDKKISLS 438


>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
           BAA-255 / R6) GN=rpsA PE=1 SV=1
          Length = 400

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 153/366 (41%), Gaps = 41/366 (11%)

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
           FE L+ + S V+ G VV  +V+ VD+  A V   G GV+ +  L  ++        + VK
Sbjct: 4   FEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVK 63

Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            G+   V   LV R V+G  +  +T    K  ++++ A         + +   G  T+  
Sbjct: 64  VGEVLDV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 656
           K G  V F  GV+GF P S L  D     ++   VGQ    +I        R  LS   +
Sbjct: 119 KGGLSVEF-EGVRGFIPASML--DTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREV 175

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-- 714
                +       G L  G  DVVT        +A+  S G        D L H T +  
Sbjct: 176 VEAATAAARAEVFGKLAVG--DVVTGK------VARITSFGAFIDLGGVDGLVHLTELSH 227

Query: 715 ------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 765
                 KSV+  G E + ++L L+ E   + LS K ++       P D     +    VV
Sbjct: 228 ERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPG-----PWDGVEQKLAKGDVV 282

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V  + + G FV  L  + G    S+    +  +  +   VGQ V+  +L+VN++  R
Sbjct: 283 EGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAER 342

Query: 826 ITLSLK 831
           ++LS+K
Sbjct: 343 VSLSIK 348



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 6/169 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  + SFGA +   GGV  L  L  +S    V P     VG E+  ++L +  
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNE 252

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R++++ K T+      +    A+     +  G + ++   G FV    G+ G    S
Sbjct: 253 EEGRVSLSLKATVPGPWDGVEQKLAKGD---VVEGTVKRLTDFGAFVEVLPGIDGLVHVS 309

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           ++       P     VGQ V+ +++     + R++LS      R ++++
Sbjct: 310 QISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEE 358



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 34/198 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            GD+V G++++I S   G  + +G  + G VH TEL +           E    P S    
Sbjct: 194  GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
            G+ ++ K+L+++        V LSL++++ G               P   +E  + L+  
Sbjct: 240  GEEIEVKILDLNEE---EGRVSLSLKATVPG---------------PWDGVE--QKLAKG 279

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +V+G VK +T  G F+ +   +D  V +S +S   +E+P++   +G+ V  +VL V   
Sbjct: 280  DVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNAD 339

Query: 1440 SKRVEVTLKTSDSRTASQ 1457
            ++RV +++K  + R A +
Sbjct: 340  AERVSLSIKALEERPAQE 357



 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 144/372 (38%), Gaps = 64/372 (17%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           GV+G     EL  D   + +    VG+V+   ++  +       +++++   R+      
Sbjct: 40  GVEGVLTLRELTNDRDADINDFVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARK-- 97

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKPG 721
               LV    +VVT        +  G S      +G IP    A  L+   V  +    G
Sbjct: 98  AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGVRGFIP----ASMLDTRFVRNAERFVG 151

Query: 722 YEFDQLLVLDNESSN-LLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFV 779
            EFD  +   N   N  +LS +  +  +     ++    +    VV G V  I   G F+
Sbjct: 152 QEFDTKIKEVNAKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSFGAFI 211

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             LG + G    ++    +         VG+ +   ILD+N E GR++LSLK +     D
Sbjct: 212 D-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPGPWD 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                    +E+K+A                    G V+EG V    DFG  V  E    
Sbjct: 271 G--------VEQKLAK-------------------GDVVEGTVKRLTDFGAFV--EVLPG 301

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREANS 951
           + G +   Q++   +E+       G  +Q  +L+V A AER V LS+K         A  
Sbjct: 302 IDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAER-VSLSIK---------ALE 351

Query: 952 NRQAQKKKRKRE 963
            R AQ++ +K E
Sbjct: 352 ERPAQEEGQKEE 363



 Score = 40.8 bits (94), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435
            L+   +V G V  +TS G FI L   +D  V L+ LS     SP+    +G+ +  ++L 
Sbjct: 191  LAVGDVVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILD 249

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +     RV ++LK +        E      L  GD+V G +KR+  +G F+ +
Sbjct: 250  LNEEEGRVSLSLKATVPGPWDGVE----QKLAKGDVVEGTVKRLTDFGAFVEV 298


>sp|P71353|Y568_HAEIN Uncharacterized protein HI_0568 OS=Haemophilus influenzae (strain
            ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0568 PE=4 SV=1
          Length = 762

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            +E+I DL   MI++G V NVT+ G F+ +    D  V +S+LSD +VE P +    G +V
Sbjct: 642  VEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIV 701

Query: 1430 AGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1459
              +VL V+   KR+ +T++  +S   + S+
Sbjct: 702  KVKVLEVDVPRKRIALTMRLDESAVKNDSK 731



 Score = 34.7 bits (78), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
           G  K + F   V   +D+K GM+++G V  V +FGA V        L  +  +S+  +  
Sbjct: 631 GEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVED 690

Query: 539 PGKKFKVGAELVFRVL--GVKSKRITVTHK 566
           P +  K G  +  +VL   V  KRI +T +
Sbjct: 691 PHQVVKTGNIVKVKVLEVDVPRKRIALTMR 720


>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 /
           Nine Mile phase I) GN=rpsA PE=1 SV=1
          Length = 551

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 195/485 (40%), Gaps = 85/485 (17%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            T +D++PG +VK  V+ V     IV    G+K+   +P  SEF   +P     VG E  
Sbjct: 13  LTETDLRPGALVKATVVEVRPDRVIVN--AGLKSEGIIP-ASEFRNEEP----HVGDEF- 64

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK---IEK-HGCFVRFY 606
           F V+         T    L + K     +++E  ++    G + K   IE+  G F    
Sbjct: 65  FVVIEASDNGFGETR---LSREKARRAKAWSE-LEKAYKAGEMVKGVIIERVKGGFTVDL 120

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTR 660
           N V+ F P S + + P  +P   Y   + +  +I+      +++  SRR  +       R
Sbjct: 121 NSVRAFLPGSLVDVKPVRDPG--YLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAER 178

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
            +  + ++ G  + GV+  +T     V +   G   G +    +A   ++H + + +V  
Sbjct: 179 QARLEELQEGQEIKGVIKNITDYGAFVDL---GGVDGLLHITDMAWGRVKHPSDLLNV-- 233

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNII 773
            G E   ++L  D +   + L  K        QL  D        +P NS V G V NI 
Sbjct: 234 -GDEVHVKVLKFDRDKKRVSLGMK--------QLADDPWAKIERRYPVNSRVFGKVTNIT 284

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + GCFV+    + G    S+ +D    ++  SK    G+ V   +L+++ E  RI+L +K
Sbjct: 285 DYGCFVKLEEGVEGLVHTSE-LDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIK 343

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
           Q C  +    F ++H   +EKI                          GKV    DFG+ 
Sbjct: 344 Q-CKRNPWQEFAEKH-EKDEKIT-------------------------GKVRSITDFGMF 376

Query: 892 VSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
           +  E   D+ G +    ++            + G  +QA IL +      + L +K +  
Sbjct: 377 IGLE--GDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEG 434

Query: 944 DRFRE 948
           D F E
Sbjct: 435 DPFME 439



 Score = 43.5 bits (101), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 1362 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1421
            + +T  +   ++E+L     ++G +KN+T  G F+ L   +D  + +++++ G V+ P  
Sbjct: 171  EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLG-GVDGLLHITDMAWGRVKHPSD 229

Query: 1422 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1481
               +G  V  +VL  +   KRV + +K       ++ E        V   V G++  +  
Sbjct: 230  LLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIE----RRYPVNSRVFGKVTNITD 285

Query: 1482 YGLFITIE 1489
            YG F+ +E
Sbjct: 286  YGCFVKLE 293



 Score = 35.4 bits (80), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 1372 KIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGK 1427
            KIE   P N  V G V N+T  GCF+ L   ++  V  S L   +      P K    G+
Sbjct: 265  KIERRYPVNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELD--WTNKNIHPSKVVQSGE 322

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD-IVIGQIKRVESYGLFI 1486
             V   VL ++   +R+ + +K        ++     +  H  D  + G+++ +  +G+FI
Sbjct: 323  EVEVMVLEIDEERRRISLGIK-----QCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFI 377

Query: 1487 TIE 1489
             +E
Sbjct: 378  GLE 380


>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
            GN=rpsA PE=3 SV=1
          Length = 572

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 135/608 (22%), Positives = 247/608 (40%), Gaps = 112/608 (18%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +KPG VVKG+V+ ++    +     G+K    +P  SEF ++ P  K     +LV   
Sbjct: 34   SHIKPGTVVKGQVVDINEVVVVDV---GLKNEGRIPK-SEF-LLSPAHKLPEIGDLV--- 85

Query: 554  LGVKSKRITVTHKKTLVKSK---------LAILSSYAEATDRLITHGWITKIEKHGCFVR 604
              V  ++      KTL + K         L ++ S  E  D  I  G +      G F  
Sbjct: 86   -DVYIEKTEGHSGKTLSREKAIKEELWGQLELICSKGEFVDGTI-FGRV-----KGGFTV 138

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTR 660
              +GV  F P S++ + P  +PSS+ ++ Q  K     + + +I  SRR  L       R
Sbjct: 139  DLSGVVAFLPGSQVDVRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEAR 198

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKS 716
                  +K G ++ G V  +T     + +   G   G +   HL D     + H + +  
Sbjct: 199  DEMLSKIKEGMILEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWARVNHPSEV-- 250

Query: 717  VIKPGYEFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
                  EF+Q     ++  + E+  + L  K    N  +++  +         + G V N
Sbjct: 251  -----LEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIKEE---FPVGKKMTGKVTN 302

Query: 772  IIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
              + G F+     L G    S+ +      +  KT  +GQ V   +L+V++E  R++LS+
Sbjct: 303  FADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSI 362

Query: 831  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
            KQ  C        Q++ L+                 K+ E   +G+VI+  +    DFG+
Sbjct: 363  KQ--C--------QQNPLI-----------------KFAETNPVGTVIKAPIRNITDFGI 395

Query: 891  VVSFEEHSDVY---GFITHHQLAGA---TVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
             V+  ++ D     G IT          T + G  ++  +L +   +  + L +K +  +
Sbjct: 396  FVALSDNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQISLGIKQLTPN 455

Query: 945  RFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 1003
             ++  A+  ++    K    A KD G+   VN                  + + G+   S
Sbjct: 456  PYQGIADEYKKGTVVKAVVTAIKDDGLEVLVN------------------DKAAGFIKKS 497

Query: 1004 DYNTQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKS 1059
            D + +K  QK   F   Q + A V ++  S+   ++LL +KA  I+E + +  +     +
Sbjct: 498  DLSDEKEEQKPEMFAVDQEIEAKVASIEKSTN--KILLSIKAYKIAERQKALKEYGSSDN 555

Query: 1060 SYDVGSLV 1067
            + ++G ++
Sbjct: 556  TTNMGDIL 563


>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
           10987) GN=BCE_1625 PE=3 SV=1
          Length = 382

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIAGEVKAGD--IREGIVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS     +   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEENNVTED 354



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1420
             +++   K  E I  L    +V+G V+ +T  G F+ +   +D  V +S +S   VE P 
Sbjct: 171  VELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPS 229

Query: 1421 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1480
            +    G+ V  +VLSV+  ++R+ +++K +          N    +  GDI  G +KR+ 
Sbjct: 230  EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIAGEVKAGDIREGIVKRLV 285

Query: 1481 SYGLFITI 1488
            ++G F+ I
Sbjct: 286  TFGAFVEI 293



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1312 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1371
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1372 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1431
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  IAGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1432 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1479
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEAFEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 142/367 (38%), Gaps = 52/367 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 643
           +  G +TK+E+    V       G  P SEL      + S +  + Q+++ +I+    + 
Sbjct: 20  VVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQILELKIIKLEEND 79

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
           +  S+R   +   +   +   +    G +    V  +    +VV +  +G+   ++   H
Sbjct: 80  LVLSKR---AVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDLGVRGFIPASLVEVH 136

Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
             +           +K       ++ LD E + ++LS K  +         +A S +   
Sbjct: 137 YVEDFTDYKGKTLAVK-------IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEG 189

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            VV G V  + + G FV  +G + G    S+    +    S+    GQ V+  +L V+++
Sbjct: 190 DVVEGTVQRLTDFGAFVN-VGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDAD 248

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
           T RI+LS+K +                 E IA          E+K       G + EG V
Sbjct: 249 TQRISLSIKAAQPGPW------------ENIA---------GEVK------AGDIREGIV 281

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 935
                FG  V       V G +   Q+A   V       E G  ++  +L+V  AE+ + 
Sbjct: 282 KRLVTFGAFVEI--LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRIS 339

Query: 936 LSLKTVF 942
           LS+K  F
Sbjct: 340 LSIKEAF 346



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 148/355 (41%), Gaps = 29/355 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQIL 68

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEENDLVLS--KRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 663
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 721
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
            +   ++L +D ++  + LS     I +AQ  P +  A  +    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGAF 290

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEA 345


>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
           BAA-98 / CGA009) GN=rpsA PE=1 SV=1
          Length = 565

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 147/357 (41%), Gaps = 42/357 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            +++ G V+ G V  +  +GA V   GG+  L  +  ++   +  P +   +G  +  ++
Sbjct: 196 QNLEEGQVIDGVVKNITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKI 254

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNG 608
           + +  ++ RI++  K+ L      I + Y   A  T R      +T I  +G FV    G
Sbjct: 255 IKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGR------VTNITDYGAFVELEPG 308

Query: 609 VQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSED 664
           ++G    SE+        P  +    Q V+ +++      RRI+L     M  P  V  +
Sbjct: 309 IEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVE 368

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI---------PTEHLADHLEHATVMK 715
               +GS V G  +V       +++   G   G +         P E + D+ +   ++K
Sbjct: 369 KH-PVGSTVEG--EVKNKTEFGLFLGLDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVK 425

Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           +V+         L +D E   + L  K  L       P D   +   +VV   V ++ E+
Sbjct: 426 AVV---------LDVDVEKERISLGVK-QLEGDPFAEPGD---VKKGAVVTCEVLDVKES 472

Query: 776 GCFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G  V+ +G     F  RS+    +    S  + VG+ V + ++  + +  ++ +S+K
Sbjct: 473 GIDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQFDKKARKVQVSIK 529



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 103/485 (21%), Positives = 188/485 (38%), Gaps = 81/485 (16%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK--KFKVG-- 546
           F   +++   V+KGKV+A++   A++      +   PL      E   PG+  + KVG  
Sbjct: 22  FAGGNLQESSVIKGKVVAIEKDMAVIDVGLKTEGRVPLR-----EFAGPGRDNEIKVGDT 76

Query: 547 AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
            E+    +        ++  K   +     L    +  +++     +   +  G F    
Sbjct: 77  VEVFLDRIENALGEAVLSRDKARREESWGKLEKAFQNNEKVFG---VIFNQVKGGFTVDL 133

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVS 662
           +G   F PRS++ + P  + + + +  Q  +     R   +I  SRR  L       R  
Sbjct: 134 DGAVAFLPRSQVDIRPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQE 193

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLADHLEHATV 713
               ++ G ++ GVV  +T     V         +V    + +   PTE L       TV
Sbjct: 194 LVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLT---IGQTV 250

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNI 772
              +IK          +++E+  + L  K  L +  Q + +     +P N+   G V NI
Sbjct: 251 KVKIIK----------INHETHRISLGMKQLLDDPWQGIEAK----YPLNARFTGRVTNI 296

Query: 773 IETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G FV     + G    S+ +   +     K     Q V   +L+V+S   RI+L LK
Sbjct: 297 TDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLK 356

Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
           Q+  +  +  F+++H                           +GS +EG+V    +FG+ 
Sbjct: 357 QTMRNPWEV-FVEKH--------------------------PVGSTVEGEVKNKTEFGLF 389

Query: 892 VSFEEHSDVYGFI----THHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFI 943
           +  +   DV G +       +L G  V    + G +++A +LDV   +  + L +K +  
Sbjct: 390 LGLD--GDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEG 447

Query: 944 DRFRE 948
           D F E
Sbjct: 448 DPFAE 452



 Score = 51.2 bits (121), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 95/446 (21%), Positives = 171/446 (38%), Gaps = 83/446 (18%)

Query: 726  QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            Q+L +D    N+++S +  L  + A+Q      ++    V+ G V NI + G FV  LG 
Sbjct: 164  QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVD-LGG 222

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    +     +    ++   +GQ+V+  I+ +N ET RI+L +KQ            
Sbjct: 223  IDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQ------------ 270

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
                       L      G E K    + + +   G+V    D+G  V  E       H 
Sbjct: 271  -----------LLDDPWQGIEAK----YPLNARFTGRVTNITDYGAFVELEPGIEGLIHV 315

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT-------VFIDRFREANS 951
                +   +   G  V +   ++  +L+V   +R + L LK        VF+++      
Sbjct: 316  SEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKH----- 370

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
                              V  TV   V+   E  L L L       G   +SD +  K P
Sbjct: 371  -----------------PVGSTVEGEVKNKTEFGLFLGLD--GDVDGMVHLSDLD-WKLP 410

Query: 1012 QKQ----FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLV 1067
             +Q    F  G  V A V+ +       R+ L +K +     +     KK      G++V
Sbjct: 411  GEQVIDNFKKGDMVKAVVLDVDVEKE--RISLGVKQLEGDPFAEPGDVKK------GAVV 462

Query: 1068 QAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1126
              E+ ++K   + ++  G  F+  I  +E+  D+++   + F+   +G+ V AR+I    
Sbjct: 463  TCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFA---VGEKVDARVIQFDK 519

Query: 1127 KPDMKKSFLWELSIKPSMLTVSEIGS 1152
            K    +  +  L +      +++ GS
Sbjct: 520  KARKVQVSIKALEVAEEKEAIAQYGS 545



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L    ++ G VKN+T  G F+ L   +D  + +++++   V  P +   IG+ V 
Sbjct: 193  ELVQNLEEGQVIDGVVKNITDYGAFVDLG-GIDGLLHVTDIAWRRVNHPTEVLTIGQTVK 251

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +++ +   + R+ + +K          E     N        G++  +  YG F+ +E
Sbjct: 252  VKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNAR----FTGRVTNITDYGAFVELE 306


>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
          Length = 580

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G  +   +L V 
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I + +   T   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G+ V  +++   P  ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546



 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 146/343 (42%), Gaps = 72/343 (20%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            +SIG+   G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHISEMSWVKNIV-------------DPSEVVNKGDEVEAIVL 361

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTERN--------PWDNIE--EKYPIGLHVNAEIKN 401

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGV 461

Query: 1448 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            K   S   ++ E    +    G ++ G + ++ ++G F+ ++N
Sbjct: 462  KQLSSNPWNEIE----AMFPAGTVISGVVTKITAFGAFVELQN 500



 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 141/354 (39%), Gaps = 32/354 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G   KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  
Sbjct: 220 GEYRKGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+ +  K+        I   Y      L   G I K+  +G F+    G++G    S
Sbjct: 279 EKGRVALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHIS 335

Query: 617 ELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 671
           E+       +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G 
Sbjct: 336 EMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTERNPWDNIEEKYPIGL 393

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ----- 726
            V+  +  +T      +V  +   +G I       H+   + +K V  P   F +     
Sbjct: 394 HVNAEIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVE 444

Query: 727 --LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             +L +D ES  + L  K    N   ++    +     +V+ G V  I   G FV     
Sbjct: 445 AVILSVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNG 501

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           + G    S+  D   A +     +G++V + ++ ++ +  +++LS+K+    + 
Sbjct: 502 IEGLIHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 95/477 (19%), Positives = 192/477 (40%), Gaps = 70/477 (14%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           + ++++PG ++KG V+ ++    +V    G+K+   +P MSEF  +   +   +GAE+  
Sbjct: 45  SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            +   + +  ++ ++ +K   + +   + ++ E     I  G IT+  K G  V    G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED--- 664
           + F P S++  D     +   +VG+V + +I+      R I +S   +++  R+S+    
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    GVV  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 38/232 (16%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
             EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y
Sbjct: 132  EEGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY 175

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
              G+  + K+L+I+   R   ++ +S R  L+    +  ++L             IE +S
Sbjct: 176  -VGKVCEFKILKINVERR---NIVVSRRELLEAERISKKAEL-------------IEQIS 218

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
                 +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+
Sbjct: 219  IGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVD 277

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
                RV + LK  +       E         G  V+G+I ++  YG FI IE
Sbjct: 278  KEKGRVALGLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIE 325



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 128/304 (42%), Gaps = 59/304 (19%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAVTG 1218
            G+RV G + K+    A + I   ++  + I + ++     +PSE+       + G  V  
Sbjct: 305  GKRVLGKIVKLLPYGAFIEIEEGIEGLIHISEMSWVKNIVDPSEV------VNKGDEVEA 358

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             VLSI K++  + L L+        +T     DN++     G  V   I K L+  G  V
Sbjct: 359  IVLSIQKDEGKISLGLK--------QTERNPWDNIEEKYPIGLHVNAEI-KNLTNYGAFV 409

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338
             ++ P + G +H +++  I          +    P   + +G  V+  +L + +  +   
Sbjct: 410  -ELEPGIEGLIHISDMSWI----------KKVSHPSELFKKGNSVEAVILSVDKESK--- 455

Query: 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398
             + L ++             LS++   P   +E +       ++ G V  +T+ G F+ L
Sbjct: 456  KITLGVKQ------------LSSN---PWNEIEAM--FPAGTVISGVVTKITAFGAFVEL 498

Query: 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--------S 1450
               ++  + +S LSD      E    IG+ V+ +V+ ++P  K+V +++K          
Sbjct: 499  QNGIEGLIHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNAYDQ 558

Query: 1451 DSRT 1454
            DSRT
Sbjct: 559  DSRT 562



 Score = 37.7 bits (86), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 127/585 (21%), Positives = 232/585 (39%), Gaps = 91/585 (15%)

Query: 664  DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            D+ ++ G+++ G V  +  + VVV V  K  S+G IP     D  E   +   V      
Sbjct: 46   DNEIQPGAILKGTVVDINKDFVVVDVGLK--SEGVIPMSEFIDSSEGLVLGAEV---EVY 100

Query: 724  FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
             DQ    ++E   ++LS + +     +Q     +H    S+V G +   ++ G  V    
Sbjct: 101  LDQA---EDEEGKVVLSREKA--TRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-- 153

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
             +  F P S+  + +  +L    YVG+     IL +N E   I +S ++           
Sbjct: 154  GMEAFLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVERRNIVVSRRE----------- 200

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EH 897
                L  E+I+         +EL  +E   IG   +G V    DFGV +  +        
Sbjct: 201  ---LLEAERIS-------KKAEL--IEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHI 248

Query: 898  SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
            +D+      H      VE    ++  IL V K +  V L LK       +E N     +K
Sbjct: 249  TDMTWKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEK 300

Query: 958  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 1013
            K    +        + +  IV+++     +    E    I G   +S+ +  K    P +
Sbjct: 301  KYPPGK--------RVLGKIVKLLPYGAFI----EIEEGIEGLIHISEMSWVKNIVDPSE 348

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
                G  V A V+++      G++ L LK   +TE +     ++K  Y +G  V AEI  
Sbjct: 349  VVNKGDEVEAIVLSIQKDE--GKISLGLK---QTERNPWDNIEEK--YPIGLHVNAEIKN 401

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            +      ++   G  G IHI++++  K   V +    FK G +V A I++   +      
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNSVEAVILSVDKES----- 454

Query: 1134 FLWELSIKPSMLTVSEIGSKLLFE-ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
                   K   L V ++ S    E E     G  ++G V K+    A + +   ++  + 
Sbjct: 455  -------KKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLIH 507

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            + + + +P    + +    IG+ V+  V+ ++ + K + L ++ +
Sbjct: 508  VSELSDKP--FAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEY 550


>sp|Q8RI52|ISPH_FUSNN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Fusobacterium
           nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
           101130 / JCM 8532 / LMG 13131) GN=ispH PE=3 SV=1
          Length = 827

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 203/502 (40%), Gaps = 81/502 (16%)

Query: 187 FHVGQLVSCIVLQL---DDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
           + VG  V  ++  L   DDD++ I   +RKI +      +      +T+ +  V T  +K
Sbjct: 345 YKVGDTVEVLITGLSEEDDDQEYITASRRKIEVEKNWEKIEDSFKNKTILDAKV-TKKIK 403

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK-PGLLLQGVVRSID------RTRKVV 294
                GY++   L  + GFLP N+L+E S  + K  G  +Q +V+ I       + RK+ 
Sbjct: 404 G----GYLVEAFL--YPGFLP-NSLSEISDSEEKVNGKKIQVIVKDIKMDPKDKKNRKIT 456

Query: 295 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
           Y   D     +   K+  G+++     G +V   V  +L+ G+ +   T   G + I   
Sbjct: 457 YSVKDIRLAEQ--EKEFAGLAV-----GQIVDCVVTEVLDFGLAVDINT-LKGFIHI--- 505

Query: 355 QNTFPTTNWK------NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP-PSHVKV 407
                  +WK      ++Y    K+ A ++ +D   R V L++        A   +  KV
Sbjct: 506 ----SEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEEDPWATVANEFKV 561

Query: 408 GD--------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
            D        +      V +  G+  L+ I S    T   V ++D             KE
Sbjct: 562 DDEIEGIVTKVLPYGAFVEIKPGVEGLVHI-SDFSWTKKKVNVADYV-----------KE 609

Query: 460 GSCVRVRILGFRHLEG--LATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
              ++VRI    H E   L  GI  L A+ +E       D     V+KGKV+ V  FG  
Sbjct: 610 REKIKVRITDL-HPEDRKLKLGIKQLVANPWET---AEKDFAIDTVIKGKVVEVKPFGIF 665

Query: 516 VQFPGGVKALCPLPHMSEFEIV-KPGKKFKVGAELVFRV--LGVKSKRITVTHKKTLVKS 572
           V+   G+ A     H S++  V +   KF++G E+  ++  L + +K+I  +  K L KS
Sbjct: 666 VEIADGIDAFV---HSSDYNWVGEEIPKFEIGNEVELKITELDLNNKKIKGSL-KALRKS 721

Query: 573 KLA-ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
                +  Y   T        I  +   G F+    G+ GF P      +        + 
Sbjct: 722 PWEHAMEEYKVGT---TVEKKIKTVADFGLFIELIKGIDGFIPTQFASKEFIKNIRDKFS 778

Query: 632 VGQVVKCRIMSSIPASRRINLS 653
            G VVK +++     +++I LS
Sbjct: 779 EGDVVKAQVVEVNKETQKIKLS 800



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 135/338 (39%), Gaps = 21/338 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-K 557
           G +V   V  V  FG  V     +K    +  +S   + K    +KVG ++   V+ + +
Sbjct: 477 GQIVDCVVTEVLDFGLAVDI-NTLKGFIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDE 535

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +KR      K L +   A +++  +  D +   G +TK+  +G FV    GV+G    S+
Sbjct: 536 AKRNVKLSIKKLEEDPWATVANEFKVDDEI--EGIVTKVLPYGAFVEIKPGVEGLVHISD 593

Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINL---SFMMKPTRVSEDDLVKLGSLV 673
                     +      + +K RI    P  R++ L     +  P   +E D   + +++
Sbjct: 594 FSWTKKKVNVADYVKEREKIKVRITDLHPEDRKLKLGIKQLVANPWETAEKDFA-IDTVI 652

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
            G V  V P  + V +     + G     H +D+     V + +  P +E    + L   
Sbjct: 653 KGKVVEVKPFGIFVEI-----ADGIDAFVHSSDY---NWVGEEI--PKFEIGNEVELKIT 702

Query: 734 SSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
             +L        + + ++ P + +       + V   +  + + G F+  +  + GF P 
Sbjct: 703 ELDLNNKKIKGSLKALRKSPWEHAMEEYKVGTTVEKKIKTVADFGLFIELIKGIDGFIPT 762

Query: 792 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             A      ++   +  G  V++ +++VN ET +I LS
Sbjct: 763 QFASKEFIKNIRDKFSEGDVVKAQVVEVNKETQKIKLS 800



 Score = 37.7 bits (86), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 128/301 (42%), Gaps = 54/301 (17%)

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
            FI  S      L +    + +G  +   V+S+++ K+ ++L ++  ++   D    ++N+
Sbjct: 502  FIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEE---DPWATVANE 558

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL----KNICVSDPLSGYD 1307
                     D + G ++K+L    G  V+I P + G VH ++     K + V+D +    
Sbjct: 559  -----FKVDDEIEGIVTKVLPY--GAFVEIKPGVEGLVHISDFSWTKKKVNVADYVK--- 608

Query: 1308 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1367
                       E + +K ++ ++    R    ++L ++                 V  P 
Sbjct: 609  -----------EREKIKVRITDLHPEDR---KLKLGIKQL---------------VANPW 639

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            +  EK  D + + +++G V  V   G F+ ++  +DA V  S+ +    E P  +F IG 
Sbjct: 640  ETAEK--DFAIDTVIKGKVVEVKPFGIFVEIADGIDAFVHSSDYNWVGEEIP--KFEIGN 695

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  ++  ++  +K+++ +LK         +    +    VG  V  +IK V  +GLFI 
Sbjct: 696  EVELKITELDLNNKKIKGSLKALRKSPWEHA----MEEYKVGTTVEKKIKTVADFGLFIE 751

Query: 1488 I 1488
            +
Sbjct: 752  L 752


>sp|P46837|YHGF_ECOLI Protein YhgF OS=Escherichia coli (strain K12) GN=yhgF PE=1 SV=3
          Length = 773

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query: 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1429
            +E + DL P MI++G V NVT+ G F+ +    D  V +S+LS+ +VE P      G +V
Sbjct: 642  VETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIV 701

Query: 1430 AGRVLSVEPLSKRVEVTLK 1448
              +VL V+   KR+ +T++
Sbjct: 702  KVKVLEVDLQRKRIALTMR 720



 Score = 37.7 bits (86), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
            K + F   V T +D++PGM+++G V  V +FGA V        L  +  +S   +  P 
Sbjct: 633 FKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPH 692

Query: 541 KKFKVGAELVFRVLGV--KSKRITVTHK 566
              K G  +  +VL V  + KRI +T +
Sbjct: 693 TVVKAGDIVKVKVLEVDLQRKRIALTMR 720


>sp|Q44653|RS1_BUCAP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis
           graminum (strain Sg) GN=rpsA PE=3 SV=1
          Length = 559

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G+ +KG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  ++L 
Sbjct: 189 LQEGIEIKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILK 247

Query: 556 VKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +R  V+   K+      +AI + Y E    +   G +T +  +GCFV    GV+G  
Sbjct: 248 FDKERTRVSLGLKQLGEDPWIAISNRYPEG---IKLSGRVTNLTDYGCFVEIEEGVEGLV 304

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SE+   +    PS +  V  +V   ++      RRI+L  
Sbjct: 305 HVSEMDWTNKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGL 346



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 125/308 (40%), Gaps = 42/308 (13%)

Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI--------THGWITKIE 597
           G EL F+V+ +  KR  V     +V  +  I S  +   D+L+          G +  + 
Sbjct: 149 GKELEFKVIKLDQKRNNV-----VVSRRAVIESENSAERDQLLESLQEGIEIKGIVKNLT 203

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
            +G FV    GV G    +++       PS + +VG  +  +I+       R++L     
Sbjct: 204 DYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGL--- 259

Query: 658 PTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 710
             ++ ED  + +      G  +SG V  +T     V +      +G     H+++    +
Sbjct: 260 -KQLGEDPWIAISNRYPEGIKLSGRVTNLTDYGCFVEI-----EEGVEGLVHVSEMDWTN 313

Query: 711 ATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQLPSDASHIHPNSV-VHG 767
             +  S +        ++VLD   E   + L  K   IN  Q+     S  H   + V G
Sbjct: 314 KNIHPSKVVAVNNIVDVIVLDIDEERRRISLGLKQCKINPWQEF----SETHKKGIHVSG 369

Query: 768 YVCNIIETGCFVRFLGRLTGF---APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
            + +I + G F+   G + G    +  S  + G+ A   K Y  G  + + +L V++E  
Sbjct: 370 KIKSITDFGIFIGLKGGIDGLVHLSDISWKISGEEA--VKNYKKGDEISAVVLQVDAERE 427

Query: 825 RITLSLKQ 832
           RI+L +KQ
Sbjct: 428 RISLGIKQ 435


>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC
           51907 / DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
          Length = 549

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL    
Sbjct: 192 GSEVKGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDK 250

Query: 559 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
            R  V+   K L +   A ++       +L   G +T +  +GCFV   +GV+G    SE
Sbjct: 251 DRTRVSLGLKQLGQDPWAAIAENHPVNSKLT--GKVTNLTDYGCFVEILDGVEGLVHVSE 308

Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +   +    PS +  +G  V+  ++      RRI+L  
Sbjct: 309 MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGL 346



 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 59/365 (16%)

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
           G F    NGV+ F P S +   P  E   +  +G+ ++ +++      +++  SRR  + 
Sbjct: 118 GGFTVELNGVRAFLPGSLVDTRPAREADHL--LGKELEFKVIKLDQKRNNVVVSRRAVIE 175

Query: 654 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
                 R    + +  GS V GVV  +T     V +   G   G +    +A   ++H +
Sbjct: 176 SENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDL---GGVDGLLHITDMAWKRVKHPS 232

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVC 770
               ++  G E   ++L  D + + + L  K       Q   +  +  HP NS + G V 
Sbjct: 233 ---EIVNVGDEVTVKVLKFDKDRTRVSLGLK----QLGQDPWAAIAENHPVNSKLTGKVT 285

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITL 828
           N+ + GCFV  L  + G    S+ +D    ++  SK   +G +V   +L+++ E  RI+L
Sbjct: 286 NLTDYGCFVEILDGVEGLVHVSE-MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISL 344

Query: 829 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
            LKQ C ++    F               +  HN            G  + GK+    DF
Sbjct: 345 GLKQ-CKANPWTQF---------------ADTHNK-----------GDKVTGKIKSITDF 377

Query: 889 GVVVSFE-------EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
           G+ +  E         SD+   I+  + A    + G  + A +L V   +  + L +K +
Sbjct: 378 GIFIGLEGGIDGLVHLSDISWSISGEE-AVRQYKKGDEVSAVVLAVDAVKERISLGIKQL 436

Query: 942 FIDRF 946
             D F
Sbjct: 437 EEDPF 441



 Score = 40.4 bits (93), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 11/115 (9%)

Query: 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLS 1435
            N  + G V N+T  GCF+ +   ++  V +S +   +      P K   +G  V   VL 
Sbjct: 277  NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMD--WTNKNIHPSKVVSLGDTVEVMVLE 334

Query: 1436 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1489
            ++   +R+ + LK   +   +Q      ++ H  GD V G+IK +  +G+FI +E
Sbjct: 335  IDEERRRISLGLKQCKANPWTQ-----FADTHNKGDKVTGKIKSITDFGIFIGLE 384


>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain
           D/UW-3/Cx) GN=rpsA PE=3 SV=1
          Length = 569

 Score = 54.3 bits (129), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
              +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 145/343 (42%), Gaps = 72/343 (20%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1448 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            K        + E+       VG  + G + ++ ++G F+ ++N
Sbjct: 462  KQLTPNPWDEIEV----MFPVGSDISGVVTKITAFGAFVELQN 500



 Score = 42.4 bits (98), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471



 Score = 39.3 bits (90), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 38/232 (16%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
             EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y
Sbjct: 132  EEGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY 175

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
              G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++
Sbjct: 176  -VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQIT 218

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
                 +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+
Sbjct: 219  IGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVD 277

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
                RV + LK  +       E         G  V G+I ++  YG FI IE
Sbjct: 278  KEKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIE 325



 Score = 35.0 bits (79), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 137/378 (36%), Gaps = 66/378 (17%)

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             L LKQ           +EH   E+             E K    +  G  + GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316

Query: 887  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             +G  +  EE      H     ++ +       V  G  ++  +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQ 376

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
               + +                E    +G+  T   I  +      V   P     I  +
Sbjct: 377  TKHNPWDNI-------------EEKYPIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSS---TAGRLLLLLKAISETETSSSKRAKK 1057
             +S       P + F  G +V A ++++   S   T G   L      E E         
Sbjct: 423  DMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEVM------- 475

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
               + VGS +   +T+I      ++   G  G IH++E+++     +E++ S   IG  V
Sbjct: 476  ---FPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLS---IGDKV 529

Query: 1118 TARIIAKSNKPDMKKSFL 1135
            +A++I     PD KK  L
Sbjct: 530  SAKVIKLD--PDHKKVSL 545


>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
           acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
           LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
          Length = 642

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G VV+G+V  +  FGA V+   GV  L  +  +S   + KP    K+G ++   VL 
Sbjct: 481 LEEGQVVEGEVKRLTDFGAFVEIE-GVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLS 539

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  ++K+++++ KK        +   Y   +   +  G + +    G FV+   GV G  
Sbjct: 540 VDKENKKLSLSVKKLTENPWNNVEEKYPVGS---VVLGKVIRFADFGAFVKLEPGVDGLV 596

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SE+      +PS   +VG+ +K +I+      ++I LS 
Sbjct: 597 HISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637



 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 142/307 (46%), Gaps = 36/307 (11%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT-VDISNDNMQTFIHEGD 1261
            + E + + ++G +VTG ++ +++++  L +  +  +DG+  K+ +D    +++     GD
Sbjct: 299  IAENEGKIYVGASVTGEIIQVSEKEVFLNINYK--RDGVIPKSEIDDDGKDLKELFTVGD 356

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK---------NICVSDPLSGYDEGQFD 1312
             +  +I K+      +V+ +   L     + E+K         N+ V + + G     + 
Sbjct: 357  KIVAKIIKLKDADNYVVLSV-KELQREQGYKEIKEAFENKTTLNVVVKEDVKGGIIASYK 415

Query: 1313 PLSGYDEGQFVKC-KVLEISRTVRGTFHV---ELSLRSSLDGMSSTNSSDLSTDVDTPGK 1368
             +  +     V+   V  +   +  +F V   E S +     + ++  + LS       K
Sbjct: 416  GIRIFIPASHVELFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLS-------K 468

Query: 1369 HLEKIED-----LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
              EK+E+     L    +V+G VK +T  G F+ +   +D  + +S +S G VE P    
Sbjct: 469  EKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEI-EGVDGLLHVSEISWGRVEKPADVL 527

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESY 1482
             IG  +   VLSV+  +K++ +++K       +++  NN+   + VG +V+G++ R   +
Sbjct: 528  KIGDKIKVYVLSVDKENKKLSLSVK-----KLTENPWNNVEEKYPVGSVVLGKVIRFADF 582

Query: 1483 GLFITIE 1489
            G F+ +E
Sbjct: 583  GAFVKLE 589



 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 151/362 (41%), Gaps = 46/362 (12%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G I ++ +   F+       G  P+SE+  D G +   ++ VG  +  +I+    A   +
Sbjct: 314 GEIIQVSEKEVFLNINYKRDGVIPKSEID-DDGKDLKELFTVGDKIVAKIIKLKDADNYV 372

Query: 651 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA--KGYSKGTIPTEHLADHL 708
            LS + +  R      +K        ++VV    V   +IA  KG  +  IP  H+   L
Sbjct: 373 VLS-VKELQREQGYKEIKEAFENKTTLNVVVKEDVKGGIIASYKGI-RIFIPASHV--EL 428

Query: 709 EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
            H   +K  I   ++   +     +    +++++ +L++  ++   +   + +    VV 
Sbjct: 429 FHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKVEETVWNKLEEGQVVE 488

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G V  + + G FV   G + G    S+   G+    +    +G  ++  +L V+ E  ++
Sbjct: 489 GEVKRLTDFGAFVEIEG-VDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKL 547

Query: 827 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
           +LS+K+                       L  +  N  E    E + +GSV+ GKV    
Sbjct: 548 SLSVKK-----------------------LTENPWNNVE----EKYPVGSVVLGKVIRFA 580

Query: 887 DFGVVVSFEEHSDVYGF-----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSLK 939
           DFG  V  E   D  G      I+H ++A  +  +  G  I+A IL+V+  E+ + LS++
Sbjct: 581 DFGAFVKLEPGVD--GLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIR 638

Query: 940 TV 941
            V
Sbjct: 639 EV 640


>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn /
           Nigg) GN=rpsA PE=3 SV=2
          Length = 570

 Score = 53.9 bits (128), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            + +   +D     G +TKI   G FV   NG++G    S+L   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 145/343 (42%), Gaps = 72/343 (20%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1328
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1329 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1388
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1389 VTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1448 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1490
            K        + E    +   VG  + G + ++ ++G F+ ++N
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGIVTKITAFGAFVELQN 500



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 96/479 (20%), Positives = 191/479 (39%), Gaps = 72/479 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+V+PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVQPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLSVGAEVEVYL 101

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
              + +  ++ ++ +K   + +   + ++ E     I  G IT+  K G  V    G++ 
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GMEA 157

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED---- 664
           F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+     
Sbjct: 158 FLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAELI 214

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
           + + +G    G+V  +T   V  ++   G       T+     + H + M        E 
Sbjct: 215 EQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VEL 265

Query: 725 DQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F+
Sbjct: 266 NQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAFI 322

Query: 780 RFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
                + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  +  
Sbjct: 323 EIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPW 382

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE-- 896
           D         +EEK                   + IG  +  ++    ++G  V  E   
Sbjct: 383 DN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPGI 415

Query: 897 ----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
               H     +I          + G+ ++A IL V K  + + L +K +  + + E  +
Sbjct: 416 EGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEA 474



 Score = 39.3 bits (90), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 38/232 (16%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1317
             EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y
Sbjct: 132  EEGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY 175

Query: 1318 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377
              G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++
Sbjct: 176  -VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQIT 218

Query: 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1437
                 +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+
Sbjct: 219  IGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVD 277

Query: 1438 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
                RV + LK  +       E         G  V G+I ++  YG FI IE
Sbjct: 278  KEKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIE 325



 Score = 37.7 bits (86), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 145/375 (38%), Gaps = 60/375 (16%)

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             L LKQ           +EH   E+             E K    +  G  + GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316

Query: 887  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             +G  +  EE      H     ++ +       V  G  ++  +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQ 376

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
                   E N     ++K         +G+  T   I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
             +S       P + F  G +V A ++++   S   ++ L +K ++      +   + ++ 
Sbjct: 423  DMSWIKKVSHPSELFKKGNTVEAVILSVDKESK--KITLGVKQLT-----PNPWDEIEAM 475

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            + VGS +   +T+I      ++   G  G IH+++++D     +E++ S   IG  V+A+
Sbjct: 476  FPVGSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILS---IGDKVSAK 532

Query: 1121 IIAKSNKPDMKKSFL 1135
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545


>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
           GN=ypfD PE=1 SV=1
          Length = 382

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V+ GKV  +  FGA V   GG+  L  +  +S   + KP    + G E+  +VL V  
Sbjct: 188 GSVLDGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDR 246

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            ++RI+++ K TL       +    +  D L   G + ++   G FV    GV+G    S
Sbjct: 247 DNERISLSIKDTL-PGPWNQIGEKVKPGDVL--EGTVQRLVSFGAFVEILPGVEGLVHIS 303

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++       P  +   GQ VK +++       RI+LS 
Sbjct: 304 QISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSM 341



 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 144/344 (41%), Gaps = 26/344 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           G VVKG V  V+     V+     ++ + P+  +S   + K     KV  EL  +V  V+
Sbjct: 16  GDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVKVDDELDLKVTKVE 75

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
              + ++ +          L    E  +  +    +  + K G  V    GV+GF P S 
Sbjct: 76  DDALILSKRAVDADRAWEDLEKKFETKE--VFEAEVKDVVKGGLVVDI--GVRGFIPAS- 130

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVK---LGS 671
           L      E  + Y  G+ +   ++       R+ LS    +       + +L++   +GS
Sbjct: 131 LVEAHFVEDFTDYK-GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGS 189

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD-QLL 728
           ++ G V  +T     V +   G   G +   H++  L H+ V K   V++ G E   ++L
Sbjct: 190 VLDGKVQRLTDFGAFVDI---GGIDGLV---HIS-QLSHSHVEKPSDVVEEGQEVKVKVL 242

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D ++  + LS K +L     Q+      + P  V+ G V  ++  G FV  L  + G 
Sbjct: 243 SVDRDNERISLSIKDTLPGPWNQI---GEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGL 299

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
              S+  +       +    GQ+V+  +LDVN    RI+LS+++
Sbjct: 300 VHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343



 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 5/121 (4%)

Query: 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1427
            K  E ++ L    ++ G V+ +T  G F+ +   +D  V +S LS  +VE P      G+
Sbjct: 177  KKQELLQSLEVGSVLDGKVQRLTDFGAFVDIG-GIDGLVHISQLSHSHVEKPSDVVEEGQ 235

Query: 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1487
             V  +VLSV+  ++R+ +++K  D+     ++I     +  GD++ G ++R+ S+G F+ 
Sbjct: 236  EVKVKVLSVDRDNERISLSIK--DTLPGPWNQIGE--KVKPGDVLEGTVQRLVSFGAFVE 291

Query: 1488 I 1488
            I
Sbjct: 292  I 292



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 119/280 (42%), Gaps = 45/280 (16%)

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ 726
           ++G +V G+V  V    V V +I    S G IP   L+  H+E A+    V+K   E D 
Sbjct: 14  EVGDVVKGIVTKVEDKHVDVEIINVKQS-GIIPISELSSLHVEKAS---DVVKVDDELD- 68

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           L V   E   L+LS +   +++ +             V    V ++++ G  V    R  
Sbjct: 69  LKVTKVEDDALILSKRA--VDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDIGVR-- 124

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           GF P S        D   T Y G+++   +++++ +  R+ LS  ++   S  A+  QE 
Sbjct: 125 GFIPASLVEAHFVEDF--TDYKGKTLSLLVVELDRDKNRVILS-HRAVVESEQANKKQE- 180

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                   +LQS +             +GSV++GKV    DFG   +F +   + G +  
Sbjct: 181 --------LLQSLE-------------VGSVLDGKVQRLTDFG---AFVDIGGIDGLVHI 216

Query: 907 HQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLK 939
            QL+ +        VE G  ++  +L V +    + LS+K
Sbjct: 217 SQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256



 Score = 43.5 bits (101), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 34/189 (17%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319
            G ++ G++ ++     G  V IG  + G VH ++L +  V  P    +EGQ         
Sbjct: 188  GSVLDGKVQRLTDF--GAFVDIGG-IDGLVHISQLSHSHVEKPSDVVEEGQE-------- 236

Query: 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1379
               VK KVL + R       + LS++ +L                 PG   +  E + P 
Sbjct: 237  ---VKVKVLSVDRD---NERISLSIKDTL-----------------PGPWNQIGEKVKPG 273

Query: 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1439
             +++G V+ + S G F+ +   ++  V +S +S+ ++ +P +    G+ V  +VL V   
Sbjct: 274  DVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNEN 333

Query: 1440 SKRVEVTLK 1448
             +R+ ++++
Sbjct: 334  EERISLSMR 342



 Score = 36.6 bits (83), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)

Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
           ++VG + D  KV R+    G  +DI          V IS ++   V K     +EG  V+
Sbjct: 185 LEVGSVLD-GKVQRL-TDFGAFVDIGGID----GLVHISQLSHSHVEKPSDVVEEGQEVK 238

Query: 465 VRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
           V++L   R  E ++  I K +           VKPG V++G V  + SFGA V+   GV+
Sbjct: 239 VKVLSVDRDNERISLSI-KDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVE 297

Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
            L  +  +S   I  P +  + G  +  +VL V    +RI+++ ++
Sbjct: 298 GLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343


>sp|Q45388|TEX_BORPE Protein tex OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 /
            NCTC 13251) GN=tex PE=4 SV=2
          Length = 791

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 23/131 (17%)

Query: 1345 RSSLDGMSSTNSSD----------LSTDVDTPGKH-------------LEKIEDLSPNMI 1381
            R +L G+S ++ +D          +  +++ PG+              +E + DL P M+
Sbjct: 613  REALKGVSPSDFTDERFGLPTVRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMV 672

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1441
            ++G V NV + G F+ +    D  V +S L++ +V+ P     +G+ V  +VL V+   K
Sbjct: 673  LEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVARK 732

Query: 1442 RVEVTLKTSDS 1452
            RV +T++ +D+
Sbjct: 733  RVALTMRLNDA 743



 Score = 36.6 bits (83), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
            K + F+  V T +D+ PGMV++G V  V +FGA V        L  +  ++E  +  P 
Sbjct: 652 FKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPR 711

Query: 541 KKFKVGAELVFRVL--GVKSKRITVTHK 566
              +VG  +  +VL   V  KR+ +T +
Sbjct: 712 DVVRVGQTVTVKVLEVDVARKRVALTMR 739


>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
           SV=1
          Length = 378

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  +VL
Sbjct: 83  NLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 141

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      +AI   Y E T      G +T +  +GCFV    GV+G 
Sbjct: 142 KFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTK---LTGRVTNLTDYGCFVEIEEGVEGL 198

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SE+   +    PS + +VG VV+  ++      RRI+L  
Sbjct: 199 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGL 241



 Score = 41.2 bits (95), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 121/317 (38%), Gaps = 45/317 (14%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 81  LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 138

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  ++ RV ++ + G
Sbjct: 139 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 186

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N    V   +L +D   R + L L     
Sbjct: 187 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      HN+      K+  I D    + ++ G+  L+ +              +VA 
Sbjct: 247 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDIS---------WNVAG 297

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           EE  +  KK  E + V +++   R    L    L    F   +   +  K G +V GKV 
Sbjct: 298 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL---AATKKGAIVTGKVT 354

Query: 508 AVDSFGAIVQFPGGVKA 524
           AVD+ GA V+   GV+ 
Sbjct: 355 AVDAKGATVELTLGVEG 371



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 17/143 (11%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           K++ ++    TH+    G  V+GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 245 KSNPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLEGGIDGLV---HLSDISWNVAGE 298

Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 594
              +++K G E+   VL V ++R     + +L   +LA    ++Y  AT +  I  G +T
Sbjct: 299 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNYLAATKKGAIVTGKVT 354

Query: 595 KIEKHGCFVRFYNGVQGFAPRSE 617
            ++  G  V    GV+G+   SE
Sbjct: 355 AVDAKGATVELTLGVEGYLRASE 377



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G +K++T  G FI L   +D  V LS++S     E   +E+  G  +A  VL V+   
Sbjct: 262  VEGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 321

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K    + A     N L+    G IV G++  V++ G  + +
Sbjct: 322  ERISLGVK----QLAEDPFNNYLAATKKGAIVTGKVTAVDAKGATVEL 365



 Score = 38.1 bits (87), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 143/368 (38%), Gaps = 65/368 (17%)

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
           G F    NG++ F P S + + P  + + +   G+ ++ +++      +++  SRR  + 
Sbjct: 13  GGFTVELNGIRAFLPGSLVDVRPVRDTTHLE--GKELEFKVIKLDQKRNNVVVSRRAVIE 70

Query: 654 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
                 R    + ++ G  V G+V  +T     V +   G   G +    +A   ++H +
Sbjct: 71  SESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS 127

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVH 766
               ++  G E   ++L  D E + + L  K        QL  D     A      + + 
Sbjct: 128 ---EIVNVGDEITVKVLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLT 176

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 824
           G V N+ + GCFV     + G    S+ +D    ++  SK   VG  V   +LD++ E  
Sbjct: 177 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 235

Query: 825 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
           RI+L LKQ C S+    F + H                            G  +EGK+  
Sbjct: 236 RISLGLKQ-CKSNPWQQFAETHNK--------------------------GDRVEGKIKS 268

Query: 885 SNDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSL 938
             DFG+ +  E   D  V+       +AG       + G  I A +L V      + L +
Sbjct: 269 ITDFGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGV 328

Query: 939 KTVFIDRF 946
           K +  D F
Sbjct: 329 KQLAEDPF 336



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   +G  +  +
Sbjct: 81   LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 139

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +    RV + LK    +      +        G  + G++  +  YG F+ IE
Sbjct: 140  VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 192



 Score = 37.4 bits (85), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1440
            G V N+T  GCF+ +   ++  V +S +   +      P K   +G +V   VL ++   
Sbjct: 177  GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNVGDVVEVMVLDIDEER 234

Query: 1441 KRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ + LK   S    Q +E +N      GD V G+IK +  +G+FI +E
Sbjct: 235  RRISLGLKQCKSNPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLE 279


>sp|P57395|RS1_BUCAI 30S ribosomal protein S1 OS=Buchnera aphidicola subsp.
           Acyrthosiphon pisum (strain APS) GN=rpsA PE=3 SV=1
          Length = 558

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ GM VKG V  +  +GA V   GGV  L  +  M+   +  P +   VG E+  ++L
Sbjct: 188 NLQEGMHVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKIL 246

Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               +R  V+   K+      +AI   Y E T      G +T +  +GCFV    GV+G 
Sbjct: 247 KFDRERTRVSLGLKQLGEDPWIAISKRYPEETK---LSGRVTNLTDYGCFVEIEEGVEGL 303

Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SE+   +    PS +  V  VV+  ++      RRI+L  
Sbjct: 304 VHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGL 346



 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   +G  +  +
Sbjct: 186  LENLQEGMHVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINIK 244

Query: 1433 VLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +L  +    RV + LK    D   A        + L       G++  +  YG F+ IE
Sbjct: 245  ILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLS------GRVTNLTDYGCFVEIE 297



 Score = 34.7 bits (78), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 157/367 (42%), Gaps = 41/367 (11%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           +PG +++G +++++    +V    G+K+   +P + +F+  +     +VG ++   +  +
Sbjct: 19  RPGSIIRGTIVSIEK--DMVLVDAGLKSESAIP-VEQFQNSQGLLDIQVGDQIDVALDAI 75

Query: 557 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +       ++ +K        IL    E ++ +I    I   +  G F    N ++ F P
Sbjct: 76  EDGFGETLLSREKAKRHEAWLILEKAHEKSETVIG---IINGKVKGGFTVELNDIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
            S + + P  +  +++  G+ ++ +++      +++  SRR  +       R    + ++
Sbjct: 133 GSLVDVRPVRD--TIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E + +
Sbjct: 191 EGMHVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINIK 244

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIETGCFVRF 781
           +L  D E + + L  K        QL  D     S  +P    + G V N+ + GCFV  
Sbjct: 245 ILKFDRERTRVSLGLK--------QLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEI 296

Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
              + G    S+ +D    ++  SK   V   V   +LD++ E  RI+L LKQ C  +  
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQ-CKINPW 354

Query: 840 ASFMQEH 846
             F + H
Sbjct: 355 KEFSETH 361



 Score = 34.3 bits (77), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 123/325 (37%), Gaps = 45/325 (13%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGMHVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEINI 243

Query: 283 VVRSIDRTRKVV-----YLSSDPD-TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            +   DR R  V      L  DP   +SK   ++ K            +S RV ++ + G
Sbjct: 244 KILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETK------------LSGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +       +  V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKI 351

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      H +      K+  I D    + ++ G+  L+ +     + P         E
Sbjct: 352 NPWKEFSETHKKGVHVLGKIKSITDFGIFIGLNGGIDGLVHLSDISWTIP--------GE 403

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           E V K  KK  E S V +++   R    L    L+   F   +  H   K G ++ G + 
Sbjct: 404 EAVVKY-KKNDEISAVVLQVDAERERISLGIKQLEEDPFNTYIANH---KKGAIITGIIK 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMS 532
           ++D    IV+ P  ++ +  L  ++
Sbjct: 460 SLDKKNIIVKLPENLEGVIKLTEIT 484


>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=rps1b PE=3 SV=1
          Length = 305

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 28/267 (10%)

Query: 577 LSSYAEATDR--------LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
           L  +A+A D+           HG I +    G +V F     GF P  ELGL P  E   
Sbjct: 12  LDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEIED 71

Query: 629 MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAV 685
            + +       + S      ++ LS      + S ++L +L   G  +  VV       V
Sbjct: 72  SFPLDSAWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGV 131

Query: 686 VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
           V  V  +G  +G IP  HL        ++  V+K       +L  + +++ L+L+ +   
Sbjct: 132 VGDV--EGL-RGFIPRSHLMHKDNMDALVGQVLKA-----HILEANQDNNKLVLTQRR-- 181

Query: 746 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD-LSK 804
           I  A+ +      I   ++  G V  I   G FV   G +TG    S+ V G R D L+ 
Sbjct: 182 IQQAESM----GKIAAGNIYEGKVAKIQPYGVFVEIEG-VTGLLHVSQ-VSGTRVDSLNT 235

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLK 831
            +  GQ++   + +++    RI+LS +
Sbjct: 236 LFAFGQAISVYVQEIDEYKNRISLSTR 262



 Score = 38.5 bits (88), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 41/93 (44%)

Query: 740 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
           SA +SL   A+ L     H      VHG +C     G +V F G+  GF P  +      
Sbjct: 7   SAAFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPH 66

Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           A++  ++ +  +    +    ++ G++ LS +Q
Sbjct: 67  AEIEDSFPLDSAWDFLVTSEQNDEGQVRLSRRQ 99


>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN)
           GN=rpsA PE=3 SV=2
          Length = 481

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 149/377 (39%), Gaps = 53/377 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G+V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLKTV---FIDRFREA 949
           LSLK     +I+ F  A
Sbjct: 360 LSLKQANEDYIEEFDPA 376



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+     +  +++E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA-----NEDYIEE 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDPDSNEWLEGF 407



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/88 (21%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 1364 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1423
            + P +H  +   +    IV G V  +   G F+ +   ++  V +S L++ +VE P++  
Sbjct: 281  EDPWRHFARTHAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVV 338

Query: 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
             +G     +V+ ++   +R+ ++LK ++
Sbjct: 339  AVGDDAMVKVIDIDLERRRISLSLKQAN 366


>sp|P37985|RS1_DICD3 30S ribosomal protein S1 OS=Dickeya dadantii (strain 3937) GN=rpsA
           PE=3 SV=2
          Length = 557

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N    V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      HN+      K+  I D    + +D G+  L+ +              +VA 
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           EE  +  KK  E + V +++   R    L    L    F   +  +   K G +V GKV 
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVN---KKGAIVTGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           AVD+ GA V+   GV+        S   I        VG E+  +  GV  K   V+
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVS 516



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 104/477 (21%), Positives = 195/477 (40%), Gaps = 77/477 (16%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +V+G V+A+D    +V    G+K+   +P + +F+  +   + +VG E+   + 
Sbjct: 17  ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-VEQFKNAQGEIEIQVGDEVDVALD 73

Query: 555 GVKS---KRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            V+    + +    K    ++ L +  +Y E AT   + +G +      G F    NG++
Sbjct: 74  AVEDGFGETLLSREKAKRHEAWLMLEKAYEESATVTGVINGKV-----KGGFTVELNGIR 128

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            F P S + + P  +  +++  G+ ++ +++      +++  SRR  +       R    
Sbjct: 129 AFLPGSLVDVRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
           + ++ G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E
Sbjct: 187 ENLQEGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDE 240

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGC 777
              ++L  D E + + L  K        QL  D     A      + + G V N+ + GC
Sbjct: 241 ITVKVLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGC 292

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           FV     + G    S+ +D    ++  SK   VG  V   +LD++ E  RI+L LKQ C 
Sbjct: 293 FVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CK 350

Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
           ++    F + H                            G  +EGK+    DFG+ +  +
Sbjct: 351 ANPWQQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLD 384

Query: 896 EHSD--VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
              D  V+       +AG       + G  I A +L V      + L +K +  D F
Sbjct: 385 GGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           KA+ ++    TH+    G  V+GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403

Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
              +++K G E+   VL V ++R     + +L   +LA    ++Y     +  I  G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVT 459

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            ++  G  V   +GV+G+   SE   D   + + +  VG  ++ +       +R ++LS 
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVSLSI 519

Query: 655 MMK 657
             K
Sbjct: 520 RAK 522



 Score = 38.5 bits (88), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G +K++T  G FI L   +D  V LS++S     E   +E+  G  +A  VL V+   
Sbjct: 367  VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K    + A     N LS    G IV G++  V++ G  + +
Sbjct: 427  ERISLGVK----QLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL 470



 Score = 37.4 bits (85), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   +G  +  +
Sbjct: 186  LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +    RV + LK    +      +        G  + G++  +  YG F+ IE
Sbjct: 245  VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297



 Score = 34.7 bits (78), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1440
            G V N+T  GCF+ +   ++  V +S +   +      P K   +G +V   VL ++   
Sbjct: 282  GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNVGDVVEVMVLDIDEER 339

Query: 1441 KRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ + LK   +    Q +E +N      GD V G+IK +  +G+FI ++
Sbjct: 340  RRISLGLKQCKANPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLD 384


>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis
           GN=rps1 PE=3 SV=2
          Length = 263

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 23/155 (14%)

Query: 689 VIAKGYSKG-----------TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
           V+ KG++KG            +P  HL +  +        IK      +LL ++ +S+NL
Sbjct: 119 VMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKL-----KLLNVEEKSNNL 173

Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           +LS + +LI+ A      +S++   +++ G +  I   G F++ +G L G    S+    
Sbjct: 174 ILSHRRALISQA------SSNLIVGNIIEGIINQITPYGLFIK-VGNLKGLVHISEINIK 226

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               +S  + +G ++++ I+ V+ + GR++LS+K 
Sbjct: 227 NLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKH 261



 Score = 39.3 bits (90), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 1051 SSKRA---KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
            S +RA   +  S+  VG++++  I +I P  L +K G    G +HI+E+N      +E +
Sbjct: 176  SHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVG-NLKGLVHISEINIKN---LEQI 231

Query: 1108 FSNFKIGQTVTARII 1122
             S FKIG T+ A II
Sbjct: 232  SSQFKIGDTIKAVII 246



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 116/254 (45%), Gaps = 20/254 (7%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+  G +V G + + +  G +V     + A  P+  +S  + +       +     F +L
Sbjct: 23  DLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNINDTREFFLL 82

Query: 555 --GVKSKRITVTHKKT-LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
              ++SK++ ++ ++   +++   I    AE +   + +  I    K G  +    G+ G
Sbjct: 83  DYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDS---LLNVMIKGFNKGGMIINL-EGISG 138

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 671
           F P S LG     + S  ++  + +K ++++    S  + LS        +  +L+ +G+
Sbjct: 139 FVPNSHLG---NFQKSEQFN-NKFIKLKLLNVEEKSNNLILSHRRALISQASSNLI-VGN 193

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV- 729
           ++ G+++ +TP  + + V   G  KG +   H+++ ++++   + S  K G     +++ 
Sbjct: 194 IIEGIINQITPYGLFIKV---GNLKGLV---HISEINIKNLEQISSQFKIGDTIKAVIIH 247

Query: 730 LDNESSNLLLSAKY 743
           +D +   L LS K+
Sbjct: 248 VDKKQGRLSLSMKH 261


>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
           SV=1
          Length = 481

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  +++   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 38.1 bits (87), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 45/267 (16%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
                  +N+Q    +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 198  VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1364
                G        DE   V  +VL++         V LSL+++ +               
Sbjct: 251  VVQVG--------DE---VTVEVLDVDMDRE---RVSLSLKATQE--------------- 281

Query: 1365 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1424
             P +H  +   +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   
Sbjct: 282  DPWRHFARTHAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVA 339

Query: 1425 IGKLVAGRVLSVEPLSKRVEVTLKTSD 1451
            +G     +V+ ++   +R+ ++LK ++
Sbjct: 340  VGDDAMVKVIDIDLERRRISLSLKQAN 366



 Score = 37.4 bits (85), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 16/117 (13%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V GKV  +  FGA V+   G++ L  +  ++E  +  P +   VG + + +V+ +  
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDL 353

Query: 557 KSKRITVTHKKT-------LVKSKLAILSSYAEATDRLITHG-------WITKIEKH 599
           + +RI+++ K+           +K  +  SY E  + +   G       W+   EK 
Sbjct: 354 ERRRISLSLKQANEDYTEEFDPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGFEKQ 410


>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
          Length = 557

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N    V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      HN+      K+  I D    + +D G+  L+ +              +VA 
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           EE  +  KK  E + V +++   R    L    L    F   V  +   K G +V GKV 
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           AVD+ GA V+   GV+        S   +        VG E+  +  GV  K   ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           KA+ ++    TH+    G  V+GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403

Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
              +++K G E+   VL V ++R     + +L   +LA    +++     +  I  G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            ++  G  V   +GV+G+   SE   D   + + +  VG  V+ +       +R I+LS 
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519

Query: 655 MMK 657
             K
Sbjct: 520 RAK 522



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 69/473 (14%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +V+G V+A+D    +V    G+K+   +P   +F+  +   + +VG E+   + 
Sbjct: 17  ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            V+         +   K   A ++      D     G I    K G  V   NG++ F P
Sbjct: 74  AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
            S + + P  +  +++  G+ ++ +++      +++  SRR  +       R    + ++
Sbjct: 133 GSLVDVRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E   +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
           +L  D E + + L  K        QL  D     A      + + G V N+ + GCFV  
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
              + G    S+ +D    ++  SK   VG  V   +LD++ E  RI+L LKQ C ++  
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F + H                            G  +EGK+    DFG+ +  +   D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388

Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             V+       +AG       + G  I A +L V      + L +K +  D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441



 Score = 38.5 bits (88), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G +K++T  G FI L   +D  V LS++S     E   +E+  G  +A  VL V+   
Sbjct: 367  VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K       ++   NN   L+  G IV G++  V++ G  + +
Sbjct: 427  ERISLGVK-----QLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVEL 470



 Score = 37.4 bits (85), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   +G  +  +
Sbjct: 186  LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +    RV + LK    +      +        G  + G++  +  YG F+ IE
Sbjct: 245  VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297



 Score = 35.0 bits (79), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1440
            G V N+T  GCF+ +   ++  V +S +   +      P K   +G +V   VL ++   
Sbjct: 282  GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNVGDVVEVMVLDIDEER 339

Query: 1441 KRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ + LK   +    Q +E +N      GD V G+IK +  +G+FI ++
Sbjct: 340  RRISLGLKQCKANPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLD 384


>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
           PE=1 SV=1
          Length = 557

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N    V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      HN+      K+  I D    + +D G+  L+ +              +VA 
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           EE  +  KK  E + V +++   R    L    L    F   V  +   K G +V GKV 
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           AVD+ GA V+   GV+        S   +        VG E+  +  GV  K   ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           KA+ ++    TH+    G  V+GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403

Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
              +++K G E+   VL V ++R     + +L   +LA    +++     +  I  G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            ++  G  V   +GV+G+   SE   D   + + +  VG  V+ +       +R I+LS 
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519

Query: 655 MMK 657
             K
Sbjct: 520 RAK 522



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 69/473 (14%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +V+G V+A+D    +V    G+K+   +P   +F+  +   + +VG E+   + 
Sbjct: 17  ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            V+         +   K   A ++      D     G I    K G  V   NG++ F P
Sbjct: 74  AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
            S + + P  +  +++  G+ ++ +++      +++  SRR  +       R    + ++
Sbjct: 133 GSLVDVRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E   +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
           +L  D E + + L  K        QL  D     A      + + G V N+ + GCFV  
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
              + G    S+ +D    ++  SK   VG  V   +LD++ E  RI+L LKQ C ++  
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F + H                            G  +EGK+    DFG+ +  +   D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388

Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             V+       +AG       + G  I A +L V      + L +K +  D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441



 Score = 38.5 bits (88), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G +K++T  G FI L   +D  V LS++S     E   +E+  G  +A  VL V+   
Sbjct: 367  VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K       ++   NN   L+  G IV G++  V++ G  + +
Sbjct: 427  ERISLGVK-----QLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVEL 470



 Score = 37.4 bits (85), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   +G  +  +
Sbjct: 186  LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +    RV + LK    +      +        G  + G++  +  YG F+ IE
Sbjct: 245  VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297



 Score = 35.0 bits (79), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1440
            G V N+T  GCF+ +   ++  V +S +   +      P K   +G +V   VL ++   
Sbjct: 282  GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNVGDVVEVMVLDIDEER 339

Query: 1441 KRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ + LK   +    Q +E +N      GD V G+IK +  +G+FI ++
Sbjct: 340  RRISLGLKQCKANPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLD 384


>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
           ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
          Length = 557

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N    V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      HN+      K+  I D    + +D G+  L+ +              +VA 
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           EE  +  KK  E + V +++   R    L    L    F   V  +   K G +V GKV 
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           AVD+ GA V+   GV+        S   +        VG E+  +  GV  K   ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           KA+ ++    TH+    G  V+GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403

Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
              +++K G E+   VL V ++R     + +L   +LA    +++     +  I  G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            ++  G  V   +GV+G+   SE   D   + + +  VG  V+ +       +R I+LS 
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519

Query: 655 MMK 657
             K
Sbjct: 520 RAK 522



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 69/473 (14%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +V+G V+A+D    +V    G+K+   +P   +F+  +   + +VG E+   + 
Sbjct: 17  ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            V+         +   K   A ++      D     G I    K G  V   NG++ F P
Sbjct: 74  AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
            S + + P  +  +++  G+ ++ +++      +++  SRR  +       R    + ++
Sbjct: 133 GSLVDVRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E   +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
           +L  D E + + L  K        QL  D     A      + + G V N+ + GCFV  
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
              + G    S+ +D    ++  SK   VG  V   +LD++ E  RI+L LKQ C ++  
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F + H                            G  +EGK+    DFG+ +  +   D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388

Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             V+       +AG       + G  I A +L V      + L +K +  D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441



 Score = 38.5 bits (88), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G +K++T  G FI L   +D  V LS++S     E   +E+  G  +A  VL V+   
Sbjct: 367  VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K       ++   NN   L+  G IV G++  V++ G  + +
Sbjct: 427  ERISLGVK-----QLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVEL 470



 Score = 37.4 bits (85), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   +G  +  +
Sbjct: 186  LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +    RV + LK    +      +        G  + G++  +  YG F+ IE
Sbjct: 245  VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297



 Score = 35.0 bits (79), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1440
            G V N+T  GCF+ +   ++  V +S +   +      P K   +G +V   VL ++   
Sbjct: 282  GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNVGDVVEVMVLDIDEER 339

Query: 1441 KRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ + LK   +    Q +E +N      GD V G+IK +  +G+FI ++
Sbjct: 340  RRISLGLKQCKANPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLD 384


>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
           SV=1
          Length = 557

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
           LE +QEGM +   VK++ D+G  +  G     G L   ++A    ++    V  G  +  
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
            V   DR R  V      L  DP             ++I    P G  ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
             +       G V +  +  T    +     N    V   +L +D   R + L L     
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           NP+      HN+      K+  I D    + +D G+  L+ +              +VA 
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           EE  +  KK  E + V +++   R    L    L    F   V  +   K G +V GKV 
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
           AVD+ GA V+   GV+        S   +        VG E+  +  GV  K   ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
           KA+ ++    TH+    G  V+GK+ ++  FG  +   GG+  L    H+S+      G 
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403

Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
              +++K G E+   VL V ++R     + +L   +LA    +++     +  I  G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            ++  G  V   +GV+G+   SE   D   + + +  VG  V+ +       +R I+LS 
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519

Query: 655 MMK 657
             K
Sbjct: 520 RAK 522



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 69/473 (14%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           + +PG +V+G V+A+D    +V    G+K+   +P   +F+  +   + +VG E+   + 
Sbjct: 17  ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            V+         +   K   A ++      D     G I    K G  V   NG++ F P
Sbjct: 74  AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
            S + + P  +  +++  G+ ++ +++      +++  SRR  +       R    + ++
Sbjct: 133 GSLVDVRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G  V G+V  +T     V +   G   G +    +A   ++H +    ++  G E   +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
           +L  D E + + L  K        QL  D     A      + + G V N+ + GCFV  
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
              + G    S+ +D    ++  SK   VG  V   +LD++ E  RI+L LKQ C ++  
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F + H                            G  +EGK+    DFG+ +  +   D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388

Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
             V+       +AG       + G  I A +L V      + L +K +  D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441



 Score = 38.5 bits (88), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1440
            V+G +K++T  G FI L   +D  V LS++S     E   +E+  G  +A  VL V+   
Sbjct: 367  VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 1441 KRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1488
            +R+ + +K       ++   NN   L+  G IV G++  V++ G  + +
Sbjct: 427  ERISLGVK-----QLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVEL 470



 Score = 37.4 bits (85), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 1373 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1432
            +E+L   M V+G VKN+T  G F+ L   +D  + +++++   V+ P +   +G  +  +
Sbjct: 186  LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244

Query: 1433 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            VL  +    RV + LK    +      +        G  + G++  +  YG F+ IE
Sbjct: 245  VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297



 Score = 35.0 bits (79), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 1384 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1440
            G V N+T  GCF+ +   ++  V +S +   +      P K   +G +V   VL ++   
Sbjct: 282  GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNVGDVVEVMVLDIDEER 339

Query: 1441 KRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
            +R+ + LK   +    Q +E +N      GD V G+IK +  +G+FI ++
Sbjct: 340  RRISLGLKQCKANPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLD 384


>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
           GN=rpsA PE=3 SV=2
          Length = 568

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 29/171 (16%)

Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L +D    N+++S +  L  S A+Q      ++    VV G V NI + G FV  LG 
Sbjct: 161 EILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVD-LGG 219

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    +     +    S+   +GQ V+  I+ +N ET RI+L +KQ            
Sbjct: 220 IDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQ------------ 267

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                      L+S   +G   K    + +G  I G V    D+G  V  E
Sbjct: 268 -----------LESDPWDGIGAK----YPVGKKISGTVTNITDYGAFVELE 303



 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 134/605 (22%), Positives = 229/605 (37%), Gaps = 86/605 (14%)

Query: 491  FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            F  +D+  G V KG V A++   AIV     V+   PL    EF         KVG E+ 
Sbjct: 19   FAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPL---KEFGAKAKDGTLKVGDEVE 75

Query: 551  FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
              V  +++      ++ +K   +     L    EA +R+   G I    K G F    +G
Sbjct: 76   VYVERIENALGEAVLSREKARREESWQRLEVKFEAGERV--EGIIFNQVK-GGFTVDLDG 132

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SSIPASRRINLSFMMKPTRVSED 664
               F PRS++ + P  + + + H  Q  +   M     +I  SRR  L       R    
Sbjct: 133  AVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIV 192

Query: 665  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
              ++ G +V GVV  +T     V +   G   G +    +A   + H +    ++  G +
Sbjct: 193  QNLEEGQVVEGVVKNITDYGAFVDL---GGIDGLLHVTDMAWRRVNHPS---EILNIGQQ 246

Query: 724  FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGC 777
               Q++ ++ E+  + L  K        QL SD      +       + G V NI + G 
Sbjct: 247  VKVQIIRINQETHRISLGMK--------QLESDPWDGIGAKYPVGKKISGTVTNITDYGA 298

Query: 778  FVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            FV     + G    S+ +   +     K     Q V   +L+V+    RI+L LKQ+  +
Sbjct: 299  FVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLEN 358

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
               A F   H                            G+ +EG+V    +FG+ +  + 
Sbjct: 359  PWQA-FAHSH--------------------------PAGTEVEGEVKNKTEFGLFIGLD- 390

Query: 897  HSDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
              DV G +    L     G  V      G V++A +LDV   +  + L +K +  D   E
Sbjct: 391  -GDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIKQLGRDAVGE 449

Query: 949  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
            A              AS +L  +  V+A V  V +  + + L  +     +   +D +  
Sbjct: 450  A-------------AASGELRKNAVVSAEVIGVNDGGIEVRLVNHEDVTAFIRRADLSRD 496

Query: 1009 KFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSL 1066
            +  Q+  +F  GQ+V A V          +L +    I+E + + ++     S   +G +
Sbjct: 497  RDEQRPERFSVGQTVDARVTNFSKKDRKIQLSIKALEIAEEKEAVAQFGSSDSGASLGDI 556

Query: 1067 VQAEI 1071
            + A +
Sbjct: 557  LGAAL 561



 Score = 40.0 bits (92), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1430
            E +++L    +V+G VKN+T  G F+ L   +D  + +++++   V  P +   IG+ V 
Sbjct: 190  EIVQNLEEGQVVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEILNIGQQVK 248

Query: 1431 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1489
             +++ +   + R+ + +K  +S           +   VG  + G +  +  YG F+ +E
Sbjct: 249  VQIIRINQETHRISLGMKQLESDPWD----GIGAKYPVGKKISGTVTNITDYGAFVELE 303


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.135    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,239,564
Number of Sequences: 539616
Number of extensions: 22826385
Number of successful extensions: 72615
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 70616
Number of HSP's gapped (non-prelim): 1628
length of query: 1497
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1366
effective length of database: 120,879,763
effective search space: 165121756258
effective search space used: 165121756258
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)