Query 000449
Match_columns 1497
No_of_seqs 474 out of 3920
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:48:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000449.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_225-229//hhsearch_pdb/000449hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 1.0 1 1 228.4 27.0 211 584-835 5-219 (285)
2 3go5_A Multidomain protein wit 1.0 1 1 218.6 27.2 215 668-946 5-222 (285)
3 1q8k_A Eukaryotic translation 1.0 1 1 151.9 -4.1 107 759-892 11-120 (308)
4 1kl9_A Eukaryotic translation 1.0 1 1 148.3 -5.1 120 759-909 13-135 (182)
5 2a19_A EIF-2- alpha, eukaryoti 1.0 1 1 139.9 -3.1 103 761-890 15-120 (175)
6 3aev_A Translation initiation 1.0 1 1 138.2 -4.4 104 760-890 10-116 (275)
7 1kl9_A Eukaryotic translation 1.0 1 1 135.6 -3.3 108 1376-1489 13-123 (182)
8 3psi_A Transcription elongatio 1.0 1 1 124.1 8.9 81 755-835 896-977 (1219)
9 3psf_A Transcription elongatio 1.0 1 1 124.0 0.2 84 1371-1454 898-982 (1030)
10 2a19_A EIF-2- alpha, eukaryoti 1.0 1 1 123.7 2.8 105 1376-1484 13-120 (175)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=228.39 Aligned_cols=211 Identities=18% Similarity=0.112 Sum_probs=179.1
Q ss_pred CCCCEEEEEEEEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 59958999999996204999993756986423134689889998786589799999999706999799998408787642
Q 000449 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663 (1497)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gi~gflp~sel~~~~~~~~~~~~~vGq~v~vrVi~vd~~~~ri~lS~k~~~~~~~~ 663 (1497)
..|+++.|+|+++.++|+||++ ++..||+|.+++. . ++|++++|.|+ .|. ++|+++|.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~-~g~egllp~se~~-------~---~vGdevev~v~-~d~-~~r~iat~~~------- 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK-DGQTYALAKEEGQ-------H---TVGDTVKGFAY-TDM-KQKLRLTTLE------- 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE-TTEEEEEEGGGCC-------C---CTTSEEEEEEE-ECT-TSCEEEECSC-------
T ss_pred CCCCEEEEEEEEEECCEEEEEC-CCEEEEEEHHHCC-------C---CCCCEEEEEEE-ECC-CCCEEEECCC-------
T ss_conf 6999999999999798899981-9969999989986-------1---45999999999-989-9989986125-------
Q ss_pred CCCCCCCCEEEEEEEEEE-CCCEEEEEEECC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEC
Q ss_conf 212679989999999994-591899998569-479987188446542221222311378876847998623578236403
Q 000449 664 DDLVKLGSLVSGVVDVVT-PNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741 (1497)
Q Consensus 664 ~~~l~~G~iv~g~V~~i~-~~Gv~V~l~~~~-~i~g~ip~~hLsd~~~~~~~l~~~~k~G~~i~~vl~id~~~~~i~ls~ 741 (1497)
+.+++|+++.|+|++++ ++|+||++ +. +.+||||.+++++.. ..++++||++...+.+|+ ++||.+|+
T Consensus 65 -p~~~~G~~~~g~V~~v~~~~GaFVdi--G~~~~d~lvp~sel~~~~------~~~~~~Gd~v~v~l~iD~-~~Ri~ls~ 134 (285)
T 3go5_A 65 -VTATQDQFGWGRVTEVRKDLGVFVDT--GLPDKEIVVSLDILPELK------ELWPKKGDQLYIRLEVDK-KDRIWGLL 134 (285)
T ss_dssp -CCSCSSSCEEEEEEEEETTTEEEEEC--SCTTCCEEEEGGGSCSSG------GGSCCTTCEEEEEEEECT-TSCEEEEE
T ss_pred -CCCCCCCEEEEEEEEECCCCEEEEEE--CCCCCEEEEEHHHCCCCC------CCCCCCCCEEEEEEEECC-CCCEEEEE
T ss_conf -34569999999999985685499998--987708999989997643------466689999999999999-99699982
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEE-EECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 211-12422466773367899999999999994564899-9699909999388878521359545867899999999997
Q 000449 742 KYS-LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819 (1497)
Q Consensus 742 K~s-l~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~GvFV-~f~~gi~Glvp~sels~~~~~~~~~~f~~Gq~V~v~V~~i 819 (1497)
|+. ..++|... .+.+++|+.+.|.|.+++++|+|| .+.+++.||+|.|++++ .+++||.|.|+|+++
T Consensus 135 k~~~~~~~~~~~---~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~i 203 (285)
T 3go5_A 135 AYQEDFQRLARP---AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGF 203 (285)
T ss_dssp CCHHHHHHHCCC---CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEE
T ss_pred HHHHHCCHHHHH---HHHCCCCCEEEEEEEEEECCCEEEEEECCCEEEEEEHHHCCC--------CCCCCCEEEEEEEEE
T ss_conf 031101644644---653799999999999991794799992898599989898426--------699999999999999
Q ss_pred ECCCCEEEEEEECCCC
Q ss_conf 1899969998302445
Q 000449 820 NSETGRITLSLKQSCC 835 (1497)
Q Consensus 820 D~e~~ri~LSlk~~~~ 835 (1497)
|++++|+.||+|+...
T Consensus 204 d~~d~kI~LSlk~~~~ 219 (285)
T 3go5_A 204 REVDRTLNLSLKPRSF 219 (285)
T ss_dssp ETTTTEEEEECSCCCC
T ss_pred ECCCCEEEEEECHHHH
T ss_conf 8899959999374451
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=218.55 Aligned_cols=215 Identities=17% Similarity=0.105 Sum_probs=177.9
Q ss_pred CCCCEEEEEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf 79989999999994591899998569479987188446542221222311378876847998623578236403211124
Q 000449 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747 (1497)
Q Consensus 668 ~~G~iv~g~V~~i~~~Gv~V~l~~~~~i~g~ip~~hLsd~~~~~~~l~~~~k~G~~i~~vl~id~~~~~i~ls~K~sl~~ 747 (1497)
.+|++++|+|++++++|+||++ ++.+|+||..+++ . ++||+++..+..|.++ ++.+|.+ +
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~---~g~egllp~se~~-----------~-~vGdevev~v~~d~~~-r~iat~~----~ 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK---DGQTYALAKEEGQ-----------H-TVGDTVKGFAYTDMKQ-KLRLTTL----E 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE---TTEEEEEEGGGCC-----------C-CTTSEEEEEEEECTTS-CEEEECS----C
T ss_pred CCCCEEEEEEEEEECCEEEEEC---CCEEEEEEHHHCC-----------C-CCCCEEEEEEEECCCC-CEEEECC----C
T ss_conf 6999999999999798899981---9969999989986-----------1-4599999999998999-8998612----5
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEE-CCEEEEEECC-CEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCE
Q ss_conf 22466773367899999999999994-5648999699-909999388878521359545867899999999997189996
Q 000449 748 SAQQLPSDASHIHPNSVVHGYVCNII-ETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825 (1497)
Q Consensus 748 ~~~~~~~~~~~~~~G~~v~G~V~~i~-~~GvFV~f~~-gi~Glvp~sels~~~~~~~~~~f~~Gq~V~v~V~~iD~e~~r 825 (1497)
| .+++|+.+.|.|++++ ++|+||++.. +..||+|.|+++|... ..+++||.+.++ +.+|+ ++|
T Consensus 65 p---------~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~----~~~~~Gd~v~v~-l~iD~-~~R 129 (285)
T 3go5_A 65 V---------TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE----LWPKKGDQLYIR-LEVDK-KDR 129 (285)
T ss_dssp C---------CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG----GSCCTTCEEEEE-EEECT-TSC
T ss_pred C---------CCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEHHHCCCCCC----CCCCCCCEEEEE-EEECC-CCC
T ss_conf 3---------45699999999999856854999989877089999899976434----666899999999-99999-996
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECEEEE-EECCCCCEEEEE
Q ss_conf 9998302445788720244322189999986214467863221134578849999999994061599-945787637999
Q 000449 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV-SFEEHSDVYGFI 904 (1497)
Q Consensus 826 i~LSlk~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~V~g~V~~i~~~G~~v-~l~~~~~v~g~i 904 (1497)
+.+|+|+... +++| ......|.+|+.|+|+|.+++++|+|| .+++ ++.||+
T Consensus 130 i~ls~k~~~~-----------~~~~---------------~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~--g~~Gli 181 (285)
T 3go5_A 130 IWGLLAYQED-----------FQRL---------------ARPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN--NMLGFI 181 (285)
T ss_dssp EEEEECCHHH-----------HHHH---------------CCCCCSCCTTCEEEEEEEEEETTEEEEEETTT--TEEEEE
T ss_pred EEEEEHHHHH-----------CCHH---------------HHHHHHCCCCCEEEEEEEEEECCCEEEEEECC--CEEEEE
T ss_conf 9998203110-----------1644---------------64465379999999999999179479999289--859998
Q ss_pred EEEECCCCCCCCCCEEEEEEEEEECCCCEEEEEEEHHHHHHH
Q ss_conf 624238960148987999999875678889997201211013
Q 000449 905 THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946 (1497)
Q Consensus 905 ~~~~l~~~~~~~G~~v~~~Vl~vd~~~~~v~lSlk~~l~~~~ 946 (1497)
|.++++ ..+++||+++++|+.++.++++|.||+|+.....+
T Consensus 182 h~SEl~-~~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~ 222 (285)
T 3go5_A 182 HPSERY-AEPRLGQVLDARVIGFREVDRTLNLSLKPRSFEML 222 (285)
T ss_dssp CGGGCS-SCCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCC
T ss_pred EHHHCC-CCCCCCCEEEEEEEEEECCCCEEEEEECHHHHHCC
T ss_conf 989842-66999999999999998899959999374451122
No 3
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=1.00 E-value=1 Score=151.88 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=93.3
Q ss_pred CCCCCEEEEEEEEEECCEEEEEEC--CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 899999999999994564899969--990999938887852135954586789999999999718999699983024457
Q 000449 759 IHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836 (1497)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvFV~f~--~gi~Glvp~sels~~~~~~~~~~f~~Gq~V~v~V~~iD~e~~ri~LSlk~~~~~ 836 (1497)
.++|+++.|.|+++++||+||++. +++.||+|.|+++|.+..++.+.|++||.|.|+|+++|++++|+.||+|....
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~- 89 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP- 89 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH-
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCEEEEEEEECCC-
T ss_conf 9999999999999967689999878898699998577276433698882689999999999991778879999986355-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE-CEEEE
Q ss_conf 887202443221899999862144678632211345788499999999940-61599
Q 000449 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVV 892 (1497)
Q Consensus 837 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~V~g~V~~i~~-~G~~v 892 (1497)
.||+.. ...|.+|+.+.|+|..+.+ +|+++
T Consensus 90 -----------~p~~~~---------------~~~~~~G~~v~G~V~~v~~~~G~fi 120 (308)
T 1q8k_A 90 -----------EEAIKC---------------EDKFTKSKTVYSILRHVAEVLEYTK 120 (308)
T ss_dssp -----------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred -----------CHHHHH---------------HHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf -----------737889---------------9970689803799999344569836
No 4
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=1.00 E-value=1 Score=148.30 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=94.0
Q ss_pred CCCCCEEEEEEEEEECCEEEEEE--CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 89999999999999456489996--9990999938887852135954586789999999999718999699983024457
Q 000449 759 IHPNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836 (1497)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvFV~f--~~gi~Glvp~sels~~~~~~~~~~f~~Gq~V~v~V~~iD~e~~ri~LSlk~~~~~ 836 (1497)
.++|+++.|.|+++++||+||++ .+++.||+|.|+++|.+..++.+.|++||.|.|+|+++|.+++|+.||+|+...
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~- 91 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP- 91 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCH-
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCEEEEEEEECCC-
T ss_conf 9998999999999964479999824899589989899777432799880679999999999997889979999951682-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE-CEEEEEECCCCCEEEEEEEEEC
Q ss_conf 887202443221899999862144678632211345788499999999940-6159994578763799962423
Q 000449 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVVSFEEHSDVYGFITHHQL 909 (1497)
Q Consensus 837 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~V~g~V~~i~~-~G~~v~l~~~~~v~g~i~~~~l 909 (1497)
.||+.. ...|..|+.++++|..+.+ +| +.+++ ++.|++|....
T Consensus 92 -----------~p~~~~---------------~~~~~~g~~v~g~v~~i~~~~g--v~l~~--giegl~h~s~~ 135 (182)
T 1kl9_A 92 -----------EEAIKC---------------EDKFTKSKTVYSILRHVAEVLE--YTKDE--QLESLFQRTAW 135 (182)
T ss_dssp -----------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHTT--CCSHH--HHHHHHHHTHH
T ss_pred -----------CHHHHH---------------HHHCCCCCEEEEEEEECHHHCC--CCCCC--CHHHEEEEEEC
T ss_conf -----------748999---------------9866688989999999545469--95667--82016775341
No 5
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=1.00 E-value=1 Score=139.90 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=76.6
Q ss_pred CCCEEEEEEEEEECCEEEEEE--CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 999999999999456489996--999099993888785213595458678999999999971899969998302445788
Q 000449 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1497)
Q Consensus 761 ~G~~v~G~V~~i~~~GvFV~f--~~gi~Glvp~sels~~~~~~~~~~f~~Gq~V~v~V~~iD~e~~ri~LSlk~~~~~~~ 838 (1497)
+|+++.|.|+++++||+||++ ++++.||+|.|+++|.+..++.+.|++||.|.|+|+++|++++|+.||+++...
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~--- 91 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSS--- 91 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCH---
T ss_pred CCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEEEECCC---
T ss_conf 98999999999962169999857899389989899587432798881789999999999998888959999976675---
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEE-ECEE
Q ss_conf 720244322189999986214467863221134578849999999994-0615
Q 000449 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN-DFGV 890 (1497)
Q Consensus 839 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~V~g~V~~i~-~~G~ 890 (1497)
+||+.. ...|+.|+.++|+|..+. ++|+
T Consensus 92 ---------~~~~~~---------------~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 92 ---------EDIIKC---------------EEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp ---------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------CHHHHH---------------HHHCCCCCCCEEEEEECHHHCCC
T ss_conf ---------737889---------------98545899526999983322697
No 6
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=1.00 E-value=1 Score=138.22 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=86.1
Q ss_pred CCCCEEEEEEEEEECCEEEEEEC--CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 99999999999994564899969--9909999388878521359545867899999999997189996999830244578
Q 000449 760 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837 (1497)
Q Consensus 760 ~~G~~v~G~V~~i~~~GvFV~f~--~gi~Glvp~sels~~~~~~~~~~f~~Gq~V~v~V~~iD~e~~ri~LSlk~~~~~~ 837 (1497)
++|+++.|.|+++++||+||++. +++.||+|.|++++.+..++.+.|++||.|.|+|+++|++++++.||++....
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~-- 87 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQ-- 87 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCH--
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEEEECCC--
T ss_conf 998999999999977689999878898289999899486321387750479999999999997778879999953575--
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEE-ECEE
Q ss_conf 8720244322189999986214467863221134578849999999994-0615
Q 000449 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN-DFGV 890 (1497)
Q Consensus 838 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~V~g~V~~i~-~~G~ 890 (1497)
.+|+.. ...|..|+.+.+.|..+. ++|+
T Consensus 88 ----------~~~~~~---------------~~~~~~g~~v~g~v~~v~~~~G~ 116 (275)
T 3aev_A 88 ----------QQRKAK---------------LQEFKRAQKAENLLRLAAEKLGK 116 (275)
T ss_dssp ----------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------CHHHHH---------------HHHCCCCCEEEEEEEECHHHCCC
T ss_conf ----------545788---------------88635778577999981544699
No 7
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=1.00 E-value=1 Score=135.59 Aligned_cols=108 Identities=18% Similarity=0.244 Sum_probs=86.9
Q ss_pred CCCCCEEEEEEEEEECEEEEEEE--CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 99995999999988240099995--9980899983004887446878755899989999999728998399999717888
Q 000449 1376 LSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1497)
Q Consensus 1376 lk~G~iv~G~V~~v~~~G~fV~l--~~~~~g~v~is~lsd~~~~~~~~~~~~gq~V~~~V~~vd~~~~~i~lSlk~~~~~ 1453 (1497)
+++|+++.|.|+++++||+||+| .++++|+||+|++++.|+.++.+.|++||.|.++|+++|.++++|.||||....+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 99989999999999644799998248995899898997774327998806799999999999978899799999516827
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEE-CEEEEEEC
Q ss_conf 6663334878888899899999999851-50599987
Q 000449 1454 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFITIE 1489 (1497)
Q Consensus 1454 ~~~~~~~~~~~dl~~G~iv~G~V~~v~~-~GvFV~l~ 1489 (1497)
||.. ..+.+++|+++.|.|+++++ || |.|+
T Consensus 93 p~~~----~~~~~~~g~~v~g~v~~i~~~~g--v~l~ 123 (182)
T 1kl9_A 93 EAIK----CEDKFTKSKTVYSILRHVAEVLE--YTKD 123 (182)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHTT--CCSH
T ss_pred HHHH----HHHHCCCCCEEEEEEEECHHHCC--CCCC
T ss_conf 4899----99866688989999999545469--9566
No 8
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=124.06 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=76.5
Q ss_pred CCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEECCCCCCCC-CCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECC
Q ss_conf 33678999999999999945648999699909999388878521-35954586789999999999718999699983024
Q 000449 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1497)
Q Consensus 755 ~~~~~~~G~~v~G~V~~i~~~GvFV~f~~gi~Glvp~sels~~~-~~~~~~~f~~Gq~V~v~V~~iD~e~~ri~LSlk~~ 833 (1497)
+.+++++|+++.|.|++|++||+||++.+|+.||+|.|+++|.+ +.++.+.|++||.|.|+|+++|.+++|+.||||..
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred CHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEECHH
T ss_conf 68667788789999999714559999579956998899857875568988807899989999999988999899996277
Q ss_pred CC
Q ss_conf 45
Q 000449 834 CC 835 (1497)
Q Consensus 834 ~~ 835 (1497)
+.
T Consensus 976 dl 977 (1219)
T 3psi_A 976 DV 977 (1219)
T ss_dssp HH
T ss_pred HH
T ss_conf 84
No 9
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=123.99 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=79.5
Q ss_pred CCCCCCCCCCEEEEEEEEEECEEEEEEECCCEEEEEECCCCCCCC-CCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 766799999599999998824009999599808999830048874-4687875589998999999972899839999971
Q 000449 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1497)
Q Consensus 1371 ~~~~~lk~G~iv~G~V~~v~~~G~fV~l~~~~~g~v~is~lsd~~-~~~~~~~~~~gq~V~~~V~~vd~~~~~i~lSlk~ 1449 (1497)
..+++|++|+++.|.|++|++||+||+|+.+++|+||+|+++|.| +.++.+.|++||.|+|+|+++|.+.++|.||||.
T Consensus 898 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 898 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CCHHHHCCCCEEEEEEEEECCCEEEEEECCCCEEEEEHHHCCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEECH
T ss_conf 62888668987778899970672899967996799889984777666898774899998999999998889989999636
Q ss_pred CCCCC
Q ss_conf 78886
Q 000449 1450 SDSRT 1454 (1497)
Q Consensus 1450 ~~~~~ 1454 (1497)
++...
T Consensus 978 ~dl~~ 982 (1030)
T 3psf_A 978 HDVKQ 982 (1030)
T ss_dssp -----
T ss_pred HHHCC
T ss_conf 78345
No 10
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=1.00 E-value=1 Score=123.68 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=95.2
Q ss_pred CCCCCEEEEEEEEEECEEEEEEEC--CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 999959999999882400999959--980899983004887446878755899989999999728998399999717888
Q 000449 1376 LSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1497)
Q Consensus 1376 lk~G~iv~G~V~~v~~~G~fV~l~--~~~~g~v~is~lsd~~~~~~~~~~~~gq~V~~~V~~vd~~~~~i~lSlk~~~~~ 1453 (1497)
.++|+++.|.|+++++||+||+|. ++++|++|+|++++.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~ 92 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSE 92 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 99989999999999621699998578993899898995874327988817899999999999988889599999766757
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEE-ECEE
Q ss_conf 666333487888889989999999985-1505
Q 000449 1454 TASQSEINNLSNLHVGDIVIGQIKRVE-SYGL 1484 (1497)
Q Consensus 1454 ~~~~~~~~~~~dl~~G~iv~G~V~~v~-~~Gv 1484 (1497)
||. ...+.+++|+++.|.|++++ +||+
T Consensus 93 ~~~----~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 93 DII----KCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH----HHHHHCCCCCCCEEEEEECHHHCCC
T ss_conf 378----8998545899526999983322697
Done!