Query 000450
Match_columns 1496
No_of_seqs 523 out of 4493
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 5.5E-36 1.2E-40 356.1 40.0 544 17-764 63-617 (775)
2 KOG0271 Notchless-like WD40 re 100.0 1.7E-35 3.6E-40 328.9 27.0 360 14-705 113-479 (480)
3 KOG0319 WD40-repeat-containing 100.0 1.9E-33 4.1E-38 334.5 41.0 543 22-769 25-580 (775)
4 KOG0306 WD40-repeat-containing 100.0 1.1E-30 2.5E-35 310.2 48.6 580 17-765 66-663 (888)
5 KOG0271 Notchless-like WD40 re 100.0 3.1E-31 6.8E-36 295.1 26.8 214 500-764 238-479 (480)
6 KOG0306 WD40-repeat-containing 100.0 4.7E-28 1E-32 288.1 46.1 506 15-708 106-665 (888)
7 KOG0291 WD40-repeat-containing 100.0 5.6E-25 1.2E-29 262.2 46.9 424 16-716 145-621 (893)
8 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-27 2.3E-32 270.9 22.4 142 527-705 317-458 (459)
9 KOG0291 WD40-repeat-containing 100.0 1.3E-23 2.9E-28 250.6 53.5 524 21-771 19-555 (893)
10 KOG1408 WD40 repeat protein [F 100.0 1.8E-25 3.9E-30 263.2 37.1 605 5-767 58-714 (1080)
11 KOG0318 WD40 repeat stress pro 100.0 3.2E-23 6.9E-28 239.6 54.1 532 14-765 57-601 (603)
12 KOG0286 G-protein beta subunit 100.0 1.4E-25 3E-30 243.9 32.5 200 506-764 142-343 (343)
13 KOG0272 U4/U6 small nuclear ri 99.9 3.4E-27 7.4E-32 266.9 19.2 223 477-764 233-458 (459)
14 KOG0318 WD40 repeat stress pro 99.9 4E-23 8.6E-28 238.8 44.6 405 19-707 193-602 (603)
15 KOG1539 WD repeat protein [Gen 99.9 3.1E-23 6.8E-28 250.2 45.5 511 27-765 123-647 (910)
16 KOG0279 G protein beta subunit 99.9 1.2E-22 2.5E-27 220.3 32.0 142 527-708 164-314 (315)
17 KOG0295 WD40 repeat-containing 99.9 1.3E-23 2.9E-28 234.2 24.4 151 527-706 249-405 (406)
18 KOG0273 Beta-transducin family 99.9 1.1E-22 2.4E-27 232.9 31.4 161 528-720 332-495 (524)
19 KOG0273 Beta-transducin family 99.9 1.3E-22 2.9E-27 232.2 30.3 169 505-707 355-523 (524)
20 KOG0286 G-protein beta subunit 99.9 3.3E-22 7.2E-27 217.7 31.8 141 527-705 201-343 (343)
21 KOG0263 Transcription initiati 99.9 3.9E-24 8.5E-29 258.8 18.6 209 501-768 443-651 (707)
22 KOG0281 Beta-TrCP (transducin 99.9 3.7E-24 8E-29 235.7 15.4 145 523-711 328-481 (499)
23 KOG0315 G-protein beta subunit 99.9 4.5E-22 9.8E-27 212.2 29.9 161 527-725 138-306 (311)
24 KOG1063 RNA polymerase II elon 99.9 4.3E-21 9.4E-26 228.1 40.0 521 15-729 53-674 (764)
25 KOG0263 Transcription initiati 99.9 5.1E-23 1.1E-27 249.2 19.9 223 501-767 370-608 (707)
26 KOG0279 G protein beta subunit 99.9 5.8E-22 1.3E-26 214.9 23.9 277 478-831 31-310 (315)
27 KOG0265 U5 snRNP-specific prot 99.9 3.3E-21 7.2E-26 210.9 29.1 140 528-705 189-336 (338)
28 KOG0281 Beta-TrCP (transducin 99.9 1.2E-23 2.7E-28 231.6 9.4 221 477-770 209-432 (499)
29 cd00200 WD40 WD40 domain, foun 99.9 3.8E-20 8.3E-25 209.1 36.0 141 527-705 149-289 (289)
30 KOG0276 Vesicle coat complex C 99.9 4.3E-22 9.4E-27 233.3 18.9 231 479-771 29-262 (794)
31 KOG0296 Angio-associated migra 99.9 3E-20 6.4E-25 207.9 32.6 159 14-250 62-222 (399)
32 KOG0295 WD40 repeat-containing 99.9 1.6E-21 3.5E-26 217.7 19.7 226 478-728 123-385 (406)
33 PLN00181 protein SPA1-RELATED; 99.9 2.6E-19 5.5E-24 237.3 40.9 141 527-706 632-792 (793)
34 KOG0266 WD40 repeat-containing 99.9 1.4E-20 3E-25 233.3 27.0 233 478-767 174-410 (456)
35 KOG0274 Cdc4 and related F-box 99.9 3.7E-20 8E-25 229.8 28.4 150 527-719 343-494 (537)
36 KOG0284 Polyadenylation factor 99.9 1.2E-21 2.5E-26 221.3 12.2 237 477-776 110-347 (464)
37 KOG0285 Pleiotropic regulator 99.9 9.9E-21 2.1E-25 210.2 18.4 210 500-769 142-351 (460)
38 KOG0293 WD40 repeat-containing 99.9 6.1E-20 1.3E-24 207.0 23.5 84 14-126 222-305 (519)
39 KOG0316 Conserved WD40 repeat- 99.8 1.7E-20 3.7E-25 198.7 17.8 232 480-776 34-267 (307)
40 KOG0315 G-protein beta subunit 99.8 6E-20 1.3E-24 196.2 21.9 229 477-768 12-290 (311)
41 KOG0285 Pleiotropic regulator 99.8 1.2E-20 2.7E-25 209.4 17.1 224 478-766 166-389 (460)
42 KOG1539 WD repeat protein [Gen 99.8 2.6E-18 5.7E-23 208.1 38.1 475 19-708 162-649 (910)
43 KOG0292 Vesicle coat complex C 99.8 5.9E-19 1.3E-23 213.4 30.3 313 15-658 8-322 (1202)
44 KOG0313 Microtubule binding pr 99.8 1.9E-19 4E-24 202.2 23.7 256 431-728 126-398 (423)
45 KOG0274 Cdc4 and related F-box 99.8 9.4E-20 2E-24 226.2 21.5 228 477-774 220-449 (537)
46 KOG0284 Polyadenylation factor 99.8 2.2E-20 4.7E-25 211.0 14.0 221 478-764 153-378 (464)
47 KOG0266 WD40 repeat-containing 99.8 2E-19 4.3E-24 223.1 23.5 203 509-768 159-366 (456)
48 KOG0292 Vesicle coat complex C 99.8 9.8E-20 2.1E-24 220.0 19.2 224 479-767 25-281 (1202)
49 KOG0282 mRNA splicing factor [ 99.8 3.6E-19 7.7E-24 205.4 20.0 141 527-705 356-503 (503)
50 KOG0276 Vesicle coat complex C 99.8 1.7E-19 3.7E-24 211.8 16.9 203 482-726 74-276 (794)
51 KOG1408 WD40 repeat protein [F 99.8 1.8E-17 3.9E-22 196.4 33.7 193 478-708 519-714 (1080)
52 KOG0265 U5 snRNP-specific prot 99.8 5.5E-19 1.2E-23 193.6 19.2 207 505-769 43-249 (338)
53 KOG2106 Uncharacterized conser 99.8 4.1E-16 8.9E-21 180.1 41.9 485 14-765 102-625 (626)
54 PTZ00421 coronin; Provisional 99.8 1.1E-17 2.4E-22 207.5 28.5 185 505-719 71-258 (493)
55 KOG0313 Microtubule binding pr 99.8 1.8E-18 3.9E-23 194.4 18.6 232 477-766 117-376 (423)
56 KOG0275 Conserved WD40 repeat- 99.8 4.1E-19 9E-24 194.3 11.1 228 478-764 228-507 (508)
57 PTZ00420 coronin; Provisional 99.8 3E-17 6.4E-22 204.6 28.8 236 483-766 52-293 (568)
58 KOG0645 WD40 repeat protein [G 99.8 2.9E-17 6.2E-22 178.1 23.8 206 502-765 7-224 (312)
59 KOG0282 mRNA splicing factor [ 99.8 1.5E-18 3.3E-23 200.2 13.3 225 479-764 231-503 (503)
60 KOG0277 Peroxisomal targeting 99.8 8.8E-18 1.9E-22 180.3 17.4 189 526-765 74-264 (311)
61 KOG0275 Conserved WD40 repeat- 99.8 3E-19 6.6E-24 195.3 6.4 166 523-719 221-390 (508)
62 PTZ00421 coronin; Provisional 99.8 3.5E-17 7.5E-22 203.1 24.3 172 564-769 69-248 (493)
63 cd00200 WD40 WD40 domain, foun 99.8 1.2E-16 2.7E-21 180.4 26.5 222 480-764 68-289 (289)
64 PTZ00420 coronin; Provisional 99.8 5.3E-17 1.1E-21 202.4 25.4 141 560-723 64-213 (568)
65 KOG0645 WD40 repeat protein [G 99.8 1.9E-16 4.1E-21 171.8 25.4 189 478-707 30-225 (312)
66 KOG1407 WD40 repeat protein [F 99.8 4.4E-16 9.5E-21 168.1 27.9 128 532-690 166-293 (313)
67 PLN00181 protein SPA1-RELATED; 99.8 5.5E-16 1.2E-20 205.7 35.1 191 477-714 547-745 (793)
68 KOG1445 Tumor-specific antigen 99.7 7.4E-16 1.6E-20 180.7 30.6 198 481-708 599-799 (1012)
69 KOG0296 Angio-associated migra 99.7 1E-16 2.2E-21 179.9 22.5 209 501-756 56-264 (399)
70 KOG0277 Peroxisomal targeting 99.7 2E-17 4.3E-22 177.6 15.8 201 478-720 76-279 (311)
71 KOG0283 WD40 repeat-containing 99.7 6.6E-17 1.4E-21 198.3 20.5 216 505-765 262-531 (712)
72 KOG0264 Nucleosome remodeling 99.7 1.8E-16 3.8E-21 182.9 19.6 240 478-765 140-403 (422)
73 KOG0267 Microtubule severing p 99.7 9E-18 2E-22 200.7 9.0 212 505-775 24-235 (825)
74 KOG0973 Histone transcription 99.7 5.6E-16 1.2E-20 194.2 24.9 236 501-764 61-310 (942)
75 KOG0301 Phospholipase A2-activ 99.7 8.5E-17 1.9E-21 192.1 16.6 221 478-766 28-249 (745)
76 KOG0308 Conserved WD40 repeat- 99.7 3.2E-16 6.8E-21 186.0 19.7 241 429-709 46-287 (735)
77 KOG0643 Translation initiation 99.7 7.3E-15 1.6E-19 159.0 28.1 143 527-707 161-317 (327)
78 KOG0300 WD40 repeat-containing 99.7 1.4E-16 2.9E-21 174.6 14.7 210 500-769 139-389 (481)
79 KOG2048 WD40 repeat protein [G 99.7 1.1E-12 2.4E-17 157.4 49.0 494 17-708 26-549 (691)
80 KOG0316 Conserved WD40 repeat- 99.7 9.3E-16 2E-20 163.1 20.2 197 477-721 73-271 (307)
81 KOG0288 WD40 repeat protein Ti 99.7 4.3E-16 9.3E-21 177.0 18.3 234 477-763 189-458 (459)
82 KOG0293 WD40 repeat-containing 99.7 6E-16 1.3E-20 175.2 19.3 242 458-766 226-513 (519)
83 KOG0310 Conserved WD40 repeat- 99.7 2.6E-16 5.6E-21 182.4 16.8 204 505-767 64-269 (487)
84 KOG0305 Anaphase promoting com 99.7 4.6E-16 1E-20 187.1 19.1 229 477-767 231-462 (484)
85 KOG0269 WD40 repeat-containing 99.7 1.3E-16 2.8E-21 192.5 14.1 231 478-762 103-336 (839)
86 KOG0301 Phospholipase A2-activ 99.7 5.2E-16 1.1E-20 185.5 18.5 214 478-765 74-287 (745)
87 KOG0288 WD40 repeat protein Ti 99.7 4.8E-16 1E-20 176.6 17.2 121 560-704 332-458 (459)
88 KOG1063 RNA polymerase II elon 99.7 9.7E-14 2.1E-18 166.2 37.0 233 478-768 331-650 (764)
89 KOG0308 Conserved WD40 repeat- 99.7 2.8E-16 6.2E-21 186.4 15.6 234 478-768 40-287 (735)
90 KOG0269 WD40 repeat-containing 99.7 2E-16 4.3E-21 190.9 13.4 193 526-765 101-295 (839)
91 KOG0294 WD40 repeat-containing 99.7 2.3E-15 5E-20 166.3 19.9 206 503-766 37-281 (362)
92 KOG0640 mRNA cleavage stimulat 99.7 5.2E-16 1.1E-20 170.1 14.2 222 500-765 103-334 (430)
93 KOG0647 mRNA export protein (c 99.7 1.8E-14 3.9E-19 158.6 25.8 85 12-126 23-108 (347)
94 KOG0264 Nucleosome remodeling 99.7 1.9E-15 4.2E-20 174.4 17.5 192 477-707 192-404 (422)
95 KOG0267 Microtubule severing p 99.6 2E-16 4.3E-21 189.4 9.1 183 504-728 65-247 (825)
96 KOG0289 mRNA splicing factor [ 99.6 6.2E-15 1.3E-19 168.3 20.3 191 483-719 239-431 (506)
97 KOG0278 Serine/threonine kinas 99.6 5.1E-16 1.1E-20 166.2 10.7 208 498-765 48-296 (334)
98 KOG0640 mRNA cleavage stimulat 99.6 1.8E-15 4E-20 165.8 14.3 177 500-718 163-346 (430)
99 KOG1332 Vesicle coat complex C 99.6 2.8E-15 6E-20 160.5 15.3 198 523-765 21-240 (299)
100 KOG0302 Ribosome Assembly prot 99.6 1.7E-15 3.7E-20 170.3 13.9 168 500-708 202-379 (440)
101 KOG1446 Histone H3 (Lys4) meth 99.6 4E-14 8.8E-19 157.5 24.2 234 478-774 29-270 (311)
102 KOG0643 Translation initiation 99.6 3E-14 6.6E-19 154.3 21.7 202 505-766 6-220 (327)
103 KOG0278 Serine/threonine kinas 99.6 3.1E-15 6.7E-20 160.2 12.6 189 482-711 78-301 (334)
104 KOG0973 Histone transcription 99.6 1.1E-14 2.3E-19 183.0 18.4 190 509-728 13-222 (942)
105 KOG0300 WD40 repeat-containing 99.6 2.1E-14 4.6E-19 157.6 17.9 210 478-719 163-399 (481)
106 KOG2106 Uncharacterized conser 99.6 2.4E-11 5.2E-16 141.3 43.6 128 564-719 362-490 (626)
107 KOG0772 Uncharacterized conser 99.6 6.9E-14 1.5E-18 162.4 22.3 205 478-721 284-505 (641)
108 KOG1407 WD40 repeat protein [F 99.6 1.4E-14 3E-19 156.6 15.3 174 504-716 15-270 (313)
109 KOG2048 WD40 repeat protein [G 99.6 1.5E-11 3.2E-16 147.9 42.4 150 98-308 33-183 (691)
110 KOG0289 mRNA splicing factor [ 99.6 1.9E-14 4.1E-19 164.4 17.0 201 510-769 220-422 (506)
111 KOG0270 WD40 repeat-containing 99.6 2E-14 4.3E-19 165.2 16.7 205 525-766 192-404 (463)
112 KOG0646 WD40 repeat protein [G 99.6 3.1E-14 6.7E-19 164.5 18.2 212 480-727 98-327 (476)
113 KOG0294 WD40 repeat-containing 99.6 7.2E-14 1.6E-18 154.6 20.0 193 478-709 56-283 (362)
114 KOG0310 Conserved WD40 repeat- 99.6 3.9E-14 8.5E-19 164.5 18.3 197 479-725 84-285 (487)
115 KOG0646 WD40 repeat protein [G 99.6 7.1E-14 1.5E-18 161.6 19.8 225 481-767 57-308 (476)
116 KOG0641 WD40 repeat protein [G 99.6 5.2E-13 1.1E-17 141.0 24.3 207 504-765 131-348 (350)
117 KOG0283 WD40 repeat-containing 99.6 9.6E-14 2.1E-18 170.8 21.9 209 500-769 360-579 (712)
118 KOG0641 WD40 repeat protein [G 99.6 1.9E-13 4E-18 144.3 20.8 191 505-729 85-283 (350)
119 KOG0268 Sof1-like rRNA process 99.5 3.3E-14 7.1E-19 159.4 13.7 244 477-770 81-349 (433)
120 KOG0302 Ribosome Assembly prot 99.5 1.5E-13 3.2E-18 155.0 18.7 201 527-765 167-377 (440)
121 KOG0772 Uncharacterized conser 99.5 1.1E-13 2.4E-18 160.7 18.0 214 504-771 162-399 (641)
122 KOG0299 U3 snoRNP-associated p 99.5 1.6E-13 3.4E-18 158.4 18.2 167 506-716 199-365 (479)
123 KOG0305 Anaphase promoting com 99.5 1.7E-13 3.7E-18 165.2 19.0 197 485-728 197-396 (484)
124 KOG0303 Actin-binding protein 99.5 1E-13 2.2E-18 156.9 14.0 136 563-720 74-216 (472)
125 KOG4283 Transcription-coupled 99.5 5.8E-13 1.3E-17 145.8 18.7 231 506-767 40-277 (397)
126 KOG0650 WD40 repeat nucleolar 99.5 1E-12 2.2E-17 155.2 22.0 143 523-704 574-732 (733)
127 KOG1274 WD40 repeat protein [G 99.5 1.9E-12 4.1E-17 159.8 25.0 186 477-708 68-263 (933)
128 KOG1036 Mitotic spindle checkp 99.5 1.2E-11 2.7E-16 137.2 27.7 95 527-647 191-294 (323)
129 KOG0268 Sof1-like rRNA process 99.5 1.1E-13 2.3E-18 155.4 11.4 200 504-766 61-302 (433)
130 KOG1332 Vesicle coat complex C 99.5 6.1E-13 1.3E-17 142.8 15.4 200 477-707 25-241 (299)
131 KOG1446 Histone H3 (Lys4) meth 99.5 6E-12 1.3E-16 140.4 23.6 199 483-729 78-285 (311)
132 KOG2445 Nuclear pore complex c 99.5 3E-12 6.6E-17 141.5 20.9 245 477-765 27-317 (361)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 1.9E-10 4.2E-15 133.5 37.3 89 574-679 210-300 (300)
134 KOG1273 WD40 repeat protein [G 99.5 4.2E-12 9E-17 140.4 21.3 238 19-310 26-281 (405)
135 KOG1273 WD40 repeat protein [G 99.4 4.2E-12 9.1E-17 140.4 19.9 166 527-724 37-297 (405)
136 KOG0647 mRNA export protein (c 99.4 4.6E-12 1E-16 139.8 19.7 205 509-765 27-280 (347)
137 KOG0299 U3 snoRNP-associated p 99.4 1.9E-12 4.1E-17 149.7 16.8 214 503-765 136-355 (479)
138 KOG2096 WD40 repeat protein [G 99.4 1.3E-11 2.9E-16 136.6 22.5 187 478-705 202-400 (420)
139 KOG0321 WD40 repeat-containing 99.4 2E-12 4.4E-17 153.9 16.7 245 477-768 114-393 (720)
140 KOG4283 Transcription-coupled 99.4 4.1E-12 9E-17 139.2 17.5 220 506-765 98-333 (397)
141 KOG0303 Actin-binding protein 99.4 7.1E-12 1.5E-16 142.2 19.9 173 505-708 77-250 (472)
142 KOG1036 Mitotic spindle checkp 99.4 7.8E-12 1.7E-16 138.8 19.0 199 478-728 28-283 (323)
143 KOG0639 Transducin-like enhanc 99.4 4.1E-12 9E-17 146.9 16.8 227 469-751 474-700 (705)
144 KOG0270 WD40 repeat-containing 99.4 6.2E-12 1.3E-16 145.0 17.5 164 506-708 240-405 (463)
145 KOG0307 Vesicle coat complex C 99.4 1.4E-12 3.1E-17 164.6 12.4 217 477-730 82-307 (1049)
146 KOG4378 Nuclear protein COP1 [ 99.4 8E-12 1.7E-16 144.6 17.4 202 483-729 99-303 (673)
147 KOG0321 WD40 repeat-containing 99.4 7.6E-12 1.6E-16 149.1 17.6 258 503-831 94-397 (720)
148 KOG1274 WD40 repeat protein [G 99.4 2.7E-11 6E-16 149.7 23.1 229 478-770 28-266 (933)
149 KOG0639 Transducin-like enhanc 99.4 2E-12 4.4E-17 149.4 12.2 206 479-728 434-642 (705)
150 KOG0307 Vesicle coat complex C 99.4 1.2E-12 2.6E-17 165.2 10.1 200 527-769 82-287 (1049)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.2E-09 2.6E-14 126.8 34.0 123 572-718 158-290 (300)
152 KOG2096 WD40 repeat protein [G 99.3 2.1E-11 4.6E-16 135.0 17.6 206 503-765 80-307 (420)
153 KOG0642 Cell-cycle nuclear pro 99.3 7.2E-12 1.6E-16 148.0 14.7 209 504-765 289-560 (577)
154 KOG2055 WD40 repeat protein [G 99.3 2.7E-10 5.9E-15 131.9 25.7 142 527-707 358-512 (514)
155 KOG0649 WD40 repeat protein [G 99.3 1.1E-10 2.3E-15 125.5 20.3 187 503-724 56-254 (325)
156 KOG4378 Nuclear protein COP1 [ 99.3 3.3E-11 7.1E-16 139.6 16.4 239 478-777 50-291 (673)
157 KOG0649 WD40 repeat protein [G 99.3 1.4E-10 3E-15 124.6 18.5 201 527-768 24-237 (325)
158 KOG0642 Cell-cycle nuclear pro 99.3 4E-11 8.7E-16 141.8 15.9 210 477-720 308-574 (577)
159 KOG4328 WD40 protein [Function 99.3 3E-11 6.6E-16 139.6 13.5 166 504-707 181-399 (498)
160 KOG1034 Transcriptional repres 99.3 4.4E-11 9.5E-16 133.4 14.2 141 527-706 107-278 (385)
161 KOG2445 Nuclear pore complex c 99.3 5.5E-10 1.2E-14 123.9 22.0 217 506-767 10-257 (361)
162 KOG1034 Transcriptional repres 99.2 2E-10 4.3E-15 128.3 17.2 123 569-709 88-213 (385)
163 KOG0322 G-protein beta subunit 99.2 3E-10 6.5E-15 123.6 17.7 121 506-656 202-322 (323)
164 KOG1963 WD40 repeat protein [G 99.2 7.6E-09 1.7E-13 128.6 32.3 224 22-302 22-316 (792)
165 KOG4328 WD40 protein [Function 99.2 1.6E-10 3.6E-15 133.7 16.2 217 482-724 207-467 (498)
166 KOG2919 Guanine nucleotide-bin 99.2 6.2E-10 1.3E-14 124.0 19.1 192 527-770 125-331 (406)
167 KOG1445 Tumor-specific antigen 99.2 4.9E-11 1.1E-15 140.9 10.1 149 531-711 599-754 (1012)
168 KOG1009 Chromatin assembly com 99.2 1.6E-10 3.4E-15 132.3 13.5 155 527-710 28-198 (434)
169 KOG1963 WD40 repeat protein [G 99.2 6.2E-09 1.3E-13 129.4 28.1 167 14-250 203-377 (792)
170 KOG2919 Guanine nucleotide-bin 99.1 1.9E-09 4E-14 120.2 19.3 208 478-720 126-341 (406)
171 KOG1188 WD40 repeat protein [G 99.1 7.4E-10 1.6E-14 124.5 15.6 192 527-769 42-245 (376)
172 COG2319 FOG: WD40 repeat [Gene 99.1 8E-09 1.7E-13 122.5 24.9 196 484-725 133-334 (466)
173 KOG1007 WD repeat protein TSSC 99.1 2.7E-09 5.8E-14 117.4 18.8 187 479-707 138-361 (370)
174 COG2319 FOG: WD40 repeat [Gene 99.1 1.2E-08 2.7E-13 120.9 25.9 202 483-728 85-293 (466)
175 KOG0644 Uncharacterized conser 99.1 3.5E-11 7.5E-16 146.4 3.6 191 501-729 182-405 (1113)
176 KOG1009 Chromatin assembly com 99.1 8.6E-10 1.9E-14 126.4 13.4 136 570-727 13-173 (434)
177 KOG1188 WD40 repeat protein [G 99.1 1.7E-09 3.7E-14 121.7 14.3 200 477-717 42-252 (376)
178 KOG1007 WD repeat protein TSSC 99.0 2E-09 4.4E-14 118.3 13.7 164 508-708 122-290 (370)
179 KOG0290 Conserved WD40 repeat- 99.0 4.4E-09 9.4E-14 116.0 14.6 213 506-767 93-319 (364)
180 KOG1517 Guanine nucleotide bin 99.0 3.9E-08 8.5E-13 123.1 24.0 191 478-710 1180-1384(1387)
181 KOG0322 G-protein beta subunit 99.0 1.2E-09 2.7E-14 118.9 9.7 152 527-706 167-322 (323)
182 KOG0771 Prolactin regulatory e 99.0 3.4E-09 7.4E-14 122.5 13.5 194 20-299 148-345 (398)
183 KOG1587 Cytoplasmic dynein int 99.0 2.9E-08 6.3E-13 123.6 21.3 258 400-708 245-517 (555)
184 KOG2394 WD40 protein DMR-N9 [G 99.0 6.3E-09 1.4E-13 122.5 14.3 152 510-679 220-384 (636)
185 KOG1310 WD40 repeat protein [G 99.0 1.6E-09 3.4E-14 127.2 9.2 126 563-709 43-180 (758)
186 KOG0290 Conserved WD40 repeat- 98.9 1E-08 2.2E-13 113.2 14.6 166 507-708 148-319 (364)
187 KOG2394 WD40 protein DMR-N9 [G 98.9 4.6E-09 1E-13 123.7 12.7 170 527-729 187-384 (636)
188 KOG0650 WD40 repeat nucleolar 98.9 2.6E-08 5.7E-13 118.6 18.1 167 561-765 391-594 (733)
189 KOG1538 Uncharacterized conser 98.9 2.5E-07 5.5E-12 110.8 26.0 278 12-377 8-294 (1081)
190 PF08662 eIF2A: Eukaryotic tra 98.9 6.3E-08 1.4E-12 106.8 19.1 124 569-715 58-186 (194)
191 KOG2055 WD40 repeat protein [G 98.9 6.1E-08 1.3E-12 112.9 18.5 176 509-728 213-394 (514)
192 KOG1310 WD40 repeat protein [G 98.9 5.3E-09 1.1E-13 122.9 8.8 166 503-707 44-231 (758)
193 KOG0771 Prolactin regulatory e 98.8 1.9E-08 4.1E-13 116.5 12.9 151 513-706 148-353 (398)
194 KOG0974 WD-repeat protein WDR6 98.8 3.6E-08 7.9E-13 124.5 15.8 143 527-710 147-291 (967)
195 KOG0644 Uncharacterized conser 98.8 1.2E-09 2.6E-14 133.4 2.6 120 561-707 181-300 (1113)
196 KOG1587 Cytoplasmic dynein int 98.8 2.9E-07 6.2E-12 114.9 22.6 206 478-710 258-475 (555)
197 KOG1240 Protein kinase contain 98.8 4.5E-07 9.7E-12 115.8 22.4 239 496-767 1035-1335(1431)
198 KOG1538 Uncharacterized conser 98.8 3.3E-07 7.2E-12 109.8 19.8 182 500-709 44-295 (1081)
199 KOG4547 WD40 repeat-containing 98.7 2.3E-07 5E-12 111.6 18.0 191 478-708 8-221 (541)
200 KOG2110 Uncharacterized conser 98.7 6.3E-07 1.4E-11 102.4 19.0 119 569-710 128-251 (391)
201 KOG1517 Guanine nucleotide bin 98.7 5.3E-07 1.1E-11 113.4 19.7 197 478-709 1079-1289(1387)
202 KOG1524 WD40 repeat-containing 98.7 6.1E-08 1.3E-12 113.9 10.1 161 527-729 77-237 (737)
203 KOG4227 WD40 repeat protein [G 98.7 2.6E-07 5.6E-12 105.0 14.4 173 502-710 49-228 (609)
204 KOG1524 WD40 repeat-containing 98.7 1.1E-07 2.4E-12 111.9 11.5 152 501-690 96-247 (737)
205 PRK01742 tolB translocation pr 98.6 7.9E-07 1.7E-11 110.4 19.4 190 485-728 228-424 (429)
206 KOG0974 WD-repeat protein WDR6 98.6 5.4E-07 1.2E-11 114.2 17.1 146 591-769 145-291 (967)
207 KOG1523 Actin-related protein 98.6 9.6E-07 2.1E-11 99.3 16.8 192 479-710 26-239 (361)
208 KOG2139 WD40 repeat protein [G 98.6 1.2E-06 2.6E-11 99.6 17.4 184 478-689 113-300 (445)
209 KOG1272 WD40-repeat-containing 98.6 4.5E-08 9.8E-13 113.9 6.1 181 503-729 204-389 (545)
210 KOG1523 Actin-related protein 98.6 5.4E-07 1.2E-11 101.2 13.9 159 509-706 10-175 (361)
211 KOG4227 WD40 repeat protein [G 98.6 1.9E-07 4.2E-12 106.0 10.3 126 562-710 48-182 (609)
212 PF02239 Cytochrom_D1: Cytochr 98.6 0.00022 4.8E-09 86.6 36.7 110 31-208 9-118 (369)
213 KOG4547 WD40 repeat-containing 98.6 2.8E-06 6E-11 102.6 19.8 122 591-728 70-193 (541)
214 KOG1272 WD40-repeat-containing 98.5 1.3E-07 2.8E-12 110.1 7.9 134 560-717 200-333 (545)
215 KOG1334 WD40 repeat protein [G 98.5 8.8E-07 1.9E-11 104.0 13.3 112 13-155 139-254 (559)
216 KOG2111 Uncharacterized conser 98.5 4.1E-06 8.9E-11 94.3 17.7 175 485-709 75-258 (346)
217 KOG2139 WD40 repeat protein [G 98.5 3.4E-06 7.4E-11 96.0 16.0 157 523-719 106-281 (445)
218 PF08662 eIF2A: Eukaryotic tra 98.4 9.7E-06 2.1E-10 89.6 19.2 136 603-765 39-178 (194)
219 KOG2110 Uncharacterized conser 98.4 2.7E-05 5.9E-10 89.4 22.4 117 508-658 128-249 (391)
220 PRK01742 tolB translocation pr 98.4 6.4E-06 1.4E-10 102.3 18.8 176 485-713 184-367 (429)
221 PF02239 Cytochrom_D1: Cytochr 98.4 0.00015 3.3E-09 88.0 30.0 103 601-716 249-356 (369)
222 KOG1240 Protein kinase contain 98.4 6.8E-06 1.5E-10 105.4 18.4 152 555-729 1034-1248(1431)
223 KOG3881 Uncharacterized conser 98.4 1.5E-05 3.3E-10 92.0 18.2 162 523-713 159-326 (412)
224 KOG2321 WD40 repeat protein [G 98.3 6.3E-06 1.4E-10 98.5 14.7 156 558-745 163-333 (703)
225 KOG0280 Uncharacterized conser 98.3 8.2E-06 1.8E-10 91.1 14.0 148 527-709 135-286 (339)
226 KOG4497 Uncharacterized conser 98.3 4.4E-05 9.5E-10 86.1 19.5 102 572-690 320-423 (447)
227 KOG2111 Uncharacterized conser 98.3 4.3E-05 9.2E-10 86.4 19.5 104 527-658 150-257 (346)
228 PRK03629 tolB translocation pr 98.2 8.3E-05 1.8E-09 92.4 21.9 163 523-723 250-421 (429)
229 KOG1409 Uncharacterized conser 98.2 2.8E-05 6E-10 88.4 15.8 193 479-711 40-274 (404)
230 PRK11028 6-phosphogluconolacto 98.1 0.0001 2.2E-09 88.2 20.5 116 573-711 177-310 (330)
231 PRK04922 tolB translocation pr 98.1 0.00012 2.5E-09 91.2 21.0 168 505-712 199-373 (433)
232 KOG1334 WD40 repeat protein [G 98.1 7.5E-06 1.6E-10 96.4 9.5 230 478-765 157-465 (559)
233 PRK04922 tolB translocation pr 98.1 0.00018 4E-09 89.5 22.2 159 523-719 255-422 (433)
234 KOG1064 RAVE (regulator of V-A 98.1 3.5E-06 7.7E-11 110.9 6.9 180 478-717 2223-2408(2439)
235 PRK05137 tolB translocation pr 98.1 0.00016 3.5E-09 90.0 21.6 131 562-714 193-329 (435)
236 PRK02889 tolB translocation pr 98.1 0.00026 5.7E-09 88.0 23.2 168 506-713 192-366 (427)
237 KOG2321 WD40 repeat protein [G 98.1 0.00013 2.9E-09 87.5 19.0 107 594-714 148-265 (703)
238 PRK05137 tolB translocation pr 98.1 0.00024 5.1E-09 88.6 22.3 166 505-710 197-369 (435)
239 PRK03629 tolB translocation pr 98.1 0.0003 6.6E-09 87.4 23.0 167 506-712 195-368 (429)
240 PRK11028 6-phosphogluconolacto 98.1 0.00012 2.5E-09 87.7 18.7 115 572-709 127-260 (330)
241 KOG1409 Uncharacterized conser 98.0 2.8E-05 6.2E-10 88.4 11.7 102 529-658 169-271 (404)
242 KOG2315 Predicted translation 98.0 0.0056 1.2E-07 74.3 31.3 122 570-714 270-396 (566)
243 PRK02889 tolB translocation pr 98.0 0.00024 5.2E-09 88.3 21.1 160 523-720 247-415 (427)
244 KOG4190 Uncharacterized conser 98.0 1.1E-05 2.4E-10 95.1 8.1 180 502-716 728-915 (1034)
245 KOG3881 Uncharacterized conser 98.0 0.00023 5E-09 82.5 18.5 192 527-767 117-321 (412)
246 KOG3914 WD repeat protein WDR4 98.0 5.6E-05 1.2E-09 88.0 13.1 109 592-716 123-232 (390)
247 KOG2695 WD40 repeat protein [G 98.0 2.3E-05 4.9E-10 89.1 9.5 127 569-719 251-388 (425)
248 KOG1912 WD40 repeat protein [G 98.0 0.0011 2.3E-08 82.3 23.8 107 592-713 438-557 (1062)
249 PF00400 WD40: WD domain, G-be 97.9 3.3E-05 7.2E-10 61.7 6.6 38 561-607 2-39 (39)
250 PRK01029 tolB translocation pr 97.9 0.0012 2.7E-08 82.0 22.7 133 562-715 272-411 (428)
251 KOG1064 RAVE (regulator of V-A 97.8 4.8E-05 1E-09 100.8 10.3 147 527-717 2222-2376(2439)
252 PF00400 WD40: WD domain, G-be 97.8 4E-05 8.6E-10 61.2 6.1 39 659-705 1-39 (39)
253 KOG2066 Vacuolar assembly/sort 97.8 0.00015 3.2E-09 90.6 13.1 176 523-745 47-225 (846)
254 TIGR02800 propeller_TolB tol-p 97.8 0.0012 2.7E-08 81.5 21.2 124 566-711 229-358 (417)
255 KOG1354 Serine/threonine prote 97.7 0.00011 2.4E-09 83.6 9.1 129 567-719 161-314 (433)
256 TIGR02800 propeller_TolB tol-p 97.7 0.0028 6.2E-08 78.2 21.5 184 485-717 214-406 (417)
257 PRK00178 tolB translocation pr 97.6 0.0039 8.4E-08 77.6 22.0 165 507-711 196-367 (430)
258 KOG0280 Uncharacterized conser 97.6 0.00094 2E-08 75.1 14.4 118 573-712 124-247 (339)
259 PRK00178 tolB translocation pr 97.6 0.0026 5.6E-08 79.2 20.3 130 563-714 191-326 (430)
260 PRK01029 tolB translocation pr 97.6 0.0027 5.8E-08 79.0 19.6 125 570-714 230-366 (428)
261 KOG2695 WD40 repeat protein [G 97.6 0.00034 7.3E-09 79.9 10.1 118 527-667 266-386 (425)
262 KOG3914 WD repeat protein WDR4 97.5 0.00034 7.3E-09 81.6 10.3 87 564-666 145-232 (390)
263 PRK04792 tolB translocation pr 97.5 0.0043 9.3E-08 77.7 20.0 128 564-713 211-344 (448)
264 TIGR02658 TTQ_MADH_Hv methylam 97.5 0.3 6.4E-06 58.9 34.2 81 622-716 248-339 (352)
265 KOG2315 Predicted translation 97.5 0.097 2.1E-06 64.0 29.8 115 527-680 286-411 (566)
266 KOG4714 Nucleoporin [Nuclear s 97.5 0.00023 5.1E-09 78.5 7.3 94 602-708 160-255 (319)
267 KOG2041 WD40 repeat protein [G 97.4 0.041 8.8E-07 68.1 26.0 119 563-707 497-619 (1189)
268 KOG2041 WD40 repeat protein [G 97.4 0.00044 9.6E-09 84.5 9.4 169 510-708 15-187 (1189)
269 PRK04792 tolB translocation pr 97.4 0.0086 1.9E-07 75.0 21.4 152 523-711 225-386 (448)
270 KOG4190 Uncharacterized conser 97.4 0.00035 7.5E-09 82.9 8.1 172 12-250 731-908 (1034)
271 KOG0309 Conserved WD40 repeat- 97.4 0.00065 1.4E-08 83.6 10.1 160 573-768 70-234 (1081)
272 PF10282 Lactonase: Lactonase, 97.3 0.22 4.8E-06 60.2 31.3 123 571-715 192-332 (345)
273 COG4946 Uncharacterized protei 97.2 0.02 4.4E-07 68.0 19.8 129 567-715 356-485 (668)
274 KOG1275 PAB-dependent poly(A) 97.2 0.0033 7.1E-08 79.6 13.4 140 526-705 188-340 (1118)
275 KOG1912 WD40 repeat protein [G 97.1 0.0053 1.1E-07 76.4 14.1 138 523-679 23-165 (1062)
276 KOG4714 Nucleoporin [Nuclear s 97.1 0.0016 3.5E-08 72.1 8.6 74 572-658 181-255 (319)
277 PF10282 Lactonase: Lactonase, 97.0 0.15 3.3E-06 61.6 25.7 201 18-300 88-313 (345)
278 KOG0882 Cyclophilin-related pe 97.0 0.001 2.3E-08 78.2 6.5 171 507-717 7-241 (558)
279 COG2706 3-carboxymuconate cycl 97.0 0.2 4.3E-06 58.7 24.6 205 20-301 92-313 (346)
280 PLN02919 haloacid dehalogenase 97.0 0.039 8.5E-07 75.8 22.2 116 573-711 742-892 (1057)
281 KOG4532 WD40-like repeat conta 96.9 0.049 1.1E-06 61.0 18.2 147 527-714 130-289 (344)
282 PF04762 IKI3: IKI3 family; I 96.9 2.8 6E-05 57.2 38.1 115 570-707 426-564 (928)
283 KOG0309 Conserved WD40 repeat- 96.9 0.002 4.4E-08 79.4 7.9 128 561-710 105-235 (1081)
284 PLN02919 haloacid dehalogenase 96.8 0.15 3.2E-06 70.3 25.6 117 574-713 686-839 (1057)
285 PF11768 DUF3312: Protein of u 96.8 0.0079 1.7E-07 74.1 11.7 76 620-711 258-333 (545)
286 COG5354 Uncharacterized protei 96.8 0.49 1.1E-05 57.5 26.0 120 568-708 272-396 (561)
287 TIGR03300 assembly_YfgL outer 96.8 0.76 1.6E-05 56.2 29.3 109 591-719 241-350 (377)
288 PF11768 DUF3312: Protein of u 96.7 0.0055 1.2E-07 75.4 9.6 84 1-122 248-331 (545)
289 KOG1354 Serine/threonine prote 96.7 0.011 2.3E-07 68.0 11.1 171 506-711 161-363 (433)
290 KOG4497 Uncharacterized conser 96.6 0.0054 1.2E-07 69.8 7.7 114 576-712 14-127 (447)
291 COG2706 3-carboxymuconate cycl 96.4 1.4 3E-05 51.9 25.8 247 30-378 4-276 (346)
292 COG4946 Uncharacterized protei 96.3 0.18 3.9E-06 60.3 18.5 146 507-688 357-507 (668)
293 KOG1832 HIV-1 Vpr-binding prot 96.2 0.0038 8.3E-08 78.2 4.3 131 561-718 1092-1226(1516)
294 COG5170 CDC55 Serine/threonine 96.2 0.0049 1.1E-07 69.5 4.6 129 567-719 169-322 (460)
295 TIGR02658 TTQ_MADH_Hv methylam 96.2 0.19 4.2E-06 60.4 18.4 103 601-717 27-146 (352)
296 KOG4532 WD40-like repeat conta 96.2 0.09 2E-06 58.9 14.0 146 527-709 86-235 (344)
297 KOG1645 RING-finger-containing 96.2 0.013 2.8E-07 68.7 7.9 94 603-710 175-269 (463)
298 PRK04043 tolB translocation pr 96.1 0.47 1E-05 59.0 21.6 122 572-715 189-317 (419)
299 PF13360 PQQ_2: PQQ-like domai 96.0 0.18 3.9E-06 56.9 16.6 112 591-719 36-152 (238)
300 PRK04043 tolB translocation pr 96.0 1.4 3E-05 54.9 25.4 129 569-717 231-366 (419)
301 smart00320 WD40 WD40 repeats. 95.9 0.02 4.2E-07 43.1 5.5 38 561-607 3-40 (40)
302 KOG1275 PAB-dependent poly(A) 95.8 0.1 2.2E-06 66.9 14.0 99 591-706 187-295 (1118)
303 smart00320 WD40 WD40 repeats. 95.8 0.021 4.7E-07 42.8 5.5 39 659-705 2-40 (40)
304 PF13360 PQQ_2: PQQ-like domai 95.8 1.1 2.5E-05 50.3 21.8 103 591-713 122-236 (238)
305 KOG2314 Translation initiation 95.8 0.055 1.2E-06 65.7 11.0 111 574-711 214-338 (698)
306 PF04762 IKI3: IKI3 family; I 95.7 14 0.0003 50.6 51.5 81 7-120 63-150 (928)
307 KOG0882 Cyclophilin-related pe 95.6 0.1 2.2E-06 62.1 12.0 207 17-300 10-223 (558)
308 KOG1832 HIV-1 Vpr-binding prot 95.5 0.0085 1.8E-07 75.3 3.3 162 504-716 1096-1264(1516)
309 TIGR03300 assembly_YfgL outer 95.5 0.35 7.6E-06 59.1 17.5 107 591-715 105-216 (377)
310 KOG4640 Anaphase-promoting com 95.3 0.064 1.4E-06 66.4 9.5 78 622-714 21-99 (665)
311 PF15492 Nbas_N: Neuroblastoma 95.3 1.8 3.8E-05 49.8 20.1 85 12-120 39-127 (282)
312 KOG2114 Vacuolar assembly/sort 95.2 1 2.2E-05 58.0 19.9 127 570-720 125-257 (933)
313 KOG1645 RING-finger-containing 95.2 0.027 5.8E-07 66.2 5.7 124 560-707 183-315 (463)
314 PF08450 SGL: SMP-30/Gluconola 95.2 4.5 9.9E-05 46.2 24.0 132 570-727 85-232 (246)
315 KOG2114 Vacuolar assembly/sort 95.2 1.9 4.2E-05 55.6 21.9 99 23-155 30-145 (933)
316 PF14783 BBS2_Mid: Ciliary BBS 94.7 1.5 3.3E-05 43.7 15.5 100 573-690 2-105 (111)
317 PF07433 DUF1513: Protein of u 94.7 2.7 5.8E-05 49.5 20.1 126 563-716 49-256 (305)
318 COG5170 CDC55 Serine/threonine 94.6 0.35 7.6E-06 55.2 12.1 83 15-122 25-119 (460)
319 KOG2066 Vacuolar assembly/sort 94.5 0.64 1.4E-05 59.4 15.5 142 527-708 85-234 (846)
320 PF15492 Nbas_N: Neuroblastoma 94.4 11 0.00024 43.5 23.4 128 572-711 45-192 (282)
321 PF08596 Lgl_C: Lethal giant l 94.1 7.4 0.00016 48.1 23.3 224 511-770 3-294 (395)
322 PF07433 DUF1513: Protein of u 94.0 4.9 0.00011 47.3 20.4 152 16-222 4-171 (305)
323 KOG4640 Anaphase-promoting com 93.7 0.27 5.8E-06 61.2 9.8 91 572-678 22-114 (665)
324 KOG2314 Translation initiation 93.6 0.25 5.4E-06 60.3 9.1 85 624-717 213-300 (698)
325 PF14783 BBS2_Mid: Ciliary BBS 92.7 3.6 7.7E-05 41.2 14.1 107 512-652 2-109 (111)
326 COG5354 Uncharacterized protei 92.6 0.37 8.1E-06 58.5 8.5 114 569-710 31-162 (561)
327 KOG2444 WD40 repeat protein [G 92.3 0.23 4.9E-06 55.1 5.8 103 527-657 72-177 (238)
328 PF08450 SGL: SMP-30/Gluconola 92.2 12 0.00026 42.7 20.4 109 573-707 42-164 (246)
329 KOG3617 WD40 and TPR repeat-co 91.9 0.26 5.5E-06 62.5 6.2 99 591-707 27-131 (1416)
330 KOG3621 WD40 repeat-containing 91.8 0.61 1.3E-05 58.8 9.4 104 591-708 45-155 (726)
331 PF08553 VID27: VID27 cytoplas 91.8 2.3 5E-05 56.2 15.0 132 555-706 509-646 (794)
332 KOG2444 WD40 repeat protein [G 91.6 0.43 9.4E-06 53.0 6.9 92 591-687 70-163 (238)
333 KOG3617 WD40 and TPR repeat-co 91.5 0.3 6.6E-06 61.9 6.2 70 573-657 62-131 (1416)
334 PF12894 Apc4_WD40: Anaphase-p 91.0 0.57 1.2E-05 39.5 5.5 38 9-46 4-41 (47)
335 PF08596 Lgl_C: Lethal giant l 90.8 8.8 0.00019 47.4 18.0 182 508-718 85-301 (395)
336 KOG4649 PQQ (pyrrolo-quinoline 90.7 25 0.00054 40.1 19.3 70 591-666 63-132 (354)
337 KOG1920 IkappaB kinase complex 90.7 12 0.00027 50.4 19.8 158 510-710 69-276 (1265)
338 KOG1008 Uncharacterized conser 90.6 0.079 1.7E-06 65.5 0.2 142 527-706 72-224 (783)
339 PRK11138 outer membrane biogen 90.2 6.2 0.00013 48.7 16.4 112 591-714 160-281 (394)
340 KOG2079 Vacuolar assembly/sort 89.9 0.6 1.3E-05 61.3 7.0 82 639-728 99-181 (1206)
341 KOG4649 PQQ (pyrrolo-quinoline 89.9 11 0.00023 42.9 15.6 109 591-715 23-131 (354)
342 KOG2079 Vacuolar assembly/sort 88.5 1.5 3.3E-05 57.8 9.1 94 591-690 99-196 (1206)
343 PRK11138 outer membrane biogen 87.9 12 0.00026 46.1 16.6 109 591-715 120-231 (394)
344 PF04053 Coatomer_WDAD: Coatom 86.6 9.4 0.0002 47.8 14.4 103 573-707 71-173 (443)
345 PF08553 VID27: VID27 cytoplas 86.5 7.6 0.00016 51.5 13.9 101 526-656 543-646 (794)
346 KOG1008 Uncharacterized conser 85.2 0.36 7.9E-06 60.0 1.1 113 572-707 156-275 (783)
347 KOG2395 Protein involved in va 85.0 6.4 0.00014 48.6 11.3 133 555-706 361-499 (644)
348 COG0823 TolB Periplasmic compo 84.4 38 0.00082 42.4 18.2 122 575-717 242-368 (425)
349 PF00780 CNH: CNH domain; Int 83.8 58 0.0013 37.7 18.7 145 527-715 9-173 (275)
350 KOG4499 Ca2+-binding protein R 83.4 60 0.0013 36.8 16.8 92 624-728 160-262 (310)
351 PRK02888 nitrous-oxide reducta 82.3 13 0.00027 48.0 12.9 93 600-708 295-405 (635)
352 PF12894 Apc4_WD40: Anaphase-p 82.2 3.2 6.9E-05 35.1 5.2 34 669-711 11-44 (47)
353 cd00216 PQQ_DH Dehydrogenases 81.0 60 0.0013 41.4 18.7 103 599-715 173-327 (488)
354 PF11715 Nup160: Nucleoporin N 80.2 8.9 0.00019 49.5 11.1 31 101-131 229-259 (547)
355 PRK02888 nitrous-oxide reducta 80.1 18 0.00039 46.6 13.2 106 594-710 239-354 (635)
356 cd00216 PQQ_DH Dehydrogenases 79.9 38 0.00083 43.1 16.4 121 592-716 111-273 (488)
357 KOG1920 IkappaB kinase complex 78.3 40 0.00086 46.0 15.6 108 591-710 207-325 (1265)
358 PF02897 Peptidase_S9_N: Proly 78.0 77 0.0017 39.2 18.1 116 574-709 127-262 (414)
359 COG0823 TolB Periplasmic compo 77.6 4.6 9.9E-05 50.3 6.9 69 1316-1400 243-311 (425)
360 PF06433 Me-amine-dh_H: Methyl 76.9 8.4 0.00018 46.0 8.4 18 190-207 118-135 (342)
361 PF12234 Rav1p_C: RAVE protein 76.3 49 0.0011 43.1 15.6 102 591-706 41-155 (631)
362 KOG3621 WD40 repeat-containing 76.1 10 0.00022 48.5 9.2 102 527-658 47-155 (726)
363 KOG1916 Nuclear protein, conta 74.1 2 4.3E-05 55.5 2.5 134 566-721 128-284 (1283)
364 PF03178 CPSF_A: CPSF A subuni 73.5 28 0.00061 41.5 12.1 112 568-707 86-202 (321)
365 COG3391 Uncharacterized conser 72.6 69 0.0015 39.4 15.4 117 574-713 77-196 (381)
366 PF14655 RAB3GAP2_N: Rab3 GTPa 72.0 27 0.00059 43.3 11.5 86 616-717 302-408 (415)
367 COG3391 Uncharacterized conser 70.9 1.1E+02 0.0024 37.7 16.6 123 572-714 117-246 (381)
368 PF15390 DUF4613: Domain of un 70.8 1.3E+02 0.0029 38.4 16.6 120 569-707 55-186 (671)
369 KOG2395 Protein involved in va 70.1 42 0.00092 41.9 12.1 147 104-303 348-496 (644)
370 PF00930 DPPIV_N: Dipeptidyl p 69.8 9.7 0.00021 46.2 7.1 83 600-690 22-121 (353)
371 PRK13616 lipoprotein LpqB; Pro 69.7 30 0.00065 45.1 11.7 103 571-703 350-472 (591)
372 PF03088 Str_synth: Strictosid 69.5 16 0.00035 35.3 7.0 50 1336-1399 36-86 (89)
373 PF05096 Glu_cyclase_2: Glutam 69.0 1.5E+02 0.0032 34.6 15.7 120 572-718 46-168 (264)
374 PF07676 PD40: WD40-like Beta 68.1 11 0.00023 30.0 4.6 29 1370-1398 8-38 (39)
375 PRK13616 lipoprotein LpqB; Pro 67.3 96 0.0021 40.6 15.6 98 573-690 399-516 (591)
376 PF06977 SdiA-regulated: SdiA- 67.2 1E+02 0.0023 35.6 14.2 111 565-690 16-138 (248)
377 PF06433 Me-amine-dh_H: Methyl 65.9 20 0.00043 43.0 8.2 62 650-719 270-332 (342)
378 PF00780 CNH: CNH domain; Int 64.1 2.7E+02 0.0059 32.0 22.8 125 511-659 37-167 (275)
379 KOG2956 CLIP-associating prote 63.4 36 0.00077 42.1 9.7 76 1221-1298 392-468 (516)
380 TIGR03074 PQQ_membr_DH membran 63.3 2.5E+02 0.0054 38.0 18.5 61 648-716 413-486 (764)
381 PF04841 Vps16_N: Vps16, N-ter 62.3 2.5E+02 0.0055 34.9 17.5 52 669-728 216-268 (410)
382 PF05694 SBP56: 56kDa selenium 62.2 63 0.0014 40.0 11.5 98 601-708 222-343 (461)
383 PF11715 Nup160: Nucleoporin N 60.4 28 0.00061 45.0 9.1 40 671-718 216-259 (547)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 59.0 1.5E+02 0.0033 38.2 15.2 60 649-717 441-500 (527)
385 PF10168 Nup88: Nuclear pore c 58.9 1.3E+02 0.0028 40.2 14.7 71 623-708 86-180 (717)
386 PF07569 Hira: TUP1-like enhan 57.8 52 0.0011 37.3 9.5 67 639-714 22-102 (219)
387 KOG4499 Ca2+-binding protein R 57.7 1.7E+02 0.0038 33.3 12.9 50 639-688 223-273 (310)
388 TIGR03074 PQQ_membr_DH membran 57.7 1.5E+02 0.0033 40.0 15.1 125 591-716 194-353 (764)
389 PF10313 DUF2415: Uncharacteri 57.6 33 0.00071 28.6 5.6 30 671-708 2-34 (43)
390 KOG4460 Nuclear pore complex, 56.9 1.2E+02 0.0026 38.1 12.4 76 623-712 105-203 (741)
391 PF10313 DUF2415: Uncharacteri 56.6 25 0.00054 29.2 4.8 34 1371-1404 1-36 (43)
392 KOG1916 Nuclear protein, conta 56.2 7.8 0.00017 50.5 2.7 111 527-662 197-328 (1283)
393 COG3386 Gluconolactonase [Carb 55.6 1.3E+02 0.0029 35.9 12.8 112 562-689 154-275 (307)
394 PF12348 CLASP_N: CLASP N term 55.3 1.4E+02 0.003 33.5 12.6 142 1145-1306 54-204 (228)
395 COG3386 Gluconolactonase [Carb 53.7 2.4E+02 0.0051 33.8 14.5 106 605-724 145-259 (307)
396 PF02897 Peptidase_S9_N: Proly 52.2 57 0.0012 40.4 9.6 76 1314-1404 127-213 (414)
397 KOG3630 Nuclear pore complex, 51.6 80 0.0017 43.0 10.6 100 593-706 116-227 (1405)
398 PF14761 HPS3_N: Hermansky-Pud 51.3 1.5E+02 0.0033 33.4 11.4 103 592-710 29-166 (215)
399 PF03178 CPSF_A: CPSF A subuni 50.1 5.1E+02 0.011 30.8 19.8 112 509-657 88-202 (321)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 48.4 2.2E+02 0.0047 36.9 14.0 123 591-716 69-198 (527)
401 TIGR02276 beta_rpt_yvtn 40-res 48.4 50 0.0011 26.2 5.5 32 679-717 1-32 (42)
402 PF01731 Arylesterase: Arylest 48.2 69 0.0015 30.8 7.1 49 1336-1400 35-83 (86)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 47.4 1.3E+02 0.0028 37.5 11.2 95 563-666 300-407 (415)
404 COG3490 Uncharacterized protei 46.8 3.8E+02 0.0083 31.6 13.7 103 599-714 199-317 (366)
405 KOG1242 Protein containing ada 46.2 7E+02 0.015 32.3 17.3 250 984-1318 196-451 (569)
406 PF04841 Vps16_N: Vps16, N-ter 45.8 6.9E+02 0.015 31.1 19.3 57 621-683 216-273 (410)
407 PF04053 Coatomer_WDAD: Coatom 45.2 55 0.0012 41.2 7.7 80 591-680 117-207 (443)
408 PF00930 DPPIV_N: Dipeptidyl p 44.7 51 0.0011 40.0 7.3 55 648-712 22-76 (353)
409 COG5167 VID27 Protein involved 44.5 1.1E+02 0.0024 38.2 9.5 60 639-707 573-632 (776)
410 PHA02713 hypothetical protein; 44.3 93 0.002 40.4 9.9 73 639-719 464-545 (557)
411 PF14727 PHTB1_N: PTHB1 N-term 44.1 5.9E+02 0.013 31.9 16.2 158 28-248 37-204 (418)
412 PRK10115 protease 2; Provision 43.4 3.2E+02 0.007 36.5 14.9 112 573-706 129-254 (686)
413 PF05694 SBP56: 56kDa selenium 43.1 3.5E+02 0.0076 33.8 13.6 44 111-154 221-265 (461)
414 PF14870 PSII_BNR: Photosynthe 42.7 4.7E+02 0.01 31.3 14.5 104 570-689 144-252 (302)
415 TIGR03032 conserved hypothetic 42.2 1.8E+02 0.004 34.6 10.7 102 101-222 212-313 (335)
416 PF13645 YkuD_2: L,D-transpept 41.3 72 0.0016 34.8 6.8 80 1287-1381 4-84 (176)
417 PF10647 Gmad1: Lipoprotein Lp 40.4 3.5E+02 0.0076 31.3 12.9 114 572-706 25-143 (253)
418 COG3490 Uncharacterized protei 39.8 5E+02 0.011 30.6 13.3 86 591-688 80-180 (366)
419 PF14583 Pectate_lyase22: Olig 39.7 6E+02 0.013 31.4 14.9 177 517-724 37-240 (386)
420 COG3204 Uncharacterized protei 37.8 3.9E+02 0.0084 31.7 12.2 117 568-707 83-210 (316)
421 smart00036 CNH Domain found in 36.0 1.1E+02 0.0023 36.5 8.0 57 1323-1400 14-72 (302)
422 PF14583 Pectate_lyase22: Olig 35.6 2.3E+02 0.005 34.9 10.6 145 556-716 16-185 (386)
423 PF12768 Rax2: Cortical protei 35.4 2.8E+02 0.0061 32.8 11.1 97 601-708 16-124 (281)
424 TIGR02276 beta_rpt_yvtn 40-res 34.7 1.2E+02 0.0026 24.0 5.7 38 639-677 3-41 (42)
425 PF02985 HEAT: HEAT repeat; I 33.8 42 0.0009 25.4 2.6 24 1006-1029 2-25 (31)
426 PF07569 Hira: TUP1-like enhan 33.7 1.2E+02 0.0026 34.4 7.5 84 1314-1406 14-108 (219)
427 PF08728 CRT10: CRT10; InterP 33.2 2.3E+02 0.005 37.6 10.7 102 591-707 114-246 (717)
428 KOG2973 Uncharacterized conser 32.5 2.6E+02 0.0056 33.2 9.7 32 1148-1180 7-42 (353)
429 PF07676 PD40: WD40-like Beta 31.9 1.1E+02 0.0024 24.1 5.0 27 17-43 9-38 (39)
430 COG5167 VID27 Protein involved 31.0 3.6E+02 0.0078 34.0 11.0 55 231-303 574-628 (776)
431 PF14761 HPS3_N: Hermansky-Pud 30.3 1.2E+02 0.0025 34.3 6.4 62 1317-1395 22-84 (215)
432 PF10647 Gmad1: Lipoprotein Lp 29.9 9.1E+02 0.02 27.8 17.0 104 572-690 67-186 (253)
433 TIGR02604 Piru_Ver_Nterm putat 29.4 7.8E+02 0.017 30.0 14.2 110 602-719 48-184 (367)
434 PF12755 Vac14_Fab1_bd: Vacuol 29.3 1.3E+02 0.0029 29.5 6.0 51 1256-1306 5-55 (97)
435 PF12234 Rav1p_C: RAVE protein 29.3 3.4E+02 0.0073 35.7 11.2 60 639-706 41-103 (631)
436 KOG1062 Vesicle coat complex A 28.7 4.9E+02 0.011 34.7 12.2 164 1133-1306 168-378 (866)
437 PF14781 BBS2_N: Ciliary BBSom 28.1 7.3E+02 0.016 26.1 12.6 120 96-309 4-125 (136)
438 PF12717 Cnd1: non-SMC mitotic 27.8 2.8E+02 0.006 30.2 8.9 99 1122-1248 8-111 (178)
439 PF10193 Telomere_reg-2: Telom 23.9 2.4E+02 0.0053 28.5 6.9 69 1233-1301 1-76 (114)
440 KOG1059 Vesicle coat complex A 23.7 5.4E+02 0.012 34.0 11.1 172 1119-1308 161-366 (877)
441 COG4590 ABC-type uncharacteriz 23.3 3.9E+02 0.0084 33.2 9.3 161 13-250 217-388 (733)
442 PF14500 MMS19_N: Dos2-interac 23.2 2.9E+02 0.0062 32.3 8.3 143 1151-1314 6-156 (262)
443 TIGR02604 Piru_Ver_Nterm putat 23.0 6.1E+02 0.013 31.0 11.6 58 622-686 124-200 (367)
444 PF10214 Rrn6: RNA polymerase 22.5 3.1E+02 0.0068 37.2 9.7 77 622-712 146-237 (765)
445 PF08728 CRT10: CRT10; InterP 22.3 4.8E+02 0.01 34.8 10.7 120 527-657 116-246 (717)
446 PHA03098 kelch-like protein; P 22.2 6.8E+02 0.015 32.1 12.5 155 527-710 345-514 (534)
447 PF12657 TFIIIC_delta: Transcr 22.1 4E+02 0.0087 28.8 8.8 35 623-657 87-121 (173)
448 PF03022 MRJP: Major royal jel 21.9 1.4E+02 0.003 35.3 5.5 20 1337-1356 88-107 (287)
449 PRK13684 Ycf48-like protein; P 20.8 1E+03 0.023 28.6 12.9 118 570-715 172-295 (334)
450 COG3204 Uncharacterized protei 20.7 4.5E+02 0.0098 31.2 8.9 80 619-712 83-163 (316)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-36 Score=356.09 Aligned_cols=544 Identities=15% Similarity=0.143 Sum_probs=365.8
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeec-cccceeEeeeccccccccCccccccccccccccc
Q 000450 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1496)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~G-Ht~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1496)
..||+++++||++.|++++..+.+++|++.+ + +.+..+.+ |++||--++
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~t---g--k~irswKa~He~Pvi~ma------------------------- 112 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPT---G--KLIRSWKAIHEAPVITMA------------------------- 112 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEccc---c--hHhHhHhhccCCCeEEEE-------------------------
Confidence 5699999999999999999999999999985 3 34444555 999999998
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcC-CCCeEEEEcccccccCCccccccccccccc
Q 000450 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP-SNPRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1496)
Q Consensus 96 g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s-~~~~ll~~G~~~id~~~l~~~~~~~~v~~~ 174 (1496)
+.|.+..|++|+.||.++|||+..+.|....+-++ |....+.+.+ ...+++.+|..
T Consensus 113 --~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g--GvVssl~F~~~~~~~lL~sg~~------------------- 169 (775)
T KOG0319|consen 113 --FDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG--GVVSSLLFHPHWNRWLLASGAT------------------- 169 (775)
T ss_pred --EcCCCceEEeccccceEEEEEeeCCEEEEEecCCC--ceEEEEEeCCccchhheeecCC-------------------
Confidence 56677889999999999999999999999977652 4444455554 23367777765
Q ss_pred ccccccCCCCCCCCccEEEEEECCceEE-EEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcc
Q 000450 175 LVSEDKEVPMKNPPKCTLVIVDTYGLTI-VQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHL 253 (1496)
Q Consensus 175 ~~~~d~~~~~~~~~~~~I~v~D~~t~~~-l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~ 253 (1496)
++.+.+||..+.+. +.++.. +.+. |+.++|++ |+. .++.++.|..+-|||+.+-+
T Consensus 170 --------------D~~v~vwnl~~~~tcl~~~~~-H~S~--vtsL~~~~---d~~--~~ls~~RDkvi~vwd~~~~~-- 225 (775)
T KOG0319|consen 170 --------------DGTVRVWNLNDKRTCLHTMIL-HKSA--VTSLAFSE---DSL--ELLSVGRDKVIIVWDLVQYK-- 225 (775)
T ss_pred --------------CceEEEEEcccCchHHHHHHh-hhhh--eeeeeecc---CCc--eEEEeccCcEEEEeehhhhh--
Confidence 48999999886655 333333 3344 89999984 433 36666999999999995432
Q ss_pred ccccCCCcccCCCccceeeeccCcccCceEEEEecC-----CcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeCCC
Q 000450 254 DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATC-----GNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGS 328 (1496)
Q Consensus 254 ~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~d-----g~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~ 328 (1496)
....-++| +..+.+.+-++ |..+.++++.+ .++.|+... +...+ ....+
T Consensus 226 -~l~~lp~y----------------e~~E~vv~l~~~~~~~~~~~~TaG~~g-~~~~~d~es--~~~~~------~~~~~ 279 (775)
T KOG0319|consen 226 -KLKTLPLY----------------ESLESVVRLREELGGKGEYIITAGGSG-VVQYWDSES--GKCVY------KQRQS 279 (775)
T ss_pred -hhheechh----------------hheeeEEEechhcCCcceEEEEecCCc-eEEEEeccc--chhhh------hhccC
Confidence 11111222 22344454444 55777777766 566677665 11110 00011
Q ss_pred CCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEeec
Q 000450 329 TNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQM 408 (1496)
Q Consensus 329 ~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~ 408 (1496)
..+-+..+..... ...+.+-+.+....+|..... .+- ....+-.+...+..|...
T Consensus 280 ~~~e~~~~~~~~~----------------~~~~l~vtaeQnl~l~d~~~l-------~i~--k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 280 DSEEIDHLLAIES----------------MSQLLLVTAEQNLFLYDEDEL-------TIV--KQIVGYNDEILDMKFLGP 334 (775)
T ss_pred Cchhhhcceeccc----------------cCceEEEEccceEEEEEcccc-------EEe--hhhcCCchhheeeeecCC
Confidence 0111122222211 113333344444444422100 000 000011122233444433
Q ss_pred ceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccc
Q 000450 409 SLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVP 488 (1496)
Q Consensus 409 ~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~ 488 (1496)
....+.+.+ . .|.++++.+ .+..|+ +..|....+-..+. -.+| +-+++.+.+..+.
T Consensus 335 e~~~laVAT------N----s~~lr~y~~------~~~~c~-ii~GH~e~vlSL~~----~~~g---~llat~sKD~svi 390 (775)
T KOG0319|consen 335 EESHLAVAT------N----SPELRLYTL------PTSYCQ-IIPGHTEAVLSLDV----WSSG---DLLATGSKDKSVI 390 (775)
T ss_pred ccceEEEEe------C----CCceEEEec------CCCceE-EEeCchhheeeeee----cccC---cEEEEecCCceEE
Confidence 322233332 1 234665543 222344 33443221110000 0123 2477888999999
Q ss_pred cccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC---cceEEE
Q 000450 489 RSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS---HVSRQY 565 (1496)
Q Consensus 489 lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s---~~~~~~ 565 (1496)
+|++.++...-.+.....+|...|.++++. .-.+..+++++.|+++++|.+.. .. +.+. ..+..+
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~---~~~asffvsvS~D~tlK~W~l~~--s~-------~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGS---KLGASFFVSVSQDCTLKLWDLPK--SK-------ETAFPIVLTCRYT 458 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeec---ccCccEEEEecCCceEEEecCCC--cc-------cccccceehhhHH
Confidence 999966555445666678999999999862 23356899999999999955542 00 0111 011123
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 566 l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
...|...|+|++++|+ +.+++|||.|++.++|+++....+.++.+|+..|++|.|+|. .++++|+
T Consensus 459 ~~aHdKdIN~Vaia~n---------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~------dq~laT~ 523 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPN---------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN------DQLLATC 523 (775)
T ss_pred HHhhcccccceEecCC---------CceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc------cceeEec
Confidence 4579999999999997 899999999999999999999999999999999999999998 8999999
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceee
Q 000450 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~ 725 (1496)
|.|++|+||.+.++.|+.+|.||...|..+.|-.+|..|++++.| |-|++|+++++++++++.+|..++...
T Consensus 524 SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad--------GliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 524 SGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD--------GLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred cCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC--------CcEEEEeccchhhhhhhhhccceeEEE
Confidence 999999999999999999999999999999999999999999998 999999999999999999999999887
Q ss_pred eeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 726 ~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
...+. .. .+++-..|+++..|.
T Consensus 596 ~~~~~------~~-----------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 596 SVSPL------LD-----------MFVTGGGDGRIIFWK 617 (775)
T ss_pred eecCc------cc-----------eeEecCCCeEEEEee
Confidence 43311 11 122333489999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=328.93 Aligned_cols=360 Identities=19% Similarity=0.213 Sum_probs=268.5
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
.+...|-|++|+|||+.||||+.|.++++||+.+ ..|..+..||...|.|++
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-----eTp~~t~KgH~~WVlcva----------------------- 164 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-----ETPLFTCKGHKNWVLCVA----------------------- 164 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCC-----CCcceeecCCccEEEEEE-----------------------
Confidence 4556799999999999999999999999999996 578899999999999999
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcC-------CCCeEEEEcccccccCCccccc
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP-------SNPRYVCIGCCFIDTNQLSDHH 166 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s-------~~~~ll~~G~~~id~~~l~~~~ 166 (1496)
++||++.||||+.||+|++||-.+|+++-+ .++ |.-.-|..+. +..++++.+.-
T Consensus 165 ----wsPDgk~iASG~~dg~I~lwdpktg~~~g~-~l~---gH~K~It~Lawep~hl~p~~r~las~sk----------- 225 (480)
T KOG0271|consen 165 ----WSPDGKKIASGSKDGSIRLWDPKTGQQIGR-ALR---GHKKWITALAWEPLHLVPPCRRLASSSK----------- 225 (480)
T ss_pred ----ECCCcchhhccccCCeEEEecCCCCCcccc-ccc---CcccceeEEeecccccCCCccceecccC-----------
Confidence 688888899999999999999999987643 233 3223333221 55566655432
Q ss_pred ccccccccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEE
Q 000450 167 SFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVP 246 (1496)
Q Consensus 167 ~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWd 246 (1496)
++.++|||...++++.++.. +..+ |+|+.. .|. +.++.++.|++||+|+
T Consensus 226 ----------------------Dg~vrIWd~~~~~~~~~lsg-HT~~--VTCvrw-----GG~-gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 226 ----------------------DGSVRIWDTKLGTCVRTLSG-HTAS--VTCVRW-----GGE-GLIYSGSQDRTIKVWR 274 (480)
T ss_pred ----------------------CCCEEEEEccCceEEEEecc-Cccc--eEEEEE-----cCC-ceEEecCCCceEEEEE
Confidence 38999999999999998876 5444 888873 233 6677889999999999
Q ss_pred CCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeC
Q 000450 247 ISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEG 326 (1496)
Q Consensus 247 l~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~ 326 (1496)
...+.. + +.+.+|...++.++++.| +.+ .++.
T Consensus 275 a~dG~~---------------~---r~lkGHahwvN~lalsTd-----------y~L---Rtga---------------- 306 (480)
T KOG0271|consen 275 ALDGKL---------------C---RELKGHAHWVNHLALSTD-----------YVL---RTGA---------------- 306 (480)
T ss_pred ccchhH---------------H---Hhhcccchheeeeeccch-----------hhh---hccc----------------
Confidence 876521 0 112334344444442221 000 0000
Q ss_pred CCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEe
Q 000450 327 GSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFI 406 (1496)
Q Consensus 327 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~ 406 (1496)
|
T Consensus 307 -----------f-------------------------------------------------------------------- 307 (480)
T KOG0271|consen 307 -----------F-------------------------------------------------------------------- 307 (480)
T ss_pred -----------c--------------------------------------------------------------------
Confidence 0
Q ss_pred ecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCc
Q 000450 407 QMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDT 486 (1496)
Q Consensus 407 ~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~ 486 (1496)
++.+. ..+| .. ..+. +.+.+
T Consensus 308 --------------~~t~~-~~~~-~s--e~~~---------~Al~r--------------------------------- 327 (480)
T KOG0271|consen 308 --------------DHTGR-KPKS-FS--EEQK---------KALER--------------------------------- 327 (480)
T ss_pred --------------ccccc-cCCC-hH--HHHH---------HHHHH---------------------------------
Confidence 00000 0000 00 0000 00000
Q ss_pred cccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE
Q 000450 487 VPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF 566 (1496)
Q Consensus 487 i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l 566 (1496)
++ .+.- -.|.++|+|+.|+++.+ |+- .++.+++..+
T Consensus 328 ---Y~-------------------~~~~--------~~~erlVSgsDd~tlfl--W~p------------~~~kkpi~rm 363 (480)
T KOG0271|consen 328 ---YE-------------------AVLK--------DSGERLVSGSDDFTLFL--WNP------------FKSKKPITRM 363 (480)
T ss_pred ---HH-------------------Hhhc--------cCcceeEEecCCceEEE--ecc------------cccccchhhh
Confidence 00 0000 11237999999999999 551 2344678889
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
.||..-|+.+.|+|| +++++|+|.|..|++||-++|+.+.+|++|.++|++++|+.| .++++|||
T Consensus 364 tgHq~lVn~V~fSPd---------~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD------sRLlVS~S 428 (480)
T KOG0271|consen 364 TGHQALVNHVSFSPD---------GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD------SRLLVSGS 428 (480)
T ss_pred hchhhheeeEEECCC---------ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC------ccEEEEcC
Confidence 999999999999998 899999999999999999999999999999999999999999 89999999
Q ss_pred CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 647 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 647 ~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
.|.++++||+++.+....++||.+.|.++.|+|||..+++|+.| ..+++|-
T Consensus 429 kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkd--------kv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKD--------KVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCc--------eEEEeec
Confidence 99999999999999999999999999999999999999999998 9999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=334.55 Aligned_cols=543 Identities=15% Similarity=0.162 Sum_probs=365.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccCC
Q 000450 22 TSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLD 101 (1496)
Q Consensus 22 va~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d 101 (1496)
++++++|+.|+|.+.|. |..-|+.+ +.+.....-.+-...|++++ .+||
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv~t---~~~~l~s~~~ed~d~ita~~---------------------------l~~d 73 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDVAT---GSIALPSGSNEDEDEITALA---------------------------LTPD 73 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEccC---CceecccCCccchhhhheee---------------------------ecCC
Confidence 89999999999988764 55678875 33321112224456788887 6889
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccccccccC
Q 000450 102 NGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKE 181 (1496)
Q Consensus 102 ~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~~ 181 (1496)
+.+|++++..+-+++|++.+|++++..+.. |..|..+.++.+.+-+++.|..
T Consensus 74 ~~~L~~a~rs~llrv~~L~tgk~irswKa~--He~Pvi~ma~~~~g~LlAtgga-------------------------- 125 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTGKLIRSWKAI--HEAPVITMAFDPTGTLLATGGA-------------------------- 125 (775)
T ss_pred ccEEEEeeccceEEEEEcccchHhHhHhhc--cCCCeEEEEEcCCCceEEeccc--------------------------
Confidence 999999999999999999999999887652 2678899999999988888875
Q ss_pred CCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccccCCCc
Q 000450 182 VPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGL 261 (1496)
Q Consensus 182 ~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~~~~l 261 (1496)
++.+.|||...+.+...+.. +++.|..+.|.| +-+..-++.+..|+++++|++.....
T Consensus 126 -------D~~v~VWdi~~~~~th~fkG---~gGvVssl~F~~---~~~~~lL~sg~~D~~v~vwnl~~~~t--------- 183 (775)
T KOG0319|consen 126 -------DGRVKVWDIKNGYCTHSFKG---HGGVVSSLLFHP---HWNRWLLASGATDGTVRVWNLNDKRT--------- 183 (775)
T ss_pred -------cceEEEEEeeCCEEEEEecC---CCceEEEEEeCC---ccchhheeecCCCceEEEEEcccCch---------
Confidence 38999999999988888876 466799999884 43323345559999999999986520
Q ss_pred ccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc--ccceeeeecceeEeeCCCCCceeeeeEEe
Q 000450 262 CKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS--TIGEICFVDNLFCLEGGSTNSYVIGAMFL 339 (1496)
Q Consensus 262 ~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~--~ige~~~~~~~l~~~~~~~~~~~v~g~~~ 339 (1496)
.+ +....|...+..+++++|+..+++++.+..++ +||... .++.....+.+=.....+.+...-+.+++
T Consensus 184 -----cl---~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~-vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 184 -----CL---HTMILHKSAVTSLAFSEDSLELLSVGRDKVII-VWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred -----HH---HHHHhhhhheeeeeeccCCceEEEeccCcEEE-EeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 01 22344777889999999999999998887532 466543 11111000000000000000000022333
Q ss_pred echhhhhhcccccccccccceEEEEcCCCcEEEEEEecCC-CCCcccCeeeecCcCCCCCceeeEEEeecceeeeeeeee
Q 000450 340 ERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMN-EKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETV 418 (1496)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~-~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~ 418 (1496)
..+ -.+.+.+|+..+...+|+..-.. +.+. ....++. ..++.+.-...+-+++-
T Consensus 255 TaG--------------~~g~~~~~d~es~~~~~~~~~~~~~e~~--~~~~~~~-----~~~~l~vtaeQnl~l~d---- 309 (775)
T KOG0319|consen 255 TAG--------------GSGVVQYWDSESGKCVYKQRQSDSEEID--HLLAIES-----MSQLLLVTAEQNLFLYD---- 309 (775)
T ss_pred Eec--------------CCceEEEEecccchhhhhhccCCchhhh--cceeccc-----cCceEEEEccceEEEEE----
Confidence 222 13466677776666655432111 1000 0001111 11111111111111210
Q ss_pred eccccccccccCeEEEEE-ccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCC
Q 000450 419 CFHVEETSQWRPYISVWS-LSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQ 497 (1496)
Q Consensus 419 ~~~~~~~~~~~p~v~vws-l~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~ 497 (1496)
.++ .++-. +-+.+ .+-..+++++.. +. .++..+....+++++......
T Consensus 310 ---~~~-------l~i~k~ivG~n-dEI~Dm~~lG~e----------------~~----~laVATNs~~lr~y~~~~~~c 358 (775)
T KOG0319|consen 310 ---EDE-------LTIVKQIVGYN-DEILDMKFLGPE----------------ES----HLAVATNSPELRLYTLPTSYC 358 (775)
T ss_pred ---ccc-------cEEehhhcCCc-hhheeeeecCCc----------------cc----eEEEEeCCCceEEEecCCCce
Confidence 111 11110 00100 000011222211 11 466667777888886544322
Q ss_pred CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEE
Q 000450 498 AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1496)
Q Consensus 498 ~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La 577 (1496)
+.+.+|...|.++...+.+- .+++|+.|.++++|+++. +.....++....||++.|.+++
T Consensus 359 -----~ii~GH~e~vlSL~~~~~g~----llat~sKD~svilWr~~~-----------~~~~~~~~a~~~gH~~svgava 418 (775)
T KOG0319|consen 359 -----QIIPGHTEAVLSLDVWSSGD----LLATGSKDKSVILWRLNN-----------NCSKSLCVAQANGHTNSVGAVA 418 (775)
T ss_pred -----EEEeCchhheeeeeecccCc----EEEEecCCceEEEEEecC-----------Ccchhhhhhhhcccccccceee
Confidence 35789999999988555553 899999999999977641 1222345666789999999999
Q ss_pred EecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---------eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---------~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
++.. ...+|+|+|.|+++++|++...+ +..+...|...|++|+++|+ ..++|+||.|
T Consensus 419 ~~~~--------~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n------dkLiAT~SqD 484 (775)
T KOG0319|consen 419 GSKL--------GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN------DKLIATGSQD 484 (775)
T ss_pred eccc--------CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC------CceEEecccc
Confidence 9654 26799999999999999997521 11245679999999999999 8999999999
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
++.+||+++.++.+.++.||...|++|.|+|.++.|+|++.| ++|+||.+.++.+++++.||++.+..+.|.
T Consensus 485 ktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD--------~TvKIW~is~fSClkT~eGH~~aVlra~F~ 556 (775)
T KOG0319|consen 485 KTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD--------KTVKIWSISTFSCLKTFEGHTSAVLRASFI 556 (775)
T ss_pred cceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCC--------ceEEEEEeccceeeeeecCccceeEeeeee
Confidence 999999999999999999999999999999999999999998 999999999999999999999999998887
Q ss_pred cccccccccceEEcCCccccccceeeccCCcEEeecccccc
Q 000450 729 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 729 ~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
+ +|.. +++..+||-+|+|++++.+
T Consensus 557 ~------------~~~q-----liS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 557 R------------NGKQ-----LISAGADGLIKLWNIKTNE 580 (775)
T ss_pred e------------CCcE-----EEeccCCCcEEEEeccchh
Confidence 3 2333 3455569999999986544
No 4
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=310.20 Aligned_cols=580 Identities=16% Similarity=0.115 Sum_probs=374.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccc
Q 000450 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1496)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g 96 (1496)
..|||+..+||...||.|.+||.|++|++.. . .+..++.||.++|+++.
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s---~--~~~~tfngHK~AVt~l~-------------------------- 114 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLES---E--EILITFNGHKAAVTTLK-------------------------- 114 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCC---C--ceeeeecccccceEEEE--------------------------
Confidence 4799999999999999999999999999983 2 46678899999999998
Q ss_pred cccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccccc
Q 000450 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1496)
Q Consensus 97 ~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~ 176 (1496)
+...|.+|+|||.|+.|.|||+..-.-+.+...| -.+-+...+..++..+++++.+
T Consensus 115 -fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GH--kd~iT~~~F~~~~~~lvS~sKD--------------------- 170 (888)
T KOG0306|consen 115 -FDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGH--KDSITQALFLNGDSFLVSVSKD--------------------- 170 (888)
T ss_pred -EcccCceEeecCCCccEEEEEeccceeeEEeecc--hHHHhHHhccCCCeEEEEeccC---------------------
Confidence 5677899999999999999999754444332221 1223334455567888888877
Q ss_pred ccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccc
Q 000450 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDRE 256 (1496)
Q Consensus 177 ~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~ 256 (1496)
..|.+||..+..+..+....+ +-+..+++.+ ..+++++.|+.++||++.-.. .+
T Consensus 171 -------------s~iK~WdL~tqhCf~Thvd~r---~Eiw~l~~~~-------~~lvt~~~dse~~v~~L~~~~---D~ 224 (888)
T KOG0306|consen 171 -------------SMIKFWDLETQHCFETHVDHR---GEIWALVLDE-------KLLVTAGTDSELKVWELAFED---DE 224 (888)
T ss_pred -------------ceEEEEecccceeeeEEeccc---ceEEEEEEec-------ceEEEEecCCceEEEEeeccc---cc
Confidence 789999999999988876523 2367777662 125555999999999995431 11
Q ss_pred cCCCcccCCCccceeeeccCcccCceEEEEecC--CcEEEEEeCCeE--EEEEcCCCcccceeee----ecceeEeeCCC
Q 000450 257 EGNGLCKSSSQLDMAILQNGVVEGGHLVSVATC--GNIIALVLKDHC--IFRLLGSGSTIGEICF----VDNLFCLEGGS 328 (1496)
Q Consensus 257 ~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~d--g~~l~t~~~~~~--~~~l~d~~~~ige~~~----~~~~l~~~~~~ 328 (1496)
.....+..-++.+.+.. + +.++.+.+..+ ++.++..+.+.. .+++.......+.... .......+...
T Consensus 225 ~~~~~~~s~~~~G~~~r-q---sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 225 KETNRYISTKLRGTFIR-Q---SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccceeeccceeee-c---cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 11111111111111111 1 22334444444 677776665543 1222222210000000 00000000000
Q ss_pred ---CCc-----eeeeeEEeechhhhhhccccc-ccccccceEEEEcCCCcEEEEEEecCCCCCcc-cCeeeecCcCCCCC
Q 000450 329 ---TNS-----YVIGAMFLERVVAEKIENTMG-VCTTFYENFAVWDNRGSAIVYAISYMNEKFDY-EPHFEIPAVSYPSG 398 (1496)
Q Consensus 329 ---~~~-----~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~-~~~~~ip~~~~~~~ 398 (1496)
... .-+..+.... .+.+-.- +..... ...+--.+..++.|.++........ ...-.+ ...+.+.
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~----kiks~dv~~~~~~~-~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~ 374 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSA----KIKSFDVTPSGGTE-NTLVLLANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRS 374 (888)
T ss_pred cchhhhHHHHHHHHHheechh----heeEEEEEecCCcc-eeEEEeecCceEEEEeccCCCCCcccccccee-eeccchh
Confidence 000 0000000000 0000000 011111 2223355666778888763322110 111111 2234566
Q ss_pred ceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCccccee
Q 000450 399 VKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478 (1496)
Q Consensus 399 ~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l 478 (1496)
+...+.|+.++..+.+.. . + .+.+|.... .+-.+.+.++.....-++|. |. .+
T Consensus 375 dVRsl~vS~d~~~~~Sga-----~-~------SikiWn~~t-----~kciRTi~~~y~l~~~Fvpg------d~----~I 427 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGA-----G-E------SIKIWNRDT-----LKCIRTITCGYILASKFVPG------DR----YI 427 (888)
T ss_pred heeEEEeecCceeeeecC-----C-C------cEEEEEccC-----cceeEEeccccEEEEEecCC------Cc----eE
Confidence 667777777777776643 1 2 388896311 11124555553222223322 11 35
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
.....+|-+.++|+... .+..++..|.+.++++...+++. .+++|+.|.+|++|.+...... ++..-..-
T Consensus 428 v~G~k~Gel~vfdlaS~----~l~Eti~AHdgaIWsi~~~pD~~----g~vT~saDktVkfWdf~l~~~~--~gt~~k~l 497 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASA----SLVETIRAHDGAIWSISLSPDNK----GFVTGSADKTVKFWDFKLVVSV--PGTQKKVL 497 (888)
T ss_pred EEeccCCceEEEEeehh----hhhhhhhccccceeeeeecCCCC----ceEEecCCcEEEEEeEEEEecc--Ccccceee
Confidence 56667788888887653 55667789999999999888888 9999999999999766543321 11000000
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
+-+..+++ .-...|.|+.++|| +.+|+.+=-|.||++|-+.+.+..-.+.+|.-||.++.++||
T Consensus 498 sl~~~rtL-el~ddvL~v~~Spd---------gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D------ 561 (888)
T KOG0306|consen 498 SLKHTRTL-ELEDDVLCVSVSPD---------GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD------ 561 (888)
T ss_pred eeccceEE-eccccEEEEEEcCC---------CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC------
Confidence 00111222 23567999999998 899999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
+..++|||.|++|++|-++-|.|.++|-+|.+.|.+|.|-|...++.+++.| +.|+-||-+..+.++++.||
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD--------~kvKqWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD--------GKVKQWDGEKFEEIQKLDGH 633 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCc--------ceEEeechhhhhhheeeccc
Confidence 8999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 719 ~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
...+.+.... .+|+.++ +.+.|.++|.|.-
T Consensus 634 ~~ev~cLav~------------~~G~~vv-----s~shD~sIRlwE~ 663 (888)
T KOG0306|consen 634 HSEVWCLAVS------------PNGSFVV-----SSSHDKSIRLWER 663 (888)
T ss_pred hheeeeeEEc------------CCCCeEE-----eccCCceeEeeec
Confidence 9988776332 1255544 4445999999973
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-31 Score=295.08 Aligned_cols=214 Identities=24% Similarity=0.214 Sum_probs=178.0
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
.+...+.+|+..|+|+.+-.+. .+.+|+.|++|++| + ...|++.+.|+||...|+.|+.+
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~g-----liySgS~DrtIkvw--~-------------a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEG-----LIYSGSQDRTIKVW--R-------------ALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred eEEEEeccCccceEEEEEcCCc-----eEEecCCCceEEEE--E-------------ccchhHHHhhcccchheeeeecc
Confidence 3444567899999998854444 79999999999993 3 34578889999999999999988
Q ss_pred cCCCCcc------cCc---------------------CCCEEEEEeCCCcEEEEECCC-CceEEEEcccCCCEEEEEECC
Q 000450 580 RMVGTAK------GWS---------------------FNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 580 pd~~~~~------~~~---------------------~~~~L~SGs~DgtV~lWDl~t-g~~l~~~~~H~~~V~~l~~sP 631 (1496)
.|..... +++ .++.|+||++|+++.+|+-.. .+++..+.+|..-|+.+.|+|
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 4431000 111 246799999999999999764 458899999999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
| +.+++|+|-|++|++||.++|+.+.+|+||-+.|+.|+|+.|.++|++|+.| .+++|||+++.++
T Consensus 378 d------~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD--------sTLKvw~V~tkKl 443 (480)
T KOG0271|consen 378 D------GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD--------STLKVWDVRTKKL 443 (480)
T ss_pred C------ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC--------ceEEEEEeeeeee
Confidence 9 9999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 712 ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 712 ~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
...+.||..+++.+.+.++ |..+.++.- |..+|+|.
T Consensus 444 ~~DLpGh~DEVf~vDwspD------------G~rV~sggk-----dkv~~lw~ 479 (480)
T KOG0271|consen 444 KQDLPGHADEVFAVDWSPD------------GQRVASGGK-----DKVLRLWR 479 (480)
T ss_pred cccCCCCCceEEEEEecCC------------CceeecCCC-----ceEEEeec
Confidence 9999999999988877631 444444443 77788874
No 6
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.7e-28 Score=288.12 Aligned_cols=506 Identities=16% Similarity=0.189 Sum_probs=323.2
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccc
Q 000450 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1496)
Q Consensus 15 psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1496)
+...||++.|..+|..||+||.|+.|++||+-. ..-+..|.||...||..-
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~-----E~Gl~rL~GHkd~iT~~~------------------------ 156 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG-----EEGLFRLRGHKDSITQAL------------------------ 156 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEecc-----ceeeEEeecchHHHhHHh------------------------
Confidence 555699999999999999999999999999972 234567899999999886
Q ss_pred cccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCC-CeEEEEccc-ccccCCcccc--c----
Q 000450 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSN-PRYVCIGCC-FIDTNQLSDH--H---- 166 (1496)
Q Consensus 95 ~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~-~~ll~~G~~-~id~~~l~~~--~---- 166 (1496)
|..+..+|+|.|.|+.|++||+.+.+|..+.-.+ ...+-.+.-+ .++++.|.. -+..|.+... .
T Consensus 157 ---F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~-----r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~ 228 (888)
T KOG0306|consen 157 ---FLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDH-----RGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETN 228 (888)
T ss_pred ---ccCCCeEEEEeccCceEEEEecccceeeeEEecc-----cceEEEEEEecceEEEEecCCceEEEEeeccccccccc
Confidence 4445788999999999999999999999874322 2333333322 344444331 1111111000 0
Q ss_pred cccccccccccc----ccCCCCCCCCccEEEEEECCceEE--EEEEec--------------------------------
Q 000450 167 SFESVEGDLVSE----DKEVPMKNPPKCTLVIVDTYGLTI--VQTVFH-------------------------------- 208 (1496)
Q Consensus 167 ~~~~v~~~~~~~----d~~~~~~~~~~~~I~v~D~~t~~~--l~~l~~-------------------------------- 208 (1496)
..-+........ +++.....+.+.++++.. .+.++ ++.+++
T Consensus 229 ~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~-g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl 307 (888)
T KOG0306|consen 229 RYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQ-GADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL 307 (888)
T ss_pred ccceeeccceeeeccCCceeEEeecCcccEEEEe-cchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence 000000000000 000000111111111110 00000 000000
Q ss_pred --------CccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccccCCCcccCCCccceeeeccCcccC
Q 000450 209 --------GNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEG 280 (1496)
Q Consensus 209 --------~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~ 280 (1496)
.-.....|..+++.|++ +....++.-+++.+.++.++... .....+. .+.. ....+|-.+
T Consensus 308 ~~~i~r~~~ir~~~kiks~dv~~~~---~~~~~lv~l~nNtv~~ysl~~s~---~~~p~~~-----~~~~-i~~~GHR~d 375 (888)
T KOG0306|consen 308 SDEIKRLETIRTSAKIKSFDVTPSG---GTENTLVLLANNTVEWYSLENSG---KTSPEAD-----RTSN-IEIGGHRSD 375 (888)
T ss_pred HHHHHHHHheechhheeEEEEEecC---CcceeEEEeecCceEEEEeccCC---CCCcccc-----ccce-eeeccchhh
Confidence 00012446778888543 22335555789999999998731 1111111 1111 123458889
Q ss_pred ceEEEEecCCcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeCCCCCceeeeeEEeechhhhhhcccccccccccce
Q 000450 281 GHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYEN 360 (1496)
Q Consensus 281 ~~~va~s~dg~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1496)
++.+++|.+...+++++++...+|..++...+..+ .++ +..+..|... +..
T Consensus 376 VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi------------~~~-y~l~~~Fvpg----------------d~~ 426 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI------------TCG-YILASKFVPG----------------DRY 426 (888)
T ss_pred eeEEEeecCceeeeecCCCcEEEEEccCcceeEEe------------ccc-cEEEEEecCC----------------Cce
Confidence 99999999999999999999888766655533322 111 4556666644 247
Q ss_pred EEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEcccc
Q 000450 361 FAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQK 440 (1496)
Q Consensus 361 ~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~ 440 (1496)
++++..+|...+|.+...... . .|++ ..+.-..+.-.+++...+.... +.++++|+...-
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l~-E-----ti~A---HdgaIWsi~~~pD~~g~vT~sa-----------DktVkfWdf~l~ 486 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASLV-E-----TIRA---HDGAIWSISLSPDNKGFVTGSA-----------DKTVKFWDFKLV 486 (888)
T ss_pred EEEeccCCceEEEEeehhhhh-h-----hhhc---cccceeeeeecCCCCceEEecC-----------CcEEEEEeEEEE
Confidence 889999999999988533211 0 1110 0111112222333333333221 233555542111
Q ss_pred CCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeecc
Q 000450 441 HSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISE 520 (1496)
Q Consensus 441 ~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~ 520 (1496)
.+..+.+.|. +++-. .....-+..|.|+.+.++
T Consensus 487 ~~~~gt~~k~------------------------------------lsl~~-----------~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 487 VSVPGTQKKV------------------------------------LSLKH-----------TRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eccCccccee------------------------------------eeecc-----------ceEEeccccEEEEEEcCC
Confidence 1000000000 00000 001122467888885555
Q ss_pred ccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC
Q 000450 521 SFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1496)
Q Consensus 521 ~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D 600 (1496)
.. +++.|--|.+++|+..| +.+..-.|+||.-+|.|+..+|| +.+++|||.|
T Consensus 520 gk----~LaVsLLdnTVkVyflD---------------tlKFflsLYGHkLPV~smDIS~D---------SklivTgSAD 571 (888)
T KOG0306|consen 520 GK----LLAVSLLDNTVKVYFLD---------------TLKFFLSLYGHKLPVLSMDISPD---------SKLIVTGSAD 571 (888)
T ss_pred Cc----EEEEEeccCeEEEEEec---------------ceeeeeeecccccceeEEeccCC---------cCeEEeccCC
Confidence 55 89999999999997766 34667789999999999999998 8999999999
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd 680 (1496)
.+|++|-+.-|.|...|.+|...|.+|.|-|+ .+.|.++|.|+.|+-||-+..++++.+.+|...|++++.+|+
T Consensus 572 KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~------~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 572 KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK------THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred CceEEeccccchhhhhhhcccCceeEEEEccc------ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence 99999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 681 RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 681 g~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
|+|+++++.| .+|++|....
T Consensus 646 G~~vvs~shD--------~sIRlwE~td 665 (888)
T KOG0306|consen 646 GSFVVSSSHD--------KSIRLWERTD 665 (888)
T ss_pred CCeEEeccCC--------ceeEeeeccC
Confidence 9999999999 9999998754
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.6e-25 Score=262.21 Aligned_cols=424 Identities=17% Similarity=0.175 Sum_probs=279.7
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccccc
Q 000450 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1496)
Q Consensus 16 sh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1496)
-..|+++.+|.|.++|++|+.|-+++||+++. .+.-....+.||+.+|.+.-
T Consensus 145 fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~---~k~~~~~~l~gHkd~Vvacf------------------------- 196 (893)
T KOG0291|consen 145 FDDITSIDWSDDSRLLVTGSRDLSARLFGVDG---NKNLFTYALNGHKDYVVACF------------------------- 196 (893)
T ss_pred ccceeEEEeccCCceEEeccccceEEEEEecc---ccccceEeccCCCcceEEEE-------------------------
Confidence 34699999999999999999999999999984 22222456789999997775
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCC--eEEE--------------------------e-ecCCCC--CCCCcEEEEcC
Q 000450 96 GKSSLDNGALISACTDGVLCVWSRSSG--HCRR--------------------------R-RKLPPW--VGSPSVICTLP 144 (1496)
Q Consensus 96 g~~s~d~~~LaSas~DG~l~VWdv~~G--~ci~--------------------------~-~~l~~~--~g~~~~i~~~s 144 (1496)
|..|+.-++|.|.||.+++|..+.. .... . .+-++. .++.....+|+
T Consensus 197 --F~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH 274 (893)
T KOG0291|consen 197 --FGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH 274 (893)
T ss_pred --eccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeecc
Confidence 5667777999999999999987711 0000 0 000000 00112223444
Q ss_pred CCCeEEEEcccccccCCcccccccccccccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeec
Q 000450 145 SNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSL 224 (1496)
Q Consensus 145 ~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~ 224 (1496)
+...++++|.. ++...+++..+..++..+.-+. -+|..+.|...
T Consensus 275 ~~t~~lvvgFs---------------------------------sG~f~LyelP~f~lih~LSis~---~~I~t~~~N~t 318 (893)
T KOG0291|consen 275 KGTNLLVVGFS---------------------------------SGEFGLYELPDFNLIHSLSISD---QKILTVSFNST 318 (893)
T ss_pred CCceEEEEEec---------------------------------CCeeEEEecCCceEEEEeeccc---ceeeEEEeccc
Confidence 45555555543 3566677777777777665422 23777777643
Q ss_pred cCCCCceeEEEE-eCCCcEEEEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEE
Q 000450 225 GEDMGKHYGLMV-DSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIF 303 (1496)
Q Consensus 225 ~~d~~~~~llva-s~dG~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~ 303 (1496)
+ +.+.+| +.-|.+.||+...+. -+..+++|.....+++++|||+.+++++.++ .+
T Consensus 319 G-----DWiA~g~~klgQLlVweWqsEs------------------YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-KV 374 (893)
T KOG0291|consen 319 G-----DWIAFGCSKLGQLLVWEWQSES------------------YVLKQQGHSDRITSLAYSPDGQLIATGAEDG-KV 374 (893)
T ss_pred C-----CEEEEcCCccceEEEEEeeccc------------------eeeeccccccceeeEEECCCCcEEEeccCCC-cE
Confidence 3 678888 666999999987652 1245677899999999999999999988876 45
Q ss_pred EEcCCCcccceeeeecceeEeeCCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCc
Q 000450 304 RLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFD 383 (1496)
Q Consensus 304 ~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~ 383 (1496)
++||..+ -+|... |.+. ..
T Consensus 375 KvWn~~S----------gfC~vT-----------FteH-------------------------------------ts--- 393 (893)
T KOG0291|consen 375 KVWNTQS----------GFCFVT-----------FTEH-------------------------------------TS--- 393 (893)
T ss_pred EEEeccC----------ceEEEE-----------eccC-------------------------------------CC---
Confidence 6676654 122211 1000 00
Q ss_pred ccCeeeecCcCCCCCceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccc
Q 000450 384 YEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNN 463 (1496)
Q Consensus 384 ~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~ 463 (1496)
. .--+.|...++.+++
T Consensus 394 --------~-------Vt~v~f~~~g~~lls------------------------------------------------- 409 (893)
T KOG0291|consen 394 --------G-------VTAVQFTARGNVLLS------------------------------------------------- 409 (893)
T ss_pred --------c-------eEEEEEEecCCEEEE-------------------------------------------------
Confidence 0 001112222222222
Q ss_pred cccccCCCCcccceeecccccCccccccccCCCCCCCcccccccCC-ccEEEEEeeccccccCCEEEEEEcCCcEEEEEe
Q 000450 464 STFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKE-KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQF 542 (1496)
Q Consensus 464 ~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~-~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~ 542 (1496)
++-+|+++.||+.+- +...+|.... ..-.|+++-+.+ .+++++.-....|..
T Consensus 410 -----------------sSLDGtVRAwDlkRY----rNfRTft~P~p~QfscvavD~sG-----elV~AG~~d~F~Ifv- 462 (893)
T KOG0291|consen 410 -----------------SSLDGTVRAWDLKRY----RNFRTFTSPEPIQFSCVAVDPSG-----ELVCAGAQDSFEIFV- 462 (893)
T ss_pred -----------------eecCCeEEeeeeccc----ceeeeecCCCceeeeEEEEcCCC-----CEEEeeccceEEEEE-
Confidence 122334455554331 1222222211 123344433323 344444333333322
Q ss_pred cccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCC
Q 000450 543 DLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622 (1496)
Q Consensus 543 ~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~ 622 (1496)
|+.++|+.+-.+.||.++|.+|+|+|+ +..|+|||.|.||++||+........--.+..
T Consensus 463 ------------WS~qTGqllDiLsGHEgPVs~l~f~~~---------~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s 521 (893)
T KOG0291|consen 463 ------------WSVQTGQLLDILSGHEGPVSGLSFSPD---------GSLLASGSWDKTVRIWDIFSSSGTVETLEIRS 521 (893)
T ss_pred ------------EEeecCeeeehhcCCCCcceeeEEccc---------cCeEEeccccceEEEEEeeccCceeeeEeecc
Confidence 446788999999999999999999998 89999999999999999976543333334567
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC--------------------CCCCcEEEEEcCCCC
Q 000450 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--------------------HPNYPAKVVWDCPRG 682 (1496)
Q Consensus 623 ~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g--------------------H~~~V~~V~~spdg~ 682 (1496)
.|..+.|.|+ |+-+|.+..||.|.+||.+.+..+..+.| .....+.+++++||.
T Consensus 522 dvl~vsfrPd------G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~ 595 (893)
T KOG0291|consen 522 DVLAVSFRPD------GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK 595 (893)
T ss_pred ceeEEEEcCC------CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence 7999999999 99999999999999999987654433321 123678999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++++|+.. ..|++||+.++-+++.+.
T Consensus 596 ~IlAgG~s--------n~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 596 CILAGGES--------NSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred EEEecCCc--------ccEEEEECchhheeeeEE
Confidence 99999988 899999999999888775
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=270.93 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=131.3
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++|+.|..-+| ||..++.++-.|.||...|..++|+|+ |..|+|||.|++++||
T Consensus 317 L~~tGGlD~~~Rv---------------WDlRtgr~im~L~gH~k~I~~V~fsPN---------Gy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 317 LAATGGLDSLGRV---------------WDLRTGRCIMFLAGHIKEILSVAFSPN---------GYHLATGSSDNTCKVW 372 (459)
T ss_pred eeeccCccchhhe---------------eecccCcEEEEecccccceeeEeECCC---------ceEEeecCCCCcEEEe
Confidence 4566666666666 556778899999999999999999998 8999999999999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~t 686 (1496)
|++..+.+.++.+|..-|+.|.|+|.. |.+|+|+|.|++++||.-+++.+++++.||.+.|.++..+||+.++++
T Consensus 373 DLR~r~~ly~ipAH~nlVS~Vk~~p~~-----g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHSNLVSQVKYSPQE-----GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT 447 (459)
T ss_pred eecccccceecccccchhhheEecccC-----CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEE
Confidence 999999999999999999999999964 889999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEE
Q 000450 687 LCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 687 gs~D~sg~~D~dg~V~VWD 705 (1496)
++.| .++++|.
T Consensus 448 ~s~D--------RT~KLW~ 458 (459)
T KOG0272|consen 448 SSFD--------RTIKLWR 458 (459)
T ss_pred eccC--------ceeeecc
Confidence 9999 9999995
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.3e-23 Score=250.61 Aligned_cols=524 Identities=15% Similarity=0.130 Sum_probs=313.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccC
Q 000450 21 ATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSL 100 (1496)
Q Consensus 21 ava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~ 100 (1496)
-+.|++||..+++-. .+.|-++|+.. + +....-..+..-|++++ .||
T Consensus 19 nl~ft~dG~sviSPv-GNrvsv~dLkn--N---~S~Tl~~e~~~NI~~ia---------------------------lSp 65 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPV-GNRVSVFDLKN--N---KSYTLPLETRYNITRIA---------------------------LSP 65 (893)
T ss_pred cEEECCCCCEEEecc-CCEEEEEEccC--C---cceeEEeecCCceEEEE---------------------------eCC
Confidence 578999998888643 35789999983 2 23334457888899998 789
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccccccccc
Q 000450 101 DNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDK 180 (1496)
Q Consensus 101 d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~ 180 (1496)
++.+|++..+.|...+-+......++..++. .+....-++|+|+++++|+-
T Consensus 66 ~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk----~~v~~i~fSPng~~fav~~g------------------------- 116 (893)
T KOG0291|consen 66 DGTLLLAVDERGRALLVSLLSRSVLHRFNFK----RGVGAIKFSPNGKFFAVGCG------------------------- 116 (893)
T ss_pred CceEEEEEcCCCcEEEEecccceeeEEEeec----CccceEEECCCCcEEEEEec-------------------------
Confidence 9999999999999988888776666655443 23445578899999988875
Q ss_pred CCCCCCCCccEEEEEECCceE-------EEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcc
Q 000450 181 EVPMKNPPKCTLVIVDTYGLT-------IVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHL 253 (1496)
Q Consensus 181 ~~~~~~~~~~~I~v~D~~t~~-------~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~ 253 (1496)
.-+.||...... .+...+-|+ -+-|..++++. |. ..+++|+.|-.++||.++..++
T Consensus 117 ---------n~lqiw~~P~~~~~~~~pFvl~r~~~g~--fddi~si~Ws~---DS--r~l~~gsrD~s~rl~~v~~~k~- 179 (893)
T KOG0291|consen 117 ---------NLLQIWHAPGEIKNEFNPFVLHRTYLGH--FDDITSIDWSD---DS--RLLVTGSRDLSARLFGVDGNKN- 179 (893)
T ss_pred ---------ceeEEEecCcchhcccCcceEeeeecCC--ccceeEEEecc---CC--ceEEeccccceEEEEEeccccc-
Confidence 344555443211 122222222 34488888884 33 3456669999999999987631
Q ss_pred ccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEE-EEEcCCCcccceeeeecceeEeeCCCCCce
Q 000450 254 DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCI-FRLLGSGSTIGEICFVDNLFCLEGGSTNSY 332 (1496)
Q Consensus 254 ~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~-~~l~d~~~~ige~~~~~~~l~~~~~~~~~~ 332 (1496)
-.. ...++|...+..--|..+...+.+++.++.+ +|-++..- . ..-..+....+
T Consensus 180 --~~~-------------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P--~------~~~~~~kd~eg-- 234 (893)
T KOG0291|consen 180 --LFT-------------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRP--P------ELDKAEKDEEG-- 234 (893)
T ss_pred --cce-------------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCC--c------ccccccccccc--
Confidence 001 1233455555555567777778888888753 32222110 0 00000000000
Q ss_pred eeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeE-EEeeccee
Q 000450 333 VIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSI-HFIQMSLY 411 (1496)
Q Consensus 333 ~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~-~f~~~~~~ 411 (1496)
.++.......+. ..++ .+|..-.+- +.++....++ .+.+....++.+ .|...-..
T Consensus 235 --------~~d~~~~~~~Ee----k~~~-~~~~k~~k~------~ln~~~~kvt-----aa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 235 --------SDDEEMDEDGEE----KTHK-IFWYKTKKH------YLNQNSSKVT-----AAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred --------cccccccccchh----hhcc-eEEEEEEee------eeccccccee-----eeeccCCceEEEEEecCCeeE
Confidence 000000000000 0000 011110000 0000000000 000111111111 11111111
Q ss_pred eeeeeeeeccccccccccCeEE-EEEccccCCCCCcc-eeEeccCCceeeeccccccccCCCCcccceeecccccCcccc
Q 000450 412 LLRMETVCFHVEETSQWRPYIS-VWSLSQKHSGPGKQ-CRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPR 489 (1496)
Q Consensus 412 l~~v~s~~~~~~~~~~~~p~v~-vwsl~~~~~~~~~~-~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~l 489 (1496)
|+-+. ... +..+.... ...+ .-+-.+| +|. -.-+..-+.+-+
T Consensus 291 LyelP--------------~f~lih~LSis~--~~I~t~~~N~tG----DWi----------------A~g~~klgQLlV 334 (893)
T KOG0291|consen 291 LYELP--------------DFNLIHSLSISD--QKILTVSFNSTG----DWI----------------AFGCSKLGQLLV 334 (893)
T ss_pred EEecC--------------CceEEEEeeccc--ceeeEEEecccC----CEE----------------EEcCCccceEEE
Confidence 11111 010 00000000 0000 0000112 121 011122344556
Q ss_pred ccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecC
Q 000450 490 SEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGH 569 (1496)
Q Consensus 490 Wd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH 569 (1496)
|+...... +..-++|...+++++|.++.. ++++|++||.|+| |+..++.|..++..|
T Consensus 335 weWqsEsY----VlKQQgH~~~i~~l~YSpDgq----~iaTG~eDgKVKv---------------Wn~~SgfC~vTFteH 391 (893)
T KOG0291|consen 335 WEWQSESY----VLKQQGHSDRITSLAYSPDGQ----LIATGAEDGKVKV---------------WNTQSGFCFVTFTEH 391 (893)
T ss_pred EEeeccce----eeeccccccceeeEEECCCCc----EEEeccCCCcEEE---------------EeccCceEEEEeccC
Confidence 66554322 233478999999999655555 9999999999999 346678899999999
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccC-CCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
+..|+.+.|+.. ++.++|.|.||+|+.||+......++|.... -...+|+..|. |..++.|+.|
T Consensus 392 ts~Vt~v~f~~~---------g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s------GelV~AG~~d 456 (893)
T KOG0291|consen 392 TSGVTAVQFTAR---------GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS------GELVCAGAQD 456 (893)
T ss_pred CCceEEEEEEec---------CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC------CCEEEeeccc
Confidence 999999999986 8999999999999999999999999997643 23568888887 8999999988
Q ss_pred C-cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeee
Q 000450 649 F-SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 727 (1496)
Q Consensus 649 g-sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~ 727 (1496)
. .|.+|++++|+.+-.+.||.++|.+++|+|++..|++++.| .+|++||+-......+--.+.+.++.+.|
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--------kTVRiW~if~s~~~vEtl~i~sdvl~vsf 528 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--------KTVRIWDIFSSSGTVETLEIRSDVLAVSF 528 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--------ceEEEEEeeccCceeeeEeeccceeEEEE
Confidence 5 79999999999999999999999999999999999999988 99999999654222222234445555556
Q ss_pred ecccccccccceEEcCCccccccceeeccCCcEEeecccccccc
Q 000450 728 CKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771 (1496)
Q Consensus 728 ~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~ 771 (1496)
.|. |.......+ ||.|-+|+.+...+.
T Consensus 529 rPd------------G~elaVaTl-----dgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 529 RPD------------GKELAVATL-----DGQITFFDIKEAVQV 555 (893)
T ss_pred cCC------------CCeEEEEEe-----cceEEEEEhhhceee
Confidence 531 333333333 889999998665544
No 10
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.8e-25 Score=263.17 Aligned_cols=605 Identities=13% Similarity=0.116 Sum_probs=352.5
Q ss_pred eeeEecCCCCCC---------ceEEEEEEcCCCCEEEEE--eCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeecc
Q 000450 5 SVACIWSGTPPS---------HRVTATSALTQPPTLYTG--GSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICY 73 (1496)
Q Consensus 5 ~~~~lw~~~~ps---------h~Vtava~SpDg~~LaTG--s~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~ 73 (1496)
=|++|+...-.+ .++||+|||++|+++||| +..-.+++|++.. ...++.|..|...|+|++
T Consensus 58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~-----h~vVAEfvdHKY~vtcva--- 129 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF-----HGVVAEFVDHKYNVTCVA--- 129 (1080)
T ss_pred cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc-----ccchhhhhhccccceeee---
Confidence 367777766543 259999999999999998 4777899999985 346778899999999999
Q ss_pred ccccccCcccccccccccccccccccCCCCEEEEEeC--CCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEE-
Q 000450 74 PAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACT--DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYV- 150 (1496)
Q Consensus 74 ~~~~s~dg~~~~~~~~~~~~~~g~~s~d~~~LaSas~--DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll- 150 (1496)
|+|.++|++|.+. |-.|.+||+..--.....+. .+...+..|++++-|+
T Consensus 130 ------------------------Fsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnki----ss~Vsav~fsEdgSYfv 181 (1080)
T KOG1408|consen 130 ------------------------FSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKI----SSVVSAVAFSEDGSYFV 181 (1080)
T ss_pred ------------------------ecCCCcEEEeeccccceEEEhhhhhhccccccccc----ceeEEEEEEccCCceee
Confidence 6889999999765 77888999874433333333 2345677889998764
Q ss_pred EEcccccccCCcccccccc----cccccccccccCCCCCCCCccEEEE-----EECCceEEEEEEecCccccCC------
Q 000450 151 CIGCCFIDTNQLSDHHSFE----SVEGDLVSEDKEVPMKNPPKCTLVI-----VDTYGLTIVQTVFHGNLSIGP------ 215 (1496)
Q Consensus 151 ~~G~~~id~~~l~~~~~~~----~v~~~~~~~d~~~~~~~~~~~~I~v-----~D~~t~~~l~~l~~~~~s~~~------ 215 (1496)
.+|...+.-|.|.....++ -.....++-|..........|.+.+ |.......+..+.+.++--.|
T Consensus 182 T~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTT 261 (1080)
T KOG1408|consen 182 TSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTT 261 (1080)
T ss_pred eeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhcc
Confidence 4566556666665543220 1111111212211112222222221 111111111122221111112
Q ss_pred -eEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcccccc-----C---CCcccCCCccceeeeccCcccCceEEEE
Q 000450 216 -WKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREE-----G---NGLCKSSSQLDMAILQNGVVEGGHLVSV 286 (1496)
Q Consensus 216 -i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~-----~---~~l~~~ek~i~~v~~~~~~~~~~~~va~ 286 (1496)
.+|++++. ..+++|+.+|+|+|+..++..-....+ + ..+.+.+ .+.. ...++.+.+-..+.|
T Consensus 262 nAnCIcVs~-------r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~-~~~s-~~~~a~fPD~IA~~F 332 (1080)
T KOG1408|consen 262 NANCICVSS-------RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPE-PKNS-ESSPAIFPDAIACQF 332 (1080)
T ss_pred ccceeeeec-------ceEEEeeccceeeecCcchhhhccccccccccccchhhccccc-cccc-ccCcccCCceeEEEe
Confidence 35666661 457888999999999876531100000 0 0111111 1100 112223333456667
Q ss_pred ecCCcEEEEEeCCeEEEEEcCCCcc--ccee-eeecceeEeeCCCCCceeeeeEEeechhhhhhcccccccccccceEEE
Q 000450 287 ATCGNIIALVLKDHCIFRLLGSGST--IGEI-CFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAV 363 (1496)
Q Consensus 287 s~dg~~l~t~~~~~~~~~l~d~~~~--ige~-~~~~~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 363 (1496)
.+....+..+-.++-++ +||..++ +|.. .+..+-.|.- +...+.. .++.....+ -..+.|+.
T Consensus 333 det~~klscVYndhSlY-vWDvrD~~kvgk~~s~lyHS~ciW---------~Ve~~p~----nv~~~~~ac-lp~~cF~T 397 (1080)
T KOG1408|consen 333 DETTDKLSCVYNDHSLY-VWDVRDVNKVGKCSSMLYHSACIW---------DVENLPC----NVHSPTAAC-LPRGCFTT 397 (1080)
T ss_pred cCCCceEEEEEcCceEE-EEeccccccccceeeeeeccceee---------eeccccc----cccCccccc-CCccceeE
Confidence 76655566665555332 4666652 2222 1111111110 0000000 000110000 01346788
Q ss_pred EcCCCcEEEEEEec--CCCCCcccCee-eecCcCCCCCceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEcccc
Q 000450 364 WDNRGSAIVYAISY--MNEKFDYEPHF-EIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQK 440 (1496)
Q Consensus 364 w~~~G~~~l~~l~~--~~~~~~~~~~~-~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~ 440 (1496)
.+.||.+++|.+.+ .++.+++..+. +..+.++..+. -+.+.-....-++......|++...+-.+
T Consensus 398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~---------~q~~~d~~~~~fdka~~s~~d~r~G~R~~--- 465 (1080)
T KOG1408|consen 398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST---------QQIMHDASAGIFDKALVSTCDSRFGFRAL--- 465 (1080)
T ss_pred ecCCCcEEEeecccccccceeecccchhhhhcCccccCc---------hhhhhhccCCcccccchhhcCcccceEEE---
Confidence 88888888888865 33344332221 11111111111 00000000000111111111111111100
Q ss_pred CCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeecc
Q 000450 441 HSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISE 520 (1496)
Q Consensus 441 ~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~ 520 (1496)
.+.++|. .++.....|.++++++.+- .....+..|...|.|+.|...
T Consensus 466 --------------------------~vSp~gq---hLAsGDr~GnlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 466 --------------------------AVSPDGQ---HLASGDRGGNLRVYDLQEL----EYTCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred --------------------------EECCCcc---eecccCccCceEEEEehhh----hhhhheecccceeEEEeecCc
Confidence 1223441 2555556688888887653 334456899999999985433
Q ss_pred ccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC
Q 000450 521 SFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1496)
Q Consensus 521 ~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D 600 (1496)
. ..-..|++|+.|.-|.|++.. ..-.+++++.+|...|+++.|.-. + .+..++|++.|
T Consensus 513 ~-~~~kLLASasrdRlIHV~Dv~--------------rny~l~qtld~HSssITsvKFa~~-----g--ln~~MiscGAD 570 (1080)
T KOG1408|consen 513 V-LTNKLLASASRDRLIHVYDVK--------------RNYDLVQTLDGHSSSITSVKFACN-----G--LNRKMISCGAD 570 (1080)
T ss_pred h-hhhHhhhhccCCceEEEEecc--------------cccchhhhhcccccceeEEEEeec-----C--CceEEEeccCc
Confidence 2 111278999999999993321 122457889999999999999764 1 14689999999
Q ss_pred CcEEEEECCCCceEEEEccc-----CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC---CCCCc
Q 000450 601 CSIRIWDLGSGNLITVMHHH-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG---HPNYP 672 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H-----~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g---H~~~V 672 (1496)
+.|.+--.....-...|.-| ...++.+++.|. .+++++++.|+.|+|||+++++..+.|.| |.+..
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeeeCCC------cceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 87754333211111222222 346889999998 78999999999999999999999999975 66678
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccce
Q 000450 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLL 752 (1496)
Q Consensus 673 ~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~ 752 (1496)
..+...|.|-||++.|.| .++.++|..+|+++..+.||...++.+.|.+. -.++.
T Consensus 645 IKv~lDPSgiY~atScsd--------ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD-----------------CkHlI 699 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSD--------KTLCFVDFVSGECVAQMTGHSEAVTGVKFLND-----------------CKHLI 699 (1080)
T ss_pred EEEEECCCccEEEEeecC--------CceEEEEeccchhhhhhcCcchheeeeeeccc-----------------chhhe
Confidence 899999999999999999 99999999999999999999998888877631 12345
Q ss_pred eeccCCcEEeecccc
Q 000450 753 PIHEDGTFRQSQIQN 767 (1496)
Q Consensus 753 ~~~~D~~ir~W~l~~ 767 (1496)
+++.|+.|-+|.+..
T Consensus 700 SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecCCceEEEEECch
Confidence 667799999998743
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=3.2e-23 Score=239.63 Aligned_cols=532 Identities=12% Similarity=0.077 Sum_probs=313.6
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
-++|++|...+||.|-++|+|...|.|++||.. +.+.-.+..+.--+++|..|+
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt---~~~hiLKnef~v~aG~I~Di~----------------------- 110 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTT---QKEHILKNEFQVLAGPIKDIS----------------------- 110 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEecc---Ccceeeeeeeeecccccccce-----------------------
Confidence 467999999999999999999999999999987 334455666777788999998
Q ss_pred ccccccCCCCEEEEEeCC----CeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCC-CC-eEEEEcccccccCCcccccc
Q 000450 94 VMGKSSLDNGALISACTD----GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS-NP-RYVCIGCCFIDTNQLSDHHS 167 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~D----G~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~-~~-~ll~~G~~~id~~~l~~~~~ 167 (1496)
++.|+++++..++. |.+.+||. |.-+-...-+ ......+.|.+ .+ |.+.+|.+
T Consensus 111 ----Wd~ds~RI~avGEGrerfg~~F~~DS--G~SvGei~Gh---Sr~ins~~~KpsRPfRi~T~sdD------------ 169 (603)
T KOG0318|consen 111 ----WDFDSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGH---SRRINSVDFKPSRPFRIATGSDD------------ 169 (603)
T ss_pred ----eCCCCcEEEEEecCccceeEEEEecC--CCccceeecc---ceeEeeeeccCCCceEEEeccCC------------
Confidence 57778888887763 45667774 4332222111 11122234443 33 44444444
Q ss_pred cccccccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEEC
Q 000450 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPI 247 (1496)
Q Consensus 168 ~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl 247 (1496)
..|.+|+-.=.+.-.+... +...|+++.++ |||.. .+.++.||.+-++|=
T Consensus 170 ----------------------n~v~ffeGPPFKFk~s~r~---HskFV~~VRys---PDG~~--Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 170 ----------------------NTVAFFEGPPFKFKSSFRE---HSKFVNCVRYS---PDGSR--FATAGSDGKIYIYDG 219 (603)
T ss_pred ----------------------CeEEEeeCCCeeeeecccc---cccceeeEEEC---CCCCe--EEEecCCccEEEEcC
Confidence 5666665433333333322 33458999998 45553 566699999999985
Q ss_pred CCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCC--cccceeeeecceeEee
Q 000450 248 SKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSG--STIGEICFVDNLFCLE 325 (1496)
Q Consensus 248 ~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~--~~ige~~~~~~~l~~~ 325 (1496)
..+ +.+.+- ....+|.+++..++++||+..+++++.+.- .++||.. ..+.++...++
T Consensus 220 ktg--------e~vg~l-------~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~----- 278 (603)
T KOG0318|consen 220 KTG--------EKVGEL-------EDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGST----- 278 (603)
T ss_pred CCc--------cEEEEe-------cCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCc-----
Confidence 443 222221 223458888999999999999999887752 3446544 34444322211
Q ss_pred CCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCc-eeeEE
Q 000450 326 GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGV-KFSIH 404 (1496)
Q Consensus 326 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~-~~~~~ 404 (1496)
.....+|..+- . ..++.=+.+|....++..... . +.+-..++. .-.+.
T Consensus 279 ---v~dqqvG~lWq-k-----------------d~lItVSl~G~in~ln~~d~~-~---------~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 279 ---VEDQQVGCLWQ-K-----------------DHLITVSLSGTINYLNPSDPS-V---------LKVISGHNKSITALT 327 (603)
T ss_pred ---hhceEEEEEEe-C-----------------CeEEEEEcCcEEEEecccCCC-h---------hheecccccceeEEE
Confidence 01122333332 1 133333444444333322111 0 011111111 11233
Q ss_pred EeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeeccccc
Q 000450 405 FIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQ 484 (1496)
Q Consensus 405 f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~ 484 (1496)
-..++.++++.. . +.++.-|..... ..+++..++..-.+--.. ....| .+.+...+
T Consensus 328 v~~d~~~i~Sgs-----y------DG~I~~W~~~~g-----~~~~~~g~~h~nqI~~~~----~~~~~----~~~t~g~D 383 (603)
T KOG0318|consen 328 VSPDGKTIYSGS-----Y------DGHINSWDSGSG-----TSDRLAGKGHTNQIKGMA----ASESG----ELFTIGWD 383 (603)
T ss_pred EcCCCCEEEeec-----c------CceEEEEecCCc-----cccccccccccceEEEEe----ecCCC----cEEEEecC
Confidence 345566676643 2 334777763211 111222222100000000 00011 24455556
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEE
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~ 564 (1496)
.+++.-++..+.........+. +... ++++.++.. .++..+ ++.|.+ ++. . ....
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg-~QP~--~lav~~d~~----~avv~~-~~~iv~--l~~------------~---~~~~ 438 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLG-SQPK--GLAVLSDGG----TAVVAC-ISDIVL--LQD------------Q---TKVS 438 (603)
T ss_pred CeEEEEecccCcccccceeecC-CCce--eEEEcCCCC----EEEEEe-cCcEEE--Eec------------C---Ccce
Confidence 6666666554433222211111 1111 333333322 333333 334444 110 0 0011
Q ss_pred EEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce--EEEEcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 565 ~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~--l~~~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
... -.-.+.+++++|+ +..++.|+.|+.|+++.+..+.+ ......|.++|++++++|| +.+|
T Consensus 439 ~~~-~~y~~s~vAv~~~---------~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd------~~yl 502 (603)
T KOG0318|consen 439 SIP-IGYESSAVAVSPD---------GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD------GAYL 502 (603)
T ss_pred eec-cccccceEEEcCC---------CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC------CcEE
Confidence 111 1224679999997 89999999999999999986553 3466789999999999999 9999
Q ss_pred EEEeCCCcEEEEECCCCcEEEE-ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCC
Q 000450 643 LSVGEDFSVALASLETLRVERM-FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTAS 720 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~-~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a 720 (1496)
+++...+.|.+||+.+++.... ..-|.+.|.+++|+|+..++++|+.| -.|.||+++.. +.+.....|..
T Consensus 503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD--------t~Viiysv~kP~~~i~iknAH~~ 574 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD--------TNVIIYSVKKPAKHIIIKNAHLG 574 (603)
T ss_pred EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc--------ceEEEEEccChhhheEecccccc
Confidence 9999999999999998877432 33499999999999999999999999 89999999764 34666677777
Q ss_pred CceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 721 HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 721 ~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+..+.+.+ ...+++..+|..+|.|++
T Consensus 575 gVn~v~wld------------------e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 575 GVNSVAWLD------------------ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred CceeEEEec------------------CceEEeccCcceeEEecc
Confidence 665555542 123445566999999986
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=243.88 Aligned_cols=200 Identities=20% Similarity=0.277 Sum_probs=173.2
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+|++.+.+..|+.+. .|++|+.|.++.+ ||+++++....|.||.+.|.+|+++|.
T Consensus 142 ~gHtgylScC~f~dD~-----~ilT~SGD~TCal---------------WDie~g~~~~~f~GH~gDV~slsl~p~---- 197 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLDDN-----HILTGSGDMTCAL---------------WDIETGQQTQVFHGHTGDVMSLSLSPS---- 197 (343)
T ss_pred cCccceeEEEEEcCCC-----ceEecCCCceEEE---------------EEcccceEEEEecCCcccEEEEecCCC----
Confidence 4566667777766655 4999999999988 557788999999999999999999994
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~ 665 (1496)
+++.++||+.|++.++||++.+.+.++|.+|...|++|.|.|+ |.-|++|+.|+++++||++..+.+..|
T Consensus 198 ----~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~------G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 198 ----DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS------GDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred ----CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccC------CCeeeecCCCceeEEEeecCCcEEeee
Confidence 2899999999999999999999999999999999999999999 999999999999999999999998888
Q ss_pred cCC--CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcC
Q 000450 666 PGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNG 743 (1496)
Q Consensus 666 ~gH--~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g 743 (1496)
... ..+|++|+||-.|++|++|..| .++.|||.-.++.+..|.||..++.++..++ +|
T Consensus 268 s~~~~~~gitSv~FS~SGRlLfagy~d--------~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~------------DG 327 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKSGRLLFAGYDD--------FTCNVWDTLKGERVGVLAGHENRVSCLGVSP------------DG 327 (343)
T ss_pred ccCcccCCceeEEEcccccEEEeeecC--------CceeEeeccccceEEEeeccCCeeEEEEECC------------CC
Confidence 632 3478999999999999999887 9999999999999999999999998886663 13
Q ss_pred CccccccceeeccCCcEEeec
Q 000450 744 NTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 744 ~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
..+.+++. |.++|+|.
T Consensus 328 ~av~TgSW-----Ds~lriW~ 343 (343)
T KOG0286|consen 328 MAVATGSW-----DSTLRIWA 343 (343)
T ss_pred cEEEecch-----hHheeecC
Confidence 33344444 88999984
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.4e-27 Score=266.85 Aligned_cols=223 Identities=16% Similarity=0.210 Sum_probs=198.0
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~ 554 (1496)
.+++.+.++++++|+..+.. ..+.+.+|...|..++ |+|+ +|++++.|.+-++
T Consensus 233 ~lat~s~Dgtvklw~~~~e~----~l~~l~gH~~RVs~Va------fHPsG~~L~TasfD~tWRl--------------- 287 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQET----PLQDLEGHLARVSRVA------FHPSGKFLGTASFDSTWRL--------------- 287 (459)
T ss_pred ceeeeccCCceeeeccCCCc----chhhhhcchhhheeee------ecCCCceeeecccccchhh---------------
Confidence 47889999999999999864 4667899999999999 6665 8999999998777
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCC
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
||..++.......||...|.+++|+|| |.+++|||.|..-+|||+++|.++..+.+|..+|..|.|+|+
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~D---------GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN-- 356 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPD---------GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN-- 356 (459)
T ss_pred cccccchhhHhhcccccccceeEecCC---------CceeeccCccchhheeecccCcEEEEecccccceeeEeECCC--
Confidence 456666667777999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
|..++|||.|++++|||++..+++.++++|.+-|+.|+|+| .|.+|+|++.| ++++||..+++.+++
T Consensus 357 ----Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD--------~t~kiWs~~~~~~~k 424 (459)
T KOG0272|consen 357 ----GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD--------NTVKIWSTRTWSPLK 424 (459)
T ss_pred ----ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC--------cceeeecCCCcccch
Confidence 99999999999999999999999999999999999999999 77899999998 999999999999999
Q ss_pred EEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
++.||..+++.+... ++ |.... +.+-|.++|.|.
T Consensus 425 sLaGHe~kV~s~Dis----~d--------~~~i~-----t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 SLAGHEGKVISLDIS----PD--------SQAIA-----TSSFDRTIKLWR 458 (459)
T ss_pred hhcCCccceEEEEec----cC--------CceEE-----EeccCceeeecc
Confidence 999999999987544 11 33333 333499999995
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=4e-23 Score=238.83 Aligned_cols=405 Identities=15% Similarity=0.167 Sum_probs=263.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEee---ccccceeEeeeccccccccCccccccccccccccc
Q 000450 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLC---GHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1496)
Q Consensus 19 Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~---GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1496)
|.|+.|+|||...||.+.||+|.++|-.+ + ..+..|. +|.+.|-+|+
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGkt---g--e~vg~l~~~~aHkGsIfals------------------------- 242 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKT---G--EKVGELEDSDAHKGSIFALS------------------------- 242 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCC---c--cEEEEecCCCCccccEEEEE-------------------------
Confidence 99999999999999999999999999885 3 3455566 8999999999
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccc
Q 000450 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1496)
Q Consensus 96 g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~ 175 (1496)
++||++.++|+|.|.+++|||+.+.+|+....+...++...--+-.+ ...++.+..
T Consensus 243 --WsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl--------------------- 298 (603)
T KOG0318|consen 243 --WSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSL--------------------- 298 (603)
T ss_pred --ECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEEc---------------------
Confidence 68999999999999999999999999998876652211111111112 344444333
Q ss_pred cccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcccc
Q 000450 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1496)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~ 255 (1496)
++.+-.+++....+++.+.. +... |+++++++ |+ ..++.|+.||.|.-|++..+.
T Consensus 299 -------------~G~in~ln~~d~~~~~~i~G-HnK~--ITaLtv~~---d~--~~i~SgsyDG~I~~W~~~~g~---- 353 (603)
T KOG0318|consen 299 -------------SGTINYLNPSDPSVLKVISG-HNKS--ITALTVSP---DG--KTIYSGSYDGHINSWDSGSGT---- 353 (603)
T ss_pred -------------CcEEEEecccCCChhheecc-cccc--eeEEEEcC---CC--CEEEeeccCceEEEEecCCcc----
Confidence 38899999999887776665 6666 99999984 44 358888999999999998762
Q ss_pred ccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeCCCCCceeee
Q 000450 256 EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIG 335 (1496)
Q Consensus 256 ~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v~ 335 (1496)
..++.+ ..|..-+..++.+..+.++-.+-++.. |..+..+ .
T Consensus 354 --~~~~~g-----------~~h~nqI~~~~~~~~~~~~t~g~Dd~l--~~~~~~~------------------------~ 394 (603)
T KOG0318|consen 354 --SDRLAG-----------KGHTNQIKGMAASESGELFTIGWDDTL--RVISLKD------------------------N 394 (603)
T ss_pred --cccccc-----------ccccceEEEEeecCCCcEEEEecCCeE--EEEeccc------------------------C
Confidence 111111 112222233443332333333333321 1111111 0
Q ss_pred eEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEeecceeeeee
Q 000450 336 AMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRM 415 (1496)
Q Consensus 336 g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v 415 (1496)
++.. . +.+ ++ ..++.. +++
T Consensus 395 ~~t~-~-----------------~~~------------~l-------g~QP~~------------------------lav 413 (603)
T KOG0318|consen 395 GYTK-S-----------------EVV------------KL-------GSQPKG------------------------LAV 413 (603)
T ss_pred cccc-c-----------------cee------------ec-------CCCcee------------------------EEE
Confidence 0000 0 000 00 000000 000
Q ss_pred eeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCC
Q 000450 416 ETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDS 495 (1496)
Q Consensus 416 ~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~ 495 (1496)
. .++. +.+.. +.. + -.+.++. .+ + ..
T Consensus 414 ~-----~d~~------~avv~-~~~---~----iv~l~~~---------------~~-----~-----------~~---- 439 (603)
T KOG0318|consen 414 L-----SDGG------TAVVA-CIS---D----IVLLQDQ---------------TK-----V-----------SS---- 439 (603)
T ss_pred c-----CCCC------EEEEE-ecC---c----EEEEecC---------------Cc-----c-----------ee----
Confidence 0 0000 00000 000 0 0111110 00 0 00
Q ss_pred CCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEE
Q 000450 496 RQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLC 575 (1496)
Q Consensus 496 ~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~ 575 (1496)
.+ + .-..+++++.++.. .++.|+.||.+.|+...- ........+..|.++|++
T Consensus 440 ~~-------~---~y~~s~vAv~~~~~----~vaVGG~Dgkvhvysl~g-------------~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 440 IP-------I---GYESSAVAVSPDGS----EVAVGGQDGKVHVYSLSG-------------DELKEEAKLLEHRAAITD 492 (603)
T ss_pred ec-------c---ccccceEEEcCCCC----EEEEecccceEEEEEecC-------------CcccceeeeecccCCceE
Confidence 00 0 11234566555554 899999999999965541 111334456789999999
Q ss_pred EEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000450 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1496)
Q Consensus 576 La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lW 654 (1496)
++|+|| +.+|++|...+.|.+||..+.+.. ..+.-|+..|.+++|+|+ ...+|+||-|..|.+|
T Consensus 493 vaySpd---------~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~------n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 493 VAYSPD---------GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN------NKLVATGSLDTNVIIY 557 (603)
T ss_pred EEECCC---------CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC------ceEEEeccccceEEEE
Confidence 999998 899999999999999999988764 344559999999999999 7899999999999999
Q ss_pred ECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 655 SLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 655 dl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+++.. +.+.....|...|+.+.|- |...+++.+.| ..|++|.+.
T Consensus 558 sv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~D--------a~iK~W~v~ 602 (603)
T KOG0318|consen 558 SVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQD--------ANIKVWNVT 602 (603)
T ss_pred EccChhhheEeccccccCceeEEEe-cCceEEeccCc--------ceeEEeccc
Confidence 99764 3355556798899999996 56788999988 899999874
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=3.1e-23 Score=250.21 Aligned_cols=511 Identities=16% Similarity=0.172 Sum_probs=323.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCce-ee-eEEeeccccceeEeeeccccccccCcccccccccccccccccccCCCCE
Q 000450 27 QPPTLYTGGSDGSILWWSFSDSSYSEI-KP-VAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGA 104 (1496)
Q Consensus 27 Dg~~LaTGs~DG~I~lWdl~~~~~~~~-~~-~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d~~~ 104 (1496)
=|..|+++..++.+.+|+... ..+. .. ...+.+.-..|++|. +|. .|.++
T Consensus 123 fGe~lia~d~~~~l~vw~~s~--~~~e~~l~~~~~~~~~~~Ital~--HP~---------TYLNK--------------- 174 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSS--IQEELYLQSTFLKVEGDFITALL--HPS---------TYLNK--------------- 174 (910)
T ss_pred ecceEEEEEccCcEEEEEecc--ccccccccceeeeccCCceeeEe--cch---------hheee---------------
Confidence 477888888899999999873 1111 11 111222222288874 565 45555
Q ss_pred EEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEc--CCCCeEEEEcccccccCCcccccccccccccccccccCC
Q 000450 105 LISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTL--PSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEV 182 (1496)
Q Consensus 105 LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~--s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~~~ 182 (1496)
++-|+.+|.|.+||+.+|+.+...+.. +..|... +|--.++++|.-
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~~-----~s~IT~ieqsPaLDVVaiG~~--------------------------- 222 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQEF-----FSRITAIEQSPALDVVAIGLE--------------------------- 222 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEeccc-----ccceeEeccCCcceEEEEecc---------------------------
Confidence 899999999999999999999876543 2444433 455578888875
Q ss_pred CCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccccCCCcc
Q 000450 183 PMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLC 262 (1496)
Q Consensus 183 ~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~~~~l~ 262 (1496)
+++|.+++...++++.++.+ .+. .|+.++|. .||. .-+++|+..|.+-+||+++.+.
T Consensus 223 ------~G~ViifNlK~dkil~sFk~-d~g--~VtslSFr---tDG~-p~las~~~~G~m~~wDLe~kkl---------- 279 (910)
T KOG1539|consen 223 ------NGTVIIFNLKFDKILMSFKQ-DWG--RVTSLSFR---TDGN-PLLASGRSNGDMAFWDLEKKKL---------- 279 (910)
T ss_pred ------CceEEEEEcccCcEEEEEEc-ccc--ceeEEEec---cCCC-eeEEeccCCceEEEEEcCCCee----------
Confidence 49999999999999999987 343 49999987 4665 3344448889999999998631
Q ss_pred cCCCccceeeeccCcccCceEEEEecCCcEEEEEeC-CeEEEEEcCCCcccceeeeecceeEeeCCCCCceeeeeEEeec
Q 000450 263 KSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLK-DHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLER 341 (1496)
Q Consensus 263 ~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~-~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v~g~~~~~ 341 (1496)
+. ...+.|.+++....|.+..-.+++.+. +...+|.+|+++ |. | .+|.+..+....+..-.++...
T Consensus 280 -----~~--v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d--g~---p-R~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 280 -----IN--VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD--GV---P-RLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred -----ee--eeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC--Cc---c-hheeeccCCCCCchheeeeccC
Confidence 11 124456777788888888766666554 455778888877 21 2 4444433322211111111100
Q ss_pred hhhhhhcccccccccccceEEEEcCCCcEEEEEEecC--CCCCcccCeeeecCcCCCCCceeeEEEeecceeeeeeeeee
Q 000450 342 VVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYM--NEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVC 419 (1496)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~--~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~ 419 (1496)
+ ..+.-...|...+.|.+... +..... -+++......+.
T Consensus 347 g----------------~~ilsa~~Drt~r~fs~~~e~~~~~l~~---~~~~~~~kk~~~-------------------- 387 (910)
T KOG1539|consen 347 G----------------HFILSAKQDRTLRSFSVISESQSQELGQ---LHNKKRAKKVNV-------------------- 387 (910)
T ss_pred c----------------EEEEecccCcchhhhhhhHHHHhHhhcc---cccccccccccc--------------------
Confidence 0 01111112222221211100 000000 000000000000
Q ss_pred ccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCCCC
Q 000450 420 FHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAG 499 (1496)
Q Consensus 420 ~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~ 499 (1496)
+ .......+|++.+ -..+..+.+|.. .++....+..++.|+..+... |
T Consensus 388 ~-~~~~~k~p~i~~f----------------a~~~~RE~~W~N--------------v~~~h~~~~~~~tW~~~n~~~-G 435 (910)
T KOG1539|consen 388 F-STEKLKLPPIVEF----------------AFENAREKEWDN--------------VITAHKGKRSAYTWNFRNKTS-G 435 (910)
T ss_pred c-chhhhcCCcceee----------------ecccchhhhhcc--------------eeEEecCcceEEEEeccCccc-c
Confidence 0 0011111222221 111222234522 233334445667787766433 2
Q ss_pred Ccc---cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE---ecCCccE
Q 000450 500 DGR---DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF---LGHTGAV 573 (1496)
Q Consensus 500 ~~~---~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l---~gH~~~V 573 (1496)
... ..+......++|+++..++. ..+.|++.|.|.+++.+ +|..+..+ ..|.++|
T Consensus 436 ~~~L~~~~~~~~~~~~~av~vs~CGN----F~~IG~S~G~Id~fNmQ---------------SGi~r~sf~~~~ah~~~V 496 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDINATAVCVSFCGN----FVFIGYSKGTIDRFNMQ---------------SGIHRKSFGDSPAHKGEV 496 (910)
T ss_pred cEEecCccccccCcceEEEEEeccCc----eEEEeccCCeEEEEEcc---------------cCeeecccccCccccCce
Confidence 111 11122346788888888877 89999999999995544 55666666 5799999
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEE
Q 000450 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~l 653 (1496)
+.|+.... ++.++|++.||.+++||..+..++..++.- .++..+..+.. ...++.+..|-.|++
T Consensus 497 ~gla~D~~---------n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~------s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 497 TGLAVDGT---------NRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRV------SDLLAIALDDFSIRV 560 (910)
T ss_pred eEEEecCC---------CceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeeh------hhhhhhhcCceeEEE
Confidence 99998765 789999999999999999998888887653 45777777766 679999999999999
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeccccc
Q 000450 654 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISM 733 (1496)
Q Consensus 654 Wdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~ 733 (1496)
+|..+.+.++.|.||.+.|++++|||||++|++++.| ++|++||+.||.++..+.-.. ..+.+.|.
T Consensus 561 vD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD--------~tIr~wDlpt~~lID~~~vd~-~~~sls~S----- 626 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD--------STIRTWDLPTGTLIDGLLVDS-PCTSLSFS----- 626 (910)
T ss_pred EEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC--------CcEEEEeccCcceeeeEecCC-cceeeEEC-----
Confidence 9999999999999999999999999999999999999 999999999999987765433 33333343
Q ss_pred ccccceEEcCCccccccceeeccC-CcEEeecc
Q 000450 734 NSISGSVLNGNTSVSSLLLPIHED-GTFRQSQI 765 (1496)
Q Consensus 734 ~~~sg~v~~g~~~~s~~l~~~~~D-~~ir~W~l 765 (1496)
.+|+.....+. | .-+..|.=
T Consensus 627 -------PngD~LAT~Hv-----d~~gIylWsN 647 (910)
T KOG1539|consen 627 -------PNGDFLATVHV-----DQNGIYLWSN 647 (910)
T ss_pred -------CCCCEEEEEEe-----cCceEEEEEc
Confidence 23666555444 5 34777853
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-22 Score=220.34 Aligned_cols=142 Identities=21% Similarity=0.355 Sum_probs=120.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.|+.++.|+++++|+.+ +-+....+.||++.|+.++++|| |.++++|+.||.+.+|
T Consensus 164 ~Ivs~s~DktvKvWnl~---------------~~~l~~~~~gh~~~v~t~~vSpD---------GslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLR---------------NCQLRTTFIGHSGYVNTVTVSPD---------GSLCASGGKDGEAMLW 219 (315)
T ss_pred EEEEccCCceEEEEccC---------------CcchhhccccccccEEEEEECCC---------CCEEecCCCCceEEEE
Confidence 68889999999994333 34566778999999999999998 9999999999999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec----CC-----CCCcEEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP----GH-----PNYPAKVVW 677 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~----gH-----~~~V~~V~~ 677 (1496)
|++.++.+..+ .|...|.+++|+|+ ++.++...+.+|+|||+++++++..+. +. .....+++|
T Consensus 220 dL~~~k~lysl-~a~~~v~sl~fspn-------rywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw 291 (315)
T KOG0279|consen 220 DLNEGKNLYSL-EAFDIVNSLCFSPN-------RYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW 291 (315)
T ss_pred EccCCceeEec-cCCCeEeeEEecCC-------ceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence 99999998877 57789999999997 577777788899999999998876653 22 123467899
Q ss_pred cCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 678 spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
++||..|++|-.| +.|++|++..
T Consensus 292 s~dG~tLf~g~td--------~~irv~qv~~ 314 (315)
T KOG0279|consen 292 SADGQTLFAGYTD--------NVIRVWQVAK 314 (315)
T ss_pred cCCCcEEEeeecC--------CcEEEEEeec
Confidence 9999999999988 9999998753
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=234.22 Aligned_cols=151 Identities=21% Similarity=0.312 Sum_probs=133.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc------cCcCCCEEEEEeCC
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK------GWSFNEVLVSGSMD 600 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~------~~~~~~~L~SGs~D 600 (1496)
.+++++.|.++++|. ..++.+...+++|.-+|.|++|.|....++ +...++++.+|+.|
T Consensus 249 i~As~s~dqtl~vW~---------------~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWV---------------VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred EEEecCCCceEEEEE---------------eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 466777888888843 445677788999999999999988643222 11235799999999
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd 680 (1496)
++|++||+.+|.++.++.+|...|..++|+|. |++|+|+.+|+++++||+++++|...++.|...|+++.|+.+
T Consensus 314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~------Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG------GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT 387 (406)
T ss_pred ceEEEEeccCCeEEEEEecccceeeeeEEcCC------CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCC
Confidence 99999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 681 RGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 681 g~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
-.|+++|+-| .++++|.-
T Consensus 388 ~p~VvTGsVd--------qt~KvwEc 405 (406)
T KOG0295|consen 388 APYVVTGSVD--------QTVKVWEC 405 (406)
T ss_pred CceEEecccc--------ceeeeeec
Confidence 9999999999 99999974
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=1.1e-22 Score=232.87 Aligned_cols=161 Identities=24% Similarity=0.300 Sum_probs=145.1
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEE
Q 000450 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1496)
Q Consensus 528 lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWD 607 (1496)
+++.+.||.|.|+..+ ...|+.++.||++.|+++.|.|. +.+|+|+|.|+|++||.
T Consensus 332 F~ts~td~~i~V~kv~---------------~~~P~~t~~GH~g~V~alk~n~t---------g~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVG---------------EDRPVKTFIGHHGEVNALKWNPT---------GSLLASCSDDGTLKIWS 387 (524)
T ss_pred EeecCCCceEEEEEec---------------CCCcceeeecccCceEEEEECCC---------CceEEEecCCCeeEeee
Confidence 5566778888885544 23678899999999999999997 89999999999999999
Q ss_pred CCCCceEEEEcccCCCEEEEEECCCCCC---CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEE
Q 000450 608 LGSGNLITVMHHHVAPVRQIILSPPQTE---HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1496)
Q Consensus 608 l~tg~~l~~~~~H~~~V~~l~~sPd~~~---~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L 684 (1496)
.....+.+.|.+|...|..+.|+|.+.. ...+..+++++.|++|++||+..+.+++.|..|..+|.+++|+|+|+|+
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 9999999999999999999999998633 3445689999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a 720 (1496)
++|+.| |.|.+|+++++++.+.+.|-..
T Consensus 468 AsGs~d--------g~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 468 ASGSLD--------GCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred EecCCC--------CeeEeccccchheeEeecCCCe
Confidence 999999 9999999999999999988654
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=1.3e-22 Score=232.25 Aligned_cols=169 Identities=17% Similarity=0.267 Sum_probs=142.3
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+.+|.+.|.++.+.+... .|++++.|++++| |. .....+...|.+|+..|..+.|+|+...
T Consensus 355 ~~GH~g~V~alk~n~tg~----LLaS~SdD~Tlki--Ws-------------~~~~~~~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTGS----LLASCSDDGTLKI--WS-------------MGQSNSVHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred eecccCceEEEEECCCCc----eEEEecCCCeeEe--ee-------------cCCCcchhhhhhhccceeeEeecCCCCc
Confidence 345677777777444333 8999999999999 33 2334567788999999999999997432
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
..-+..+..+++++.|++|++||+..|.++++|..|+.+|.+|+|+|+ |.++++|+.||.|.+|+.++++..+.
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~------g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN------GRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC------CcEEEecCCCCeeEeccccchheeEe
Confidence 223345779999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+.+. +.|..++|+.+|.+|..+-.| +.+.+-|++
T Consensus 490 ~~~~-~~Ifel~Wn~~G~kl~~~~sd--------~~vcvldlr 523 (524)
T KOG0273|consen 490 YQGT-GGIFELCWNAAGDKLGACASD--------GSVCVLDLR 523 (524)
T ss_pred ecCC-CeEEEEEEcCCCCEEEEEecC--------CCceEEEec
Confidence 8754 459999999999999888887 999998875
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=217.69 Aligned_cols=141 Identities=19% Similarity=0.245 Sum_probs=129.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++|+.|+..++ ||...+.++++|.||...|+++.|+|+ +.-+++||.|++.++|
T Consensus 201 tFvSg~cD~~akl---------------WD~R~~~c~qtF~ghesDINsv~ffP~---------G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 201 TFVSGGCDKSAKL---------------WDVRSGQCVQTFEGHESDINSVRFFPS---------GDAFATGSDDATCRLY 256 (343)
T ss_pred eEEecccccceee---------------eeccCcceeEeecccccccceEEEccC---------CCeeeecCCCceeEEE
Confidence 5788888998888 446677899999999999999999997 8999999999999999
Q ss_pred ECCCCceEEEEccc--CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEE
Q 000450 607 DLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H--~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L 684 (1496)
|++..+.+..|... ..+|++++|+.. |+++.+|..|.++.+||.-.++.+..+.||.++|.++..+|||.-+
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~S------GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKS------GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEccc------ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence 99999988888643 358999999998 9999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEE
Q 000450 685 ACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWD 705 (1496)
++|+.| .+++||.
T Consensus 331 ~TgSWD--------s~lriW~ 343 (343)
T KOG0286|consen 331 ATGSWD--------STLRIWA 343 (343)
T ss_pred Eecchh--------HheeecC
Confidence 999888 9999994
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=3.9e-24 Score=258.78 Aligned_cols=209 Identities=17% Similarity=0.238 Sum_probs=185.3
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
...++.+|.++|....+.++.. .|+++++|+++++|..+ +..+.-.++||..+|+++.|+|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~r----fLlScSED~svRLWsl~---------------t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRR----FLLSCSEDSSVRLWSLD---------------TWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred eeEEeecCCCceeeeeeccccc----ceeeccCCcceeeeecc---------------cceeEEEecCCCcceeeEEecC
Confidence 3455789999999988444444 89999999999995443 4567778899999999999999
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~ 660 (1496)
. |.++||||.|++-++|......+++.|.+|-+.|.|+.|+|+ .+++++||.|++||+||+.+|.
T Consensus 504 ~---------GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------s~Y~aTGSsD~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 504 R---------GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------SNYVATGSSDRTVRLWDVSTGN 568 (707)
T ss_pred C---------ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc------ccccccCCCCceEEEEEcCCCc
Confidence 6 899999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceE
Q 000450 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1496)
Q Consensus 661 ~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v 740 (1496)
+++.|.||.++|.+++|||+|+||++|+.| |.|.+||+.+|+++..+.||++.+..+.|+.
T Consensus 569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed--------~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~----------- 629 (707)
T KOG0263|consen 569 SVRIFTGHKGPVTALAFSPCGRYLASGDED--------GLIKIWDLANGSLVKQLKGHTGTIYSLSFSR----------- 629 (707)
T ss_pred EEEEecCCCCceEEEEEcCCCceEeecccC--------CcEEEEEcCCCcchhhhhcccCceeEEEEec-----------
Confidence 999999999999999999999999999998 9999999999999999999998888888872
Q ss_pred EcCCccccccceeeccCCcEEeeccccc
Q 000450 741 LNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 741 ~~g~~~~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
.|+..++++. |.+++.|++...
T Consensus 630 -dg~vLasgg~-----DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 630 -DGNVLASGGA-----DNSVRLWDLTKV 651 (707)
T ss_pred -CCCEEEecCC-----CCeEEEEEchhh
Confidence 2444344444 999999997443
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=3.7e-24 Score=235.71 Aligned_cols=145 Identities=24% Similarity=0.350 Sum_probs=125.0
Q ss_pred ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCc
Q 000450 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1496)
Q Consensus 523 f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dgt 602 (1496)
|...++|+++.|.+|++ |+..+.++++++.||+..|.|+.|. +++++|||.|.+
T Consensus 328 fd~kyIVsASgDRTikv---------------W~~st~efvRtl~gHkRGIAClQYr-----------~rlvVSGSSDnt 381 (499)
T KOG0281|consen 328 FDDKYIVSASGDRTIKV---------------WSTSTCEFVRTLNGHKRGIACLQYR-----------DRLVVSGSSDNT 381 (499)
T ss_pred cccceEEEecCCceEEE---------------Eeccceeeehhhhcccccceehhcc-----------CeEEEecCCCce
Confidence 33337889999999999 3456788999999999999999874 799999999999
Q ss_pred EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc---------EEEEecCCCCCcE
Q 000450 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR---------VERMFPGHPNYPA 673 (1496)
Q Consensus 603 V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~---------~l~~~~gH~~~V~ 673 (1496)
|++||+..|.+++.+.+|..-|.++.|.- +.++||+.||+|++||+..+. |+..+..|.+.|.
T Consensus 382 IRlwdi~~G~cLRvLeGHEeLvRciRFd~--------krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 382 IRLWDIECGACLRVLEGHEELVRCIRFDN--------KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred EEEEeccccHHHHHHhchHHhhhheeecC--------ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence 99999999999999999999999999964 489999999999999998653 5666778999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
.+.| |...+++.+.| .+|-|||...+..
T Consensus 454 rLQF--D~fqIvsssHd--------dtILiWdFl~~~~ 481 (499)
T KOG0281|consen 454 RLQF--DEFQIISSSHD--------DTILIWDFLNGPP 481 (499)
T ss_pred EEee--cceEEEeccCC--------CeEEEEEcCCCCc
Confidence 9999 45677777777 8999999977654
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=4.5e-22 Score=212.25 Aligned_cols=161 Identities=17% Similarity=0.320 Sum_probs=135.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
.|++|..+|.|+| ||+-. ..+...+ ..-.-.|.++...|| +..|+.+..-|+..+
T Consensus 138 eLis~dqsg~irv--WDl~~-------------~~c~~~liPe~~~~i~sl~v~~d---------gsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 138 ELISGDQSGNIRV--WDLGE-------------NSCTHELIPEDDTSIQSLTVMPD---------GSMLAAANNKGNCYV 193 (311)
T ss_pred eEEeecCCCcEEE--EEccC-------------CccccccCCCCCcceeeEEEcCC---------CcEEEEecCCccEEE
Confidence 5777777888888 44211 1111111 223356889999997 899999999999999
Q ss_pred EECCCC------ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEc
Q 000450 606 WDLGSG------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 606 WDl~tg------~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~s 678 (1496)
|++-+. +++++|+.|.+.+.++.++|+ +++|+++|.|++++||+.++. +....+.+|...++.++||
T Consensus 194 W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd------~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 194 WRLLNHQTASELEPVHKFQAHNGHILRCLLSPD------VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred EEccCCCccccceEhhheecccceEEEEEECCC------CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 999764 367889999999999999999 899999999999999999988 7778889999999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceee
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~ 725 (1496)
.|+.||++|+.| +.+++||+..++.++.+.||....++.
T Consensus 268 ~dg~YlvTassd--------~~~rlW~~~~~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 268 ADGEYLVTASSD--------HTARLWDLSAGKEVRQYQGHHKAAVCV 306 (311)
T ss_pred cCccEEEecCCC--------CceeecccccCceeeecCCcccccEEE
Confidence 999999999998 999999999999999999999776654
No 24
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=4.3e-21 Score=228.08 Aligned_cols=521 Identities=14% Similarity=0.149 Sum_probs=311.4
Q ss_pred CCceEEEEEEcCCCC---EEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccc
Q 000450 15 PSHRVTATSALTQPP---TLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1496)
Q Consensus 15 psh~Vtava~SpDg~---~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1496)
+..+|+|+.+.|+.+ .+++|+.||+|++|.+.. .....+..+.||...+.|+.-
T Consensus 53 H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~---~~~~~i~~~~g~~~~~~cv~a-------------------- 109 (764)
T KOG1063|consen 53 HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRD---EYLIKIYTIQGHCKECVCVVA-------------------- 109 (764)
T ss_pred CccceEEEEEcccccccceEEEccCCCcEEEEEEee---hheEEEEeecCcceeEEEEEe--------------------
Confidence 456799999999877 899999999999999983 334556677888888888861
Q ss_pred ccccccccCCCCEEEE-EeCCCeEEEEECCCCe--EEEeecCCCCCCCCcEEEEcC-CCCeEEEEcccccccCCcccccc
Q 000450 92 SNVMGKSSLDNGALIS-ACTDGVLCVWSRSSGH--CRRRRKLPPWVGSPSVICTLP-SNPRYVCIGCCFIDTNQLSDHHS 167 (1496)
Q Consensus 92 ~~~~g~~s~d~~~LaS-as~DG~l~VWdv~~G~--ci~~~~l~~~~g~~~~i~~~s-~~~~ll~~G~~~id~~~l~~~~~ 167 (1496)
...+.+ .+.|+++.+||.+..+ |.+.....-..-.|....+.+ ++.-++++|..
T Consensus 110 ----------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs------------ 167 (764)
T KOG1063|consen 110 ----------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS------------ 167 (764)
T ss_pred ----------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc------------
Confidence 111222 3799999999996555 333221110112234444555 33456778765
Q ss_pred cccccccccccccCCCCCCCCccEEEEEECCce--EEEEEEecCccccCCeEEEEEeeccCCCCceeEEEE--eCCCcEE
Q 000450 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGL--TIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMV--DSVGRLQ 243 (1496)
Q Consensus 168 ~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~--~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llva--s~dG~V~ 243 (1496)
++.|.++--.+. +.+..+.. +.|||..++|.- +.+ ++++++ +.|..||
T Consensus 168 ---------------------~~~v~~~s~~~d~f~~v~el~G---H~DWIrsl~f~~--~~~--~~~~laS~SQD~yIR 219 (764)
T KOG1063|consen 168 ---------------------KFVVDLYSSSADSFARVAELEG---HTDWIRSLAFAR--LGG--DDLLLASSSQDRYIR 219 (764)
T ss_pred ---------------------ceEEEEeccCCcceeEEEEeec---cchhhhhhhhhc--cCC--CcEEEEecCCceEEE
Confidence 233444333322 23344443 579999999873 222 234444 9999999
Q ss_pred EEECCCCCccc---cccCCCcccCC--Ccc-cee-------eeccCcccCceEEEEecCCcEEEEEeCC-eEEEEEcCCC
Q 000450 244 LVPISKESHLD---REEGNGLCKSS--SQL-DMA-------ILQNGVVEGGHLVSVATCGNIIALVLKD-HCIFRLLGSG 309 (1496)
Q Consensus 244 lWdl~~~~~~~---~~~~~~l~~~e--k~i-~~v-------~~~~~~~~~~~~va~s~dg~~l~t~~~~-~~~~~l~d~~ 309 (1496)
||.+......+ .+....++.+. ..+ +.+ ....+|..-+..+-..|.+..|++.+.| ..++ |..+
T Consensus 220 iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii--W~pd 297 (764)
T KOG1063|consen 220 IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII--WKPD 297 (764)
T ss_pred EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE--EecC
Confidence 99987542111 00000111111 000 000 1133577778899999999777766555 4566 5544
Q ss_pred cccceeeeecceeEee-CCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCee
Q 000450 310 STIGEICFVDNLFCLE-GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHF 388 (1496)
Q Consensus 310 ~~ige~~~~~~~l~~~-~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~ 388 (1496)
+.-| .+. ..+++. .+.....+-++.+.... ..++-|+..|+.++|+- .....|
T Consensus 298 ~~tG--iWv-~~vRlGe~gg~a~GF~g~lw~~n~----------------~~ii~~g~~Gg~hlWkt-------~d~~~w 351 (764)
T KOG1063|consen 298 ENTG--IWV-DVVRLGEVGGSAGGFWGGLWSPNS----------------NVIIAHGRTGGFHLWKT-------KDKTFW 351 (764)
T ss_pred Cccc--eEE-EEEEeecccccccceeeEEEcCCC----------------CEEEEecccCcEEEEec-------cCccce
Confidence 4111 111 122221 11111124455554321 25666777888888871 111234
Q ss_pred -eecCcCCCCCceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccc
Q 000450 389 -EIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFL 467 (1496)
Q Consensus 389 -~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~ 467 (1496)
..|..++.-++.-.+.+.+.+.|++++.. +.++++++ ..+....
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~-----------DQTTRlFa----------------~wg~q~~-------- 396 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSL-----------DQTTRLFA----------------RWGRQQE-------- 396 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEecc-----------ccceeeec----------------ccccccc--------
Confidence 22333333344556777777888877653 23344432 1110000
Q ss_pred cCCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc---
Q 000450 468 DENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL--- 544 (1496)
Q Consensus 468 ~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~--- 544 (1496)
|.-. ...+-|+-.++|++++.... ++++|.+..-++++....
T Consensus 397 ----------------------wHEi---------aRPQiHGyDl~c~~~vn~~~----~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 397 ----------------------WHEI---------ARPQIHGYDLTCLSFVNEDL----QFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred ----------------------eeee---------cccccccccceeeehccCCc----eeeecccceeeeeecCcHHHH
Confidence 1111 11244556666666555322 566666666566643210
Q ss_pred -----ccc--------------------------------C-C-----------CCCCc--cccC-------CcceEEEE
Q 000450 545 -----FER--------------------------------H-N-----------SPGAS--LKVN-------SHVSRQYF 566 (1496)
Q Consensus 545 -----l~~--------------------------------~-d-----------~~~~~--~d~~-------s~~~~~~l 566 (1496)
+.+ + . .+..+ +..+ .-..++.+
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence 000 0 0 00000 0000 00123457
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC-----CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCE
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-----CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D-----gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
+||...|.|++.+|+ +++++|+... ..|++|+..+......+.+|.-.|+.++|+|| +++
T Consensus 522 YGHGyEv~~l~~s~~---------gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd------g~~ 586 (764)
T KOG1063|consen 522 YGHGYEVYALAISPT---------GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD------GRY 586 (764)
T ss_pred ccCceeEEEEEecCC---------CCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC------CcE
Confidence 899999999999997 8999998754 35899999999888899999999999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCc-EE---EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC--eEEE--
Q 000450 642 FLSVGEDFSVALASLETLR-VE---RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG--ARER-- 713 (1496)
Q Consensus 642 l~Sgs~DgsV~lWdl~~~~-~l---~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg--~~~~-- 713 (1496)
|+++|.|+++.+|...+.. .. .....|..-|+++.|+|++.+++|+++| .+|+||..... +.+.
T Consensus 587 LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD--------K~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD--------KKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC--------ceEEEEeccCchhhhhhhh
Confidence 9999999999999875432 11 2256799999999999999999999999 99999998776 3222
Q ss_pred EEeCCCCCceeeeeec
Q 000450 714 VLRGTASHSMFDHFCK 729 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~ 729 (1496)
....+...++...+++
T Consensus 659 a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 659 ACLKFSLAVTAVAYLP 674 (764)
T ss_pred chhccCCceeeEEeec
Confidence 2334566666666664
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=5.1e-23 Score=249.21 Aligned_cols=223 Identities=22% Similarity=0.317 Sum_probs=188.7
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----cccCC-----------CCCCccccCCcceEE
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----FERHN-----------SPGASLKVNSHVSRQ 564 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~-----l~~~d-----------~~~~~~d~~s~~~~~ 564 (1496)
+..++..-...++|..+.++.. .+|+|+.|..|++|.+.. +...+ ......|..+....+
T Consensus 370 c~YT~~nt~~~v~ca~fSddss----mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSS----MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcc----hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 3344444456788888666666 999999999999987651 11110 011223334445567
Q ss_pred EEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEE
Q 000450 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1496)
Q Consensus 565 ~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~S 644 (1496)
++.||+++|....|+|+ .++|+|+|.|++||+|.+.+..++..+++|..||+.+.|+|. |.+|||
T Consensus 446 ~L~GH~GPVyg~sFsPd---------~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~------GyYFat 510 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPD---------RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR------GYYFAT 510 (707)
T ss_pred EeecCCCceeeeeeccc---------ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC------ceEEEe
Confidence 79999999999999998 899999999999999999999999999999999999999998 999999
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCcee
Q 000450 645 VGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1496)
Q Consensus 645 gs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~ 724 (1496)
+|.|++.++|.....++++.|.||-+.|.|+.|+|+..|+++|+.| .+||+||+.+|..+|.+.||.+.++.
T Consensus 511 as~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD--------~tVRlWDv~~G~~VRiF~GH~~~V~a 582 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD--------RTVRLWDVSTGNSVRIFTGHKGPVTA 582 (707)
T ss_pred cCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC--------ceEEEEEcCCCcEEEEecCCCCceEE
Confidence 9999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred eeeecccccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 725 DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 725 ~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
+.|++ +|.+.+++.- |+.|++|++.+
T Consensus 583 l~~Sp------------~Gr~LaSg~e-----d~~I~iWDl~~ 608 (707)
T KOG0263|consen 583 LAFSP------------CGRYLASGDE-----DGLIKIWDLAN 608 (707)
T ss_pred EEEcC------------CCceEeeccc-----CCcEEEEEcCC
Confidence 98882 2555555544 99999999854
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.89 E-value=5.8e-22 Score=214.94 Aligned_cols=277 Identities=17% Similarity=0.163 Sum_probs=206.7
Q ss_pred eecccccCccccccccC-CCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVD-SRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~-~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
+...+.+..+-+|++.. ....|.....+.+|...|+.+.+.++.. +.++|+.||.+++ ||
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~----~alS~swD~~lrl---------------WD 91 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN----FALSASWDGTLRL---------------WD 91 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc----eEEeccccceEEE---------------EE
Confidence 33445555666676543 3344566777899999999999888887 8999999999999 34
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc--CCCEEEEEECCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQT 634 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H--~~~V~~l~~sPd~~ 634 (1496)
..++++.+.|.||+..|.+++|++| ++.++|||.|.+|++||+. |.+..++..+ .+.|.++.|+|..
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~d---------n~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~- 160 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTD---------NRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNE- 160 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCC---------CceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCC-
Confidence 5677889999999999999999998 7999999999999999986 5666666554 6889999999983
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
...+|+++|.|++|++||+++.+...++.||...++.+.+||||...++|+.| |.+.+||+..++.+..
T Consensus 161 ---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd--------g~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 161 ---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD--------GEAMLWDLNEGKNLYS 229 (315)
T ss_pred ---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC--------ceEEEEEccCCceeEe
Confidence 24599999999999999999999999999999999999999999999999998 9999999999999777
Q ss_pred EeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccccccccccCCCCCccccccCCCCCCC
Q 000450 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPS 794 (1496)
Q Consensus 715 l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~~~~p~~~~~~~~~~~~~~ 794 (1496)
+. |...+-...|.| ....+....+..||+|++....- ++.-+.+..
T Consensus 230 l~-a~~~v~sl~fsp------------------nrywL~~at~~sIkIwdl~~~~~--------------v~~l~~d~~- 275 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSP------------------NRYWLCAATATSIKIWDLESKAV--------------VEELKLDGI- 275 (315)
T ss_pred cc-CCCeEeeEEecC------------------CceeEeeccCCceEEEeccchhh--------------hhhcccccc-
Confidence 64 443444443432 22334445577799999732111 110010000
Q ss_pred CCCccccccccccccccCCCCcceEEEechhhhcccc
Q 000450 795 LNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPY 831 (1496)
Q Consensus 795 ~~~p~~~~~~~~~~~~~~~~~~~~~l~fd~e~l~~~~ 831 (1496)
.|........-+-+.|+..|.+.+.-+-.+.|+..
T Consensus 276 --g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 276 --GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred --ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 00000001112345688899999988887776543
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=3.3e-21 Score=210.86 Aligned_cols=140 Identities=20% Similarity=0.326 Sum_probs=119.8
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEE
Q 000450 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1496)
Q Consensus 528 lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWD 607 (1496)
+++|.-|+.|++ |+ ........++.||.+.|+.+..+|+ +..+.|-++|.++++||
T Consensus 189 v~sggIdn~ikv--Wd-------------~r~~d~~~~lsGh~DtIt~lsls~~---------gs~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 189 VISGGIDNDIKV--WD-------------LRKNDGLYTLSGHADTITGLSLSRY---------GSFLLSNSMDNTVRVWD 244 (338)
T ss_pred eeeccccCceee--ec-------------cccCcceEEeecccCceeeEEeccC---------CCccccccccceEEEEE
Confidence 556677888888 44 3334667889999999999999997 89999999999999999
Q ss_pred CCCC----ceEEEEcccCC----CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000450 608 LGSG----NLITVMHHHVA----PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 608 l~tg----~~l~~~~~H~~----~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp 679 (1496)
++.. .++..|.+|.- -...+.|+|+ +..+..|+.|+.+.+||....+.+..++||.+.|.++.|+|
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~------~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN------GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhcceeeccCC------CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC
Confidence 9843 45788877643 2456789998 88999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 680 dg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
...+|.+++.| .+|++=+
T Consensus 319 ~e~iils~~sd--------k~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSD--------KTIYLGE 336 (338)
T ss_pred CCcEEEEeccC--------ceeEeec
Confidence 99999999998 8998743
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=1.2e-23 Score=231.64 Aligned_cols=221 Identities=24% Similarity=0.262 Sum_probs=189.7
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++.....+.++++||...- .+...+.||.+.|.|+. |....+++|++|.+|+||+
T Consensus 209 kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLq------yd~rviisGSSDsTvrvWD--------------- 263 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQ------YDERVIVSGSSDSTVRVWD--------------- 263 (499)
T ss_pred hhhcccccCceEEeccccH----HHHHhhhcCCCcEEeee------ccceEEEecCCCceEEEEe---------------
Confidence 5677788999999997653 56677899999999987 5555899999999999944
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---eEEEEcccCCCEEEEEECCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQ 633 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---~l~~~~~H~~~V~~l~~sPd~ 633 (1496)
+++++++.++.+|...|..+.|+ +.+++++|.|.++.+||+.+.. +.+.+.+|...|+.+.|+
T Consensus 264 v~tge~l~tlihHceaVLhlrf~-----------ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--- 329 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFS-----------NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--- 329 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEe-----------CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---
Confidence 44788999999999999999997 5789999999999999998765 447788999999999996
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 634 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 634 ~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
.++++|++.|.+|++|++.++++++++.||...|.|+.+. |+++++|+.| .+|++||++.|.++|
T Consensus 330 -----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSD--------ntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 330 -----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD--------NTIRLWDIECGACLR 394 (499)
T ss_pred -----cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCC--------ceEEEEeccccHHHH
Confidence 4599999999999999999999999999999999888874 7899998888 999999999999999
Q ss_pred EEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccc
Q 000450 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~ 770 (1496)
++.||..-+-++.|.++ -.+++.. ||++|+|+++..++
T Consensus 395 vLeGHEeLvRciRFd~k--------------rIVSGaY-----DGkikvWdl~aald 432 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFDNK--------------RIVSGAY-----DGKIKVWDLQAALD 432 (499)
T ss_pred HHhchHHhhhheeecCc--------------eeeeccc-----cceEEEEecccccC
Confidence 99999998888888732 1122233 99999999976554
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=3.8e-20 Score=209.05 Aligned_cols=141 Identities=26% Similarity=0.401 Sum_probs=123.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++++.||.+.+ |+ ..+++....+..|...|.++.|+|+ ++.+++++.|+.|++|
T Consensus 149 ~l~~~~~~~~i~i--~d-------------~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 149 FVASSSQDGTIKL--WD-------------LRTGKCVATLTGHTGEVNSVAFSPD---------GEKLLSSSSDGTIKLW 204 (289)
T ss_pred EEEEEcCCCcEEE--EE-------------ccccccceeEecCccccceEEECCC---------cCEEEEecCCCcEEEE
Confidence 3555556888888 33 2234556677789999999999997 7788888889999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~t 686 (1496)
|+.+++.+..+..|..+|.++.|+|+ +..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++
T Consensus 205 d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 205 DLSTGKCLGTLRGHENGVNSVAFSPD------GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred ECCCCceecchhhcCCceEEEEEcCC------CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 99999999999899999999999998 788999888999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEE
Q 000450 687 LCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 687 gs~D~sg~~D~dg~V~VWD 705 (1496)
++.| +.|++||
T Consensus 279 ~~~d--------~~i~iw~ 289 (289)
T cd00200 279 GSAD--------GTIRIWD 289 (289)
T ss_pred ecCC--------CeEEecC
Confidence 9998 9999996
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.3e-22 Score=233.33 Aligned_cols=231 Identities=20% Similarity=0.245 Sum_probs=193.2
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
.++..+|.+.+|+..+- .+...+.-...+|++..++.-.. .+++|+.|+.|+|++++
T Consensus 29 la~LynG~V~IWnyetq----tmVksfeV~~~PvRa~kfiaRkn----Wiv~GsDD~~IrVfnyn--------------- 85 (794)
T KOG0276|consen 29 LAALYNGDVQIWNYETQ----TMVKSFEVSEVPVRAAKFIARKN----WIVTGSDDMQIRVFNYN--------------- 85 (794)
T ss_pred EEeeecCeeEEEecccc----eeeeeeeecccchhhheeeeccc----eEEEecCCceEEEEecc---------------
Confidence 34556788999998763 34455555566777776555444 89999999999997766
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC-CceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t-g~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
+++.+..|..|.+.|.|++.||. ..+++|+|+|-+|++||-+. ..+.++|.+|...|.+++|+|..
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt---------~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD---- 152 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPT---------LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD---- 152 (794)
T ss_pred cceeeEEeeccccceeeeeecCC---------CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC----
Confidence 45678899999999999999997 78999999999999999875 46789999999999999999984
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC--CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp--dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+.|+|+|-|++|++|++....+..++.||...|++|.+-+ |..||++|+.| .+|+|||..|.+|++++
T Consensus 153 -~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD--------~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 153 -PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD--------LTIKVWDYQTKSCVQTL 223 (794)
T ss_pred -ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC--------ceEEEeecchHHHHHHh
Confidence 78999999999999999999999999999999999999976 44699999988 99999999999999999
Q ss_pred eCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccccc
Q 000450 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771 (1496)
Q Consensus 716 ~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~ 771 (1496)
.||+..+-.+.|.+++. ++++| ++||++|+||...+...
T Consensus 224 eGHt~Nvs~v~fhp~lp------iiisg-----------sEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 224 EGHTNNVSFVFFHPELP------IIISG-----------SEDGTVRIWNSKTYKLE 262 (794)
T ss_pred hcccccceEEEecCCCc------EEEEe-----------cCCccEEEecCcceehh
Confidence 99998888877776533 22333 45999999997665543
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=3e-20 Score=207.89 Aligned_cols=159 Identities=17% Similarity=0.134 Sum_probs=127.4
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
.++..|-+++.+|+-+++|||+.|..-.||++.+ ++ ....+.||..+|+|+.
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~---ge--~~~eltgHKDSVt~~~----------------------- 113 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST---GE--FAGELTGHKDSVTCCS----------------------- 113 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccC---Cc--ceeEecCCCCceEEEE-----------------------
Confidence 4667899999999999999999999999999985 43 5677899999999998
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEE--EcCCCCeEEEEcccccccCCcccccccccc
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVIC--TLPSNPRYVCIGCCFIDTNQLSDHHSFESV 171 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~--~~s~~~~ll~~G~~~id~~~l~~~~~~~~v 171 (1496)
|+.|+.|||||.-+|.|+||.+.+|.......-+ ...|. ..+|.++.+..|+.
T Consensus 114 ----FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-----~~dieWl~WHp~a~illAG~~---------------- 168 (399)
T KOG0296|consen 114 ----FSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-----VEDIEWLKWHPRAHILLAGST---------------- 168 (399)
T ss_pred ----EccCceEEEecCCCccEEEEEcccCceEEEeecc-----cCceEEEEecccccEEEeecC----------------
Confidence 6899999999999999999999999866543212 22333 55578888888876
Q ss_pred cccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCC
Q 000450 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKE 250 (1496)
Q Consensus 172 ~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~ 250 (1496)
++.+++|...+....+.+.. +.++ +++-.|. |||++ ++.+..||+|++|++.+.
T Consensus 169 -----------------DGsvWmw~ip~~~~~kv~~G-h~~~--ct~G~f~---pdGKr--~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 169 -----------------DGSVWMWQIPSQALCKVMSG-HNSP--CTCGEFI---PDGKR--ILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred -----------------CCcEEEEECCCcceeeEecC-CCCC--ccccccc---CCCce--EEEEecCceEEEEecCCC
Confidence 38999999988755555544 5555 7777888 56664 777788999999998665
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.6e-21 Score=217.67 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=195.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-------------
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL------------- 544 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~------------- 544 (1496)
++..+.+.++++||..+. ++...+++|...|..+++..... .+++++.|=.+.+|.++.
T Consensus 123 v~~as~d~tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk----~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 123 VVSASEDATIKVFDTETG----ELERSLRGHTDSVFDISFDASGK----YLATCSSDLSAKLWDFDTFFRCIKSLIGHEH 194 (406)
T ss_pred EEEecCCceEEEEEccch----hhhhhhhccccceeEEEEecCcc----EEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence 345557889999999884 66778899999999998776665 899999998888865432
Q ss_pred -------------cccC--CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC
Q 000450 545 -------------FERH--NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG 609 (1496)
Q Consensus 545 -------------l~~~--d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~ 609 (1496)
+... |...+.|+..++-++.++.+|...|..++.+.| +.+++|++.|.+|++|-+.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D---------Gti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD---------GTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC---------eeEEEecCCCceEEEEEec
Confidence 0111 345678999999999999999999999999887 8999999999999999999
Q ss_pred CCceEEEEcccCCCEEEEEECCCCCCC------C---CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000450 610 SGNLITVMHHHVAPVRQIILSPPQTEH------P---WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1496)
Q Consensus 610 tg~~l~~~~~H~~~V~~l~~sPd~~~~------~---~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd 680 (1496)
++++...++.|.-+|.+++|.|+.... + -++++.+++.|++|++||+.+++|+.++.||.+.|..++|+|.
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC
Confidence 999999999999999999999874321 1 2469999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 681 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 681 g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
|+||+++..| ++++|||++++++..++..|..-+..+.|.
T Consensus 346 Gkyi~ScaDD--------ktlrvwdl~~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 346 GKYILSCADD--------KTLRVWDLKNLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred CeEEEEEecC--------CcEEEEEeccceeeeccCCCcceeEEEecC
Confidence 9999998888 999999999999999999999766666555
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=2.6e-19 Score=237.31 Aligned_cols=141 Identities=14% Similarity=0.197 Sum_probs=117.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCc-ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~-~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
.+++|+.||.|++|+.. +. .+...+.+|...|+++.|.+ +..|++|+.|++|++
T Consensus 632 ~latgs~dg~I~iwD~~---------------~~~~~~~~~~~h~~~V~~v~f~~----------~~~lvs~s~D~~iki 686 (793)
T PLN00181 632 SLAFGSADHKVYYYDLR---------------NPKLPLCTMIGHSKTVSYVRFVD----------SSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEEEeCCCeEEEEECC---------------CCCccceEecCCCCCEEEEEEeC----------CCEEEEEECCCEEEE
Confidence 57888999999994332 11 24567789999999999973 688999999999999
Q ss_pred EECCC------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-------------c
Q 000450 606 WDLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-------------P 666 (1496)
Q Consensus 606 WDl~t------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-------------~ 666 (1496)
||+.. +.+++.+.+|...+..+.|+|+ +.+|++|+.|+.|++|+......+..+ .
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~ 760 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVS------DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVD 760 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCC------CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccC
Confidence 99974 3578899999999999999998 889999999999999998765443222 2
Q ss_pred CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 667 gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.|...|.+++|+|++.+|++|+.| |.|+|||+
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~d--------G~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANST--------GNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCC--------CcEEEEec
Confidence 345579999999999999999998 99999997
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=233.33 Aligned_cols=233 Identities=18% Similarity=0.258 Sum_probs=194.9
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
++.+..++++++|+...... .+...+.+|...|+.+++.++.. .+++|+.|++|+| |+. .
T Consensus 174 l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~----~l~s~s~D~tiri--wd~------------~ 233 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGS----YLLSGSDDKTLRI--WDL------------K 233 (456)
T ss_pred EEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCc----EEEEecCCceEEE--eec------------c
Confidence 55666778899999855432 34555689999999999666665 8999999999999 441 1
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
..+..++++.||...|++++|+|+ +++++||+.|++|++||++++++...+.+|.++|..++|+++
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~---------g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d----- 299 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPD---------GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD----- 299 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCC---------CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC-----
Confidence 345788999999999999999998 799999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc--EEEEecCCCCC--cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLR--VERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~--~l~~~~gH~~~--V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
++.+++++.|+.|++||+.+++ ++..+.++... ++.++|+|+++++++++.| +.+++||+..+...+
T Consensus 300 -~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d--------~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 300 -GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD--------RTLKLWDLRSGKSVG 370 (456)
T ss_pred -CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC--------CeEEEEEccCCccee
Confidence 9999999999999999999999 67888888776 8999999999999999998 999999999999999
Q ss_pred EEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
.+.+|.... ...|.... ......++..+.|+.+.+|++..
T Consensus 371 ~~~~~~~~~-~~~~~~~~-------------~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 371 TYTGHSNLV-RCIFSPTL-------------STGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred eecccCCcc-eeEecccc-------------cCCCCeEEEEeCCceEEEEeCCc
Confidence 999999763 22233111 11223345566699999999754
No 35
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=3.7e-20 Score=229.75 Aligned_cols=150 Identities=26% Similarity=0.460 Sum_probs=131.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++|+.||.|.| | +..+++++.++.||+++|.++.+.. ...+++|+.|++|++|
T Consensus 343 ~lvsgs~d~~v~V--W-------------~~~~~~cl~sl~gH~~~V~sl~~~~----------~~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 343 LLVSGSYDGTVKV--W-------------DPRTGKCLKSLSGHTGRVYSLIVDS----------ENRLLSGSLDTTIKVW 397 (537)
T ss_pred EEEEEecCceEEE--E-------------EhhhceeeeeecCCcceEEEEEecC----------cceEEeeeeccceEee
Confidence 6899999999999 3 3557899999999999999997753 2789999999999999
Q ss_pred ECCCC-ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC-CCCCcEEEEEcCCCCEE
Q 000450 607 DLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG-HPNYPAKVVWDCPRGYI 684 (1496)
Q Consensus 607 Dl~tg-~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g-H~~~V~~V~~spdg~~L 684 (1496)
|++++ ++++++.+|..-|..+.+. ++++++++.|++|++||..++++++.+.+ |...|..+++. ...+
T Consensus 398 dl~~~~~c~~tl~~h~~~v~~l~~~--------~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 398 DLRTKRKCIHTLQGHTSLVSSLLLR--------DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEI 467 (537)
T ss_pred cCCchhhhhhhhcCCcccccccccc--------cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceE
Confidence 99999 9999999999999777664 56999999999999999999999999998 67888888886 4678
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
++++.| +++++||++++++.+.+-.+.
T Consensus 468 l~s~~~--------~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 468 LCSSDD--------GSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred EEEecC--------CeeEEEecccCchhhhhhhcc
Confidence 888888 999999999999988774333
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.86 E-value=1.2e-21 Score=221.25 Aligned_cols=237 Identities=15% Similarity=0.082 Sum_probs=192.5
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++.+.+.+|-+.+|+... -..-..++.|...|+++.+.++.. .+++|..+|.|++ |+.-
T Consensus 110 RLltgs~SGEFtLWNg~~----fnFEtilQaHDs~Vr~m~ws~~g~----wmiSgD~gG~iKy--Wqpn----------- 168 (464)
T KOG0284|consen 110 RLLTGSQSGEFTLWNGTS----FNFETILQAHDSPVRTMKWSHNGT----WMISGDKGGMIKY--WQPN----------- 168 (464)
T ss_pred eeEeecccccEEEecCce----eeHHHHhhhhcccceeEEEccCCC----EEEEcCCCceEEe--cccc-----------
Confidence 466777778888898632 122233589999999999777776 9999999999999 5521
Q ss_pred cCCcceEEEEecCC-ccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 557 VNSHVSRQYFLGHT-GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~-~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
. ..++.+++|. ..|++++|+|. +..++|+|.|++|+|||....+....+.+|.-.|.+++|+|.
T Consensus 169 m---nnVk~~~ahh~eaIRdlafSpn---------DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~--- 233 (464)
T KOG0284|consen 169 M---NNVKIIQAHHAEAIRDLAFSPN---------DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT--- 233 (464)
T ss_pred h---hhhHHhhHhhhhhhheeccCCC---------CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc---
Confidence 1 2244455655 89999999997 789999999999999999999988999999999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
...++|+|.|..|++||.++++|+.++.+|...|..+.|+|++++|++++.| ..++++|+++.+.++++
T Consensus 234 ---kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD--------~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 234 ---KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD--------QSCKVFDIRTMKELFTY 302 (464)
T ss_pred ---cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC--------ceEEEEehhHhHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred eCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccccc
Q 000450 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFST 776 (1496)
Q Consensus 716 ~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~ 776 (1496)
+||...++.+.+.+- ..++...|. .|+.+..|.+-..+.-.....
T Consensus 303 r~Hkkdv~~~~WhP~-----~~~lftsgg-----------~Dgsvvh~~v~~~~p~~~i~~ 347 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPL-----NESLFTSGG-----------SDGSVVHWVVGLEEPLGEIPP 347 (464)
T ss_pred hcchhhheeeccccc-----cccceeecc-----------CCCceEEEeccccccccCCCc
Confidence 999999988865531 112222222 378888887754443333333
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.85 E-value=9.9e-21 Score=210.20 Aligned_cols=210 Identities=18% Similarity=0.206 Sum_probs=182.7
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
++...+.+|.+-|.|+++-+.+. .+++|+.|++|+| ||..+++...++.||...|..++++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~----wf~tgs~DrtikI---------------wDlatg~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNE----WFATGSADRTIKI---------------WDLATGQLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred eehhhhhhccceEEEEeeCCCce----eEEecCCCceeEE---------------EEcccCeEEEeecchhheeeeeeec
Confidence 45556789999999999666554 8999999999999 4467889999999999999999999
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~ 659 (1496)
+. ..+|++++.|+.|++||++..+.++.+.+|-..|.+++..|. -+.+++|+.|.++++||+++.
T Consensus 203 ~r---------HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT------ldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 203 KR---------HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT------LDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred cc---------CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc------ceeEEecCCcceEEEeeeccc
Confidence 86 689999999999999999999999999999999999999998 789999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccce
Q 000450 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739 (1496)
Q Consensus 660 ~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~ 739 (1496)
..+..+.||..+|..|.+.|.+..+++|+.| ++|++||++.|+...++..|...+.+....+
T Consensus 268 ~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D--------~tvrlWDl~agkt~~tlt~hkksvral~lhP---------- 329 (460)
T KOG0285|consen 268 ASVHVLSGHTNPVASVMCQPTDPQVITGSHD--------STVRLWDLRAGKTMITLTHHKKSVRALCLHP---------- 329 (460)
T ss_pred ceEEEecCCCCcceeEEeecCCCceEEecCC--------ceEEEeeeccCceeEeeecccceeeEEecCC----------
Confidence 9999999999999999999999999999999 9999999999999999999997776653332
Q ss_pred EEcCCccccccceeeccCCcEEeecccccc
Q 000450 740 VLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 740 v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
...+|..+.-+.|++|.+...+
T Consensus 330 --------~e~~fASas~dnik~w~~p~g~ 351 (460)
T KOG0285|consen 330 --------KENLFASASPDNIKQWKLPEGE 351 (460)
T ss_pred --------chhhhhccCCccceeccCCccc
Confidence 1122333334579999874433
No 38
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.1e-20 Score=207.04 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=75.7
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
.++..|--+.||++|++|||++.|.+..+|++.. ....+...++.||..+|..+.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~--d~~~kl~~tlvgh~~~V~yi~----------------------- 276 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY--DVHFKLKKTLVGHSQPVSYIM----------------------- 276 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec--CcceeeeeeeecccCceEEEE-----------------------
Confidence 3456799999999999999999999999999975 455778899999999999998
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRR 126 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~ 126 (1496)
+|||..||++++.|-.+.+||+.+|.++.
T Consensus 277 ----wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 277 ----WSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred ----ECCCCCeEEecCchHheeeccCCcchhhh
Confidence 79999999999999999999999998774
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.7e-20 Score=198.72 Aligned_cols=232 Identities=18% Similarity=0.177 Sum_probs=196.8
Q ss_pred cccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000450 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1496)
Q Consensus 480 ~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1496)
+...+.++++|+... +.++.++.+|...|...+..+++. .+++|+.|..+.+ ||+.+
T Consensus 34 tcGsdrtvrLWNp~r----g~liktYsghG~EVlD~~~s~Dns----kf~s~GgDk~v~v---------------wDV~T 90 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLR----GALIKTYSGHGHEVLDAALSSDNS----KFASCGGDKAVQV---------------WDVNT 90 (307)
T ss_pred EcCCCceEEeecccc----cceeeeecCCCceeeecccccccc----ccccCCCCceEEE---------------EEccc
Confidence 444677899999665 578899999999999988888877 8999999999998 55788
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC--CceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t--g~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
|+..+.+.||.+.|+.+.|+.+ ...++|||.|.++++||.++ .++++.+......|.++.++
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNee---------sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~------- 154 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEE---------SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA------- 154 (307)
T ss_pred CeeeeecccccceeeEEEecCc---------ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-------
Confidence 9999999999999999999986 78999999999999999875 56889998889999999986
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
++.++.|+.||+++.||++.|+....+-|| +|++++|++|++..+.++.| +++++-|-+||+++..+.|
T Consensus 155 -~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~--------stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLD--------STLRLLDKETGKLLKSYKG 223 (307)
T ss_pred -ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeecc--------ceeeecccchhHHHHHhcc
Confidence 458999999999999999999876665554 69999999999999999999 9999999999999999999
Q ss_pred CCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccccc
Q 000450 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFST 776 (1496)
Q Consensus 718 h~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~ 776 (1496)
|.........| .+... .+++.-++||.+..|+|.......+.+.
T Consensus 224 hkn~eykldc~----l~qsd-----------thV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 224 HKNMEYKLDCC----LNQSD-----------THVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred cccceeeeeee----ecccc-----------eeEEeccCCceEEEEEeccceeeeeecc
Confidence 99999988777 22111 2334555699999999866555444444
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=6e-20 Score=196.17 Aligned_cols=229 Identities=18% Similarity=0.208 Sum_probs=183.5
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.+++.+.+-+|++|+... |.+..+++.....|+++.+.++.. .|+.|+ .-.|++++..
T Consensus 12 iLvsA~YDhTIRfWqa~t----G~C~rTiqh~dsqVNrLeiTpdk~----~LAaa~-~qhvRlyD~~------------- 69 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALT----GICSRTIQHPDSQVNRLEITPDKK----DLAAAG-NQHVRLYDLN------------- 69 (311)
T ss_pred EEEeccCcceeeeeehhc----CeEEEEEecCccceeeEEEcCCcc----hhhhcc-CCeeEEEEcc-------------
Confidence 356777889999999877 467778887778899999777776 566554 6788884433
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
..+..++.++.+|+.-|+++.|..+ ++++.+||.||+++|||++...+.+.|. |..+|++|..+|+
T Consensus 70 S~np~Pv~t~e~h~kNVtaVgF~~d---------grWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn---- 135 (311)
T KOG0315|consen 70 SNNPNPVATFEGHTKNVTAVGFQCD---------GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN---- 135 (311)
T ss_pred CCCCCceeEEeccCCceEEEEEeec---------CeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC----
Confidence 2233578999999999999999987 9999999999999999999977666664 6699999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-------------------------------------------------cEEEEecC
Q 000450 637 PWSDCFLSVGEDFSVALASLETL-------------------------------------------------RVERMFPG 667 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~-------------------------------------------------~~l~~~~g 667 (1496)
+.-|++|..+|.|++||+.+. +++..|+.
T Consensus 136 --QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 136 --QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred --cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 677888888888888888642 24455678
Q ss_pred CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeecccccccccceEEcCCcc
Q 000450 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTS 746 (1496)
Q Consensus 668 H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~ 746 (1496)
|.+.+..+.+|||++||++++.| .+++||+.++. +++..++||+.-+.-..|. .. |.
T Consensus 214 h~~~il~C~lSPd~k~lat~ssd--------ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS------~d------g~-- 271 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSD--------KTVKIWNTDDFFKLELVLTGHQRWVWDCAFS------AD------GE-- 271 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCC--------ceEEEEecCCceeeEEEeecCCceEEeeeec------cC------cc--
Confidence 88999999999999999999999 99999999998 8899999999777766565 12 22
Q ss_pred ccccceeeccCCcEEeeccccc
Q 000450 747 VSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 747 ~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
.++....|...|.|++...
T Consensus 272 ---YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 272 ---YLVTASSDHTARLWDLSAG 290 (311)
T ss_pred ---EEEecCCCCceeecccccC
Confidence 2444555899999987443
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=209.42 Aligned_cols=224 Identities=17% Similarity=0.241 Sum_probs=192.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+++.+.++++||+.. +++..++.+|-..|..+++..-.. ++.++++|+.|+. || .
T Consensus 166 f~tgs~DrtikIwDlat----g~LkltltGhi~~vr~vavS~rHp----YlFs~gedk~VKC--wD-------------L 222 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLAT----GQLKLTLTGHIETVRGVAVSKRHP----YLFSAGEDKQVKC--WD-------------L 222 (460)
T ss_pred EEecCCCceeEEEEccc----CeEEEeecchhheeeeeeecccCc----eEEEecCCCeeEE--Ee-------------c
Confidence 55667788999999987 588889999999999998555333 8999999999999 43 4
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
+..+.++.+.||-..|.||+.+|. -+.|++|+.|.++++||+++...++++.+|..+|.+|.+.|-
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPT---------ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~----- 288 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPT---------LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT----- 288 (460)
T ss_pred hhhhhHHHhccccceeEEEecccc---------ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC-----
Confidence 455788899999999999999997 689999999999999999999999999999999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
...+++||.|++|++||++.|+...++..|...|.+++.+|....++++|.| .|+-|++..|+.+..+.|
T Consensus 289 -dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d---------nik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 289 -DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD---------NIKQWKLPEGEFLQNLSG 358 (460)
T ss_pred -CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc---------cceeccCCccchhhcccc
Confidence 6789999999999999999999999999999999999999999999998887 799999999999999999
Q ss_pred CCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 718 h~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
|.+-+...... .+|+++.|.. .+.+-.|+-+
T Consensus 359 h~~iintl~~n-------sD~v~~~G~d-----------ng~~~fwdwk 389 (460)
T KOG0285|consen 359 HNAIINTLSVN-------SDGVLVSGGD-----------NGSIMFWDWK 389 (460)
T ss_pred ccceeeeeeec-------cCceEEEcCC-----------ceEEEEEecC
Confidence 99755554221 2445544443 6677788753
No 42
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=2.6e-18 Score=208.10 Aligned_cols=475 Identities=13% Similarity=0.129 Sum_probs=292.2
Q ss_pred EEEEEEcCCC--CEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccc
Q 000450 19 VTATSALTQP--PTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1496)
Q Consensus 19 Vtava~SpDg--~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g 96 (1496)
||++. .|+- .-|+.|+.+|.+.|||+.+ .+.+..+.++...||++.
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt-----~K~v~~f~~~~s~IT~ie-------------------------- 209 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRT-----GKVVYTFQEFFSRITAIE-------------------------- 209 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEecc-----CcEEEEecccccceeEec--------------------------
Confidence 55553 3442 4567899999999999996 467888999999999997
Q ss_pred cccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCC-eEEEEcccccccCCcccccccccccccc
Q 000450 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP-RYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1496)
Q Consensus 97 ~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~-~ll~~G~~~id~~~l~~~~~~~~v~~~~ 175 (1496)
-+|-=..+|-|..||+|.+.|+..++.+...+.+ | |..+ -+.|..|| -++++|+.
T Consensus 210 -qsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~-g~Vt-slSFrtDG~p~las~~~-------------------- 265 (910)
T KOG1539|consen 210 -QSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-W-GRVT-SLSFRTDGNPLLASGRS-------------------- 265 (910)
T ss_pred -cCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-c-ccee-EEEeccCCCeeEEeccC--------------------
Confidence 3455667999999999999999999999887765 2 2233 34555555 56777765
Q ss_pred cccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEE-eCCCcEEEEECCCCCccc
Q 000450 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMV-DSVGRLQLVPISKESHLD 254 (1496)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llva-s~dG~V~lWdl~~~~~~~ 254 (1496)
++.+.+||...-++...+...+ -+.+....|.+. +-++++ +.|+.+++|-.+.+.
T Consensus 266 -------------~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~------epVl~ta~~DnSlk~~vfD~~d--- 321 (910)
T KOG1539|consen 266 -------------NGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPG------EPVLVTAGADNSLKVWVFDSGD--- 321 (910)
T ss_pred -------------CceEEEEEcCCCeeeeeeeccc--cCCcccceecCC------CceEeeccCCCceeEEEeeCCC---
Confidence 4789999998877666555322 223555665533 235665 999999999988552
Q ss_pred cccCCCcccCCCccceeeeccCcccCceEEEEe-cCCcEEEEEeCCeEEEEEcCCCc--ccceeee---ec--ceeEee-
Q 000450 255 REEGNGLCKSSSQLDMAILQNGVVEGGHLVSVA-TCGNIIALVLKDHCIFRLLGSGS--TIGEICF---VD--NLFCLE- 325 (1496)
Q Consensus 255 ~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s-~dg~~l~t~~~~~~~~~l~d~~~--~ige~~~---~~--~~l~~~- 325 (1496)
+ .++ .+ +...+|++.-.++.|- .+|..+++...++ .+|.+.... .-++... +. ..+...
T Consensus 322 g--~pR------~L---R~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr-t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 322 G--VPR------LL---RSRGGHSAPPSCIRFYGSQGHFILSAKQDR-TLRSFSVISESQSQELGQLHNKKRAKKVNVFS 389 (910)
T ss_pred C--cch------he---eeccCCCCCchheeeeccCcEEEEecccCc-chhhhhhhHHHHhHhhcccccccccccccccc
Confidence 1 111 22 3456677777888876 5588888877776 344444321 1111100 00 000000
Q ss_pred CCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEE
Q 000450 326 GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHF 405 (1496)
Q Consensus 326 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f 405 (1496)
...-..+.+..+..+. +. ....++.+...-.+-.++.|+ +.+...+.-.+ +..+..+++
T Consensus 390 ~~~~k~p~i~~fa~~~--~R--------E~~W~Nv~~~h~~~~~~~tW~--~~n~~~G~~~L---~~~~~~~~~------ 448 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFEN--AR--------EKEWDNVITAHKGKRSAYTWN--FRNKTSGRHVL---DPKRFKKDD------ 448 (910)
T ss_pred hhhhcCCcceeeeccc--ch--------hhhhcceeEEecCcceEEEEe--ccCcccccEEe---cCccccccC------
Confidence 0000001111111100 00 000011222211222233332 22222221110 000000000
Q ss_pred eecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccC
Q 000450 406 IQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQD 485 (1496)
Q Consensus 406 ~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~ 485 (1496)
....+ +. .+-|++| -+ +....|
T Consensus 449 ----~~~~a-----------------v~-vs~CGNF-------~~-----------------------------IG~S~G 470 (910)
T KOG1539|consen 449 ----INATA-----------------VC-VSFCGNF-------VF-----------------------------IGYSKG 470 (910)
T ss_pred ----cceEE-----------------EE-EeccCce-------EE-----------------------------EeccCC
Confidence 00000 10 0123332 01 122233
Q ss_pred ccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE
Q 000450 486 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY 565 (1496)
Q Consensus 486 ~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~ 565 (1496)
.|..++...+.+++..-+ -..|...|+.+++-.-+. .+++++.+|.+..|.+. ....+..
T Consensus 471 ~Id~fNmQSGi~r~sf~~-~~ah~~~V~gla~D~~n~----~~vsa~~~Gilkfw~f~---------------~k~l~~~ 530 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGD-SPAHKGEVTGLAVDGTNR----LLVSAGADGILKFWDFK---------------KKVLKKS 530 (910)
T ss_pred eEEEEEcccCeeeccccc-CccccCceeEEEecCCCc----eEEEccCcceEEEEecC---------------Ccceeee
Confidence 444444443332211110 157899999998766665 89999999999995443 2223333
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 566 l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
+.- ...++++.++.. ...++.+..|..|++.|..+.+..+.|.+|++.|+.+.|+|| |+.++++
T Consensus 531 l~l-~~~~~~iv~hr~---------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D------grWlisa 594 (910)
T KOG1539|consen 531 LRL-GSSITGIVYHRV---------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD------GRWLISA 594 (910)
T ss_pred ecc-CCCcceeeeeeh---------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC------CcEEEEe
Confidence 321 235778888875 688999999999999999999999999999999999999999 9999999
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+.|++|++||+.++.++-.+. -..+++.+.|+|+|++|+|...| ..-||+|--++
T Consensus 595 smD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd-------~~gIylWsNks 649 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVD-------QNGIYLWSNKS 649 (910)
T ss_pred ecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEec-------CceEEEEEchh
Confidence 999999999999999987774 45678999999999999999987 25699997554
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.9e-19 Score=213.37 Aligned_cols=313 Identities=16% Similarity=0.182 Sum_probs=227.9
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccc
Q 000450 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1496)
Q Consensus 15 psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1496)
-+.+|-.++|.|..++|.|+=+.|.|.+||..- ......+.+|.+||..+.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM-----~tli~rFdeHdGpVRgv~------------------------ 58 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-----GTLIDRFDEHDGPVRGVD------------------------ 58 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhh-----hhHHhhhhccCCccceee------------------------
Confidence 357899999999999999999999999999873 356778889999999998
Q ss_pred cccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccc
Q 000450 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1496)
Q Consensus 95 ~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~ 174 (1496)
|-+.++++|||++|-.|+||+..+.+|+.+..-+ .+....+.+.++-+|++.+..+
T Consensus 59 ---FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH--lDYVRt~~FHheyPWIlSASDD------------------- 114 (1202)
T KOG0292|consen 59 ---FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH--LDYVRTVFFHHEYPWILSASDD------------------- 114 (1202)
T ss_pred ---ecCCCCeEEecCCccEEEEEecccceehhhhccc--cceeEEeeccCCCceEEEccCC-------------------
Confidence 6778999999999999999999999999775433 1122233344567799888776
Q ss_pred ccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccc
Q 000450 175 LVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLD 254 (1496)
Q Consensus 175 ~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~ 254 (1496)
.+|+||+-.+..++.++.. +.+- |-|..|.|. + +.++.|+-|.+|||||+..-+.
T Consensus 115 ---------------QTIrIWNwqsr~~iavltG-HnHY--VMcAqFhpt---E--DlIVSaSLDQTVRVWDisGLRk-- 169 (1202)
T KOG0292|consen 115 ---------------QTIRIWNWQSRKCIAVLTG-HNHY--VMCAQFHPT---E--DLIVSASLDQTVRVWDISGLRK-- 169 (1202)
T ss_pred ---------------CeEEEEeccCCceEEEEec-CceE--EEeeccCCc---c--ceEEEecccceEEEEeecchhc--
Confidence 7999999999999998886 3332 666677643 1 3456669999999999976520
Q ss_pred cccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeCCCCCceee
Q 000450 255 REEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVI 334 (1496)
Q Consensus 255 ~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v 334 (1496)
.+..++ + ..+ ++ .
T Consensus 170 -------------------k~~~pg-----~-----------~e~--~~------~------------------------ 182 (1202)
T KOG0292|consen 170 -------------------KNKAPG-----S-----------LED--QM------R------------------------ 182 (1202)
T ss_pred -------------------cCCCCC-----C-----------chh--hh------h------------------------
Confidence 110000 0 000 00 0
Q ss_pred eeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEeecceeeee
Q 000450 335 GAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLR 414 (1496)
Q Consensus 335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~ 414 (1496)
+.. . .++-|+. +
T Consensus 183 ~~~-~--------------------------------------~~dLfg~------~----------------------- 194 (1202)
T KOG0292|consen 183 GQQ-G--------------------------------------NSDLFGQ------T----------------------- 194 (1202)
T ss_pred ccc-c--------------------------------------chhhcCC------c-----------------------
Confidence 000 0 0000000 0
Q ss_pred eeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccC
Q 000450 415 METVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVD 494 (1496)
Q Consensus 415 v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~ 494 (1496)
+.++ |.+
T Consensus 195 --------------DaVV----------------K~V------------------------------------------- 201 (1202)
T KOG0292|consen 195 --------------DAVV----------------KHV------------------------------------------- 201 (1202)
T ss_pred --------------Ceee----------------eee-------------------------------------------
Confidence 0001 122
Q ss_pred CCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCcc
Q 000450 495 SRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA 572 (1496)
Q Consensus 495 ~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~ 572 (1496)
+.||...|+..+ |+|. .+++|+.|..|++|+|+ ..+.|.++ +.+||.+.
T Consensus 202 ----------LEGHDRGVNwaA------fhpTlpliVSG~DDRqVKlWrmn-------etKaWEvD------tcrgH~nn 252 (1202)
T KOG0292|consen 202 ----------LEGHDRGVNWAA------FHPTLPLIVSGADDRQVKLWRMN-------ETKAWEVD------TCRGHYNN 252 (1202)
T ss_pred ----------ecccccccceEE------ecCCcceEEecCCcceeeEEEec-------cccceeeh------hhhcccCC
Confidence 234666677766 8884 89999999999998887 23346554 45799999
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~ 652 (1496)
|.|+.|||. .++++|.|.|++|++||+...+.+++|+...+..+.++.+|. .+.|+.| -|+-+.
T Consensus 253 Vssvlfhp~---------q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~------lNLfAAg-HDsGm~ 316 (1202)
T KOG0292|consen 253 VSSVLFHPH---------QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPE------LNLFAAG-HDSGMI 316 (1202)
T ss_pred cceEEecCc---------cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCC------cceeeee-cCCceE
Confidence 999999997 789999999999999999999999999988899999999998 7777766 566666
Q ss_pred EEECCC
Q 000450 653 LASLET 658 (1496)
Q Consensus 653 lWdl~~ 658 (1496)
++-++.
T Consensus 317 VFkleR 322 (1202)
T KOG0292|consen 317 VFKLER 322 (1202)
T ss_pred EEEEcc
Confidence 776653
No 44
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=1.9e-19 Score=202.25 Aligned_cols=256 Identities=19% Similarity=0.235 Sum_probs=198.4
Q ss_pred eEEEEEccccCCCCCcceeEeccCCce--eeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccC
Q 000450 431 YISVWSLSQKHSGPGKQCRMVGEGFSF--VDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHK 508 (1496)
Q Consensus 431 ~v~vwsl~~~~~~~~~~~k~l~~G~~~--~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h 508 (1496)
..++|++.++. -. .+.+.++.+ ..|.... +..+ .+.+++.+.++++|....+.........-.||
T Consensus 126 ~~riWd~~Gk~---~~--~~~Ght~~ik~v~~v~~n----~~~~----~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 126 TSRIWDLKGKS---IK--TIVGHTGPIKSVAWVIKN----SSSC----LFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred eeEEEecCCce---EE--EEecCCcceeeeEEEecC----Cccc----eEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 47899865542 10 133344433 5676654 1122 47788899999999998876655555556799
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----cccCCC-----CCCccccCCcceEEEEecCCccEEEEEE
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----FERHNS-----PGASLKVNSHVSRQYFLGHTGAVLCLAA 578 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~-----l~~~d~-----~~~~~d~~s~~~~~~l~gH~~~V~~La~ 578 (1496)
...|-++.+.++.. ++++|+.|..+.||+... ++.... ..+.....++.++.++.||+++|.++.|
T Consensus 193 k~~V~sVsv~~sgt----r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGT----RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred ccceeEEEecCCCC----eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 99999999888887 999999999999965211 111100 0011123345678899999999999999
Q ss_pred ecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 579 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 579 spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
++ ...+.|+|.|.+|+.||+.++.++.++.+. .++.++.++|. .+++++||.|..++|||.++
T Consensus 269 ~d----------~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~------~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 269 SD----------ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPL------SKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cC----------CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccc------cceeeecCCCCceeecCCCC
Confidence 87 588999999999999999999999888764 57999999998 89999999999999999987
Q ss_pred Cc---EEEEecCCCCCcEEEEEcCCCCEE-EEEEcCCCCCCCCCCEEEEEECCCCe-EEEEEeCCCCCceeeeee
Q 000450 659 LR---VERMFPGHPNYPAKVVWDCPRGYI-ACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 659 ~~---~l~~~~gH~~~V~~V~~spdg~~L-~tgs~D~sg~~D~dg~V~VWDl~tg~-~~~~l~gh~a~vi~~~~~ 728 (1496)
+. ..++|.||.+.|.++.|+|...|+ ++++.| +++++||+++.. .+..+.+|...++.+.+.
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D--------~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD--------NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecC--------CeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 53 457899999999999999987755 566666 999999999977 899999999988887665
No 45
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=9.4e-20 Score=226.17 Aligned_cols=228 Identities=20% Similarity=0.192 Sum_probs=192.2
Q ss_pred eeecccccCccccccccCCCCCCCcccc-cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDD-FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~-~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
.+...+.++++++|+..+. ..... +.+|.+.|+++++.+... .+++|+.|.+++| |
T Consensus 220 ~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~g~V~~l~~~~~~~----~lvsgS~D~t~rv---------------W 276 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNG----YLILTRLVGHFGGVWGLAFPSGGD----KLVSGSTDKTERV---------------W 276 (537)
T ss_pred eEEecCCCceeEEeecccc----eEEEeeccCCCCCceeEEEecCCC----EEEEEecCCcEEe---------------E
Confidence 4667778889999998874 44445 899999999999776444 8999999999999 3
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
+..++.+..++.||.+.|.|+... +..+++||.|.+|++|++.++.+++.+.+|.++|+++.++
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~-----------~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----- 340 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTID-----------PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----- 340 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEcc-----------CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----
Confidence 456789999999999999999865 4678899999999999999999999999999999999986
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERV 714 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~ 714 (1496)
+..+++|+.|++|++||+.+++|++.+.||..+|.++.+.+. .++++|+.| ++|++||++++ +++.+
T Consensus 341 ---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D--------~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 341 ---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD--------TTIKVWDLRTKRKCIHT 408 (537)
T ss_pred ---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec--------cceEeecCCchhhhhhh
Confidence 359999999999999999999999999999999999988765 789999998 99999999999 99999
Q ss_pred EeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccc
Q 000450 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAF 774 (1496)
Q Consensus 715 l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~ 774 (1496)
+.+|.+-+..+.+- ++... ....|+++|+|+....+.....
T Consensus 409 l~~h~~~v~~l~~~--------------~~~Lv-----s~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 409 LQGHTSLVSSLLLR--------------DNFLV-----SSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred hcCCcccccccccc--------------cceeE-----eccccccEEEeecccCceeeee
Confidence 99999876443221 23333 3334999999987666544333
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.83 E-value=2.2e-20 Score=211.04 Aligned_cols=221 Identities=15% Similarity=0.207 Sum_probs=178.3
Q ss_pred eecccccCccccccccCCCCCCCcccccccCC-ccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKE-KIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~-~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~ 554 (1496)
+..+..++.||.|+..- +.+..+.+|. ..|++++ |+|+ .++++++||+|+| |++.
T Consensus 153 miSgD~gG~iKyWqpnm-----nnVk~~~ahh~eaIRdla------fSpnDskF~t~SdDg~iki--Wdf~--------- 210 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNM-----NNVKIIQAHHAEAIRDLA------FSPNDSKFLTCSDDGTIKI--WDFR--------- 210 (464)
T ss_pred EEEcCCCceEEecccch-----hhhHHhhHhhhhhhheec------cCCCCceeEEecCCCeEEE--Eecc---------
Confidence 44555678999999653 3445566666 8899998 5554 8999999999999 4422
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCC
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
..+....|.||.-.|.|++|||. ..+++|||.|..|++||.++|.++.++.+|...|..+.|+|+
T Consensus 211 ----~~kee~vL~GHgwdVksvdWHP~---------kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n-- 275 (464)
T KOG0284|consen 211 ----MPKEERVLRGHGWDVKSVDWHPT---------KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN-- 275 (464)
T ss_pred ----CCchhheeccCCCCcceeccCCc---------cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC--
Confidence 23455678999999999999997 789999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC-CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE-
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKTGARE- 712 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd-g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~- 712 (1496)
+++|+++|.|.+++++|+++.+.++.+.+|...|+++.|+|- ..++.+|+.| |.|..|.+..-+.+
T Consensus 276 ----~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D--------gsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 276 ----GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD--------GSVVHWVVGLEEPLG 343 (464)
T ss_pred ----CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC--------CceEEEecccccccc
Confidence 899999999999999999999999999999999999999995 4577778887 99999999844433
Q ss_pred EEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 713 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 713 ~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
..-.+|...+....+.+ + |....++ +.|.++|.|.
T Consensus 344 ~i~~AHd~~iwsl~~hP------l------Ghil~tg-----snd~t~rfw~ 378 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHP------L------GHILATG-----SNDRTVRFWT 378 (464)
T ss_pred CCCcccccceeeeeccc------c------ceeEeec-----CCCcceeeec
Confidence 33456776666665552 1 2222222 2388999996
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2e-19 Score=223.10 Aligned_cols=203 Identities=22% Similarity=0.309 Sum_probs=170.4
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~ 588 (1496)
...|++..+.++.. .+++++.|+.+++|.+... ++ ...+.+.+|...|.+++|+|+
T Consensus 159 ~~sv~~~~fs~~g~----~l~~~~~~~~i~~~~~~~~---------~~----~~~~~l~~h~~~v~~~~fs~d------- 214 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGR----ALAAASSDGLIRIWKLEGI---------KS----NLLRELSGHTRGVSDVAFSPD------- 214 (456)
T ss_pred cCceEEEEEcCCCC----eEEEccCCCcEEEeecccc---------cc----hhhccccccccceeeeEECCC-------
Confidence 67788887555555 8999999999999544210 00 245566899999999999998
Q ss_pred cCCCEEEEEeCCCcEEEEEC-CCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 000450 589 SFNEVLVSGSMDCSIRIWDL-GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 589 ~~~~~L~SGs~DgtV~lWDl-~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g 667 (1496)
++++++|+.|++|++||+ ..+..++++.+|...|++++|+|+ ++.++||+.|++|++||+++++++..+.+
T Consensus 215 --~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------g~~i~Sgs~D~tvriWd~~~~~~~~~l~~ 286 (456)
T KOG0266|consen 215 --GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------GNLLVSGSDDGTVRIWDVRTGECVRKLKG 286 (456)
T ss_pred --CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------CCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence 789999999999999999 566899999999999999999999 89999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe--EEEEEeCCCCC--ceeeeeecccccccccceEEcC
Q 000450 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA--RERVLRGTASH--SMFDHFCKGISMNSISGSVLNG 743 (1496)
Q Consensus 668 H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~--~~~~l~gh~a~--vi~~~~~~~~~~~~~sg~v~~g 743 (1496)
|...|++++|++++.+|++++.| +.|+|||+.+++ +...+.++... +..+.|++ + |
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp----~--------~ 346 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYD--------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP----N--------G 346 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCC--------ccEEEEECCCCceeeeecccCCCCCCceeEEEECC----C--------C
Confidence 99999999999999999999888 999999999999 67888888876 44455552 1 3
Q ss_pred CccccccceeeccCCcEEeeccccc
Q 000450 744 NTSVSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 744 ~~~~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
.. ++....|+.+++|++...
T Consensus 347 ~~-----ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 347 KY-----LLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cE-----EEEecCCCeEEEEEccCC
Confidence 33 334444889999998543
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=9.8e-20 Score=219.99 Aligned_cols=224 Identities=21% Similarity=0.216 Sum_probs=190.3
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.++.-+|.|++||..- +.++..|.+|.++|+.+. |||. .+|+|+.|-.|+||++.
T Consensus 25 LtslHsG~IQlWDYRM----~tli~rFdeHdGpVRgv~------FH~~qplFVSGGDDykIkVWnYk------------- 81 (1202)
T KOG0292|consen 25 LTSLHSGVIQLWDYRM----GTLIDRFDEHDGPVRGVD------FHPTQPLFVSGGDDYKIKVWNYK------------- 81 (1202)
T ss_pred EEeecCceeeeehhhh----hhHHhhhhccCCccceee------ecCCCCeEEecCCccEEEEEecc-------------
Confidence 3455678999999765 367888999999999999 6665 89999999999996655
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
+.++..+|.||-+.|..+.||+. -.+++|+|+|.||+||+..+++++..+++|...|.|..|+|.
T Consensus 82 --~rrclftL~GHlDYVRt~~FHhe---------yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt---- 146 (1202)
T KOG0292|consen 82 --TRRCLFTLLGHLDYVRTVFFHHE---------YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT---- 146 (1202)
T ss_pred --cceehhhhccccceeEEeeccCC---------CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc----
Confidence 45889999999999999999997 789999999999999999999999999999999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC---------------------------c--EEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000450 637 PWSDCFLSVGEDFSVALASLETL---------------------------R--VERMFPGHPNYPAKVVWDCPRGYIACL 687 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~---------------------------~--~l~~~~gH~~~V~~V~~spdg~~L~tg 687 (1496)
...++|+|-|.+||+||+... . ..+.+.||...|+-++|+|.-..+++|
T Consensus 147 --EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 147 --EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred --cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 689999999999999998531 1 124567999999999999999999999
Q ss_pred EcCCCCCCCCCCEEEEEECCCCeE--EEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 688 CRDHSRTSDAVDVLFIWDVKTGAR--ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 688 s~D~sg~~D~dg~V~VWDl~tg~~--~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
+.| ..|++|.+..-+. +-++.||...+.++.|.+. ...+++.++|++||+|++
T Consensus 225 ~DD--------RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~-----------------q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 225 ADD--------RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH-----------------QDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred CCc--------ceeeEEEeccccceeehhhhcccCCcceEEecCc-----------------cceeEecCCCccEEEEec
Confidence 888 9999999965443 5678999998888877632 123456667999999998
Q ss_pred cc
Q 000450 766 QN 767 (1496)
Q Consensus 766 ~~ 767 (1496)
..
T Consensus 280 ~k 281 (1202)
T KOG0292|consen 280 TK 281 (1202)
T ss_pred cc
Confidence 44
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=3.6e-19 Score=205.36 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=112.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE-EecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~-l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
++++.++|++++||.|+. +.+++. ...+.....|+..+|. +.+++.-+.|..|.+
T Consensus 356 rFissSDdks~riWe~~~---------------~v~ik~i~~~~~hsmP~~~~~P~---------~~~~~aQs~dN~i~i 411 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRI---------------PVPIKNIADPEMHTMPCLTLHPN---------GKWFAAQSMDNYIAI 411 (503)
T ss_pred eEeeeccCccEEEEEcCC---------------CccchhhcchhhccCcceecCCC---------CCeehhhccCceEEE
Confidence 567778888999976652 111111 1222334568888997 899999999999999
Q ss_pred EECCCCc---eEEEEcccC--CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000450 606 WDLGSGN---LITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1496)
Q Consensus 606 WDl~tg~---~l~~~~~H~--~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd 680 (1496)
+.+...- ....|.+|. |.-..+.|+|| |.+|++|+.||.+.+||.++-+.+..+..|...+..+.|+|.
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpD------G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD------GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCC------CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 9976432 335678884 56778999999 999999999999999999999999999999999999999996
Q ss_pred C-CEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 681 R-GYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 681 g-~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
. ..+++++.| |.|++||
T Consensus 486 e~Skvat~~w~--------G~Ikiwd 503 (503)
T KOG0282|consen 486 EPSKVATCGWD--------GLIKIWD 503 (503)
T ss_pred CcceeEecccC--------ceeEecC
Confidence 5 478888877 9999996
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.7e-19 Score=211.80 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=175.7
Q ss_pred cccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000450 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1496)
Q Consensus 482 ~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1496)
+.+..+++++.... .-+..|..|.+-|+++++.|... .+++++.|-.|++|+|+. .-.
T Consensus 74 sDD~~IrVfnynt~----ekV~~FeAH~DyIR~iavHPt~P----~vLtsSDDm~iKlW~we~--------------~wa 131 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTG----EKVKTFEAHSDYIRSIAVHPTLP----YVLTSSDDMTIKLWDWEN--------------EWA 131 (794)
T ss_pred cCCceEEEEecccc----eeeEEeeccccceeeeeecCCCC----eEEecCCccEEEEeeccC--------------cee
Confidence 44556677766543 44677899999999999555444 899999999999999883 125
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCE
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
+.+++.||+..|.+++|+|. +...++|++-|+||++|.+....+..++.+|...|++|.+-|.+ +..+
T Consensus 132 ~~qtfeGH~HyVMqv~fnPk--------D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g----dkpy 199 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPK--------DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG----DKPY 199 (794)
T ss_pred eeeEEcCcceEEEEEEecCC--------CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC----Ccce
Confidence 78999999999999999997 48899999999999999999999999999999999999998751 2349
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCC
Q 000450 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1496)
Q Consensus 642 l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~ 721 (1496)
++||+.|.+|++||.++..|++++.||...|..+.|+|.-..+++|+.| |+++||+..|-+++.++.-.-.+
T Consensus 200 lIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED--------GTvriWhs~Ty~lE~tLn~gleR 271 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED--------GTVRIWNSKTYKLEKTLNYGLER 271 (794)
T ss_pred EEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC--------ccEEEecCcceehhhhhhcCCce
Confidence 9999999999999999999999999999999999999999999999999 99999999999888887766666
Q ss_pred ceeee
Q 000450 722 SMFDH 726 (1496)
Q Consensus 722 vi~~~ 726 (1496)
+.++.
T Consensus 272 vW~I~ 276 (794)
T KOG0276|consen 272 VWCIA 276 (794)
T ss_pred EEEEe
Confidence 66653
No 51
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.8e-17 Score=196.36 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=150.5
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
++..+.+.+|+++|...+ ..+.+++.+|...|+++.|.-... ..+.++++.|..|.....+.-. .++....
T Consensus 519 LASasrdRlIHV~Dv~rn---y~l~qtld~HSssITsvKFa~~gl--n~~MiscGADksimFr~~qk~~----~g~~f~r 589 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRN---YDLVQTLDGHSSSITSVKFACNGL--NRKMISCGADKSIMFRVNQKAS----SGRLFPR 589 (1080)
T ss_pred hhhccCCceEEEEecccc---cchhhhhcccccceeEEEEeecCC--ceEEEeccCchhhheehhcccc----Cceeccc
Confidence 556667888999998765 457788999999999998655441 0166777778877652222100 0100000
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc---cCCCEEEEEECCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIILSPPQT 634 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~---H~~~V~~l~~sPd~~ 634 (1496)
..++ -.+..+..+++.|. ..++++++.|..|+|||+.+|+..+.|++ |.+....|...|.
T Consensus 590 ----~t~t--~~ktTlYDm~Vdp~---------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS-- 652 (1080)
T KOG1408|consen 590 ----HTQT--LSKTTLYDMAVDPT---------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS-- 652 (1080)
T ss_pred ----cccc--cccceEEEeeeCCC---------cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC--
Confidence 0001 11245778888886 78999999999999999999999999986 6677888999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
|.++++.+.|+++.++|.-+|+|+..+.||...|+.++|.+|-+.|++.+.| |.|.||.+..
T Consensus 653 ----giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD--------gCIFvW~lp~ 714 (1080)
T KOG1408|consen 653 ----GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD--------GCIFVWKLPL 714 (1080)
T ss_pred ----ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC--------ceEEEEECch
Confidence 9999999999999999999999999999999999999999999999999888 9999998854
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.81 E-value=5.5e-19 Score=193.58 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=172.9
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+.+|++.|....|.++.. .+++|+.|..|.+|+-. . .-+-...++||+++|..+.|.+|
T Consensus 43 l~gh~geI~~~~F~P~gs----~~aSgG~Dr~I~LWnv~--g------------dceN~~~lkgHsgAVM~l~~~~d--- 101 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGS----CFASGGSDRAIVLWNVY--G------------DCENFWVLKGHSGAVMELHGMRD--- 101 (338)
T ss_pred cCCCcceEEEEEECCCCC----eEeecCCcceEEEEecc--c------------cccceeeeccccceeEeeeeccC---
Confidence 578999999999555554 89999999999995421 1 11334567899999999999997
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
+..++|+|.|.+|+.||+++|++++.+++|.+-|..+. |.. +-...++|++.|++++|||+++..++++
T Consensus 102 ------~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~r---rg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 102 ------GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PSR---RGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ------CCEEEEecCCceEEEEecccceeeehhccccceeeecC--ccc---cCCeEEEecCCCceEEEEeecccchhhc
Confidence 89999999999999999999999999999999999887 431 1245889999999999999999888888
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGN 744 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~ 744 (1496)
+. ....++++.|.-++..+.+|+-| +.|++||++.++...++.||...++.+... ..|.
T Consensus 171 ~~-~kyqltAv~f~d~s~qv~sggId--------n~ikvWd~r~~d~~~~lsGh~DtIt~lsls------------~~gs 229 (338)
T KOG0265|consen 171 FE-NKYQLTAVGFKDTSDQVISGGID--------NDIKVWDLRKNDGLYTLSGHADTITGLSLS------------RYGS 229 (338)
T ss_pred cc-cceeEEEEEecccccceeecccc--------CceeeeccccCcceEEeecccCceeeEEec------------cCCC
Confidence 75 34579999999999999999998 999999999999999999999988887333 2266
Q ss_pred ccccccceeeccCCcEEeecccccc
Q 000450 745 TSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 745 ~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
...+..+ |.++|+|+.+.+-
T Consensus 230 ~llsnsM-----d~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 230 FLLSNSM-----DNTVRVWDVRPFA 249 (338)
T ss_pred ccccccc-----cceEEEEEecccC
Confidence 6666666 9999999985543
No 53
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=4.1e-16 Score=180.13 Aligned_cols=485 Identities=14% Similarity=0.123 Sum_probs=285.7
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCC--------cEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDG--------SILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEH 85 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG--------~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~ 85 (1496)
.|...|-|++++||.-.++||-.-| .+++||-.+ .....++.+-...|+|++|
T Consensus 102 GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-----L~TL~V~g~f~~GV~~vaF-------------- 162 (626)
T KOG2106|consen 102 GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-----LSTLHVIGFFDRGVTCVAF-------------- 162 (626)
T ss_pred CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-----ceeeeeeccccccceeeee--------------
Confidence 4666799999999998999885544 499999653 4455666666678999996
Q ss_pred ccccccccccccccCCCCEEEE---EeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEE-EcccccccCC
Q 000450 86 WKAENSSNVMGKSSLDNGALIS---ACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVC-IGCCFIDTNQ 161 (1496)
Q Consensus 86 ~~~~~~~~~~g~~s~d~~~LaS---as~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~-~G~~~id~~~ 161 (1496)
...++..+.. -+.+-.|.|||+..++.....+-.. .......+.|.+..+++ +|.
T Consensus 163 ------------sk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn--e~v~~a~FHPtd~nliit~Gk------- 221 (626)
T KOG2106|consen 163 ------------SKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN--EVVFLATFHPTDPNLIITCGK------- 221 (626)
T ss_pred ------------cccCCCceEEEecCCCccccchhhchhhhccCcceecc--ceEEEEEeccCCCcEEEEeCC-------
Confidence 1122222333 3556679999999876443322110 11122334555555544 443
Q ss_pred cccccccccccccccccccCCCCCCCCccEEEEEECCceEEEEE--EecCccccCCeEEEEEeeccCCCCceeEEEEeCC
Q 000450 162 LSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQT--VFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSV 239 (1496)
Q Consensus 162 l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~--l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~d 239 (1496)
+.+..|++.++.+..+ +|.+... ..|.+++|.+ + ++++.|+++
T Consensus 222 ----------------------------~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~e---n---gdviTgDS~ 266 (626)
T KOG2106|consen 222 ----------------------------GHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLE---N---GDVITGDSG 266 (626)
T ss_pred ----------------------------ceEEEEEccCCceEEEeeccccccc-eEEEEEEEcC---C---CCEEeecCC
Confidence 6788888887766543 3443333 5688999883 3 458889999
Q ss_pred CcEEEEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc-ccceeeee
Q 000450 240 GRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS-TIGEICFV 318 (1496)
Q Consensus 240 G~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~-~ige~~~~ 318 (1496)
|.|.+|+..... +. +++ . +|.+++.++...-+|.++- +.+++-+ -+||..- .+.++..|
T Consensus 267 G~i~Iw~~~~~~---------~~---k~~-----~-aH~ggv~~L~~lr~GtllS-GgKDRki-~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 267 GNILIWSKGTNR---------IS---KQV-----H-AHDGGVFSLCMLRDGTLLS-GGKDRKI-ILWDDNYRKLRETELP 326 (626)
T ss_pred ceEEEEeCCCce---------EE---eEe-----e-ecCCceEEEEEecCccEee-cCccceE-EeccccccccccccCc
Confidence 999999975441 11 122 2 5788888888888888776 6666643 3677332 22233222
Q ss_pred cceeEeeCCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCC
Q 000450 319 DNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSG 398 (1496)
Q Consensus 319 ~~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~ 398 (1496)
+..- .+-...- . +..+.|++...
T Consensus 327 e~~G----------~iRtv~e-~----------------~~di~vGTtrN------------------------------ 349 (626)
T KOG2106|consen 327 EQFG----------PIRTVAE-G----------------KGDILVGTTRN------------------------------ 349 (626)
T ss_pred hhcC----------CeeEEec-C----------------CCcEEEeeccc------------------------------
Confidence 1100 0000000 0 00111111110
Q ss_pred ceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCccccee
Q 000450 399 VKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478 (1496)
Q Consensus 399 ~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l 478 (1496)
+++ ++... ++++......|+ ..|....++..+ .+
T Consensus 350 ------------~iL------------------------~Gt~~-~~f~~~v~gh~d--elwgla~hps~~-------q~ 383 (626)
T KOG2106|consen 350 ------------FIL------------------------QGTLE-NGFTLTVQGHGD--ELWGLATHPSKN-------QL 383 (626)
T ss_pred ------------eEE------------------------Eeeec-CCceEEEEeccc--ceeeEEcCCChh-------he
Confidence 000 00000 000001111111 223322211111 36
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC-EEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~-~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
.+...++.+++|+ ..++ ..... -...+.|.. |+|. .++.|+..|...|.+ .
T Consensus 384 ~T~gqdk~v~lW~--~~k~--~wt~~---~~d~~~~~~------fhpsg~va~Gt~~G~w~V~d---------------~ 435 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKL--EWTKI---IEDPAECAD------FHPSGVVAVGTATGRWFVLD---------------T 435 (626)
T ss_pred eeccCcceEEEcc--CCce--eEEEE---ecCceeEee------ccCcceEEEeeccceEEEEe---------------c
Confidence 6777888999999 2211 11111 124455655 7776 789999999888833 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEE-cccCCCEEEEEECCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVM-HHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~-~~H~~~V~~l~~sPd~~~ 635 (1496)
++...+..-.. +.++++++|+|+ +.+||.|+.|+.|.+|-+... ...... +.|..+|+.+.|++|
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~---------G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D--- 502 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPD---------GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD--- 502 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCC---------CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC---
Confidence 33233332233 789999999998 999999999999999998754 333222 334589999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC--------------cEEEEe----cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000450 636 HPWSDCFLSVGEDFSVALASLETL--------------RVERMF----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~--------------~~l~~~----~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~ 697 (1496)
++++.+.+.|..|..|..... .|..-| ..|...|..++-+.+++.+++|...
T Consensus 503 ---s~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~------- 572 (626)
T KOG2106|consen 503 ---SQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDF------- 572 (626)
T ss_pred ---CceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccC-------
Confidence 899999999999999943321 121111 1233445555556666666665555
Q ss_pred CCEEEEEECCC---CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 698 VDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 698 dg~V~VWDl~t---g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
|+|+++...- ...-..+.||.+.+..+.|..+... +...-.|..+.+|.+
T Consensus 573 -g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~-----------------li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 573 -GKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSH-----------------LISTGKDTSIMQWRL 625 (626)
T ss_pred -ceEEEEccccCCCcccceeeccccceeEEEEEeeCCce-----------------EEecCCCceEEEEEe
Confidence 9999998643 3346788999999999877622111 122224888889975
No 54
>PTZ00421 coronin; Provisional
Probab=99.79 E-value=1.1e-17 Score=207.52 Aligned_cols=185 Identities=15% Similarity=0.209 Sum_probs=148.2
Q ss_pred cccCCccEEEEEeec-cccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 505 FVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s-~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
+.+|.+.|+++.+.+ +. ..+++|+.||.|++|+... .+ .......++..+.+|...|.+++|+|+
T Consensus 71 l~GH~~~V~~v~fsP~d~----~~LaSgS~DgtIkIWdi~~--~~------~~~~~~~~l~~L~gH~~~V~~l~f~P~-- 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDP----QKLFTASEDGTIMGWGIPE--EG------LTQNISDPIVHLQGHTKKVGIVSFHPS-- 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCC----CEEEEEeCCCEEEEEecCC--Cc------cccccCcceEEecCCCCcEEEEEeCcC--
Confidence 578999999999444 22 3899999999999954431 10 000112456789999999999999996
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~ 663 (1496)
.+.+|++|+.|++|++||+.+++.+..+.+|...|.++.|+|+ +.+|++++.|++|++||+++++.+.
T Consensus 137 ------~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd------G~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 137 ------AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD------GSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred ------CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC------CCEEEEecCCCEEEEEECCCCcEEE
Confidence 1579999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred EecCCCCC-cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe-EEEEEeCCC
Q 000450 664 MFPGHPNY-PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTA 719 (1496)
Q Consensus 664 ~~~gH~~~-V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~-~~~~l~gh~ 719 (1496)
.+.+|... +..+.|.+++..+++++.+ ++.| +.|++||+++.. .......+.
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s--~s~D--r~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCS--KSQQ--RQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecC--CCCC--CeEEEEeCCCCCCceeEeccCC
Confidence 99999865 4578899998888876642 2223 899999998754 344444343
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.79 E-value=1.8e-18 Score=194.37 Aligned_cols=232 Identities=16% Similarity=0.187 Sum_probs=184.2
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
-+.++.+++++++||.. |.....+.+|.+.|.+++.+..+. ....+++++.|.++++|.|+.-..
T Consensus 117 ~IltgsYDg~~riWd~~-----Gk~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~--------- 181 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWDLK-----GKSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGEN--------- 181 (423)
T ss_pred eEEEeecCCeeEEEecC-----CceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchh---------
Confidence 47788899999999976 467788899999999766544332 011599999999999988872110
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC-------------------------CC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-------------------------SG 611 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~-------------------------tg 611 (1496)
.-+..+...||...|-++...++ +..++|||.|.+|++|+.. ++
T Consensus 182 --~~~~~~~~~GHk~~V~sVsv~~s---------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 182 --KVKALKVCRGHKRSVDSVSVDSS---------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred --hhhHHhHhcccccceeEEEecCC---------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 11233334599999999999887 8999999999999999932 12
Q ss_pred ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCC
Q 000450 612 NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691 (1496)
Q Consensus 612 ~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~ 691 (1496)
.++.++.+|+.+|.+|.|++. ..++|+|.|++|+.||+.++++..++.+. ....+|..+|..++|++||.|
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~-------~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssd- 321 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDA-------TVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSD- 321 (423)
T ss_pred CceEEecccccceeeEEEcCC-------CceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCC-
Confidence 366789999999999999874 58999999999999999999998877643 458999999999999999998
Q ss_pred CCCCCCCCEEEEEECCCCe---EEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 692 SRTSDAVDVLFIWDVKTGA---RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 692 sg~~D~dg~V~VWDl~tg~---~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
..+++||.+++. ....+.||+.-+-.+.+|+..... +++.+-|+++|.|+.+
T Consensus 322 -------r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~----------------~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 322 -------RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQ----------------LVSGSYDNTVKLWDVR 376 (423)
T ss_pred -------CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceE----------------EEEEecCCeEEEEEec
Confidence 999999999863 357899999977777777543333 3334449999999973
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=4.1e-19 Score=194.29 Aligned_cols=228 Identities=20% Similarity=0.232 Sum_probs=186.9
Q ss_pred eecccccCccccccccCCCCCC----CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCC
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAG----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~----~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~ 553 (1496)
+.+++-++.+.+|+..+++-.. +....|.-+...|.|+.|..+.- .+++|+.||.|+||+
T Consensus 228 LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE----MlAsGsqDGkIKvWr------------ 291 (508)
T KOG0275|consen 228 LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE----MLASGSQDGKIKVWR------------ 291 (508)
T ss_pred EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH----HhhccCcCCcEEEEE------------
Confidence 5666778999999998876544 33445667789999998666665 899999999999943
Q ss_pred ccccCCcceEEEEe-cCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCC
Q 000450 554 SLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPP 632 (1496)
Q Consensus 554 ~~d~~s~~~~~~l~-gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd 632 (1496)
+.+|.|++.|. .|+..|+|+.|+.| +..++|+|.|.+|++.-+++|+++..|++|+..|+...|.++
T Consensus 292 ---i~tG~ClRrFdrAHtkGvt~l~FSrD---------~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 292 ---IETGQCLRRFDRAHTKGVTCLSFSRD---------NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred ---EecchHHHHhhhhhccCeeEEEEccC---------cchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 55788888885 89999999999997 788999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC--------------------------------------------
Q 000450 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-------------------------------------------- 668 (1496)
Q Consensus 633 ~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH-------------------------------------------- 668 (1496)
|+.+++++.||+|++|+.++.+|+.+|..-
T Consensus 360 ------G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSG 433 (508)
T KOG0275|consen 360 ------GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSG 433 (508)
T ss_pred ------CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccC
Confidence 999999999999999999887665554310
Q ss_pred ---CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCc
Q 000450 669 ---PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 745 (1496)
Q Consensus 669 ---~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~ 745 (1496)
.+.-.+.+.+|.|.++.+.+.| +.+|.+.+.+|++++++.-|...++...-.+.
T Consensus 434 kREgGdFi~~~lSpkGewiYcigED--------~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH--------------- 490 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGEWIYCIGED--------GVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH--------------- 490 (508)
T ss_pred CccCCceEEEEecCCCcEEEEEccC--------cEEEEEEeecCceeeeeecccccccccccCcc---------------
Confidence 1122345779999999999998 99999999999999999999988887643321
Q ss_pred cccccceeeccCCcEEeec
Q 000450 746 SVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 746 ~~s~~l~~~~~D~~ir~W~ 764 (1496)
.+.+-+.++|+.++.|.
T Consensus 491 --qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 --QNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cchhhhhcccchhhhcC
Confidence 11233445688888884
No 57
>PTZ00420 coronin; Provisional
Probab=99.78 E-value=3e-17 Score=204.64 Aligned_cols=236 Identities=10% Similarity=0.067 Sum_probs=168.4
Q ss_pred ccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
..+.+++|+.... .....+.+|...|.++.+.+.. ++.+++|+.||.|+||... .+. . .......+
T Consensus 52 ~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~---~~lLASgS~DgtIrIWDi~--t~~----~-~~~~i~~p 117 (568)
T PTZ00420 52 LIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCF---SEILASGSEDLTIRVWEIP--HND----E-SVKEIKDP 117 (568)
T ss_pred ceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCC---CCEEEEEeCCCeEEEEECC--CCC----c-cccccccc
Confidence 4567888987653 2345678999999999844421 1389999999999995433 110 0 00000134
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
...+.+|...|.+++|+|+ ...+|++|+.|++|++||+++++.+..+. |...|.++.|+|+ |.+|
T Consensus 118 ~~~L~gH~~~V~sVaf~P~--------g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd------G~lL 182 (568)
T PTZ00420 118 QCILKGHKKKISIIDWNPM--------NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK------GNLL 182 (568)
T ss_pred eEEeecCCCcEEEEEECCC--------CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC------CCEE
Confidence 5678899999999999997 13467899999999999999999887775 5678999999999 8999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEE-----EEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEe
Q 000450 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAK-----VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLR 716 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~-----V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~ 716 (1496)
++++.|+.|+|||+++++.+..+.+|.+.+.. ..|++++.+|++++.| . ..+++|+|||+++ ++.+..+.
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d--~--~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS--K--NNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcC--C--CCccEEEEEECCCCCCceEEEE
Confidence 99999999999999999999999999876533 3456899999998876 1 1124899999985 56666554
Q ss_pred CCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 717 gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
.+.+...+.-+.+ ..+|. .++....|+++|.|++.
T Consensus 259 ld~~~~~L~p~~D-----~~tg~----------l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 259 IDNASAPLIPHYD-----ESTGL----------IYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ecCCccceEEeee-----CCCCC----------EEEEEECCCeEEEEEcc
Confidence 4443222211111 11111 12233459999999873
No 58
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.9e-17 Score=178.05 Aligned_cols=206 Identities=16% Similarity=0.232 Sum_probs=171.7
Q ss_pred ccccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEE
Q 000450 502 RDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLA 577 (1496)
Q Consensus 502 ~~~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~La 577 (1496)
.+++.+|.+++..++ ++|. .|++++.|..|+| |+.-. ..+-.++..+ .+|+..|.+++
T Consensus 7 ~~~~~gh~~r~W~~a------whp~~g~ilAscg~Dk~vri--w~~~~----------~~s~~ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVA------WHPGKGVILASCGTDKAVRI--WSTSS----------GDSWTCKTVLDDGHKRSVRSVA 68 (312)
T ss_pred EEeecCCCCcEEEEE------eccCCceEEEeecCCceEEE--EecCC----------CCcEEEEEeccccchheeeeee
Confidence 456789999999998 6666 6999999999999 44210 1123455555 57999999999
Q ss_pred EecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC--ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000450 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1496)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg--~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd 655 (1496)
|+|. +++|++||.|.++.||.-..+ +++.++.+|...|.+++|+++ |++||+++.|++|-+|.
T Consensus 69 wsp~---------g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s------G~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 69 WSPH---------GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS------GNYLATCSRDKSVWIWE 133 (312)
T ss_pred ecCC---------CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC------CCEEEEeeCCCeEEEEE
Confidence 9997 899999999999999986643 688999999999999999999 99999999999999999
Q ss_pred CCC---CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC---CCeEEEEEeCCCCCceeeeeec
Q 000450 656 LET---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK---TGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 656 l~~---~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~---tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
+.. .+|...+..|...|..|.|+|....|++++.| ++|++|.-. .-++..++.||...+....|.+
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD--------nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD--------NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccC--------CeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 863 56888999999999999999999999999998 999999876 3478999999998777776662
Q ss_pred ccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 730 ~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
+|+ .++..+.|+++++|.+
T Consensus 206 ------------~G~-----rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 206 ------------IGS-----RLVSCSDDGTVSIWRL 224 (312)
T ss_pred ------------CCc-----eEEEecCCcceEeeee
Confidence 132 3456667999999974
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.77 E-value=1.5e-18 Score=200.24 Aligned_cols=225 Identities=17% Similarity=0.169 Sum_probs=183.2
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
...+-++.+++|+.-+. +.+.+++.+|...|.++++..+.. .+.+++.|+.+++ ||++
T Consensus 231 LS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~----~fLS~sfD~~lKl---------------wDtE 288 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGT----SFLSASFDRFLKL---------------WDTE 288 (503)
T ss_pred EecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCC----eeeeeecceeeee---------------eccc
Confidence 34455678999998763 578899999999999999777776 8999999999998 5688
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
+|++...+.. ...++|+.|+|+ +.+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-|+
T Consensus 289 TG~~~~~f~~-~~~~~cvkf~pd--------~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~------ 353 (503)
T KOG0282|consen 289 TGQVLSRFHL-DKVPTCVKFHPD--------NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE------ 353 (503)
T ss_pred cceEEEEEec-CCCceeeecCCC--------CCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC------
Confidence 8888877653 235789999998 2589999999999999999999999999999999999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCc--------------------------------E--------------EEEecCCC--C
Q 000450 639 SDCFLSVGEDFSVALASLETLR--------------------------------V--------------ERMFPGHP--N 670 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~--------------------------------~--------------l~~~~gH~--~ 670 (1496)
+..|++.+.|+++++|+.+..- . ...|.||. +
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 8999999999999999987531 0 11233563 3
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCcccccc
Q 000450 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL 750 (1496)
Q Consensus 671 ~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~ 750 (1496)
.-..|.|||||++|++|..| |.+++||-+|-+++..+..|....+.+.+.+... +.
T Consensus 434 ys~~v~fSpDG~~l~SGdsd--------G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~----------------Sk 489 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSD--------GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP----------------SK 489 (503)
T ss_pred ceeeEEEcCCCCeEEeecCC--------ccEEEeechhhhhhhccccCCcceEEEEecCCCc----------------ce
Confidence 55778999999999999888 9999999999999999999988888877775211 11
Q ss_pred ceeeccCCcEEeec
Q 000450 751 LLPIHEDGTFRQSQ 764 (1496)
Q Consensus 751 l~~~~~D~~ir~W~ 764 (1496)
+..+.-||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 22223388999985
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.8e-18 Score=180.29 Aligned_cols=189 Identities=18% Similarity=0.196 Sum_probs=156.9
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 526 ~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
+.+++++.||++++ |++ .....+++.++.|...|.++.|++. .++.++++|.|++|++
T Consensus 74 ~~~~~a~GDGSLrl--~d~------------~~~s~Pi~~~kEH~~EV~Svdwn~~--------~r~~~ltsSWD~TiKL 131 (311)
T KOG0277|consen 74 NQVIAASGDGSLRL--FDL------------TMPSKPIHKFKEHKREVYSVDWNTV--------RRRIFLTSSWDGTIKL 131 (311)
T ss_pred ceEEEEecCceEEE--ecc------------CCCCcchhHHHhhhhheEEeccccc--------cceeEEeeccCCceEe
Confidence 47888999999999 552 1223578899999999999999886 3778888899999999
Q ss_pred EECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEE
Q 000450 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYI 684 (1496)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp-dg~~L 684 (1496)
||...++.+++|.+|..-|.+..|+|.. +++|+++|.|+++++||++.......++.|...+.++.|+. +...|
T Consensus 132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~-----~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 132 WDPNRPNSVQTFNGHNSCIYQAAFSPHI-----PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ecCCCCcceEeecCCccEEEEEecCCCC-----CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 9999999999999999999999999985 88999999999999999987555556999999999999986 56678
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEee
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 763 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W 763 (1496)
+||+.| +.||+||++.- ..+.++.||.-.+-.+.|.+.- .+...+.+. |-+.|+|
T Consensus 207 ~Tg~vd--------~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~-----------~~lLaSasY-----DmT~riw 262 (311)
T KOG0277|consen 207 ATGGVD--------NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH-----------ASLLASASY-----DMTVRIW 262 (311)
T ss_pred EecCCC--------ceEEEEehhhccccceeecCCceEEEEEecCcch-----------hhHhhhccc-----cceEEec
Confidence 888888 99999999874 5688999999877777665321 122333334 9999999
Q ss_pred cc
Q 000450 764 QI 765 (1496)
Q Consensus 764 ~l 765 (1496)
+.
T Consensus 263 ~~ 264 (311)
T KOG0277|consen 263 DP 264 (311)
T ss_pred cc
Confidence 86
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.77 E-value=3e-19 Score=195.33 Aligned_cols=166 Identities=23% Similarity=0.372 Sum_probs=142.9
Q ss_pred ccCC--EEEEEEcCCcEEEEEecccccCCCCCCcc-ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC
Q 000450 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASL-KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1496)
Q Consensus 523 f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~-d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~ 599 (1496)
|+|+ ++++|+-||-|.||++. .+ +.. |.. -+....+.-|..+|.|+.|+.| .+.|++|+.
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~--~G-----KlrKDLk-YQAqd~fMMmd~aVlci~FSRD---------sEMlAsGsq 283 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYT--TG-----KLRKDLK-YQAQDNFMMMDDAVLCISFSRD---------SEMLASGSQ 283 (508)
T ss_pred eCCCCceEeeccccceeeeehhc--cc-----hhhhhhh-hhhhcceeecccceEEEeeccc---------HHHhhccCc
Confidence 6665 99999999999995543 11 110 000 0112234567899999999997 799999999
Q ss_pred CCcEEEEECCCCceEEEEc-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000450 600 DCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 600 DgtV~lWDl~tg~~l~~~~-~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~s 678 (1496)
||.|++|.+.+|.|++.|. .|+..|+++.|+.| +..++|++-|.++++.-++.|+++..|.||.+.|+.+.|+
T Consensus 284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD------~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD------NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred CCcEEEEEEecchHHHHhhhhhccCeeEEEEccC------cchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 9999999999999999997 89999999999999 8899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
+||.++++++.| |+|+||+.+|++++.++..-.
T Consensus 358 ~dG~~iisaSsD--------gtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 358 DDGHHIISASSD--------GTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred CCCCeEEEecCC--------ccEEEecCcchhhhhhccCCC
Confidence 999999999999 999999999999998876433
No 62
>PTZ00421 coronin; Provisional
Probab=99.76 E-value=3.5e-17 Score=203.06 Aligned_cols=172 Identities=16% Similarity=0.230 Sum_probs=140.5
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-------ceEEEEcccCCCEEEEEECCCCCCC
Q 000450 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 564 ~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-------~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
..+.||++.|++++|+|. ++++|++|+.|++|++||+.++ +++..+.+|...|.++.|+|+.
T Consensus 69 ~~l~GH~~~V~~v~fsP~--------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--- 137 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPF--------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--- 137 (493)
T ss_pred ceEeCCCCCEEEEEEcCC--------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC---
Confidence 347899999999999993 1789999999999999999765 3577899999999999999983
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
+++|++++.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.| ++|+|||+++++.+..+.
T Consensus 138 --~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D--------g~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 138 --MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred --CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC--------CEEEEEECCCCcEEEEEe
Confidence 4699999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred CCCCCce-eeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccc
Q 000450 717 GTASHSM-FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 717 gh~a~vi-~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
+|..... ...+++. .+.++.... .-..|+++++|+++...
T Consensus 208 ~H~~~~~~~~~w~~~------~~~ivt~G~-------s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 208 AHASAKSQRCLWAKR------KDLIITLGC-------SKSQQRQIMLWDTRKMA 248 (493)
T ss_pred cCCCCcceEEEEcCC------CCeEEEEec-------CCCCCCeEEEEeCCCCC
Confidence 9986433 2223311 111111100 11348899999986543
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.76 E-value=1.2e-16 Score=180.40 Aligned_cols=222 Identities=22% Similarity=0.269 Sum_probs=179.6
Q ss_pred cccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000450 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1496)
Q Consensus 480 ~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1496)
+...++.+.+|+.... +....+..|...+.++.+.+... .+++++.||.+.+ |+ ..+
T Consensus 68 ~~~~~~~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~i~~--~~-------------~~~ 124 (289)
T cd00200 68 SGSSDKTIRLWDLETG----ECVRTLTGHTSYVSSVAFSPDGR----ILSSSSRDKTIKV--WD-------------VET 124 (289)
T ss_pred EEcCCCeEEEEEcCcc----cceEEEeccCCcEEEEEEcCCCC----EEEEecCCCeEEE--EE-------------CCC
Confidence 3344677888988764 33445667888899988555432 6666666999999 33 334
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
++....+.+|.+.|.++.|+|+ +.++++++.|+.|++||+.+++.+..+..|...|.++.|+|+ +
T Consensus 125 ~~~~~~~~~~~~~i~~~~~~~~---------~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------~ 189 (289)
T cd00200 125 GKCLTTLRGHTDWVNSVAFSPD---------GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD------G 189 (289)
T ss_pred cEEEEEeccCCCcEEEEEEcCc---------CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC------c
Confidence 4667778889999999999996 788998888999999999999999999999999999999998 7
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
+.+++++.|+.|++||+++++.+..+..|...+.++.|+|++.++++++.| |.|++||+.+++....+.+|.
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED--------GTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC--------CcEEEEEcCCceeEEEccccC
Confidence 889999999999999999999999998899999999999998888887767 999999999999999999988
Q ss_pred CCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 720 SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 720 a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
..+....+.+. + ..++....|+.+++|+
T Consensus 262 ~~i~~~~~~~~------------~-----~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPD------------G-----KRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCC------------C-----CEEEEecCCCeEEecC
Confidence 77666655421 1 1234445588899884
No 64
>PTZ00420 coronin; Provisional
Probab=99.76 E-value=5.3e-17 Score=202.44 Aligned_cols=141 Identities=20% Similarity=0.286 Sum_probs=124.5
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc--------eEEEEcccCCCEEEEEECC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--------LITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~--------~l~~~~~H~~~V~~l~~sP 631 (1496)
..++..+.+|.+.|.+++|+|+ .+.+|+||+.|++|++||+.++. ++..+.+|...|.++.|+|
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~--------~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPC--------FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCC--------CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence 3567889999999999999996 26899999999999999998642 3457889999999999999
Q ss_pred CCCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 632 PQTEHPWSD-CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 632 d~~~~~~g~-~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+ +. ++++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|+++|.| +.|+|||+++++
T Consensus 136 ~------g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 136 M------NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQE 200 (568)
T ss_pred C------CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC--------CEEEEEECCCCc
Confidence 8 55 56899999999999999999887776 66789999999999999999998 999999999999
Q ss_pred EEEEEeCCCCCce
Q 000450 711 RERVLRGTASHSM 723 (1496)
Q Consensus 711 ~~~~l~gh~a~vi 723 (1496)
.+..+.+|.+...
T Consensus 201 ~i~tl~gH~g~~~ 213 (568)
T PTZ00420 201 IASSFHIHDGGKN 213 (568)
T ss_pred EEEEEecccCCce
Confidence 9999999997543
No 65
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.9e-16 Score=171.79 Aligned_cols=189 Identities=17% Similarity=0.214 Sum_probs=157.9
Q ss_pred eecccccCccccccccCCCCCCCccccc-ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDF-VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~-~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
+++.+.+..+++|+...+.. -.+...+ .+|+..|+++++.+... .|++|+.|.++.| |...
T Consensus 30 lAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~----~La~aSFD~t~~I--w~k~----------- 91 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGR----YLASASFDATVVI--WKKE----------- 91 (312)
T ss_pred EEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCc----EEEEeeccceEEE--eecC-----------
Confidence 56666778889998774211 1222222 57999999999666655 9999999999999 5421
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQ 633 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~ 633 (1496)
-...+++.++.||...|.|++|+++ |.+||+++.|+.|-+|.+..+ +++..+..|+..|..+.|+|.
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~s---------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt- 161 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSAS---------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT- 161 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCC---------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-
Confidence 1234788999999999999999997 999999999999999999754 478999999999999999997
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECC---CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 634 TEHPWSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 634 ~~~~~g~~l~Sgs~DgsV~lWdl~---~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
..+|+|+|.|.+|++|.-. +..|.+++.+|.+.|++++|+|.|..|++++.| ++|+||-..
T Consensus 162 -----~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD--------~tv~Iw~~~ 225 (312)
T KOG0645|consen 162 -----EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD--------GTVSIWRLY 225 (312)
T ss_pred -----cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC--------cceEeeeec
Confidence 6799999999999999865 457899999999999999999999999999988 999999844
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.75 E-value=4.4e-16 Score=168.05 Aligned_cols=128 Identities=22% Similarity=0.312 Sum_probs=116.9
Q ss_pred EcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC
Q 000450 532 FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG 611 (1496)
Q Consensus 532 s~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg 611 (1496)
...|.|.|..|. +.++++.++.|.....|+.|.|+ |++|++|+.|-.|.+||+...
T Consensus 166 ~GlG~v~ILsyp---------------sLkpv~si~AH~snCicI~f~p~---------GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 166 NGLGCVEILSYP---------------SLKPVQSIKAHPSNCICIEFDPD---------GRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred cCCceEEEEecc---------------ccccccccccCCcceEEEEECCC---------CceEeeccccceeeccChhHh
Confidence 446888886665 33678899999999999999998 899999999999999999998
Q ss_pred ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 612 NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 612 ~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
-|++.|.-+.-||+.+.|+.+ |++|+|+|+|+.|-|=++++|..+..++ +.++...|+|+|...+|+-+|.|
T Consensus 222 iC~R~isRldwpVRTlSFS~d------g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 222 ICERCISRLDWPVRTLSFSHD------GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hhheeeccccCceEEEEeccC------cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 899999999999999999999 9999999999999999999999998886 77889999999999999999988
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.75 E-value=5.5e-16 Score=205.71 Aligned_cols=191 Identities=19% Similarity=0.173 Sum_probs=158.4
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeec-cccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s-~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
.++++..++.+++||.... +....+.+|...|+++.+.+ +. +.+++|+.||.|++| +
T Consensus 547 ~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~----~~L~Sgs~Dg~v~iW--d------------ 604 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADP----TLLASGSDDGSVKLW--S------------ 604 (793)
T ss_pred EEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCC----CEEEEEcCCCEEEEE--E------------
Confidence 4677888999999998753 45566789999999998443 22 389999999999993 3
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
..++.....+..| ..|.++.|++. ++.+|++|+.|++|++||+++++ .+..+.+|...|.++.|. +
T Consensus 605 -~~~~~~~~~~~~~-~~v~~v~~~~~--------~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~-- 671 (793)
T PLN00181 605 -INQGVSIGTIKTK-ANICCVQFPSE--------SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D-- 671 (793)
T ss_pred -CCCCcEEEEEecC-CCeEEEEEeCC--------CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C--
Confidence 3344566667654 67999999664 28899999999999999998776 577888999999999997 4
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCC------CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 635 EHPWSDCFLSVGEDFSVALASLET------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~------~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+.++++++.|++|++||++. .+++..+.+|...+..++|+|++.+|++|+.| ++|++|+...
T Consensus 672 ----~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D--------~~v~iw~~~~ 739 (793)
T PLN00181 672 ----SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET--------NEVFVYHKAF 739 (793)
T ss_pred ----CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC--------CEEEEEECCC
Confidence 67999999999999999974 36788999999999999999999999999998 9999999877
Q ss_pred CeEEEE
Q 000450 709 GARERV 714 (1496)
Q Consensus 709 g~~~~~ 714 (1496)
+..+..
T Consensus 740 ~~~~~s 745 (793)
T PLN00181 740 PMPVLS 745 (793)
T ss_pred CCceEE
Confidence 655433
No 68
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=7.4e-16 Score=180.68 Aligned_cols=198 Identities=16% Similarity=0.213 Sum_probs=143.8
Q ss_pred ccccCccccccccCCCC-CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000450 481 TFCQDTVPRSEHVDSRQ-AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1496)
Q Consensus 481 s~~~~~i~lWd~~~~~~-~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1496)
....+.|-++++..+-. .....-.+ -+...|+.+.+.+ |.+.+|+.|++||.|++|+.. .++ .....
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdP---FD~~rLAVa~ddg~i~lWr~~--a~g------l~e~~ 666 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDP---FDDERLAVATDDGQINLWRLT--ANG------LPENE 666 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCC---CChHHeeecccCceEEEEEec--cCC------CCccc
Confidence 34456777777765421 11111111 1233455554222 444599999999999996554 111 11123
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.++...+.+|...|++|.|||- -...|++++.|.+|++||+.+++....+.+|++.|..++|+|+ |
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPL--------AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd------G 732 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPL--------AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD------G 732 (1012)
T ss_pred CCcceeeecccceEEEEEecch--------hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC------C
Confidence 4567789999999999999996 2689999999999999999999999999999999999999999 9
Q ss_pred CEEEEEeCCCcEEEEECCCCcE-EEEecCCC-CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 640 DCFLSVGEDFSVALASLETLRV-ERMFPGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~-l~~~~gH~-~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+.++++|.|++|++|..+.++. ++.-+|-. ..--.|.|--||+++++.+.| .-++..|.+||.++
T Consensus 733 r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd----k~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 733 RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD----KSSERQVQMYDAQT 799 (1012)
T ss_pred cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc----ccchhhhhhhhhhh
Confidence 9999999999999999887643 34333322 233568899999999998887 22236788998866
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.75 E-value=1e-16 Score=179.90 Aligned_cols=209 Identities=15% Similarity=0.182 Sum_probs=175.7
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
...+|..|...|.++...|... .+++|+.|..-.+ |+ ..++.....+.||+..|+|+.|+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~----l~aTGGgDD~Afl--W~-------------~~~ge~~~eltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNN----LVATGGGDDLAFL--WD-------------ISTGEFAGELTGHKDSVTCCSFSH 116 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCc----eEEecCCCceEEE--EE-------------ccCCcceeEecCCCCceEEEEEcc
Confidence 3467899999999998655443 8899999988888 33 456677788999999999999998
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~ 660 (1496)
+ +.+|+||+.+|.|+||+..+|.....+......|.-+.|+|. +++|+.|+.||++.+|.+.++.
T Consensus 117 d---------gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~------a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 117 D---------GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR------AHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred C---------ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccc------ccEEEeecCCCcEEEEECCCcc
Confidence 7 899999999999999999999999888877788999999997 8999999999999999999988
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceE
Q 000450 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1496)
Q Consensus 661 ~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v 740 (1496)
..+.+.||..++++=.|.|||+.++++..| |+|++||.+||+.+..+.+.... ..-| +..+..+..+
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d--------gti~~Wn~ktg~p~~~~~~~e~~---~~~~--~~~~~~~~~~ 248 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDD--------GTIIVWNPKTGQPLHKITQAEGL---ELPC--ISLNLAGSTL 248 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecC--------ceEEEEecCCCceeEEecccccC---cCCc--ccccccccee
Confidence 889999999999999999999999999998 99999999999999988754421 1122 3445556666
Q ss_pred EcCCccccccceeecc
Q 000450 741 LNGNTSVSSLLLPIHE 756 (1496)
Q Consensus 741 ~~g~~~~s~~l~~~~~ 756 (1496)
..|+..+...+++...
T Consensus 249 ~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGS 264 (399)
T ss_pred EeccCCccEEEEcccc
Confidence 6777766666655543
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2e-17 Score=177.62 Aligned_cols=201 Identities=18% Similarity=0.156 Sum_probs=160.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+...+|.+++||+..+ ...+..+++|...|.++.+..... ..+++++-||+|++ |+ .
T Consensus 76 ~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~EV~Svdwn~~~r---~~~ltsSWD~TiKL--W~-------------~ 134 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMP---SKPIHKFKEHKREVYSVDWNTVRR---RIFLTSSWDGTIKL--WD-------------P 134 (311)
T ss_pred EEEEecCceEEEeccCCC---CcchhHHHhhhhheEEeccccccc---eeEEeeccCCceEe--ec-------------C
Confidence 334445678999995433 245677899999999987333222 26788899999999 43 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
..+..++++.||...|....|+|.+ +++++++|.|+++++||++.......+..|...|.++.|+.-.
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~--------~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~---- 202 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSPHI--------PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN---- 202 (311)
T ss_pred CCCcceEeecCCccEEEEEecCCCC--------CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC----
Confidence 3457789999999999999999973 8999999999999999998654445589999999999998763
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-EEEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCe-EEEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLR-VERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGA-RERV 714 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~-~l~~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~tg~-~~~~ 714 (1496)
.+.+++|+.|+.|+.||+++.+ ++..+.+|.-.|..|+|||... .|++++.| -+++|||.+.+. ++.+
T Consensus 203 -~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD--------mT~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 203 -HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYD--------MTVRIWDPERQDSAIET 273 (311)
T ss_pred -CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcccc--------ceEEecccccchhhhhh
Confidence 6799999999999999999865 5788899999999999999754 67777777 899999998654 3455
Q ss_pred EeCCCC
Q 000450 715 LRGTAS 720 (1496)
Q Consensus 715 l~gh~a 720 (1496)
+.-|+.
T Consensus 274 ~~~HtE 279 (311)
T KOG0277|consen 274 VDHHTE 279 (311)
T ss_pred hhccce
Confidence 555553
No 71
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=6.6e-17 Score=198.26 Aligned_cols=216 Identities=19% Similarity=0.136 Sum_probs=165.5
Q ss_pred cc-cCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----cccCC-----------------------------
Q 000450 505 FV-HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----FERHN----------------------------- 549 (1496)
Q Consensus 505 ~~-~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~-----l~~~d----------------------------- 549 (1496)
+. .|.+.|+++.|..++. +||+|+.||.|+||.... +..++
T Consensus 262 ~~~ah~gaIw~mKFS~DGK----yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGK----YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred cccccCCcEEEEEeCCCCc----eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 44 8999999999666666 999999999999964321 00000
Q ss_pred -------CCC-Cccc---cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 000450 550 -------SPG-ASLK---VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH 618 (1496)
Q Consensus 550 -------~~~-~~~d---~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~ 618 (1496)
... ...+ .-..++.+.+.||.+.|..|.|+- +++|+|+|+|.|||+|++...+|+++|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F- 406 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF- 406 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc----------CCeeEeccccccEEeecCCCcceeeEE-
Confidence 000 0000 012356677899999999999996 699999999999999999999999999
Q ss_pred ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCC
Q 000450 619 HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAV 698 (1496)
Q Consensus 619 ~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~d 698 (1496)
.|...|+||+|+|.. .++|+|||-|+.||||++...+.+.-...+ .-|++++|+|||++.++|+.+
T Consensus 407 ~HndfVTcVaFnPvD-----DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~-------- 472 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVD-----DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFN-------- 472 (712)
T ss_pred ecCCeeEEEEecccC-----CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEec--------
Confidence 589999999999974 889999999999999999988877655544 679999999999999999999
Q ss_pred CEEEEEECCCCeEEEEE--eCC------CCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 699 DVLFIWDVKTGARERVL--RGT------ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 699 g~V~VWDl~tg~~~~~l--~gh------~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
|.+++|+++.-++.... .-| ..+++..+|++. +. ..++-.+.|.+||+.++
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~-------------~~---~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG-------------DP---DEVLVTSNDSRIRIYDG 531 (712)
T ss_pred cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC-------------CC---CeEEEecCCCceEEEec
Confidence 99999999876654332 222 114666666631 11 13455667999999887
No 72
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.72 E-value=1.8e-16 Score=182.86 Aligned_cols=240 Identities=17% Similarity=0.143 Sum_probs=175.4
Q ss_pred eecccccCccccccccCCCCCC------CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCC
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAG------DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSP 551 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~------~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~ 551 (1496)
+++....+.+.+||........ .....+.+|.+.=..+.+.. +.+-.+++|+.|+.|.+|..+ ..+
T Consensus 140 VAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~---~~~g~Lls~~~d~~i~lwdi~--~~~--- 211 (422)
T KOG0264|consen 140 VATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR---QQEGTLLSGSDDHTICLWDIN--AES--- 211 (422)
T ss_pred EEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc---ccceeEeeccCCCcEEEEecc--ccc---
Confidence 3344455667777765432211 11225678877545544222 112389999999999994433 111
Q ss_pred CCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC--CCceEEEEcccCCCEEEEEE
Q 000450 552 GASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLITVMHHHVAPVRQIIL 629 (1496)
Q Consensus 552 ~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~--tg~~l~~~~~H~~~V~~l~~ 629 (1496)
-+...-.+...+.+|...|..++|++.+ ..++++.+.|+.+.|||++ +.++.+...+|.++|.+++|
T Consensus 212 ---~~~~~~~p~~~~~~h~~~VeDV~~h~~h--------~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 212 ---KEDKVVDPKTIFSGHEDVVEDVAWHPLH--------EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred ---cCCccccceEEeecCCcceehhhccccc--------hhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 0111234567789999999999999974 7899999999999999999 56677888999999999999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 630 SPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 630 sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+|-+ +..||+||.|++|+|||+|+. ++++++.+|...|.+|.|+|... .|++++.| +.+.|||+.
T Consensus 281 np~~-----~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D--------~rl~vWDls 347 (422)
T KOG0264|consen 281 NPFN-----EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD--------RRLNVWDLS 347 (422)
T ss_pred CCCC-----CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC--------CcEEEEecc
Confidence 9985 779999999999999999985 46899999999999999999765 66667776 999999995
Q ss_pred C-C-------------eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 708 T-G-------------ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 708 t-g-------------~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
. | +++..-.||++.+.-..+++ .-.=.+.+++.|+.+.+|+.
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp----------------~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP----------------NEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCC----------------CCCeEEEEecCCceEEEeec
Confidence 4 2 23456678888766555553 12223456778999999985
No 73
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=9e-18 Score=200.74 Aligned_cols=212 Identities=16% Similarity=0.244 Sum_probs=176.3
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+..|...|.+........ .+++|+.|-.+-+ |. .....++..|++|..+|.||.|+++
T Consensus 24 ~~~hsaav~~lk~~~s~r----~~~~Gg~~~k~~L--~~-------------i~kp~~i~S~~~hespIeSl~f~~~--- 81 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSR----SLVTGGEDEKVNL--WA-------------IGKPNAITSLTGHESPIESLTFDTS--- 81 (825)
T ss_pred hhhhhhhhceeeeeccce----eeccCCCceeecc--cc-------------ccCCchhheeeccCCcceeeecCcc---
Confidence 566777777776544444 6778877766655 32 2223344568999999999999986
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
..+|+.|+.||+|++||++.++.++++.+|...+.+|.|+|- +.++++|+.|..+++||.+...|.+.
T Consensus 82 ------E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~------~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 82 ------ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY------GEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred ------hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc------eEEeccccccccceehhhhccCceee
Confidence 789999999999999999999999999999999999999998 88999999999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGN 744 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~ 744 (1496)
+.+|...|..+.|+|+|++++.++.| .+++|||...|+....|.+|...+....|.+.-..
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed--------~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~L----------- 210 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGED--------NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVL----------- 210 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCc--------ceeeeecccccccccccccccccccccccCchhhh-----------
Confidence 99999999999999999999999988 99999999999999999999998888766642111
Q ss_pred ccccccceeeccCCcEEeecccccccccccc
Q 000450 745 TSVSSLLLPIHEDGTFRQSQIQNDERGVAFS 775 (1496)
Q Consensus 745 ~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~ 775 (1496)
.. +-..|.++|.|+++.++-..+.+
T Consensus 211 -la-----~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 211 -LA-----PGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred -hc-----cCCCCceeeeeccceeEEeeccC
Confidence 11 22339999999998887655443
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.71 E-value=5.6e-16 Score=194.22 Aligned_cols=236 Identities=16% Similarity=0.145 Sum_probs=186.9
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC---C-CCCCccccCCcceEEEEecCCccEEEE
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH---N-SPGASLKVNSHVSRQYFLGHTGAVLCL 576 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~---d-~~~~~~d~~s~~~~~~l~gH~~~V~~L 576 (1496)
...+...|.+.|+|+.+.++.. ++++|++|+-|.||.... .+. . ..+...+.+.-+++..+.||.+.|..+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~----~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv 135 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGS----YLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV 135 (942)
T ss_pred hheeeccccCceeEEEECCCCC----eEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCcccee
Confidence 4455688999999999555555 999999999999976653 111 1 123334556667889999999999999
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
.|+|+ +.+|+|+|.|++|.+||..+++++.++.+|.+.|-.+.|.|- |++|||-+.|++|++|++
T Consensus 136 ~Wsp~---------~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~------Gky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 136 NWSPD---------DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI------GKYFASQSDDRTLKVWRT 200 (942)
T ss_pred ccCCC---------ccEEEEecccceEEEEccccceeeeeeecccccccceEECCc------cCeeeeecCCceEEEEEc
Confidence 99997 899999999999999999999999999999999999999998 999999999999999998
Q ss_pred CCCcEEEEecCCCC------CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecc
Q 000450 657 ETLRVERMFPGHPN------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKG 730 (1496)
Q Consensus 657 ~~~~~l~~~~gH~~------~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~ 730 (1496)
.+..+.+.+.++-. ....+.|||||.||++...- ..+..++.|.+-.+.+....|-||.+.+.++.|.+.
T Consensus 201 ~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~----n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 201 SDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV----NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred ccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc----cCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 88888877765433 56889999999999986542 122268999999999999999999999999999875
Q ss_pred cccccccceEEcCCccccc----cceeeccCCcEEeec
Q 000450 731 ISMNSISGSVLNGNTSVSS----LLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 731 ~~~~~~sg~v~~g~~~~s~----~l~~~~~D~~ir~W~ 764 (1496)
+....-. +|...-.. -+-.-++|+++.+|.
T Consensus 277 lfe~~~~----ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 277 LFERNNK----NGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred Hhccccc----cCCccCCCcceEEEEEecCCccEEEEe
Confidence 4332211 22222221 122345699999997
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.71 E-value=8.5e-17 Score=192.13 Aligned_cols=221 Identities=17% Similarity=0.222 Sum_probs=174.4
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEE-EEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSS-SMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts-~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
+...+.++++++|+.......+ ...+.+|.+-|.. .+|.+... -+++.|+.|+.|.++.
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~--~~~~~~~~g~i~~~i~y~e~~~---~~l~~g~~D~~i~v~~--------------- 87 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLE--THAFEGPKGFIANSICYAESDK---GRLVVGGMDTTIIVFK--------------- 87 (745)
T ss_pred EeecCCCCceeeeeccCccccc--ceecccCcceeeccceeccccC---cceEeecccceEEEEe---------------
Confidence 3445567889999976543322 2335666666665 55443111 1699999999999833
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
.....+..+|+||...|.|++...+ +. ++|||.|.|+++|-+ +++...+.+|+.+|++++.-|+
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~---------~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e---- 151 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGED---------GT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE---- 151 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCc---------Cc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCC----
Confidence 2345788999999999999987654 44 999999999999975 6777889999999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
+ .++|||.|++|++|. .++++++|.||.+.|..+++-++..+ ++++.| |.|+.|++ +|++++++.
T Consensus 152 --~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsND--------g~Ir~w~~-~ge~l~~~~ 216 (745)
T KOG0301|consen 152 --N-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSND--------GSIRLWDL-DGEVLLEMH 216 (745)
T ss_pred --C-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecCC--------ceEEEEec-cCceeeeee
Confidence 4 899999999999996 48899999999999999999988765 566666 99999999 899999999
Q ss_pred CCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 717 gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
||++.++.... ......++++.+|+++|+|...
T Consensus 217 ghtn~vYsis~-----------------~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 217 GHTNFVYSISM-----------------ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccceEEEEEEe-----------------cCCCCeEEEecCCceEEEeecC
Confidence 99987766531 1223456788889999999864
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=3.2e-16 Score=185.98 Aligned_cols=241 Identities=16% Similarity=0.177 Sum_probs=184.2
Q ss_pred cCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccC
Q 000450 429 RPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHK 508 (1496)
Q Consensus 429 ~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h 508 (1496)
+.+++.|+.....+. ..+ ..+++=....+|.++.++. .+|. .+...+.+.++++|+..... .-+..++..|
T Consensus 46 Dg~i~~W~~~~d~~~-~s~-~~~asme~HsDWVNDiiL~--~~~~---tlIS~SsDtTVK~W~~~~~~--~~c~stir~H 116 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNE-PST-PYIASMEHHSDWVNDIILC--GNGK---TLISASSDTTVKVWNAHKDN--TFCMSTIRTH 116 (735)
T ss_pred CceEEEeccccccCC-ccc-chhhhhhhhHhHHhhHHhh--cCCC---ceEEecCCceEEEeecccCc--chhHhhhhcc
Confidence 445889974222110 001 1222222347898876542 2331 26677788999999987543 2567788999
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEe-cCCccEEEEEEecCCCCccc
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKG 587 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~-gH~~~V~~La~spd~~~~~~ 587 (1496)
.+.|.|++++.... ..+|+|+-|+.|.+|..+.... ..-..........+. ||...|.+++.++.
T Consensus 117 ~DYVkcla~~ak~~---~lvaSgGLD~~IflWDin~~~~-----~l~~s~n~~t~~sl~sG~k~siYSLA~N~t------ 182 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNN---ELVASGGLDRKIFLWDINTGTA-----TLVASFNNVTVNSLGSGPKDSIYSLAMNQT------ 182 (735)
T ss_pred cchheeeeecccCc---eeEEecCCCccEEEEEccCcch-----hhhhhccccccccCCCCCccceeeeecCCc------
Confidence 99999999753322 2789999999999966552110 000001112233344 89999999999886
Q ss_pred CcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 000450 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 588 ~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g 667 (1496)
+..+++|+..+.+++||.++++.+..+++|+.-|..+..++| |..++|+|.|++|++||+...+|+.++..
T Consensus 183 ---~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD------Gt~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 183 ---GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD------GTRLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred ---ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC------CCeEeecCCCceEEeeeccccceeeeEEe
Confidence 789999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 668 H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
|...|+++..+|+=.++++|++| |.|+.=|+++.
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~rd--------~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGRD--------GNIYRTDLRNP 287 (735)
T ss_pred ccCceEEEeeCCCcceEEecCCC--------CcEEecccCCc
Confidence 99999999999999999999998 99999999985
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.70 E-value=7.3e-15 Score=159.03 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=111.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCc-ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~-~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
.|++|-+||.|.+ |+ ..++ +.+..-..|+..|+.+.+++| ..++++||.|.+-++
T Consensus 161 ~ii~Ghe~G~is~--~d-------------a~~g~~~v~s~~~h~~~Ind~q~s~d---------~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 161 TIIAGHEDGSISI--YD-------------ARTGKELVDSDEEHSSKINDLQFSRD---------RTYFITGSKDTTAKL 216 (327)
T ss_pred EEEEecCCCcEEE--EE-------------cccCceeeechhhhccccccccccCC---------cceEEecccCcccee
Confidence 6889999999998 33 3343 445556779999999999998 899999999999999
Q ss_pred EECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC-cEEEEECCCC------------cEEEEecCCCCCc
Q 000450 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF-SVALASLETL------------RVERMFPGHPNYP 672 (1496)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg-sV~lWdl~~~------------~~l~~~~gH~~~V 672 (1496)
||..+-+++.++.. ..||++.+++|.. ...++-|+.|. -|.-=+-+.| +.+....||-++|
T Consensus 217 ~D~~tl~v~Kty~t-e~PvN~aaisP~~-----d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI 290 (327)
T KOG0643|consen 217 VDVRTLEVLKTYTT-ERPVNTAAISPLL-----DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI 290 (327)
T ss_pred eeccceeeEEEeee-cccccceeccccc-----ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc
Confidence 99999999999976 4589999999972 34444455442 2222223333 3455668999999
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 673 ~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
++|+|+|+|+-.++|+.| |.|++.-..
T Consensus 291 NsvAfhPdGksYsSGGED--------G~VR~h~Fd 317 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGED--------GYVRLHHFD 317 (327)
T ss_pred ceeEECCCCcccccCCCC--------ceEEEEEec
Confidence 999999999999999988 999987443
No 78
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=1.4e-16 Score=174.57 Aligned_cols=210 Identities=17% Similarity=0.170 Sum_probs=176.4
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
++...+.+|.+.|+.++.-+.+. .+.+++.|.+-+| |..+++.|...+.||.+.|+|+.|+
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp----i~gtASADhTA~i---------------Ws~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP----ICGTASADHTARI---------------WSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred eehhhhcccccceeeehhhcCCc----ceeecccccceeE---------------EeeccccceeeecccccceeeEEec
Confidence 45667889999999977555443 6777888888888 4466889999999999999999999
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECC------C------------------------------C----ceEEEEcc
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLG------S------------------------------G----NLITVMHH 619 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~------t------------------------------g----~~l~~~~~ 619 (1496)
+. +.+++++|.|++-.||... . + .++..|++
T Consensus 200 ~s---------~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg 270 (481)
T KOG0300|consen 200 NS---------GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG 270 (481)
T ss_pred cc---------cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec
Confidence 96 8999999999999999721 0 0 15678899
Q ss_pred cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCC
Q 000450 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1496)
Q Consensus 620 H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg 699 (1496)
|.+.|.+..|-.. |+.+++++.|.+..+||+++++++..+.||....+.++-+|..+++++.+.| -
T Consensus 271 H~~vV~a~dWL~g------g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD--------t 336 (481)
T KOG0300|consen 271 HRAVVSACDWLAG------GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD--------T 336 (481)
T ss_pred cccceEehhhhcC------cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccC--------c
Confidence 9999999999887 8999999999999999999999999999999999999999999999999999 8
Q ss_pred EEEEEECCCC-eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccc
Q 000450 700 VLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 700 ~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
+.++||.+.. ..+.++.||+..++...|.. +... ++-+.|.++|+|+|++-.
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~-------------dd~v-----VSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNT-------------DDRV-----VSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEec-------------CCce-----eecCCCceEEEeeecccc
Confidence 9999999753 56889999999998887762 2222 233348899999997644
No 79
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.1e-12 Score=157.36 Aligned_cols=494 Identities=12% Similarity=0.055 Sum_probs=270.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccc-cceeEeeeccccccccCccccccccccccccc
Q 000450 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHS-APIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1496)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt-~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1496)
..|+|+|++.+.+.||.+=.||.|.+|++.. + .-....+.||+ ..|.+|+||
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~--~--w~~~~vi~g~~drsIE~L~W~----------------------- 78 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN--N--WFLEPVIHGPEDRSIESLAWA----------------------- 78 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCC--C--ceeeEEEecCCCCceeeEEEc-----------------------
Confidence 4599999999999999999999999999984 2 22333455665 589999952
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccc
Q 000450 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1496)
Q Consensus 96 g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~ 175 (1496)
++.+|.|.+.+|+|+-||+.+++.+...... |.+.--.+..+....+++||+
T Consensus 79 -----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~---gg~IWsiai~p~~~~l~Igcd-------------------- 130 (691)
T KOG2048|consen 79 -----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN---GGAIWSIAINPENTILAIGCD-------------------- 130 (691)
T ss_pred -----cCCeEEeecCCceEEEEecccCceeEEecCC---CcceeEEEeCCccceEEeecC--------------------
Confidence 4667999999999999999999887765544 333334466678888899986
Q ss_pred cccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcccc
Q 000450 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1496)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~ 255 (1496)
++.+..++...+++.+.-.-.+. .+.+-++++. +++.+ ++.|+.||.|++||+..+..+.
T Consensus 131 -------------dGvl~~~s~~p~~I~~~r~l~rq-~sRvLslsw~---~~~~~--i~~Gs~Dg~Iriwd~~~~~t~~- 190 (691)
T KOG2048|consen 131 -------------DGVLYDFSIGPDKITYKRSLMRQ-KSRVLSLSWN---PTGTK--IAGGSIDGVIRIWDVKSGQTLH- 190 (691)
T ss_pred -------------CceEEEEecCCceEEEEeecccc-cceEEEEEec---CCccE--EEecccCceEEEEEcCCCceEE-
Confidence 24455555555555443221121 2345666665 33332 6677999999999998763110
Q ss_pred ccCCCcccCCCccceeeeccCcccCce----EEEEecCCcEEEEEeCCeEEEEEcCCCc--ccceee-eecceeEeeCCC
Q 000450 256 EEGNGLCKSSSQLDMAILQNGVVEGGH----LVSVATCGNIIALVLKDHCIFRLLGSGS--TIGEIC-FVDNLFCLEGGS 328 (1496)
Q Consensus 256 ~~~~~l~~~ek~i~~v~~~~~~~~~~~----~va~s~dg~~l~t~~~~~~~~~l~d~~~--~ige~~-~~~~~l~~~~~~ 328 (1496)
-...++ .....+.. .|.+-.++ +|+++++.+ .++.||... .+..+. .-..++|.....
T Consensus 191 -------~~~~~~------d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G-~V~FWd~~~gTLiqS~~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 191 -------IITMQL------DRLSKREPTIVWSVLFLRDS-TIASGDSAG-TVTFWDSIFGTLIQSHSCHDADVLALAVAD 255 (691)
T ss_pred -------Eeeecc------cccccCCceEEEEEEEeecC-cEEEecCCc-eEEEEcccCcchhhhhhhhhcceeEEEEcC
Confidence 000011 11112112 33333334 455555554 334477654 222210 001222222111
Q ss_pred CCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCc--CCCCCceeeEEEe
Q 000450 329 TNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAV--SYPSGVKFSIHFI 406 (1496)
Q Consensus 329 ~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~--~~~~~~~~~~~f~ 406 (1496)
+ ..++...+.|+.+..|+....... |.+-.. ..+++.+....+-
T Consensus 256 ~----------------------------~d~vfsaGvd~~ii~~~~~~~~~~------wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 256 N----------------------------EDRVFSAGVDPKIIQYSLTTNKSE------WVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred C----------------------------CCeEEEccCCCceEEEEecCCccc------eeeeccccCCcccceeeeeec
Confidence 1 226666777777777766543221 311110 1122222211111
Q ss_pred ecceeeeeeeeeeccccccccccCeEEEEEc-cccCCCCC------cceeEeccCC--ceeeeccccccccCCCCcccce
Q 000450 407 QMSLYLLRMETVCFHVEETSQWRPYISVWSL-SQKHSGPG------KQCRMVGEGF--SFVDWVNNSTFLDENEGSCTGK 477 (1496)
Q Consensus 407 ~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl-~~~~~~~~------~~~k~l~~G~--~~~~w~~~~~~~~~~dG~~i~~ 477 (1496)
. .+++.. .+. .+.+-.+ +.++-.+. .-++....+. ....|
T Consensus 302 ~---~l~sgG-----~d~------~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w----------------- 350 (691)
T KOG2048|consen 302 N---ALISGG-----RDF------TLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLW----------------- 350 (691)
T ss_pred c---eEEecc-----eee------EEEEccccccCchhhhccccccccceeecCccceEEEEe-----------------
Confidence 1 111110 000 0111000 00000000 0000111110 01223
Q ss_pred eecccccCccccccccCCCCCC-----CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAG-----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG 552 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~-----~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~ 552 (1496)
....+.+|.+-...+.+ .+.+.+......|++.+..++.. .++.+. -.+.+|++.+.-. ..
T Consensus 351 -----~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~----~Ia~st-~~~~~iy~L~~~~----~v 416 (691)
T KOG2048|consen 351 -----KAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGN----LIAIST-VSRTKIYRLQPDP----NV 416 (691)
T ss_pred -----ccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCC----EEEEee-ccceEEEEeccCc----ce
Confidence 12334445544332221 22222333345677777555554 666654 3456665544100 00
Q ss_pred CccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-CCCcEEEEECCCCc--eEEEEc--ccCCCEEEE
Q 000450 553 ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGN--LITVMH--HHVAPVRQI 627 (1496)
Q Consensus 553 ~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs-~DgtV~lWDl~tg~--~l~~~~--~H~~~V~~l 627 (1496)
+ .+.+.....-.-.+..+.|.-| +..++-.+ .+..+.+.+++++. .+..+. ....+|..+
T Consensus 417 k------~~~v~~~~~~~~~a~~i~ftid---------~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l 481 (691)
T KOG2048|consen 417 K------VINVDDVPLALLDASAISFTID---------KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRL 481 (691)
T ss_pred e------EEEeccchhhhccceeeEEEec---------CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeE
Confidence 0 0001111112334667777776 55555555 77888888887654 222222 346789999
Q ss_pred EECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 628 ~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
..+|+ |++||..+.++.|.+|++++++.......-...|++++++| +.+.|+++..| +.|+=+|+
T Consensus 482 ~~Ssd------G~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~--------nQv~efdi 547 (691)
T KOG2048|consen 482 VVSSD------GNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN--------NQVFEFDI 547 (691)
T ss_pred EEcCC------CCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecC--------CeEEEEec
Confidence 99999 99999999999999999999877555545558899999995 66788888887 99999999
Q ss_pred CC
Q 000450 707 KT 708 (1496)
Q Consensus 707 ~t 708 (1496)
+.
T Consensus 548 ~~ 549 (691)
T KOG2048|consen 548 EA 549 (691)
T ss_pred ch
Confidence 54
No 80
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=9.3e-16 Score=163.10 Aligned_cols=197 Identities=18% Similarity=0.228 Sum_probs=169.6
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
+++....+..+.+||...+ +....+.+|...|+++.|..+.. .+++|+.|.++++|...
T Consensus 73 kf~s~GgDk~v~vwDV~TG----kv~Rr~rgH~aqVNtV~fNeesS----Vv~SgsfD~s~r~wDCR------------- 131 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTG----KVDRRFRGHLAQVNTVRFNEESS----VVASGSFDSSVRLWDCR------------- 131 (307)
T ss_pred ccccCCCCceEEEEEcccC----eeeeecccccceeeEEEecCcce----EEEeccccceeEEEEcc-------------
Confidence 4666677888999999874 66778899999999999887777 89999999999994433
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
..+.++++.+....+.|.++... +..++.||.||+++.||++.|++...+-+| ||+++.|+++
T Consensus 132 S~s~ePiQildea~D~V~Si~v~-----------~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d---- 194 (307)
T KOG0316|consen 132 SRSFEPIQILDEAKDGVSSIDVA-----------EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKD---- 194 (307)
T ss_pred cCCCCccchhhhhcCceeEEEec-----------ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCC----
Confidence 34567899999889999999875 577999999999999999999877666554 8999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCc--EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYP--AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V--~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
++|.+.++-|+++++.|-++|+.+..+.||.+.= ..++++.....+++|+.| |.|++||+..++.+..
T Consensus 195 --~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED--------G~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 195 --GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED--------GKVYFWDLVDETQISK 264 (307)
T ss_pred --CCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCC--------ceEEEEEeccceeeee
Confidence 9999999999999999999999999999998743 456677777889999988 9999999999999988
Q ss_pred EeCCCCC
Q 000450 715 LRGTASH 721 (1496)
Q Consensus 715 l~gh~a~ 721 (1496)
+.-|...
T Consensus 265 ~~~~~~v 271 (307)
T KOG0316|consen 265 LSVVSTV 271 (307)
T ss_pred eccCCce
Confidence 8877765
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.69 E-value=4.3e-16 Score=176.98 Aligned_cols=234 Identities=19% Similarity=0.173 Sum_probs=179.0
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.+++...+..|++|+....+. .+..++.+..+.|+++.+-+++. .++.++.|+..++|+
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~--~~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~Wn--------------- 247 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKS--ELISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRLWN--------------- 247 (459)
T ss_pred hhhhcchhhhhhhhhcccchh--hhhhhhhccCCCcceeeecCCCc----eEEeecCCCceeeee---------------
Confidence 366677788999999887652 56677888888999999777666 888889999999943
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCC-Cccc-----------------------Cc------CCCEEEEEeCCCcEEEE
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVG-TAKG-----------------------WS------FNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~-~~~~-----------------------~~------~~~~L~SGs~DgtV~lW 606 (1496)
..+.+...+|.||++.|+++.|...+. ...+ ++ ....++||-.|++|++|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFW 327 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEE
Confidence 445567788899999999998865431 0000 00 13345667777777777
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC----CCCcEEEEEcCCCC
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH----PNYPAKVVWDCPRG 682 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH----~~~V~~V~~spdg~ 682 (1496)
|++++.+......+. .|+++..+++ +..+.+.+.|.++.+.|+++.+..+.|..- ....+.+.|||++.
T Consensus 328 D~Rs~~~~~sv~~gg-~vtSl~ls~~------g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 328 DIRSADKTRSVPLGG-RVTSLDLSMD------GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred eccCCceeeEeecCc-ceeeEeeccC------CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 777777777777665 8999999998 888889999999999999999888777532 22488999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCC--ceeeeeecccccccccceEEcCCccccccceeeccCCcE
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH--SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~--vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~i 760 (1496)
|+++|+.| |.||||++.+|+++..+....+. +++..|++ .+ .+++.+.++..+
T Consensus 401 YvaAGS~d--------gsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~----------------sG-~~Llsadk~~~v 455 (459)
T KOG0288|consen 401 YVAAGSAD--------GSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP----------------SG-SGLLSADKQKAV 455 (459)
T ss_pred eeeeccCC--------CcEEEEEccCceEEEEeccCCCCcceEEEEEcC----------------CC-chhhcccCCcce
Confidence 99999999 99999999999999999887766 55555552 11 234466667778
Q ss_pred Eee
Q 000450 761 RQS 763 (1496)
Q Consensus 761 r~W 763 (1496)
..|
T Consensus 456 ~lW 458 (459)
T KOG0288|consen 456 TLW 458 (459)
T ss_pred Eec
Confidence 877
No 82
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=6e-16 Score=175.20 Aligned_cols=242 Identities=19% Similarity=0.195 Sum_probs=175.2
Q ss_pred eeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcE
Q 000450 458 VDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEI 537 (1496)
Q Consensus 458 ~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I 537 (1496)
-+|+..+ .++|. .+++++.+.+.-+|++....+ -.+..++.+|...|..+++.|+.. ++++++.|..+
T Consensus 226 EVWfl~F----S~nGk---yLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdr----yLlaCg~~e~~ 293 (519)
T KOG0293|consen 226 EVWFLQF----SHNGK---YLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDR----YLLACGFDEVL 293 (519)
T ss_pred cEEEEEE----cCCCe---eEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCC----eEEecCchHhe
Confidence 3565554 44562 367777888899999887655 467788999999999999444443 66666666666
Q ss_pred EEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEE
Q 000450 538 EVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV 616 (1496)
Q Consensus 538 ~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~ 616 (1496)
.+ ||+.++.....+ .+|...+.+++|.|| +..+++|+.|+++..||+.. +.+..
T Consensus 294 ~l---------------wDv~tgd~~~~y~~~~~~S~~sc~W~pD---------g~~~V~Gs~dr~i~~wdlDg-n~~~~ 348 (519)
T KOG0293|consen 294 SL---------------WDVDTGDLRHLYPSGLGFSVSSCAWCPD---------GFRFVTGSPDRTIIMWDLDG-NILGN 348 (519)
T ss_pred ee---------------ccCCcchhhhhcccCcCCCcceeEEccC---------CceeEecCCCCcEEEecCCc-chhhc
Confidence 55 446666665544 345578999999998 88999999999999999862 22211
Q ss_pred Ecc------------------------------------------cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000450 617 MHH------------------------------------------HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1496)
Q Consensus 617 ~~~------------------------------------------H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lW 654 (1496)
+.+ ...+|+++.++.+ +++++.-=.+..+.+|
T Consensus 349 W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d------~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKD------GKLALVNLQDQEIHLW 422 (519)
T ss_pred ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCC------CcEEEEEcccCeeEEe
Confidence 111 2245666666666 7777777778888899
Q ss_pred ECCCCcEEEEecCCCC--CcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeccc
Q 000450 655 SLETLRVERMFPGHPN--YPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI 731 (1496)
Q Consensus 655 dl~~~~~l~~~~gH~~--~V~~V~~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~ 731 (1496)
|+++.+.++.+.||.. .+-.-+|-. +..++++|+.| +.||||+.++|+++.++.||...+-++.+.|
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED--------~kvyIWhr~sgkll~~LsGHs~~vNcVswNP-- 492 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED--------SKVYIWHRISGKLLAVLSGHSKTVNCVSWNP-- 492 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC--------ceEEEEEccCCceeEeecCCcceeeEEecCC--
Confidence 9998888888889876 455556754 45899999998 9999999999999999999997666664443
Q ss_pred ccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 732 ~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
....-+-+.+.|++||+|-..
T Consensus 493 --------------~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 493 --------------ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred --------------CCHHHhhccCCCCeEEEecCC
Confidence 222223344569999999763
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=2.6e-16 Score=182.37 Aligned_cols=204 Identities=22% Similarity=0.217 Sum_probs=165.4
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+..-...|.+..+-+++. .+++|.+.|.|+| ++ ..+....+.+++|+.+|....|+|.
T Consensus 64 ~srFk~~v~s~~fR~DG~----LlaaGD~sG~V~v--fD-------------~k~r~iLR~~~ah~apv~~~~f~~~--- 121 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGR----LLAAGDESGHVKV--FD-------------MKSRVILRQLYAHQAPVHVTKFSPQ--- 121 (487)
T ss_pred HHhhccceeEEEeecCCe----EEEccCCcCcEEE--ec-------------cccHHHHHHHhhccCceeEEEeccc---
Confidence 445567888888777776 8899999999999 33 2223456778999999999999997
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVER 663 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~ 663 (1496)
++..|++|++|+.+++||+.+......+.+|+..|++.+|+|.. ++.++|||.||+|++||++.. ..+.
T Consensus 122 -----d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~-----~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 122 -----DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN-----DHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred -----CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC-----CeEEEecCCCceEEEEEeccCCceeE
Confidence 48899999999999999999998877899999999999999985 779999999999999999987 5556
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe-EEEEEeCCCCCceeeeeecccccccccceEEc
Q 000450 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGSVLN 742 (1496)
Q Consensus 664 ~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~-~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~ 742 (1496)
++. |..+|..|.+-|.|..+++++. ..|+|||+.+|. ++..+..|...+++..+.. +
T Consensus 192 eln-hg~pVe~vl~lpsgs~iasAgG---------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s------------~ 249 (487)
T KOG0310|consen 192 ELN-HGCPVESVLALPSGSLIASAGG---------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS------------D 249 (487)
T ss_pred Eec-CCCceeeEEEcCCCCEEEEcCC---------CeEEEEEecCCceehhhhhcccceEEEEEeec------------C
Confidence 654 9999999999999999998876 489999999654 4555555998888876551 1
Q ss_pred CCccccccceeeccCCcEEeecccc
Q 000450 743 GNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 743 g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
+.-..++++ |+.+|+++.-+
T Consensus 250 ~~rLlS~sL-----D~~VKVfd~t~ 269 (487)
T KOG0310|consen 250 STRLLSGSL-----DRHVKVFDTTN 269 (487)
T ss_pred CceEeeccc-----ccceEEEEccc
Confidence 233344444 99999887533
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.6e-16 Score=187.08 Aligned_cols=229 Identities=17% Similarity=0.159 Sum_probs=185.2
Q ss_pred eeecccccCccccccccCCCCCCCccccccc-CCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVH-KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~-h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
.+++...++.+.+||....+. ..++.+ |...|.+++ +....+.+|+.||.|.++.....
T Consensus 231 ~LavG~~~g~v~iwD~~~~k~----~~~~~~~h~~rvg~la------W~~~~lssGsr~~~I~~~dvR~~---------- 290 (484)
T KOG0305|consen 231 HLAVGTSDGTVQIWDVKEQKK----TRTLRGSHASRVGSLA------WNSSVLSSGSRDGKILNHDVRIS---------- 290 (484)
T ss_pred EEEEeecCCeEEEEehhhccc----cccccCCcCceeEEEe------ccCceEEEecCCCcEEEEEEecc----------
Confidence 377788889999999876544 344556 899999988 66668999999999998443310
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
. ....++.+|...|..+.|++| +.+|+||+.|+.+.|||.....++..+..|.+.|..++|+|-.
T Consensus 291 ---~-~~~~~~~~H~qeVCgLkws~d---------~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-- 355 (484)
T KOG0305|consen 291 ---Q-HVVSTLQGHRQEVCGLKWSPD---------GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-- 355 (484)
T ss_pred ---h-hhhhhhhcccceeeeeEECCC---------CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc--
Confidence 0 112248899999999999998 8999999999999999998889999999999999999999984
Q ss_pred CCCCCEEEEEe--CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 636 HPWSDCFLSVG--EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 636 ~~~g~~l~Sgs--~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
..+||+|+ .|++|++||..+++.+.... -.+.|..+.|++..+-|+++. |+++ +.|.||+..+.+++.
T Consensus 356 ---~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth----G~s~--n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 356 ---SGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTH----GYSE--NQITLWKYPSMKLVA 425 (484)
T ss_pred ---cCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEec----CCCC--CcEEEEeccccceee
Confidence 66899875 69999999999999988765 456799999999998887653 3344 789999999999999
Q ss_pred EEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
.+.||..+++.....+ + |...+ ..+.|.++|.|++..
T Consensus 426 ~l~gH~~RVl~la~SP----d--------g~~i~-----t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSP----D--------GETIV-----TGAADETLRFWNLFD 462 (484)
T ss_pred eecCCcceeEEEEECC----C--------CCEEE-----EecccCcEEeccccC
Confidence 9999999988774442 1 34433 444599999999743
No 85
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=1.3e-16 Score=192.46 Aligned_cols=231 Identities=16% Similarity=0.170 Sum_probs=179.5
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+++.+..+.+.+||+..... ..+...|.+|...++++.+.+ +.|+.|++|+.||.|++ || .
T Consensus 103 IAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~---tep~iliSGSQDg~vK~--~D-------------l 163 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHS---TEPNILISGSQDGTVKC--WD-------------L 163 (839)
T ss_pred heeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeecc---CCccEEEecCCCceEEE--Ee-------------e
Confidence 67778888999999987422 245567899999999988555 56789999999999999 33 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
...+.+.++.+....|..+.|+|. .+..++++...|.+++||++... +...|..|.++|.++.|+|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~--------~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn---- 231 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPG--------YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN---- 231 (839)
T ss_pred ecccccccccccchhhhceeeccC--------CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC----
Confidence 334566778888899999999996 37899999999999999998654 56788999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecC-CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEE
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMFPG-HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERV 714 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g-H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~ 714 (1496)
+.+|||||.|+.|+|||..+.+.-....- -..+|.+|+|.|+..+.+..|.- .. |-.|+|||++.. -..++
T Consensus 232 --r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm---v~--dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 232 --REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM---VV--DTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred --CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc---cc--cceEEEEeecccccccee
Confidence 89999999999999999987654322222 34689999999998876655532 12 378999999764 34678
Q ss_pred EeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEe
Q 000450 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1496)
Q Consensus 715 l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~ 762 (1496)
+..|+..+..++ |.......++.+.+|+++.+
T Consensus 305 ~~eH~~~vt~i~----------------W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 305 FLEHTDSVTGIA----------------WDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eeccCcccccee----------------ccCCCceeeEeecCccHHHH
Confidence 888887665553 33334556778888887775
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.68 E-value=5.2e-16 Score=185.54 Aligned_cols=214 Identities=21% Similarity=0.253 Sum_probs=170.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.....+..+.+|...+..| ..++.+|...|+|+....+. .+++|+-|.+.+||+-.
T Consensus 74 l~~g~~D~~i~v~~~~~~~P----~~~LkgH~snVC~ls~~~~~-----~~iSgSWD~TakvW~~~-------------- 130 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEP----LYTLKGHKSNVCSLSIGEDG-----TLISGSWDSTAKVWRIG-------------- 130 (745)
T ss_pred eEeecccceEEEEecCCCCc----hhhhhccccceeeeecCCcC-----ceEecccccceEEecch--------------
Confidence 44445566677888777655 56789999999998755444 48999999999994432
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
++...+.||+..|++++.-|+ +.++|||.|.+|++|.- ++++.+|.+|+.-|+.+++-|+
T Consensus 131 ---~l~~~l~gH~asVWAv~~l~e----------~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~----- 190 (745)
T KOG0301|consen 131 ---ELVYSLQGHTASVWAVASLPE----------NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD----- 190 (745)
T ss_pred ---hhhcccCCcchheeeeeecCC----------CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-----
Confidence 455668999999999999885 48999999999999984 8899999999999999999886
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
..|+|++.||.|++|++ +|+++..+.||.+.|.++...+++..+++++.| ++++||+.. ++..++.=
T Consensus 191 --~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED--------rtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 191 --SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED--------RTLRIWKKD--ECVQVITL 257 (745)
T ss_pred --CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCC--------ceEEEeecC--ceEEEEec
Confidence 47899999999999999 799999999999999999988888899999999 999999976 77777764
Q ss_pred CCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 718 h~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+-.+..+ .| +.+|+ ++.-++||.+|+|..
T Consensus 258 PttsiWsa-~~-----------L~NgD------Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 258 PTTSIWSA-KV-----------LLNGD------IVVGGSDGRVRVFTV 287 (745)
T ss_pred CccceEEE-EE-----------eeCCC------EEEeccCceEEEEEe
Confidence 33333333 11 11232 334445999999864
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.68 E-value=4.8e-16 Score=176.59 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=102.3
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc----CCCEEEEEECCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH----VAPVRQIILSPPQTE 635 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H----~~~V~~l~~sPd~~~ 635 (1496)
..+......|. .|++|..+++ +..+.+++.|.++.+.|+++.+..+.|... ...++.+.|+|+
T Consensus 332 ~~~~~sv~~gg-~vtSl~ls~~---------g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd--- 398 (459)
T KOG0288|consen 332 ADKTRSVPLGG-RVTSLDLSMD---------GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD--- 398 (459)
T ss_pred CceeeEeecCc-ceeeEeeccC---------CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC---
Confidence 34444444443 8999999887 788888899999999999999988887653 234889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC--CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~--~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
+.++++||.||+|.||++.++++...+..... .|+++.|+|.|.+|++++.+ +.+.+|
T Consensus 399 ---~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~--------~~v~lW 458 (459)
T KOG0288|consen 399 ---GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ--------KAVTLW 458 (459)
T ss_pred ---CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC--------cceEec
Confidence 89999999999999999999999988765544 59999999999999999888 999999
No 88
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=9.7e-14 Score=166.24 Aligned_cols=233 Identities=11% Similarity=0.061 Sum_probs=164.0
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEE-EecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVI-QFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~-~~~~l~~~d~~~~~~d 556 (1496)
+...+..|-.++|...++..- .....+.||.+.|+.+.+.+..- ++++.+.|-+-+++ +|. ....|.
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w-~~~~~iSGH~~~V~dv~W~psGe----flLsvs~DQTTRlFa~wg-------~q~~wH 398 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFW-TQEPVISGHVDGVKDVDWDPSGE----FLLSVSLDQTTRLFARWG-------RQQEWH 398 (764)
T ss_pred EEEecccCcEEEEeccCccce-eeccccccccccceeeeecCCCC----EEEEeccccceeeecccc-------ccccee
Confidence 445567788889984332111 22234689999999998444433 89999999999984 331 111122
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC--------------------------
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-------------------------- 610 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t-------------------------- 610 (1496)
- +..-+-|....+|+++-+. ...++||.....+|+++...
T Consensus 399 E-----iaRPQiHGyDl~c~~~vn~---------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V 464 (764)
T KOG1063|consen 399 E-----IARPQIHGYDLTCLSFVNE---------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV 464 (764)
T ss_pred e-----ecccccccccceeeehccC---------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence 1 1112346778999999773 46789999999999998741
Q ss_pred -----------------Cc---------------------------------eEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 611 -----------------GN---------------------------------LITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 611 -----------------g~---------------------------------~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
|. .++++.+|...|.+++.+|+ ++
T Consensus 465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~------gn 538 (764)
T KOG1063|consen 465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT------GN 538 (764)
T ss_pred ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC------CC
Confidence 00 11245689999999999999 99
Q ss_pred EEEEEeCC-----CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE-EEE
Q 000450 641 CFLSVGED-----FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR-ERV 714 (1496)
Q Consensus 641 ~l~Sgs~D-----gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~-~~~ 714 (1496)
.++|++.. .-|+||+..+....+.+.+|.-.|+.++|||||+||++.|+| .++.+|....... ...
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD--------Rt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD--------RTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC--------ceEEeeeeecccchhhh
Confidence 99999864 457999999988888999999999999999999999999999 9999998754322 222
Q ss_pred ---EeCCCCCceeeeeecccccccccceEEcCCcccccc-ceeeccCCcEEeeccccc
Q 000450 715 ---LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL-LLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 715 ---l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~-l~~~~~D~~ir~W~l~~~ 768 (1496)
+..|+- ++.+-++..... +++.++|.++++|.....
T Consensus 611 fa~~k~HtR------------------IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 611 FACLKAHTR------------------IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hccccccce------------------EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 334442 222222333333 788999999999987443
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=2.8e-16 Score=186.36 Aligned_cols=234 Identities=13% Similarity=0.146 Sum_probs=185.2
Q ss_pred eecccccCccccccccCCCC--CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~--~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
+.++..++.+++|+...... .......+..|.+-|+.+....... .+++++.|-+|++|+-.
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~----tlIS~SsDtTVK~W~~~------------ 103 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK----TLISASSDTTVKVWNAH------------ 103 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC----ceEEecCCceEEEeecc------------
Confidence 45556778888998764332 2234667788988888776555554 79999999999994433
Q ss_pred ccCCcceEEEEecCCccEEEEEE-ecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc--eEEEE--------c-ccCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAA-HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--LITVM--------H-HHVAP 623 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~-spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~--~l~~~--------~-~H~~~ 623 (1496)
....-+..++..|++.|.||++ .++ ..+++|||-|+.|.+||+++|. .++++ . ++..+
T Consensus 104 -~~~~~c~stir~H~DYVkcla~~ak~---------~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 104 -KDNTFCMSTIRTHKDYVKCLAYIAKN---------NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred -cCcchhHhhhhcccchheeeeecccC---------ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 1111456778899999999999 554 7899999999999999999883 33332 2 78889
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEE
Q 000450 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 703 (1496)
Q Consensus 624 V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~V 703 (1496)
|++++.++. |..|++|+..+.+++||.++++.+..+.||...|..+..++||..+++++.| |+|++
T Consensus 174 iYSLA~N~t------~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD--------gtIrl 239 (735)
T KOG0308|consen 174 IYSLAMNQT------GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD--------GTIRL 239 (735)
T ss_pred eeeeecCCc------ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCC--------ceEEe
Confidence 999999998 8899999999999999999999999999999999999999999999999998 99999
Q ss_pred EECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccc
Q 000450 704 WDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 704 WDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
||+..++++.++.-|...+......+. -..++.-.+|+.+..=+|.+.
T Consensus 240 WdLgqQrCl~T~~vH~e~VWaL~~~~s-----------------f~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 240 WDLGQQRCLATYIVHKEGVWALQSSPS-----------------FTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeccccceeeeEEeccCceEEEeeCCC-----------------cceEEecCCCCcEEecccCCc
Confidence 999999999999999988777632211 112344455777777666655
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=2e-16 Score=190.86 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=153.8
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 526 ~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
+.|++++.+|.|.+|+.... -..+.+..|..|+..|+++.||+.+ ..+|+|||.||+|++
T Consensus 101 NlIAT~s~nG~i~vWdlnk~------------~rnk~l~~f~EH~Rs~~~ldfh~te--------p~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKS------------IRNKLLTVFNEHERSANKLDFHSTE--------PNILISGSQDGTVKC 160 (839)
T ss_pred hhheeecCCCcEEEEecCcc------------ccchhhhHhhhhccceeeeeeccCC--------ccEEEecCCCceEEE
Confidence 47999999999999554410 1124556788999999999999863 789999999999999
Q ss_pred EECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCEE
Q 000450 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRGYI 684 (1496)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~~~~gH~~~V~~V~~spdg~~L 684 (1496)
||++..+-..++.+....|+.|.|+|.. +..|+++.+.|.+.+||++. .++...+..|.++|.++.|+|++.+|
T Consensus 161 ~DlR~~~S~~t~~~nSESiRDV~fsp~~-----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 161 WDLRSKKSKSTFRSNSESIRDVKFSPGY-----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred EeeecccccccccccchhhhceeeccCC-----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence 9999999999999999999999999975 88999999999999999985 46788899999999999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CCceeeeeecccccccccceEEcCCccccccceeeccCCcEEee
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA-SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 763 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~-a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W 763 (1496)
+||++| +.|+|||+.+++.-....-++ +.+-.+.+-|+-..+. ++..+ .-|..+++|
T Consensus 236 ATGGRD--------K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hL-----------Atcsm---v~dtsV~VW 293 (839)
T KOG0269|consen 236 ATGGRD--------KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHL-----------ATCSM---VVDTSVHVW 293 (839)
T ss_pred eecCCC--------ccEEEEeccCCCccceeEEeecceeeeeeeccCccchh-----------hhhhc---cccceEEEE
Confidence 999999 999999998765533333233 3455555654333221 11111 227789999
Q ss_pred cc
Q 000450 764 QI 765 (1496)
Q Consensus 764 ~l 765 (1496)
++
T Consensus 294 Dv 295 (839)
T KOG0269|consen 294 DV 295 (839)
T ss_pred ee
Confidence 96
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=2.3e-15 Score=166.28 Aligned_cols=206 Identities=18% Similarity=0.191 Sum_probs=157.6
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~ 582 (1496)
..+..|...+++++ .+-.++|+|+.|-+|+|++.. .......+..|.+.|++|.|.+..
T Consensus 37 F~~~aH~~sitavA------Vs~~~~aSGssDetI~IYDm~---------------k~~qlg~ll~HagsitaL~F~~~~ 95 (362)
T KOG0294|consen 37 FAFSAHAGSITALA------VSGPYVASGSSDETIHIYDMR---------------KRKQLGILLSHAGSITALKFYPPL 95 (362)
T ss_pred ccccccccceeEEE------ecceeEeccCCCCcEEEEecc---------------chhhhcceeccccceEEEEecCCc
Confidence 34678999999998 333479999999999994332 345567788899999999998762
Q ss_pred CCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000450 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1496)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l 662 (1496)
...+|+||+.||.|.+|+.....++..+++|.+.|+.++++|. +++.++++.|+.+++||+-+|+.-
T Consensus 96 -------S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS------~KLALsVg~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 96 -------SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS------GKLALSVGGDQVLRTWNLVRGRVA 162 (362)
T ss_pred -------chhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC------CceEEEEcCCceeeeehhhcCccc
Confidence 1349999999999999999999999999999999999999998 899999999999999999887643
Q ss_pred EEecCCCCCcEEEEEcCCCC---------------------------------------EEEEEEcCCCCCCCCCCEEEE
Q 000450 663 RMFPGHPNYPAKVVWDCPRG---------------------------------------YIACLCRDHSRTSDAVDVLFI 703 (1496)
Q Consensus 663 ~~~~gH~~~V~~V~~spdg~---------------------------------------~L~tgs~D~sg~~D~dg~V~V 703 (1496)
..++- ....+-|.|+|.|. +|++|..| +.|.+
T Consensus 163 ~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~--------~~i~~ 233 (362)
T KOG0294|consen 163 FVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDN--------EWISL 233 (362)
T ss_pred eeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCC--------ceEEE
Confidence 33321 11122355555554 44444444 88999
Q ss_pred EECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 704 WDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 704 WDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
||...+.+...+.+|.+++-...+.. +. ....++++++||.|++|++.
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~----~~-----------~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYT----NP-----------EHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEe----cC-----------CceEEEEeccCceEEEEEcc
Confidence 99888888888889988877653331 00 11346678889999999973
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.67 E-value=5.2e-16 Score=170.10 Aligned_cols=222 Identities=16% Similarity=0.242 Sum_probs=169.3
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC--CccccC-CcceEEEEecCCccEEEE
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG--ASLKVN-SHVSRQYFLGHTGAVLCL 576 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~--~~~d~~-s~~~~~~l~gH~~~V~~L 576 (1496)
.+...+..|...+.+-+|.++.. .+++|+.|-+|+|..-..+..-..+. ..-+.+ ....+++|+.|...|++|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~----lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS----LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc----EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 34455788999999988666655 89999999999996543221110000 011122 236789999999999999
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~--~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lW 654 (1496)
.|||. ...|+||+.|++|+++|+......+-|+ ....+|.++.|+|. |.+++.|..-.++++|
T Consensus 179 ~FHPr---------e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs------GefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 179 DFHPR---------ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS------GEFLLVGTDHPTLRLY 243 (430)
T ss_pred eecch---------hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC------CceEEEecCCCceeEE
Confidence 99997 7999999999999999997654333222 34668999999998 9999999999999999
Q ss_pred ECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCCCceee-eeec
Q 000450 655 SLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGTASHSMFD-HFCK 729 (1496)
Q Consensus 655 dl~~~~~l~~~---~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l-~gh~a~vi~~-~~~~ 729 (1496)
|+.+.+|.... .+|.+.|++|.+++.+++-++++.| |.|++||--++++++++ +.|.+..++. .|.
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD--------G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft- 314 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD--------GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT- 314 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccC--------CcEEeeccccHHHHHHHHhhcCCceeeeEEEc-
Confidence 99999987665 3688999999999999999999999 99999999999998877 4566666553 233
Q ss_pred ccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 730 ~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
-+|.+.. +...|..++.|.+
T Consensus 315 -----------kn~kyiL-----sSG~DS~vkLWEi 334 (430)
T KOG0640|consen 315 -----------KNGKYIL-----SSGKDSTVKLWEI 334 (430)
T ss_pred -----------cCCeEEe-----ecCCcceeeeeee
Confidence 1244433 3334889999987
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.66 E-value=1.8e-14 Score=158.55 Aligned_cols=85 Identities=22% Similarity=0.404 Sum_probs=69.6
Q ss_pred CCCCCceEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccc
Q 000450 12 GTPPSHRVTATSALT-QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAEN 90 (1496)
Q Consensus 12 ~~~psh~Vtava~Sp-Dg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~ 90 (1496)
+.||...|++++||| ...+++.|+-||+|++|++.. .+...++ ....|.++|-+++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~--~g~~~~k-a~~~~~~PvL~v~-------------------- 79 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQN--SGQLVPK-AQQSHDGPVLDVC-------------------- 79 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEec--CCcccch-hhhccCCCeEEEE--------------------
Confidence 457889999999999 456677999999999999984 2334443 3467999999998
Q ss_pred cccccccccCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 000450 91 SSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRR 126 (1496)
Q Consensus 91 ~~~~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~ 126 (1496)
++.|+..+++|+.|+.+++||+.+|+...
T Consensus 80 -------WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 80 -------WSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred -------EccCCceEEeeccCCceEEEEccCCCeee
Confidence 57778889999999999999999986543
No 94
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.65 E-value=1.9e-15 Score=174.36 Aligned_cols=192 Identities=18% Similarity=0.244 Sum_probs=154.6
Q ss_pred eeecccccCccccccccCCCCC---CCcccccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCC
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQA---GDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNS 550 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~---~~~~~~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~ 550 (1496)
.+..++.++.+++||+...... ......+.+|...|.-++ |+|. .+.+.+.|+.+.| ||+..
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~------~h~~h~~lF~sv~dd~~L~i--wD~R~---- 259 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVA------WHPLHEDLFGSVGDDGKLMI--WDTRS---- 259 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhh------ccccchhhheeecCCCeEEE--EEcCC----
Confidence 4666777888999998765442 244556788988888876 6653 7888899999999 55211
Q ss_pred CCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEEcccCCCEEEEEE
Q 000450 551 PGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIIL 629 (1496)
Q Consensus 551 ~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~H~~~V~~l~~ 629 (1496)
+ +.++.....+|++.|+|++|+|- ++.+||+||.|++|++||+++. +++++|.+|...|.+|.|
T Consensus 260 ----~---~~~~~~~~~ah~~~vn~~~fnp~--------~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W 324 (422)
T KOG0264|consen 260 ----N---TSKPSHSVKAHSAEVNCVAFNPF--------NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW 324 (422)
T ss_pred ----C---CCCCcccccccCCceeEEEeCCC--------CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEe
Confidence 1 34566677899999999999996 3789999999999999999975 478999999999999999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCC--------------cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCC
Q 000450 630 SPPQTEHPWSDCFLSVGEDFSVALASLETL--------------RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS 695 (1496)
Q Consensus 630 sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~--------------~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~ 695 (1496)
+|.. ..+|+|.+.|+.+.+||+..- +.+.+-.||.+.|..+.|+|...++++.-.+
T Consensus 325 SPh~-----etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae----- 394 (422)
T KOG0264|consen 325 SPHN-----ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE----- 394 (422)
T ss_pred CCCC-----CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC-----
Confidence 9985 679999999999999999631 2346667999999999999999987765554
Q ss_pred CCCCEEEEEECC
Q 000450 696 DAVDVLFIWDVK 707 (1496)
Q Consensus 696 D~dg~V~VWDl~ 707 (1496)
|+.+.||++.
T Consensus 395 --DN~LqIW~~s 404 (422)
T KOG0264|consen 395 --DNILQIWQMA 404 (422)
T ss_pred --CceEEEeecc
Confidence 3999999984
No 95
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2e-16 Score=189.44 Aligned_cols=183 Identities=21% Similarity=0.242 Sum_probs=163.9
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
.+.+|...|.++.+..... .++.|+.+|+|++ || .+..+.+++|.||...+..+.|+|-
T Consensus 65 S~~~hespIeSl~f~~~E~----LlaagsasgtiK~--wD-------------leeAk~vrtLtgh~~~~~sv~f~P~-- 123 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSER----LLAAGSASGTIKV--WD-------------LEEAKIVRTLTGHLLNITSVDFHPY-- 123 (825)
T ss_pred eeeccCCcceeeecCcchh----hhcccccCCceee--ee-------------hhhhhhhhhhhccccCcceeeeccc--
Confidence 4789999999998544444 8899999999999 44 4455778899999999999999995
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~ 663 (1496)
+.+.++|+.|+.+++||++...|.+.+.+|...|..+.|+|+ |.+++++++|.++++||+..|+...
T Consensus 124 -------~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~------Gr~v~~g~ed~tvki~d~~agk~~~ 190 (825)
T KOG0267|consen 124 -------GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD------GRWVASGGEDNTVKIWDLTAGKLSK 190 (825)
T ss_pred -------eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCC------CceeeccCCcceeeeeccccccccc
Confidence 888999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 664 ~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
.|.+|...+..+.|+|..-.++.|+.| ++|++||++|.+.+-........+.+..|.
T Consensus 191 ef~~~e~~v~sle~hp~e~Lla~Gs~d--------~tv~f~dletfe~I~s~~~~~~~v~~~~fn 247 (825)
T KOG0267|consen 191 EFKSHEGKVQSLEFHPLEVLLAPGSSD--------RTVRFWDLETFEVISSGKPETDGVRSLAFN 247 (825)
T ss_pred ccccccccccccccCchhhhhccCCCC--------ceeeeeccceeEEeeccCCccCCceeeeec
Confidence 999999999999999999999999888 999999999998887777766666666555
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.64 E-value=6.2e-15 Score=168.28 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=158.7
Q ss_pred ccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
.+..+-++|... .+...++.||...|+++.+.++.. .++.++.|..|+||.-. ....
T Consensus 239 ~d~~av~~d~~s----~q~l~~~~Gh~kki~~v~~~~~~~----~v~~aSad~~i~vws~~---------------~~s~ 295 (506)
T KOG0289|consen 239 EDKTAVLFDKPS----NQILATLKGHTKKITSVKFHKDLD----TVITASADEIIRVWSVP---------------LSSE 295 (506)
T ss_pred CCCceEEEecch----hhhhhhccCcceEEEEEEeccchh----heeecCCcceEEeeccc---------------cccC
Confidence 334455555433 477888999999999998333332 78899999999994322 1224
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccC--CCEEEEEECCCCCCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV--APVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~--~~V~~l~~sPd~~~~~~g~ 640 (1496)
......|.++|+.+..+|. +.+|+++++|++..+-|+++|.++......+ -.+++..|+|| |.
T Consensus 296 ~~~~~~h~~~V~~ls~h~t---------geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD------gL 360 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPT---------GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD------GL 360 (506)
T ss_pred ccccccccccceeeeeccC---------CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC------ce
Confidence 4566789999999999997 8999999999999999999999887766532 24899999999 99
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
+|.+|..|+.|++||+.++..+..|++|.++|..|+|+.+|-||++++.| +.|++||++.-+...++.-..
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add--------~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD--------GSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC--------CeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999 899999999877777666544
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.64 E-value=5.1e-16 Score=166.15 Aligned_cols=208 Identities=19% Similarity=0.193 Sum_probs=164.8
Q ss_pred CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEE
Q 000450 498 AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1496)
Q Consensus 498 ~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La 577 (1496)
.|..+.+|.+|.+.|++..+..... +.++++.|-+-+| |+ .-++..+..| .|...|.+++
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~----~aasaaadftakv--w~-------------a~tgdelhsf-~hkhivk~~a 107 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNAT----RAASAAADFTAKV--WD-------------AVTGDELHSF-EHKHIVKAVA 107 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhh----hhhhhcccchhhh--hh-------------hhhhhhhhhh-hhhheeeeEE
Confidence 3578899999999999976555544 6778888888777 44 4455545544 4888999999
Q ss_pred EecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
|+.| .+.|++|+.+..+|++|++..+ +...+.+|.+.|..+.|... .++|+|.+.|++||+||.
T Consensus 108 f~~d---------s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e------D~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 108 FSQD---------SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE------DKCILSSADDKTVRLWDH 172 (334)
T ss_pred eccc---------chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc------CceEEeeccCCceEEEEe
Confidence 9997 7899999999999999998765 56889999999999999987 789999999999999999
Q ss_pred CCCcEEEEecC----------CC-----------------------------CCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000450 657 ETLRVERMFPG----------HP-----------------------------NYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 657 ~~~~~l~~~~g----------H~-----------------------------~~V~~V~~spdg~~L~tgs~D~sg~~D~ 697 (1496)
+++..++++.- |. ..|.+...+|+..++++|+.|
T Consensus 173 rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged------- 245 (334)
T KOG0278|consen 173 RTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGED------- 245 (334)
T ss_pred ccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcc-------
Confidence 99987766531 11 124445567777777787777
Q ss_pred CCEEEEEECCCCeEEEEE-eCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 698 VDVLFIWDVKTGARERVL-RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 698 dg~V~VWDl~tg~~~~~l-~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
..++.||..||+.+-.+ .||-+++.++.|.|. |..-.+++ +||++|+|+.
T Consensus 246 -~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd------------GE~yAsGS-----EDGTirlWQt 296 (334)
T KOG0278|consen 246 -FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD------------GELYASGS-----EDGTIRLWQT 296 (334)
T ss_pred -eEEEEEeccCCceeeecccCCCCceEEEEECCC------------CceeeccC-----CCceEEEEEe
Confidence 99999999999988775 999999999988852 33333333 4999999985
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.64 E-value=1.8e-15 Score=165.80 Aligned_cols=177 Identities=16% Similarity=0.266 Sum_probs=148.9
Q ss_pred CcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEE
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La 577 (1496)
..+.++..|.+.|+.+. |+|. .|++|+.|++|+++++.. . .. .+..+.+. ...+|.++.
T Consensus 163 PvIRTlYDH~devn~l~------FHPre~ILiS~srD~tvKlFDfsK--~--------sa--KrA~K~~q-d~~~vrsiS 223 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLD------FHPRETILISGSRDNTVKLFDFSK--T--------SA--KRAFKVFQ-DTEPVRSIS 223 (430)
T ss_pred ceEeehhhccCccccee------ecchhheEEeccCCCeEEEEeccc--H--------HH--HHHHHHhh-ccceeeeEe
Confidence 46778889999999998 7775 899999999999955541 0 00 01122222 346799999
Q ss_pred EecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEE---cccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000450 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM---HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1496)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~---~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lW 654 (1496)
|||. |.+|+.|....++++||+++.++...- ..|++.|++|.+++. +++.++++.||.|+||
T Consensus 224 fHPs---------GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t------~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 224 FHPS---------GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST------GSLYVTASKDGAIKLW 288 (430)
T ss_pred ecCC---------CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC------ccEEEEeccCCcEEee
Confidence 9996 899999999999999999998876443 469999999999998 9999999999999999
Q ss_pred ECCCCcEEEEec-CCCC-CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 655 SLETLRVERMFP-GHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 655 dl~~~~~l~~~~-gH~~-~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
|--.++|+.++. .|.+ .|.+..|+.+++|+++.+.| ..|++|++.||+++.++.|-
T Consensus 289 DGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D--------S~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 289 DGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD--------STVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc--------ceeeeeeecCCceEEEEecC
Confidence 999999999884 4654 78999999999999999998 99999999999999999885
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.8e-15 Score=160.54 Aligned_cols=198 Identities=18% Similarity=0.226 Sum_probs=157.6
Q ss_pred ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEE-ecCCCCcccCcCCCEEEEEeCCC
Q 000450 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA-HRMVGTAKGWSFNEVLVSGSMDC 601 (1496)
Q Consensus 523 f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~-spd~~~~~~~~~~~~L~SGs~Dg 601 (1496)
|...+|+++++|++|+|+.-. . -...+.+..|.||.++|+.++| ||. +|.+|+|++.|+
T Consensus 21 yygkrlATcsSD~tVkIf~v~--~----------n~~s~ll~~L~Gh~GPVwqv~wahPk--------~G~iLAScsYDg 80 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVR--N----------NGQSKLLAELTGHSGPVWKVAWAHPK--------FGTILASCSYDG 80 (299)
T ss_pred hhcceeeeecCCccEEEEEEc--C----------CCCceeeeEecCCCCCeeEEeecccc--------cCcEeeEeecCc
Confidence 444499999999999994332 1 1112677889999999999999 775 599999999999
Q ss_pred cEEEEECCCCc--eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEecCCCCCcEEEE
Q 000450 602 SIRIWDLGSGN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKVV 676 (1496)
Q Consensus 602 tV~lWDl~tg~--~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~---~~l~~~~gH~~~V~~V~ 676 (1496)
.|.||.-..|+ ..+.+..|...|++|+|.|.+. |-.|++++.||.|.|.+.++. ...+....|.-.|++|+
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey----gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY----GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeeccccccc----ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 99999988774 4467788999999999999742 668999999999999998754 22345567999999999
Q ss_pred EcCC---C-----------CEEEEEEcCCCCCCCCCCEEEEEECCCC--eEEEEEeCCCCCceeeeeecccccccccceE
Q 000450 677 WDCP---R-----------GYIACLCRDHSRTSDAVDVLFIWDVKTG--ARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1496)
Q Consensus 677 ~spd---g-----------~~L~tgs~D~sg~~D~dg~V~VWDl~tg--~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v 740 (1496)
|.|. | +.|++|+.| ..|+||+...+ .++++|.+|+.-+--+.+||.+.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcD--------n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g-------- 220 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCD--------NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG-------- 220 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCc--------cceeeeecCCcchhhhhhhhhcchhhhhhhhccccC--------
Confidence 9986 4 568999988 99999999876 45788999998877777885322
Q ss_pred EcCCccccccceeeccCCcEEeecc
Q 000450 741 LNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 741 ~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.....+.++++|+++-+|..
T Consensus 221 -----l~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 221 -----LPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred -----CCceeeEEecCCCcEEEEEe
Confidence 12334557778999999974
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.63 E-value=1.7e-15 Score=170.34 Aligned_cols=168 Identities=24% Similarity=0.297 Sum_probs=133.9
Q ss_pred CcccccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEE
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCL 576 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L 576 (1496)
..+.++.+|.+.=.++. |+|. ++++|-.-+.|.+ |..-. ..|.+. .+.+.+|+..|-.|
T Consensus 202 ~Pl~t~~ghk~EGy~Ld------WSp~~~g~LlsGDc~~~I~l--w~~~~------g~W~vd----~~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLD------WSPIKTGRLLSGDCVKGIHL--WEPST------GSWKVD----QRPFTGHTKSVEDL 263 (440)
T ss_pred CceEEecccCccceeee------cccccccccccCccccceEe--eeecc------Cceeec----Cccccccccchhhh
Confidence 45667788888888887 6663 5777766677777 44211 125443 23466899999999
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEE
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~l 653 (1496)
.|+|.+ ...|+|||.|++|+|||++.+ .++.+ +.|.+.|+.|.|+.+ -.+|++|+.||+++|
T Consensus 264 qWSptE--------~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~------~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 264 QWSPTE--------DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRR------EPLLASGGDDGTLSI 328 (440)
T ss_pred ccCCcc--------CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCC------cceeeecCCCceEEE
Confidence 999973 789999999999999999988 34444 889999999999987 459999999999999
Q ss_pred EECCC---CcEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 654 ASLET---LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 654 Wdl~~---~~~l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
||++. ++++..|..|..+|++|.|+|.. ..+++++.| ..|.+||+..
T Consensus 329 wDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D--------~QitiWDlsv 379 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED--------NQITIWDLSV 379 (440)
T ss_pred EEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC--------CcEEEEEeec
Confidence 99985 56889999999999999999965 466667776 8999999853
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4e-14 Score=157.48 Aligned_cols=234 Identities=15% Similarity=0.187 Sum_probs=172.1
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEc--CCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF--SGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~--dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
+.+++.+..++++|..+.+. ..++..+.-.+....+..... .++.++. |.+|+..
T Consensus 29 litss~dDsl~LYd~~~g~~----~~ti~skkyG~~~~~Fth~~~----~~i~sStk~d~tIryL--------------- 85 (311)
T KOG1446|consen 29 LITSSEDDSLRLYDSLSGKQ----VKTINSKKYGVDLACFTHHSN----TVIHSSTKEDDTIRYL--------------- 85 (311)
T ss_pred EEEecCCCeEEEEEcCCCce----eeEeecccccccEEEEecCCc----eEEEccCCCCCceEEE---------------
Confidence 44556777899999887544 333333433444555444443 7777776 7777762
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
+..+.+.++.+.||...|+.|..+|. +..++|+|.|++|++||++..++...+..-..+| ++|.|+
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~---------~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~--- 151 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPK---------DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPE--- 151 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCC---------CCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCC---
Confidence 24456899999999999999999997 7999999999999999999999988887666655 678998
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC--cEEEEecC---CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 636 HPWSDCFLSVGEDFSVALASLETL--RVERMFPG---HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~--~~l~~~~g---H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
|-+||.+.....|+|||++.. .+-.+|.- -....+.+.|+|||++|+.+... +.+++-|.-+|.
T Consensus 152 ---GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--------s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 152 ---GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--------SFIYLLDAFDGT 220 (311)
T ss_pred ---CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC--------CcEEEEEccCCc
Confidence 889999988889999999864 34455543 35578999999999999998887 899999999999
Q ss_pred EEEEEeCCCCCc-eeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccc
Q 000450 711 RERVLRGTASHS-MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAF 774 (1496)
Q Consensus 711 ~~~~l~gh~a~v-i~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~ 774 (1496)
....+.++.... +...+| ..++ +-.+ +..+.|+++.+|+++..+.....
T Consensus 221 ~~~tfs~~~~~~~~~~~a~--ftPd--s~Fv-----------l~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSAT--FTPD--SKFV-----------LSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred EeeeEeeccCCCCcceeEE--ECCC--CcEE-----------EEecCCCcEEEEEcCCCcEeeEe
Confidence 999999988644 112222 1111 2222 23334899999998655544333
No 102
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.62 E-value=3e-14 Score=154.32 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=164.2
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+++|..+++.+.|..+.. .|.+++.|....||. ...|+.+.++.||++.|+|+...-+
T Consensus 6 l~GHERplTqiKyN~eGD----LlFscaKD~~~~vw~---------------s~nGerlGty~GHtGavW~~Did~~--- 63 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD----LLFSCAKDSTPTVWY---------------SLNGERLGTYDGHTGAVWCCDIDWD--- 63 (327)
T ss_pred cccCccccceEEecCCCc----EEEEecCCCCceEEE---------------ecCCceeeeecCCCceEEEEEecCC---
Confidence 578999999999777665 899999999999943 2246788999999999999999876
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-----CCcEEEEECC--
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-----DFSVALASLE-- 657 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-----DgsV~lWdl~-- 657 (1496)
...|++|+.|.++++||+++|+++..++. ..+|..+.|+++ |++++.... -+.|.++|++
T Consensus 64 ------s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~------gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 64 ------SKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFG------GNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred ------cceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccC------CcEEEEEehhhcCcceEEEEEEccCC
Confidence 78999999999999999999999999975 458999999998 776655533 4688999998
Q ss_pred -----CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeeccc
Q 000450 658 -----TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGI 731 (1496)
Q Consensus 658 -----~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~ 731 (1496)
..++...++.+.+.++.+.|.|.+++|++|..| |.|.+||+++| +.+..-.-|.+.+.-.++.+.
T Consensus 131 ~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~--------G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d- 201 (327)
T KOG0643|consen 131 SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED--------GSISIYDARTGKELVDSDEEHSSKINDLQFSRD- 201 (327)
T ss_pred hhhhcccCceEEecCCccceeeeeecccCCEEEEecCC--------CcEEEEEcccCceeeechhhhccccccccccCC-
Confidence 456788888899999999999999999999998 99999999998 456666778875555544421
Q ss_pred ccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 732 ~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
. ..++..++|.+-+.|+..
T Consensus 202 -----~-----------T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 202 -----R-----------TYFITGSKDTTAKLVDVR 220 (327)
T ss_pred -----c-----------ceEEecccCccceeeecc
Confidence 1 123445568888888753
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.61 E-value=3.1e-15 Score=160.20 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=151.2
Q ss_pred cccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000450 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1496)
Q Consensus 482 ~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1496)
+.+=+.++||.... ....+| .|...|.+++|..+.. +|++|+.+.-++|++.+.. ..
T Consensus 78 aadftakvw~a~tg----delhsf-~hkhivk~~af~~ds~----~lltgg~ekllrvfdln~p--------------~A 134 (334)
T KOG0278|consen 78 AADFTAKVWDAVTG----DELHSF-EHKHIVKAVAFSQDSN----YLLTGGQEKLLRVFDLNRP--------------KA 134 (334)
T ss_pred cccchhhhhhhhhh----hhhhhh-hhhheeeeEEecccch----hhhccchHHHhhhhhccCC--------------CC
Confidence 44557789998764 445554 4788899999777776 8999999999999544311 12
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC------
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE------ 635 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~------ 635 (1496)
+...+.||++.|..+.|... .+.++|.+.|++||+||.++|+..+++.- ..+|+++.+++++.+
T Consensus 135 pp~E~~ghtg~Ir~v~wc~e---------D~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g 204 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHE---------DKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG 204 (334)
T ss_pred CchhhcCCCCcceeEEEecc---------CceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC
Confidence 34567899999999999764 57788889999999999999998877643 335666666665322
Q ss_pred ----------------------------CCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCCEEEE
Q 000450 636 ----------------------------HPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 636 ----------------------------~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-~gH~~~V~~V~~spdg~~L~t 686 (1496)
+|....+++|++|..+..||..++..+..+ .||.++|.||.|+|||..-++
T Consensus 205 ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred ceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence 466789999999999999999999998886 899999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 687 LCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 687 gs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
|+.| |+|++|++..++.
T Consensus 285 GSED--------GTirlWQt~~~~~ 301 (334)
T KOG0278|consen 285 GSED--------GTIRLWQTTPGKT 301 (334)
T ss_pred cCCC--------ceEEEEEecCCCc
Confidence 9999 9999999876654
No 104
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.60 E-value=1.1e-14 Score=182.96 Aligned_cols=190 Identities=23% Similarity=0.287 Sum_probs=158.1
Q ss_pred CccEEEEEeeccccccCCEEEEEE--cCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGF--FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs--~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1496)
...|.++.+.++.. ++++|+ .||.++||+-+.+... ...++..-.+.+.+...|.+.|+|+.|+||
T Consensus 13 ~~~IfSIdv~pdg~----~~aTgGq~~d~~~~iW~~~~vl~~---~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d----- 80 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGV----KFATGGQVLDGGIVIWSQDPVLDE---KEEKNENLPKHLCTMDDHDGSVNCVRFSPD----- 80 (942)
T ss_pred CeeEEEEEecCCce----eEecCCccccccceeeccccccch---hhhhhcccchhheeeccccCceeEEEECCC-----
Confidence 34577887555554 899999 8999999765533221 111222223556778899999999999998
Q ss_pred cCcCCCEEEEEeCCCcEEEEECCC------------------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 587 GWSFNEVLVSGSMDCSIRIWDLGS------------------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 587 ~~~~~~~L~SGs~DgtV~lWDl~t------------------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
+++||+||+|+.|.+|+... .++..++.+|.+.|..+.|+|+ +.+++|++.|
T Consensus 81 ----G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~------~~~lvS~s~D 150 (942)
T KOG0973|consen 81 ----GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD------DSLLVSVSLD 150 (942)
T ss_pred ----CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC------ccEEEEeccc
Confidence 99999999999999999872 1367889999999999999999 8999999999
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
++|.+||.++.+++..+.+|.+.|..+.|.|-|+|+++-+.| ++|+||++.+...++.++++-.+.....+.
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD--------rtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDD--------RTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCC--------ceEEEEEcccceeeEeeccchhhCCCccee
Confidence 999999999999999999999999999999999999999998 999999988888999999988766654443
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=2.1e-14 Score=157.59 Aligned_cols=210 Identities=12% Similarity=0.208 Sum_probs=164.0
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEE----ecccccC-----
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQ----FDLFERH----- 548 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~----~~~l~~~----- 548 (1496)
+.+.+.+-+.++|.++.. .+..++.+|.+.|+++.+.+... .+++|+.|++-.||. |..-...
T Consensus 163 ~gtASADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s~~----L~lTaSGD~taHIW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNSGL----LLLTASGDETAHIWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred eeecccccceeEEeeccc----cceeeecccccceeeEEeccccc----eEEEccCCcchHHHHHhhcCcCCCCCCCCCC
Confidence 445667788999999874 66778899999999998443333 788999999999975 3221110
Q ss_pred ---------CCCCCccc---c-C---CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc
Q 000450 549 ---------NSPGASLK---V-N---SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN 612 (1496)
Q Consensus 549 ---------d~~~~~~d---~-~---s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~ 612 (1496)
|.+....+ . + -..++..|.||.+.|.+..|-.. ++.++++|.|.+..+||+++|+
T Consensus 235 SsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g---------g~Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 235 SSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG---------GQQMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC---------cceeeeeeccccceeeeeccCc
Confidence 11111001 0 0 12356678999999999999764 8999999999999999999999
Q ss_pred eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCC
Q 000450 613 LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691 (1496)
Q Consensus 613 ~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~ 691 (1496)
.++.+.+|....+.+.-+|. .+++++.+.|.+.++||.+. -..+..|.||...|+++.|.-|++ +++|+.|
T Consensus 306 ~v~~LtGHd~ELtHcstHpt------QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD- 377 (481)
T KOG0300|consen 306 VVNILTGHDSELTHCSTHPT------QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD- 377 (481)
T ss_pred eeccccCcchhccccccCCc------ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCC-
Confidence 99999999999999988887 89999999999999999985 356788999999999999987764 6777777
Q ss_pred CCCCCCCCEEEEEECCCCe-EEEEEeCCC
Q 000450 692 SRTSDAVDVLFIWDVKTGA-RERVLRGTA 719 (1496)
Q Consensus 692 sg~~D~dg~V~VWDl~tg~-~~~~l~gh~ 719 (1496)
.+|+|||+++.+ .+.++.-..
T Consensus 378 -------rTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 378 -------RTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred -------ceEEEeeeccccCcceeeecCC
Confidence 999999998753 456665433
No 106
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.60 E-value=2.4e-11 Score=141.31 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=102.8
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEE
Q 000450 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1496)
Q Consensus 564 ~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~ 643 (1496)
....||....+.++.+|+ ...+++++.|+.|++|+ ..+++.+.. -..++.++.|+|. | .++
T Consensus 362 ~~v~gh~delwgla~hps---------~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhps------g-~va 422 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPS---------KNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPS------G-VVA 422 (626)
T ss_pred EEEEecccceeeEEcCCC---------hhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCc------c-eEE
Confidence 455789999999999997 78999999999999999 444443332 2468899999998 7 999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCC
Q 000450 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTA 719 (1496)
Q Consensus 644 Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~ 719 (1496)
.|...|...+.|.++...+..-.. ..++++|+|+|+|.+|++|+.| +.||||-+.. |.....+.-|.
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d--------~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHD--------NHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred EeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCC--------CeEEEEEECCCCcEEEEeeeec
Confidence 999999999999998555544333 7789999999999999999999 9999998854 55444443333
No 107
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.59 E-value=6.9e-14 Score=162.37 Aligned_cols=205 Identities=14% Similarity=0.076 Sum_probs=147.3
Q ss_pred eecccccCccccccccCCCCCCCccccc--ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDF--VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~--~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
+.+++.++++++||..+.+...+.+.+- .+....+++.++.++.. .++.|+.||+|.+|.... |
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~----~iAagc~DGSIQ~W~~~~----------~ 349 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK----LIAAGCLDGSIQIWDKGS----------R 349 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc----hhhhcccCCceeeeecCC----------c
Confidence 4455567788888887766543333222 23334566766444444 899999999999944321 1
Q ss_pred ccCCcceEEEEecCCc--cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEEccc--CCCEEEEEEC
Q 000450 556 KVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHH--VAPVRQIILS 630 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~--~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~H--~~~V~~l~~s 630 (1496)
-+ ......-..|.. .|+||.|++| +++|+|-|.|.++++||++.. +++.++.+- .-+-+.+.|+
T Consensus 350 ~v--~p~~~vk~AH~~g~~Itsi~FS~d---------g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 350 TV--RPVMKVKDAHLPGQDITSISFSYD---------GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred cc--ccceEeeeccCCCCceeEEEeccc---------cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 12 122344467887 8999999998 899999999999999999865 455555442 2244678899
Q ss_pred CCCCCCCCCCEEEEEeC------CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 631 PPQTEHPWSDCFLSVGE------DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 631 Pd~~~~~~g~~l~Sgs~------DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
|+ .+++++|.. -+++.+||-.+...++.+.-....|..+.|+|-=+.|++|+.| |+++||
T Consensus 419 Pd------~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd--------G~~~vy 484 (641)
T KOG0772|consen 419 PD------DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD--------GTAHVY 484 (641)
T ss_pred CC------ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC--------CceEEE
Confidence 99 788988753 5789999999999998887778889999999998899999988 999986
Q ss_pred ECC----CCeEEEEEeCCCCC
Q 000450 705 DVK----TGARERVLRGTASH 721 (1496)
Q Consensus 705 Dl~----tg~~~~~l~gh~a~ 721 (1496)
-=. .|..+.+...|...
T Consensus 485 Ydp~~S~RGak~cv~k~~rkk 505 (641)
T KOG0772|consen 485 YDPNESIRGAKLCVVKPPRKK 505 (641)
T ss_pred ECccccccchhheeecCcccc
Confidence 332 25556666665543
No 108
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.59 E-value=1.4e-14 Score=156.58 Aligned_cols=174 Identities=21% Similarity=0.238 Sum_probs=147.4
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
.+++|...|.++++..+.. ++++|+.|+++.||+.+.. ........+||++.|-.++|+|.+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~----~lasgs~dktv~v~n~e~~-------------r~~~~~~~~gh~~svdql~w~~~~- 76 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT----KLASGSFDKTVSVWNLERD-------------RFRKELVYRGHTDSVDQLCWDPKH- 76 (313)
T ss_pred HhhhhhhcceEEEEcccCc----eeeecccCCceEEEEecch-------------hhhhhhcccCCCcchhhheeCCCC-
Confidence 3577888999999888887 9999999999999665521 112223467999999999999873
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEE------------------------------------------------
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT------------------------------------------------ 615 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~------------------------------------------------ 615 (1496)
..++++++.|.+|++||++.+++.+
T Consensus 77 -------~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e 149 (313)
T KOG1407|consen 77 -------PDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE 149 (313)
T ss_pred -------CcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce
Confidence 7899999999999999998654332
Q ss_pred ----------------------------------EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE
Q 000450 616 ----------------------------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1496)
Q Consensus 616 ----------------------------------~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~ 661 (1496)
.++.|.....||.|+|+ |++|++|+.|..|-|||++..-|
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~------GryfA~GsADAlvSLWD~~ELiC 223 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD------GRYFATGSADALVSLWDVDELIC 223 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC------CceEeeccccceeeccChhHhhh
Confidence 34567777788888888 99999999999999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++.++.+.-+|..+.|+.||++|++++.| ..|-|=+++||..+..+.
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSED--------h~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASED--------HFIDIAEVETGDRVWEIP 270 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCcc--------ceEEeEecccCCeEEEee
Confidence 99999999999999999999999999999 889999999998877764
No 109
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.5e-11 Score=147.90 Aligned_cols=150 Identities=15% Similarity=0.017 Sum_probs=97.1
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccccc
Q 000450 98 SSLDNGALISACTDGVLCVWSRSSGHCRRR-RKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1496)
Q Consensus 98 ~s~d~~~LaSas~DG~l~VWdv~~G~ci~~-~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~ 176 (1496)
++.+...||-+=+||.|.+|++..+-+.+. ...| ......-..+.+.+||+.+|..
T Consensus 33 ~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~--~drsIE~L~W~e~~RLFS~g~s--------------------- 89 (691)
T KOG2048|consen 33 YSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP--EDRSIESLAWAEGGRLFSSGLS--------------------- 89 (691)
T ss_pred EeccCCceeeeccCCcEEEEccCCCceeeEEEecC--CCCceeeEEEccCCeEEeecCC---------------------
Confidence 466666799999999999999998755443 3332 1222333456688999998876
Q ss_pred ccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccc
Q 000450 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDRE 256 (1496)
Q Consensus 177 ~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~ 256 (1496)
+.|.-||+.+++.+...-. ..+.|..+++.|.. ..+.+++.||.+...++..+..
T Consensus 90 -------------g~i~EwDl~~lk~~~~~d~---~gg~IWsiai~p~~-----~~l~IgcddGvl~~~s~~p~~I---- 144 (691)
T KOG2048|consen 90 -------------GSITEWDLHTLKQKYNIDS---NGGAIWSIAINPEN-----TILAIGCDDGVLYDFSIGPDKI---- 144 (691)
T ss_pred -------------ceEEEEecccCceeEEecC---CCcceeEEEeCCcc-----ceEEeecCCceEEEEecCCceE----
Confidence 8999999999999888765 33558999987432 4477778999777776665420
Q ss_pred cCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCC
Q 000450 257 EGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGS 308 (1496)
Q Consensus 257 ~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~ 308 (1496)
+.++. +.-..+.+-.|++.+++..++.++.++. ++.||.
T Consensus 145 ------~~~r~------l~rq~sRvLslsw~~~~~~i~~Gs~Dg~-Iriwd~ 183 (691)
T KOG2048|consen 145 ------TYKRS------LMRQKSRVLSLSWNPTGTKIAGGSIDGV-IRIWDV 183 (691)
T ss_pred ------EEEee------cccccceEEEEEecCCccEEEecccCce-EEEEEc
Confidence 01000 1101133455666666777777766662 334443
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.59 E-value=1.9e-14 Score=164.42 Aligned_cols=201 Identities=18% Similarity=0.215 Sum_probs=168.2
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCc
Q 000450 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1496)
Q Consensus 510 ~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~ 589 (1496)
..++++..++.. +.+.+|+.|....+++ ..+++...+|.||+..|+.+.|+++
T Consensus 220 pgi~ald~~~s~----~~ilTGG~d~~av~~d---------------~~s~q~l~~~~Gh~kki~~v~~~~~-------- 272 (506)
T KOG0289|consen 220 PGITALDIIPSS----SKILTGGEDKTAVLFD---------------KPSNQILATLKGHTKKITSVKFHKD-------- 272 (506)
T ss_pred CCeeEEeecCCC----CcceecCCCCceEEEe---------------cchhhhhhhccCcceEEEEEEeccc--------
Confidence 456666655542 2789999998888833 3455778889999999999999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 590 FNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 590 ~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
...+++++.|..|++|.............|..+|+.+..+|. |.+|++++.|++..+.|+++++++.......
T Consensus 273 -~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t------geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 273 -LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT------GEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred -hhheeecCCcceEEeeccccccCccccccccccceeeeeccC------CcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 788999999999999999888888888999999999999998 9999999999999999999999987765322
Q ss_pred --CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccc
Q 000450 670 --NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSV 747 (1496)
Q Consensus 670 --~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~ 747 (1496)
-.+++.+|+|||..+.+|..| |.|+|||++++..+..+.||++.+..+.|.. + |-+
T Consensus 346 s~v~~ts~~fHpDgLifgtgt~d--------~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-------N-----GY~-- 403 (506)
T KOG0289|consen 346 SDVEYTSAAFHPDGLIFGTGTPD--------GVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-------N-----GYW-- 403 (506)
T ss_pred ccceeEEeeEcCCceEEeccCCC--------ceEEEEEcCCccccccCCCCCCceeEEEecc-------C-----ceE--
Confidence 357999999999999999998 9999999999999999999999999988872 2 322
Q ss_pred cccceeeccCCcEEeecccccc
Q 000450 748 SSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 748 s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
+...+.|+.++.|+|+..+
T Consensus 404 ---Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 404 ---LATAADDGSVKLWDLRKLK 422 (506)
T ss_pred ---EEEEecCCeEEEEEehhhc
Confidence 2244457779999996554
No 111
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=2e-14 Score=165.17 Aligned_cols=205 Identities=22% Similarity=0.248 Sum_probs=149.0
Q ss_pred CCEEEEEEcCCcEEEEEecccccCCCCCCcc------ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe
Q 000450 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASL------KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS 598 (1496)
Q Consensus 525 P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~------d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs 598 (1496)
++++|.|+.|-.|.||.++.....-....+- ....++.-..-.||+..|..|+|+.. ....|+|||
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~--------~~nVLaSgs 263 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN--------FRNVLASGS 263 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc--------cceeEEecC
Confidence 3589999999999997665322210000000 00011111223579999999999775 478999999
Q ss_pred CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000450 599 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 599 ~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~s 678 (1496)
.|.||++||+.+|++..++..|.+.|.++.|+|.. ..++++||.|++|++.|++...+....-.-.+.|..++|.
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-----p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-----PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD 338 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCC-----ceEEEeccccceEEeeeccCccccCceEEeccceEEEEec
Confidence 99999999999999999999999999999999986 7899999999999999998532221111234679999999
Q ss_pred CCCCEE-EEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeecc
Q 000450 679 CPRGYI-ACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHE 756 (1496)
Q Consensus 679 pdg~~L-~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~ 756 (1496)
|..... +++..| |+||-+|++. |+++.++..|.+.+-.+.+.. ...+.+.....
T Consensus 339 ~~se~~f~~~tdd--------G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~----------------~~p~~l~t~s~ 394 (463)
T KOG0270|consen 339 PHSENSFFVSTDD--------GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI----------------QTPGLLSTAST 394 (463)
T ss_pred CCCceeEEEecCC--------ceEEeeecCCCCCceeEEEeccCCcceEEecC----------------CCCcceeeccc
Confidence 976644 444444 9999999987 599999999998766653331 12233344556
Q ss_pred CCcEEeeccc
Q 000450 757 DGTFRQSQIQ 766 (1496)
Q Consensus 757 D~~ir~W~l~ 766 (1496)
|+.++.|++.
T Consensus 395 d~~Vklw~~~ 404 (463)
T KOG0270|consen 395 DKVVKLWKFD 404 (463)
T ss_pred cceEEEEeec
Confidence 9999999873
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.1e-14 Score=164.54 Aligned_cols=212 Identities=17% Similarity=0.152 Sum_probs=175.0
Q ss_pred cccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000450 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1496)
Q Consensus 480 ~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1496)
.+...+.+.+|.+.. |.+...+.+|...||++.+..+.. .+++|+.||.|.+|....+...+ +..+
T Consensus 98 ag~i~g~lYlWelss----G~LL~v~~aHYQ~ITcL~fs~dgs----~iiTgskDg~V~vW~l~~lv~a~------~~~~ 163 (476)
T KOG0646|consen 98 AGTISGNLYLWELSS----GILLNVLSAHYQSITCLKFSDDGS----HIITGSKDGAVLVWLLTDLVSAD------NDHS 163 (476)
T ss_pred eecccCcEEEEEecc----ccHHHHHHhhccceeEEEEeCCCc----EEEecCCCccEEEEEEEeecccc------cCCC
Confidence 334567788888776 577888899999999999888877 99999999999997765444431 1224
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.++...+.+|+-+|+.+...+. + -...|+|.|.|.++++||+..|.++.++. ...++.++++.|. .
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~G-----g--~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpa------e 229 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSG-----G--TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPA------E 229 (476)
T ss_pred ccceeeeccCcceeEEEEecCC-----C--ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccc------c
Confidence 5788999999999999988763 1 25689999999999999999999998875 3567999999998 7
Q ss_pred CEEEEEeCCCcEEEEECCCC----------------cEEEEecCCCC--CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEE
Q 000450 640 DCFLSVGEDFSVALASLETL----------------RVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVL 701 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~----------------~~l~~~~gH~~--~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V 701 (1496)
+.+..|+.||.|.+.++... ..+..+.||.+ .|+|++.+-||..|++|+.| |+|
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d--------g~V 301 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED--------GKV 301 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC--------CCE
Confidence 89999999999998887532 34566789998 99999999999999999998 999
Q ss_pred EEEECCCCeEEEEEeCCCCCceeeee
Q 000450 702 FIWDVKTGARERVLRGTASHSMFDHF 727 (1496)
Q Consensus 702 ~VWDl~tg~~~~~l~gh~a~vi~~~~ 727 (1496)
.|||+.+.+++|++.-..+.+...++
T Consensus 302 cvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 302 CVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEEecchHHHHHHHhhhccccceeEe
Confidence 99999999999998765666666654
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=7.2e-14 Score=154.63 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=149.1
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
++.++.+.+|+++|...+.. ...+..|.+.|+++.+..+.. -+.|++|++||.|.+|+ .
T Consensus 56 ~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S--~shLlS~sdDG~i~iw~---------------~ 114 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLS--KSHLLSGSDDGHIIIWR---------------V 114 (362)
T ss_pred EeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcc--hhheeeecCCCcEEEEE---------------c
Confidence 44556778999999887644 345677899999987433221 12699999999999943 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC--
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE-- 635 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~-- 635 (1496)
.+-....++++|.+.|+.|++||. +++-+|-+.|+.+++||+-.|+.-.....-. .-+.|.|+|.+..
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS---------~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPS---------GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFV 184 (362)
T ss_pred CCeEEeeeecccccccceeEecCC---------CceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEE
Confidence 334678899999999999999996 8999999999999999998886433332211 1122455554210
Q ss_pred -------------------------------CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE--cCCCC
Q 000450 636 -------------------------------HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW--DCPRG 682 (1496)
Q Consensus 636 -------------------------------~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~--spdg~ 682 (1496)
...+..+++|+.|+.|++||.++..++..|.+|.++|..+.+ .|++.
T Consensus 185 v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 185 VSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred EEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 124678999999999999999999999999999999999985 67888
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
||++++.| |.|+|||++..
T Consensus 265 ~lvTaSSD--------G~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSD--------GFIKVWDIDME 283 (362)
T ss_pred EEEEeccC--------ceEEEEEcccc
Confidence 99999999 99999999876
No 114
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=3.9e-14 Score=164.53 Aligned_cols=197 Identities=17% Similarity=0.170 Sum_probs=156.0
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
+....+|.++++| .++ ......+.+|..+|.... |+|. .+++|+.|+.+++ |+
T Consensus 84 aaGD~sG~V~vfD-~k~---r~iLR~~~ah~apv~~~~------f~~~d~t~l~s~sDd~v~k~--~d------------ 139 (487)
T KOG0310|consen 84 AAGDESGHVKVFD-MKS---RVILRQLYAHQAPVHVTK------FSPQDNTMLVSGSDDKVVKY--WD------------ 139 (487)
T ss_pred EccCCcCcEEEec-ccc---HHHHHHHhhccCceeEEE------ecccCCeEEEecCCCceEEE--EE------------
Confidence 3344567889999 443 234566788999998887 5554 7888888888888 33
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEEcccCCCEEEEEECCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
..+......+.||++.|.|.+++|.. +..++|||.||+|++||+++. ..+..+ .|..||..+.+-|.
T Consensus 140 -~s~a~v~~~l~~htDYVR~g~~~~~~--------~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lps-- 207 (487)
T KOG0310|consen 140 -LSTAYVQAELSGHTDYVRCGDISPAN--------DHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPS-- 207 (487)
T ss_pred -cCCcEEEEEecCCcceeEeeccccCC--------CeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCC--
Confidence 33334455789999999999999962 679999999999999999987 555565 68899999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
|..|++++. ..|++||+.+| +.+..+..|...|+|+++..++..|++++-| +.|+|||+.+.+.+.
T Consensus 208 ----gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD--------~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 208 ----GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD--------RHVKVFDTTNYKVVH 274 (487)
T ss_pred ----CCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc--------cceEEEEccceEEEE
Confidence 889999875 57999999855 5556666699999999999999999999999 999999988888887
Q ss_pred EEeCCCCCceee
Q 000450 714 VLRGTASHSMFD 725 (1496)
Q Consensus 714 ~l~gh~a~vi~~ 725 (1496)
.+.- .++++..
T Consensus 275 s~~~-~~pvLsi 285 (487)
T KOG0310|consen 275 SWKY-PGPVLSI 285 (487)
T ss_pred eeec-ccceeeE
Confidence 7654 3355554
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.1e-14 Score=161.58 Aligned_cols=225 Identities=15% Similarity=0.144 Sum_probs=174.3
Q ss_pred ccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000450 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1496)
Q Consensus 481 s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~ 560 (1496)
....-.+.+|.+...... .+.+ .-++.|.|+.-.++.. +++.|...|.|.+| ...+|
T Consensus 57 q~~rp~l~vw~i~k~~~~---~q~~-v~Pg~v~al~s~n~G~----~l~ag~i~g~lYlW---------------elssG 113 (476)
T KOG0646|consen 57 QLKRPLLHVWEILKKDQV---VQYI-VLPGPVHALASSNLGY----FLLAGTISGNLYLW---------------ELSSG 113 (476)
T ss_pred cccCccccccccCchhhh---hhhc-ccccceeeeecCCCce----EEEeecccCcEEEE---------------Eeccc
Confidence 334457888887654321 1222 2356788887555554 77777799999993 35577
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC---------CCceEEEEcccCCCEEEEEECC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~---------tg~~l~~~~~H~~~V~~l~~sP 631 (1496)
..+..+.+|-..|+||.|+-| +.+++|||.||.|.+|++. +-++++.|..|+-+|+.+...+
T Consensus 114 ~LL~v~~aHYQ~ITcL~fs~d---------gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~ 184 (476)
T KOG0646|consen 114 ILLNVLSAHYQSITCLKFSDD---------GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS 184 (476)
T ss_pred cHHHHHHhhccceeEEEEeCC---------CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecC
Confidence 888888999999999999987 8999999999999999985 3468899999999999999877
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC---
Q 000450 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT--- 708 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t--- 708 (1496)
.+ ....++|+|.|+++++||+..+..+.++. .+..+.+++.+|.+..+.+|..+ |.|.+-++..
T Consensus 185 Gg----~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~--------G~I~~~~~~~~~~ 251 (476)
T KOG0646|consen 185 GG----TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE--------GKIFQNLLFKLSG 251 (476)
T ss_pred CC----ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc--------ceEEeeehhcCCc
Confidence 52 14589999999999999999999888765 55679999999999999999998 9999988743
Q ss_pred -------------CeEEEEEeCCCC--CceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 709 -------------GARERVLRGTAS--HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 709 -------------g~~~~~l~gh~a--~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
+...+.+.||.. .+.+...| .+|+...++.- ||++.+|++..
T Consensus 252 ~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais------------~DgtlLlSGd~-----dg~VcvWdi~S 308 (476)
T KOG0646|consen 252 QSAGVNQKGRHEENTQINVLVGHENESAITCLAIS------------TDGTLLLSGDE-----DGKVCVWDIYS 308 (476)
T ss_pred ccccccccccccccceeeeeccccCCcceeEEEEe------------cCccEEEeeCC-----CCCEEEEecch
Confidence 234677889987 66666444 23444444443 99999999743
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=5.2e-13 Score=140.99 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=160.4
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
.+.-|.+.|..++|+.+.. +...+.....-|+.+|+.- +..+++..+.+.||++-|.+|- +=+
T Consensus 131 e~nmhdgtirdl~fld~~~-s~~~il~s~gagdc~iy~t-------------dc~~g~~~~a~sghtghilaly-swn-- 193 (350)
T KOG0641|consen 131 EFNMHDGTIRDLAFLDDPE-SGGAILASAGAGDCKIYIT-------------DCGRGQGFHALSGHTGHILALY-SWN-- 193 (350)
T ss_pred eeeecCCceeeeEEecCCC-cCceEEEecCCCcceEEEe-------------ecCCCCcceeecCCcccEEEEE-Eec--
Confidence 4567889999999877653 2223443334566666322 3456788899999999998874 222
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc--c-----CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--H-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~--H-----~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
+-.++||+.|.+|++||++-..++.++.. | ...|.++++.|. |+++++|-.|.+..+||+
T Consensus 194 -------~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps------grll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 194 -------GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS------GRLLASGHADSSCMLYDI 260 (350)
T ss_pred -------CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC------cceeeeccCCCceEEEEe
Confidence 78999999999999999998888876542 2 356999999998 999999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC----eEEEEEeCCCCCceeeeeecccc
Q 000450 657 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG----ARERVLRGTASHSMFDHFCKGIS 732 (1496)
Q Consensus 657 ~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg----~~~~~l~gh~a~vi~~~~~~~~~ 732 (1496)
+.++.++.|..|...|.+|.|+|...||++++.| ..|++=|+..- -.+.+...|...++...+.+.
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd--------~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~-- 330 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD--------MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ-- 330 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEeccc--------ceEEEeecccchhhcCceEEEEeccCceEEEEecCc--
Confidence 9999999999999999999999999999999998 89999998531 125667788888877766631
Q ss_pred cccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 733 MNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 733 ~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.-++++.+.|.+.-.|-+
T Consensus 331 ---------------d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 331 ---------------DFSFISSSADKTATLWAL 348 (350)
T ss_pred ---------------cceeeeccCcceEEEecc
Confidence 112344556888888864
No 117
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=9.6e-14 Score=170.85 Aligned_cols=209 Identities=13% Similarity=0.146 Sum_probs=161.2
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
.....+.||.+.|..+.+...+ +|++++.|.++++ |+ .....|+.+|. |.+.|||++|+
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-----fLLSSSMDKTVRL--Wh-------------~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-----FLLSSSMDKTVRL--WH-------------PGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cchhhhhccchhheecccccCC-----eeEeccccccEEe--ec-------------CCCcceeeEEe-cCCeeEEEEec
Confidence 4456789999999998855555 6999999999999 43 44557777765 99999999999
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~ 659 (1496)
|- +.++++||+-|+.||||++...+...=...+ .-|+++.|.|+ |+..+.|+-+|.+++|+.+..
T Consensus 419 Pv--------DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~Pd------Gk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 419 PV--------DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPD------GKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cc--------CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccC------CceEEEEEeccEEEEEEccCC
Confidence 96 5899999999999999999866654444444 78999999999 999999999999999999988
Q ss_pred cEEEEec--CC------CCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCc--eeeeee
Q 000450 660 RVERMFP--GH------PNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS--MFDHFC 728 (1496)
Q Consensus 660 ~~l~~~~--gH------~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~v--i~~~~~ 728 (1496)
+....+. .| ...|+.+.|.|... .|++.+.| ..|||+|.++-.++..+.|+.... +.+.|.
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD--------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs 555 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND--------SRIRIYDGRDKDLVHKFKGFRNTSSQISASFS 555 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC--------CceEEEeccchhhhhhhcccccCCcceeeeEc
Confidence 7765543 11 12799999987543 57777777 899999999999999999876422 122222
Q ss_pred cccccccccceEEcCCccccccceeeccCCcEEeecccccc
Q 000450 729 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 729 ~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
.+|. +++..++|..+.+|++..+.
T Consensus 556 ------------~Dgk-----~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 556 ------------SDGK-----HIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ------------cCCC-----EEEEeecCceEEEEeCCCCc
Confidence 1232 35555679999999975443
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.9e-13 Score=144.28 Aligned_cols=191 Identities=19% Similarity=0.151 Sum_probs=157.0
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
.+.|.+.|.|.++.++.. .+++|+.|..|++.+++.-.. ..++ ....+.-|.+.|..++|..+
T Consensus 85 ~khhkgsiyc~~ws~~ge----liatgsndk~ik~l~fn~dt~---------~~~g-~dle~nmhdgtirdl~fld~--- 147 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGE----LIATGSNDKTIKVLPFNADTC---------NATG-HDLEFNMHDGTIRDLAFLDD--- 147 (350)
T ss_pred ccccCccEEEEEecCccC----eEEecCCCceEEEEecccccc---------cccC-cceeeeecCCceeeeEEecC---
Confidence 467889999999666665 899999999999977752100 0112 22356779999999999765
Q ss_pred cccCcCCCEEEEEe-CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000450 585 AKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs-~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~ 663 (1496)
....+.+|+|++ .|+.|.+-|..+|+.++.+.+|++-|.++- +-+ +-.|++|+.|.+|++||++-..|+.
T Consensus 148 --~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn------~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 148 --PESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWN------GAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred --CCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Eec------CcEEEccCCCceEEEEeeeccceee
Confidence 223477888875 789999999999999999999999998874 333 6699999999999999999999988
Q ss_pred EecC--C-----CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeec
Q 000450 664 MFPG--H-----PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 664 ~~~g--H-----~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
++.. | .+.|.+|+..|.|++|++|-.| .+..+||++.|+.++.+..|++.+-++.|.+
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~d--------ssc~lydirg~r~iq~f~phsadir~vrfsp 283 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD--------SSCMLYDIRGGRMIQRFHPHSADIRCVRFSP 283 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCC--------CceEEEEeeCCceeeeeCCCccceeEEEeCC
Confidence 7641 2 2478999999999999999988 8999999999999999999999999998885
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.55 E-value=3.3e-14 Score=159.44 Aligned_cols=244 Identities=14% Similarity=0.135 Sum_probs=184.0
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----------c
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----------F 545 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~-----------l 545 (1496)
.+++.+.+|-+++||+.+. .+..++..|.+.|.-+.+.. ..+++++.|.+++.|..+. +
T Consensus 81 ~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~ 150 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVY 150 (433)
T ss_pred hhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc------cceEEecCCcceeeeeccCCcceeeeccccc
Confidence 3567788999999999875 56778999999999987444 3688899999999976321 0
Q ss_pred ccCC------------CCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce
Q 000450 546 ERHN------------SPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL 613 (1496)
Q Consensus 546 ~~~d------------~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~ 613 (1496)
.+.| .....||.....+++.+.--.+.|.++.|+|.. ..+|++|+.|++|.++|++.+.+
T Consensus 151 ~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE--------TsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE--------TSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred cccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc--------chheeeeccCCceEEEecccCCc
Confidence 0101 123478877777888887777889999999972 57899999999999999999998
Q ss_pred EEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCC
Q 000450 614 ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHS 692 (1496)
Q Consensus 614 l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~s 692 (1496)
++.... +-.-+.|+|+|+ ...|+++++|..+..+|++.. +++..+.+|.+.|.+|.|+|.|+-+++|+.|
T Consensus 223 l~KVi~-~mRTN~IswnPe------afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD-- 293 (433)
T KOG0268|consen 223 LKKVIL-TMRTNTICWNPE------AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD-- 293 (433)
T ss_pred cceeee-eccccceecCcc------ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc--
Confidence 866543 223467899997 889999999999999999875 4678889999999999999999999999998
Q ss_pred CCCCCCCEEEEEECCCCeEEEEEeCCC-CCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccc
Q 000450 693 RTSDAVDVLFIWDVKTGARERVLRGTA-SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1496)
Q Consensus 693 g~~D~dg~V~VWDl~tg~~~~~l~gh~-a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~ 770 (1496)
.+|+||.+..++.--++..-. .+++++.+. ..+-.++.|+ .|+.+|.|..+..|+
T Consensus 294 ------ksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S------~Dskyi~SGS-----------dd~nvRlWka~Asek 349 (433)
T KOG0268|consen 294 ------KSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS------MDSKYIISGS-----------DDGNVRLWKAKASEK 349 (433)
T ss_pred ------ceEEEeecCCCcchhhhhHhhhheeeEEEEe------ccccEEEecC-----------CCcceeeeecchhhh
Confidence 999999998876543332111 234444333 2233344443 389999998654443
No 120
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.55 E-value=1.5e-13 Score=155.03 Aligned_cols=201 Identities=17% Similarity=0.222 Sum_probs=156.1
Q ss_pred EEEEEEcCCcEEEEEecccccC-CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERH-NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~-d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
..++-++.|.+.||........ +.++..-.....+++.++.+|.+.=..|.|+|-. ...|+||..-+.|++
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~--------~g~LlsGDc~~~I~l 238 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK--------TGRLLSGDCVKGIHL 238 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc--------ccccccCccccceEe
Confidence 5677788999999654321111 1111111123346788999999999999999951 456889988889999
Q ss_pred EECCCCceE---EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEecCCCCCcEEEEEcC
Q 000450 606 WDLGSGNLI---TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 606 WDl~tg~~l---~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~---~~l~~~~gH~~~V~~V~~sp 679 (1496)
|...+|.-. ..|.+|+..|-.+.|+|.+ ...|+|||.|++|+|||++.+ .++.+ ..|.+.|+.|.|+.
T Consensus 239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE-----~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE-----DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR 312 (440)
T ss_pred eeeccCceeecCccccccccchhhhccCCcc-----CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC
Confidence 999987643 4577899999999999986 779999999999999999987 34444 88999999999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCC---CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeecc
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHE 756 (1496)
Q Consensus 680 dg~~L~tgs~D~sg~~D~dg~V~VWDl~t---g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~ 756 (1496)
...+|++|+.| |+++|||++. ++.+..+.-|.++++++.+.+. . .+. +.....
T Consensus 313 ~~~lLasG~Dd--------Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~----e-~s~-----------iaasg~ 368 (440)
T KOG0302|consen 313 REPLLASGGDD--------GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH----E-DSV-----------IAASGE 368 (440)
T ss_pred CcceeeecCCC--------ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc----c-Cce-----------EEeccC
Confidence 98899998888 9999999976 6788999999999999887741 1 111 223345
Q ss_pred CCcEEeecc
Q 000450 757 DGTFRQSQI 765 (1496)
Q Consensus 757 D~~ir~W~l 765 (1496)
|.++-+|+|
T Consensus 369 D~QitiWDl 377 (440)
T KOG0302|consen 369 DNQITIWDL 377 (440)
T ss_pred CCcEEEEEe
Confidence 899999997
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.54 E-value=1.1e-13 Score=160.66 Aligned_cols=214 Identities=18% Similarity=0.197 Sum_probs=153.7
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
.+.+|...|+++++-+... ++++|+-|-+|+.|.++-+.. .. ...+.+.-.. ...|+++.|++.
T Consensus 162 ~l~hgtk~Vsal~~Dp~Ga----R~~sGs~Dy~v~~wDf~gMda---s~-----~~fr~l~P~E--~h~i~sl~ys~T-- 225 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGA----RFVSGSLDYTVKFWDFQGMDA---SM-----RSFRQLQPCE--THQINSLQYSVT-- 225 (641)
T ss_pred eccCCceEEEEeeecCCCc----eeeeccccceEEEEecccccc---cc-----hhhhccCccc--ccccceeeecCC--
Confidence 3678899999999666665 999999999999966652221 11 1112222223 347899999997
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEE-------------EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT-------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~-------------~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dgs 650 (1496)
+..++..+.....+|+|-. |..+. .-++|...+++..|+|+. ...|++++.|++
T Consensus 226 -------g~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-----k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 226 -------GDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-----KEEFLTCSYDGT 292 (641)
T ss_pred -------CCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCc-----ccceEEecCCCc
Confidence 5555555556788999954 43332 235799999999999985 679999999999
Q ss_pred EEEEECCCCcE-EEEec-----CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE---EEEEeCCCC-
Q 000450 651 VALASLETLRV-ERMFP-----GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR---ERVLRGTAS- 720 (1496)
Q Consensus 651 V~lWdl~~~~~-l~~~~-----gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~---~~~l~gh~a- 720 (1496)
+|+||+.+.+. +..|. +..-+++.++|+||++++++||.| |+|.+||...... ..+-..|..
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D--------GSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD--------GSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC--------CceeeeecCCcccccceEeeeccCCC
Confidence 99999976442 23332 333478999999999999999999 9999999754321 334456665
Q ss_pred -CceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccccc
Q 000450 721 -HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771 (1496)
Q Consensus 721 -~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~ 771 (1496)
.+.++.|. .+|+.+.+-.. |+++|.|+|+++.+.
T Consensus 365 ~~Itsi~FS------------~dg~~LlSRg~-----D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 365 QDITSISFS------------YDGNYLLSRGF-----DDTLKVWDLRQFKKP 399 (641)
T ss_pred CceeEEEec------------cccchhhhccC-----CCceeeeeccccccc
Confidence 56666665 23677666666 999999999887764
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=1.6e-13 Score=158.41 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=143.7
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+|...+.++++.+++. ++++|..|..|.| |+.++.++++.+.+|.+.|.+++|-..
T Consensus 199 ~~h~keil~~avS~Dgk----ylatgg~d~~v~I---------------w~~~t~ehv~~~~ghr~~V~~L~fr~g---- 255 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGK----YLATGGRDRHVQI---------------WDCDTLEHVKVFKGHRGAVSSLAFRKG---- 255 (479)
T ss_pred ccccceeEEEEEcCCCc----EEEecCCCceEEE---------------ecCcccchhhcccccccceeeeeeecC----
Confidence 37889999999888888 9999999999988 335567788889999999999999764
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~ 665 (1496)
...|.+++.|++|++|++.....+.++.+|.+.|..|..... .+++..|+.|+++++|.+.. +....|
T Consensus 256 -----t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r------eR~vtVGgrDrT~rlwKi~e-esqlif 323 (479)
T KOG0299|consen 256 -----TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR------ERCVTVGGRDRTVRLWKIPE-ESQLIF 323 (479)
T ss_pred -----ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc------cceEEeccccceeEEEeccc-cceeee
Confidence 568999999999999999999899999999999999987766 67888888999999999943 444677
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 666 ~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
.+|.+.+-|++|-.+. .+++|+.| |.|.+|++-+.+.+.+..
T Consensus 324 rg~~~sidcv~~In~~-HfvsGSdn--------G~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 324 RGGEGSIDCVAFINDE-HFVSGSDN--------GSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eCCCCCeeeEEEeccc-ceeeccCC--------ceEEEeeecccCceeEee
Confidence 8899999999998654 56788888 999999999888876654
No 123
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.7e-13 Score=165.18 Aligned_cols=197 Identities=20% Similarity=0.202 Sum_probs=158.4
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEE
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~ 564 (1496)
..+.+|+.....- ..-..-+...|+++.+..+.. .|++|..+|.+.| || ..+.+...
T Consensus 197 ~~vylW~~~s~~v----~~l~~~~~~~vtSv~ws~~G~----~LavG~~~g~v~i--wD-------------~~~~k~~~ 253 (484)
T KOG0305|consen 197 QSVYLWSASSGSV----TELCSFGEELVTSVKWSPDGS----HLAVGTSDGTVQI--WD-------------VKEQKKTR 253 (484)
T ss_pred ceEEEEecCCCce----EEeEecCCCceEEEEECCCCC----EEEEeecCCeEEE--Ee-------------hhhccccc
Confidence 4567777665431 111222267899999777666 9999999999999 43 44456677
Q ss_pred EEec-CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEE-EcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 565 YFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 565 ~l~g-H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~-~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
.+.+ |.+.|-|++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++| +.++
T Consensus 254 ~~~~~h~~rvg~laW~-----------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d------~~~l 316 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN-----------SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD------GNQL 316 (484)
T ss_pred cccCCcCceeEEEecc-----------CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC------CCee
Confidence 7778 99999999997 47899999999999999998876655 8899999999999999 9999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC-CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCC
Q 000450 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd-g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~ 721 (1496)
+||+.|+.+.|||....+++..+..|.+.|.+++|+|- ...||+|+. +. |++|++||..+|++++.+.... +
T Consensus 317 ASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG----s~--D~~i~fwn~~~g~~i~~vdtgs-Q 389 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG----SA--DRCIKFWNTNTGARIDSVDTGS-Q 389 (484)
T ss_pred ccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC----Cc--ccEEEEEEcCCCcEecccccCC-c
Confidence 99999999999999888999999999999999999994 457777653 23 4999999999999988765433 4
Q ss_pred ceeeeee
Q 000450 722 SMFDHFC 728 (1496)
Q Consensus 722 vi~~~~~ 728 (1496)
+-.+.+.
T Consensus 390 VcsL~Ws 396 (484)
T KOG0305|consen 390 VCSLIWS 396 (484)
T ss_pred eeeEEEc
Confidence 4444444
No 124
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.51 E-value=1e-13 Score=156.89 Aligned_cols=136 Identities=19% Similarity=0.292 Sum_probs=124.0
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-------ceEEEEcccCCCEEEEEECCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-------~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
...+.||+++|..++|.|.+ .+.++|||.|.+|.||++-.+ +++..+.+|...|--|+|+|..
T Consensus 74 ~P~v~GHt~~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-- 143 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-- 143 (472)
T ss_pred CCCccCccccccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc--
Confidence 34567999999999999973 789999999999999999754 3567889999999999999985
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+.|+|++.|.+|.+||+.+|+.+.++. |..-|+++.|+.||.+|++.|.| ..|+|||.++|+.+.+-
T Consensus 144 ---~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD--------KkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 144 ---PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD--------KKVRVIDPRRGTVVSEG 211 (472)
T ss_pred ---hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc--------ceeEEEcCCCCcEeeec
Confidence 6799999999999999999999988877 99999999999999999999999 99999999999999988
Q ss_pred eCCCC
Q 000450 716 RGTAS 720 (1496)
Q Consensus 716 ~gh~a 720 (1496)
.+|.+
T Consensus 212 ~~heG 216 (472)
T KOG0303|consen 212 VAHEG 216 (472)
T ss_pred ccccC
Confidence 88875
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.51 E-value=5.8e-13 Score=145.75 Aligned_cols=231 Identities=17% Similarity=0.193 Sum_probs=157.8
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce---EEEEecCCccEEEEEEecCC
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS---RQYFLGHTGAVLCLAAHRMV 582 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~---~~~l~gH~~~V~~La~spd~ 582 (1496)
..|.+.|+++.+-.... .++++|+.||.|.||+.+....-.... -+...++ .+.-.+|+-.|..+.|.|-
T Consensus 40 r~HgGsvNsL~id~teg---rymlSGgadgsi~v~Dl~n~t~~e~s~---li~k~~c~v~~~h~~~Hky~iss~~WyP~- 112 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEG---RYMLSGGADGSIAVFDLQNATDYEASG---LIAKHKCIVAKQHENGHKYAISSAIWYPI- 112 (397)
T ss_pred ccCCCccceeeeccccc---eEEeecCCCccEEEEEeccccchhhcc---ceeheeeeccccCCccceeeeeeeEEeee-
Confidence 56888999876433221 279999999999996654221100000 0111111 1223578889999999886
Q ss_pred CCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC-EEEEEeCCCcEEEEECCCCcE
Q 000450 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLETLRV 661 (1496)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~-~l~Sgs~DgsV~lWdl~~~~~ 661 (1496)
+...+.|+|.|.++++||..+-+....|+- .+.|.+-+++|-.. .+ ++++|-.|-.|++-|+..|.+
T Consensus 113 -------DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~----sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 113 -------DTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAM----SHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred -------cCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhh----cceEEEEecCCCcEEEEeccCCcc
Confidence 377999999999999999999887777753 56788888888631 24 556677788999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEE-EEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCce-eeeeecccccccccc
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYI-ACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSM-FDHFCKGISMNSISG 738 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L-~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi-~~~~~~~~~~~~~sg 738 (1496)
-+++.||.+.|.+|.|+|...++ ++|+.| |.|++||++.. -+.+++..|...-. .+.... .......|
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD--------g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~-ah~gkvng 251 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSAD--------GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT-AHYGKVNG 251 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCC--------ceEEEEEeecccceeEEeecccCccCccccccc-cccceeee
Confidence 99999999999999999988865 667777 99999999875 67888888873111 111000 00001222
Q ss_pred eEEcCCccccccceeeccCCcEEeecccc
Q 000450 739 SVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 739 ~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
.. +.. ..-.+.....|.++|.|+..+
T Consensus 252 la--~tS-d~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 252 LA--WTS-DARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred ee--ecc-cchhhhhccCccceEEeeccc
Confidence 11 222 222344556699999998643
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1e-12 Score=155.15 Aligned_cols=143 Identities=15% Similarity=0.222 Sum_probs=111.2
Q ss_pred ccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC
Q 000450 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1496)
Q Consensus 523 f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D 600 (1496)
|+|. ++++++ -..|+| +++.. ...++.+......|..+++||. |..|+.|+.|
T Consensus 574 FHPs~p~lfVaT-q~~vRi--YdL~k-------------qelvKkL~tg~kwiS~msihp~---------GDnli~gs~d 628 (733)
T KOG0650|consen 574 FHPSKPYLFVAT-QRSVRI--YDLSK-------------QELVKKLLTGSKWISSMSIHPN---------GDNLILGSYD 628 (733)
T ss_pred ecCCCceEEEEe-ccceEE--EehhH-------------HHHHHHHhcCCeeeeeeeecCC---------CCeEEEecCC
Confidence 6665 555554 457888 44221 1223333334456889999996 8889999999
Q ss_pred CcEEEEECCCC-ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC------CC---cEEEEecCCCC
Q 000450 601 CSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE------TL---RVERMFPGHPN 670 (1496)
Q Consensus 601 gtV~lWDl~tg-~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~------~~---~~l~~~~gH~~ 670 (1496)
+.++.+|+.-. ++.+++..|...|++|+|++. -.+||||+.|+++.|+.-. .. -++..++||..
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r------yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR------YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccc------cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 99999999754 577889999999999999998 7899999999999988532 11 24577889976
Q ss_pred C----cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 671 Y----PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 671 ~----V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
. |..+.|+|...+|++++.| |+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd--------~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGAD--------GTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCC--------ceEEee
Confidence 5 8999999999999999998 999998
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.9e-12 Score=159.81 Aligned_cols=186 Identities=18% Similarity=0.225 Sum_probs=151.4
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.+.+++.+.++.++........+ .+.+-+-.++.+++..+.. .++.|++|-.|++.+.+
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~----iL~Rftlp~r~~~v~g~g~----~iaagsdD~~vK~~~~~------------- 126 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT----ILARFTLPIRDLAVSGSGK----MIAAGSDDTAVKLLNLD------------- 126 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc----eeeeeeccceEEEEecCCc----EEEeecCceeEEEEecc-------------
Confidence 46777888888888877654422 2233345667777666665 89999999999995443
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc--------cCCCEEEEE
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--------HVAPVRQII 628 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~--------H~~~V~~l~ 628 (1496)
+......+.||.++|.+|.|+|. +.+||+.+.||+|++||+.++.+.+++.+ -...+..++
T Consensus 127 --D~s~~~~lrgh~apVl~l~~~p~---------~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 127 --DSSQEKVLRGHDAPVLQLSYDPK---------GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred --ccchheeecccCCceeeeeEcCC---------CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeee
Confidence 23456789999999999999997 89999999999999999999987776654 145678999
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC--CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g--H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
|+|+ +..++..+.|++|++|+..++.....+.. |...+..+.|+|.|.||+++..| |.|-|||.
T Consensus 196 W~Pk------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~--------g~I~vWnv 261 (933)
T KOG1274|consen 196 WHPK------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD--------GQILVWNV 261 (933)
T ss_pred ecCC------CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccC--------CcEEEEec
Confidence 9999 78899999999999999999888776653 44458999999999999999999 99999999
Q ss_pred CC
Q 000450 707 KT 708 (1496)
Q Consensus 707 ~t 708 (1496)
++
T Consensus 262 ~t 263 (933)
T KOG1274|consen 262 DT 263 (933)
T ss_pred cc
Confidence 97
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.2e-11 Score=137.18 Aligned_cols=95 Identities=19% Similarity=0.266 Sum_probs=73.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCC---------ccEEEEEEecCCCCcccCcCCCEEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT---------GAVLCLAAHRMVGTAKGWSFNEVLVSG 597 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~---------~~V~~La~spd~~~~~~~~~~~~L~SG 597 (1496)
..++++-||.+.+-.++.-. +.......|+.|. -+|++++|||- .+.|+||
T Consensus 191 Gy~~sSieGRVavE~~d~s~-----------~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~---------~~tfaTg 250 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSE-----------EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI---------HGTFATG 250 (323)
T ss_pred ceEEEeecceEEEEccCCch-----------HHhhhceeEEeeecccCCceEEEEeceeEeccc---------cceEEec
Confidence 57788888888885554210 0011223344443 27999999997 5889999
Q ss_pred eCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000450 598 SMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1496)
Q Consensus 598 s~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~ 647 (1496)
+.||.|.+||+.+.+.+..|......|.+++|+.+ |.+||.++.
T Consensus 251 GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~d------G~~LAia~s 294 (323)
T KOG1036|consen 251 GSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMD------GSLLAIASS 294 (323)
T ss_pred CCCceEEEccCcchhhhhhccCCCCceEEEEeccC------CCeEEEEec
Confidence 99999999999999999999888888999999999 889988864
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.49 E-value=1.1e-13 Score=155.37 Aligned_cols=200 Identities=17% Similarity=0.249 Sum_probs=155.6
Q ss_pred ccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 504 DFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
.+.+|.+.|.+++ =+|. .+++|+.||.|+|| + ..+..+..++..|.|.|..|.+..
T Consensus 61 ~L~gHrdGV~~la------khp~~ls~~aSGs~DG~VkiW--n-------------lsqR~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLA------KHPNKLSTVASGSCDGEVKIW--N-------------LSQRECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred hccccccccchhh------cCcchhhhhhccccCceEEEE--e-------------hhhhhhhheeecccCceeeEEecc
Confidence 3578999999987 4444 68999999999993 3 334577889999999999999863
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECC--------------------------------------CCceEEEEcccCC
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLG--------------------------------------SGNLITVMHHHVA 622 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~--------------------------------------tg~~l~~~~~H~~ 622 (1496)
..++++|.|.+|+.|-+. ...++..|..-..
T Consensus 120 -----------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 -----------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred -----------cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC
Confidence 557888888888888743 1123444555566
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEE
Q 000450 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1496)
Q Consensus 623 ~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~ 702 (1496)
.|.++.|+|.+ ..+|++++.|++|.|||++++.+++... -.-.-+.|+|+|..--++++..| ..+|
T Consensus 189 ti~svkfNpvE-----TsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED--------~nlY 254 (433)
T KOG0268|consen 189 SISSVKFNPVE-----TSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANED--------HNLY 254 (433)
T ss_pred ceeEEecCCCc-----chheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecccc--------ccce
Confidence 78889999985 5689999999999999999998887654 22345789999977677777777 8999
Q ss_pred EEECCC-CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 703 IWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 703 VWDl~t-g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
.+|++. .+.+.+..+|.+.++.+.|.+ +|..-+++++ |.+||++...
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsp------------tG~Efvsgsy-----DksIRIf~~~ 302 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDVDFSP------------TGQEFVSGSY-----DKSIRIFPVN 302 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEeccCC------------Ccchhccccc-----cceEEEeecC
Confidence 999987 456889999999999988873 2666666666 9999997753
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=6.1e-13 Score=142.80 Aligned_cols=200 Identities=17% Similarity=0.213 Sum_probs=155.2
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++++.+.++++++++..++.+ -++..++.+|.++|+.+++..... ...|++++.||.+.||+.. .+ .|.
T Consensus 25 rlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~--G~iLAScsYDgkVIiWke~-------~g-~w~ 93 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKF--GTILASCSYDGKVIIWKEE-------NG-RWT 93 (299)
T ss_pred eeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeeccccc--CcEeeEeecCceEEEEecC-------CC-chh
Confidence 478888999999999988755 367788999999999988543110 1289999999999996543 11 232
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQ 633 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~ 633 (1496)
.......|...|++++|.|.. .+-.|++++.||+|.+.+.+.. ..-.....|.-.|+++.|.|..
T Consensus 94 -----k~~e~~~h~~SVNsV~waphe-------ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 94 -----KAYEHAAHSASVNSVAWAPHE-------YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred -----hhhhhhhhcccceeecccccc-------cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 223456799999999998862 3779999999999999998754 2335667899999999999963
Q ss_pred CCC------C--CCCEEEEEeCCCcEEEEECCCCc--EEEEecCCCCCcEEEEEcCCC----CEEEEEEcCCCCCCCCCC
Q 000450 634 TEH------P--WSDCFLSVGEDFSVALASLETLR--VERMFPGHPNYPAKVVWDCPR----GYIACLCRDHSRTSDAVD 699 (1496)
Q Consensus 634 ~~~------~--~g~~l~Sgs~DgsV~lWdl~~~~--~l~~~~gH~~~V~~V~~spdg----~~L~tgs~D~sg~~D~dg 699 (1496)
... + .-+.|+||+.|..|+||+..+++ ..+.+.+|.+.|..|+|.|.- .+|++++.| |
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD--------g 233 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD--------G 233 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC--------C
Confidence 210 1 11469999999999999998753 446689999999999999964 589999999 9
Q ss_pred EEEEEECC
Q 000450 700 VLFIWDVK 707 (1496)
Q Consensus 700 ~V~VWDl~ 707 (1496)
+|.||-.+
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999764
No 131
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6e-12 Score=140.41 Aligned_cols=199 Identities=17% Similarity=0.168 Sum_probs=158.0
Q ss_pred ccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
.+.+++..++.++ +.++.|.||...|+++.+.+... .+++++.|++|++ || ....++
T Consensus 78 ~d~tIryLsl~dN----kylRYF~GH~~~V~sL~~sP~~d----~FlS~S~D~tvrL--WD-------------lR~~~c 134 (311)
T KOG1446|consen 78 EDDTIRYLSLHDN----KYLRYFPGHKKRVNSLSVSPKDD----TFLSSSLDKTVRL--WD-------------LRVKKC 134 (311)
T ss_pred CCCceEEEEeecC----ceEEEcCCCCceEEEEEecCCCC----eEEecccCCeEEe--eE-------------ecCCCC
Confidence 3457777777765 55788999999999998666554 8999999999999 44 223344
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC--ceEEEEccc---CCCEEEEEECCCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVMHHH---VAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg--~~l~~~~~H---~~~V~~l~~sPd~~~~~ 637 (1496)
...+.-- .-...+|.|. |-++|.|.....|+++|++.. .+..+|... ....+.+.|+|+
T Consensus 135 qg~l~~~--~~pi~AfDp~---------GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d----- 198 (311)
T KOG1446|consen 135 QGLLNLS--GRPIAAFDPE---------GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD----- 198 (311)
T ss_pred ceEEecC--CCcceeECCC---------CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC-----
Confidence 4433322 2235688997 788888887779999999864 344555443 567899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCc---EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V---~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|++++-....+.+.+.|--+|..+.++.++...- ....|+||++++++|+.| |+|++|++++|+.+..
T Consensus 199 -GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d--------g~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 199 -GKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD--------GTIHVWNLETGKKVAV 269 (311)
T ss_pred -CCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC--------CcEEEEEcCCCcEeeE
Confidence 9999999999999999999999999998886632 678999999999999988 9999999999999999
Q ss_pred EeC-CCCCceeeeeec
Q 000450 715 LRG-TASHSMFDHFCK 729 (1496)
Q Consensus 715 l~g-h~a~vi~~~~~~ 729 (1496)
+.| +...+.+.+|.|
T Consensus 270 ~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 270 LRGPNGGPVSCVRFNP 285 (311)
T ss_pred ecCCCCCCccccccCC
Confidence 999 577777776664
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3e-12 Score=141.49 Aligned_cols=245 Identities=12% Similarity=0.123 Sum_probs=172.8
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++++.+.+.++++||.....-.=.+....+.|.+.|..+.+.+..+ ...+++++.|+++.||.=+.. ..+.+++.|.
T Consensus 27 RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf--GqvvA~cS~Drtv~iWEE~~~-~~~~~~~~Wv 103 (361)
T KOG2445|consen 27 RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF--GQVVATCSYDRTVSIWEEQEK-SEEAHGRRWV 103 (361)
T ss_pred eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc--cceEEEEecCCceeeeeeccc-ccccccceeE
Confidence 5888889999999997443332245556788999999987443221 127899999999999432211 0122333443
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC------ceEEEEc-------ccCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG------NLITVMH-------HHVAP 623 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg------~~l~~~~-------~H~~~ 623 (1496)
...++...+..|+.+.|.|.+ .|-.|++++.||++|||+.-.. .+.+.+. .+..+
T Consensus 104 -----~~ttl~DsrssV~DV~FaP~h-------lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 104 -----RRTTLVDSRSSVTDVKFAPKH-------LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred -----EEEEeecCCcceeEEEecchh-------cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 356777888999999999963 4779999999999999987543 3334444 46678
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCC-----CcEEEEECCCC----cEEEEecCCCCCcEEEEEcCCC----CEEEEEEcC
Q 000450 624 VRQIILSPPQTEHPWSDCFLSVGED-----FSVALASLETL----RVERMFPGHPNYPAKVVWDCPR----GYIACLCRD 690 (1496)
Q Consensus 624 V~~l~~sPd~~~~~~g~~l~Sgs~D-----gsV~lWdl~~~----~~l~~~~gH~~~V~~V~~spdg----~~L~tgs~D 690 (1496)
..||.|+|... ....|+.|+.+ +.+.||....+ ..+..+.+|..+|++++|.|.- ..|+++|.|
T Consensus 172 ~~CvsWn~sr~---~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 172 CFCVSWNPSRM---HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred ceEEeeccccc---cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 89999998632 23467777655 48889976432 3456778999999999999953 478999998
Q ss_pred CCCCCCCCCEEEEEECCCC--------------------eEEEEEeCCCCCceeeeeecccccccccceEEcCCcccccc
Q 000450 691 HSRTSDAVDVLFIWDVKTG--------------------ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL 750 (1496)
Q Consensus 691 ~sg~~D~dg~V~VWDl~tg--------------------~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~ 750 (1496)
| |+||.++.. +.+..+.+|..++..+.+. .+ |....+..
T Consensus 249 --------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN-------mt-----GtiLsStG 307 (361)
T KOG2445|consen 249 --------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN-------MT-----GTILSSTG 307 (361)
T ss_pred --------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe-------ee-----eeEEeecC
Confidence 8 999999731 2456678888888887555 23 33333333
Q ss_pred ceeeccCCcEEeecc
Q 000450 751 LLPIHEDGTFRQSQI 765 (1496)
Q Consensus 751 l~~~~~D~~ir~W~l 765 (1496)
.||++|.|..
T Consensus 308 -----dDG~VRLWka 317 (361)
T KOG2445|consen 308 -----DDGCVRLWKA 317 (361)
T ss_pred -----CCceeeehhh
Confidence 4999999985
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.46 E-value=1.9e-10 Score=133.51 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=70.4
Q ss_pred EEEEEecCCCCcccCcCCCE-EEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE-eCCCcE
Q 000450 574 LCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSV 651 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~-L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg-s~DgsV 651 (1496)
..++|+|+ ++. +++.+.++.|.+||+.+++.+..+. +...+.++.|+|+ ++.++++ +.++.|
T Consensus 210 ~~i~~s~d---------g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~------g~~l~~~~~~~~~i 273 (300)
T TIGR03866 210 VGIKLTKD---------GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD------EKYLLTTNGVSNDV 273 (300)
T ss_pred cceEECCC---------CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC------CCEEEEEcCCCCeE
Confidence 45788887 565 4555567789999999988776653 4457999999999 7887776 569999
Q ss_pred EEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000450 652 ALASLETLRVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 652 ~lWdl~~~~~l~~~~gH~~~V~~V~~sp 679 (1496)
++||+++++++..+... ..++.++++|
T Consensus 274 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 274 SVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999999999988754 5568888876
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=4.2e-12 Score=140.43 Aligned_cols=238 Identities=17% Similarity=0.186 Sum_probs=152.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccc
Q 000450 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS 98 (1496)
Q Consensus 19 Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~ 98 (1496)
-+|+.|++-|.+||.|+.||.|.+||+.+ ..+..+|.+|..||++|+ +
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-----~~iar~lsaH~~pi~sl~---------------------------W 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-----FRIARMLSAHVRPITSLC---------------------------W 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-----cchhhhhhccccceeEEE---------------------------e
Confidence 68999999999999999999999999986 456678999999999999 5
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcc------cccccCCccccccc----
Q 000450 99 SLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGC------CFIDTNQLSDHHSF---- 168 (1496)
Q Consensus 99 s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~------~~id~~~l~~~~~~---- 168 (1496)
|+|+..|+|+|.|..+.+||+.+|.|+.+..++ +|.--+.+.|..+-.|+.+ ..++... ..|++
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~----spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d 147 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD----SPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKD 147 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEEcc----CccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCC
Confidence 777778999999999999999999999887664 3333233332222112111 1111110 11222
Q ss_pred -----ccccccccccccC--CCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCc
Q 000450 169 -----ESVEGDLVSEDKE--VPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGR 241 (1496)
Q Consensus 169 -----~~v~~~~~~~d~~--~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~ 241 (1496)
+..-.+ .++|+. .......++.+.++|..|++++..+.-.. +..|..+-|+- .+ ..+++-++|..
T Consensus 148 ~d~dln~sas~-~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~---~g--~~liiNtsDRv 219 (405)
T KOG1273|consen 148 DDGDLNSSASH-GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS--VQAIKQIIVSR---KG--RFLIINTSDRV 219 (405)
T ss_pred Ccccccccccc-ccccCCCCEEEEecCcceEEEEecchheeeeeeeech--heeeeEEEEec---cC--cEEEEecCCce
Confidence 111111 133333 34466778999999999999887665322 23377777662 22 22444499999
Q ss_pred EEEEECCCCCccccccCCCcccCC-CccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc
Q 000450 242 LQLVPISKESHLDREEGNGLCKSS-SQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS 310 (1496)
Q Consensus 242 V~lWdl~~~~~~~~~~~~~l~~~e-k~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~ 310 (1496)
||++++..-... +..++. +.+ |-.++++..+. ..+.|+.+|.++..++...-.+-+|+...
T Consensus 220 IR~ye~~di~~~-~r~~e~--e~~~K~qDvVNk~~W-----k~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 220 IRTYEISDIDDE-GRDGEV--EPEHKLQDVVNKLQW-----KKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEEehhhhccc-CccCCc--ChhHHHHHHHhhhhh-----hheeecCCccEEEeccccceeEEEEecCC
Confidence 999998743100 111111 111 23345555554 67888999999887765544444565543
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=4.2e-12 Score=140.38 Aligned_cols=166 Identities=19% Similarity=0.314 Sum_probs=129.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++.|+.||.+.||.++ +...-+.+.+|..+|+|++|++| |+.|+|+|.|..|++|
T Consensus 37 ~lAvGc~nG~vvI~D~~---------------T~~iar~lsaH~~pi~sl~WS~d---------gr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFD---------------TFRIARMLSAHVRPITSLCWSRD---------GRKLLTSSRDWSIKLW 92 (405)
T ss_pred eeeeeccCCcEEEEEcc---------------ccchhhhhhccccceeEEEecCC---------CCEeeeecCCceeEEE
Confidence 89999999999995444 33455678899999999999998 8999999999999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCC-----------------------------------------CCCCCCEEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQT-----------------------------------------EHPWSDCFLSV 645 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~-----------------------------------------~~~~g~~l~Sg 645 (1496)
|+..|.+++.++ ...+|+.+.|+|... ..+.|+++.+|
T Consensus 93 Dl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 93 DLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred eccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence 999999888775 345666666666311 14678899999
Q ss_pred eCCCcEEEEECCCCcEEEEecCCC-C-----------------------------------------------------C
Q 000450 646 GEDFSVALASLETLRVERMFPGHP-N-----------------------------------------------------Y 671 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~l~~~~gH~-~-----------------------------------------------------~ 671 (1496)
...|.+.++|.++.+|+..++-.. . .
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999999999988766655443111 1 1
Q ss_pred cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCcee
Q 000450 672 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1496)
Q Consensus 672 V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~ 724 (1496)
-.+++|+.+|.|++.++.- -..+|||+-..|.+++.+.|..+....
T Consensus 252 Wk~ccfs~dgeYv~a~s~~-------aHaLYIWE~~~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSAR-------AHALYIWEKSIGSLVKILHGTKGEELL 297 (405)
T ss_pred hhheeecCCccEEEecccc-------ceeEEEEecCCcceeeeecCCchhhee
Confidence 2346788888888776643 268999999999999999998876655
No 136
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.44 E-value=4.6e-12 Score=139.85 Aligned_cols=205 Identities=17% Similarity=0.204 Sum_probs=145.8
Q ss_pred CccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 509 EKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+.|.+++ |+|. .+++|+-||+|++|..+. .....+ +....|.++|.+++|+.|
T Consensus 27 ~DsIS~l~------FSP~~~~~~~A~SWD~tVR~wevq~------------~g~~~~-ka~~~~~~PvL~v~Wsdd---- 83 (347)
T KOG0647|consen 27 EDSISALA------FSPQADNLLAAGSWDGTVRIWEVQN------------SGQLVP-KAQQSHDGPVLDVCWSDD---- 83 (347)
T ss_pred ccchheeE------eccccCceEEecccCCceEEEEEec------------CCcccc-hhhhccCCCeEEEEEccC----
Confidence 46788888 5552 677999999999965541 000111 345679999999999987
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~ 665 (1496)
+..+++|+.|+.+++||+.+++ ...+..|.++|..+.|-+.. .-.||++||.|++++.||.+...++.++
T Consensus 84 -----gskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~----~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 84 -----GSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGM----NYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred -----CceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCC----CcceeEecccccceeecccCCCCeeeee
Confidence 8999999999999999999995 56777899999999997762 1359999999999999999875443332
Q ss_pred c-------------------------------------CCCC----CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 666 P-------------------------------------GHPN----YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 666 ~-------------------------------------gH~~----~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
. .+.+ .+.+|+...|.+..+.|+-. |.+.|-
T Consensus 154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE--------Grv~iq 225 (347)
T KOG0647|consen 154 QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE--------GRVAIQ 225 (347)
T ss_pred eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec--------ceEEEE
Confidence 1 1112 35777877777777888887 889888
Q ss_pred ECCCC--eEEEEEeCCCCCcee---eeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 705 DVKTG--ARERVLRGTASHSMF---DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 705 Dl~tg--~~~~~l~gh~a~vi~---~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+..+ +.-.+++-|...... +-..+++.++... +.++.+..||++..|+-
T Consensus 226 ~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-----------gtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 226 YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-----------GTLVTAGSDGTFSFWDK 280 (347)
T ss_pred ecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc-----------ceEEEecCCceEEEecc
Confidence 88776 444566666643211 1122333444333 34556677999999984
No 137
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.43 E-value=1.9e-12 Score=149.66 Aligned_cols=214 Identities=16% Similarity=0.212 Sum_probs=164.0
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC-----CcceEEEE-ecCCccEEEE
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN-----SHVSRQYF-LGHTGAVLCL 576 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~-----s~~~~~~l-~gH~~~V~~L 576 (1496)
..+..|.-.++++++.++.. +...++.+|+|.- |+...+-+-. ..|... .+.+...- ++|...+.++
T Consensus 136 ~~~~~H~~s~~~vals~d~~----~~fsask~g~i~k--w~v~tgk~~~-~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDK----RVFSASKDGTILK--WDVLTGKKDR-YIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred eeeccccCcceEEEeecccc----ceeecCCCcceee--eehhcCcccc-cccccchhhhhccCCCCcccccccceeEEE
Confidence 44678899999999666665 8999999997765 6533221100 011110 01111111 4899999999
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
+.++| +++|++|+.|..|.|||..+.+.++.|.+|.+.|.+++|-.. .+.+.++|.|++|++|++
T Consensus 209 avS~D---------gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g------t~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 209 AVSSD---------GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG------TSELYSASADRSVKVWSI 273 (479)
T ss_pred EEcCC---------CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC------ccceeeeecCCceEEEeh
Confidence 99998 899999999999999999999999999999999999999776 678999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccc
Q 000450 657 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1496)
Q Consensus 657 ~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~ 736 (1496)
+....+.++-||.+.|..|.-..-++.+-+|+.| +++++|++.. +.--++.||.+..-++.|.++
T Consensus 274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrD--------rT~rlwKi~e-esqlifrg~~~sidcv~~In~------ 338 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRD--------RTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND------ 338 (479)
T ss_pred hHhHHHHHHhCCccceeeechhcccceEEecccc--------ceeEEEeccc-cceeeeeCCCCCeeeEEEecc------
Confidence 9999999999999999999988888888888898 9999999943 334467788765555555422
Q ss_pred cceEEcCCccccccceeeccCCcEEeecc
Q 000450 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 737 sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+++.=+.||.|-.|.+
T Consensus 339 ------------~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 339 ------------EHFVSGSDNGSIALWSL 355 (479)
T ss_pred ------------cceeeccCCceEEEeee
Confidence 22333344888999986
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=136.57 Aligned_cols=187 Identities=16% Similarity=0.116 Sum_probs=126.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+++.+.+..+.+|++. |++.+.+......-+..++.++.. .++.++..-+++| |....+-|. ..
T Consensus 202 imsas~dt~i~lw~lk-----Gq~L~~idtnq~~n~~aavSP~GR----Fia~~gFTpDVkV--wE~~f~kdG-----~f 265 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-----GQLLQSIDTNQSSNYDAAVSPDGR----FIAVSGFTPDVKV--WEPIFTKDG-----TF 265 (420)
T ss_pred EEEecCCCcEEEEecC-----CceeeeeccccccccceeeCCCCc----EEEEecCCCCceE--EEEEeccCc-----ch
Confidence 4555666778888875 344444433333333344444444 6777777888999 543332111 11
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC----C---ceEEEE----cccCCCEEE
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS----G---NLITVM----HHHVAPVRQ 626 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t----g---~~l~~~----~~H~~~V~~ 626 (1496)
+.-..+..|+||+..|+.++|+++ .+.++|.|.||++++||++- + +.+.++ ..-.+.-..
T Consensus 266 qev~rvf~LkGH~saV~~~aFsn~---------S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~R 336 (420)
T KOG2096|consen 266 QEVKRVFSLKGHQSAVLAAAFSNS---------STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVR 336 (420)
T ss_pred hhhhhhheeccchhheeeeeeCCC---------cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceE
Confidence 222345678999999999999997 78999999999999999862 1 222222 122233348
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 627 l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~-gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+.++|+ |+.|+.. .-.+++++..++++....+. .|...|.++.|+++|+|+++++. ..++|.-
T Consensus 337 L~lsP~------g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd---------r~vrv~~ 400 (420)
T KOG2096|consen 337 LELSPS------GDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD---------RYVRVIR 400 (420)
T ss_pred EEeCCC------CcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc---------eeeeeec
Confidence 999998 7766654 34679999999988776664 58899999999999999998654 5777764
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.42 E-value=2e-12 Score=153.89 Aligned_cols=245 Identities=16% Similarity=0.155 Sum_probs=165.2
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC-------C
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH-------N 549 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~-------d 549 (1496)
++...+.+++++.||+......|.. .+.+|...|.+.++.+ +.|..+++|+.||.|.||.. ..+. +
T Consensus 114 ~lVsasGDsT~r~Wdvk~s~l~G~~--~~~GH~~SvkS~cf~~---~n~~vF~tGgRDg~illWD~--R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 114 LLVSASGDSTIRPWDVKTSRLVGGR--LNLGHTGSVKSECFMP---TNPAVFCTGGRDGEILLWDC--RCNGVDALEEFD 186 (720)
T ss_pred eEEEccCCceeeeeeeccceeecce--eecccccccchhhhcc---CCCcceeeccCCCcEEEEEE--eccchhhHHHHh
Confidence 3556667889999999988776543 4689999999988554 33458999999999999543 2221 0
Q ss_pred CC----CCccccCC---cceEEEEecCCcc----EEEEEEecCCCCcccCcCCCEEEEEeC-CCcEEEEECCCCceE---
Q 000450 550 SP----GASLKVNS---HVSRQYFLGHTGA----VLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGSGNLI--- 614 (1496)
Q Consensus 550 ~~----~~~~d~~s---~~~~~~l~gH~~~----V~~La~spd~~~~~~~~~~~~L~SGs~-DgtV~lWDl~tg~~l--- 614 (1496)
.. .+.-.... .+.++.-..|.+. |+.+.| .| ...|||+|. |+.|+|||+++....
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kD---------e~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KD---------ESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-ec---------cceeeeccCCCcceEEEeeccccccccc
Confidence 00 00000000 0111222344444 444555 34 688998887 999999999865422
Q ss_pred -----EEEccc---CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC--cEEEEecCCCCCc--EEEEEcCCCC
Q 000450 615 -----TVMHHH---VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--RVERMFPGHPNYP--AKVVWDCPRG 682 (1496)
Q Consensus 615 -----~~~~~H---~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~--~~l~~~~gH~~~V--~~V~~spdg~ 682 (1496)
..+..| .-.+.++..... |.++...|.|++|.+||+... .++..+.+|...- ..-..+||+.
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDss------Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSS------GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCC------CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 223333 235667776655 777777777999999999764 3556666665422 2335689999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeE-EEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEE
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGAR-ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFR 761 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~-~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir 761 (1496)
++++|+.| ...|+|.+.+-+. ...+.||.-++..+.+++ +....++.++.|.+++
T Consensus 331 ~l~SgSsd--------~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p----------------S~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 331 SLLSGSSD--------EQAYIWVVSSPEAPPALLLGHTREVTTVRWLP----------------SATTPVATCSDDFRVK 386 (720)
T ss_pred eEeccCCC--------cceeeeeecCccCChhhhhCcceEEEEEeecc----------------ccCCCceeeccCcceE
Confidence 99998888 9999999988654 678899998888887663 2334566778899999
Q ss_pred eeccccc
Q 000450 762 QSQIQND 768 (1496)
Q Consensus 762 ~W~l~~~ 768 (1496)
+|++.+.
T Consensus 387 iW~l~~~ 393 (720)
T KOG0321|consen 387 IWRLSNG 393 (720)
T ss_pred EEeccCc
Confidence 9998443
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.42 E-value=4.1e-12 Score=139.18 Aligned_cols=220 Identities=19% Similarity=0.237 Sum_probs=148.0
Q ss_pred ccCCccEEEEEeec-cccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 506 VHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s-~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
.+|.-.|++..+-+ +.. .+.+++.|.+++| || ..+.+....|+ -.+.|.+-+++|.-
T Consensus 98 ~~Hky~iss~~WyP~DtG----mFtssSFDhtlKV--WD-------------tnTlQ~a~~F~-me~~VYshamSp~a-- 155 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTG----MFTSSSFDHTLKV--WD-------------TNTLQEAVDFK-MEGKVYSHAMSPMA-- 155 (397)
T ss_pred ccceeeeeeeEEeeecCc----eeecccccceEEE--ee-------------cccceeeEEee-cCceeehhhcChhh--
Confidence 45666777765333 222 7889999999999 43 32333333332 34567777888861
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVER 663 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~ 663 (1496)
....++++|..|-.|++-|+.+|.+-+++.+|.+.|.+|.|+|.. .-.|++|+.|+.|++||++.- .|.+
T Consensus 156 ----~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~-----e~vLatgsaDg~irlWDiRrasgcf~ 226 (397)
T KOG4283|consen 156 ----MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS-----EWVLATGSADGAIRLWDIRRASGCFR 226 (397)
T ss_pred ----hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc-----eeEEEecCCCceEEEEEeecccceeE
Confidence 124688899999999999999999999999999999999999983 447899999999999999864 3433
Q ss_pred Ee--------------cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeec
Q 000450 664 MF--------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 664 ~~--------------~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
.+ ..|.+.|..++|+.|+.++++.+.| ..+++|+++.|+---.-.|...+.-..+|--
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd--------~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~ 298 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD--------DRIRVWNMESGRNTLREFGPIIHNQTTSFAV 298 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccchhhhhccCc--------cceEEeecccCcccccccccccccccccceE
Confidence 33 3566788999999999999999998 8999999999865322222111111100000
Q ss_pred ccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 730 ~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+. ...++....--...+--++++.+...||.|+.
T Consensus 299 ~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 299 HIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred EEe-ecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence 000 01111111111124455677777888888875
No 141
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.42 E-value=7.1e-12 Score=142.24 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=140.6
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+.+|+..|..+.+.+ |+-..|++|++|.+|.| |+.-.++ ....--+++..|.||+.+|.-++|||.
T Consensus 77 v~GHt~~vLDi~w~P---fnD~vIASgSeD~~v~v--W~IPe~~------l~~~ltepvv~L~gH~rrVg~V~wHPt--- 142 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCP---FNDCVIASGSEDTKVMV--WQIPENG------LTRDLTEPVVELYGHQRRVGLVQWHPT--- 142 (472)
T ss_pred ccCccccccccccCc---cCCceeecCCCCceEEE--EECCCcc------cccCcccceEEEeecceeEEEEeeccc---
Confidence 578999998877444 22248999999999999 4422211 111112678899999999999999996
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
-.+.|+|++.|.+|.+||+.+|+.+.++. |...|+++.|+.+ |.++++.+.|+.|||||.++++.+..
T Consensus 143 -----A~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d------Gs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 143 -----APNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD------GSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred -----chhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC------CceeeeecccceeEEEcCCCCcEeee
Confidence 27899999999999999999999988887 9999999999999 99999999999999999999999988
Q ss_pred ecCCCC-CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 665 FPGHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 665 ~~gH~~-~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
-.+|.+ ....+.|-.+++++-||-. ..++ ..+-+||...
T Consensus 211 ~~~heG~k~~Raifl~~g~i~tTGfs---r~se--Rq~aLwdp~n 250 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFLASGKIFTTGFS---RMSE--RQIALWDPNN 250 (472)
T ss_pred cccccCCCcceeEEeccCceeeeccc---cccc--cceeccCccc
Confidence 888876 5677889899996555543 3334 7899999865
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=7.8e-12 Score=138.78 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=145.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+++.++.++++|.... .+... ..|..++.+.+|..+. .+++|+.||.|+.++..
T Consensus 28 LLvssWDgslrlYdv~~~----~l~~~-~~~~~plL~c~F~d~~-----~~~~G~~dg~vr~~Dln-------------- 83 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPAN----SLKLK-FKHGAPLLDCAFADES-----TIVTGGLDGQVRRYDLN-------------- 83 (323)
T ss_pred EEEEeccCcEEEEeccch----hhhhh-eecCCceeeeeccCCc-----eEEEeccCceEEEEEec--------------
Confidence 455567778888887654 22222 3477888888755443 69999999999995443
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
++ ....+..|...|.|+.+.+. ...+++||.|++|++||.+.......+.. ...|.++...
T Consensus 84 -~~-~~~~igth~~~i~ci~~~~~---------~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~------- 144 (323)
T KOG1036|consen 84 -TG-NEDQIGTHDEGIRCIEYSYE---------VGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS------- 144 (323)
T ss_pred -CC-cceeeccCCCceEEEEeecc---------CCeEEEcccCccEEEEecccccccccccc-CceEEEEecc-------
Confidence 22 23445679999999999986 68899999999999999986544444433 3467777765
Q ss_pred CCCEEEEEeCCCcEEEEECCCC---------------cEEE---------------------------------EecCCC
Q 000450 638 WSDCFLSVGEDFSVALASLETL---------------RVER---------------------------------MFPGHP 669 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~---------------~~l~---------------------------------~~~gH~ 669 (1496)
++.|+.|+.|..|.+||+++. ++++ .|..|.
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred -CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 457888888888888888753 1222 222342
Q ss_pred C---------CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 670 N---------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 670 ~---------~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
. +|++|+|+|-.++++||+.| |.|-+||+.+.+.++.+.+-...+-...||
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD--------G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSD--------GIVNIWDLFNRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCC--------ceEEEccCcchhhhhhccCCCCceEEEEec
Confidence 2 78999999999999999998 999999999999999988775444444455
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.40 E-value=4.1e-12 Score=146.92 Aligned_cols=227 Identities=15% Similarity=0.218 Sum_probs=169.2
Q ss_pred CCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC
Q 000450 469 ENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH 548 (1496)
Q Consensus 469 ~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~ 548 (1496)
-+||. .+.+..+-+++.+||+..+.+..+. .+..-.....+++..++.. ..+.++.||.|.| ||
T Consensus 474 ~pdgr---tLivGGeastlsiWDLAapTprika--eltssapaCyALa~spDak----vcFsccsdGnI~v--wD----- 537 (705)
T KOG0639|consen 474 LPDGR---TLIVGGEASTLSIWDLAAPTPRIKA--ELTSSAPACYALAISPDAK----VCFSCCSDGNIAV--WD----- 537 (705)
T ss_pred cCCCc---eEEeccccceeeeeeccCCCcchhh--hcCCcchhhhhhhcCCccc----eeeeeccCCcEEE--EE-----
Confidence 34662 4777788899999999988774332 2222233445565444443 6778889999999 33
Q ss_pred CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEE
Q 000450 549 NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQII 628 (1496)
Q Consensus 549 d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~ 628 (1496)
......++.|.||++.+.||.+++| |..|-+|+-|.+||.||+++++.+... .....|.++-
T Consensus 538 --------Lhnq~~VrqfqGhtDGascIdis~d---------GtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg 599 (705)
T KOG0639|consen 538 --------LHNQTLVRQFQGHTDGASCIDISKD---------GTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLG 599 (705)
T ss_pred --------cccceeeecccCCCCCceeEEecCC---------CceeecCCCccceeehhhhhhhhhhhh-hhhhhheecc
Confidence 3344678999999999999999997 899999999999999999998765432 2356799999
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
.+|. +..++.|-+.+.|.|.... +...+++.-|.+.|.+++|.+-|+++++.+.| +-+..|-+.-
T Consensus 600 ~cP~------~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkD--------nlLnawrtPy 664 (705)
T KOG0639|consen 600 YCPT------GDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD--------NLLNAWRTPY 664 (705)
T ss_pred cCCC------ccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCch--------hhhhhccCcc
Confidence 9998 8999999999999988865 44456777899999999999999999999998 8999999988
Q ss_pred CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccc
Q 000450 709 GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLL 751 (1496)
Q Consensus 709 g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l 751 (1496)
|..+.....-. .++ .|+ ++.+ +..|.+|+-.....+
T Consensus 665 GasiFqskE~S-sVl---sCD-IS~d--dkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 665 GASIFQSKESS-SVL---SCD-ISFD--DKYIVTGSGDKKATV 700 (705)
T ss_pred ccceeeccccC-cce---eee-eccC--ceEEEecCCCcceEE
Confidence 88876655333 333 342 2222 445666665444333
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=6.2e-12 Score=144.96 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=133.2
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+|+..|-++++.... -+.|++|+.|.+|++ ||..++++..++..|.+.|.++.|+|.
T Consensus 240 ~gHTdavl~Ls~n~~~---~nVLaSgsaD~TV~l---------------WD~~~g~p~~s~~~~~k~Vq~l~wh~~---- 297 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNF---RNVLASGSADKTVKL---------------WDVDTGKPKSSITHHGKKVQTLEWHPY---- 297 (463)
T ss_pred ccchHHHHHHHhcccc---ceeEEecCCCceEEE---------------EEcCCCCcceehhhcCCceeEEEecCC----
Confidence 4677777665533322 248999999999999 446678999999999999999999996
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEE
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERM 664 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~ 664 (1496)
-.+.|++|+.|++|.+.|.+........-...+.|-.++|.|.. ...++++..||+|+-+|+|.. +++.+
T Consensus 298 ----~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s-----e~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 298 ----EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS-----ENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred ----CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC-----ceeEEEecCCceEEeeecCCCCCceeE
Confidence 37899999999999999998533332222235679999999984 568889999999999999875 89999
Q ss_pred ecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 665 FPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+..|.++|.++++++.- .+|++++.| +.|++|++..
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d--------~~Vklw~~~~ 405 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTD--------KVVKLWKFDV 405 (463)
T ss_pred EEeccCCcceEEecCCCCcceeecccc--------ceEEEEeecC
Confidence 99999999999998765 467777777 9999999854
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.4e-12 Score=164.65 Aligned_cols=217 Identities=15% Similarity=0.157 Sum_probs=165.1
Q ss_pred eeecccccCccccccccCCCC--CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~--~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~ 554 (1496)
.++.+..+|.|-+|+...-.. ....+.+...|++.|..+.|.. |.++.+++|..||+|.||+...+... ..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~---~q~nlLASGa~~geI~iWDlnn~~tP---~~- 154 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP---FQGNLLASGADDGEILIWDLNKPETP---FT- 154 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc---cCCceeeccCCCCcEEEeccCCcCCC---CC-
Confidence 355556777888888765211 1144556688999999977444 44468999999999999554432221 00
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCC--CEEEEEECCC
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA--PVRQIILSPP 632 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~--~V~~l~~sPd 632 (1496)
.+ -..-.+.|.||+|+.. ..+.|+||+.++++.|||++..+.+-.+..|.+ .+..+.|+|+
T Consensus 155 ----~~-----~~~~~~eI~~lsWNrk--------vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 155 ----PG-----SQAPPSEIKCLSWNRK--------VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred ----CC-----CCCCcccceEeccchh--------hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 00 0113467999999875 378999999999999999999988888877765 3678999999
Q ss_pred CCCCCCCCEEEEEeCC---CcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 633 QTEHPWSDCFLSVGED---FSVALASLETL-RVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 633 ~~~~~~g~~l~Sgs~D---gsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
. ...++.++.| -.|.+||+|.- .+++.+.+|...|.++.|++.+ .+|++++.| +.|.+|+.+
T Consensus 218 ~-----aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD--------~~ii~wN~~ 284 (1049)
T KOG0307|consen 218 H-----ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD--------NRIICWNPN 284 (1049)
T ss_pred C-----ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC--------CCeeEecCC
Confidence 5 4566666654 47899999864 5678889999999999999977 788888888 999999999
Q ss_pred CCeEEEEEeCCCCCceeeeeecc
Q 000450 708 TGARERVLRGTASHSMFDHFCKG 730 (1496)
Q Consensus 708 tg~~~~~l~gh~a~vi~~~~~~~ 730 (1496)
||+.+..+........-++||++
T Consensus 285 tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 285 TGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred CceEeeecCCCCcceeeeeecCC
Confidence 99999999887777777889964
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.38 E-value=8e-12 Score=144.56 Aligned_cols=202 Identities=15% Similarity=0.089 Sum_probs=158.8
Q ss_pred ccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
..+.+++||+... .+...+.+|...|+++.|.-... +|+.++..|+|.|... .++..
T Consensus 99 ~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~De----yiAsvs~gGdiiih~~---------------~t~~~ 155 (673)
T KOG4378|consen 99 QSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDE----YIASVSDGGDIIIHGT---------------KTKQK 155 (673)
T ss_pred cCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcc----eeEEeccCCcEEEEec---------------ccCcc
Confidence 4568999998742 34556789999999998554443 8999999999998332 23333
Q ss_pred EEEEecC-CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEE-cccCCCEEEEEECCCCCCCCCCC
Q 000450 563 RQYFLGH-TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 563 ~~~l~gH-~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~-~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
...|... ...|.-|.|+|. ...+|.+++.||+|.+||+....+++.+ ..|..|...|+|+|.+ ..
T Consensus 156 tt~f~~~sgqsvRll~ys~s--------kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn-----e~ 222 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPS--------KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN-----EA 222 (673)
T ss_pred ccceecCCCCeEEEeecccc--------cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc-----cc
Confidence 3344333 234568889985 2568889999999999999877776554 5799999999999984 66
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCC
Q 000450 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTA 719 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~ 719 (1496)
+|++++.|+.|.+||....+....+. ...+..+|+|.++|-+|+.|... |.|+.||++. ...+.++..|.
T Consensus 223 l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~--------G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 223 LLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSK--------GELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred eEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCC--------ceEEEEecccCCCCceEeeecc
Confidence 99999999999999998766654443 45578999999999999999988 9999999986 56799999999
Q ss_pred CCceeeeeec
Q 000450 720 SHSMFDHFCK 729 (1496)
Q Consensus 720 a~vi~~~~~~ 729 (1496)
+.+.++.|-+
T Consensus 294 ~sVt~vafq~ 303 (673)
T KOG4378|consen 294 ASVTRVAFQP 303 (673)
T ss_pred cceeEEEeee
Confidence 9988887663
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.38 E-value=7.6e-12 Score=149.09 Aligned_cols=258 Identities=15% Similarity=0.172 Sum_probs=169.6
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE--EecCCccEEEEEEec
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY--FLGHTGAVLCLAAHR 580 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~--l~gH~~~V~~La~sp 580 (1496)
..+..|...|..+.+.+... .||+++.|.+++. |+ +++..++.. +.||++.|.+++|+|
T Consensus 94 k~~~aH~nAifDl~wapge~----~lVsasGDsT~r~--Wd-------------vk~s~l~G~~~~~GH~~SvkS~cf~~ 154 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGES----LLVSASGDSTIRP--WD-------------VKTSRLVGGRLNLGHTGSVKSECFMP 154 (720)
T ss_pred cccccccceeEeeccCCCce----eEEEccCCceeee--ee-------------eccceeecceeecccccccchhhhcc
Confidence 44678999999988666554 8999999999998 44 444444444 889999999999999
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---------------------------eEEEEcccCCCEEE---EEEC
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------------------LITVMHHHVAPVRQ---IILS 630 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---------------------------~l~~~~~H~~~V~~---l~~s 630 (1496)
. +...|++|+.||.|.|||++-.. .++....|...|.+ +.+.
T Consensus 155 ~--------n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 155 T--------NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF 226 (720)
T ss_pred C--------CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence 7 37899999999999999997321 12233445555555 5555
Q ss_pred CCCCCCCCCCEEEEEeC-CCcEEEEECCCCcEEE--------EecCC---CCCcEEEEEcCCCCEEEEEEcCCCCCCCCC
Q 000450 631 PPQTEHPWSDCFLSVGE-DFSVALASLETLRVER--------MFPGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDAV 698 (1496)
Q Consensus 631 Pd~~~~~~g~~l~Sgs~-DgsV~lWdl~~~~~l~--------~~~gH---~~~V~~V~~spdg~~L~tgs~D~sg~~D~d 698 (1496)
.| ...|+|+|. |+.|+|||++...+.. .++.| .-.+.++.....|.+|.+.|.|
T Consensus 227 kD------e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD-------- 292 (720)
T KOG0321|consen 227 KD------ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD-------- 292 (720)
T ss_pred ec------cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC--------
Confidence 56 678888887 9999999998754322 22334 2256777777788999999999
Q ss_pred CEEEEEECCCC--eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccccc
Q 000450 699 DVLFIWDVKTG--ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFST 776 (1496)
Q Consensus 699 g~V~VWDl~tg--~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~ 776 (1496)
++||.|++.+- ..+..+.||.-..+.+.-| +.+. +....++. .|....+|.+.+.+...+...
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~--lSpd--------~~~l~SgS-----sd~~ayiw~vs~~e~~~~~l~ 357 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE--LSPD--------DCSLLSGS-----SDEQAYIWVVSSPEAPPALLL 357 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeee--cCCC--------CceEeccC-----CCcceeeeeecCccCChhhhh
Confidence 99999999763 3466777776555444333 2222 33333333 388889998866554333222
Q ss_pred CCCCCccccccCCCCCCCCCCccccccccccccccCCCCcceEEEechhhhcccc
Q 000450 777 ISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPY 831 (1496)
Q Consensus 777 ~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~fd~e~l~~~~ 831 (1496)
-+...-.-++ . .|. .+.|+- +| -.++.+..++|++-+.+.
T Consensus 358 Ght~eVt~V~------w---~pS----~~t~v~-Tc-SdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 358 GHTREVTTVR------W---LPS----ATTPVA-TC-SDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred CcceEEEEEe------e---ccc----cCCCce-ee-ccCcceEEEeccCchhhc
Confidence 1111000000 0 111 122442 56 467888889998777654
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.7e-11 Score=149.73 Aligned_cols=229 Identities=18% Similarity=0.183 Sum_probs=173.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+...++.++.|+...... .-.++..+...|.+++.-+ ..+++|+.+++|.++.++.
T Consensus 28 i~tcgsdg~ir~~~~~sd~e---~P~ti~~~g~~v~~ia~~s------~~f~~~s~~~tv~~y~fps------------- 85 (933)
T KOG1274|consen 28 ICTCGSDGDIRKWKTNSDEE---EPETIDISGELVSSIACYS------NHFLTGSEQNTVLRYKFPS------------- 85 (933)
T ss_pred EEEecCCCceEEeecCCccc---CCchhhccCceeEEEeecc------cceEEeeccceEEEeeCCC-------------
Confidence 45556677888898765421 1112233667777766322 2789999999999976652
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
++....+.--+-++++++|+-+ |.+++.||.|-.|++-++.......++++|.++|.+|.|+|.
T Consensus 86 --~~~~~iL~Rftlp~r~~~v~g~---------g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~----- 149 (933)
T KOG1274|consen 86 --GEEDTILARFTLPIRDLAVSGS---------GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK----- 149 (933)
T ss_pred --CCccceeeeeeccceEEEEecC---------CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC-----
Confidence 2222223334557889999876 899999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCC--------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGH--------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH--------~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
++.||+.+.||.|++||++++.+..++.+- ...+..++|+|++..+++.+.| +.|++|+..++
T Consensus 150 -~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--------~~Vkvy~r~~w 220 (933)
T KOG1274|consen 150 -GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--------NTVKVYSRKGW 220 (933)
T ss_pred -CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC--------CeEEEEccCCc
Confidence 999999999999999999999887776542 2345788999999888888888 99999999999
Q ss_pred eEEEEEeCCCCCc--eeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccc
Q 000450 710 ARERVLRGTASHS--MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1496)
Q Consensus 710 ~~~~~l~gh~a~v--i~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~ 770 (1496)
+....|.+-.... ....|. .+|.+..++.+ |+.|.+|+.+..++
T Consensus 221 e~~f~Lr~~~~ss~~~~~~ws------------PnG~YiAAs~~-----~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWS------------PNGKYIAASTL-----DGQILVWNVDTHER 266 (933)
T ss_pred eeheeecccccccceEEEEEc------------CCCcEEeeecc-----CCcEEEEecccchh
Confidence 9888876543322 222232 22666666555 99999999886554
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.38 E-value=2e-12 Score=149.42 Aligned_cols=206 Identities=14% Similarity=0.118 Sum_probs=153.6
Q ss_pred ecccccCccccccccCCCC---CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 479 DLTFCQDTVPRSEHVDSRQ---AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~---~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
..+...+-+++||+..+.. ..++. .......+++..+.++.. .|++|++-.++.| ||+.
T Consensus 434 VyTgGkgcVKVWdis~pg~k~PvsqLd--cl~rdnyiRSckL~pdgr----tLivGGeastlsi--WDLA---------- 495 (705)
T KOG0639|consen 434 VYTGGKGCVKVWDISQPGNKSPVSQLD--CLNRDNYIRSCKLLPDGR----TLIVGGEASTLSI--WDLA---------- 495 (705)
T ss_pred eEecCCCeEEEeeccCCCCCCcccccc--ccCcccceeeeEecCCCc----eEEeccccceeee--eecc----------
Confidence 3444567899999876422 11111 122245677777666665 8999999888998 5521
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
..+......+..-.-...+|+.+|| .++.+++..||.|.|||+.+...++.|.+|+..+.||.++++
T Consensus 496 -apTprikaeltssapaCyALa~spD---------akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d--- 562 (705)
T KOG0639|consen 496 -APTPRIKAELTSSAPACYALAISPD---------AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD--- 562 (705)
T ss_pred -CCCcchhhhcCCcchhhhhhhcCCc---------cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC---
Confidence 1122222233333345678899998 799999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
|..|.+|+-|.+||.||+++++.+.... ..+.|.++..+|.+.+|++|-.+ +.+.|-.. ++.....+
T Consensus 563 ---GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen--------s~vevlh~-skp~kyql 629 (705)
T KOG0639|consen 563 ---GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN--------SNVEVLHT-SKPEKYQL 629 (705)
T ss_pred ---CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc--------CcEEEEec-CCccceee
Confidence 8999999999999999999988765532 34579999999999999999887 66666554 34445677
Q ss_pred eCCCCCceeeeee
Q 000450 716 RGTASHSMFDHFC 728 (1496)
Q Consensus 716 ~gh~a~vi~~~~~ 728 (1496)
.-|.+.++.+.|.
T Consensus 630 hlheScVLSlKFa 642 (705)
T KOG0639|consen 630 HLHESCVLSLKFA 642 (705)
T ss_pred cccccEEEEEEec
Confidence 7788888887765
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.2e-12 Score=165.21 Aligned_cols=200 Identities=19% Similarity=0.211 Sum_probs=155.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.|+.|.+||.|.+|+-+.+.. -.....+.++..|++.|..|.|++. .+.+|+||+.||.|.||
T Consensus 82 lIaGG~edG~I~ly~p~~~~~---------~~~~~~la~~~~h~G~V~gLDfN~~--------q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIA---------NASEEVLATKSKHTGPVLGLDFNPF--------QGNLLASGADDGEILIW 144 (1049)
T ss_pred eeeccccCCceEEecchhhcc---------CcchHHHhhhcccCCceeeeecccc--------CCceeeccCCCCcEEEe
Confidence 588889999999954332211 1123456677889999999999997 36799999999999999
Q ss_pred ECCCCceEEEEc--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC--CcEEEEEcCCCC
Q 000450 607 DLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRG 682 (1496)
Q Consensus 607 Dl~tg~~l~~~~--~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~--~V~~V~~spdg~ 682 (1496)
|+...+.-..+. .-...|.+++|+... .++|+|++.++.+.|||++..+.+..+..|.+ .+..+.|+|+..
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkv-----qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKV-----SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhh-----hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 998755444432 135679999998764 78999999999999999999988888876665 467899999876
Q ss_pred -EEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcE
Q 000450 683 -YIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1496)
Q Consensus 683 -~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~i 760 (1496)
.|++++.| |..-.|.+||++.- ..++++++|...++.+.+|. .....++++.+|+++
T Consensus 220 Tql~~As~d-----d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~----------------~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 220 TQLLVASGD-----DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP----------------QDPRLLLSSGKDNRI 278 (1049)
T ss_pred eeeeeecCC-----CCCceeEeecccccCCchhhhcccccceeeeccCC----------------CCchhhhcccCCCCe
Confidence 55556655 66679999999864 56899999999999988883 233456778889999
Q ss_pred Eeecccccc
Q 000450 761 RQSQIQNDE 769 (1496)
Q Consensus 761 r~W~l~~~e 769 (1496)
..|+.++.|
T Consensus 279 i~wN~~tgE 287 (1049)
T KOG0307|consen 279 ICWNPNTGE 287 (1049)
T ss_pred eEecCCCce
Confidence 999976544
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.35 E-value=1.2e-09 Score=126.78 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=95.6
Q ss_pred cEEEEEEecCCCCcccCcCCCEE-EEEeCCCcEEEEECCCCceEEEEcccCC-------CEEEEEECCCCCCCCCCCEE-
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSGNLITVMHHHVA-------PVRQIILSPPQTEHPWSDCF- 642 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L-~SGs~DgtV~lWDl~tg~~l~~~~~H~~-------~V~~l~~sPd~~~~~~g~~l- 642 (1496)
...++.|+|+ +++| +++..|+.|++||+.+++.+..+..+.. ....+.|+|+ ++.+
T Consensus 158 ~~~~~~~s~d---------g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d------g~~~~ 222 (300)
T TIGR03866 158 RPRFAEFTAD---------GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD------GKTAF 222 (300)
T ss_pred CccEEEECCC---------CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC------CCEEE
Confidence 4577899987 6666 5666799999999999988776653321 1246889998 7764
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEc-CCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCR-DHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~-D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
++.+.++.+.+||+++++.+..+. +...+.+++|+|++++|++++. + ++|+|||++++++++.+...
T Consensus 223 ~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~--------~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 223 VALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVS--------NDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCC--------CeEEEEECCCCcEEEEEEcc
Confidence 445667789999999998876653 4457899999999999988754 4 89999999999998888654
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.1e-11 Score=134.99 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=152.0
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE-E-ecCCccEEEEEEec
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-F-LGHTGAVLCLAAHR 580 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~-l-~gH~~~V~~La~sp 580 (1496)
..+++|.+.|++++|.++.. .+++.+.|+.|++|..+.+.. ...++++. + .+| -+.+.|.|
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK----~lat~~~Dr~Ir~w~~~DF~~----------~eHr~~R~nve~dh---pT~V~Fap 142 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGK----KLATISGDRSIRLWDVRDFEN----------KEHRCIRQNVEYDH---PTRVVFAP 142 (420)
T ss_pred hhhhccCCceeeeEEcCCCc----eeEEEeCCceEEEEecchhhh----------hhhhHhhccccCCC---ceEEEECC
Confidence 45799999999999888888 999999999999966542211 11122221 1 233 57889999
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---eEE---------EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LIT---------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---~l~---------~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
| -..++++.-...++++|-+...+ .-+ .-+.|.-+|..+-..-. +.+++|++.|
T Consensus 143 D--------c~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~------~k~imsas~d 208 (420)
T KOG2096|consen 143 D--------CKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN------AKYIMSASLD 208 (420)
T ss_pred C--------cceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC------ceEEEEecCC
Confidence 8 25677777777789999875322 111 12235556666666554 7899999999
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC---CCe-----EEEEEeCCCC
Q 000450 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK---TGA-----RERVLRGTAS 720 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~---tg~-----~~~~l~gh~a 720 (1496)
..|.|||++ |+.+..+......-+..+.||+|+++++++.. --|+||++- .|+ .+..|.||++
T Consensus 209 t~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT--------pDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 209 TKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT--------PDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred CcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC--------CCceEEEEEeccCcchhhhhhhheeccchh
Confidence 999999999 89988887666667788999999999998876 669999973 332 4577899999
Q ss_pred CceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 721 HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 721 ~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+....|.+ .+..++++++||++|+|+.
T Consensus 280 aV~~~aFsn-----------------~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 280 AVLAAAFSN-----------------SSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred heeeeeeCC-----------------CcceeEEEecCCcEEEeec
Confidence 998876662 1234567889999999995
No 153
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=7.2e-12 Score=148.04 Aligned_cols=209 Identities=20% Similarity=0.217 Sum_probs=156.3
Q ss_pred ccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd 581 (1496)
++..|...|++++ |+|. -+++++.||.+.+|+++.-. .-....-+++.+|++|.++|.|+++.+.
T Consensus 289 tl~s~~d~ir~l~------~~~sep~lit~sed~~lk~WnLqk~~-------~s~~~~~epi~tfraH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 289 TLRSHDDCIRALA------FHPSEPVLITASEDGTLKLWNLQKAK-------KSAEKDVEPILTFRAHEGPVLCVVVPSN 355 (577)
T ss_pred eeecchhhhhhhh------cCCCCCeEEEeccccchhhhhhcccC-------CccccceeeeEEEecccCceEEEEecCC
Confidence 4556777777776 5544 89999999999996654200 0112234788999999999999999987
Q ss_pred CCCcccCcCCCEEEEEeCCCcEEEEECCCC----------ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE
Q 000450 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSG----------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1496)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg----------~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV 651 (1496)
++.+.||+.||+|+.|++... .+...+.||++.|+.+++++. .+.|++++.||+|
T Consensus 356 ---------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~------~~~Llscs~DgTv 420 (577)
T KOG0642|consen 356 ---------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST------KDRLLSCSSDGTV 420 (577)
T ss_pred ---------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc------ccceeeecCCceE
Confidence 899999999999999965421 244788999999999999998 6789999999999
Q ss_pred EEEECCCCcE--------------------------------------------EEEecC-------CCCCcEEEEEcCC
Q 000450 652 ALASLETLRV--------------------------------------------ERMFPG-------HPNYPAKVVWDCP 680 (1496)
Q Consensus 652 ~lWdl~~~~~--------------------------------------------l~~~~g-------H~~~V~~V~~spd 680 (1496)
++|+.....+ ++.+.. -...+..|.++|.
T Consensus 421 r~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~ 500 (577)
T KOG0642|consen 421 RLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT 500 (577)
T ss_pred EeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC
Confidence 9998754322 011100 0124677899999
Q ss_pred CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcE
Q 000450 681 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1496)
Q Consensus 681 g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~i 760 (1496)
..+.+++..| +.|+++|..+|..+.....|...+..+.+. ++ |-. +...+.|+++
T Consensus 501 ~~~~~~~hed--------~~Ir~~dn~~~~~l~s~~a~~~svtslai~----~n--------g~~-----l~s~s~d~sv 555 (577)
T KOG0642|consen 501 ADITFTAHED--------RSIRFFDNKTGKILHSMVAHKDSVTSLAID----PN--------GPY-----LMSGSHDGSV 555 (577)
T ss_pred CCeeEecccC--------Cceecccccccccchheeeccceecceeec----CC--------Cce-----EEeecCCcee
Confidence 9999999888 999999999999999999888766665433 12 222 2233448999
Q ss_pred Eeecc
Q 000450 761 RQSQI 765 (1496)
Q Consensus 761 r~W~l 765 (1496)
+.|++
T Consensus 556 ~l~kl 560 (577)
T KOG0642|consen 556 RLWKL 560 (577)
T ss_pred ehhhc
Confidence 99876
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.7e-10 Score=131.92 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=105.9
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccE--EEEEEecCCCCcccCcCCCEEEEEeCCCcEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAV--LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V--~~La~spd~~~~~~~~~~~~L~SGs~DgtV~ 604 (1496)
.|+..+.+|.|.+ |+ .....+++.+.. .+.| ++++.+++ +.+||+||..|.|.
T Consensus 358 ~l~~~~~~GeV~v--~n-------------l~~~~~~~rf~D-~G~v~gts~~~S~n---------g~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 358 ELLASGGTGEVYV--WN-------------LRQNSCLHRFVD-DGSVHGTSLCISLN---------GSYLATGSDSGIVN 412 (514)
T ss_pred EEEEEcCCceEEE--Ee-------------cCCcceEEEEee-cCccceeeeeecCC---------CceEEeccCcceEE
Confidence 4555556777766 33 333455555543 2333 45666665 78999999999999
Q ss_pred EEECCC------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE--eCCCcEEEEECCCCcEEEEecCC---CCCcE
Q 000450 605 IWDLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLETLRVERMFPGH---PNYPA 673 (1496)
Q Consensus 605 lWDl~t------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg--s~DgsV~lWdl~~~~~l~~~~gH---~~~V~ 673 (1496)
|||.++ .+++..+..-+..|+++.|+|+ .+++|-+ ..+..+||-.+........|+.. -+.|+
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d------~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD------AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcc------hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 999653 4567777777788999999999 7766554 45789999999887776666643 34689
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
|++|+|.+.||++|..+ |.|.+|.+.
T Consensus 487 c~aFSP~sG~lAvGNe~--------grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEA--------GRVHLFKLH 512 (514)
T ss_pred EEEecCCCceEEeecCC--------CceeeEeec
Confidence 99999999999999998 999999864
No 155
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=125.49 Aligned_cols=187 Identities=13% Similarity=0.084 Sum_probs=132.1
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~ 582 (1496)
..+++|.+.+..++ |+-+.+++|+ ||.|+-|.|...........+|....+ .++=.---..|+++...|.
T Consensus 56 v~eqahdgpiy~~~------f~d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P--~~~~~~evPeINam~ldP~- 125 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLA------FHDDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIP--MQVDAVEVPEINAMWLDPS- 125 (325)
T ss_pred eeccccCCCeeeee------eehhheeecc-CceEEEeeehhhhhhccchhhhhhcCc--cccCcccCCccceeEeccC-
Confidence 44589999999988 4444455554 699999999854432222334544322 1110111236888888886
Q ss_pred CCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000450 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1496)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l 662 (1496)
.+-++.++.|+.+..||+++|+..+++++|++.|.++.-... ...++||++||++|+||+++++++
T Consensus 126 --------enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~------~~qilsG~EDGtvRvWd~kt~k~v 191 (325)
T KOG0649|consen 126 --------ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA------NGQILSGAEDGTVRVWDTKTQKHV 191 (325)
T ss_pred --------CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc------CcceeecCCCccEEEEecccccee
Confidence 344555558999999999999999999999999999987433 457899999999999999999999
Q ss_pred EEecCCC----------CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE--eCCCCCcee
Q 000450 663 RMFPGHP----------NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL--RGTASHSMF 724 (1496)
Q Consensus 663 ~~~~gH~----------~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l--~gh~a~vi~ 724 (1496)
.++.... ..|.+++ -+.++|++|+. ..+.+|.+++.++..++ .+|...+++
T Consensus 192 ~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG---------p~lslwhLrsse~t~vfpipa~v~~v~F 254 (325)
T KOG0649|consen 192 SMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG---------PKLSLWHLRSSESTCVFPIPARVHLVDF 254 (325)
T ss_pred EEeccccChhhcCcccCceeEEEe--ccCceEEecCC---------CceeEEeccCCCceEEEecccceeEeee
Confidence 8875322 1344444 45679998876 48999999998776655 454444443
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.30 E-value=3.3e-11 Score=139.62 Aligned_cols=239 Identities=13% Similarity=0.107 Sum_probs=169.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
.+.+..+..+++|......+.........+. .-.|+...+... +++.|+.+|.++| |+ .
T Consensus 50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~----y~~sgG~~~~Vki--wd-------------l 108 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSL----YEISGGQSGCVKI--WD-------------L 108 (673)
T ss_pred EeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcce----eeeccCcCceeee--hh-------------h
Confidence 3455567778888877654433333333322 334444444443 8899999999999 44 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCC-CEEEEEECCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA-PVRQIILSPPQTEH 636 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~-~V~~l~~sPd~~~~ 636 (1496)
....+++.+++|+..|+++.|+.. +.++++++..|-|.|..+.++..-..|....+ .|+-+.|+|..
T Consensus 109 ~~kl~hr~lkdh~stvt~v~YN~~---------DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk--- 176 (673)
T KOG4378|consen 109 RAKLIHRFLKDHQSTVTYVDYNNT---------DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK--- 176 (673)
T ss_pred HHHHHhhhccCCcceeEEEEecCC---------cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc---
Confidence 334667889999999999999876 79999999999999999999988888876534 56688899973
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
...|.+++.||.|.+||+....++..+ ..|.++...|+|+|... .|++.+.| ..|++||+...+....
T Consensus 177 --r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D--------kki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 177 --RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD--------KKINIYDIRSQASTDR 246 (673)
T ss_pred --ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc--------ceEEEeecccccccce
Confidence 457888999999999999988887665 57999999999999654 66777887 9999999998777665
Q ss_pred EeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccccccccccC
Q 000450 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTI 777 (1496)
Q Consensus 715 l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~~ 777 (1496)
+.... +-..+.|. . +|.+.+.+.. .|++.+++++......+-.++
T Consensus 247 l~y~~-Plstvaf~------~------~G~~L~aG~s-----~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 247 LTYSH-PLSTVAFS------E------CGTYLCAGNS-----KGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred eeecC-Ccceeeec------C------CceEEEeecC-----CceEEEEecccCCCCceEeee
Confidence 54322 11122233 1 1333333333 788888888666555444443
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.4e-10 Score=124.64 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=140.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
+++.|..+|+|.+.....+..+.. .......+...++|.++|+.++|+. .+|++|+ ||.|+-|
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa-----~~~gk~~iv~eqahdgpiy~~~f~d-----------~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSA-----EPPGKLKIVPEQAHDGPIYYLAFHD-----------DFLLSGG-DGLVYGW 86 (325)
T ss_pred EEEEecCCCeEEEEEehhhhcccc-----CCCCCcceeeccccCCCeeeeeeeh-----------hheeecc-CceEEEe
Confidence 799999999999987765544311 1111234555689999999999983 6788887 5999988
Q ss_pred ECCCCce------E--EEEccc-----CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE
Q 000450 607 DLGSGNL------I--TVMHHH-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 607 Dl~tg~~------l--~~~~~H-----~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
.-+.... + .....| ...|+++.+.|. .+-++.++.|+.+.-||+++|+..+.++||.++|.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~------enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS------ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccC------CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 7543211 0 111122 346889999988 55666666999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCcccccccee
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLP 753 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~ 753 (1496)
++.-......+++|+.| |++||||.+|++.+.++.....+..+- ++. +. ..|-...+...+-
T Consensus 161 ~vv~R~~~~qilsG~ED--------GtvRvWd~kt~k~v~~ie~yk~~~~lR-------p~~-g~--wigala~~edWlv 222 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAED--------GTVRVWDTKTQKHVSMIEPYKNPNLLR-------PDW-GK--WIGALAVNEDWLV 222 (325)
T ss_pred eeeecccCcceeecCCC--------ccEEEEeccccceeEEeccccChhhcC-------ccc-Cc--eeEEEeccCceEE
Confidence 99997777788899998 999999999999998887655433221 000 00 0022223333344
Q ss_pred eccCCcEEeeccccc
Q 000450 754 IHEDGTFRQSQIQND 768 (1496)
Q Consensus 754 ~~~D~~ir~W~l~~~ 768 (1496)
+....++..|+|+..
T Consensus 223 CGgGp~lslwhLrss 237 (325)
T KOG0649|consen 223 CGGGPKLSLWHLRSS 237 (325)
T ss_pred ecCCCceeEEeccCC
Confidence 444567788988543
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=4e-11 Score=141.85 Aligned_cols=210 Identities=17% Similarity=0.186 Sum_probs=160.8
Q ss_pred eeecccccCccccccccCCCCCC----CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAG----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG 552 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~----~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~ 552 (1496)
.+.+...++++++|.+....... ..+.+|.+|.+.|-|+.+.+... .+.+|+.||+|+.|+.. .+.|
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~----~~ysgg~Dg~I~~w~~p--~n~d--- 378 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE----HCYSGGIDGTIRCWNLP--PNQD--- 378 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce----EEEeeccCceeeeeccC--CCCC---
Confidence 46677888999999994422222 45677899999999999877776 89999999999995433 2211
Q ss_pred CccccC-CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc---c--------
Q 000450 553 ASLKVN-SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---H-------- 620 (1496)
Q Consensus 553 ~~~d~~-s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~---H-------- 620 (1496)
..|.. ......++.||++.|+.+++|+. ...|++++.||||++|+.....+ .+|.. |
T Consensus 379 -p~ds~dp~vl~~~l~Ghtdavw~l~~s~~---------~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 379 -PDDSYDPSVLSGTLLGHTDAVWLLALSST---------KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred -cccccCcchhccceeccccceeeeeeccc---------ccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 01111 11334568899999999999986 67799999999999999865433 11100 0
Q ss_pred -----------------------------------------CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000450 621 -----------------------------------------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1496)
Q Consensus 621 -----------------------------------------~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~ 659 (1496)
...+..+...|. +....++..|++|+++|..++
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~------~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT------ADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC------CCeeEecccCCceeccccccc
Confidence 012334444444 788899999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000450 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1496)
Q Consensus 660 ~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a 720 (1496)
+.++....|...++++++.|+|.+|++++.| +.+++|.+....++.....|..
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d--------~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHD--------GSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCC--------ceeehhhccchheeeccccccc
Confidence 9999999999999999999999999999998 9999999988888777776654
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.27 E-value=3e-11 Score=139.61 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=129.2
Q ss_pred ccccCCccEEEEEeeccccccCC----EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 504 DFVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~----~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
...-+...|++++ |+|. .+++|...|.|-+|+++. +. .+ ..-+..+..|.++|.++.|+
T Consensus 181 v~kv~~~Rit~l~------fHPt~~~~lva~GdK~G~VG~Wn~~~-~~-------~d---~d~v~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 181 VAKVTDRRITSLA------FHPTENRKLVAVGDKGGQVGLWNFGT-QE-------KD---KDGVYLFTPHSGPVSGLKFS 243 (498)
T ss_pred eeEecccceEEEE------ecccCcceEEEEccCCCcEEEEecCC-CC-------Cc---cCceEEeccCCccccceEec
Confidence 3466788999998 7774 788999999999966541 11 11 13356678999999999999
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---------------------------------------------eE
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------------------------------------LI 614 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---------------------------------------------~l 614 (1496)
|. +...+++.|.||+|++=|++.+. ..
T Consensus 244 P~--------n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 244 PA--------NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred CC--------ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 97 26788899999999999987421 01
Q ss_pred EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE----EEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 615 TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV----ERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 615 ~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~----l~~~~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
..+..|...|..|+++|.. ..+++|+|.|++++|||++.... +.....|...|.++.|||++..|+|.|.|
T Consensus 316 ~~~~lh~kKI~sv~~NP~~-----p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVC-----PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred hhhhhhhcccceeecCCCC-----chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 1133477789999999984 56999999999999999986432 23334699999999999999999999999
Q ss_pred CCCCCCCCCEEEEEECC
Q 000450 691 HSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 691 ~sg~~D~dg~V~VWDl~ 707 (1496)
..|+|||..
T Consensus 391 --------~~IRv~dss 399 (498)
T KOG4328|consen 391 --------NEIRVFDSS 399 (498)
T ss_pred --------CceEEeecc
Confidence 999999984
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.26 E-value=4.4e-11 Score=133.41 Aligned_cols=141 Identities=25% Similarity=0.361 Sum_probs=117.9
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+|.|+.-|.|+|.+ ..++++...+.||.+.|+.+.++|+ ..++++|+|.|.+|++|
T Consensus 107 ~la~~G~~GvIrVid---------------~~~~~~~~~~~ghG~sINeik~~p~--------~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVID---------------VVSGQCSKNYRGHGGSINEIKFHPD--------RPQLVLSASKDHSVRLW 163 (385)
T ss_pred eEEeecceeEEEEEe---------------cchhhhccceeccCccchhhhcCCC--------CCcEEEEecCCceEEEE
Confidence 677777889999943 3456788889999999999999998 37899999999999999
Q ss_pred ECCCCceEEEEc---ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc------EE---------------
Q 000450 607 DLGSGNLITVMH---HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR------VE--------------- 662 (1496)
Q Consensus 607 Dl~tg~~l~~~~---~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~------~l--------------- 662 (1496)
++++..++..|- +|.+.|.++.|+++ |..|+|+|.|+++++|++...+ +.
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~------gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLD------GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCC------CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 999999998875 59999999999999 8999999999999999998321 00
Q ss_pred -E------EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 663 -R------MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 663 -~------~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
. +-.-|.++|-|+.|- |+++++-+-+ +.|..|..
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce--------naI~~w~p 278 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE--------NAIVCWKP 278 (385)
T ss_pred ccccccccccccccchHHHHHHH--hhheeecccC--------ceEEEEec
Confidence 1 112477888888886 5788887776 89999987
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=5.5e-10 Score=123.90 Aligned_cols=217 Identities=12% Similarity=0.131 Sum_probs=153.0
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEE-ecCCCC
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA-HRMVGT 584 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~-spd~~~ 584 (1496)
.+|.+-|.++.|-..+ .++++++.|++++||..+. +..+-.+....+.|.+.|..+.| +|.
T Consensus 10 s~h~DlihdVs~D~~G----RRmAtCSsDq~vkI~d~~~-----------~s~~W~~Ts~Wrah~~Si~rV~WAhPE--- 71 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG----RRMATCSSDQTVKIWDSTS-----------DSGTWSCTSSWRAHDGSIWRVVWAHPE--- 71 (361)
T ss_pred cCCcceeeeeeecccC----ceeeeccCCCcEEEEeccC-----------CCCceEEeeeEEecCCcEEEEEecCcc---
Confidence 4677778887633333 3999999999999954331 11222455667899999999999 665
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECC---------CCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~---------tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd 655 (1496)
+|+.+++++.|+++.||.-. ......++....+.|+.|.|.|.. .|-.+++++.||++|||+
T Consensus 72 -----fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h----lGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 72 -----FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH----LGLKLAAASADGILRIYE 142 (361)
T ss_pred -----ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh----cceEEEEeccCcEEEEEe
Confidence 69999999999999999852 122456777788899999999973 367899999999999998
Q ss_pred CCCC------cEEEEec-------CCCCCcEEEEEcCC---CCEEEEEEcCCCCCCCCCCEEEEEECCCC----eEEEEE
Q 000450 656 LETL------RVERMFP-------GHPNYPAKVVWDCP---RGYIACLCRDHSRTSDAVDVLFIWDVKTG----ARERVL 715 (1496)
Q Consensus 656 l~~~------~~l~~~~-------gH~~~V~~V~~spd---g~~L~tgs~D~sg~~D~dg~V~VWDl~tg----~~~~~l 715 (1496)
..+- .....+. .+..+..||.|+|. ..+|++|+.+ .... .+.++||....+ ..+.++
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e-~a~~--~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE-DAPH--LNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEccc-CCcc--ccceEEEEecCCcceeeeehhc
Confidence 6542 2222222 35567789999874 4688888865 1211 258999987543 246778
Q ss_pred eCCCCCceeeeeecccccccccceEEcCCccccccceee-ccCCcEEeecccc
Q 000450 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPI-HEDGTFRQSQIQN 767 (1496)
Q Consensus 716 ~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~-~~D~~ir~W~l~~ 767 (1496)
.+|+..+..+.|.|.+ ..+..++.+ +.|| +|+|+++.
T Consensus 220 ~d~~dpI~di~wAPn~--------------Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNI--------------GRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CCCCCcceeeeecccc--------------CCceeeEEEeecCc-EEEEEEee
Confidence 8999988888777421 122333333 3466 99999854
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.23 E-value=2e-10 Score=128.27 Aligned_cols=123 Identities=23% Similarity=0.259 Sum_probs=109.9
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
|......++|.-+. . ..+.+|+.||.-|.|+|.|+.++++...+.+|.+.|..+.+.|+. .++++|+|.|
T Consensus 88 ~~Esfytcsw~yd~--~---~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-----~qlvls~SkD 157 (385)
T KOG1034|consen 88 HDESFYTCSWSYDS--N---TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-----PQLVLSASKD 157 (385)
T ss_pred CCcceEEEEEEecC--C---CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC-----CcEEEEecCC
Confidence 66667778887762 1 125689999999999999999999999999999999999999985 6799999999
Q ss_pred CcEEEEECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 649 FSVALASLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~---~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
.+||+||+++..|+..| .||.+.|.+|.|+++|.++++++.| .++++|++.+.
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD--------hslk~W~l~~~ 213 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD--------HSLKLWRLNVK 213 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc--------ceEEEEecChh
Confidence 99999999999999887 4799999999999999999999999 99999999854
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.23 E-value=3e-10 Score=123.58 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=90.1
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
..|...|.++.|-+... +=+.|+.+..+..|.++ |+..+.+....+.--+-.|..+.+-||
T Consensus 202 ash~qpvlsldyas~~~----rGisgga~dkl~~~Sl~-----------~s~gslq~~~e~~lknpGv~gvrIRpD---- 262 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCD----RGISGGADDKLVMYSLN-----------HSTGSLQIRKEITLKNPGVSGVRIRPD---- 262 (323)
T ss_pred hhccCcceeeeechhhc----CCcCCCccccceeeeec-----------cccCcccccceEEecCCCccceEEccC----
Confidence 34566666666443332 55667777777776554 221111111122222345778888887
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
++.++|++.|+.||+|.-++.+++..++.|.+.|++++|+|+ ...++.+|.|..|.+|++
T Consensus 263 -----~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd------~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 -----GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD------CELMAAASKDARISLWKL 322 (323)
T ss_pred -----CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC------CchhhhccCCceEEeeec
Confidence 899999999999999999999999999999999999999998 789999999999999986
No 164
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=7.6e-09 Score=128.60 Aligned_cols=224 Identities=18% Similarity=0.215 Sum_probs=135.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccCC
Q 000450 22 TSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLD 101 (1496)
Q Consensus 22 va~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d 101 (1496)
-.||+|+++|+.. .+.+|.++...+ ...+..|++|+++++.+.+ + + ..++
T Consensus 22 avfSnD~k~l~~~-~~~~V~VyS~~T-----g~~i~~l~~~~a~l~s~~~---~---~------------------~~~~ 71 (792)
T KOG1963|consen 22 AVFSNDAKFLFLC-TGNFVKVYSTAT-----GECITSLEDHTAPLTSVIV---L---P------------------SSEN 71 (792)
T ss_pred cccccCCcEEEEe-eCCEEEEEecch-----HhhhhhcccccCccceeee---c---C------------------CCcc
Confidence 4699999998754 567899999986 3455589999999999973 0 0 1233
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcE--------------------EEEcC-----------------
Q 000450 102 NGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSV--------------------ICTLP----------------- 144 (1496)
Q Consensus 102 ~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~--------------------i~~~s----------------- 144 (1496)
..++.+.+.||+|++||..+|.+++.....-...+-.. ...++
T Consensus 72 ~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 72 ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 47899999999999999999998876432210000000 00000
Q ss_pred ------------------CCCe--EEEEcc----cccccC-------CcccccccccccccccccccCCCCCCCCccEEE
Q 000450 145 ------------------SNPR--YVCIGC----CFIDTN-------QLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLV 193 (1496)
Q Consensus 145 ------------------~~~~--ll~~G~----~~id~~-------~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~ 193 (1496)
+.+. +++--+ ++...+ ...+.|+|. +.-......+.........|+|.
T Consensus 152 ~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~-~t~~~~spn~~~~Aa~d~dGrI~ 230 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN-ITCVALSPNERYLAAGDSDGRIL 230 (792)
T ss_pred cchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhccc-ceeEEeccccceEEEeccCCcEE
Confidence 0111 111000 111110 011124442 22223344444455566678899
Q ss_pred EEECCc---eEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccccCCCcccCCCccce
Q 000450 194 IVDTYG---LTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDM 270 (1496)
Q Consensus 194 v~D~~t---~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~ 270 (1496)
+|.-.. .....+.+ +|+.+.|.++.|++++ .+++.|+..|.+.+|.+.+++ + +.
T Consensus 231 vw~d~~~~~~~~t~t~l--HWH~~~V~~L~fS~~G-----~~LlSGG~E~VLv~Wq~~T~~----k----------qf-- 287 (792)
T KOG1963|consen 231 VWRDFGSSDDSETCTLL--HWHHDEVNSLSFSSDG-----AYLLSGGREGVLVLWQLETGK----K----------QF-- 287 (792)
T ss_pred EEeccccccccccceEE--EecccccceeEEecCC-----ceEeecccceEEEEEeecCCC----c----------cc--
Confidence 986554 22333444 3666779999999554 568999999999999998872 1 11
Q ss_pred eeeccCcccCceEEEEecCCcEEEEEeCCeEE
Q 000450 271 AILQNGVVEGGHLVSVATCGNIIALVLKDHCI 302 (1496)
Q Consensus 271 v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~ 302 (1496)
+.-..+.+..+.+|||+...+++..|.-+
T Consensus 288 ---LPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 288 ---LPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ---ccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 11122445678889999988888877643
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.22 E-value=1.6e-10 Score=133.66 Aligned_cols=217 Identities=18% Similarity=0.172 Sum_probs=152.5
Q ss_pred cccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEeccc-----ccC--C-----
Q 000450 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLF-----ERH--N----- 549 (1496)
Q Consensus 482 ~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l-----~~~--d----- 549 (1496)
...|.|-+||.....+...-...+..|.+.|+++.+.+.+ ++.+.+.+.||+|+...+... ... +
T Consensus 207 dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n---~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs 283 (498)
T KOG4328|consen 207 DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN---TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFS 283 (498)
T ss_pred cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC---hhheeeeccCceeeeeeecchhhHHHhhcCccceeee
Confidence 3446677788743233233344567889999999833322 148899999999998765311 000 0
Q ss_pred ---------------CCC--CccccCCcce-EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC
Q 000450 550 ---------------SPG--ASLKVNSHVS-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG 611 (1496)
Q Consensus 550 ---------------~~~--~~~d~~s~~~-~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg 611 (1496)
.-+ ..||..++.. ...+.-|...|+.++++|.+ ..+|+|+|.|++++|||++.-
T Consensus 284 ~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~--------p~~laT~s~D~T~kIWD~R~l 355 (498)
T KOG4328|consen 284 SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC--------PWFLATASLDQTAKIWDLRQL 355 (498)
T ss_pred eccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC--------chheeecccCcceeeeehhhh
Confidence 001 2344443322 34456688899999999973 789999999999999999853
Q ss_pred c----eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC----CCcEEEEecCCCC------CcEEEEE
Q 000450 612 N----LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE----TLRVERMFPGHPN------YPAKVVW 677 (1496)
Q Consensus 612 ~----~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~----~~~~l~~~~gH~~------~V~~V~~ 677 (1496)
. ++.....|...|.+..|+|. +..+++.+.|..|+|||.. .-.++.++. |.. .+....|
T Consensus 356 ~~K~sp~lst~~HrrsV~sAyFSPs------~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W 428 (498)
T KOG4328|consen 356 RGKASPFLSTLPHRRSVNSAYFSPS------GGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAW 428 (498)
T ss_pred cCCCCcceecccccceeeeeEEcCC------CCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhhee
Confidence 2 23334579999999999999 5559999999999999983 333444443 322 2456789
Q ss_pred cCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCcee
Q 000450 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1496)
Q Consensus 678 spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~ 724 (1496)
.|+..++++|-.- ..|-|+|-..|+.+..+.+.....+.
T Consensus 429 ~P~~~li~vg~~~--------r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 429 DPDYNLIVVGRYP--------RPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred CCCccEEEEeccC--------cceeEEcCCCCEEeeeccCccccccc
Confidence 9999999999887 78999999999989888877764443
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.20 E-value=6.2e-10 Score=123.97 Aligned_cols=192 Identities=16% Similarity=0.164 Sum_probs=140.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEe--cCCccE---EEEEEecCCCCcccCcCCCEEEEEeCCC
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL--GHTGAV---LCLAAHRMVGTAKGWSFNEVLVSGSMDC 601 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~--gH~~~V---~~La~spd~~~~~~~~~~~~L~SGs~Dg 601 (1496)
.+++.+.+.-|.+ |+..+|+....+. .|...+ .||.|+|| |..|+.|- ..
T Consensus 125 l~a~ssr~~PIh~---------------wdaftG~lraSy~~ydh~de~taAhsL~Fs~D---------GeqlfaGy-kr 179 (406)
T KOG2919|consen 125 LFAVSSRDQPIHL---------------WDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD---------GEQLFAGY-KR 179 (406)
T ss_pred eeeeccccCceee---------------eeccccccccchhhhhhHHhhhhheeEEecCC---------CCeEeecc-cc
Confidence 5555566666766 4455666555553 355544 58999998 88888774 57
Q ss_pred cEEEEEC-CCCceEEE---E----cccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE
Q 000450 602 SIRIWDL-GSGNLITV---M----HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 602 tV~lWDl-~tg~~l~~---~----~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
+|+++|+ +.|.-... + .+..+-|.+++|+|.. ..+++.++--.++-|+.-..++++..+.||.+.|+
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~-----~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD-----SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC-----CcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 8999999 56642211 1 1336778999999984 56999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCC-CceeeeeecccccccccceEEcCCccccccc
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTAS-HSMFDHFCKGISMNSISGSVLNGNTSVSSLL 751 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~a-~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l 751 (1496)
.+.|.++|+.|.+|.+- +..|-.||++. +..+..+.+|.. ....+.|. .... |...+++..
T Consensus 255 hL~~~edGn~lfsGaRk-------~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FD----ld~~------~~~LasG~t 317 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARK-------DDKILCWDIRYSRDPVYALERHVGDTNQRILFD----LDPK------GEILASGDT 317 (406)
T ss_pred eEEeccCcCeecccccC-------CCeEEEEeehhccchhhhhhhhccCccceEEEe----cCCC------CceeeccCC
Confidence 99999999999999875 36899999976 566778888876 33344444 1122 333333333
Q ss_pred eeeccCCcEEeeccccccc
Q 000450 752 LPIHEDGTFRQSQIQNDER 770 (1496)
Q Consensus 752 ~~~~~D~~ir~W~l~~~e~ 770 (1496)
||.++.|+++.+..
T Consensus 318 -----dG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 318 -----DGSVRVWDLKDLGN 331 (406)
T ss_pred -----CccEEEEecCCCCC
Confidence 89999999987544
No 167
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.19 E-value=4.9e-11 Score=140.93 Aligned_cols=149 Identities=17% Similarity=0.277 Sum_probs=123.1
Q ss_pred EEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC
Q 000450 531 GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS 610 (1496)
Q Consensus 531 Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t 610 (1496)
.+..|.|.|+... .++++.|.. +..+. ....|+.+.|.|- +.+.|+.++.|+.|++|.+..
T Consensus 599 ~g~gG~iai~el~------~PGrLPDgv----~p~l~-Ngt~vtDl~WdPF--------D~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 599 AGSGGVIAIYELN------EPGRLPDGV----MPGLF-NGTLVTDLHWDPF--------DDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred cCCCceEEEEEcC------CCCCCCccc----ccccc-cCceeeecccCCC--------ChHHeeecccCceEEEEEecc
Confidence 4557888885544 255544431 11121 2346999999996 478999999999999999986
Q ss_pred Cc-------eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCE
Q 000450 611 GN-------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGY 683 (1496)
Q Consensus 611 g~-------~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~ 683 (1496)
+. +...++.|...|+++.|+|-. .+.+++++.|.+|+|||+++++....+.||.+.|..++|||||+.
T Consensus 660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----advLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 660 NGLPENEMTPEKILTIHGEKITSLRFHPLA-----ADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRR 734 (1012)
T ss_pred CCCCcccCCcceeeecccceEEEEEecchh-----hhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcc
Confidence 53 457788999999999999974 679999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 684 IACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 684 L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
+++.|.| |+|+||+.++++.
T Consensus 735 ~AtVcKD--------g~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 735 IATVCKD--------GTLRVYEPRSREQ 754 (1012)
T ss_pred eeeeecC--------ceEEEeCCCCCCC
Confidence 9999999 9999999988753
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.18 E-value=1.6e-10 Score=132.25 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=128.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
++++|+.|..|++|....-..+ .+ ..+-+....|..|+..|+++.|+|+ +++|+||+.++.|.+|
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~--~~----~~~V~y~s~Ls~H~~aVN~vRf~p~---------gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPG--GG----DMKVEYLSSLSRHTRAVNVVRFSPD---------GELLASGGDGGEVFLW 92 (434)
T ss_pred ceecccCccceeeeeeeecCCC--CC----ceeEEEeecccCCcceeEEEEEcCC---------cCeeeecCCCceEEEE
Confidence 7899999999999654421110 00 0122455668899999999999997 8999999999999999
Q ss_pred ECC--------C--------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 607 DLG--------S--------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 607 Dl~--------t--------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
-.. + .....++.+|...|..++|+|+ +..+++++.|.++++||+..|+.+..+..|..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d------~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD------SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC------CceeeeeeccceEEEEEeccceeEeecccccc
Confidence 866 2 2245678889999999999999 89999999999999999999999999999999
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 671 ~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
.|..++|.|..+|+++-+.| ...+++++...+
T Consensus 167 yvqgvawDpl~qyv~s~s~d--------r~~~~~~~~~~~ 198 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSD--------RHPEGFSAKLKQ 198 (434)
T ss_pred ccceeecchhhhhhhhhccC--------cccceeeeeeee
Confidence 99999999999999999888 667777765433
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=6.2e-09 Score=129.37 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=111.8
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
-++..++|+++||.++++|+|..||+|.+|.=-.. ..+.....++.=|..+|++|+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-~~~~~t~t~lHWH~~~V~~L~----------------------- 258 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-SDDSETCTLLHWHHDEVNSLS----------------------- 258 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccc-ccccccceEEEecccccceeE-----------------------
Confidence 34445799999999999999999999999985410 011222345566999999999
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccc
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEG 173 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~ 173 (1496)
|++||.||.||+..|.+.+|.+.+++ . ++-|+.|+|..-...++|+.+.|.-+.
T Consensus 259 ----fS~~G~~LlSGG~E~VLv~Wq~~T~~-k---qfLPRLgs~I~~i~vS~ds~~~sl~~~------------------ 312 (792)
T KOG1963|consen 259 ----FSSDGAYLLSGGREGVLVLWQLETGK-K---QFLPRLGSPILHIVVSPDSDLYSLVLE------------------ 312 (792)
T ss_pred ----EecCCceEeecccceEEEEEeecCCC-c---ccccccCCeeEEEEEcCCCCeEEEEec------------------
Confidence 78999999999999999999999997 2 233455777766677788876654432
Q ss_pred cccccccCCCCCCCCccEEEEEECCceEEEEEEecCcc--------ccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEE
Q 000450 174 DLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNL--------SIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLV 245 (1496)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~--------s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lW 245 (1496)
+..|.+....++++..++.+-.. .-+-...+.+.| +-+.++.=+..|.|++|
T Consensus 313 ---------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-----r~~~~vln~~~g~vQ~y 372 (792)
T KOG1963|consen 313 ---------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-----RTNSLVLNGHPGHVQFY 372 (792)
T ss_pred ---------------CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-----CCCceeecCCCceEEEE
Confidence 14555555555554444432000 001123344432 11234555788999999
Q ss_pred ECCCC
Q 000450 246 PISKE 250 (1496)
Q Consensus 246 dl~~~ 250 (1496)
|+.+.
T Consensus 373 dl~td 377 (792)
T KOG1963|consen 373 DLYTD 377 (792)
T ss_pred ecccc
Confidence 99876
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.14 E-value=1.9e-09 Score=120.25 Aligned_cols=208 Identities=15% Similarity=0.209 Sum_probs=147.5
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
++.++.+.-|++||....+.+ .......|-..+++.. ...|+|+ .|++| .+..|+| +++-. +++-.
T Consensus 126 ~a~ssr~~PIh~wdaftG~lr--aSy~~ydh~de~taAh---sL~Fs~DGeqlfaG-ykrcirv--Fdt~R----pGr~c 193 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLR--ASYRAYDHQDEYTAAH---SLQFSPDGEQLFAG-YKRCIRV--FDTSR----PGRDC 193 (406)
T ss_pred eeeccccCceeeeeccccccc--cchhhhhhHHhhhhhe---eEEecCCCCeEeec-ccceEEE--eeccC----CCCCC
Confidence 567778889999998876542 2222344555555421 1126666 66665 4778999 44211 22211
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
+..+-. .+--.|..+.+.|++|+|. +...++.|+.-.++-|+.-..+.++..+.+|.+.|+.+.|.++
T Consensus 194 ~vy~t~-~~~k~gq~giisc~a~sP~--------~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed--- 261 (406)
T KOG2919|consen 194 PVYTTV-TKGKFGQKGIISCFAFSPM--------DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED--- 261 (406)
T ss_pred cchhhh-hcccccccceeeeeeccCC--------CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC---
Confidence 111000 0001345778999999997 3678999999999999998889999999999999999999999
Q ss_pred CCCCCEEEEEeC-CCcEEEEECCCC-cEEEEecCCCC-CcEEEEE--cCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-C
Q 000450 636 HPWSDCFLSVGE-DFSVALASLETL-RVERMFPGHPN-YPAKVVW--DCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-G 709 (1496)
Q Consensus 636 ~~~g~~l~Sgs~-DgsV~lWdl~~~-~~l~~~~gH~~-~V~~V~~--spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g 709 (1496)
|+.|.+|+. |-.|..||++.. .++..+.+|.. .-..|-| .|++++|++|+.| |.|++||+++ |
T Consensus 262 ---Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td--------G~V~vwdlk~~g 330 (406)
T KOG2919|consen 262 ---GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD--------GSVRVWDLKDLG 330 (406)
T ss_pred ---cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC--------ccEEEEecCCCC
Confidence 888888875 778999999864 45677777766 3345555 6889999999888 9999999998 7
Q ss_pred eEEEEEeCCCC
Q 000450 710 ARERVLRGTAS 720 (1496)
Q Consensus 710 ~~~~~l~gh~a 720 (1496)
..+.++..|..
T Consensus 331 n~~sv~~~~sd 341 (406)
T KOG2919|consen 331 NEVSVTGNYSD 341 (406)
T ss_pred Ccccccccccc
Confidence 76666666654
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=7.4e-10 Score=124.54 Aligned_cols=192 Identities=15% Similarity=0.126 Sum_probs=137.4
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++++.++|+|++++|. ++.....+++|...++.+.|..+. ....+.||+.||+|++|
T Consensus 42 ~vav~lSngsv~lyd~~---------------tg~~l~~fk~~~~~~N~vrf~~~d-------s~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKG---------------TGQLLEEFKGPPATTNGVRFISCD-------SPHGVISCSSDGTVRLW 99 (376)
T ss_pred eEEEEecCCeEEEEecc---------------chhhhheecCCCCcccceEEecCC-------CCCeeEEeccCCeEEEE
Confidence 68999999999996554 466788899999999999996541 26789999999999999
Q ss_pred ECCCCceE--EEEcccC-CCEEEEEECCCCCCCCCCCEEEEEe----CCCcEEEEECCCCcE-EEE-ecCCCCCcEEEEE
Q 000450 607 DLGSGNLI--TVMHHHV-APVRQIILSPPQTEHPWSDCFLSVG----EDFSVALASLETLRV-ERM-FPGHPNYPAKVVW 677 (1496)
Q Consensus 607 Dl~tg~~l--~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~Sgs----~DgsV~lWdl~~~~~-l~~-~~gH~~~V~~V~~ 677 (1496)
|+++.... ..+..|. .+..+++.+-. ++++++|. .|-.|.+||++..+. ++. +..|...|++++|
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck------~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCK------KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCc------CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 99986644 4455555 46677777655 67888875 478999999998766 443 4679999999999
Q ss_pred cCCC-CEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccc--cceee
Q 000450 678 DCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSS--LLLPI 754 (1496)
Q Consensus 678 spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~--~l~~~ 754 (1496)
+|.. +.|++|+.| |-|.|+|++.-..+- -+.+.++..+ +|..-.+.... .++.+
T Consensus 174 HP~~pnlLlSGSvD--------GLvnlfD~~~d~EeD---------aL~~viN~~s------SI~~igw~~~~ykrI~cl 230 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVD--------GLVNLFDTKKDNEED---------ALLHVINHGS------SIHLIGWLSKKYKRIMCL 230 (376)
T ss_pred cCCCCCeEEeeccc--------ceEEeeecCCCcchh---------hHHHhhcccc------eeeeeeeecCCcceEEEE
Confidence 9955 588888888 999999997542211 1111121100 01111122222 46777
Q ss_pred ccCCcEEeecccccc
Q 000450 755 HEDGTFRQSQIQNDE 769 (1496)
Q Consensus 755 ~~D~~ir~W~l~~~e 769 (1496)
..++++.+|+++...
T Consensus 231 TH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 231 THMETFAIYELEDGS 245 (376)
T ss_pred EccCceeEEEccCCC
Confidence 888999999986654
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.12 E-value=8e-09 Score=122.51 Aligned_cols=196 Identities=23% Similarity=0.303 Sum_probs=153.3
Q ss_pred cCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcce
Q 000450 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 484 ~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~-dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
++.+.+|+... .......+..|...|..+.+.+... .++.+.. |+.+.+ |+ ...+..
T Consensus 133 d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~--~~-------------~~~~~~ 190 (466)
T COG2319 133 DGTVKLWDLST---PGKLIRTLEGHSESVTSLAFSPDGK----LLASGSSLDGTIKL--WD-------------LRTGKP 190 (466)
T ss_pred CccEEEEEecC---CCeEEEEEecCcccEEEEEECCCCC----EEEecCCCCCceEE--EE-------------cCCCce
Confidence 55778888765 1234455688889999888555443 5777765 999998 43 333567
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCC-EEEEEeCCCcEEEEECCCCceEE-EEcccCCCEEEEEECCCCCCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~-~L~SGs~DgtV~lWDl~tg~~l~-~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
...+.+|...|.+++|+|+ +. .+++++.|++|++||...+..+. .+..|...+ -..|+|+ +.
T Consensus 191 ~~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------~~ 254 (466)
T COG2319 191 LSTLAGHTDPVSSLAFSPD---------GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------GS 254 (466)
T ss_pred EEeeccCCCceEEEEEcCC---------cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------CC
Confidence 7888889999999999986 55 66666999999999999888888 788998875 4489998 67
Q ss_pred EEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe--C
Q 000450 641 CFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR--G 717 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~~~-l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~--g 717 (1496)
.+++++.|+.+++|+++.... +..+.+|...+.++.|.|++..+++++.| +.+++||..++....... +
T Consensus 255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--------~~~~~~~~~~~~~~~~~~~~~ 326 (466)
T COG2319 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD--------GTVRLWDLETGKLLSSLTLKG 326 (466)
T ss_pred EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC--------CcEEEEEcCCCceEEEeeecc
Confidence 888999999999999987664 55557888999999999999999887777 789999999988777766 7
Q ss_pred CCCCceee
Q 000450 718 TASHSMFD 725 (1496)
Q Consensus 718 h~a~vi~~ 725 (1496)
|...+...
T Consensus 327 ~~~~~~~~ 334 (466)
T COG2319 327 HEGPVSSL 334 (466)
T ss_pred cCCceEEE
Confidence 77633333
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.12 E-value=2.7e-09 Score=117.45 Aligned_cols=187 Identities=17% Similarity=0.185 Sum_probs=131.4
Q ss_pred ecccccCccccccccCCCCCCCcccc--cccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDD--FVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~--~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~ 553 (1496)
.++..+..+.+|+............. -.+|....++- .|+|. .-+....|+++.. ||
T Consensus 138 lasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg------~WspHHdgnqv~tt~d~tl~~--~D---------- 199 (370)
T KOG1007|consen 138 LASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSG------AWSPHHDGNQVATTSDSTLQF--WD---------- 199 (370)
T ss_pred eEEeccCceEEEEcccCcchheeecccccccccceeccc------ccCCCCccceEEEeCCCcEEE--EE----------
Confidence 34455788899998776542111100 11223333332 36663 3344456888887 33
Q ss_pred ccccCCcceEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC-CceEEEEcccCCCEEEEEECC
Q 000450 554 SLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 554 ~~d~~s~~~~~~l-~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t-g~~l~~~~~H~~~V~~l~~sP 631 (1496)
..+......+ ..|...|..+.|+|+. ..+|+||+.||.|++||.+. ..++..+.+|...|++|.|+|
T Consensus 200 ---~RT~~~~~sI~dAHgq~vrdlDfNpnk--------q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 200 ---LRTMKKNNSIEDAHGQRVRDLDFNPNK--------QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred ---ccchhhhcchhhhhcceeeeccCCCCc--------eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 2232333333 4688899999999972 67999999999999999985 457899999999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCC-----------------------------cEEEEecCCCCCcEEEEEcCCCC
Q 000450 632 PQTEHPWSDCFLSVGEDFSVALASLETL-----------------------------RVERMFPGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~DgsV~lWdl~~~-----------------------------~~l~~~~gH~~~V~~V~~spdg~ 682 (1496)
.. .++++|||.|..|.+|....- ..+.++..|...|++++|+.-+.
T Consensus 269 ~h-----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 269 EH-----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred cc-----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 85 789999999999999965310 13446778999999999998777
Q ss_pred EE-EEEEcCCCCCCCCCCEEEEEECC
Q 000450 683 YI-ACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 683 ~L-~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
++ ++.+.| |.+.|=.+.
T Consensus 344 WiFASLSYD--------GRviIs~V~ 361 (370)
T KOG1007|consen 344 WIFASLSYD--------GRVIISSVP 361 (370)
T ss_pred eeEEEeccC--------ceEEeecCC
Confidence 65 555666 888886654
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.11 E-value=1.2e-08 Score=120.91 Aligned_cols=202 Identities=20% Similarity=0.292 Sum_probs=146.7
Q ss_pred ccCccccccccCCCCCCCcccccccCC-ccEEEEEeeccccccCCEEEE-EEcCCcEEEEEecccccCCCCCCccccCC-
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKE-KIVSSSMVISESFYAPYAIVY-GFFSGEIEVIQFDLFERHNSPGASLKVNS- 559 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~-~~Vts~~~~s~~~f~P~~lv~-Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s- 559 (1496)
.++.+.+|+..... .....+..+. ..+....+. ..... ..++. +..|+.+.+|... .
T Consensus 85 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~~~~---------------~~ 144 (466)
T COG2319 85 SDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALS-SPDGN-SILLASSSLDGTVKLWDLS---------------TP 144 (466)
T ss_pred CCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEE-CCCcc-eEEeccCCCCccEEEEEec---------------CC
Confidence 45677778876653 1222233322 244444432 11111 12333 3447888874333 2
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC-CCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~-DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
......+.+|...|.++.|+|+ +..+++++. |+.+++|++..+..+..+.+|...|.++.|+|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 209 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPD---------GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD------ 209 (466)
T ss_pred CeEEEEEecCcccEEEEEECCC---------CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC------
Confidence 4567788999999999999997 668888885 999999999999999999999999999999988
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEE-EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE-EEEE
Q 000450 639 SD-CFLSVGEDFSVALASLETLRVER-MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR-ERVL 715 (1496)
Q Consensus 639 g~-~l~Sgs~DgsV~lWdl~~~~~l~-~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~-~~~l 715 (1496)
+. .+++++.|++|++||...+..+. .+.+|...+ ...|+|++.++++++.| +.+++||++.... ...+
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d--------~~~~~~~~~~~~~~~~~~ 280 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD--------GTIRLWDLRSSSSLLRTL 280 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC--------CcEEEeeecCCCcEEEEE
Confidence 65 66666999999999999888888 688998876 44899999888888888 9999999987664 5555
Q ss_pred eCCCCCceeeeee
Q 000450 716 RGTASHSMFDHFC 728 (1496)
Q Consensus 716 ~gh~a~vi~~~~~ 728 (1496)
.+|...+....+.
T Consensus 281 ~~~~~~v~~~~~~ 293 (466)
T COG2319 281 SGHSSSVLSVAFS 293 (466)
T ss_pred ecCCccEEEEEEC
Confidence 6776555544343
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.10 E-value=3.5e-11 Score=146.40 Aligned_cols=191 Identities=19% Similarity=0.247 Sum_probs=144.4
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
.+..+.+|...|.|..+-..+. ++++|+.|.-++||. .++..+.....||.+.++.++.+.
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~----~Iitgsdd~lvKiwS---------------~et~~~lAs~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR----YIITGSDDRLVKIWS---------------METARCLASCRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc----eEeecCccceeeeee---------------ccchhhhccCCCCccccchhccch
Confidence 3445789999999988666665 899999999999933 446678888999999999999987
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC--
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-- 658 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-- 658 (1496)
. +.+++++|.|+.|++|-+..+.++..+.+|++.|++++|+|- .+.+.||++++||.+-
T Consensus 243 ~---------n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~----------~sss~dgt~~~wd~r~~~ 303 (1113)
T KOG0644|consen 243 N---------NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----------ASSSDDGTCRIWDARLEP 303 (1113)
T ss_pred h---------hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc----------ccCCCCCceEeccccccc
Confidence 5 688999999999999999999999999999999999999997 2778899999999871
Q ss_pred ------------CcEEEE--ec--------CC------CCCcEEEEEcCCCCEEEEEEcCCC---CCCCCCCEEEEEECC
Q 000450 659 ------------LRVERM--FP--------GH------PNYPAKVVWDCPRGYIACLCRDHS---RTSDAVDVLFIWDVK 707 (1496)
Q Consensus 659 ------------~~~l~~--~~--------gH------~~~V~~V~~spdg~~L~tgs~D~s---g~~D~dg~V~VWDl~ 707 (1496)
+..+.. +. +. .....+++|...+-.+++...|++ ...-.+..+.+|++.
T Consensus 304 ~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 304 RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 000000 00 00 012234455555545555554422 111122678999999
Q ss_pred CCeEEEEEeCCCCCceeeeeec
Q 000450 708 TGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 708 tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
+|.+++.+.||...+....+.+
T Consensus 384 ~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cchhhhhhcccccceeeeeecC
Confidence 9999999999999888877664
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.08 E-value=8.6e-10 Score=126.37 Aligned_cols=136 Identities=19% Similarity=0.306 Sum_probs=117.1
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---------eEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------LITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---------~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
..+|..+.|+++ +...++||+.|..|++|-+..+. .+..+..|...|+.+.|+|+ |.
T Consensus 13 ~~pv~s~dfq~n--------~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~------ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKN--------SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD------GE 78 (434)
T ss_pred CCceEEEEeccC--------cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC------cC
Confidence 357899999886 24599999999999999987532 34678889999999999999 99
Q ss_pred EEEEEeCCCcEEEEECC--------C--------CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 641 CFLSVGEDFSVALASLE--------T--------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~--------~--------~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
.++||+.++.|.+|-.. + ....+.+.+|...|..++|+||+.++++++.| .++++|
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d--------ns~~l~ 150 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD--------NSVRLW 150 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc--------ceEEEE
Confidence 99999999999999765 2 33556778999999999999999999999999 999999
Q ss_pred ECCCCeEEEEEeCCCCCceeeee
Q 000450 705 DVKTGARERVLRGTASHSMFDHF 727 (1496)
Q Consensus 705 Dl~tg~~~~~l~gh~a~vi~~~~ 727 (1496)
|+..|+++..+.+|..-+....+
T Consensus 151 Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 151 DVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred EeccceeEeeccccccccceeec
Confidence 99999999999999976666533
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=1.7e-09 Score=121.67 Aligned_cols=200 Identities=17% Similarity=0.273 Sum_probs=150.7
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.++++.+++.++++|... ++....|.+++..++-+.++++. +|..+.+++.||+|++|....
T Consensus 42 ~vav~lSngsv~lyd~~t----g~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs------------ 103 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGT----GQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRS------------ 103 (376)
T ss_pred eEEEEecCCeEEEEeccc----hhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeec------------
Confidence 366777888999999776 56778899999999999998876 578999999999999944331
Q ss_pred cCCcceEEEEecCC-ccEEEEEEecCCCCcccCcCCCEEEEEe----CCCcEEEEECCCCce-EEE-EcccCCCEEEEEE
Q 000450 557 VNSHVSRQYFLGHT-GAVLCLAAHRMVGTAKGWSFNEVLVSGS----MDCSIRIWDLGSGNL-ITV-MHHHVAPVRQIIL 629 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~-~~V~~La~spd~~~~~~~~~~~~L~SGs----~DgtV~lWDl~tg~~-l~~-~~~H~~~V~~l~~ 629 (1496)
.....+..+.+|. .+-.|++.... ++.++.|. .|-.|.+||++..+. +.. +..|...|++|.|
T Consensus 104 -~~e~a~~~~~~~~~~~f~~ld~nck---------~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 104 -QAESARISWTQQSGTPFICLDLNCK---------KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred -chhhhheeccCCCCCcceEeeccCc---------CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 1123344455555 35667766543 67777775 566899999998765 443 4579999999999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCc---EEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLR---VERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 630 sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~---~l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+|.. .+.++|||.||-|.|+|++.-. .+...-.|...|.++.|..++ +.|.+.+.. ++.++|+
T Consensus 174 HP~~-----pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~--------Etf~~~e 240 (376)
T KOG1188|consen 174 HPSD-----PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM--------ETFAIYE 240 (376)
T ss_pred cCCC-----CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc--------CceeEEE
Confidence 9985 7899999999999999997532 222223477789999998776 457888877 8999999
Q ss_pred CCCCeEEEEEeC
Q 000450 706 VKTGARERVLRG 717 (1496)
Q Consensus 706 l~tg~~~~~l~g 717 (1496)
++.+..+..+..
T Consensus 241 le~~~~~~~~~~ 252 (376)
T KOG1188|consen 241 LEDGSEETWLEN 252 (376)
T ss_pred ccCCChhhcccC
Confidence 999886655543
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.04 E-value=2e-09 Score=118.33 Aligned_cols=164 Identities=14% Similarity=0.132 Sum_probs=118.4
Q ss_pred CCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 508 KEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 508 h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
+-+.|.|+. |.|+ .+++-. |..|.+|..+ .+. ...-.+. ...-.+|+...++=+|+|.|
T Consensus 122 avg~i~cve------w~Pns~klasm~-dn~i~l~~l~--ess---~~vaev~----ss~s~e~~~~ftsg~WspHH--- 182 (370)
T KOG1007|consen 122 AVGKINCVE------WEPNSDKLASMD-DNNIVLWSLD--ESS---KIVAEVL----SSESAEMRHSFTSGAWSPHH--- 182 (370)
T ss_pred HhCceeeEE------EcCCCCeeEEec-cCceEEEEcc--cCc---chheeec----ccccccccceecccccCCCC---
Confidence 445888988 5555 566544 7788884443 110 0000010 00112366677888999964
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEE-cccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEE
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVER 663 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~-~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~ 663 (1496)
+++.+++. .|+++..||+++.++...+ ..|...|+.+.|+|+. ..+|++++.|+.|++||.+. ..++.
T Consensus 183 ----dgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-----q~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 183 ----DGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-----QHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ----ccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-----eEEEEEcCCCccEEEEeccCCCcccc
Confidence 36666665 5899999999988766554 4688899999999984 67899999999999999975 45789
Q ss_pred EecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 664 MFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 664 ~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
.+++|...|++|.|+|.-. ++++|+.| ..|.+|.+.+
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SD--------s~V~Lsca~s 290 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSD--------SAVNLSCASS 290 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCC--------ceeEEEeccc
Confidence 9999999999999999654 56666666 8999998754
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.00 E-value=4.4e-09 Score=115.96 Aligned_cols=213 Identities=19% Similarity=0.190 Sum_probs=152.6
Q ss_pred ccCCccEEEEEeecccc-ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-----ecCCccEEEEEEe
Q 000450 506 VHKEKIVSSSMVISESF-YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-----LGHTGAVLCLAAH 579 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~-f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-----~gH~~~V~~La~s 579 (1496)
..|.-.++.++++++.. ..|+.|++ .+..+++|+...-.. .. .+...+ ..|..+++++.|+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLAT--s~D~LRlWri~~ee~---~~--------~~~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLAT--SSDFLRLWRIGDEES---RV--------ELQSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhc--ccCeEEEEeccCcCC---ce--------ehhhhhccCcccccCCcccccccc
Confidence 35777888999877663 45666665 355788855431000 00 111111 2456789999998
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
.- +.+++.+.|-|-|..|||+++|. ....+-.|..+|..++|...+ -+.|+|+|.||+||++|+
T Consensus 160 e~--------dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-----~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 160 EV--------DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-----RDVFASVGADGSVRMFDL 226 (364)
T ss_pred cC--------CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-----cceEEEecCCCcEEEEEe
Confidence 75 37899999999999999999873 356788999999999999863 569999999999999999
Q ss_pred CCCcEE---EEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCCceeeeeeccc
Q 000450 657 ETLRVE---RMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGI 731 (1496)
Q Consensus 657 ~~~~~l---~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~a~vi~~~~~~~~ 731 (1496)
+..+.- ..-+....+...++|++.+ +||++-..| + ..|.|-|++. +..+..+++|++.+-.+.+.+.
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d------S-~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh- 298 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD------S-NKVVILDIRVPCTPVARLRNHQASVNGIAWAPH- 298 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC------C-ceEEEEEecCCCcceehhhcCcccccceEecCC-
Confidence 875432 2222224578899998754 588877766 1 6799999987 5678999999998877766532
Q ss_pred ccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 732 ~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
.+.++.+...|....+|+++.
T Consensus 299 ---------------S~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 299 ---------------SSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ---------------CCceeeecCCcceEEEEeccc
Confidence 223444555688899999843
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=3.9e-08 Score=123.12 Aligned_cols=191 Identities=16% Similarity=0.121 Sum_probs=128.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+..+.....|++||........ ....+-...||++. ....+.+.++.|+.||.+++ ||.... ..
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~~~---diP~~s~t~vTaLS---~~~~~gn~i~AGfaDGsvRv--yD~R~a--------~~ 1243 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVA---DIPYGSSTLVTALS---ADLVHGNIIAAGFADGSVRV--YDRRMA--------PP 1243 (1387)
T ss_pred EEecCCeeEEEEEecccceeEe---ecccCCCccceeec---ccccCCceEEEeecCCceEE--eecccC--------Cc
Confidence 4444455678888876543211 11233334455533 22123358999999999999 442111 11
Q ss_pred CCcceEEEEecCCcc--EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceE--EEEcccC--C-CEEEEEEC
Q 000450 558 NSHVSRQYFLGHTGA--VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI--TVMHHHV--A-PVRQIILS 630 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~--V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l--~~~~~H~--~-~V~~l~~s 630 (1496)
...+...+.|+.. |..+.+.+. | -..|+||+.||.|++||++..... .+...|. | ..+++.++
T Consensus 1244 --ds~v~~~R~h~~~~~Iv~~slq~~-----G---~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1244 --DSLVCVYREHNDVEPIVHLSLQRQ-----G---LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred --cccceeecccCCcccceeEEeecC-----C---CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec
Confidence 1345667888887 999998774 1 337999999999999999874322 2222332 4 48999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC-------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEE
Q 000450 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 703 (1496)
Q Consensus 631 Pd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH-------~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~V 703 (1496)
++ ..+++||+. +.|+||++.. +.+..+..+ ...+.+++|+|-.-.+++|..| .+|.|
T Consensus 1314 ~h------apiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D--------s~V~i 1377 (1387)
T KOG1517|consen 1314 EH------APIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD--------STVSI 1377 (1387)
T ss_pred cC------CCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCC--------ceEEE
Confidence 88 789999998 9999999863 333333222 2357999999999999999877 99999
Q ss_pred EECCCCe
Q 000450 704 WDVKTGA 710 (1496)
Q Consensus 704 WDl~tg~ 710 (1496)
|..+.++
T Consensus 1378 Ys~~k~~ 1384 (1387)
T KOG1517|consen 1378 YSCEKPR 1384 (1387)
T ss_pred eecCCcC
Confidence 9876543
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.99 E-value=1.2e-09 Score=118.87 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=116.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++.|+++|.+.+|.... ++.... -....+.+.....|.++|.++.|.+. -..=++|+.+..+..|
T Consensus 167 lllaGyEsghvv~wd~S~---~~~~~~--~~~~~kv~~~~ash~qpvlsldyas~---------~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLST---GDKIIQ--LPQSSKVESPNASHKQPVLSLDYASS---------CDRGISGGADDKLVMY 232 (323)
T ss_pred EEEEeccCCeEEEEEccC---Cceeec--cccccccccchhhccCcceeeeechh---------hcCCcCCCccccceee
Confidence 688999999999954331 100000 01111233345679999999999764 3344788888899999
Q ss_pred ECCC--CceE--EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000450 607 DLGS--GNLI--TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 607 Dl~t--g~~l--~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~ 682 (1496)
++.. |.+. ...+...-.|..+.+.|| ++++++++.|+.||+|+.++++++..+.-|.+.|++++|+|+..
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD------~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPD------GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccC------CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 9874 3322 222333446888888888 99999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.++.++.| ++|-+|++
T Consensus 307 lmAaaskD--------~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKD--------ARISLWKL 322 (323)
T ss_pred hhhhccCC--------ceEEeeec
Confidence 99999999 99999986
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.4e-09 Score=122.53 Aligned_cols=194 Identities=16% Similarity=0.176 Sum_probs=125.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccccccccc
Q 000450 20 TATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSS 99 (1496)
Q Consensus 20 tava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s 99 (1496)
-+++|+.||..|+||+.||.+++|+... ..+......|.+.|.+|. |+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-----~~t~l~e~~~~~eV~DL~---------------------------FS 195 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-----MLTILEEIAHHAEVKDLD---------------------------FS 195 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-----chhhhhhHhhcCccccce---------------------------eC
Confidence 6899999999999999999999999752 344455568999999998 78
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCC---eEEEEcccccccCCccccccccccccccc
Q 000450 100 LDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP---RYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1496)
Q Consensus 100 ~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~---~ll~~G~~~id~~~l~~~~~~~~v~~~~~ 176 (1496)
+|+++|+|-+.| ..+||++++|.++++..-. .-..--.-|+|..++ .|.+.... .+
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~-~k~~~~~~cRF~~d~~~~~l~laa~~-~~------------------ 254 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPF-SKDEMFSSCRFSVDNAQETLRLAASQ-FP------------------ 254 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCc-ccchhhhhceecccCCCceEEEEEec-CC------------------
Confidence 889999999999 9999999999888764311 001112334565444 22222111 00
Q ss_pred ccccCCCCCCCCccEEEEEECCc-eEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcccc
Q 000450 177 SEDKEVPMKNPPKCTLVIVDTYG-LTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1496)
Q Consensus 177 ~~d~~~~~~~~~~~~I~v~D~~t-~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~ 255 (1496)
...-..+.+-+|+-.. ++..+.++ +... |++|+|+ +||+ .+.+|+.||.|-+++..+-..
T Consensus 255 -------~~~v~~~~~~~w~~~~~l~~~~~~~--~~~s--iSsl~VS---~dGk--f~AlGT~dGsVai~~~~~lq~--- 315 (398)
T KOG0771|consen 255 -------GGGVRLCDISLWSGSNFLRLRKKIK--RFKS--ISSLAVS---DDGK--FLALGTMDGSVAIYDAKSLQR--- 315 (398)
T ss_pred -------CCceeEEEeeeeccccccchhhhhh--ccCc--ceeEEEc---CCCc--EEEEeccCCcEEEEEeceeee---
Confidence 0000114445554421 11111111 1222 8999998 4555 477789999999999876420
Q ss_pred ccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCC
Q 000450 256 EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKD 299 (1496)
Q Consensus 256 ~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~ 299 (1496)
+. ...+.|..-+..|.|+||.+.++.++.+
T Consensus 316 ------------~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 316 ------------LQ--YVKEAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred ------------eE--eehhhheeeeeeEEEcCCcCcccccccC
Confidence 10 1123366678899999998777775554
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.96 E-value=2.9e-08 Score=123.60 Aligned_cols=258 Identities=14% Similarity=0.142 Sum_probs=170.0
Q ss_pred eeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCC----ceeeeccccccccCCCCccc
Q 000450 400 KFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGF----SFVDWVNNSTFLDENEGSCT 475 (1496)
Q Consensus 400 ~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~----~~~~w~~~~~~~~~~dG~~i 475 (1496)
...+.|++..+.++... |+++ .+.+|++....+.....-....... ....|..... +.
T Consensus 245 v~~~~f~p~~p~ll~gG--~y~G--------qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~------~~-- 306 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGG--CYNG--------QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH------NT-- 306 (555)
T ss_pred eeEEEeccCCcceEEee--ccCc--------eEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC------CC--
Confidence 45778888888877654 2333 3778986554431111000111111 1256755431 11
Q ss_pred ceeecccccCccccccccCCCCCC-C-cccccc------cCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEeccccc
Q 000450 476 GKSDLTFCQDTVPRSEHVDSRQAG-D-GRDDFV------HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFER 547 (1496)
Q Consensus 476 ~~l~~s~~~~~i~lWd~~~~~~~~-~-~~~~~~------~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~ 547 (1496)
.+...+.+|.+..|++..-..+. . +..... .....++++.+.+ ..|+.++.|++.|.|....+.-...
T Consensus 307 -~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~---~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 307 -EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP---TDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred -ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc---CCCceEEEEcCCcEEEEEeccCCcc
Confidence 35666679999999876533321 1 111111 1123456665443 4467999999999998844331111
Q ss_pred CCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC-CCceEEEEcccCCCEEE
Q 000450 548 HNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQ 626 (1496)
Q Consensus 548 ~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~-tg~~l~~~~~H~~~V~~ 626 (1496)
. .....+.+..+..|.++|+++.++|- ....+.|++ |-+|++|.-. ...++..+..+...|++
T Consensus 383 ~-------~~~~~~~~~~~~~h~g~v~~v~~nPF--------~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 383 A-------PEVSYKGHSTFITHIGPVYAVSRNPF--------YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred c-------ccccccccccccccCcceEeeecCCC--------ccceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 0 00112345566789999999999996 245666666 9999999988 67788888889999999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECCC--CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLET--LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 627 l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~--~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
++|+|-. ..+|+++..||.+-+||+.. .+++.+..-+......+.|++.|+.|++|... |++++|
T Consensus 447 vaWSptr-----pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~--------G~~~~~ 513 (555)
T KOG1587|consen 447 VAWSPTR-----PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN--------GTTHIL 513 (555)
T ss_pred eEEcCcC-----ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC--------CcEEEE
Confidence 9999984 56999999999999999964 44555555555667889999999999999888 999999
Q ss_pred ECCC
Q 000450 705 DVKT 708 (1496)
Q Consensus 705 Dl~t 708 (1496)
++..
T Consensus 514 ~l~~ 517 (555)
T KOG1587|consen 514 KLSE 517 (555)
T ss_pred EcCc
Confidence 9854
No 184
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.95 E-value=6.3e-09 Score=122.55 Aligned_cols=152 Identities=20% Similarity=0.216 Sum_probs=116.3
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC----C---cc------ccCCcceEEEEecCCccEEEE
Q 000450 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG----A---SL------KVNSHVSRQYFLGHTGAVLCL 576 (1496)
Q Consensus 510 ~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~----~---~~------d~~s~~~~~~l~gH~~~V~~L 576 (1496)
..|+|+.+.+-. +..++.+..+|.+.+++-....+...+. + .. ...+..++..+.--.+.|+.+
T Consensus 220 tsvT~ikWvpg~---~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f 296 (636)
T KOG2394|consen 220 SSVTCIKWVPGS---DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF 296 (636)
T ss_pred cceEEEEEEeCC---CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence 678888855532 1367788889999885332111110000 0 00 011112333333335578899
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
+|+|| +++||+-|.||.+||+|..+.+++..++..-+...||.|+|| |++|++|++|--|.||++
T Consensus 297 ~FS~D---------G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD------GKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 297 AFSPD---------GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD------GKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred eEcCC---------CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC------ccEEEecCCcceEEEEEe
Confidence 99997 999999999999999999999999999988899999999999 999999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcC
Q 000450 657 ETLRVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 657 ~~~~~l~~~~gH~~~V~~V~~sp 679 (1496)
..++++..-.||.++|..|+|.|
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEeccccccceeeEeecc
Confidence 99999999999999999999984
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1.6e-09 Score=127.22 Aligned_cols=126 Identities=22% Similarity=0.301 Sum_probs=110.0
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEE-cccCCCEEEEEECCCCCCCCCCCE
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~-~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
.+.|.||+|.|+||.|+.+ |.+|+|||.|-.+.|||....++++.+ ++|++-|.++.|-|... ..+
T Consensus 43 E~eL~GH~GCVN~LeWn~d---------G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn----nri 109 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNAD---------GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN----NRI 109 (758)
T ss_pred hhhhccccceecceeecCC---------CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC----CeE
Confidence 4568899999999999987 999999999999999999988888877 57999999999999731 568
Q ss_pred EEEEeCCCcEEEEECCC----------CcEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 642 FLSVGEDFSVALASLET----------LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 642 l~Sgs~DgsV~lWdl~~----------~~~l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
++||+.|..|+|+|+.. ....+.+..|...|..++--|++ ..+.+++.| |+|+-+|++..
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED--------GtirQyDiREp 180 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED--------GTIRQYDIREP 180 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC--------cceeeecccCC
Confidence 99999999999999984 23456677899999999999998 677788888 99999999863
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.95 E-value=1e-08 Score=113.19 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=123.5
Q ss_pred cCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000450 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1496)
Q Consensus 507 ~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1496)
.+...+|+..+.. ..|+++.+.+-|-+..||.... + ..+.....|-.|...|..++|...
T Consensus 148 ~~~aPlTSFDWne---~dp~~igtSSiDTTCTiWdie~--~----------~~~~vkTQLIAHDKEV~DIaf~~~----- 207 (364)
T KOG0290|consen 148 EFCAPLTSFDWNE---VDPNLIGTSSIDTTCTIWDIET--G----------VSGTVKTQLIAHDKEVYDIAFLKG----- 207 (364)
T ss_pred ccCCccccccccc---CCcceeEeecccCeEEEEEEee--c----------cccceeeEEEecCcceeEEEeccC-----
Confidence 3445667644222 4577999999999999943321 0 123345668899999999999875
Q ss_pred cCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc---cCCCEEEEEECCCCCCCCCCCEEEEEeCC-CcEEEEECCC-CcE
Q 000450 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIILSPPQTEHPWSDCFLSVGED-FSVALASLET-LRV 661 (1496)
Q Consensus 587 ~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~---H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D-gsV~lWdl~~-~~~ 661 (1496)
..+.++|.|.||.||+||++..+--..+.. -..+...++|++.. -+++++...| ..|.+.|++. ..+
T Consensus 208 ---s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-----pnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 208 ---SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-----PNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred ---ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-----chHHhhhhcCCceEEEEEecCCCcc
Confidence 267999999999999999987654333322 14578888888863 6688887665 5789999986 456
Q ss_pred EEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 662 ERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+..+.+|.+.|+.|+|.|... .|.+++.| ..+-|||+.+
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD--------~qaliWDl~q 319 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDD--------CQALIWDLQQ 319 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCc--------ceEEEEeccc
Confidence 888999999999999999765 55666555 8999999965
No 187
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.94 E-value=4.6e-09 Score=123.67 Aligned_cols=170 Identities=15% Similarity=0.220 Sum_probs=127.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
-+.+|..-|.+.+..-. ... ..++.+.+ + .-.+..|+|+.|-|. +...++.+-.+|.+.++
T Consensus 187 dllIGf~tGqvq~idp~--~~~--~sklfne~-----r--~i~ktsvT~ikWvpg--------~~~~Fl~a~~sGnlyly 247 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPI--NFE--VSKLFNEE-----R--LINKSSVTCIKWVPG--------SDSLFLVAHASGNLYLY 247 (636)
T ss_pred ceEEeeccCceEEecch--hhH--HHHhhhhc-----c--cccccceEEEEEEeC--------CCceEEEEEecCceEEe
Confidence 57888889998873211 100 00000000 0 012367999999886 25677777889999999
Q ss_pred ECCC--------------C--------------ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 607 DLGS--------------G--------------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 607 Dl~t--------------g--------------~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
|..- + .++..+.--.+.|...+|+|| |+++|+++.||.+||+|..+
T Consensus 248 ~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D------G~~LA~VSqDGfLRvF~fdt 321 (636)
T KOG2394|consen 248 DKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD------GKYLATVSQDGFLRIFDFDT 321 (636)
T ss_pred eccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC------CceEEEEecCceEEEeeccH
Confidence 7641 1 122223333457889999998 99999999999999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeec
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
.+.+..+..--+...||+|||||+||++|+.| .-|.||.+..++.+..-.||.+.|-.+.|.+
T Consensus 322 ~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED--------DLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 322 QELLGVMKSYFGGLLCVCWSPDGKYIVTGGED--------DLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHHHHHhhccceEEEEEcCCccEEEecCCc--------ceEEEEEeccceEEEeccccccceeeEeecc
Confidence 88877776666779999999999999999999 8999999999999999999999988887764
No 188
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.6e-08 Score=118.57 Aligned_cols=167 Identities=20% Similarity=0.316 Sum_probs=119.7
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
.+-..+.||++.|.||...|. +.+|+||+.||+|+||.+.+|.|+.++.- .+.|.+|+|+|.. ..
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~---------G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~-----~~ 455 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPS---------GEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLS-----DL 455 (733)
T ss_pred eeeeeEeccCCeEEEEEecCC---------cceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCC-----Cc
Confidence 345567999999999999986 89999999999999999999999988764 4589999999984 34
Q ss_pred EEEEEeCCCcEEEEECCCC-------------------------------------cEEEEecCCCCCcEEEEEcCCCCE
Q 000450 641 CFLSVGEDFSVALASLETL-------------------------------------RVERMFPGHPNYPAKVVWDCPRGY 683 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~-------------------------------------~~l~~~~gH~~~V~~V~~spdg~~ 683 (1496)
+++.++.+..+.|.+..-| +-++..-.|...|..|.|+..|+|
T Consensus 456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence 5555555555555443211 012233357888999999999999
Q ss_pred EEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEee
Q 000450 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 763 (1496)
Q Consensus 684 L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W 763 (1496)
|++.+.+ ++...|.|.++..+....-+.--.+.+..+.|.+ +.+.+-++....+|++
T Consensus 536 latV~~~-----~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP------------------s~p~lfVaTq~~vRiY 592 (733)
T KOG0650|consen 536 LATVMPD-----SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP------------------SKPYLFVATQRSVRIY 592 (733)
T ss_pred EEEeccC-----CCcceEEEEecccccccCchhhcCCceeEEEecC------------------CCceEEEEeccceEEE
Confidence 9999886 2236899999976554444443444555665653 2233344445678888
Q ss_pred cc
Q 000450 764 QI 765 (1496)
Q Consensus 764 ~l 765 (1496)
+|
T Consensus 593 dL 594 (733)
T KOG0650|consen 593 DL 594 (733)
T ss_pred eh
Confidence 86
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.92 E-value=2.5e-07 Score=110.76 Aligned_cols=278 Identities=14% Similarity=0.084 Sum_probs=160.3
Q ss_pred CCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccc
Q 000450 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1496)
Q Consensus 12 ~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1496)
+.+-.|+|.-++|-|||..|+.++ +..+.++|.+. ....+.|.||...|.|+|
T Consensus 8 r~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~nd-----G~llqtLKgHKDtVycVA--------------------- 60 (1081)
T KOG1538|consen 8 RDKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSD-----GTLLQPLKGHKDTVYCVA--------------------- 60 (1081)
T ss_pred hcccccchheeEECCCCceEEEec-CCEEEEEeCCC-----cccccccccccceEEEEE---------------------
Confidence 345678999999999998887664 45678999984 457788999999999999
Q ss_pred ccccccccCCCCEEEEEeCCCeEEEEECC-CCeEEEeecCCCCCCCCcEEEEcCCCCe-EEEEcc-----cccccCCccc
Q 000450 92 SNVMGKSSLDNGALISACTDGVLCVWSRS-SGHCRRRRKLPPWVGSPSVICTLPSNPR-YVCIGC-----CFIDTNQLSD 164 (1496)
Q Consensus 92 ~~~~g~~s~d~~~LaSas~DG~l~VWdv~-~G~ci~~~~l~~~~g~~~~i~~~s~~~~-ll~~G~-----~~id~~~l~~ 164 (1496)
.+.||+++|||+.|..+.||+-. .|.. .+.|+.......|.|-.. ++.|.- ...+.+....
T Consensus 61 ------ys~dGkrFASG~aDK~VI~W~~klEG~L------kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K 128 (1081)
T KOG1538|consen 61 ------YAKDGKRFASGSADKSVIIWTSKLEGIL------KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK 128 (1081)
T ss_pred ------EccCCceeccCCCceeEEEeccccccee------eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh
Confidence 46778889999999999999864 2321 122222222223333221 222211 0111111111
Q ss_pred ccccccccccccccccCCCCCCCCccEEEEEECCceEEEEEEe-cCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEE
Q 000450 165 HHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVF-HGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQ 243 (1496)
Q Consensus 165 ~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~-~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~ 243 (1496)
..+..++-++.-.-|+......-.+++|-+-+....+-...-. .|..++ |..+++.|++..|..+-+.+++.+.++.
T Consensus 129 ~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nsp--iwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSP--IWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCC--ceEEEecCCCCCCccceEEEEeccceeE
Confidence 1222223333333333333333445666666544333322222 233344 8889998887667644444559999999
Q ss_pred EEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc-ccceeeeeccee
Q 000450 244 LVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS-TIGEICFVDNLF 322 (1496)
Q Consensus 244 lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~-~ige~~~~~~~l 322 (1496)
.+.++..- .+.++.+ + =+..+++++++|..++.++.+.. +.++.... .+|..
T Consensus 207 Fy~LsG~~----------Igk~r~L------~---FdP~CisYf~NGEy~LiGGsdk~-L~~fTR~GvrLGTv------- 259 (1081)
T KOG1538|consen 207 FYQLSGKQ----------IGKDRAL------N---FDPCCISYFTNGEYILLGGSDKQ-LSLFTRDGVRLGTV------- 259 (1081)
T ss_pred EEEeccee----------ecccccC------C---CCchhheeccCCcEEEEccCCCc-eEEEeecCeEEeec-------
Confidence 99988641 0111111 1 12267899999999999887763 33344332 11111
Q ss_pred EeeCCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEec
Q 000450 323 CLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISY 377 (1496)
Q Consensus 323 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~ 377 (1496)
.....|+-.....++ ...++++..||..--|++.+
T Consensus 260 -----g~~D~WIWtV~~~PN---------------sQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 260 -----GEQDSWIWTVQAKPN---------------SQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -----cccceeEEEEEEccC---------------CceEEEEEccCeeehhhhHH
Confidence 112345544444443 23788888898877777653
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.90 E-value=6.3e-08 Score=106.84 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=95.6
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEE--EEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVL--VSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L--~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
..++|.+++|+|+ ++.+ +.|..+..|.+||++ ++.+..+. ...+..+.|+|+ |++++.++
T Consensus 58 ~~~~I~~~~WsP~---------g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~------G~~l~~~g 119 (194)
T PF08662_consen 58 KEGPIHDVAWSPN---------GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPD------GRFLVLAG 119 (194)
T ss_pred CCCceEEEEECcC---------CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCC------CCEEEEEE
Confidence 3467999999997 5543 446678899999996 77777764 567899999999 89999887
Q ss_pred CC---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 647 ED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 647 ~D---gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+ |.+.+||.++.+.+..+. |. .++.++|+|||++++++..... -..|+.++||+. +|+++...
T Consensus 120 ~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r--~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPR--LRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccc--eeccccEEEEEe-cCeEeEec
Confidence 54 669999999988887765 33 4789999999999999875311 122378999998 57766543
No 191
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=6.1e-08 Score=112.87 Aligned_cols=176 Identities=10% Similarity=0.114 Sum_probs=140.7
Q ss_pred CccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000450 509 EKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1496)
...|+++. |||. .+++++.||.++|+..+ -+..+.++.+.--.-+|.+..|+|+
T Consensus 213 ~~~I~sv~------FHp~~plllvaG~d~~lrifqvD-------------Gk~N~~lqS~~l~~fPi~~a~f~p~----- 268 (514)
T KOG2055|consen 213 HGGITSVQ------FHPTAPLLLVAGLDGTLRIFQVD-------------GKVNPKLQSIHLEKFPIQKAEFAPN----- 268 (514)
T ss_pred cCCceEEE------ecCCCceEEEecCCCcEEEEEec-------------CccChhheeeeeccCccceeeecCC-----
Confidence 35788877 8887 78888999999996554 2233455555555678999999997
Q ss_pred cCcCCC-EEEEEeCCCcEEEEECCCCceE--EEEcccC-CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000450 587 GWSFNE-VLVSGSMDCSIRIWDLGSGNLI--TVMHHHV-APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1496)
Q Consensus 587 ~~~~~~-~L~SGs~DgtV~lWDl~tg~~l--~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l 662 (1496)
|+ .+++++.-.....||+.+.+.. ..+.++. ..+....++|+ +++|+..|..|.|.|....+++.+
T Consensus 269 ----G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd------~~fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 269 ----GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD------SNFIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred ----CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCC------CCeEEEcccCceEEeehhhhhhhh
Confidence 55 8999999999999999987743 3444443 35778888999 899999999999999999999998
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 663 ~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
.+|. -.+.|..++|+.|++.|++.|.+ |.|++||++...+++.+....+ +-..++|
T Consensus 339 ~s~K-ieG~v~~~~fsSdsk~l~~~~~~--------GeV~v~nl~~~~~~~rf~D~G~-v~gts~~ 394 (514)
T KOG2055|consen 339 TSFK-IEGVVSDFTFSSDSKELLASGGT--------GEVYVWNLRQNSCLHRFVDDGS-VHGTSLC 394 (514)
T ss_pred heee-eccEEeeEEEecCCcEEEEEcCC--------ceEEEEecCCcceEEEEeecCc-cceeeee
Confidence 8876 45678999999999999998888 9999999999999988876553 3334466
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=5.3e-09 Score=122.91 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=129.6
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEEEecC
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRM 581 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~La~spd 581 (1496)
+.+.||.+-|.++.+..+.. .|++|+.|-.+.| |+. -..+.+..+ .||++-|.|+.|-|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~----lL~SGSDD~r~iv--Wd~-------------~~~KllhsI~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE----LLASGSDDTRLIV--WDP-------------FEYKLLHSISTGHTANIFSVKFVPY 104 (758)
T ss_pred hhhccccceecceeecCCCC----EEeecCCcceEEe--ecc-------------hhcceeeeeecccccceeEEeeecc
Confidence 45789999999999888776 9999999999998 552 223444443 799999999999886
Q ss_pred CCCcccCcCCCEEEEEeCCCcEEEEECCC----------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE
Q 000450 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGS----------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1496)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtV~lWDl~t----------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV 651 (1496)
. .+++++||+.|..|+++|+.. .+..+.+..|+..|..++..|++ .+.|.++++||++
T Consensus 105 t-------nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-----PhtfwsasEDGti 172 (758)
T KOG1310|consen 105 T-------NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-----PHTFWSASEDGTI 172 (758)
T ss_pred C-------CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-----CceEEEecCCcce
Confidence 2 378999999999999999984 23556778899999999999983 4899999999999
Q ss_pred EEEECCCCc-------EEEEe-cCCC--CCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 652 ALASLETLR-------VERMF-PGHP--NYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 652 ~lWdl~~~~-------~l~~~-~gH~--~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+-+|++... +...+ ..+. -...++..+|... +|++|+.| --.++||.+
T Consensus 173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd--------pfarLYD~R 231 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD--------PFARLYDRR 231 (758)
T ss_pred eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC--------chhhhhhhh
Confidence 999998632 11111 1122 2457889999664 78888887 889999963
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.9e-08 Score=116.51 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=118.5
Q ss_pred EEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCC
Q 000450 513 SSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE 592 (1496)
Q Consensus 513 ts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~ 592 (1496)
..+++..+.. .+++|..||.++||.|..+ ..+.....|.+.|.+|.|+|| ++
T Consensus 148 k~vaf~~~gs----~latgg~dg~lRv~~~Ps~---------------~t~l~e~~~~~eV~DL~FS~d---------gk 199 (398)
T KOG0771|consen 148 KVVAFNGDGS----KLATGGTDGTLRVWEWPSM---------------LTILEEIAHHAEVKDLDFSPD---------GK 199 (398)
T ss_pred eEEEEcCCCC----EeeeccccceEEEEecCcc---------------hhhhhhHhhcCccccceeCCC---------Cc
Confidence 3455444444 8999999999999888632 234445679999999999998 89
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEc-----------------------------------------cc-----------
Q 000450 593 VLVSGSMDCSIRIWDLGSGNLITVMH-----------------------------------------HH----------- 620 (1496)
Q Consensus 593 ~L~SGs~DgtV~lWDl~tg~~l~~~~-----------------------------------------~H----------- 620 (1496)
+|++-+.| ..+|||..+|..+.... .+
T Consensus 200 ~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~ 278 (398)
T KOG0771|consen 200 FLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI 278 (398)
T ss_pred EEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence 99999999 89999999872111000 01
Q ss_pred --CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000450 621 --VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 621 --~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~-gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~ 697 (1496)
...|.+++++++ |++++-|+.||.|.+++..+.++++..+ .|...|+.+.|+||.+++++.+.|
T Consensus 279 ~~~~siSsl~VS~d------Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~------- 345 (398)
T KOG0771|consen 279 KRFKSISSLAVSDD------GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD------- 345 (398)
T ss_pred hccCcceeEEEcCC------CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccC-------
Confidence 136888999988 9999999999999999999999887664 699999999999999999987776
Q ss_pred CCEEEEEEC
Q 000450 698 VDVLFIWDV 706 (1496)
Q Consensus 698 dg~V~VWDl 706 (1496)
.+..|-.+
T Consensus 346 -~~~~v~~l 353 (398)
T KOG0771|consen 346 -NEAAVTKL 353 (398)
T ss_pred -CceeEEEE
Confidence 56666544
No 194
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.83 E-value=3.6e-08 Score=124.46 Aligned_cols=143 Identities=22% Similarity=0.255 Sum_probs=122.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
++++|+.-|.|.+|.|. .+.+++ .+.||.+.+..+.++.| +++++|.|+|.++++|
T Consensus 147 ~i~~gsv~~~iivW~~~--------------~dn~p~-~l~GHeG~iF~i~~s~d---------g~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPH--------------EDNKPI-RLKGHEGSIFSIVTSLD---------GRYIASVSDDRSIRLW 202 (967)
T ss_pred EEEeccccccEEEEecc--------------ccCCcc-eecccCCceEEEEEccC---------CcEEEEEecCcceeee
Confidence 88999999999996654 112233 68899999999999987 8999999999999999
Q ss_pred ECCCCceEE-EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC-CcEEEEEcCCCCEE
Q 000450 607 DLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN-YPAKVVWDCPRGYI 684 (1496)
Q Consensus 607 Dl~tg~~l~-~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~-~V~~V~~spdg~~L 684 (1496)
++++.+... +..+|+..|+++.|.|. .++|++.|-+.++|+.. +..+..+.+|.. .++.++..++...+
T Consensus 203 ~i~s~~~~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 203 PIDSREVLGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ecccccccCcccccccceeEEEEeccc--------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEE
Confidence 999988765 77799999999999985 89999999999999755 555668888865 68999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+|++.| +.+++||.....
T Consensus 274 vT~g~D--------s~lk~~~l~~r~ 291 (967)
T KOG0974|consen 274 VTGGND--------STLKLWDLNGRG 291 (967)
T ss_pred EeeccC--------cchhhhhhhccc
Confidence 999988 999999987643
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.83 E-value=1.2e-09 Score=133.37 Aligned_cols=120 Identities=18% Similarity=0.347 Sum_probs=109.5
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
+.++.+.||...|.|..|... +.++++|++|..|+||..+++.++....+|.+.|+.++.+.+ ..
T Consensus 181 k~ikrLlgH~naVyca~fDrt---------g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------n~ 245 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRT---------GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------NT 245 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccc---------cceEeecCccceeeeeeccchhhhccCCCCccccchhccchh------hh
Confidence 445667899999999999875 899999999999999999999999999999999999999887 67
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
.++++|.|..|++|-+.++.++..+.||.+.|++++|+|-. +.+.| |++++||.+
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~d--------gt~~~wd~r 300 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDD--------GTCRIWDAR 300 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCC--------CceEecccc
Confidence 89999999999999999999999999999999999999965 33444 999999987
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.81 E-value=2.9e-07 Score=114.87 Aligned_cols=206 Identities=16% Similarity=0.119 Sum_probs=142.8
Q ss_pred eecccccCccccccccCCCC--CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~--~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
++.+..+|.+-+||+..... ...+......|...|+++.++.... +..+++++.||.|..|.-+.+... ...-
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~--~~~f~s~ssDG~i~~W~~~~l~~P---~e~~ 332 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH--NTEFFSLSSDGSICSWDTDMLSLP---VEGL 332 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC--CCceEEEecCCcEeeeeccccccc---hhhc
Confidence 67778899999999987654 3334444467888898888766443 246899999999999765544331 1000
Q ss_pred ccCCcce-EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE---EECCCCc-----eEEEEcccCCCEEE
Q 000450 556 KVNSHVS-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI---WDLGSGN-----LITVMHHHVAPVRQ 626 (1496)
Q Consensus 556 d~~s~~~-~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l---WDl~tg~-----~l~~~~~H~~~V~~ 626 (1496)
..++... ...+ .-...++++.|.+. +...++.|+.+|.|.- ++.+.+. ....+..|.++|++
T Consensus 333 ~~~~~~~~~~~~-~~~~~~t~~~F~~~--------~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 333 LLESKKHKGQQS-SKAVGATSLKFEPT--------DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA 403 (555)
T ss_pred cccccccccccc-ccccceeeEeeccC--------CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence 0000000 0011 11346899999886 3788999999999876 3443332 23466778999999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 627 l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~-~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+.++|-. -..|.+++ |.+|+||+.. ...++..+..+...|++++|||...-++....+ ||.|.+||
T Consensus 404 v~~nPF~-----~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~-------~G~l~iWD 470 (555)
T KOG1587|consen 404 VSRNPFY-----PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG-------DGNLDIWD 470 (555)
T ss_pred eecCCCc-----cceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC-------CCceehhh
Confidence 9999972 33555555 9999999988 778888888899999999999988755444332 39999999
Q ss_pred CCCCe
Q 000450 706 VKTGA 710 (1496)
Q Consensus 706 l~tg~ 710 (1496)
+....
T Consensus 471 Ll~~~ 475 (555)
T KOG1587|consen 471 LLQDD 475 (555)
T ss_pred hhccc
Confidence 96543
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.77 E-value=4.5e-07 Score=115.79 Aligned_cols=239 Identities=14% Similarity=0.084 Sum_probs=158.1
Q ss_pred CCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEE
Q 000450 496 RQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLC 575 (1496)
Q Consensus 496 ~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~ 575 (1496)
.+.|.++..+.+|...|..++..++.. +.+++|+.||+|++|+...+.+. ..+.++..++.--..++.+
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~---s~FvsgS~DGtVKvW~~~k~~~~--------~~s~rS~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHT---SLFVSGSDDGTVKVWNLRKLEGE--------GGSARSELTYSPEGSRVEK 1103 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCC---ceEEEecCCceEEEeeehhhhcC--------cceeeeeEEEeccCCceEE
Confidence 345677788889999998888766552 38999999999999666544432 1233444555444667888
Q ss_pred EEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC--c-----------------eE--E-------------------
Q 000450 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--N-----------------LI--T------------------- 615 (1496)
Q Consensus 576 La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg--~-----------------~l--~------------------- 615 (1496)
+...+. ++.+|.|+.||.|++.++... . .+ +
T Consensus 1104 vt~~~~---------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1104 VTMCGN---------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred EEeccC---------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence 887765 678888899999999888641 0 00 0
Q ss_pred ---------------EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcC
Q 000450 616 ---------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDC 679 (1496)
Q Consensus 616 ---------------~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~-gH~~~V~~V~~sp 679 (1496)
......|.|++++.+|. ++.++.|..-|.+.+||++-+.++.... ++..++..+..+|
T Consensus 1175 iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~------~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW------CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred eEEecchhhhhHHhhhcCccccceeEEEecCC------ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 01112356788888876 8899999999999999999888776653 3446787777766
Q ss_pred CC---CEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeccc---ccccccceEEcCCcccccccee
Q 000450 680 PR---GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI---SMNSISGSVLNGNTSVSSLLLP 753 (1496)
Q Consensus 680 dg---~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~---~~~~~sg~v~~g~~~~s~~l~~ 753 (1496)
-. ...++++.. +.+.|.+|++++|.+-+++-.-.....+..+.+.. .+.... .+.+|--...+-++.
T Consensus 1249 ~~~~~S~~vs~~~~------~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~-~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSS------SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLA-GISCGVCEKNGFLLT 1321 (1431)
T ss_pred cCCCCceEEEeccc------CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccc-ceeeecccCCceeee
Confidence 43 466665542 12789999999998887776553444444343321 011111 122233344455556
Q ss_pred eccCCcEEeecccc
Q 000450 754 IHEDGTFRQSQIQN 767 (1496)
Q Consensus 754 ~~~D~~ir~W~l~~ 767 (1496)
...|.+||.|+...
T Consensus 1322 ggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPTR 1335 (1431)
T ss_pred cCCccceeeccCCC
Confidence 66699999999633
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.76 E-value=3.3e-07 Score=109.77 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=128.8
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC--CCC-----------------------CCc
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH--NSP-----------------------GAS 554 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~--d~~-----------------------~~~ 554 (1496)
.+.+++++|.+.|.++++..+.. ++++|+.|..+.+|.-. +++. .++ .-.
T Consensus 44 ~llqtLKgHKDtVycVAys~dGk----rFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFgl 118 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGK----RFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGL 118 (1081)
T ss_pred ccccccccccceEEEEEEccCCc----eeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccc
Confidence 56678999999999999888887 99999999999995321 1110 000 012
Q ss_pred cccCCcceEEEEecC--CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc---ccCCCEEEEEE
Q 000450 555 LKVNSHVSRQYFLGH--TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVAPVRQIIL 629 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH--~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~---~H~~~V~~l~~ 629 (1496)
|..+... ...| ..+|.+.+|..| |++|+-|-.||||.+-+- +|+....+. +...+|+++.|
T Consensus 119 WS~~qK~----V~K~kss~R~~~CsWtnD---------GqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 119 WSPEQKS----VSKHKSSSRIICCSWTND---------GQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred cChhhhh----HHhhhhheeEEEeeecCC---------CcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEe
Confidence 2221110 0112 235666677665 899999999999999874 454433333 46678999999
Q ss_pred CCCCCC----------------------------------------CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 630 SPPQTE----------------------------------------HPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 630 sPd~~~----------------------------------------~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
+|..+. -+.|.+++.|+.|+.++++- +.|-.+.+.....
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D 263 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQD 263 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccc
Confidence 997432 25677777888888887775 4455566665667
Q ss_pred CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 670 ~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
.+|+.|..+|++.+++.||.| |+|--|++-..
T Consensus 264 ~WIWtV~~~PNsQ~v~~GCqD--------GTiACyNl~fS 295 (1081)
T KOG1538|consen 264 SWIWTVQAKPNSQYVVVGCQD--------GTIACYNLIFS 295 (1081)
T ss_pred eeEEEEEEccCCceEEEEEcc--------CeeehhhhHHh
Confidence 799999999999999999999 99999998543
No 199
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.3e-07 Score=111.64 Aligned_cols=191 Identities=14% Similarity=0.133 Sum_probs=138.4
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccC----------------CEEEEEEcCCcEEEEE
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAP----------------YAIVYGFFSGEIEVIQ 541 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P----------------~~lv~Gs~dG~I~V~~ 541 (1496)
++....++.+++|++.+++.. +.......-.+.-++..+.=...++| ..+|.|...|+|.+
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~-~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~-- 84 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQ-QEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL-- 84 (541)
T ss_pred EeecCCCCeEEEEEccCceee-eeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE--
Confidence 455566777888887765331 11111111122233332222222444 16889999999888
Q ss_pred ecccccCCCCCCccccCCcceEEEE--ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc
Q 000450 542 FDLFERHNSPGASLKVNSHVSRQYF--LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH 619 (1496)
Q Consensus 542 ~~~l~~~d~~~~~~d~~s~~~~~~l--~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~ 619 (1496)
++ ...++....+ .+|.+.|+++.++.+ -..|.|++.|+.|..|+...+..++.+.+
T Consensus 85 ys-------------~~~g~it~~~st~~h~~~v~~~~~~~~---------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 85 YS-------------VAGGEITAKLSTDKHYGNVNEILDAQR---------LGCIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred EE-------------ecCCeEEEEEecCCCCCcceeeecccc---------cCceEecCCceeEEEEecccceeeeeecc
Confidence 33 2234445555 469999999998875 57899999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC-----CCEEEEEEcCCCCC
Q 000450 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP-----RGYIACLCRDHSRT 694 (1496)
Q Consensus 620 H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd-----g~~L~tgs~D~sg~ 694 (1496)
....+.++.++|| +.++++++ +.|++||+++++.+..|.||.++|.++.|.-+ |.|++++..-
T Consensus 143 ~~~~~~sl~is~D------~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~---- 210 (541)
T KOG4547|consen 143 QKPLVSSLCISPD------GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA---- 210 (541)
T ss_pred CCCccceEEEcCC------CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc----
Confidence 9999999999999 88998886 68999999999999999999999999999776 6777654322
Q ss_pred CCCCCEEEEEECCC
Q 000450 695 SDAVDVLFIWDVKT 708 (1496)
Q Consensus 695 ~D~dg~V~VWDl~t 708 (1496)
+.-+.+|-++.
T Consensus 211 ---~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ---ERGITVWVVEK 221 (541)
T ss_pred ---ccceeEEEEEc
Confidence 14577786643
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=6.3e-07 Score=102.44 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=97.6
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEE-Ee-CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVS-GS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L~S-Gs-~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
|...+.++.+++. +.+|+- ++ .-|.|.+||+.+-+....+..|.+++.+++|+|+ |.++|++|
T Consensus 128 n~~gl~AlS~n~~---------n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~------G~llATAS 192 (391)
T KOG2110|consen 128 NPKGLCALSPNNA---------NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD------GTLLATAS 192 (391)
T ss_pred CccceEeeccCCC---------CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC------CCEEEEec
Confidence 3444665555553 344442 22 3578999999999999999999999999999999 99999999
Q ss_pred CCCcE-EEEECCCCcEEEEecCCCC--CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 647 EDFSV-ALASLETLRVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 647 ~DgsV-~lWdl~~~~~l~~~~gH~~--~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+.|+| ||+++.+|+.+..|+.... .|.+++|+||+.+|.+.+.. ++|+|+.++...
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T--------eTVHiFKL~~~~ 251 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT--------ETVHIFKLEKVS 251 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC--------CeEEEEEecccc
Confidence 99976 8999999999999975433 57999999999999988877 999999987644
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=5.3e-07 Score=113.37 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=127.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+......+.+||...++.-...... .-....|+.+.++.+.. -..+++|+.||.|+| |+..... |
T Consensus 1079 i~~ad~r~~i~vwd~e~~~~l~~F~n~-~~~~t~Vs~l~liNe~D--~aLlLtas~dGvIRI--wk~y~~~------~-- 1145 (1387)
T KOG1517|consen 1079 IAAADDRERIRVWDWEKGRLLNGFDNG-AFPDTRVSDLELINEQD--DALLLTASSDGVIRI--WKDYADK------W-- 1145 (1387)
T ss_pred eEEcCCcceEEEEecccCceeccccCC-CCCCCccceeeeecccc--hhheeeeccCceEEE--ecccccc------c--
Confidence 444455678899998876442211111 11235688888776542 127899999999999 5432221 1
Q ss_pred CCcceEEEE---ec----CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc-CCCEEEEEE
Q 000450 558 NSHVSRQYF---LG----HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH-VAPVRQIIL 629 (1496)
Q Consensus 558 ~s~~~~~~l---~g----H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H-~~~V~~l~~ 629 (1496)
...+.+..+ .+ -.+.-.-+.|... ..+|+++|.-..|+|||.......+.+... ...|+++.-
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~---------~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQ---------SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhh---------CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 111222211 22 1222233456654 344444445789999999988877766543 345666654
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCc---EEEEecCCCCC--cEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEE
Q 000450 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLR---VERMFPGHPNY--PAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFI 703 (1496)
Q Consensus 630 sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~---~l~~~~gH~~~--V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~V 703 (1496)
+-. .|+.++.|..||+|++||.+... .+...+.|... |..+.+.+.|- .|++||.| |.|++
T Consensus 1217 ~~~-----~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~--------G~I~~ 1283 (1387)
T KOG1517|consen 1217 DLV-----HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD--------GDIQL 1283 (1387)
T ss_pred ccc-----CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC--------CeEEE
Confidence 333 28999999999999999987532 46777889887 99999988664 59999999 99999
Q ss_pred EECCCC
Q 000450 704 WDVKTG 709 (1496)
Q Consensus 704 WDl~tg 709 (1496)
||++..
T Consensus 1284 ~DlR~~ 1289 (1387)
T KOG1517|consen 1284 LDLRMS 1289 (1387)
T ss_pred EecccC
Confidence 999874
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.68 E-value=6.1e-08 Score=113.94 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=129.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++..+.||.+.| .. ..++..+....|.+.|.|-.|+|| |.-|++.+.||.|++|
T Consensus 77 ~~~i~s~DGkf~i--l~--------------k~~rVE~sv~AH~~A~~~gRW~~d---------GtgLlt~GEDG~iKiW 131 (737)
T KOG1524|consen 77 TLLICSNDGRFVI--LN--------------KSARVERSISAHAAAISSGRWSPD---------GAGLLTAGEDGVIKIW 131 (737)
T ss_pred eEEEEcCCceEEE--ec--------------ccchhhhhhhhhhhhhhhcccCCC---------CceeeeecCCceEEEE
Confidence 5777889999998 22 234556677899999999999998 8999999999999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~t 686 (1496)
. ++|.+..++.....+|+|++|.|+. .+.+.+.+ +.+.+=.+.-...+.....|.+-|.++.|++..+.+++
T Consensus 132 S-rsGMLRStl~Q~~~~v~c~~W~p~S-----~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 132 S-RSGMLRSTVVQNEESIRCARWAPNS-----NSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred e-ccchHHHHHhhcCceeEEEEECCCC-----CceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence 8 6788877887788899999999993 34444443 34555566666667778899999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeec
Q 000450 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 687 gs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
|+.| -..+|||.. |+.+..-..|.-+++.+.|.+
T Consensus 204 gGED--------~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 204 GGED--------FRFKIWDAQ-GANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred cCCc--------eeEEeeccc-CcccccCChhccceeeeeecc
Confidence 9999 999999974 666666667777777766664
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2.6e-07 Score=104.96 Aligned_cols=173 Identities=12% Similarity=0.026 Sum_probs=131.4
Q ss_pred ccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEec
Q 000450 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHR 580 (1496)
Q Consensus 502 ~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~La~sp 580 (1496)
...+.+|.+-|.++.|..... +|++|+.|-.+++|..+.+. ...+.++++.... |...|.||+|..
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~----~L~SGGDD~~~~~W~~de~~---------~~k~~KPI~~~~~~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDR----FLASGGDDMHGRVWNVDELM---------VRKTPKPIGVMEHPHRSNIFSLEFDL 115 (609)
T ss_pred hhhhhhhccccceeeeccCCe----EEeecCCcceeeeechHHHH---------hhcCCCCceeccCccccceEEEEEcc
Confidence 344688999999998665554 89999999999996554221 1234466665543 447899999987
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc--CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H--~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
. ++.+.||+.+++|...|+++.+.+.++... .+.|..+..+|. .++|++.+.|+.|.+||.+.
T Consensus 116 ~---------N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~------DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 116 E---------NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT------DNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred C---------CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC------CceEEEEecCceEEEEeccC
Confidence 5 789999999999999999999988887543 358999999998 89999999999999999987
Q ss_pred Cc-EEE--EecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 659 LR-VER--MFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 659 ~~-~l~--~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
.. ... ...........+-|+|... +|++.+.. +-+-+||++..+
T Consensus 181 ~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~--------~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 181 RQNPISLVLPANSGKNFYTAEFHPETPALILVNSET--------GGPNVFDRRMQA 228 (609)
T ss_pred CCCCCceeeecCCCccceeeeecCCCceeEEecccc--------CCCCceeecccc
Confidence 54 221 1112334567899999765 55666665 789999997644
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.66 E-value=1.1e-07 Score=111.88 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=114.1
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
.-..+..|.+.+.|-.+.++.. .+++.++||.|++|.- +|-...++.....+|.|++|.|
T Consensus 96 VE~sv~AH~~A~~~gRW~~dGt----gLlt~GEDG~iKiWSr----------------sGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSPDGA----GLLTAGEDGVIKIWSR----------------SGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred hhhhhhhhhhhhhhcccCCCCc----eeeeecCCceEEEEec----------------cchHHHHHhhcCceeEEEEECC
Confidence 3345678888888877444444 8999999999999432 2222233334456899999999
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~ 660 (1496)
+ +...+.+.+. .+.+=-+.....+-.++.|.+-|.++.|+|. .+.++||++|-..++||-. |+
T Consensus 156 ~--------S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------s~lI~sgGED~kfKvWD~~-G~ 218 (737)
T KOG1524|consen 156 N--------SNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------SNIIASGGEDFRFKIWDAQ-GA 218 (737)
T ss_pred C--------CCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCcc------ccceeecCCceeEEeeccc-Cc
Confidence 8 2667777654 3555566666667889999999999999998 8999999999999999965 66
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 661 ~l~~~~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
.+..-..|..+|++|+|.|| ...++++.+
T Consensus 219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred ccccCChhccceeeeeeccc-cceeeeeee
Confidence 66666778889999999998 444556653
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=7.9e-07 Score=110.36 Aligned_cols=190 Identities=8% Similarity=0.085 Sum_probs=123.1
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEE-cCCcEEEEEecccccCCCCCCccccCCcc
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs-~dG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1496)
..+.+||+..... .....+.+|. .+.. |+|+ .++++. .+|.+.||.|+ ..++.
T Consensus 228 ~~i~i~dl~tg~~--~~l~~~~g~~---~~~~------wSPDG~~La~~~~~~g~~~Iy~~d-------------~~~~~ 283 (429)
T PRK01742 228 SQLVVHDLRSGAR--KVVASFRGHN---GAPA------FSPDGSRLAFASSKDGVLNIYVMG-------------ANGGT 283 (429)
T ss_pred cEEEEEeCCCCce--EEEecCCCcc---Ccee------ECCCCCEEEEEEecCCcEEEEEEE-------------CCCCC
Confidence 3577888754322 1122233332 2334 5665 677764 68888887666 22233
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEE-EEeCCCcEEEEECCCC-ceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~-SGs~DgtV~lWDl~tg-~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
...+..|...+....|+|| ++.|+ ++..++...+|++... .....+ .+.+ ....|+|+ |
T Consensus 284 -~~~lt~~~~~~~~~~wSpD---------G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD------G 344 (429)
T PRK01742 284 -PSQLTSGAGNNTEPSWSPD---------GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD------G 344 (429)
T ss_pred -eEeeccCCCCcCCEEECCC---------CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC------C
Confidence 3456667778889999998 66555 4456788888887532 222333 3443 45778998 8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC--CCCeEEEEEeC
Q 000450 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARERVLRG 717 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl--~tg~~~~~l~g 717 (1496)
+.++.++.|+ +.+||+.+++.......+ ....+.|+|||++|+.++.+ +.+++|++ .+|...+.+.+
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~--------g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQ--------GLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcC--------CCceEEEEEECCCCceEEccC
Confidence 8888888766 555999988765443332 24568899999999999887 76777765 36888888988
Q ss_pred CCCCceeeeee
Q 000450 718 TASHSMFDHFC 728 (1496)
Q Consensus 718 h~a~vi~~~~~ 728 (1496)
|.+.+....+.
T Consensus 414 ~~g~~~~p~ws 424 (429)
T PRK01742 414 SDGQVKFPAWS 424 (429)
T ss_pred CCCCCCCcccC
Confidence 87654443333
No 206
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.62 E-value=5.4e-07 Score=114.18 Aligned_cols=146 Identities=17% Similarity=0.159 Sum_probs=116.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE-EecCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-MFPGHP 669 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~-~~~gH~ 669 (1496)
.-++++|+.-+.|.+|+...-+.-..+.+|.+.|.++.++-+ |++++++|.|+++|+|++++.+.+. ..-||+
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------GRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccC------CcEEEEEecCcceeeeecccccccCccccccc
Confidence 568999999999999999843333468999999999999998 9999999999999999999988876 677999
Q ss_pred CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccc
Q 000450 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSS 749 (1496)
Q Consensus 670 ~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~ 749 (1496)
++|+.++|.|. ++++++.| .+.++|+. .++.+.++.+|...-+--...+.....
T Consensus 219 aRvw~~~~~~n--~i~t~ged--------ctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~--------------- 272 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGED--------CTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVII--------------- 272 (967)
T ss_pred ceeEEEEeccc--eeEEeccc--------eEEEEEec-ccceehhhhhhhhcceeEEEEcCCceE---------------
Confidence 99999999998 89999999 99999975 456666899998766553233221111
Q ss_pred cceeeccCCcEEeecccccc
Q 000450 750 LLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 750 ~l~~~~~D~~ir~W~l~~~e 769 (1496)
.++-..|+++|.|++....
T Consensus 273 -~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 273 -KVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -EEeeccCcchhhhhhhccc
Confidence 1222338899999875443
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.61 E-value=9.6e-07 Score=99.25 Aligned_cols=192 Identities=12% Similarity=0.035 Sum_probs=142.2
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
+.+..+..+.+++..+..+ -....++..|...|+.+.+.+... +|++++.|..-.| |....++
T Consensus 26 Av~~~~~evhiy~~~~~~~-w~~~htls~Hd~~vtgvdWap~sn----rIvtcs~drnayV--w~~~~~~---------- 88 (361)
T KOG1523|consen 26 AVSPNNHEVHIYSMLGADL-WEPAHTLSEHDKIVTGVDWAPKSN----RIVTCSHDRNAYV--WTQPSGG---------- 88 (361)
T ss_pred EeccCCceEEEEEecCCCC-ceeceehhhhCcceeEEeecCCCC----ceeEccCCCCccc--cccCCCC----------
Confidence 3334444455555444332 134567889999999988444443 8999999999999 5532221
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceE----EEEcccCCCEEEEEECCCCC
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI----TVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l----~~~~~H~~~V~~l~~sPd~~ 634 (1496)
+-++...+..|+..++|+.|+|. ++.++.||.-..|.||-++..+-- +.-+-+...|+++.|+|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~---------enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn-- 157 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPK---------ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN-- 157 (361)
T ss_pred eeccceeEEEeccceeeEeecCc---------CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC--
Confidence 22455667779999999999997 799999999999999998755422 233446678999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEEC-----CC-------------CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCC
Q 000450 635 EHPWSDCFLSVGEDFSVALASL-----ET-------------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl-----~~-------------~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D 696 (1496)
+-+++.||.|+.+++++. ++ |+.+..+....+.|..+.|+|+|..|+-.+.|
T Consensus 158 ----nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd------ 227 (361)
T KOG1523|consen 158 ----NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD------ 227 (361)
T ss_pred ----cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC------
Confidence 789999999999999974 21 23334444567789999999999999999998
Q ss_pred CCCEEEEEECCCCe
Q 000450 697 AVDVLFIWDVKTGA 710 (1496)
Q Consensus 697 ~dg~V~VWDl~tg~ 710 (1496)
+++.+=|.....
T Consensus 228 --s~v~~~da~~p~ 239 (361)
T KOG1523|consen 228 --STVSFVDAAGPS 239 (361)
T ss_pred --CceEEeecCCCc
Confidence 899999886654
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1.2e-06 Score=99.62 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=119.8
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
++....+..+++++.....+. .+.. .....|+|+++-+-.. ..++.|+..| |.+|..+.-.......+ .
T Consensus 113 fava~nddvVriy~ksst~pt-~Lks---~sQrnvtclawRPlsa---selavgCr~g-IciW~~s~tln~~r~~~---~ 181 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPT-KLKS---VSQRNVTCLAWRPLSA---SELAVGCRAG-ICIWSDSRTLNANRNIR---M 181 (445)
T ss_pred hhhhccCcEEEEeccCCCCCc-eecc---hhhcceeEEEeccCCc---ceeeeeecce-eEEEEcCcccccccccc---c
Confidence 445556667777776653331 1111 1135689998433221 2788888765 66644331111000000 0
Q ss_pred CCcce--EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCC
Q 000450 558 NSHVS--RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 558 ~s~~~--~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs-~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
.+.-+ +..-.|| ..|+++.|.+| +..|++++ .|..|.|||..+|..+....--.+.+.-+.|+||
T Consensus 182 ~s~~~~qvl~~pgh-~pVtsmqwn~d---------gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd-- 249 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGH-NPVTSMQWNED---------GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD-- 249 (445)
T ss_pred ccccchhheeCCCC-ceeeEEEEcCC---------CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC--
Confidence 01111 2223456 68999999997 78888887 5678999999999876555445677999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEEc
Q 000450 635 EHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCR 689 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~ 689 (1496)
+++|..+.-|+..++|+... ..+++-.. ..+.|...+|+|+|++|+-.+.
T Consensus 250 ----gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 250 ----GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ----CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc
Confidence 99999999999999996543 33333333 3348999999999999988776
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.60 E-value=4.5e-08 Score=113.87 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=133.9
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~ 582 (1496)
..+..| ..|..+.|++.-. .|++++..|.+.. . |+.+|+.+..+..-.+.+..+.-+|.
T Consensus 204 HClk~~-~~v~rLeFLPyHf----LL~~~~~~G~L~Y---~------------DVS~GklVa~~~t~~G~~~vm~qNP~- 262 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHF----LLVAASEAGFLKY---Q------------DVSTGKLVASIRTGAGRTDVMKQNPY- 262 (545)
T ss_pred eehhhc-Cchhhhcccchhh----eeeecccCCceEE---E------------eechhhhhHHHHccCCccchhhcCCc-
Confidence 334433 4577777444333 7888888888875 2 45567777777666788888888886
Q ss_pred CCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000450 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1496)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l 662 (1496)
+..+-.|...|+|.+|.....+++..+..|.++|.+|++.|. |++++|.+.|+.++|||++....+
T Consensus 263 --------NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~------G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 263 --------NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRG------GRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred --------cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCC------CcEEeecccccceeEeeecccccc
Confidence 788999999999999999999999999999999999999998 999999999999999999998877
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE-CCC--CeEEEEEeCCC--CCceeeeeec
Q 000450 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD-VKT--GARERVLRGTA--SHSMFDHFCK 729 (1496)
Q Consensus 663 ~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD-l~t--g~~~~~l~gh~--a~vi~~~~~~ 729 (1496)
.++.. ..+...+++|--| .|+++-. ..|.||. .-. +....-+..|. +.+..+.||+
T Consensus 329 ~t~~t-p~~a~~ls~Sqkg-lLA~~~G---------~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 329 HTYRT-PHPASNLSLSQKG-LLALSYG---------DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred ceeec-CCCcccccccccc-ceeeecC---------CeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence 76654 4566778887544 4554443 4799994 322 23333333333 2455567885
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.58 E-value=5.4e-07 Score=101.21 Aligned_cols=159 Identities=12% Similarity=0.059 Sum_probs=126.9
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~ 588 (1496)
...|+|-++.++.. .++.+..+.++.|+.+.. ... -+..+++..|...|+++.|.|.
T Consensus 10 ~~pitchAwn~drt----~iAv~~~~~evhiy~~~~-------~~~-----w~~~htls~Hd~~vtgvdWap~------- 66 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT----QIAVSPNNHEVHIYSMLG-------ADL-----WEPAHTLSEHDKIVTGVDWAPK------- 66 (361)
T ss_pred cCceeeeeecCCCc----eEEeccCCceEEEEEecC-------CCC-----ceeceehhhhCcceeEEeecCC-------
Confidence 35788888666665 899999999999966541 111 2567889999999999999997
Q ss_pred cCCCEEEEEeCCCcEEEEECCC-C--ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE----
Q 000450 589 SFNEVLVSGSMDCSIRIWDLGS-G--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---- 661 (1496)
Q Consensus 589 ~~~~~L~SGs~DgtV~lWDl~t-g--~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~---- 661 (1496)
.+.+++|+.|..-.+|.... + ++.-.+.-+...+++|.|+|. .+.|++||.-+.|.||=++...-
T Consensus 67 --snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~------enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 67 --SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK------ENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred --CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc------CceEEeccCccEEEEEEEecccceehh
Confidence 78999999999999999843 3 344566678889999999999 89999999999999987764321
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.+.-..+.+.|+++.|+|++-+|++|+.| +..||+..
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaGs~D--------~k~rVfSa 175 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTD--------GKCRVFSA 175 (361)
T ss_pred hhhCCccccceeeeeccCCcceecccccC--------cceeEEEE
Confidence 11223456678999999999999999999 99999864
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.9e-07 Score=105.98 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=107.4
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC------CCceEEEEcc-cCCCEEEEEECCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG------SGNLITVMHH-HVAPVRQIILSPPQT 634 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~------tg~~l~~~~~-H~~~V~~l~~sPd~~ 634 (1496)
+.+-+.+|.+.|++|.|+.+ +++|+||+.|..+++|.+. +.+++..+.. |..-|.+++|.-.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N---------~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-- 116 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHN---------DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-- 116 (609)
T ss_pred hhhhhhhhccccceeeeccC---------CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--
Confidence 34456799999999999986 8999999999999999985 4566766655 4488999999987
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC--CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH--~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
...+.+|+.|++|.+.|+++.+.+..+... .+.|+.+..+|.++.+++.+.+ +.|.+||.+...
T Consensus 117 ----N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~--------~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 117 ----NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA--------KLVSFIDNRDRQ 182 (609)
T ss_pred ----CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC--------ceEEEEeccCCC
Confidence 778999999999999999999988887522 2389999999999999999998 999999997643
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.56 E-value=0.00022 Score=86.61 Aligned_cols=110 Identities=24% Similarity=0.222 Sum_probs=76.2
Q ss_pred EEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccCCCCEEEEEeC
Q 000450 31 LYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACT 110 (1496)
Q Consensus 31 LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d~~~LaSas~ 110 (1496)
+++-..+|+|.+.|..+ .+.+..+....+.-..+. +++|+.++..++.
T Consensus 9 ~V~~~~~~~v~viD~~t-----~~~~~~i~~~~~~h~~~~---------------------------~s~Dgr~~yv~~r 56 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT-----NKVVARIPTGGAPHAGLK---------------------------FSPDGRYLYVANR 56 (369)
T ss_dssp EEEEGGGTEEEEEETTT------SEEEEEE-STTEEEEEE----------------------------TT-SSEEEEEET
T ss_pred EEEecCCCEEEEEECCC-----CeEEEEEcCCCCceeEEE---------------------------ecCCCCEEEEEcC
Confidence 35667889999999984 345555553333222233 6888889999999
Q ss_pred CCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccccccccCCCCCCCCcc
Q 000450 111 DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKC 190 (1496)
Q Consensus 111 DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~ 190 (1496)
||.|.++|+.+++.+.+.+. |....-.++++|++++.++++ ..+
T Consensus 57 dg~vsviD~~~~~~v~~i~~----G~~~~~i~~s~DG~~~~v~n~--------------------------------~~~ 100 (369)
T PF02239_consen 57 DGTVSVIDLATGKVVATIKV----GGNPRGIAVSPDGKYVYVANY--------------------------------EPG 100 (369)
T ss_dssp TSEEEEEETTSSSEEEEEE-----SSEEEEEEE--TTTEEEEEEE--------------------------------ETT
T ss_pred CCeEEEEECCcccEEEEEec----CCCcceEEEcCCCCEEEEEec--------------------------------CCC
Confidence 99999999999999988765 333444678899999988876 127
Q ss_pred EEEEEECCceEEEEEEec
Q 000450 191 TLVIVDTYGLTIVQTVFH 208 (1496)
Q Consensus 191 ~I~v~D~~t~~~l~~l~~ 208 (1496)
.+.++|..|+++++.+..
T Consensus 101 ~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEEEEETTT--EEEEEE-
T ss_pred ceeEeccccccceeeccc
Confidence 899999999999998865
No 213
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.56 E-value=2.8e-06 Score=102.58 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=111.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEc--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~--~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH 668 (1496)
...++-|...|.|-+++...|+.-..+. .|.++|.++.++-+ -.||.|++.|..+.+|+..+++..+.+.+.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~ 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR------LGCIYSVGADLKVVYILEKEKVIIRIWKEQ 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccc------cCceEecCCceeEEEEecccceeeeeeccC
Confidence 4578888899999999999999888776 58999999998877 679999999999999999999999999988
Q ss_pred CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 669 ~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
...+.+++.+||++.|++++ +.|++||+++++.+..++||.+.+-+..|-
T Consensus 144 ~~~~~sl~is~D~~~l~~as----------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS----------RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred CCccceEEEcCCCCEEEecc----------ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 88999999999999999987 579999999999999999999998888776
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.54 E-value=1.3e-07 Score=110.12 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=118.6
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
|..+++++.| ..|..|.|-|- .-+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|- .
T Consensus 200 GtElHClk~~-~~v~rLeFLPy---------HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~------N 263 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPY---------HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY------N 263 (545)
T ss_pred CcEEeehhhc-Cchhhhcccch---------hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc------c
Confidence 4456666655 46899999996 578999999999999999999999999988999999999997 7
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
..+..|...|+|.+|+....+++..+..|.++|.+|++.++|.|++|.+.| ..++|||+++...+.++..
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D--------r~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD--------RKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc--------cceeEeeeccccccceeec
Confidence 789999999999999999999998888999999999999999999999999 9999999998776655543
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=8.8e-07 Score=103.98 Aligned_cols=112 Identities=14% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEe-eccccceeEeeeccccccccCccccccccccc
Q 000450 13 TPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAML-CGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1496)
Q Consensus 13 ~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L-~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1496)
.++.++|..|.|...|..|++|+.|-+|.+||... ..++..+ .||...|-.-.| .
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~-----~~~~l~f~SGH~~NvfQaKF---i---------------- 194 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVS-----GSPKLSFESGHCNNVFQAKF---I---------------- 194 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhc-----cCcccccccccccchhhhhc---c----------------
Confidence 46778999999999999999999999999999974 3343333 478777755543 0
Q ss_pred ccccccccCCCCEEEEEeCCCeEEEEECC-CCeEEEeecCCCCCCCCcEEEEcCCCC--eEEEEccc
Q 000450 92 SNVMGKSSLDNGALISACTDGVLCVWSRS-SGHCRRRRKLPPWVGSPSVICTLPSNP--RYVCIGCC 155 (1496)
Q Consensus 92 ~~~~g~~s~d~~~LaSas~DG~l~VWdv~-~G~ci~~~~l~~~~g~~~~i~~~s~~~--~ll~~G~~ 155 (1496)
-+.+...+++.+.||.+++=.+. +|.|.....+-+. ..|..+.+.-|+. .++.+|.+
T Consensus 195 ------P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h-~g~vhklav~p~sp~~f~S~geD 254 (559)
T KOG1334|consen 195 ------PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH-EGPVHKLAVEPDSPKPFLSCGED 254 (559)
T ss_pred ------CCCCCcCceeccccCceeeeeeccccceecceecccc-cCccceeeecCCCCCcccccccc
Confidence 14566779999999999998875 5555544333322 2334444443332 35556654
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.49 E-value=4.1e-06 Score=94.35 Aligned_cols=175 Identities=12% Similarity=0.098 Sum_probs=120.2
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEE
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~ 564 (1496)
..+-+||-...++. .++. -...|.++. +.++++|+.- .+.|.||.+.. ..+.++
T Consensus 75 NkviIWDD~k~~~i----~el~-f~~~I~~V~------l~r~riVvvl-~~~I~VytF~~--------------n~k~l~ 128 (346)
T KOG2111|consen 75 NKVIIWDDLKERCI----IELS-FNSEIKAVK------LRRDRIVVVL-ENKIYVYTFPD--------------NPKLLH 128 (346)
T ss_pred ceEEEEecccCcEE----EEEE-eccceeeEE------EcCCeEEEEe-cCeEEEEEcCC--------------Chhhee
Confidence 45667885544332 2221 235677766 6666777765 56888866541 112222
Q ss_pred EE---ecCCccEEEEEEecCCCCcccCcCCCEEE-EEeCCCcEEEEECCCCce--EEEEcccCCCEEEEEECCCCCCCCC
Q 000450 565 YF---LGHTGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 565 ~l---~gH~~~V~~La~spd~~~~~~~~~~~~L~-SGs~DgtV~lWDl~tg~~--l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
.+ ...+| +.++ .|.. ...+|+ -|-.-|.|+|-|+..-+. ...+..|.+.|.+++++-+
T Consensus 129 ~~et~~NPkG-lC~~--~~~~-------~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~------ 192 (346)
T KOG2111|consen 129 VIETRSNPKG-LCSL--CPTS-------NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ------ 192 (346)
T ss_pred eeecccCCCc-eEee--cCCC-------CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC------
Confidence 22 11222 2222 2220 123333 344568899999986655 4778899999999999998
Q ss_pred CCEEEEEeCCCcE-EEEECCCCcEEEEecCC--CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 639 SDCFLSVGEDFSV-ALASLETLRVERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 639 g~~l~Sgs~DgsV-~lWdl~~~~~l~~~~gH--~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
|..+||+|..|++ ||||.++|..+..++.. .+.|.+++|||+..+|++++.- |+|+|+.++..
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK--------gTlHiF~l~~~ 258 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK--------GTLHIFSLRDT 258 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC--------CeEEEEEeecC
Confidence 9999999999975 99999999999998643 3479999999999999999888 99999998753
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=3.4e-06 Score=96.02 Aligned_cols=157 Identities=16% Similarity=0.221 Sum_probs=112.0
Q ss_pred ccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEecCCCCcccCcCCCEEEEEeC
Q 000450 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1496)
Q Consensus 523 f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~La~spd~~~~~~~~~~~~L~SGs~ 599 (1496)
|++. .++.+..|-.|++ ++. .+ ++...++. -...|+|++|-|. ....|+.|..
T Consensus 106 WhqH~~~fava~nddvVri--y~k-------------ss-t~pt~Lks~sQrnvtclawRPl--------saselavgCr 161 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRI--YDK-------------SS-TCPTKLKSVSQRNVTCLAWRPL--------SASELAVGCR 161 (445)
T ss_pred echhhhhhhhhccCcEEEE--ecc-------------CC-CCCceecchhhcceeEEEeccC--------Ccceeeeeec
Confidence 5554 5677888888888 441 11 22222322 2346999999997 2567777766
Q ss_pred CCcEEEEECCCC----ce----------EEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe-CCCcEEEEECCCCcEEEE
Q 000450 600 DCSIRIWDLGSG----NL----------ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETLRVERM 664 (1496)
Q Consensus 600 DgtV~lWDl~tg----~~----------l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs-~DgsV~lWdl~~~~~l~~ 664 (1496)
. -|++|..... .. +..-.+| .+|+++.|++| |..+++++ .|.+|.|||..++.++..
T Consensus 162 ~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d------gt~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 162 A-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED------GTILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred c-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC------CCEEeecccCcceEEEEcCCCCCcccc
Confidence 5 4999987531 11 1122345 58999999999 88888877 578999999999988766
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE-ECCCCeEEEEEeCCC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW-DVKTGARERVLRGTA 719 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW-Dl~tg~~~~~l~gh~ 719 (1496)
.+...+.+.-++||||+.+|+++.-| +..++| ..++...++-..|..
T Consensus 234 ~~~glgg~slLkwSPdgd~lfaAt~d--------avfrlw~e~q~wt~erw~lgsg 281 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDGDVLFAATCD--------AVFRLWQENQSWTKERWILGSG 281 (445)
T ss_pred cccCCCceeeEEEcCCCCEEEEeccc--------ceeeeehhcccceecceeccCC
Confidence 65566678899999999999999998 999999 445556666655544
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.45 E-value=9.7e-06 Score=89.59 Aligned_cols=136 Identities=13% Similarity=0.185 Sum_probs=87.6
Q ss_pred EEEEECC-CCceEEEEcc-cCCCEEEEEECCCCCCCCCCCEEEEE--eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000450 603 IRIWDLG-SGNLITVMHH-HVAPVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 603 V~lWDl~-tg~~l~~~~~-H~~~V~~l~~sPd~~~~~~g~~l~Sg--s~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~s 678 (1496)
..+|.++ .+.....+.. ..++|.+++|+|+ |+.|+.+ ..+..|.+||++ ++.+..+. ...+..|.|+
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~------g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws 109 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPN------GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS 109 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcC------CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC
Confidence 4444442 2233444433 4567999999999 7776544 467899999997 67777764 4567899999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCC
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 758 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~ 758 (1496)
|+|++|++++.+ +..|.|.+||+++.+.+.... |. ......+++ ....+++..+... ...|.
T Consensus 110 P~G~~l~~~g~~-----n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsP------dGr~~~ta~t~~r-----~~~dn 171 (194)
T PF08662_consen 110 PDGRFLVLAGFG-----NLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSP------DGRYLATATTSPR-----LRVDN 171 (194)
T ss_pred CCCCEEEEEEcc-----CCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcC------CCCEEEEEEeccc-----eeccc
Confidence 999999998754 222789999999888877764 22 233334542 1222222222111 12378
Q ss_pred cEEeecc
Q 000450 759 TFRQSQI 765 (1496)
Q Consensus 759 ~ir~W~l 765 (1496)
.+++|+.
T Consensus 172 g~~Iw~~ 178 (194)
T PF08662_consen 172 GFKIWSF 178 (194)
T ss_pred cEEEEEe
Confidence 8999985
No 219
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.43 E-value=2.7e-05 Score=89.43 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=92.3
Q ss_pred CCccEEEEEeeccccccCCEEEEE--EcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 508 KEKIVSSSMVISESFYAPYAIVYG--FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 508 h~~~Vts~~~~s~~~f~P~~lv~G--s~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
|...+.+..+...+. +++.- ...|+|.+ |+ ..+-+++..+..|.+.+-||+|+++
T Consensus 128 n~~gl~AlS~n~~n~----ylAyp~s~t~GdV~l--~d-------------~~nl~~v~~I~aH~~~lAalafs~~---- 184 (391)
T KOG2110|consen 128 NPKGLCALSPNNANC----YLAYPGSTTSGDVVL--FD-------------TINLQPVNTINAHKGPLAALAFSPD---- 184 (391)
T ss_pred CccceEeeccCCCCc----eEEecCCCCCceEEE--EE-------------cccceeeeEEEecCCceeEEEECCC----
Confidence 445566655444443 55543 23688888 33 3344678889999999999999997
Q ss_pred ccCcCCCEEEEEeCCCc-EEEEECCCCceEEEEcccCC--CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 586 KGWSFNEVLVSGSMDCS-IRIWDLGSGNLITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~Dgt-V~lWDl~tg~~l~~~~~H~~--~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
|.+||++|..|| |||+++.+|+.+..|+--.. .|.+++|+|+ +++|++.|.-++|.++-++.
T Consensus 185 -----G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d------s~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 185 -----GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD------SQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -----CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC------CCeEEEecCCCeEEEEEecc
Confidence 999999999997 56999999999999876543 4789999999 89999999999999998864
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=6.4e-06 Score=102.29 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=110.2
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcC-CcEEEEEecccccCCCCCCccccCCcc--
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS-GEIEVIQFDLFERHNSPGASLKVNSHV-- 561 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~d-G~I~V~~~~~l~~~d~~~~~~d~~s~~-- 561 (1496)
+.+.+||..... .+.+..|...+.+..+.++.. .+++.+.+ +.-.|+.|+ ..+++
T Consensus 184 ~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~----~la~~s~~~~~~~i~i~d-------------l~tg~~~ 241 (429)
T PRK01742 184 YEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGS----KLAYVSFENKKSQLVVHD-------------LRSGARK 241 (429)
T ss_pred EEEEEECCCCCC-----ceEeccCCCccccceEcCCCC----EEEEEEecCCCcEEEEEe-------------CCCCceE
Confidence 466777764321 233455666777777444443 77776643 333333354 22232
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEE-eCCCcEEEE--ECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG-SMDCSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SG-s~DgtV~lW--Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
.+..+.+|. ..++|+|| ++.|+.+ +.|+.+.|| |+.+++ +..+..+...+....|+||
T Consensus 242 ~l~~~~g~~---~~~~wSPD---------G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD------ 302 (429)
T PRK01742 242 VVASFRGHN---GAPAFSPD---------GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD------ 302 (429)
T ss_pred EEecCCCcc---CceeECCC---------CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC------
Confidence 233344443 46799998 7766655 568876655 666665 4556677777889999999
Q ss_pred CCEEEEEe-CCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 639 SDCFLSVG-EDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 639 g~~l~Sgs-~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
|+.++.++ .++...||+++.. .....+ ++.. ....|+|||++|+..+.+ + +.+||+.+|+...
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~--------~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD--------N-VVKQDLTSGSTEV 367 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC--------C-EEEEECCCCCeEE
Confidence 77666554 5788889887532 222223 3433 457899999999887765 4 6669999987653
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.41 E-value=0.00015 Score=88.03 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=74.7
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE----eCCCcEEEEECCCCcEEEEecCC-CCCcEEE
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV----GEDFSVALASLETLRVERMFPGH-PNYPAKV 675 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg----s~DgsV~lWdl~~~~~l~~~~gH-~~~V~~V 675 (1496)
..+.+||..+.+.+.++....++ .-+..+|+ ++++... ....+|.++|.++.+.+..+... ...+..+
T Consensus 249 ~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~------s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 249 DPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPD------SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp -TTT-STTTBTSEEEEEE-SSSS---EE--TT-------SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred CccccchhhcCeEEEEEECCCCc-ceeecCCC------CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 35668999999999999988888 77888998 7777776 45689999999999888887532 2358899
Q ss_pred EEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 676 ~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
.|++||+++.++..+ .++.|.|||.+|.+++..+.
T Consensus 322 ef~~dG~~v~vS~~~------~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWD------GNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE-TTSSEEEEEEE--------TTEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEEec------CCCEEEEEECCCcEEEEEEE
Confidence 999999999887776 22589999999999998887
No 222
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.40 E-value=6.8e-06 Score=105.39 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=115.1
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-------ceEEEEcccCCCEEEE
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQI 627 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-------~~l~~~~~H~~~V~~l 627 (1496)
|+. .|..+..+..|...|..++.++.+ +.+++|||.||+|++||+..- +...++....+++.++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~--------~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEH--------TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCC--------CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEE
Confidence 444 467888899999999999998863 689999999999999998742 2334444456788999
Q ss_pred EECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-------------------cEEEEe-----------------------
Q 000450 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETL-------------------RVERMF----------------------- 665 (1496)
Q Consensus 628 ~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-------------------~~l~~~----------------------- 665 (1496)
.+.+. ++.+|.++.||.|++.+++-. ..+.+.
T Consensus 1105 t~~~~------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1105 TMCGN------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred EeccC------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence 98887 899999999999999987641 111000
Q ss_pred -------------cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCCceeeeeec
Q 000450 666 -------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMFDHFCK 729 (1496)
Q Consensus 666 -------------~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~-gh~a~vi~~~~~~ 729 (1496)
....+.|++++.+|.+.+++.|..- |.+-+||++-+.++.... ++.+.+..+..|+
T Consensus 1179 D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~--------G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR--------GQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred cchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC--------ceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 0123568999999999999999988 999999999998876653 4445665555553
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=1.5e-05 Score=92.00 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=122.1
Q ss_pred ccCCEEEEEEcC--CcEEEEEecccccCCCCCCccccCCcceEEEEecCC--ccEEEEEEecCCCCcccCcCCCEEEEEe
Q 000450 523 YAPYAIVYGFFS--GEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT--GAVLCLAAHRMVGTAKGWSFNEVLVSGS 598 (1496)
Q Consensus 523 f~P~~lv~Gs~d--G~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~--~~V~~La~spd~~~~~~~~~~~~L~SGs 598 (1496)
-+|+.+++|+.. ..++||+... ..+.|.....+. -.| +=. -.++.+.|-+.. ....|+++.
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~------~~qiw~aKNvpn-D~L-~LrVPvW~tdi~Fl~g~-------~~~~fat~T 223 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQ------SKQIWSAKNVPN-DRL-GLRVPVWITDIRFLEGS-------PNYKFATIT 223 (412)
T ss_pred CCCceEecCchhcccceeeeeccc------ceeeeeccCCCC-ccc-cceeeeeeccceecCCC-------CCceEEEEe
Confidence 356678888887 6677743321 112232211100 000 011 134677786641 257899999
Q ss_pred CCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-ecCCCCCcEEEE
Q 000450 599 MDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-FPGHPNYPAKVV 676 (1496)
Q Consensus 599 ~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~-~~gH~~~V~~V~ 676 (1496)
.-+.|++||.+.++ ++..|..-..+|.++...|. ++.+.+|..-+.+..+|++.++.+.. +.|-.+.|.+|.
T Consensus 224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~------gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih 297 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS------GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH 297 (412)
T ss_pred cceeEEEecCcccCcceeEeccccCcceeeeecCC------CcEEEEecccchhheecccCceeeccccCCccCCcceEE
Confidence 99999999999775 66778777889999999998 89999999999999999999998866 888899999999
Q ss_pred EcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 677 WDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 677 ~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
.+|..++|++++-| ..|||+|++|.+++.
T Consensus 298 ~hp~~~~las~GLD--------RyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 298 CHPTHPVLASCGLD--------RYVRIHDIKTRKLLH 326 (412)
T ss_pred EcCCCceEEeeccc--------eeEEEeecccchhhh
Confidence 99999999999999 999999999966653
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=6.3e-06 Score=98.47 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=116.0
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc------cCC-----CEEE
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH------HVA-----PVRQ 626 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~------H~~-----~V~~ 626 (1496)
+.|..+..|.-..+.++++..++. ..+|+.|+.||.|..||.++.....++.. |.+ .|++
T Consensus 163 EqGrfL~P~~~~~~~lN~v~in~~---------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTa 233 (703)
T KOG2321|consen 163 EQGRFLNPFETDSGELNVVSINEE---------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTA 233 (703)
T ss_pred cccccccccccccccceeeeecCc---------cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceE
Confidence 345566666666789999999997 68999999999999999998765554432 333 3999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC--CCcEEEEEcCC--CCEEEEEEcCCCCCCCCCCEEE
Q 000450 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP--NYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVLF 702 (1496)
Q Consensus 627 l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~--~~V~~V~~spd--g~~L~tgs~D~sg~~D~dg~V~ 702 (1496)
+.|+-+ |-.++.|..+|.|.|||++..+++..- .|. -+|..+.|.+. +..+++... ..++
T Consensus 234 l~F~d~------gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~Dk---------~~~k 297 (703)
T KOG2321|consen 234 LKFRDD------GLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVSMDK---------RILK 297 (703)
T ss_pred EEecCC------ceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEecch---------HHhh
Confidence 999987 789999999999999999998886553 354 47899999765 445555433 6899
Q ss_pred EEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCc
Q 000450 703 IWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 745 (1496)
Q Consensus 703 VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~ 745 (1496)
|||-.+|+....+..... ...+| +...+|.++.++.
T Consensus 298 iWd~~~Gk~~asiEpt~~---lND~C----~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 298 IWDECTGKPMASIEPTSD---LNDFC----FVPGSGMFFTANE 333 (703)
T ss_pred hcccccCCceeeccccCC---cCcee----eecCCceEEEecC
Confidence 999999998887765443 23355 2233666655554
No 225
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.30 E-value=8.2e-06 Score=91.05 Aligned_cols=148 Identities=14% Similarity=0.042 Sum_probs=109.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++++-.+|++.+..... .. -+..+.+++|.-..+...|+.. ..+++.+||.|+.+..|
T Consensus 135 ~i~vs~s~G~~~~v~~t~----------~~---le~vq~wk~He~E~Wta~f~~~--------~pnlvytGgDD~~l~~~ 193 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETE----------MV---LEKVQTWKVHEFEAWTAKFSDK--------EPNLVYTGGDDGSLSCW 193 (339)
T ss_pred eEEEEcCCCcEEEEecce----------ee---eeecccccccceeeeeeecccC--------CCceEEecCCCceEEEE
Confidence 677777888888543321 01 1334578899999999999765 37899999999999999
Q ss_pred ECC-CCceEEE-EcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCC-
Q 000450 607 DLG-SGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRG- 682 (1496)
Q Consensus 607 Dl~-tg~~l~~-~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~~~~gH~~~V~~V~~spdg~- 682 (1496)
|++ .++.+.. -+.|+..|.++.-+|.. +.++++|+.|..|++||.++ ++++..-+ -.+.|+.++++|.-.
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFH 267 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhh
Confidence 999 4555533 66789999999888763 78999999999999999985 56665543 236799999999543
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
.|+.+|.- .-.+|-++..+
T Consensus 268 ~lL~~CMh--------~G~ki~~~~~~ 286 (339)
T KOG0280|consen 268 RLLAACMH--------NGAKILDSSDK 286 (339)
T ss_pred HHHHHHHh--------cCceEEEeccc
Confidence 44555654 44677776554
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.29 E-value=4.4e-05 Score=86.14 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=74.2
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCC--CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~D--gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg 649 (1496)
.+.-++|++| ..++++-... ..+-+||+...++...+ ....+|+...|.|. ...++.+....
T Consensus 320 g~g~lafs~D---------s~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~------~prL~vctg~s 383 (447)
T KOG4497|consen 320 GAGKLAFSCD---------STYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPG------RPRLVVCTGKS 383 (447)
T ss_pred ccceeeecCC---------ceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCC------CceEEEEcCCc
Confidence 4677899997 6777776432 46789999876654444 45678999999997 34444444445
Q ss_pred cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 650 SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 650 sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
.+.+|.....+++.. ++....|.+++|.-+|.+++-.+.|
T Consensus 384 rLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 384 RLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred eEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCC
Confidence 588898776555443 5566789999999999999888877
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.29 E-value=4.3e-05 Score=86.40 Aligned_cols=104 Identities=19% Similarity=0.381 Sum_probs=83.5
Q ss_pred EEEE-EEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCc-EE
Q 000450 527 AIVY-GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS-IR 604 (1496)
Q Consensus 527 ~lv~-Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dgt-V~ 604 (1496)
.||+ |..-|.|.|..+.. ... + +-..+..|...|.|++.+.+ |.++||+|..|| ||
T Consensus 150 ~LafPg~k~GqvQi~dL~~-----------~~~-~-~p~~I~AH~s~Iacv~Ln~~---------Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLAS-----------TKP-N-APSIINAHDSDIACVALNLQ---------GTLVATASTKGTLIR 207 (346)
T ss_pred EEEcCCCccceEEEEEhhh-----------cCc-C-CceEEEcccCceeEEEEcCC---------ccEEEEeccCcEEEE
Confidence 3444 45578999965541 111 1 23567899999999999886 899999999997 67
Q ss_pred EEECCCCceEEEEccc--CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 605 IWDLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 605 lWDl~tg~~l~~~~~H--~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
|||..+|+.+..++-- ...|.+++|+|+ ..++|..|.-|++.++.++.
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~------~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSPN------SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCCC------ccEEEEEcCCCeEEEEEeec
Confidence 9999999999988753 346999999999 89999999999999999875
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=8.3e-05 Score=92.42 Aligned_cols=163 Identities=12% Similarity=0.042 Sum_probs=104.7
Q ss_pred ccCC--EEEEE-EcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC
Q 000450 523 YAPY--AIVYG-FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1496)
Q Consensus 523 f~P~--~lv~G-s~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~ 599 (1496)
|+|+ .+++. ..+|...|+.|+ .++++.. .+..+...+....|+|| ++.|+..+.
T Consensus 250 ~SPDG~~La~~~~~~g~~~I~~~d-------------~~tg~~~-~lt~~~~~~~~~~wSPD---------G~~I~f~s~ 306 (429)
T PRK03629 250 FSPDGSKLAFALSKTGSLNLYVMD-------------LASGQIR-QVTDGRSNNTEPTWFPD---------SQNLAYTSD 306 (429)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEE-------------CCCCCEE-EccCCCCCcCceEECCC---------CCEEEEEeC
Confidence 5555 56654 456765565555 2333433 34444456788999998 777766554
Q ss_pred C-Cc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC---CcEEEEECCCCcEEEEecCCCCCcE
Q 000450 600 D-CS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 600 D-gt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D---gsV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
+ +. |.++|+.+++. ..+..+........|+|+ |+.++..+.+ ..|.+||+.+++....... ....
T Consensus 307 ~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpD------G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~ 377 (429)
T PRK03629 307 QAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD------GKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDE 377 (429)
T ss_pred CCCCceEEEEECCCCCe-EEeecCCCCccCEEECCC------CCEEEEEEccCCCceEEEEECCCCCeEEeCCC--CCCC
Confidence 3 44 44557766654 344444555677889999 8888776543 4588999988875433222 2234
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCce
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSM 723 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi 723 (1496)
...|+|||++|+..+.+ + . ...+++|++ +|...+.+.+|...+.
T Consensus 378 ~p~~SpDG~~i~~~s~~--~--~-~~~l~~~~~-~G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQ--G--M-GSVLNLVST-DGRFKARLPATDGQVK 421 (429)
T ss_pred CceECCCCCEEEEEEcC--C--C-ceEEEEEEC-CCCCeEECccCCCCcC
Confidence 67899999999998877 1 1 145888888 5666677777765443
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.20 E-value=2.8e-05 Score=88.45 Aligned_cols=193 Identities=18% Similarity=0.136 Sum_probs=134.0
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
...+.+-++++|-..+....-.. ....-+..+++..+..+.. +|++|..+|++.-+.... +.+
T Consensus 40 ~~~s~drtvrv~lkrds~q~wps--I~~~mP~~~~~~~y~~e~~----~L~vg~~ngtvtefs~se-----------dfn 102 (404)
T KOG1409|consen 40 ISVSEDRTVRVWLKRDSGQYWPS--IYHYMPSPCSAMEYVSESR----RLYVGQDNGTVTEFALSE-----------DFN 102 (404)
T ss_pred EEccccceeeeEEeccccccCch--hhhhCCCCceEeeeeccce----EEEEEEecceEEEEEhhh-----------hhh
Confidence 34455677888876654321111 1122245677777655555 899999999998643321 122
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---------------------------
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--------------------------- 611 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg--------------------------- 611 (1496)
.....+....|..+|..+.|+.. .+++++.+.|..+..--.+.+
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~---------~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLT---------HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCC---------ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 22334555668888888877654 567777777755543322221
Q ss_pred --------------ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEEE
Q 000450 612 --------------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVV 676 (1496)
Q Consensus 612 --------------~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~-l~~~~gH~~~V~~V~ 676 (1496)
.++.++.+|.++++++.|.|. ...+.||+.|..|.+||+-.++- .....+|...|..+.
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 245678899999999999997 78999999999999999965543 356678999998888
Q ss_pred EcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 677 WDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 677 ~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
.-+.-+.|++++.| |.|-+||+...+.
T Consensus 248 ~~~~t~~l~S~~ed--------g~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 248 YAQHTRQLISCGED--------GGIVVWNMNVKRV 274 (404)
T ss_pred hhhhheeeeeccCC--------CeEEEEeccceee
Confidence 87778889988888 9999999976443
No 230
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.15 E-value=0.0001 Score=88.18 Aligned_cols=116 Identities=13% Similarity=0.208 Sum_probs=79.2
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeC-CCcEEEEECCC--Cc--eEEEEccc------CCCEEEEEECCCCCCCCCCCE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGS--GN--LITVMHHH------VAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~-DgtV~lWDl~t--g~--~l~~~~~H------~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
...++|+|+ +++++++.. +++|.+||+.. ++ .+..+..+ ......+.++|+ +++
T Consensus 177 p~~~~~~pd---------g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd------g~~ 241 (330)
T PRK11028 177 PRHMVFHPN---------QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD------GRH 241 (330)
T ss_pred CceEEECCC---------CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC------CCE
Confidence 457899997 787777665 89999999973 33 23333221 112335889998 787
Q ss_pred EEEEe-CCCcEEEEECCCCc----EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC--CCeE
Q 000450 642 FLSVG-EDFSVALASLETLR----VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK--TGAR 711 (1496)
Q Consensus 642 l~Sgs-~DgsV~lWdl~~~~----~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~--tg~~ 711 (1496)
++++. .+++|.+|+++... .+..... ...+..+.|+|||++|++++.. +++|.+|++. +|.+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~-------~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQK-------SHHISVYEIDGETGLL 310 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEcc-------CCcEEEEEEcCCCCcE
Confidence 77764 47899999996432 2222221 1246689999999999998863 2899999774 5554
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.13 E-value=0.00012 Score=91.25 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=105.5
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcC-CcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFS-GEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~d-G~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
+..+...+.+..+.++.. .+++.+.+ +.-.|+.|+ ..+++. ..+..+.+...+..|+||
T Consensus 199 lt~~~~~v~~p~wSpDg~----~la~~s~~~~~~~l~~~d-------------l~~g~~-~~l~~~~g~~~~~~~SpD-- 258 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGK----KLAYVSFERGRSAIYVQD-------------LATGQR-ELVASFRGINGAPSFSPD-- 258 (433)
T ss_pred eecCCCccccccCCCCCC----EEEEEecCCCCcEEEEEE-------------CCCCCE-EEeccCCCCccCceECCC--
Confidence 344555666666333333 67776643 333343344 222332 233344445567899998
Q ss_pred CcccCcCCC-EEEEEeCCC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCc--EEEEECC
Q 000450 584 TAKGWSFNE-VLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFS--VALASLE 657 (1496)
Q Consensus 584 ~~~~~~~~~-~L~SGs~Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-Dgs--V~lWdl~ 657 (1496)
++ ++++.+.++ .|.+||+.+++. ..+..+........|+|| |+.++.++. ++. |.++|+.
T Consensus 259 -------G~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD------G~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 259 -------GRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD------GKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred -------CCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECCCCCceEEEEECC
Confidence 55 445666665 599999998875 445556555678899999 887776664 444 6666777
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 658 ~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
+++..+.. .+.......+|+|||++|+..+.+ ++...|++||+.+++..
T Consensus 325 ~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~-----~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 325 GGSAERLT-FQGNYNARASVSPDGKKIAMVHGS-----GGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCeEEee-cCCCCccCEEECCCCCEEEEEECC-----CCceeEEEEECCCCCeE
Confidence 77654332 233445578999999999887654 11247999999888764
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=7.5e-06 Score=96.41 Aligned_cols=230 Identities=18% Similarity=0.094 Sum_probs=144.3
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC-EEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~-~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++.++.+..+-+||.....+. ..-..+|...|....|++... + .++..+.||.+++.... .
T Consensus 157 l~SgSDD~~vv~WdW~~~~~~---l~f~SGH~~NvfQaKFiP~s~---d~ti~~~s~dgqvr~s~i~--~---------- 218 (559)
T KOG1334|consen 157 LASGSDDLQVVVWDWVSGSPK---LSFESGHCNNVFQAKFIPFSG---DRTIVTSSRDGQVRVSEIL--E---------- 218 (559)
T ss_pred eeccCccceEEeehhhccCcc---cccccccccchhhhhccCCCC---CcCceeccccCceeeeeec--c----------
Confidence 555666778889998765442 223467877777766444222 2 68888999999984332 1
Q ss_pred cCCcce--EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc---ccCC---CEEEEE
Q 000450 557 VNSHVS--RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVA---PVRQII 628 (1496)
Q Consensus 557 ~~s~~~--~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~---~H~~---~V~~l~ 628 (1496)
++.+ ...+..|.++|..++.-|+ ....|.|++.|+.|.-.|++.+.+-..+. .+.. ....++
T Consensus 219 --t~~~e~t~rl~~h~g~vhklav~p~--------sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 219 --TGYVENTKRLAPHEGPVHKLAVEPD--------SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred --ccceecceecccccCccceeeecCC--------CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 1222 2446679999999999987 26789999999999999998765433222 2222 345666
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-------------------------------------------------
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETL------------------------------------------------- 659 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~------------------------------------------------- 659 (1496)
..|.. ...+++++.|..+++||.+..
T Consensus 289 ~~P~n-----t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 289 VDPRN-----TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred cCCCC-----ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 66653 346666666666666665421
Q ss_pred -----------------cEEEE-ecCCCC--CcEEEEE-cCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 660 -----------------RVERM-FPGHPN--YPAKVVW-DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 660 -----------------~~l~~-~~gH~~--~V~~V~~-spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
..+.. +.||.+ .|..|-| -|...|+++|+.= |.|.||+-.+++.++.+.|.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC--------GhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC--------GHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc--------ceEEEEecchhHHHHHhhcc
Confidence 11111 445544 3444443 4556677666544 99999999999999999987
Q ss_pred CCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 719 ~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
...+-++.-.+.+. ...++.+ |.-||+|.-
T Consensus 436 r~VVNCLEpHP~~P------------vLAsSGi-----d~DVKIWTP 465 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLP------------VLASSGI-----DHDVKIWTP 465 (559)
T ss_pred cceEeccCCCCCCc------------hhhccCC-----ccceeeecC
Confidence 75333332222211 1223334 778999963
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.00018 Score=89.53 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=100.3
Q ss_pred ccCC--EEE-EEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-
Q 000450 523 YAPY--AIV-YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS- 598 (1496)
Q Consensus 523 f~P~--~lv-~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs- 598 (1496)
|+|+ .++ +.+.+|.-.|+.|+ ..+++ ...+..|.+......|+|| ++.|+..+
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d-------------~~~g~-~~~lt~~~~~~~~~~~spD---------G~~l~f~sd 311 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMD-------------LGSRQ-LTRLTNHFGIDTEPTWAPD---------GKSIYFTSD 311 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEE-------------CCCCC-eEECccCCCCccceEECCC---------CCEEEEEEC
Confidence 5554 554 44566765554455 22333 2345556556677899997 67666555
Q ss_pred CCCc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcE
Q 000450 599 MDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 599 ~Dgt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg---sV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
.++. |.++|+.+++... +..+........|+|+ |+.++..+.++ .|.+||+.+++..... +.....
T Consensus 312 ~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpD------G~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~ 382 (433)
T PRK04922 312 RGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPD------GKKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDE 382 (433)
T ss_pred CCCCceEEEEECCCCCeEE-eecCCCCccCEEECCC------CCEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCC
Confidence 4444 6677777776433 3333344557899999 88877665433 6999999888765332 222345
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
...|+|||++|+..+.+ .+.+.|+++++. |...+.+..+.
T Consensus 383 ~p~~spdG~~i~~~s~~-----~g~~~L~~~~~~-g~~~~~l~~~~ 422 (433)
T PRK04922 383 SPSFAPNGSMVLYATRE-----GGRGVLAAVSTD-GRVRQRLVSAD 422 (433)
T ss_pred CceECCCCCEEEEEEec-----CCceEEEEEECC-CCceEEcccCC
Confidence 67999999998887765 122679999985 44455555443
No 234
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.10 E-value=3.5e-06 Score=110.86 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=130.9
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+++.++.++.|+.....+.. .....+ +..|+.+.+...+. ....+-.||.+.+ |+ .
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~--~~rt~g-~s~vtr~~f~~qGn----k~~i~d~dg~l~l--~q-------------~ 2280 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVV--CFRTAG-NSRVTRSRFNHQGN----KFGIVDGDGDLSL--WQ-------------A 2280 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEE--EeeccC-cchhhhhhhcccCC----ceeeeccCCceee--cc-------------c
Confidence 4566778888888876543321 111122 26677776555554 6777777888887 55 1
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEE---eCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG---SMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SG---s~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sP 631 (1496)
+.++....+.|......+.|- +..++++ +.++.+.+||..-. .+++ +.|.+.++++++-|
T Consensus 2281 -~pk~~~s~qchnk~~~Df~Fi-----------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2281 -SPKPYTSWQCHNKALSDFRFI-----------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred -CCcceeccccCCccccceeee-----------ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence 135666677888888888875 3445555 36789999996532 2445 78999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
. .+.|+|||.+|.|++||++..+.++.++. +. ...++++|+.. |.++||++....+
T Consensus 2347 ~------~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~--------g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2347 K------HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSE--------GNIKIWRLSEFGL 2402 (2439)
T ss_pred c------ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcc--------cceEEEEccccch
Confidence 8 89999999999999999998887777653 55 56789998888 9999999988777
Q ss_pred EEEEeC
Q 000450 712 ERVLRG 717 (1496)
Q Consensus 712 ~~~l~g 717 (1496)
+.++.+
T Consensus 2403 l~~~p~ 2408 (2439)
T KOG1064|consen 2403 LHTFPS 2408 (2439)
T ss_pred hhcCch
Confidence 776654
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00016 Score=90.02 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=96.5
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC---CCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~---DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
..+.+..|...+.+..|+|| ++.|+..+. +..|.+||+.+++.. .+..+.+.+....|+||
T Consensus 193 ~~~~lt~~~~~v~~p~wSpD---------G~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD------ 256 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPN---------RQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD------ 256 (435)
T ss_pred CcEEEecCCCCeEeeEECCC---------CCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC------
Confidence 34556778889999999998 777776653 468999999988753 45556677888999999
Q ss_pred CCEE-EEEeCCCc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 639 SDCF-LSVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 639 g~~l-~Sgs~Dgs--V~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|+.+ ++.+.|+. |.+||+.+++.. .+..+........|+|||++|+..+.. +++..|++||+.+++..+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~-----~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDR-----SGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECC-----CCCCeEEEEECCCCCeEEe
Confidence 7655 46666665 777798887664 455566667789999999999877643 1225799999987765443
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00026 Score=87.97 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=103.4
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~-dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
..+...+.+..+.++.. .+++.+. ++.-.|+.|+ ..+++.. .+....+.+.+.+|+||
T Consensus 192 ~~~~~~v~~p~wSPDG~----~la~~s~~~~~~~I~~~d-------------l~~g~~~-~l~~~~g~~~~~~~SPD--- 250 (427)
T PRK02889 192 LSSPEPIISPAWSPDGT----KLAYVSFESKKPVVYVHD-------------LATGRRR-VVANFKGSNSAPAWSPD--- 250 (427)
T ss_pred ccCCCCcccceEcCCCC----EEEEEEccCCCcEEEEEE-------------CCCCCEE-EeecCCCCccceEECCC---
Confidence 34556666666333333 6777664 3433444455 3334332 23334455678899998
Q ss_pred cccCcCCCEE-EEEeCCCcEEEEEC--CCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCcEEEEEC--CC
Q 000450 585 AKGWSFNEVL-VSGSMDCSIRIWDL--GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASL--ET 658 (1496)
Q Consensus 585 ~~~~~~~~~L-~SGs~DgtV~lWDl--~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-DgsV~lWdl--~~ 658 (1496)
++.| ++.+.|+...+|.+ ..+. +..+..+.+.+....|+|| |+.++..+. ++...+|.+ .+
T Consensus 251 ------G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD------G~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 251 ------GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD------GRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred ------CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC------CCEEEEEecCCCCcEEEEEECCC
Confidence 5555 56778887666654 4444 5566666666678889999 887776554 456666654 45
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
++..+.. .+........|+|||++|+..+.+ +++..|++||+.+++...
T Consensus 318 g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~-----~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 318 GAAQRVT-FTGSYNTSPRISPDGKLLAYISRV-----GGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CceEEEe-cCCCCcCceEECCCCCEEEEEEcc-----CCcEEEEEEECCCCCeEE
Confidence 5443322 222334567899999999877655 111479999999887543
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=0.00013 Score=87.52 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=88.8
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe------cC
Q 000450 594 LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF------PG 667 (1496)
Q Consensus 594 L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~------~g 667 (1496)
|..++....|.=.+++.|.-+..|....+.+++|.+++. ..+|++|+.||.|-.||.++...+.++ ..
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCc------cceEEecccCceEEEecchhhhhheeeecccccCC
Confidence 333444456888999999999999999999999999998 789999999999999999876554443 23
Q ss_pred CCC-----CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 668 HPN-----YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 668 H~~-----~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|.+ .|+++.|+.+|-.+++|..+ |.|+|||+++.+.+.+
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~--------G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTST--------GSVLIYDLRASKPLLV 265 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccC--------CcEEEEEcccCCceee
Confidence 443 48999999999999999998 9999999999887654
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.00024 Score=88.62 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=110.0
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~-dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
+..|...+.+..+.++.. .|++.+. +|.-.|+.|+ ..+++. ..+..+.+.+.+.+|+||
T Consensus 197 lt~~~~~v~~p~wSpDG~----~lay~s~~~g~~~i~~~d-------------l~~g~~-~~l~~~~g~~~~~~~SPD-- 256 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQ----EITYMSYANGRPRVYLLD-------------LETGQR-ELVGNFPGMTFAPRFSPD-- 256 (435)
T ss_pred EecCCCCeEeeEECCCCC----EEEEEEecCCCCEEEEEE-------------CCCCcE-EEeecCCCcccCcEECCC--
Confidence 455666777777444443 7777653 3444444455 333333 345566777888999998
Q ss_pred CcccCcCCCE-EEEEeCCCc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-C--CcEEEEECC
Q 000450 584 TAKGWSFNEV-LVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-D--FSVALASLE 657 (1496)
Q Consensus 584 ~~~~~~~~~~-L~SGs~Dgt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-D--gsV~lWdl~ 657 (1496)
++. +++.+.|+. |.+||+.+++. ..+..+.+......|+|| |+.++..+. + ..|.+||+.
T Consensus 257 -------G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD------G~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 257 -------GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD------GSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred -------CCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC------CCEEEEEECCCCCCeEEEEECC
Confidence 554 457676665 77789987765 456666666778899999 887776663 3 368888987
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 658 ~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+++..+.. .+...+....|+|||++|+....+ .++..|++||+.++.
T Consensus 323 g~~~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~-----~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 323 GSNPRRIS-FGGGRYSTPVWSPRGDLIAFTKQG-----GGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCeEEee-cCCCcccCeEECCCCCEEEEEEcC-----CCceEEEEEECCCCc
Confidence 76654433 334556678999999999887654 112479999986654
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.0003 Score=87.44 Aligned_cols=167 Identities=10% Similarity=0.031 Sum_probs=102.6
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEE-cCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs-~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
..+...+.+..+.++.. .+++.+ .+|.-.++.|+ ..+++.. .+....+.+..+.|+||
T Consensus 195 t~~~~~~~~p~wSPDG~----~la~~s~~~g~~~i~i~d-------------l~~G~~~-~l~~~~~~~~~~~~SPD--- 253 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGS----KLAYVTFESGRSALVIQT-------------LANGAVR-QVASFPRHNGAPAFSPD--- 253 (429)
T ss_pred ecCCCceeeeEEcCCCC----EEEEEEecCCCcEEEEEE-------------CCCCCeE-EccCCCCCcCCeEECCC---
Confidence 33455666766444443 676654 33443443344 2223322 22222233456899998
Q ss_pred cccCcCCCEEE-EEeCCC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC-CcEEE--EECCC
Q 000450 585 AKGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED-FSVAL--ASLET 658 (1496)
Q Consensus 585 ~~~~~~~~~L~-SGs~Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D-gsV~l--Wdl~~ 658 (1496)
++.|+ +.+.++ .|.+||+.+++... +..+...+....|+|+ |+.|+.++.+ +...| +|+.+
T Consensus 254 ------G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD------G~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 254 ------GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD------SQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred ------CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC------CCEEEEEeCCCCCceEEEEECCC
Confidence 66555 445455 58899999887654 4444556788999999 8888777654 44444 46776
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
++.. .+..+........|+|||++|+..+.+ ++...|++||+.+++..
T Consensus 321 g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-----~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 321 GAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-----GGQQHIAKQDLATGGVQ 368 (429)
T ss_pred CCeE-EeecCCCCccCEEECCCCCEEEEEEcc-----CCCceEEEEECCCCCeE
Confidence 6553 333344456678999999999887654 12257999999988753
No 240
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.07 E-value=0.00012 Score=87.72 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=79.7
Q ss_pred cEEEEEEecCCCCcccCcCCCEE-EEEeCCCcEEEEECCCCceEE-------EEcccCCCEEEEEECCCCCCCCCCCEEE
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSGNLIT-------VMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L-~SGs~DgtV~lWDl~tg~~l~-------~~~~H~~~V~~l~~sPd~~~~~~g~~l~ 643 (1496)
...+++++|+ ++++ ++...+++|.+||+.+...+. .... ......+.|+|+ +++++
T Consensus 127 ~~~~~~~~p~---------g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pd------g~~ly 190 (330)
T PRK11028 127 GCHSANIDPD---------NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPN------QQYAY 190 (330)
T ss_pred cccEeEeCCC---------CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCC------CCEEE
Confidence 3567788997 5555 666677999999998633221 1111 234578999999 88887
Q ss_pred EEeC-CCcEEEEECCC--C--cEEEEecCC------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 644 SVGE-DFSVALASLET--L--RVERMFPGH------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 644 Sgs~-DgsV~lWdl~~--~--~~l~~~~gH------~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
++.. +++|.+|+++. + +.+..+..+ ......+.++|+++++++++.. +++|.+|++.+.
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-------~~~I~v~~i~~~ 260 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-------ASLISVFSVSED 260 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-------CCeEEEEEEeCC
Confidence 7766 99999999973 3 334443322 1234468999999999998763 279999999653
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.04 E-value=2.8e-05 Score=88.38 Aligned_cols=102 Identities=26% Similarity=0.441 Sum_probs=81.7
Q ss_pred EEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEEC
Q 000450 529 VYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDL 608 (1496)
Q Consensus 529 v~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl 608 (1496)
..|-..|.|.+.+.. ...-.++.++.+|.+.++++.|.+. ..+|.||..|..|.+||+
T Consensus 169 fvGd~~gqvt~lr~~-------------~~~~~~i~~~~~h~~~~~~l~Wd~~---------~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLE-------------QNGCQLITTFNGHTGEVTCLKWDPG---------QRLLFSGASDHSVIMWDI 226 (404)
T ss_pred EecccccceEEEEEe-------------ecCCceEEEEcCcccceEEEEEcCC---------CcEEEeccccCceEEEec
Confidence 345556777764443 2233567889999999999999986 789999999999999999
Q ss_pred CCCc-eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 609 GSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 609 ~tg~-~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
--++ ....+.+|.+.|..+...+. -+.+.|++.|+.|.+||.+.
T Consensus 227 gg~~g~~~el~gh~~kV~~l~~~~~------t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 227 GGRKGTAYELQGHNDKVQALSYAQH------TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cCCcceeeeeccchhhhhhhhhhhh------heeeeeccCCCeEEEEeccc
Confidence 6544 34677889999998887766 67899999999999999863
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.0056 Score=74.32 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=91.8
Q ss_pred CccEEEEEEecCCCCcccCcCCCE--EEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEV--LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~--L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~ 647 (1496)
.++|.++.|+|+ ++- ++-|-+--+|.++|++ ++++..| -.++-+++.|+|. |++++-+|=
T Consensus 270 ~GPVhdv~W~~s---------~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~------g~ii~lAGF 331 (566)
T KOG2315|consen 270 EGPVHDVTWSPS---------GREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH------GNIILLAGF 331 (566)
T ss_pred CCCceEEEECCC---------CCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC------CCEEEEeec
Confidence 689999999997 443 3445677899999985 6777666 3678899999999 898887764
Q ss_pred ---CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 648 ---DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 648 ---DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
-|.+-+||+.+.+++..+..- .-+-+.|+|||.+++|+..- .--.-|+.++||+. +|.++..
T Consensus 332 GNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTa--PRlrvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTA--PRLRVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred CCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEecc--ccEEecCCeEEEEe-cCceeeh
Confidence 489999999998888877643 34568999999999988741 11112278999997 6666544
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.00024 Score=88.35 Aligned_cols=160 Identities=11% Similarity=0.040 Sum_probs=101.8
Q ss_pred ccCC--EEEE-EEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-
Q 000450 523 YAPY--AIVY-GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS- 598 (1496)
Q Consensus 523 f~P~--~lv~-Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs- 598 (1496)
|+|+ .++. .+.+|...||.++. .++. ...+..|.+.+....|+|| ++.|+..+
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~-------------~~~~-~~~lt~~~~~~~~~~wSpD---------G~~l~f~s~ 303 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNA-------------DGSG-LRRLTQSSGIDTEPFFSPD---------GRSIYFTSD 303 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEEC-------------CCCC-cEECCCCCCCCcCeEEcCC---------CCEEEEEec
Confidence 5555 5654 56788888866652 1222 3345555556677889998 67666544
Q ss_pred CCCcEEEEEC--CCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcE
Q 000450 599 MDCSIRIWDL--GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 599 ~DgtV~lWDl--~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg---sV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
.++...+|.+ .+++.. .+..+........|+|+ |+.++..+.++ .|.+||+.+++......+ ....
T Consensus 304 ~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpD------G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~ 374 (427)
T PRK02889 304 RGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPD------GKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDE 374 (427)
T ss_pred CCCCcEEEEEECCCCceE-EEecCCCCcCceEECCC------CCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCcc
Confidence 4566666654 445432 22223334456789999 88888776654 699999998876543332 2346
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a 720 (1496)
...|+|||++|+..+.+ .+...+++-++ +|...+.+..+.+
T Consensus 375 ~p~~spdg~~l~~~~~~-----~g~~~l~~~~~-~g~~~~~l~~~~g 415 (427)
T PRK02889 375 SPSFAPNGRYILYATQQ-----GGRSVLAAVSS-DGRIKQRLSVQGG 415 (427)
T ss_pred CceECCCCCEEEEEEec-----CCCEEEEEEEC-CCCceEEeecCCC
Confidence 78999999999988876 11245777777 5666666655443
No 244
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.1e-05 Score=95.09 Aligned_cols=180 Identities=12% Similarity=0.134 Sum_probs=130.3
Q ss_pred ccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecC
Q 000450 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1496)
Q Consensus 502 ~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd 581 (1496)
.+.+.+|...|.+++-++... .+++++.|.++++|... ..+| ...+..+..++..|+.+|..+-|-.+
T Consensus 728 L~nf~GH~~~iRai~AidNEN----SFiSASkDKTVKLWSik--~EgD------~~~tsaCQfTY~aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN----SFISASKDKTVKLWSIK--PEGD------EIGTSACQFTYQAHKKPIHDIGFLAD 795 (1034)
T ss_pred eecccCcHHHhHHHHhccccc----ceeeccCCceEEEEEec--cccC------ccccceeeeEhhhccCcccceeeeec
Confidence 356789999999887666554 79999999999995543 2221 23455688889999999999999876
Q ss_pred CCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc--cCCCEEEEEECCCCCCCCCCCEEEEE-eCCCcEEEEECCC
Q 000450 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSVALASLET 658 (1496)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~--H~~~V~~l~~sPd~~~~~~g~~l~Sg-s~DgsV~lWdl~~ 658 (1496)
.+.++|+ |+-|.+||..-|+++..+.. ..+.+..+..-|+. +...+..| +...+|+++|.+.
T Consensus 796 ---------lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv----~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 796 ---------LRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV----DRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred ---------cceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccC----cchheeeeccchhhheeeeccc
Confidence 5677765 89999999998887764432 11223333333331 13444444 7789999999998
Q ss_pred CcEEEEe-----cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 659 LRVERMF-----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 659 ~~~l~~~-----~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++-...+ ++..+-+.+++..|.|++++++-.+ |+|.+-|.++|+.+...+
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSn--------Gci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSN--------GCIAILDARNGKVINSWR 915 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcC--------CcEEEEecCCCceeccCC
Confidence 7644333 4455668999999999999998887 999999999999776544
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00023 Score=82.54 Aligned_cols=192 Identities=15% Similarity=0.085 Sum_probs=134.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC--CcEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIR 604 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D--gtV~ 604 (1496)
.|+++-.+|.+.+|.-. . .+..+.+ ...+..| ..+..+.-++. ...++++||.. ..+.
T Consensus 117 ~Litc~~sG~l~~~~~k---~-------~d~hss~-l~~la~g-~g~~~~r~~~~--------~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDK---S-------GDLHSSK-LIKLATG-PGLYDVRQTDT--------DPYIVATGGKENINELK 176 (412)
T ss_pred EEEEEecCCcEEEEecc---C-------Ccccccc-ceeeecC-CceeeeccCCC--------CCceEecCchhccccee
Confidence 78888999999994322 0 1111112 2223222 33444444443 26788889988 8899
Q ss_pred EEECCCCceEEEEcccC---------CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEE
Q 000450 605 IWDLGSGNLITVMHHHV---------APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAK 674 (1496)
Q Consensus 605 lWDl~tg~~l~~~~~H~---------~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~ 674 (1496)
+||++..+.+..-+.-. -.++.+.|-|.. ....|+++..-+.|++||.+.+ +++..|.--..++++
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~----~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGS----PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS 252 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCC----CCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence 99999875443322110 124577776641 1468999999999999999865 578888888889999
Q ss_pred EEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE-EeCCCCCceeeeeecccccccccceEEcCCcccccccee
Q 000450 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLP 753 (1496)
Q Consensus 675 V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~-l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~ 753 (1496)
+...|+++++++|..- |.+..+|++++++... +.|.++.+..+|..+. +....+..+
T Consensus 253 ~~l~p~gn~Iy~gn~~--------g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~------------~~~las~GL-- 310 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTK--------GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT------------HPVLASCGL-- 310 (412)
T ss_pred eeecCCCcEEEEeccc--------chhheecccCceeeccccCCccCCcceEEEcCC------------CceEEeecc--
Confidence 9999999999999887 9999999999998876 8888877777755521 234445555
Q ss_pred eccCCcEEeecccc
Q 000450 754 IHEDGTFRQSQIQN 767 (1496)
Q Consensus 754 ~~~D~~ir~W~l~~ 767 (1496)
|.-+|+.++++
T Consensus 311 ---DRyvRIhD~kt 321 (412)
T KOG3881|consen 311 ---DRYVRIHDIKT 321 (412)
T ss_pred ---ceeEEEeeccc
Confidence 88899987643
No 246
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.99 E-value=5.6e-05 Score=87.96 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=86.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCC
Q 000450 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPN 670 (1496)
Q Consensus 592 ~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-~gH~~ 670 (1496)
......+.+..+.+|....+.+. .+-+|...++.|+|+|| ++.++++..|..|++-....--.+..| .||..
T Consensus 123 ~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPD------DQFIITADRDEKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred EEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCC------CCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence 34445566677888887765544 44589999999999999 899999999999999887765555554 58999
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 671 ~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
.|..++.-++. .|++++.| ++|++||+++|++++++.
T Consensus 196 FVS~isl~~~~-~LlS~sGD--------~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 196 FVSTISLTDNY-LLLSGSGD--------KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred heeeeeeccCc-eeeecCCC--------CcEEEEecccCCcccccc
Confidence 99999997764 47777666 999999999999886653
No 247
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=2.3e-05 Score=89.07 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=103.3
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-----ceEEEEcccCCCEEEEEECC-CCCCCCCCCEE
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-----NLITVMHHHVAPVRQIILSP-PQTEHPWSDCF 642 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-----~~l~~~~~H~~~V~~l~~sP-d~~~~~~g~~l 642 (1496)
-++.|.++.|+.. +.+++.|...|.|...|++.+ .+.+.+ -|...|+++..-. + ++++
T Consensus 251 sksDVfAlQf~~s---------~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s------~q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFAGS---------DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFS------QQKL 314 (425)
T ss_pred cchhHHHHHhccc---------CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccc------cceE
Confidence 4677889998875 789999999999999999865 344555 4788888887655 3 7899
Q ss_pred EEEeCCCcEEEEECCCCcE---EEEecCCCCCcE--EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 643 LSVGEDFSVALASLETLRV---ERMFPGHPNYPA--KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~---l~~~~gH~~~V~--~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
++.+-+|+|++||++--++ ++++.||.+.-. -+...+....+++++.| ...|||.++.|++++++.-
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD--------cytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD--------CYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe--------eEEEEEecccCceeeccCC
Confidence 9999999999999987777 999999977432 34456788899988888 9999999999999988765
Q ss_pred CC
Q 000450 718 TA 719 (1496)
Q Consensus 718 h~ 719 (1496)
.-
T Consensus 387 ~~ 388 (425)
T KOG2695|consen 387 PY 388 (425)
T ss_pred CC
Confidence 43
No 248
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.0011 Score=82.30 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=84.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC----------CCcEEEEECCCCcE
Q 000450 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE----------DFSVALASLETLRV 661 (1496)
Q Consensus 592 ~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~----------DgsV~lWdl~~~~~ 661 (1496)
.+++.|...|+|-+.|+.++..-..|..|++.|.++.|--. ..|+|-+. -+.+.+-|+++|..
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~-------sslvSfsys~~n~~sg~vrN~l~vtdLrtGls 510 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGN-------SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS 510 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccc-------eeEEEeeeccccccccceeeeEEEEEcccccc
Confidence 47889999999999999999999999999999999999654 24444332 34566889998865
Q ss_pred E--EEecC-CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 662 E--RMFPG-HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 662 l--~~~~g-H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
. +.+++ ...+|..+..+..++||+..-.| .-+.+||+++-++++
T Consensus 511 k~fR~l~~~despI~~irvS~~~~yLai~Fr~--------~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 511 KRFRGLQKPDESPIRAIRVSSSGRYLAILFRR--------EPLEIWDLKTLRMLR 557 (1062)
T ss_pred cccccCCCCCcCcceeeeecccCceEEEEecc--------cchHHHhhccchHHH
Confidence 3 22222 34589999999999999999999 899999998866543
No 249
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.90 E-value=3.3e-05 Score=61.67 Aligned_cols=38 Identities=34% Similarity=0.563 Sum_probs=36.0
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEE
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWD 607 (1496)
+++.++.+|.+.|++++|+|+ +.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~---------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD---------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT---------SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc---------cccceeeCCCCEEEEEC
Confidence 578899999999999999997 89999999999999998
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.0012 Score=81.97 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=88.6
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-CCCcEEEEE--CCC-CceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWD--LGS-GNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs-~DgtV~lWD--l~t-g~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
..+...++.+......|+|| ++.|+..+ .++...+|. +.. +.....+..+.+.+....|+||
T Consensus 272 ~~~lt~~~~~~~~~p~wSPD---------G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD----- 337 (428)
T PRK01029 272 PRRLLNEAFGTQGNPSFSPD---------GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD----- 337 (428)
T ss_pred ceEeecCCCCCcCCeEECCC---------CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC-----
Confidence 33334343344567899998 67655444 566655654 432 3334555555567788999999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 638 WSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 638 ~g~~l~Sgs~D---gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|+.|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+....+ ++...|++||+.+++..+.
T Consensus 338 -G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~-----~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 338 -GKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN-----SNESELYLISLITKKTRKI 410 (428)
T ss_pred -CCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEEe
Confidence 8877766543 468999999888754433 33456789999999998865543 2236899999988876544
Q ss_pred E
Q 000450 715 L 715 (1496)
Q Consensus 715 l 715 (1496)
.
T Consensus 411 t 411 (428)
T PRK01029 411 V 411 (428)
T ss_pred e
Confidence 4
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.85 E-value=4.8e-05 Score=100.75 Aligned_cols=147 Identities=10% Similarity=0.145 Sum_probs=115.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE--ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF--LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l--~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~ 604 (1496)
+.++|+.||.+++|.|.. +..+.++ .|. ..|+.+.|+.. |..+..+..||.+.
T Consensus 2222 ~Yltgs~dgsv~~~~w~~---------------~~~v~~~rt~g~-s~vtr~~f~~q---------Gnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGH---------------GQQVVCFRTAGN-SRVTRSRFNHQ---------GNKFGIVDGDGDLS 2276 (2439)
T ss_pred eEEecCCCceEEEEeccC---------------CCeEEEeeccCc-chhhhhhhccc---------CCceeeeccCCcee
Confidence 778999999999988861 2223333 233 78999999876 78888888999999
Q ss_pred EEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe---CCCcEEEEECCC--C-cEEEEecCCCCCcEEEEEc
Q 000450 605 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---EDFSVALASLET--L-RVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 605 lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs---~DgsV~lWdl~~--~-~~l~~~~gH~~~V~~V~~s 678 (1496)
+|.+. .+.....+.|......+.|-- ..+++.+ .++.+.+||..- + .++. ..|...++++++-
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~--------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIG--------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYA 2345 (2439)
T ss_pred ecccC-CcceeccccCCccccceeeee--------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEc
Confidence 99986 677788888988888888753 3556553 578999999642 2 3444 6799999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
|....|++|+.+ |.|++||++..++.+++..
T Consensus 2346 P~~qllisggr~--------G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2346 PKHQLLISGGRK--------GEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred CcceEEEecCCc--------CcEEEeehHHHHHHHHhhh
Confidence 999999999999 9999999998887766654
No 252
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.84 E-value=4e-05 Score=61.22 Aligned_cols=39 Identities=23% Similarity=0.527 Sum_probs=37.0
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+++++.+.+|...|++++|+|++.+|++++.| ++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D--------~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSD--------GTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETT--------SEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCC--------CEEEEEC
Confidence 46889999999999999999999999999999 9999997
No 253
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00015 Score=90.58 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=124.8
Q ss_pred ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCc
Q 000450 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1496)
Q Consensus 523 f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dgt 602 (1496)
|+-..++.|..+|.+.+...+ +.+ .+...|+.. .. .|.+++|||.||+
T Consensus 47 v~~~~~~~GtH~g~v~~~~~~----------------~~~-~~~~~~s~~------~~---------~Gey~asCS~DGk 94 (846)
T KOG2066|consen 47 VHDKFFALGTHRGAVYLTTCQ----------------GNP-KTNFDHSSS------IL---------EGEYVASCSDDGK 94 (846)
T ss_pred hhcceeeeccccceEEEEecC----------------Ccc-ccccccccc------cc---------CCceEEEecCCCc
Confidence 666689999999999985443 122 233344433 22 3899999999999
Q ss_pred EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC---CCcEEEEecCCCCCcEEEEEcC
Q 000450 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 603 V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~---~~~~l~~~~gH~~~V~~V~~sp 679 (1496)
|.|-.+.+.+..+++.- ..++.+|+++|+ ..+...+.+++||.-| +.++.-+ ....+ .+..-.++|.+|+|.
T Consensus 95 v~I~sl~~~~~~~~~df-~rpiksial~Pd-~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 95 VVIGSLFTDDEITQYDF-KRPIKSIALHPD-FSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR- 169 (846)
T ss_pred EEEeeccCCccceeEec-CCcceeEEeccc-hhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec-
Confidence 99999999988877754 458999999998 4445567899999888 6665422 11222 334456789999997
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCc
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 745 (1496)
Q Consensus 680 dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~ 745 (1496)
|.+++-+..+ -|+|||+.+++.+..+.-....+-...|-+.......+..++.|..
T Consensus 170 -g~lIAWand~---------Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d 225 (846)
T KOG2066|consen 170 -GNLIAWANDD---------GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD 225 (846)
T ss_pred -CcEEEEecCC---------CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC
Confidence 6688887766 4899999999988877765545544445555556666677776654
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.79 E-value=0.0012 Score=81.46 Aligned_cols=124 Identities=18% Similarity=0.133 Sum_probs=86.2
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCC-EEEEEeCCC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 566 FLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 566 l~gH~~~V~~La~spd~~~~~~~~~~~-~L~SGs~Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
+..+.+.+.++.|+|| ++ ++++.+.++ .|.+||+.++.. ..+..+........|+|+ ++.+
T Consensus 229 ~~~~~~~~~~~~~spD---------g~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d------g~~l 292 (417)
T TIGR02800 229 VASFPGMNGAPAFSPD---------GSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPD------GKSI 292 (417)
T ss_pred eecCCCCccceEECCC---------CCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCC------CCEE
Confidence 3445566778899998 55 445555554 588999987764 344455555567789998 7877
Q ss_pred EEEeCC-C--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 643 LSVGED-F--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 643 ~Sgs~D-g--sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
+.++.. + .|.++|+.+++.. .+..+...+....|+|++++++..+.+ .+...|++||+.++..
T Consensus 293 ~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~-----~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHRE-----GGGFNIAVMDLDGGGE 358 (417)
T ss_pred EEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEcc-----CCceEEEEEeCCCCCe
Confidence 766543 3 5778888877654 333455567788999999999988876 1113899999988654
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.71 E-value=0.00011 Score=83.57 Aligned_cols=129 Identities=14% Similarity=0.205 Sum_probs=93.6
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce---EEEEccc-----CCCEEEEEECCCCCCCCC
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL---ITVMHHH-----VAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~---l~~~~~H-----~~~V~~l~~sPd~~~~~~ 638 (1496)
.+|+--|+++.++.| .+.++|+ .|-.|.+|+++--.. +..++.+ +.-|++..|+|..
T Consensus 161 NaHtyhiNSIS~NsD---------~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~----- 225 (433)
T KOG1354|consen 161 NAHTYHINSISVNSD---------KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH----- 225 (433)
T ss_pred ccceeEeeeeeecCc---------cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-----
Confidence 578888999999887 7888887 588999999874332 1222222 3458888999986
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEE----EEe------------cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEE
Q 000450 639 SDCFLSVGEDFSVALASLETLRVE----RMF------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~l----~~~------------~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~ 702 (1496)
.+.|+-.+..|+|+|-|++..... ..| .+--+.|..++|++.|+|+++-.. -+|+
T Consensus 226 cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy---------ltvk 296 (433)
T KOG1354|consen 226 CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY---------LTVK 296 (433)
T ss_pred ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc---------ceeE
Confidence 568999999999999999842110 111 112236789999999999997665 4999
Q ss_pred EEEC-CCCeEEEEEeCCC
Q 000450 703 IWDV-KTGARERVLRGTA 719 (1496)
Q Consensus 703 VWDl-~tg~~~~~l~gh~ 719 (1496)
+||+ ...+.+.++.-|.
T Consensus 297 ~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 297 LWDLNMEAKPVETYPVHE 314 (433)
T ss_pred EEeccccCCcceEEeehH
Confidence 9999 4566677777665
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.65 E-value=0.0028 Score=78.23 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=109.3
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEE-EEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVY-GFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~-Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1496)
..+.+|++..... ..+..+...+.+.. |+|+ .+++ ...+|...|+.|+ ..++.
T Consensus 214 ~~i~v~d~~~g~~-----~~~~~~~~~~~~~~------~spDg~~l~~~~~~~~~~~i~~~d-------------~~~~~ 269 (417)
T TIGR02800 214 PEIYVQDLATGQR-----EKVASFPGMNGAPA------FSPDGSKLAVSLSKDGNPDIYVMD-------------LDGKQ 269 (417)
T ss_pred cEEEEEECCCCCE-----EEeecCCCCccceE------ECCCCCEEEEEECCCCCccEEEEE-------------CCCCC
Confidence 3566777654321 11122333344444 5554 5554 4556665555455 22222
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC-CC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~-Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
...+..|.+......|+|+ ++.|+..+. ++ .|.+||+.+++. ..+..+...+....|+|+
T Consensus 270 -~~~l~~~~~~~~~~~~s~d---------g~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spd------ 332 (417)
T TIGR02800 270 -LTRLTNGPGIDTEPSWSPD---------GKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPD------ 332 (417)
T ss_pred -EEECCCCCCCCCCEEECCC---------CCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCC------
Confidence 2334445555556788887 676655543 33 588888887764 344445566778899999
Q ss_pred CCEEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 639 SDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 639 g~~l~Sgs~Dg---sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
++.++..+.++ .|.+||+.++.... +... .......|+||+++|+..+.+ ++...+++.+. +|...+.+
T Consensus 333 g~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~-----~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTR-----GGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred CCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeC-----CCcEEEEEEEC-CCceeeEC
Confidence 88888888776 88999998865433 3322 224456899999999988876 22235666664 34544554
Q ss_pred eC
Q 000450 716 RG 717 (1496)
Q Consensus 716 ~g 717 (1496)
..
T Consensus 405 ~~ 406 (417)
T TIGR02800 405 PL 406 (417)
T ss_pred CC
Confidence 43
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.61 E-value=0.0039 Score=77.62 Aligned_cols=165 Identities=16% Similarity=0.086 Sum_probs=101.2
Q ss_pred cCCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 507 HKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 507 ~h~~~Vts~~~~s~~~f~P~~lv~Gs~-dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+...+.+..+.++.. .+++.+. ++.-.|+.|+ ..+++.. .+....+.+....|+||
T Consensus 196 ~~~~~~~~p~wSpDG~----~la~~s~~~~~~~l~~~~-------------l~~g~~~-~l~~~~g~~~~~~~SpD---- 253 (430)
T PRK00178 196 QSREPILSPRWSPDGK----RIAYVSFEQKRPRIFVQN-------------LDTGRRE-QITNFEGLNGAPAWSPD---- 253 (430)
T ss_pred cCCCceeeeeECCCCC----EEEEEEcCCCCCEEEEEE-------------CCCCCEE-EccCCCCCcCCeEECCC----
Confidence 3445566666333333 6766554 3443454454 2233322 23333344557899998
Q ss_pred ccCcCCCEEE-EEeCCC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-CC--cEEEEECCCC
Q 000450 586 KGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DF--SVALASLETL 659 (1496)
Q Consensus 586 ~~~~~~~~L~-SGs~Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-Dg--sV~lWdl~~~ 659 (1496)
++.|+ +.+.++ .|.+||+.+++.. .+..+........|+|+ |+.++..+. ++ .|.++|+.++
T Consensus 254 -----G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spD------g~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 254 -----GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKD------GRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred -----CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCC------CCEEEEEECCCCCceEEEEECCCC
Confidence 66554 665555 5888899887654 45556666677889999 776665543 33 5777788887
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 660 ~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
+..+... .........|+|||++|+....+ ++...|++||+.+++.
T Consensus 322 ~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~-----~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 322 RAERVTF-VGNYNARPRLSADGKTLVMVHRQ-----DGNFHVAAQDLQRGSV 367 (430)
T ss_pred CEEEeec-CCCCccceEECCCCCEEEEEEcc-----CCceEEEEEECCCCCE
Confidence 7544322 12234467899999999887654 1124699999998865
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00094 Score=75.08 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=92.9
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEE--EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT--VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~--~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dgs 650 (1496)
..++.|++. +..++++-.+|.+.+-+...+.+.. .++.|.-+++...|+-.+ .+.+.+||.|+.
T Consensus 124 ~lslD~~~~---------~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-----pnlvytGgDD~~ 189 (339)
T KOG0280|consen 124 ALSLDISTS---------GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-----PNLVYTGGDDGS 189 (339)
T ss_pred eeEEEeecc---------CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-----CceEEecCCCce
Confidence 346677764 6778888889999876666555544 889999999999998763 579999999999
Q ss_pred EEEEECC-CCcEEEE-ecCCCCCcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEE
Q 000450 651 VALASLE-TLRVERM-FPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARE 712 (1496)
Q Consensus 651 V~lWdl~-~~~~l~~-~~gH~~~V~~V~~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~ 712 (1496)
+..||++ .++.+.. -..|...|.+|.-+| .+.+++||+.| ..|++||.++ |+.+
T Consensus 190 l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD--------e~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 190 LSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD--------ECIRVLDTRNMGKPL 247 (339)
T ss_pred EEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccc--------cceeeeehhcccCcc
Confidence 9999999 4444433 456888999999886 46799999998 8999999984 4443
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.61 E-value=0.0026 Score=79.17 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=90.9
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC---CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D---gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.+.+..|...+....|+|| ++.|+..+.+ ..|.+||+.+++... +....+.+....|+|+ |
T Consensus 191 ~~~l~~~~~~~~~p~wSpD---------G~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD------G 254 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPD---------GKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD------G 254 (430)
T ss_pred ceEEecCCCceeeeeECCC---------CCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC------C
Confidence 3455567778999999998 7777665533 368999999887543 3333445567899999 7
Q ss_pred CEEE-EEeCCC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 640 DCFL-SVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 640 ~~l~-Sgs~Dg--sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
+.++ +.+.++ .|.+||+++++..+ +..+........|+|||+.|+..+.. ++...|+++|+.+|+..+.
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~-----~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDR-----GGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEEe
Confidence 7665 555555 58888998877543 44455556778999999988776543 1225799999988875443
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.57 E-value=0.0027 Score=78.97 Aligned_cols=125 Identities=16% Similarity=0.171 Sum_probs=79.1
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEe-C----CCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCCCCCCCCCE
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGS-M----DCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs-~----DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
.+.....+|+|| ++.|+-.+ . |-.+..||+..+ +.......+.+......|+|| |+.
T Consensus 230 ~g~~~~p~wSPD---------G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD------G~~ 294 (428)
T PRK01029 230 QGNQLMPTFSPR---------KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD------GTR 294 (428)
T ss_pred CCCccceEECCC---------CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC------CCE
Confidence 344556899998 66555433 2 334555887653 333333333344567899999 887
Q ss_pred EEEEe-CCCcEEEEE--CCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 642 FLSVG-EDFSVALAS--LET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 642 l~Sgs-~DgsV~lWd--l~~-~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|+..+ .++...+|. +.. +.....+..+...+....|+|||++|+..+.+ ++...|++||+.+|+....
T Consensus 295 Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-----~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-----KGVRQICVYDLATGRDYQL 366 (428)
T ss_pred EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-----CCCcEEEEEECCCCCeEEc
Confidence 77665 466656664 432 23344454455567789999999999877654 2225799999999876443
No 261
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00034 Score=79.87 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=87.3
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+..|+.+|.|.++++..-. -..+.+.+.+. |...|+|+..-.. +++.|.+.+++|+|++|
T Consensus 266 Lv~~GcRngeI~~iDLR~rn----------qG~~~~a~rly-h~Ssvtslq~Lq~--------s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 266 LVFNGCRNGEIFVIDLRCRN----------QGNGWCAQRLY-HDSSVTSLQILQF--------SQQKLMASDMTGKIKLY 326 (425)
T ss_pred eeEecccCCcEEEEEeeecc----------cCCCcceEEEE-cCcchhhhhhhcc--------ccceEeeccCcCceeEe
Confidence 78999999999996654211 11233444444 8889999886542 27889999999999999
Q ss_pred ECCCCce---EEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 000450 607 DLGSGNL---ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 607 Dl~tg~~---l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g 667 (1496)
|++.-++ ++++.+|...-.-+-+.-+ +....+++++.|.-.|+|.++.+..+.+++-
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~----~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLPAHVK----EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eehhhhcccceeeeecccccccccccccc----cccceEEEccCeeEEEEEecccCceeeccCC
Confidence 9987776 8899999764443333222 2256888899999999999999999888763
No 262
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.55 E-value=0.00034 Score=81.65 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=74.5
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc-ccCCCEEEEEECCCCCCCCCCCEE
Q 000450 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 564 ~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~-~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
..+-||-..++.++++|| +++++++..|..|++=....-..+..|. ||+.-|..+++-++ +.|
T Consensus 145 ~~~lGhvSml~dVavS~D---------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------~~L 208 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPD---------DQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------YLL 208 (390)
T ss_pred chhhhhhhhhheeeecCC---------CCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------cee
Confidence 345699999999999998 7999999999999987666555555554 59999999999875 569
Q ss_pred EEEeCCCcEEEEECCCCcEEEEec
Q 000450 643 LSVGEDFSVALASLETLRVERMFP 666 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~~~ 666 (1496)
+|+|.|+++++||+++|+++.++.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecCCCCcEEEEecccCCcccccc
Confidence 999999999999999999987774
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.49 E-value=0.0043 Score=77.67 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=87.9
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC-CC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 564 ~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~-Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
+.+..+...+.+..|+|| ++.|+-.+. ++ .|.+||+.+++... +....+......|+|| |+
T Consensus 211 ~~l~~~~~~~~~p~wSPD---------G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD------G~ 274 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPD---------GRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD------GK 274 (448)
T ss_pred eEeecCCCcccCceECCC---------CCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC------CC
Confidence 345556778899999998 676665543 33 58899998887532 2222333457889999 77
Q ss_pred EEE-EEeCCCc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 641 CFL-SVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 641 ~l~-Sgs~Dgs--V~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
.|+ +.+.++. |.++|+.+++.. .+..+........|+|||++|+..+.. ++...|+++|+.+++..+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~-----~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSER-----GGKPQIYRVNLASGKVSR 344 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 555 5566665 777788877654 344455566788999999998876643 122578899998887644
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.48 E-value=0.3 Score=58.88 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=63.0
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEe----------CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC-EEEEEEcC
Q 000450 622 APVRQIILSPPQTEHPWSDCFLSVG----------EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG-YIACLCRD 690 (1496)
Q Consensus 622 ~~V~~l~~sPd~~~~~~g~~l~Sgs----------~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~-~L~tgs~D 690 (1496)
+.+.-++++|+ ++.+.... ..+.|.++|..+++.+..+.. ...++.++++||++ +|++.+..
T Consensus 248 ~g~q~ia~~~d------g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 248 GGWQQVAYHRA------RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred CcceeEEEcCC------CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence 44556899998 56555432 225899999999999988863 34789999999999 88877743
Q ss_pred CCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 691 HSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 691 ~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++.|.|.|+.+++.++.+.
T Consensus 321 -------s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 321 -------DKTLYIFDAETGKELSSVN 339 (352)
T ss_pred -------CCcEEEEECcCCeEEeeec
Confidence 2789999999999998874
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.097 Score=64.00 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=82.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC---CcE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSI 603 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D---gtV 603 (1496)
.++.|+.=-.+.|++.+ +.++. .--.++=+++.|+|. +++++-+|.+ |.|
T Consensus 286 ~VvyGfMPAkvtifnlr----------------~~~v~--df~egpRN~~~fnp~---------g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR----------------GKPVF--DFPEGPRNTAFFNPH---------GNIILLAGFGNLPGDM 338 (566)
T ss_pred EEEEecccceEEEEcCC----------------CCEeE--eCCCCCccceEECCC---------CCEEEEeecCCCCCce
Confidence 57788887778873322 22333 233567789999996 7877766644 789
Q ss_pred EEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC------CCcEEEEECCCCcEEE--EecCCCCCcEEE
Q 000450 604 RIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------DFSVALASLETLRVER--MFPGHPNYPAKV 675 (1496)
Q Consensus 604 ~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~------DgsV~lWdl~~~~~l~--~~~gH~~~V~~V 675 (1496)
-+||..+.+++..+..-.. +-+.|+|| |.+|+++.. |..++||+.. |+.+. +|+. ..+.+
T Consensus 339 EvwDv~n~K~i~~~~a~~t--t~~eW~Pd------Ge~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s---EL~qv 406 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAANT--TVFEWSPD------GEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS---ELLQV 406 (566)
T ss_pred EEEeccchhhccccccCCc--eEEEEcCC------CcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH---hHhhe
Confidence 9999999999988876543 55789999 899888764 7899999976 55443 2322 57889
Q ss_pred EEcCC
Q 000450 676 VWDCP 680 (1496)
Q Consensus 676 ~~spd 680 (1496)
.|.|-
T Consensus 407 ~W~P~ 411 (566)
T KOG2315|consen 407 EWRPF 411 (566)
T ss_pred eeeec
Confidence 99874
No 266
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.47 E-value=0.00023 Score=78.51 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=71.7
Q ss_pred cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EEecCCCCCcEEEEEcC-
Q 000450 602 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-RMFPGHPNYPAKVVWDC- 679 (1496)
Q Consensus 602 tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l-~~~~gH~~~V~~V~~sp- 679 (1496)
..+.|+++..+.+..-+.-...|.+++-+|.. .+.+++|+.||.+.+||.++.... ..+..|..+++.|-|+|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q-----q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQ-----QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCccc-----ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 45667766544332222223348888888874 678999999999999999987543 44578999999999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 680 dg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
++..|++++.| |.+.-||..+
T Consensus 235 ~p~~Lft~sed--------Gslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSED--------GSLWHWDAST 255 (319)
T ss_pred CchheeEecCC--------CcEEEEcCCC
Confidence 56789999998 9999999865
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.041 Score=68.09 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=85.0
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
..++.|-+++|.+++.+ ..+|+.+-..|.|.-+.+..+-+...... ...|.++.++-+ ...+
T Consensus 497 ~kt~~G~~DpICAl~~s-----------dk~l~vareSG~I~rySl~nv~l~n~y~~-n~~~y~~~lNCn------stRl 558 (1189)
T KOG2041|consen 497 TKTLLGSKDPICALCIS-----------DKFLMVARESGGIYRYSLNNVVLTNSYPV-NPSIYSIKLNCN------STRL 558 (1189)
T ss_pred ceeeccCCCcceeeeec-----------ceEEEEEeccCceEEEEecceeeeecccc-CchheeEeeccC------cchh
Confidence 35677888999999875 58899999999999999988776665543 346888888765 5567
Q ss_pred EEEeCCCcEEEEECC---CCcEEE-EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 643 LSVGEDFSVALASLE---TLRVER-MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~---~~~~l~-~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+...--|.+.+.|+. ++..+. .+......|+.+.|..|...|+..-.. -.++|++-.
T Consensus 559 AiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeK--------trmyifrgn 619 (1189)
T KOG2041|consen 559 AIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEK--------TRMYIFRGN 619 (1189)
T ss_pred hhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhh--------ceEEEecCc
Confidence 777667788888876 344444 334455679999998887766554433 456666543
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.00044 Score=84.46 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=121.9
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC-CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000450 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH-NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 510 ~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~-d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~ 588 (1496)
..+.+..+..+.. ++++|+.||-++|...+.-... ...+ +-...+...-+++.||++.|.-+.|+..
T Consensus 15 vkL~c~~WNke~g----yIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQtLeGH~~sV~vvTWNe~------- 82 (1189)
T KOG2041|consen 15 VKLHCAEWNKESG----YIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQTLEGHNASVMVVTWNEN------- 82 (1189)
T ss_pred ceEEEEEEcccCC----eEEeccccceeEEEEccccCCcccccc-cccccccchhhhhccCcceEEEEEeccc-------
Confidence 4566777666666 8999999999999776532111 0011 1112222345778999999999999986
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEcc--cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EEe
Q 000450 589 SFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-RMF 665 (1496)
Q Consensus 589 ~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~--H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l-~~~ 665 (1496)
.+.|-|...+|.|.+|-+..|.-...+.. ..+.|.++.|+-| |..++-+-.||.|.+=.++..+.. +.+
T Consensus 83 --~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d------G~kIcIvYeDGavIVGsvdGNRIwgKeL 154 (1189)
T KOG2041|consen 83 --NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD------GTKICIVYEDGAVIVGSVDGNRIWGKEL 154 (1189)
T ss_pred --cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC------CcEEEEEEccCCEEEEeeccceecchhc
Confidence 78899999999999999998875433332 3457899999999 899999999999988777654432 122
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 666 ~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
.|. ....+.|++|.+.++.+-.+ |.+.++|...
T Consensus 155 kg~--~l~hv~ws~D~~~~Lf~~an--------ge~hlydnqg 187 (1189)
T KOG2041|consen 155 KGQ--LLAHVLWSEDLEQALFKKAN--------GETHLYDNQG 187 (1189)
T ss_pred chh--eccceeecccHHHHHhhhcC--------CcEEEecccc
Confidence 221 23478999999988877776 8999999753
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.42 E-value=0.0086 Score=74.98 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=93.8
Q ss_pred ccCC--EEEEEE-cCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEE-EEEe
Q 000450 523 YAPY--AIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVL-VSGS 598 (1496)
Q Consensus 523 f~P~--~lv~Gs-~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L-~SGs 598 (1496)
|+|+ .++..+ .+|...||.++ ..+++.. .+....+......|+|| ++.| ++.+
T Consensus 225 wSPDG~~La~~s~~~g~~~L~~~d-------------l~tg~~~-~lt~~~g~~~~~~wSPD---------G~~La~~~~ 281 (448)
T PRK04792 225 WSPDGRKLAYVSFENRKAEIFVQD-------------IYTQVRE-KVTSFPGINGAPRFSPD---------GKKLALVLS 281 (448)
T ss_pred ECCCCCEEEEEEecCCCcEEEEEE-------------CCCCCeE-EecCCCCCcCCeeECCC---------CCEEEEEEe
Confidence 5554 676654 35565665555 2223321 12222233446789998 5644 5566
Q ss_pred CCCc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-CC--cEEEEECCCCcEEEE-ecCCCCCc
Q 000450 599 MDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DF--SVALASLETLRVERM-FPGHPNYP 672 (1496)
Q Consensus 599 ~Dgt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-Dg--sV~lWdl~~~~~l~~-~~gH~~~V 672 (1496)
.++. |.+||+.+++. ..+..+........|+|| ++.++..+. ++ .|.++|+.+++..+. +.++ ..
T Consensus 282 ~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpD------G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~ 352 (448)
T PRK04792 282 KDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPD------GKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QN 352 (448)
T ss_pred CCCCeEEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CC
Confidence 6775 77889887764 444555556678899999 776665543 33 466668877776443 2322 33
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 673 ~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
....|+|||++|+....+ ++...|+++|+.+++.
T Consensus 353 ~~~~~SpDG~~l~~~~~~-----~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRT-----NGKFNIARQDLETGAM 386 (448)
T ss_pred cCeeECCCCCEEEEEEec-----CCceEEEEEECCCCCe
Confidence 457999999999887654 1113678889988875
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.00035 Score=82.91 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=119.4
Q ss_pred CCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCc--eeeeEEeeccccceeEeeeccccccccCccccccccc
Q 000450 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSE--IKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAE 89 (1496)
Q Consensus 12 ~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~--~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~ 89 (1496)
-+.+...|.+++.-.+..-.++++.|.+|++|.+.++..+. .....+...|+.+|..+.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf------------------ 792 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF------------------ 792 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee------------------
Confidence 34566678888888788889999999999999998632111 1234456789999999984
Q ss_pred ccccccccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCC-CCeEEEEcccccccCCccccccc
Q 000450 90 NSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS-NPRYVCIGCCFIDTNQLSDHHSF 168 (1496)
Q Consensus 90 ~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~-~~~ll~~G~~~id~~~l~~~~~~ 168 (1496)
-.|..++ +|.||.|.+||---|+.+....-.+.+|..+.|..++. +..++..||.
T Consensus 793 ---------L~~lr~i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs------------- 848 (1034)
T KOG4190|consen 793 ---------LADLRSI--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS------------- 848 (1034)
T ss_pred ---------eecccee--eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc-------------
Confidence 3344444 46799999999888877765444455677888888876 5556666664
Q ss_pred ccccccccccccCCCCCCCCccEEEEEECCceEEEEEEecCcccc---CCeEEEEEeeccCCCCceeEEEEeCCCcEEEE
Q 000450 169 ESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSI---GPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLV 245 (1496)
Q Consensus 169 ~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~---~~i~~l~~s~~~~d~~~~~llvas~dG~V~lW 245 (1496)
...+|.++|.++.+-+..+.. +..+ .-++++++.+ .|+ .+.+|-++|.|.+.
T Consensus 849 -------------------aeSTVKl~DaRsce~~~E~kV-cna~~Pna~~R~iaVa~---~GN--~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 849 -------------------AESTVKLFDARSCEWTCELKV-CNAPGPNALTRAIAVAD---KGN--KLAAALSNGCIAIL 903 (1034)
T ss_pred -------------------chhhheeeecccccceeeEEe-ccCCCCchheeEEEecc---Ccc--hhhHHhcCCcEEEE
Confidence 126788888887766655543 2222 2367888763 344 36666788999999
Q ss_pred ECCCC
Q 000450 246 PISKE 250 (1496)
Q Consensus 246 dl~~~ 250 (1496)
|..++
T Consensus 904 DaR~G 908 (1034)
T KOG4190|consen 904 DARNG 908 (1034)
T ss_pred ecCCC
Confidence 87776
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.37 E-value=0.00065 Score=83.57 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=114.5
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg 649 (1496)
|-...|+|.- + ...++++.+...+ .+|++... ..-..+.+|+..|+.+-|+|.. ...+++++.|.
T Consensus 70 vad~qws~h~--a----~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~-----pdVlatcsvdt 137 (1081)
T KOG0309|consen 70 VADVQWSPHP--A----KPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-----PDVLATCSVDT 137 (1081)
T ss_pred hcceecccCC--C----CceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCC-----Ccceeeccccc
Confidence 5566777641 1 2567888776554 57998643 2346778999999999999984 56999999999
Q ss_pred cEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeee
Q 000450 650 SVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHF 727 (1496)
Q Consensus 650 sV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~ 727 (1496)
.|..||++.. +++..+..-...-..|+|+.-...+++.+.. ..|+|||.+-| ..+..+.||.+.+..+.|
T Consensus 138 ~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg--------~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 138 YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG--------NDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred cceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC--------CceEEEeccCCCcceEEecccceeeehHHH
Confidence 9999999874 4566665555567789999766655555554 67999999875 578899999887776654
Q ss_pred ecccccccccceEEcCCccccccceeeccCCcEEeeccccc
Q 000450 728 CKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 728 ~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
... .-..++..+.|++++.|+....
T Consensus 210 nr~----------------~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 210 NRF----------------KYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hhh----------------hhhhhcccCCCCceeeeccccc
Confidence 421 1122345566999999986443
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.32 E-value=0.22 Score=60.24 Aligned_cols=123 Identities=18% Similarity=0.296 Sum_probs=83.2
Q ss_pred ccEEEEEEecCCCCcccCcCCC-EEEEEeCCCcEEEEECC--CCce--EEEEcc----c--CCCEEEEEECCCCCCCCCC
Q 000450 571 GAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLG--SGNL--ITVMHH----H--VAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 571 ~~V~~La~spd~~~~~~~~~~~-~L~SGs~DgtV~lWDl~--tg~~--l~~~~~----H--~~~V~~l~~sPd~~~~~~g 639 (1496)
..-..++|+|+ ++ ..+..-.+++|.++++. ++.. +..+.. . ......|.++|+ |
T Consensus 192 ~GPRh~~f~pd---------g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------g 256 (345)
T PF10282_consen 192 SGPRHLAFSPD---------GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------G 256 (345)
T ss_dssp SSEEEEEE-TT---------SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------S
T ss_pred CCCcEEEEcCC---------cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------C
Confidence 34578999997 55 44666778899999988 4432 222221 1 125788999999 6
Q ss_pred CE-EEEEeCCCcEEEEECC--CCc--EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC--CCCeEE
Q 000450 640 DC-FLSVGEDFSVALASLE--TLR--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARE 712 (1496)
Q Consensus 640 ~~-l~Sgs~DgsV~lWdl~--~~~--~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl--~tg~~~ 712 (1496)
++ +++.-.+.+|.+|+++ +++ .+..++.....+..+.++|+|++|++++.+ .+.|.+|++ ++|.+.
T Consensus 257 ~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-------s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-------SNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-------TTEEEEEEEETTTTEEE
T ss_pred CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-------CCeEEEEEEeCCCCcEE
Confidence 65 4555578899999993 343 344444445568999999999999999987 268998865 688875
Q ss_pred EEE
Q 000450 713 RVL 715 (1496)
Q Consensus 713 ~~l 715 (1496)
..-
T Consensus 330 ~~~ 332 (345)
T PF10282_consen 330 PVG 332 (345)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.23 E-value=0.02 Score=67.98 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=104.1
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCC-cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dg-tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
.+|.+.|.-..+.-+ ++-++-|..|+ .+-++|..+++. ..+...-+.|.++..+|+ |+.++.+
T Consensus 356 v~~~~~VrY~r~~~~---------~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~d------GK~~vva 419 (668)
T COG4946 356 VGKKGGVRYRRIQVD---------PEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPD------GKKVVVA 419 (668)
T ss_pred cCCCCceEEEEEccC---------CcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCC------CcEEEEE
Confidence 378888887777665 56788899999 899999987764 555667788999999999 8888888
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
-....+.+.|++++.....-....+-|+...|||++++++-+--+ |+.- ..|+++|+.+++....-
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~--gy~t--q~Iklydm~~~Kiy~vT 485 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE--GYYT--QSIKLYDMDGGKIYDVT 485 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc--ceee--eeEEEEecCCCeEEEec
Confidence 888899999999998765545556679999999999999987654 3333 68999999998876543
No 274
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.18 E-value=0.0033 Score=79.62 Aligned_cols=140 Identities=13% Similarity=0.178 Sum_probs=110.7
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-------
Q 000450 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS------- 598 (1496)
Q Consensus 526 ~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs------- 598 (1496)
..+.+|...|+|.+ .|..+.+.++++..|++.|..+..+ |++|+++|
T Consensus 188 r~lf~G~t~G~V~L---------------rD~~s~~~iht~~aHs~siSDfDv~-----------GNlLitCG~S~R~~~ 241 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFL---------------RDPNSFETIHTFDAHSGSISDFDVQ-----------GNLLITCGYSMRRYN 241 (1118)
T ss_pred cEEEeecccceEEe---------------ecCCcCceeeeeeccccceeeeecc-----------CCeEEEeeccccccc
Confidence 37889999999998 2455668899999999999977654 78899987
Q ss_pred --CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE---CCCC-cEEEEecCCCCCc
Q 000450 599 --MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS---LETL-RVERMFPGHPNYP 672 (1496)
Q Consensus 599 --~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd---l~~~-~~l~~~~gH~~~V 672 (1496)
.|.-|+|||++..+.+.-+.-+.++ .-+.|.|.- ...++.++..|...+-| +.+. --+.++..-...+
T Consensus 242 l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl-----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i 315 (1118)
T KOG1275|consen 242 LAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL-----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGI 315 (1118)
T ss_pred ccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc-----cceEEEEecccceeeccccccCCCccceeEEccCCCcc
Confidence 5678999999988887777777766 567788873 55788888999999998 4332 1234444445568
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 673 ~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
.+..+++.++.|+.|..+ |.|.+|-
T Consensus 316 ~~fDiSsn~~alafgd~~--------g~v~~wa 340 (1118)
T KOG1275|consen 316 SAFDISSNGDALAFGDHE--------GHVNLWA 340 (1118)
T ss_pred eeEEecCCCceEEEeccc--------CcEeeec
Confidence 999999999999999888 9999996
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.0053 Score=76.44 Aligned_cols=138 Identities=18% Similarity=0.122 Sum_probs=100.5
Q ss_pred ccCC-EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc-cC--cCCCEEEEEe
Q 000450 523 YAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK-GW--SFNEVLVSGS 598 (1496)
Q Consensus 523 f~P~-~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~-~~--~~~~~L~SGs 598 (1496)
++|. .+++|+.+- |.|+ |..+-+.++.+.-|...|+.+.|.|.....+ .+ ...-+++++.
T Consensus 23 w~~~GLiAygshsl-V~VV---------------Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 23 WSPSGLIAYGSHSL-VSVV---------------DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred cCccceEEEecCce-EEEE---------------ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 5555 567776543 4441 2334466788888999999999987531111 11 1244788888
Q ss_pred CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000450 599 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS-DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1496)
Q Consensus 599 ~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g-~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~ 677 (1496)
..|.|.+||...+..+..+..|..+|..+.|-|.. ++. +.++....-.++-+|+..+|+.+-..........++.+
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r---d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~ 163 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR---DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV 163 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc---CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee
Confidence 99999999999999999999999999999997762 234 57888888899999999999887666555555566666
Q ss_pred cC
Q 000450 678 DC 679 (1496)
Q Consensus 678 sp 679 (1496)
.|
T Consensus 164 DP 165 (1062)
T KOG1912|consen 164 DP 165 (1062)
T ss_pred CC
Confidence 66
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.10 E-value=0.0016 Score=72.13 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=64.1
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dgs 650 (1496)
.|++++-+|. ..++++.|+.||.+.+||.+..... ..++.|..+|+.+-|+|.. +..|.++++||+
T Consensus 181 ~v~~l~~hp~--------qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~-----p~~Lft~sedGs 247 (319)
T KOG4714|consen 181 AVTALCSHPA--------QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN-----PEHLFTCSEDGS 247 (319)
T ss_pred cchhhhCCcc--------cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC-----chheeEecCCCc
Confidence 4999999997 3678999999999999999987533 5678899999999999985 778999999999
Q ss_pred EEEEECCC
Q 000450 651 VALASLET 658 (1496)
Q Consensus 651 V~lWdl~~ 658 (1496)
+.-||-.+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999763
No 277
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.02 E-value=0.15 Score=61.62 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=111.1
Q ss_pred eEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCCCceeeeEEeecccc-----------ceeEeeeccccccccCccccc
Q 000450 18 RVTATSALTQPPTLYTGG-SDGSILWWSFSDSSYSEIKPVAMLCGHSA-----------PIADLSICYPAMVSRDGKAEH 85 (1496)
Q Consensus 18 ~Vtava~SpDg~~LaTGs-~DG~I~lWdl~~~~~~~~~~~~~L~GHt~-----------~Vt~La~c~~~~~s~dg~~~~ 85 (1496)
.-..++++||+++|+++. .+|.|.+++++. ++.+.....+..|.+ -..++.
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~--~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~--------------- 150 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDD--DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV--------------- 150 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSEEEEEEEEEESEEEESSTTTTSSTCEEEEE---------------
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccC--CcccceeeeecccCCCCCcccccccccceeEE---------------
Confidence 345789999999999886 689999999984 333332222222221 111222
Q ss_pred ccccccccccccccCCCCEEEEEeC-CCeEEEEECCCCe--EEE--eecCCCCCCCCcEEEEcCCCCeEEEEcccccccC
Q 000450 86 WKAENSSNVMGKSSLDNGALISACT-DGVLCVWSRSSGH--CRR--RRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTN 160 (1496)
Q Consensus 86 ~~~~~~~~~~g~~s~d~~~LaSas~-DG~l~VWdv~~G~--ci~--~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~ 160 (1496)
++||+++++.... ...|.+++++.+. ... ..+++. |..-.-..|+++++++.+-+.
T Consensus 151 ------------~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--G~GPRh~~f~pdg~~~Yv~~e----- 211 (345)
T PF10282_consen 151 ------------FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--GSGPRHLAFSPDGKYAYVVNE----- 211 (345)
T ss_dssp ------------E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--TSSEEEEEE-TTSSEEEEEET-----
T ss_pred ------------ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--CCCCcEEEEcCCcCEEEEecC-----
Confidence 5788887876543 4579999998654 422 234443 333333456666655443322
Q ss_pred CcccccccccccccccccccCCCCCCCCccEEEEEECC--c--eEEEEEEecC--ccccC-CeEEEEEeeccCCCCceeE
Q 000450 161 QLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTY--G--LTIVQTVFHG--NLSIG-PWKFMDVVSLGEDMGKHYG 233 (1496)
Q Consensus 161 ~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~--t--~~~l~~l~~~--~~s~~-~i~~l~~s~~~~d~~~~~l 233 (1496)
...+|.+++.. + .+.++++... ..... +...+.++ ||++ .+
T Consensus 212 ---------------------------~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is---pdg~--~l 259 (345)
T PF10282_consen 212 ---------------------------LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS---PDGR--FL 259 (345)
T ss_dssp ---------------------------TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE----TTSS--EE
T ss_pred ---------------------------CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe---cCCC--EE
Confidence 12566666655 3 3444444321 11111 45677777 5665 37
Q ss_pred EEE-eCCCcEEEEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCe
Q 000450 234 LMV-DSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDH 300 (1496)
Q Consensus 234 lva-s~dG~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~ 300 (1496)
+++ ...+.|.+++++... + .+..+.........-+.++++|+|+.|+.++.+.
T Consensus 260 yvsnr~~~sI~vf~~d~~~------g--------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 260 YVSNRGSNSISVFDLDPAT------G--------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp EEEECTTTEEEEEEECTTT------T--------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred EEEeccCCEEEEEEEecCC------C--------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 777 778999999995431 0 0111111111112247899999999999887543
No 278
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.001 Score=78.19 Aligned_cols=171 Identities=18% Similarity=0.182 Sum_probs=121.1
Q ss_pred cCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000450 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1496)
Q Consensus 507 ~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1496)
-|.+.|+.+...... .++.++.||.++. |.... ..--+.+..+..|-+.|.+++.+.+
T Consensus 7 mhrd~i~hv~~tka~-----fiiqASlDGh~KF--WkKs~----------isGvEfVKhFraHL~~I~sl~~S~d----- 64 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAK-----FIIQASLDGHKKF--WKKSR----------ISGVEFVKHFRAHLGVILSLAVSYD----- 64 (558)
T ss_pred cccceeeeEeeehhh-----eEEeeecchhhhh--cCCCC----------ccceeehhhhHHHHHHHHhhhcccc-----
Confidence 367777776533333 6899999999998 43100 0111344556677777777777665
Q ss_pred cCcCCCEEEEEeC-CCcEEEEECCCCc------------------------------------------------eEEEE
Q 000450 587 GWSFNEVLVSGSM-DCSIRIWDLGSGN------------------------------------------------LITVM 617 (1496)
Q Consensus 587 ~~~~~~~L~SGs~-DgtV~lWDl~tg~------------------------------------------------~l~~~ 617 (1496)
+.++.|++. |..++++|+.+-. ....-
T Consensus 65 ----g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 65 ----GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred ----ceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 677788776 8888888876321 01111
Q ss_pred cccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-Cc-----E---------EEEecCCCCCcEEEEEcCCCC
Q 000450 618 HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LR-----V---------ERMFPGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 618 ~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~-----~---------l~~~~gH~~~V~~V~~spdg~ 682 (1496)
.-|..+|.++.++|. +++++|....|.|..|..+. .+ . +..++.....+.++.|+|++.
T Consensus 141 klH~sPV~~i~y~qa------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~ 214 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQA------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA 214 (558)
T ss_pred ccccCceEEEEeecc------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence 248889999999998 89999999999999999872 11 1 122233455678999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
.+.+-..| ..|++++.++|++++.+..
T Consensus 215 qistl~~D--------rkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 215 QISTLNPD--------RKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cccccCcc--------cEEEEEEeccchhhhhhhc
Confidence 99988877 9999999999999887753
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.2 Score=58.70 Aligned_cols=205 Identities=11% Similarity=0.094 Sum_probs=119.1
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEEccCCCCCceeeeEEeeccccceeEe----eeccccccccCcccccccccccccc
Q 000450 20 TATSALTQPPTLYTGG-SDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADL----SICYPAMVSRDGKAEHWKAENSSNV 94 (1496)
Q Consensus 20 tava~SpDg~~LaTGs-~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~L----a~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1496)
+-+++++||++|+++. .-|.|.+.-+.. .+...+..-+.-|+++.-.- ..|+.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~--dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a------------------- 150 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQA--DGSLQPVVQVVKHTGSGPHERQESPHVHSA------------------- 150 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEccc--CCccccceeeeecCCCCCCccccCCcccee-------------------
Confidence 8899999999999985 568899999974 34333333344455541110 001222
Q ss_pred cccccCCCCEEEEEe--CCCeEEEEECCCCeEEEee--cCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccc
Q 000450 95 MGKSSLDNGALISAC--TDGVLCVWSRSSGHCRRRR--KLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFES 170 (1496)
Q Consensus 95 ~g~~s~d~~~LaSas--~DG~l~VWdv~~G~ci~~~--~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~ 170 (1496)
.+.||+++|++.. .| +|.++++++|++-... .+++ |.-..-..|+|+++++.+-+.
T Consensus 151 --~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~--G~GPRHi~FHpn~k~aY~v~E--------------- 210 (346)
T COG2706 151 --NFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKP--GAGPRHIVFHPNGKYAYLVNE--------------- 210 (346)
T ss_pred --eeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCC--CCCcceEEEcCCCcEEEEEec---------------
Confidence 2688999998874 45 6999999999865442 2232 443344567777776554332
Q ss_pred ccccccccccCCCCCCCCccEEEEEECCc--e--EEEEEE---ecCccccCCeEEEEEeeccCCCCceeEEEE-eCCCcE
Q 000450 171 VEGDLVSEDKEVPMKNPPKCTLVIVDTYG--L--TIVQTV---FHGNLSIGPWKFMDVVSLGEDMGKHYGLMV-DSVGRL 242 (1496)
Q Consensus 171 v~~~~~~~d~~~~~~~~~~~~I~v~D~~t--~--~~l~~l---~~~~~s~~~i~~l~~s~~~~d~~~~~llva-s~dG~V 242 (1496)
.+.+|.+|.-.. + +.++++ ...-....|..++.++ +||+- +++. -....|
T Consensus 211 -----------------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis---~dGrF--LYasNRg~dsI 268 (346)
T COG2706 211 -----------------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS---PDGRF--LYASNRGHDSI 268 (346)
T ss_pred -----------------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC---CCCCE--EEEecCCCCeE
Confidence 236777765443 2 333333 2222334566777877 56663 5555 334488
Q ss_pred EEEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeE
Q 000450 243 QLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC 301 (1496)
Q Consensus 243 ~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~ 301 (1496)
-++.++.... .+..+.........-+...|++.|+.|+....+.-
T Consensus 269 ~~f~V~~~~g--------------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 269 AVFSVDPDGG--------------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred EEEEEcCCCC--------------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 8888876521 11111111111112356778899998888766543
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.97 E-value=0.039 Score=75.80 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=84.1
Q ss_pred EEEEEEecCCCCcccCcCCC-EEEEEeCCCcEEEEECCCCceEEEEcc-------------c--------CCCEEEEEEC
Q 000450 573 VLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHH-------------H--------VAPVRQIILS 630 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~-~L~SGs~DgtV~lWDl~tg~~l~~~~~-------------H--------~~~V~~l~~s 630 (1496)
.+.++++|+ +. ++++-+.++.|++||+.++.......+ + -..-..++++
T Consensus 742 P~GIavspd---------G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 742 PSGISLSPD---------LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred ccEEEEeCC---------CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 457899987 44 777778889999999987653211100 0 0112477888
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------------CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000450 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 631 Pd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~-------------gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~ 697 (1496)
|+ |+.+++-..++.|++||..++....... ++-..+..|+++++|+.+++-+.+
T Consensus 813 ~d------G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------- 879 (1057)
T PLN02919 813 KD------GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------- 879 (1057)
T ss_pred CC------CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-------
Confidence 87 8899999999999999998877653321 112357899999999877766555
Q ss_pred CCEEEEEECCCCeE
Q 000450 698 VDVLFIWDVKTGAR 711 (1496)
Q Consensus 698 dg~V~VWDl~tg~~ 711 (1496)
++|++||+.+++.
T Consensus 880 -n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 -SLIRYLDLNKGEA 892 (1057)
T ss_pred -CEEEEEECCCCcc
Confidence 8999999999865
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.94 E-value=0.049 Score=60.97 Aligned_cols=147 Identities=10% Similarity=-0.083 Sum_probs=99.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCc--cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~--~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~ 604 (1496)
.+..++.|.++++...+. ...+. .-|.. .++++++++| +.++++-+....|.
T Consensus 130 ~~~i~sndht~k~~~~~~-------------~s~~~----~~h~~~~~~ns~~~snd---------~~~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSG-------------DSNKF----AVHNQNLTQNSLHYSND---------PSWGSSVGDSRRVF 183 (344)
T ss_pred ceeeccCCcceeEEEEec-------------Ccccc----eeeccccceeeeEEcCC---------CceEEEecCCCcce
Confidence 466677788888744431 11111 12333 3788999997 89999999999999
Q ss_pred EEECCCC-ceE-E-EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-----ecCCCCCcEEEE
Q 000450 605 IWDLGSG-NLI-T-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-----FPGHPNYPAKVV 676 (1496)
Q Consensus 605 lWDl~tg-~~l-~-~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~-----~~gH~~~V~~V~ 676 (1496)
.|.+... +.+ . ....-+..=.+..|+.. ...||++..||++.|||++.....+. -+.|.+.+..+.
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~s~~------~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~ 257 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSFSEN------DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCR 257 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeeeccC------cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEE
Confidence 9998753 222 2 22222334466778776 67999999999999999997654332 246888999999
Q ss_pred EcCCCC---EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 677 WDCPRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 677 ~spdg~---~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|+|-|. ++++-.. +.+.|-|++++.....
T Consensus 258 Fsl~g~lDLLf~sEhf---------s~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 258 FSLYGLLDLLFISEHF---------SRVHVVDTRNYVNHQV 289 (344)
T ss_pred ecCCCcceEEEEecCc---------ceEEEEEcccCceeeE
Confidence 997543 3333332 6899999999875443
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.89 E-value=2.8 Score=57.21 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=65.8
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce--------EEEEc----------ccCCCEEEEEECC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--------ITVMH----------HHVAPVRQIILSP 631 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~--------l~~~~----------~H~~~V~~l~~sP 631 (1496)
...|.+++|+++ +..++.-..|++|.+|....... ...+. .-...+..+.|..
T Consensus 426 ~~~v~~vaf~~~---------~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (928)
T PF04762_consen 426 PSPVNDVAFSPS---------NSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN 496 (928)
T ss_pred CCCcEEEEEeCC---------CCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC
Confidence 467999999986 55588888999999988543221 11111 1234567788766
Q ss_pred CCCCCCCCCEEEEEeCC---CcEEEEECCCCc---EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 632 PQTEHPWSDCFLSVGED---FSVALASLETLR---VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~D---gsV~lWdl~~~~---~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+ ...++....+ ..+.++++...+ .+.....-...+..+...++...++.-..| |.++..+
T Consensus 497 ~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~--------G~v~~~~ 562 (928)
T PF04762_consen 497 D------DTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTND--------GKVFQLS 562 (928)
T ss_pred C------CEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECC--------CEEEEee
Confidence 5 4444444443 567777774332 222222223445555555555445555555 7777554
Q ss_pred CC
Q 000450 706 VK 707 (1496)
Q Consensus 706 l~ 707 (1496)
..
T Consensus 563 ~~ 564 (928)
T PF04762_consen 563 SD 564 (928)
T ss_pred cC
Confidence 43
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.89 E-value=0.002 Score=79.40 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=97.7
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.....+.||+..|+.+-|+|.+ ...|++++.|..|..||+++.. ++..+......-.+|.|+-.. +
T Consensus 105 aIef~lhghsraitd~n~~~q~--------pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~-----p 171 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQH--------PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD-----P 171 (1081)
T ss_pred ceEEEEecCccceeccccCCCC--------CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC-----c
Confidence 4456678999999999999974 7899999999999999998765 445555555567889998762 4
Q ss_pred CEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCC-CCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 640 DCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spd-g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+.+++ +.-+.|.+||++.| .++..+.+|...|..+.|..- ...+.+.+.| ++|+.||.....
T Consensus 172 ~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d--------~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 172 NVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND--------GTVKFWDYSKST 235 (1081)
T ss_pred chhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC--------Cceeeecccccc
Confidence 45544 45567999999865 578899999999999888542 3345555555 999999986543
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.81 E-value=0.15 Score=70.29 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=82.2
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc---------------CCCEEEEEECCCCCCCCC
Q 000450 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH---------------VAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H---------------~~~V~~l~~sPd~~~~~~ 638 (1496)
..++++|+ .+.++++.+.++.|++||..++... .+.+. -.....++++|+
T Consensus 686 ~gVa~dp~--------~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd------ 750 (1057)
T PLN02919 686 WDVCFEPV--------NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPD------ 750 (1057)
T ss_pred eEEEEecC--------CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCC------
Confidence 57888885 2678888889999999999877542 22211 123456889998
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEEEecC---------------------CCCCcEEEEEcCCCCEEEEEEcCCCCCCC
Q 000450 639 SD-CFLSVGEDFSVALASLETLRVERMFPG---------------------HPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1496)
Q Consensus 639 g~-~l~Sgs~DgsV~lWdl~~~~~l~~~~g---------------------H~~~V~~V~~spdg~~L~tgs~D~sg~~D 696 (1496)
++ .+++-+.++.|++||++++.......+ .-..+..++++++|..+++-..+
T Consensus 751 G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------ 824 (1057)
T PLN02919 751 LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------ 824 (1057)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------
Confidence 66 666777889999999987654221110 11235689999999876666555
Q ss_pred CCCEEEEEECCCCeEEE
Q 000450 697 AVDVLFIWDVKTGARER 713 (1496)
Q Consensus 697 ~dg~V~VWDl~tg~~~~ 713 (1496)
++|++||..++....
T Consensus 825 --~rIrviD~~tg~v~t 839 (1057)
T PLN02919 825 --HKIKKLDPATKRVTT 839 (1057)
T ss_pred --CEEEEEECCCCeEEE
Confidence 899999998877653
No 285
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.78 E-value=0.0079 Score=74.07 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=63.5
Q ss_pred cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCC
Q 000450 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1496)
Q Consensus 620 H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg 699 (1496)
....|.+++++|+ ...++.|+.||+|.+||...+... +....-.++.++|+|+|.++++|+.- |
T Consensus 258 L~s~v~~ca~sp~------E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~q--------G 321 (545)
T PF11768_consen 258 LPSQVICCARSPS------EDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQ--------G 321 (545)
T ss_pred cCCcceEEecCcc------cceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCC--------c
Confidence 5668999999999 789999999999999998766433 22345668999999999999999988 9
Q ss_pred EEEEEECCCCeE
Q 000450 700 VLFIWDVKTGAR 711 (1496)
Q Consensus 700 ~V~VWDl~tg~~ 711 (1496)
.+.+||+.-...
T Consensus 322 elQ~FD~ALspi 333 (545)
T PF11768_consen 322 ELQCFDMALSPI 333 (545)
T ss_pred eEEEEEeecCcc
Confidence 999999965544
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.78 E-value=0.49 Score=57.54 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=84.4
Q ss_pred cCCccEEEEEEecCCCCcccCcCCC-EEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 568 GHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 568 gH~~~V~~La~spd~~~~~~~~~~~-~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
+-.++|...+|.|+ + .+ -+++|-++-++.++|++.. ..+.+ ..+.=..+.|+|. +++++.++
T Consensus 272 ~~~~pVhdf~W~p~-----S---~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~------~r~il~ag 334 (561)
T COG5354 272 DLKDPVHDFTWEPL-----S---SRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPH------ERYILFAG 334 (561)
T ss_pred cccccceeeeeccc-----C---CceeEEecccccceeecccccc-eEEec--CCcccccccccCc------ccEEEEec
Confidence 55789999999997 1 33 4566779999999999754 44444 3445577889998 88888876
Q ss_pred CC---CcEEEEECCCCcEE-EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 647 ED---FSVALASLETLRVE-RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 647 ~D---gsV~lWdl~~~~~l-~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
-| |.+-+||......+ ..+.+-. ..-+.|+||+.|+.+.... .--..|..|.|||+..
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts--~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTS--EKLRVDNSIKLWDVYG 396 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCC--cccccCcceEEEEecC
Confidence 55 78999998765443 3565443 3457899999998876531 1112347899999853
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.77 E-value=0.76 Score=56.15 Aligned_cols=109 Identities=11% Similarity=-0.013 Sum_probs=77.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
+..+..++.++.+..||..+|+.+...... ......+ . +..+..++.|+.+..+|..+++.+-.......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~------~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~ 310 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--D------DNRLYVTDADGVVVALDRRSGSELWKNDELKY 310 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--e------CCEEEEECCCCeEEEEECCCCcEEEccccccC
Confidence 456777888999999999999887665421 1111111 2 56777888999999999999988765532111
Q ss_pred -CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 671 -YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 671 -~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
....... .+..|++++.+ |.|++||..+|+.+..+.-+.
T Consensus 311 ~~~ssp~i--~g~~l~~~~~~--------G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 311 RQLTAPAV--VGGYLVVGDFE--------GYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred CccccCEE--ECCEEEEEeCC--------CEEEEEECCCCCEEEEEEcCC
Confidence 1111122 46788899888 999999999999988877554
No 288
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.70 E-value=0.0055 Score=75.36 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=63.2
Q ss_pred CcceeeeEecCCCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccC
Q 000450 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRD 80 (1496)
Q Consensus 1 ~~~~~~~~lw~~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~d 80 (1496)
|||-+|--+ |-...|+|++++|+...|+.|+.||+|++||... + ...+.-+.-..+.++
T Consensus 248 lqrvsvtsi----pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~---~----~t~~~ka~~~P~~ia---------- 306 (545)
T PF11768_consen 248 LQRVSVTSI----PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR---G----VTLLAKAEFIPTLIA---------- 306 (545)
T ss_pred eeEEEEEEE----ecCCcceEEecCcccceEEEEecCCeEEEEEcCC---C----eeeeeeecccceEEE----------
Confidence 345455444 4556799999999999999999999999999873 1 122222334456666
Q ss_pred cccccccccccccccccccCCCCEEEEEeCCCeEEEEECCCC
Q 000450 81 GKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSG 122 (1496)
Q Consensus 81 g~~~~~~~~~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~~G 122 (1496)
+.|++..++.|++-|+|.+||+.-.
T Consensus 307 -----------------WHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 307 -----------------WHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred -----------------EcCCCcEEEEEcCCceEEEEEeecC
Confidence 5778999999999999999998644
No 289
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.69 E-value=0.011 Score=68.01 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=112.9
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
..|+-.|.++.+.++.. .+++ ..|=.|.+|.+.... ...+.-|+ ++. .+..-+.-|++-.|||.+
T Consensus 161 NaHtyhiNSIS~NsD~E----t~lS-ADdLRINLWnlei~d---~sFnIVDI---KP~-nmEeLteVITsaEFhp~~--- 225 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKE----TFLS-ADDLRINLWNLEIID---QSFNIVDI---KPA-NMEELTEVITSAEFHPHH--- 225 (433)
T ss_pred ccceeEeeeeeecCccc----eEee-ccceeeeeccccccC---CceeEEEc---ccc-CHHHHHHHHhhhccCHhH---
Confidence 35777888988777765 4443 455555564333111 01111111 110 011123457888999974
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceE----------------EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLI----------------TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l----------------~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg 649 (1496)
..+++=.+..|+|++-|++...+. .-|..-...|..+.|++. |+++++-+. -
T Consensus 226 -----cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~s------GryilsRDy-l 293 (433)
T KOG1354|consen 226 -----CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS------GRYILSRDY-L 293 (433)
T ss_pred -----ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccC------CcEEEEecc-c
Confidence 678888888999999999843211 112223456889999998 899988743 6
Q ss_pred cEEEEEC-CCCcEEEEecCCCC------------Cc---EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 650 SVALASL-ETLRVERMFPGHPN------------YP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 650 sV~lWdl-~~~~~l~~~~gH~~------------~V---~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
+|++||+ ...+++.+++-|.. .| ..++|+.++.+++||+.. +..++++...|..
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~--------n~frvf~~~~gsk 363 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN--------NVFRVFNLARGSK 363 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc--------ceEEEecCCCCcc
Confidence 8999999 67788888877642 22 568999999999999988 8999999766653
No 290
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.57 E-value=0.0054 Score=69.81 Aligned_cols=114 Identities=12% Similarity=-0.003 Sum_probs=88.5
Q ss_pred EEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000450 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1496)
Q Consensus 576 La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd 655 (1496)
..|+|+ ++++++.+.- .+.|-|.++.+..+.|.. -..|.-+.|.-|. -.+++....|+.|.+|+
T Consensus 14 c~fSp~---------g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads-----~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 14 CSFSPC---------GNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADS-----CHILCVAYKDPKVQVWS 77 (447)
T ss_pred eeECCC---------CCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccc-----eeeeeeeeccceEEEEE
Confidence 367887 8999999865 788899888776555544 3467778888773 45677778899999999
Q ss_pred CCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 656 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 656 l~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
+...+--..+....+++.+++|||||+.++..+.- +-.|.||.+.|.+..
T Consensus 78 l~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF-------~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 78 LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEF-------DLRITVWSLNTQKGY 127 (447)
T ss_pred eecceeEEEeccCCCcceeeeECCCcceEeeeecc-------eeEEEEEEeccceeE
Confidence 98877777777777889999999999766654442 178999999887653
No 291
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.39 E-value=1.4 Score=51.93 Aligned_cols=247 Identities=16% Similarity=0.186 Sum_probs=130.6
Q ss_pred EEEEEeC----CCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccCCCCEE
Q 000450 30 TLYTGGS----DGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGAL 105 (1496)
Q Consensus 30 ~LaTGs~----DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d~~~L 105 (1496)
.++.|+. +..|.+|++++. .++..... +..+.+..+-|+ +++++++|
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~-~g~l~~~~-~v~~~~nptyl~---------------------------~~~~~~~L 54 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTK-TGELSLLQ-LVAELGNPTYLA---------------------------VNPDQRHL 54 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCc-ccccchhh-hccccCCCceEE---------------------------ECCCCCEE
Confidence 4555543 567999999842 22232222 345667777887 67888889
Q ss_pred EEEeC---CCeEEEEECC--CCeEEEe--ecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccccccc
Q 000450 106 ISACT---DGVLCVWSRS--SGHCRRR--RKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSE 178 (1496)
Q Consensus 106 aSas~---DG~l~VWdv~--~G~ci~~--~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~ 178 (1496)
.++-+ +|.+..+.++ +|++-.. ..++ |.|.+-..+.++++++.++.|.
T Consensus 55 Y~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~---g~~p~yvsvd~~g~~vf~AnY~---------------------- 109 (346)
T COG2706 55 YVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP---GSPPCYVSVDEDGRFVFVANYH---------------------- 109 (346)
T ss_pred EEEEecCCcCcEEEEEEcCCCCeEEEeeccccC---CCCCeEEEECCCCCEEEEEEcc----------------------
Confidence 88755 4677776665 4765433 3444 7776667888999888877761
Q ss_pred ccCCCCCCCCccEEEEEECCc-e---EEEEEEecC------ccccCCeEEEEEeeccCCCCceeEEEE-eCCCcEEEEEC
Q 000450 179 DKEVPMKNPPKCTLVIVDTYG-L---TIVQTVFHG------NLSIGPWKFMDVVSLGEDMGKHYGLMV-DSVGRLQLVPI 247 (1496)
Q Consensus 179 d~~~~~~~~~~~~I~v~D~~t-~---~~l~~l~~~------~~s~~~i~~l~~s~~~~d~~~~~llva-s~dG~V~lWdl 247 (1496)
.+.|.++-..+ + ..++.+.+. +.....+.+..|. |+++ .+++. -..-+|.++++
T Consensus 110 ----------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t---P~~~--~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 110 ----------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT---PDGR--YLVVPDLGTDRIFLYDL 174 (346)
T ss_pred ----------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC---CCCC--EEEEeecCCceEEEEEc
Confidence 14444443332 1 112222221 1011113444444 5655 23333 33447889999
Q ss_pred CCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEE--eCCeEEEEEcCCCcccceeeeecceeEee
Q 000450 248 SKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALV--LKDHCIFRLLGSGSTIGEICFVDNLFCLE 325 (1496)
Q Consensus 248 ~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~--~~~~~~~~l~d~~~~ige~~~~~~~l~~~ 325 (1496)
+.+.+. . ..+. .+ . ...+-+-|.|.|+|++.-++ ..+...++-++.. .+++.-...+.+..
T Consensus 175 ~dg~L~----~--~~~~--~v-----~--~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP 237 (346)
T COG2706 175 DDGKLT----P--ADPA--EV-----K--PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLP 237 (346)
T ss_pred ccCccc----c--cccc--cc-----C--CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCc
Confidence 865310 0 0000 01 1 22455889999999876554 4566566444543 34443222222222
Q ss_pred CCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCc--EEEEEEecC
Q 000450 326 GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGS--AIVYAISYM 378 (1496)
Q Consensus 326 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~--~~l~~l~~~ 378 (1496)
..-.+..+....-+.. +++|+..+..|. +.+|.+...
T Consensus 238 ~dF~g~~~~aaIhis~----------------dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 238 EDFTGTNWAAAIHISP----------------DGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred cccCCCCceeEEEECC----------------CCCEEEEecCCCCeEEEEEEcCC
Confidence 3333334445544444 346766666654 444555433
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.35 E-value=0.18 Score=60.32 Aligned_cols=146 Identities=13% Similarity=0.124 Sum_probs=107.1
Q ss_pred cCCccEEEEEeeccccccCCEEEEEEcCC-cEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 507 HKEKIVSSSMVISESFYAPYAIVYGFFSG-EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 507 ~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG-~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
+|.+.|.-..+..+. ..++.|..|| .+.|+..+ +++ ...+.+.-+.|.++..+++
T Consensus 357 ~~~~~VrY~r~~~~~----e~~vigt~dgD~l~iyd~~---------------~~e-~kr~e~~lg~I~av~vs~d---- 412 (668)
T COG4946 357 GKKGGVRYRRIQVDP----EGDVIGTNDGDKLGIYDKD---------------GGE-VKRIEKDLGNIEAVKVSPD---- 412 (668)
T ss_pred CCCCceEEEEEccCC----cceEEeccCCceEEEEecC---------------Cce-EEEeeCCccceEEEEEcCC----
Confidence 455666665544333 3799999999 66673332 333 3556666788999999997
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC----CcEEEEECCCCcE
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED----FSVALASLETLRV 661 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D----gsV~lWdl~~~~~ 661 (1496)
+..++.+...+.+-+.|+.+|+....=+...+-|+...|+|+ ++.+|-+--+ ..|+++|+.+++.
T Consensus 413 -----GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n------sr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 413 -----GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN------SRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred -----CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC------ceeEEEecCcceeeeeEEEEecCCCeE
Confidence 899999988889999999999977666667788999999999 8888876555 4789999998886
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEE
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYIACLC 688 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L~tgs 688 (1496)
...-. ..+.=.+-+|.||+++|.-.+
T Consensus 482 y~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 YDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEecC-CcccccCcccCCCCcEEEEEe
Confidence 54432 122223568999999887654
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=0.0038 Score=78.23 Aligned_cols=131 Identities=21% Similarity=0.204 Sum_probs=100.5
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
++.+++..|+...+|++|+-+ .++|+.|+..|.|+++++.+|.......+|..+|+-+.=+.+ |.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d------gs 1156 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD------GS 1156 (1516)
T ss_pred ccchhhhccccceeeEEeecC---------CceEEeeeccceEEEEEccCccccccccccccccccccccCC------cc
Confidence 455677889999999999976 789999999999999999999999999999999999887777 66
Q ss_pred EEEEEeC-CC-cEEEEECC-CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE-Ee
Q 000450 641 CFLSVGE-DF-SVALASLE-TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LR 716 (1496)
Q Consensus 641 ~l~Sgs~-Dg-sV~lWdl~-~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~-l~ 716 (1496)
..++.+. .. -..+|++. .+...++|.+ -.+++|+..-.+-+.|+.- ....|||++|+..+.+ ++
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~--------d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEA--------DDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred eeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccc--------cceEEEecccCcHHHHhcC
Confidence 5554443 33 57899985 3555566543 3478898765555555554 4789999999987666 44
Q ss_pred CC
Q 000450 717 GT 718 (1496)
Q Consensus 717 gh 718 (1496)
+.
T Consensus 1225 ~~ 1226 (1516)
T KOG1832|consen 1225 DT 1226 (1516)
T ss_pred cc
Confidence 43
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.19 E-value=0.0049 Score=69.51 Aligned_cols=129 Identities=16% Similarity=0.226 Sum_probs=91.9
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce---EEEEccc-----CCCEEEEEECCCCCCCCC
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL---ITVMHHH-----VAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~---l~~~~~H-----~~~V~~l~~sPd~~~~~~ 638 (1496)
..|.--++++.|+.| .+.++|+ .|-.|.+|++..... +..++.| +.-|++..|+|..
T Consensus 169 NaH~yhiNSiS~NsD---------~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~----- 233 (460)
T COG5170 169 NAHPYHINSISFNSD---------KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM----- 233 (460)
T ss_pred ccceeEeeeeeecCc---------hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH-----
Confidence 567778999999886 6777776 588999999875431 2233333 3457888999985
Q ss_pred CCEEEEEeCCCcEEEEECCCCcE-E---EE------------ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEE
Q 000450 639 SDCFLSVGEDFSVALASLETLRV-E---RM------------FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~-l---~~------------~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~ 702 (1496)
...|.-.+..|.|++-|++.... . .. |.+-...|..+.|++.|+|+++-.. -+|+
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---------ltvk 304 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---------LTVK 304 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---------ceEE
Confidence 56788888899999999983211 0 11 1222346788999999999987655 4999
Q ss_pred EEECCCC-eEEEEEeCCC
Q 000450 703 IWDVKTG-ARERVLRGTA 719 (1496)
Q Consensus 703 VWDl~tg-~~~~~l~gh~ 719 (1496)
|||+... .++.++.-|.
T Consensus 305 iwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 305 IWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred EEecccccCCceeechHH
Confidence 9999764 5677766554
No 295
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.19 E-value=0.19 Score=60.42 Aligned_cols=103 Identities=11% Similarity=0.028 Sum_probs=80.6
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEE-EEe---------CCCcEEEEECCCCcEEEEecCCC-
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-SVG---------EDFSVALASLETLRVERMFPGHP- 669 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~-Sgs---------~DgsV~lWdl~~~~~l~~~~gH~- 669 (1496)
++|.+.|..+++.+..+..-..+-. + ++|| ++.+. +.+ .+..|.+||..+++.+..++.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spD------g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASD------GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCC------CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 8899999999999888876544433 4 9999 66544 444 58899999999999998886422
Q ss_pred ------CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 670 ------NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 670 ------~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
.....++++|||++|++...+ .+..|.|.|+.+++.+.++.-
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~------p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFS------PSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCC------CCCEEEEEECCCCcEEEEEeC
Confidence 234578999999999987643 238999999999999988765
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.16 E-value=0.09 Score=58.94 Aligned_cols=146 Identities=13% Similarity=0.047 Sum_probs=95.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcc-eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV-SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~-~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
.|+.|+..|...+|... +.+ ..+....|...|+-+.=..+. .--+.-++.|.++++
T Consensus 86 ~la~gG~~g~fd~~~~~---------------tn~~h~~~cd~snn~v~~~~r~cd~--------~~~~~i~sndht~k~ 142 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACN---------------TNDGHLYQCDVSNNDVTLVKRYCDL--------KFPLNIASNDHTGKT 142 (344)
T ss_pred EEEeccccceeeeeccc---------------Ccccceeeecccccchhhhhhhccc--------ccceeeccCCcceeE
Confidence 78889899999984332 111 122223344444322211120 234566789999999
Q ss_pred EECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cE-EEEe-cCCCCCcEEEEEcCCCC
Q 000450 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RV-ERMF-PGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~-l~~~-~gH~~~V~~V~~spdg~ 682 (1496)
.++.-+..........-.+.++.++++ +...++++....|-.|.+... +. +... ....+.=.+..|+....
T Consensus 143 ~~~~~~s~~~~~h~~~~~~ns~~~snd------~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 143 MVVSGDSNKFAVHNQNLTQNSLHYSND------PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL 216 (344)
T ss_pred EEEecCcccceeeccccceeeeEEcCC------CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc
Confidence 998755433222222123788999999 899999999999999998643 22 2312 22233346789999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
.++++..| |++.|||++.-
T Consensus 217 ~FAv~~Qd--------g~~~I~DVR~~ 235 (344)
T KOG4532|consen 217 QFAVVFQD--------GTCAIYDVRNM 235 (344)
T ss_pred eEEEEecC--------CcEEEEEeccc
Confidence 99999999 99999999863
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.013 Score=68.66 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=77.0
Q ss_pred EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000450 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 603 V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~ 682 (1496)
|++.+-.+.+....+..|...|..++|+|.. ..++..++.+..|+|.|+++..++.++..| ..+++++|.-|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~-----~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFN-----EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccc-----cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc
Confidence 6666666666566777888999999999983 337889999999999999999999999888 7899999987765
Q ss_pred -EEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 683 -YIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 683 -~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+|..|-.+ |.|+|||++.-+
T Consensus 249 h~IYaGl~n--------G~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQN--------GMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccC--------ceEEEEEccCCC
Confidence 66666665 999999998643
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.06 E-value=0.47 Score=58.96 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=81.0
Q ss_pred cEEEEEEecCCCCcccCcCCC-EEEEEeC---CCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEE-EEEe
Q 000450 572 AVLCLAAHRMVGTAKGWSFNE-VLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF-LSVG 646 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~-~L~SGs~---DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l-~Sgs 646 (1496)
......|+|| ++ .++-.+. +..|.++|+.+|+...... ..+......|+|| |+.+ ++.+
T Consensus 189 ~~~~p~wSpD---------G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD------G~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANK---------EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD------GSKLLLTMA 252 (419)
T ss_pred CeEeEEECCC---------CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC------CCEEEEEEc
Confidence 6778899998 55 3553333 3579999999887654433 4556677889999 6644 4444
Q ss_pred CC--CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 647 ED--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 647 ~D--gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+ ..|.++|+.+++..+ +..+........|+|||+.|+..+.. .+...|++.|+.+|+..+..
T Consensus 253 ~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr-----~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDR-----LGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred cCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECC-----CCCceEEEEECCCCCeEeCc
Confidence 34 567778888876543 33333323456899999988876643 11147999999988875544
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.04 E-value=0.18 Score=56.89 Aligned_cols=112 Identities=13% Similarity=-0.023 Sum_probs=79.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEE-EEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQ-IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGH 668 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~-l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-~gH 668 (1496)
+..++.++.++.+..||..+|+.+..+.... ++.. ... . +..++.++.|+.+..+|.++|+.+... ...
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~--~------~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVV--D------GGRVYVGTSDGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEE--E------TTEEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeee--c------ccccccccceeeeEecccCCcceeeeecccc
Confidence 5677777899999999999999988776522 2111 111 2 456777778899999999999998774 322
Q ss_pred CC---CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 669 PN---YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 669 ~~---~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
.. .........+++.+++++.+ +.|+.+|+++|+.+.....+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~--------g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVDGDRLYVGTSS--------GKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp SCTCSTB--SEEEEETTEEEEEETC--------SEEEEEETTTTEEEEEEESST
T ss_pred ccccccccccCceEecCEEEEEecc--------CcEEEEecCCCcEEEEeecCC
Confidence 11 11222233347888888877 999999999999988887744
No 300
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.01 E-value=1.4 Score=54.85 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=79.3
Q ss_pred CCccEEEEEEecCCCCcccCcCCC-EEEEEeCC--CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~-~L~SGs~D--gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
..+.+....|+|| ++ ++++.+.+ ..|.++|+.+++. ..+..+.+......|+|| |+.++-.
T Consensus 231 ~~g~~~~~~~SPD---------G~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPD------G~~I~F~ 294 (419)
T PRK04043 231 SQGMLVVSDVSKD---------GSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVED------DKRIVFV 294 (419)
T ss_pred CCCcEEeeEECCC---------CCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCC------CCEEEEE
Confidence 4555667889998 54 55555444 4677788887764 444444433345679999 7766555
Q ss_pred eC-CC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCC-CCCCEEEEEECCCCeEEEEEeC
Q 000450 646 GE-DF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS-DAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 646 s~-Dg--sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~-D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
+. .+ .|.++|+.+++..+.... ... ...|+|||++|+..+..-.... .+...|++.|+.+|+. +.++.
T Consensus 295 Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~ 366 (419)
T PRK04043 295 SDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTA 366 (419)
T ss_pred ECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCC
Confidence 43 23 677888888877443321 111 2489999999987765410000 0114789999988865 44443
No 301
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.87 E-value=0.02 Score=43.05 Aligned_cols=38 Identities=34% Similarity=0.478 Sum_probs=33.5
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEE
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWD 607 (1496)
++...+..|...|+++.|++. +..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD---------GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC---------CCEEEEecCCCeEEEcC
Confidence 456677889999999999986 68999999999999996
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.83 E-value=0.1 Score=66.87 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC---------CCcEEEEECCCCcE
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE---------DFSVALASLETLRV 661 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~---------DgsV~lWdl~~~~~ 661 (1496)
++.+..|...|+|.+-|.++.+.+++|..|++.|..+... |+.++++|. |..|+|||++..+.
T Consensus 187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--------GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--------GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred CcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--------CCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 6899999999999999999999999999999999887764 678888864 77899999999887
Q ss_pred EEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 662 ERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
+.-+.-+.+ ..-+.|+|.- ..+++.+.. |...+-|.
T Consensus 259 l~PI~~~~~-P~flrf~Psl~t~~~V~S~s--------Gq~q~vd~ 295 (1118)
T KOG1275|consen 259 LSPIQFPYG-PQFLRFHPSLTTRLAVTSQS--------GQFQFVDT 295 (1118)
T ss_pred cCCcccccC-chhhhhcccccceEEEEecc--------cceeeccc
Confidence 765554444 3557788853 355666655 78888774
No 303
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.82 E-value=0.021 Score=42.81 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=34.3
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
++++..+..|...|.++.|.+++.++++++.| +.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d--------~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDD--------GTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCC--------CeEEEcC
Confidence 45667777899999999999999999999998 9999996
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.80 E-value=1.1 Score=50.33 Aligned_cols=103 Identities=18% Similarity=0.113 Sum_probs=72.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCC----------E-EEEEECCCCCCCCCCCEEEEEeCCCc-EEEEECCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP----------V-RQIILSPPQTEHPWSDCFLSVGEDFS-VALASLET 658 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~----------V-~~l~~sPd~~~~~~g~~l~Sgs~Dgs-V~lWdl~~ 658 (1496)
+..++.+..++.|..+|+++|+.+.....+..+ + ..+.+. + + .+..++.++. +.+ |+.+
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~-~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D------G-RVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T------T-EEEEECCTSSEEEE-ETTT
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C------C-EEEEEcCCCeEEEE-ECCC
Confidence 577788888999999999999998887764432 1 222222 3 4 6666666775 666 9999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
++.+-... ...+.. ...+++..|++++.+ +.|+.||++||+..-
T Consensus 193 g~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~--------~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 193 GEKLWSKP--ISGIYS-LPSVDGGTLYVTSSD--------GRLYALDLKTGKVVW 236 (238)
T ss_dssp TEEEEEEC--SS-ECE-CEECCCTEEEEEETT--------TEEEEEETTTTEEEE
T ss_pred CCEEEEec--CCCccC-CceeeCCEEEEEeCC--------CEEEEEECCCCCEEe
Confidence 99665433 222222 145678888888877 999999999999764
No 305
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.055 Score=65.70 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=87.3
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC------
Q 000450 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------ 647 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~------ 647 (1496)
+-+.|+|. |.+|+|--.-| |.+|-=.+...++.|. |. .|.-+.|||. .++|+|=|.
T Consensus 214 tyv~wSP~---------GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~------EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 214 TYVRWSPK---------GTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPN------EKYLVTYSPEPIIVE 275 (698)
T ss_pred eeEEecCC---------ceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCc------cceEEEecCCccccC
Confidence 56789997 89999987665 8899887777788884 55 4899999998 788888542
Q ss_pred -----CCcEEEEECCCCcEEEEecCCCC--Cc-EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 648 -----DFSVALASLETLRVERMFPGHPN--YP-AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 648 -----DgsV~lWdl~~~~~l~~~~gH~~--~V-~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
-..++|||+.+|...+.|+.-.. .+ .-..||.|++|++.-..| +|.|++..+..+
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~---------sisIyEtpsf~l 338 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN---------SISIYETPSFML 338 (698)
T ss_pred cccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc---------eEEEEecCceee
Confidence 26899999999999998875322 22 346899999999987765 899999876444
No 306
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.70 E-value=14 Score=50.62 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=61.1
Q ss_pred eEecCCC---CCCceEEEEEEcCCCCEEEEEeCCCcEEEE----EccCCCCCceeeeEEeeccccceeEeeecccccccc
Q 000450 7 ACIWSGT---PPSHRVTATSALTQPPTLYTGGSDGSILWW----SFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSR 79 (1496)
Q Consensus 7 ~~lw~~~---~psh~Vtava~SpDg~~LaTGs~DG~I~lW----dl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~ 79 (1496)
.+=|... .+...|.++.+.+|...|+.+.++|.|.+. |... .....+. --..+|.|.+
T Consensus 63 l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~---~~~E~VG---~vd~GI~a~~--------- 127 (928)
T PF04762_consen 63 LASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE---DEIEIVG---SVDSGILAAS--------- 127 (928)
T ss_pred EEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC---ceeEEEE---EEcCcEEEEE---------
Confidence 3346544 456789999999999999999999999999 5442 2233222 2345788888
Q ss_pred CcccccccccccccccccccCCCCEEEEEeCCCeEEEEECC
Q 000450 80 DGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRS 120 (1496)
Q Consensus 80 dg~~~~~~~~~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~ 120 (1496)
+|||+..|+-++.+|+|.+-+.+
T Consensus 128 ------------------WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 128 ------------------WSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred ------------------ECCCcCEEEEEeCCCEEEEEecc
Confidence 68999999999999999887643
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.1 Score=62.11 Aligned_cols=207 Identities=16% Similarity=0.143 Sum_probs=126.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccc
Q 000450 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1496)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g 96 (1496)
.-|+.+..+-- +++.+++.||.++.|--... .-..-+..+..|-+.|..|+
T Consensus 10 d~i~hv~~tka-~fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~-------------------------- 60 (558)
T KOG0882|consen 10 DVITHVFPTKA-KFIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLA-------------------------- 60 (558)
T ss_pred ceeeeEeeehh-heEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhh--------------------------
Confidence 34777776644 79999999999999987621 11233444567888888886
Q ss_pred cccCCCCEEEEEeC-CCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCC---eEEEEcccccccCCccccccccccc
Q 000450 97 KSSLDNGALISACT-DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP---RYVCIGCCFIDTNQLSDHHSFESVE 172 (1496)
Q Consensus 97 ~~s~d~~~LaSas~-DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~---~ll~~G~~~id~~~l~~~~~~~~v~ 172 (1496)
.+-|+..+.|.+. |..+++.|+.+-..+.-.++. .-|..+.-....+ .+++++.. +
T Consensus 61 -~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~---~lPg~a~wv~skGd~~s~IAVs~~--~-------------- 120 (558)
T KOG0882|consen 61 -VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV---DLPGFAEWVTSKGDKISLIAVSLF--K-------------- 120 (558)
T ss_pred -ccccceeEeeccCcccceeEEEeeccchhhhcccc---cCCCceEEecCCCCeeeeEEeecc--c--------------
Confidence 5677888999888 999999999877666555665 4455554333222 35555543 0
Q ss_pred ccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCc
Q 000450 173 GDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESH 252 (1496)
Q Consensus 173 ~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~ 252 (1496)
.+.|.++|.+..-.-...+- ..+-.+|..+-+.+.. +..+..+..|+|+-|..+..
T Consensus 121 ----------------sg~i~VvD~~~d~~q~~~fk-klH~sPV~~i~y~qa~-----Ds~vSiD~~gmVEyWs~e~~-- 176 (558)
T KOG0882|consen 121 ----------------SGKIFVVDGFGDFCQDGYFK-KLHFSPVKKIRYNQAG-----DSAVSIDISGMVEYWSAEGP-- 176 (558)
T ss_pred ----------------CCCcEEECCcCCcCccceec-ccccCceEEEEeeccc-----cceeeccccceeEeecCCCc--
Confidence 26677787775442222222 2333457777777543 33555588999999998742
Q ss_pred cccccCCCc--ccCC-CccceeeeccCcccCceEEEEecCCcEEEEEeCCe
Q 000450 253 LDREEGNGL--CKSS-SQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDH 300 (1496)
Q Consensus 253 ~~~~~~~~l--~~~e-k~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~ 300 (1496)
.+..+..-. +++| ...+..++. ....++.|+|+|..+.+.+.++
T Consensus 177 ~qfPr~~l~~~~K~eTdLy~f~K~K----t~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHETDLYGFPKAK----TEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred ccCccccccccccccchhhcccccc----cCccceEEccccCcccccCccc
Confidence 001111111 1111 111111111 2235788999999999988765
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.54 E-value=0.0085 Score=75.34 Aligned_cols=162 Identities=16% Similarity=0.192 Sum_probs=109.0
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
+|..|...-+|.++..... .++.|+..|.|++++ +.+|.-.....+|..+|+-+.-+-+
T Consensus 1096 ~frd~~~~fTc~afs~~~~----hL~vG~~~Geik~~n---------------v~sG~~e~s~ncH~SavT~vePs~d-- 1154 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTN----HLAVGSHAGEIKIFN---------------VSSGSMEESVNCHQSAVTLVEPSVD-- 1154 (1516)
T ss_pred hhhccccceeeEEeecCCc----eEEeeeccceEEEEE---------------ccCccccccccccccccccccccCC--
Confidence 3566777888888665554 899999999999944 3456666777899999998876655
Q ss_pred CcccCcCCCE-EEEEeCCC-cEEEEECC-CCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000450 584 TAKGWSFNEV-LVSGSMDC-SIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1496)
Q Consensus 584 ~~~~~~~~~~-L~SGs~Dg-tV~lWDl~-tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~ 660 (1496)
+.. |.+.+... -..+|++. ++...|+|... .++.|+... ...++.. .-..+.+||++++.
T Consensus 1155 -------gs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~-----q~r~~gt-~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1155 -------GSTQLTSSSSSSPLSALWDASSTGGPRHSFDED----KAVKFSNSL-----QFRALGT-EADDALLYDVQTCS 1217 (1516)
T ss_pred -------cceeeeeccccCchHHHhccccccCcccccccc----ceeehhhhH-----HHHHhcc-cccceEEEecccCc
Confidence 444 44443333 57799986 46667777653 457776541 2223333 23458899999998
Q ss_pred EEEEe-cCC---CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 661 VERMF-PGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 661 ~l~~~-~gH---~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++.++ .+- ...-+.+.|+|++..++ +| | .+||++..+.++.+.
T Consensus 1218 ~l~tylt~~~~~~y~~n~a~FsP~D~LIl---------nd--G--vLWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1218 PLQTYLTDTVTSSYSNNLAHFSPCDTLIL---------ND--G--VLWDVRIPEAIHRFD 1264 (1516)
T ss_pred HHHHhcCcchhhhhhccccccCCCcceEe---------eC--c--eeeeeccHHHHhhhh
Confidence 87663 321 12236789999998887 12 4 579998877666554
No 309
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.54 E-value=0.35 Score=59.06 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=72.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
+..++.++.|+.+..+|..+|+.+....... .+. -+|- ..+..++.++.|+.+..||.++|+.+-.+.....
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~---~~p~----v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVL---SPPL----VANGLVVVRTNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eee---cCCE----EECCEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence 5677788889999999999999887665432 222 1121 0134677778899999999999998766643322
Q ss_pred Cc-----EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 671 YP-----AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 671 ~V-----~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.. ..... .+..++.+..+ +.++.+|.++|+.+...
T Consensus 177 ~~~~~~~~sp~~--~~~~v~~~~~~--------g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 177 ALTLRGSASPVI--ADGGVLVGFAG--------GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred ceeecCCCCCEE--ECCEEEEECCC--------CEEEEEEccCCCEeeee
Confidence 11 01111 13467777776 89999999999876543
No 310
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.064 Score=66.39 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE-EEEEcCCCCEEEEEEcCCCCCCCCCCE
Q 000450 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1496)
Q Consensus 622 ~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~-~V~~spdg~~L~tgs~D~sg~~D~dg~ 700 (1496)
..|..+.|+|. -..+|.+-.+|.|.+..+. .+.+-+++-|.-.++ +++|.|||+.|++|-.| |+
T Consensus 21 ~~i~~~ewnP~------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd--------G~ 85 (665)
T KOG4640|consen 21 INIKRIEWNPK------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD--------GT 85 (665)
T ss_pred cceEEEEEcCc------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecC--------Ce
Confidence 35788999998 7899999999999999888 777788887777776 99999999999999999 99
Q ss_pred EEEEECCCCeEEEE
Q 000450 701 LFIWDVKTGARERV 714 (1496)
Q Consensus 701 V~VWDl~tg~~~~~ 714 (1496)
|++-|+++|..+..
T Consensus 86 I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEEccCCCceec
Confidence 99999999887654
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.28 E-value=1.8 Score=49.76 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=53.2
Q ss_pred CCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCc---eeeeEEeec-cccceeEeeeccccccccCccccccc
Q 000450 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSE---IKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWK 87 (1496)
Q Consensus 12 ~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~---~~~~~~L~G-Ht~~Vt~La~c~~~~~s~dg~~~~~~ 87 (1496)
++.|.-+=..+++|||+..||-+...|+|.++|+.. .+ +.|...+.| -+.+|..+.|+..- ...+|.
T Consensus 39 pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g---~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~------~s~~ws 109 (282)
T PF15492_consen 39 PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG---SELFVIPPAMSFPGDLSDAIAGLIFLEYK------KSAQWS 109 (282)
T ss_pred CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc---ceeEEcCcccccCCccccceeeeEeeccc------cccccc
Confidence 344444567889999999999999999999999972 22 122111222 13466777653332 113444
Q ss_pred ccccccccccccCCCCEEEEEeCCCeEEEEECC
Q 000450 88 AENSSNVMGKSSLDNGALISACTDGVLCVWSRS 120 (1496)
Q Consensus 88 ~~~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~ 120 (1496)
.+ |+.-..+|.++-.-+.
T Consensus 110 ~E---------------Llvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 110 YE---------------LLVINYRGQLRSYLVS 127 (282)
T ss_pred ee---------------EEEEeccceeeeEEEE
Confidence 44 6677778888766654
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=1 Score=57.99 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=87.5
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC----CCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG----SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~----tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
..++.+++++.+ -..+|.|-.||.|.++.=+ .|....-...-..+|+.+.+.-+ +..++-+
T Consensus 125 ~~p~s~l~Vs~~---------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d------~~s~lFv 189 (933)
T KOG2114|consen 125 PSPASSLAVSED---------LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD------GKSVLFV 189 (933)
T ss_pred CCcceEEEEEcc---------ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC------CceeEEE
Confidence 346888999886 6889999999999987522 12222222334579999999887 5553444
Q ss_pred eCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCC
Q 000450 646 GEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTAS 720 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~-l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~-gh~a 720 (1496)
..-..|.+|.+....+ +..+..|...+.|..+++...-+++++. .-+++||......-..+. ||..
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC---------ceEEEEcCCCcceeeeecCCCeE
Confidence 5556799999984442 4556778888999999876664665554 479999987544444444 7774
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.027 Score=66.16 Aligned_cols=124 Identities=13% Similarity=0.051 Sum_probs=92.1
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.++.+.+.+|...|..++|+|.. ..++..++.+.+|+|.|+++......+..| ..+++++|.-++ .
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~--------~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-----~ 248 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFN--------EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-----R 248 (463)
T ss_pred cchhhcccccchhhhhhccCccc--------cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-----c
Confidence 34455778888999999999962 458999999999999999999999999888 789999998885 7
Q ss_pred CEEEEEeCCCcEEEEECCCCcE-EEEecC--CCCCcEEE------EEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 640 DCFLSVGEDFSVALASLETLRV-ERMFPG--HPNYPAKV------VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~-l~~~~g--H~~~V~~V------~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+.+..|-..|.|.+||++..+- +..+.+ ...+|..+ +..+.|.+|+....+ +..|++.
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~----------l~f~ei~ 315 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV----------LQFYEIV 315 (463)
T ss_pred ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh----------hhhhhhh
Confidence 7999999999999999986432 222221 12233332 334556777766654 5677664
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.16 E-value=4.5 Score=46.19 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=86.7
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCC--------CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCE
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--------CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~D--------gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
....+.+++.++ +.+.++.... +.|..++.. ++.... ...-...+.++|+|+ ++.
T Consensus 85 ~~~~ND~~vd~~---------G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi~~s~d------g~~ 147 (246)
T PF08450_consen 85 FNRPNDVAVDPD---------GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGIAFSPD------GKT 147 (246)
T ss_dssp TEEEEEEEE-TT---------S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEEEEETT------SSE
T ss_pred cCCCceEEEcCC---------CCEEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccceEECCc------chh
Confidence 356789999997 7877776644 457777776 554333 333456789999999 665
Q ss_pred E-EEEeCCCcEEEEECCCC-c------EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 642 F-LSVGEDFSVALASLETL-R------VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 642 l-~Sgs~DgsV~lWdl~~~-~------~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
| ++-+..+.|..+++... . ....+..-.+.+-.+++..+|++.++.... +.|.++|.+ |+++.
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~--------~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG--------GRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT--------TEEEEEETT-SCEEE
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC--------CEEEEECCC-ccEEE
Confidence 4 56677888999998532 1 222233333347889999999877665555 899999987 99888
Q ss_pred EEeCCCCCceeeee
Q 000450 714 VLRGTASHSMFDHF 727 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~ 727 (1496)
.+.-.....+.+.|
T Consensus 219 ~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 219 EIELPVPRPTNCAF 232 (246)
T ss_dssp EEE-SSSSEEEEEE
T ss_pred EEcCCCCCEEEEEE
Confidence 87766444444433
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=1.9 Score=55.61 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=65.4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccc-eeEeeeccccccccCcccccccccccccccccccCC
Q 000450 23 SALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAP-IADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLD 101 (1496)
Q Consensus 23 a~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~-Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d 101 (1496)
.+++.+..+|-|+.||.|.+.|-. .....-+..|... |+.|- ...+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s------~~~~~~fqa~~~siv~~L~---------------------------~~~~ 76 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS------FQLIRGFQAYEQSIVQFLY---------------------------ILNK 76 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc------ceeeehheecchhhhhHhh---------------------------cccC
Confidence 356788999999999999888765 3333444455555 44443 2334
Q ss_pred CCEEEEEeCCCe-----EEEEECCC------CeEE---Eee--cCCCCCCCCcEEEEcCCCCeEEEEccc
Q 000450 102 NGALISACTDGV-----LCVWSRSS------GHCR---RRR--KLPPWVGSPSVICTLPSNPRYVCIGCC 155 (1496)
Q Consensus 102 ~~~LaSas~DG~-----l~VWdv~~------G~ci---~~~--~l~~~~g~~~~i~~~s~~~~ll~~G~~ 155 (1496)
..+|+|.++|++ |+|||+.. .+|+ +.. +.| --..|..+.+.+.+-..++||..
T Consensus 77 ~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np-~~~~p~s~l~Vs~~l~~Iv~Gf~ 145 (933)
T KOG2114|consen 77 QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNP-TNPSPASSLAVSEDLKTIVCGFT 145 (933)
T ss_pred ceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCC-CCCCcceEEEEEccccEEEEEec
Confidence 578999998875 89999872 4566 222 222 12356677788888778888864
No 316
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.68 E-value=1.5 Score=43.75 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=65.1
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~ 652 (1496)
|+++++..-. .++ ...|+.||.|..|++|+= .+.+..+.. +..|+++.-... ..|+.+-.+|+|.
T Consensus 2 V~al~~~d~d--~dg---~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-------~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFD--GDG---ENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-------GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecC--CCC---cceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-------CEEEEEecCCEEE
Confidence 6677765420 112 468999999999999983 467777765 456777776553 5799999999999
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEEcC-C--C-CEEEEEEcC
Q 000450 653 LASLETLRVERMFPGHPNYPAKVVWDC-P--R-GYIACLCRD 690 (1496)
Q Consensus 653 lWdl~~~~~l~~~~gH~~~V~~V~~sp-d--g-~~L~tgs~D 690 (1496)
+|+-.. +.-+ ... ...+.++.+.. + | .-|++|-.+
T Consensus 67 vY~~~~-RlWR-iKS-K~~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 67 VYDRSQ-RLWR-IKS-KNQVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred EEeCcc-eeee-ecc-CCCeEEEEEEcCCCCCceEEEEEecC
Confidence 997532 2222 222 22355665533 2 2 267888777
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.67 E-value=2.7 Score=49.47 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=82.0
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC-----CcEEEEECC-CCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-----CSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D-----gtV~lWDl~-tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
-+.|+||. .|++| +++|.+.-+| |.|-|||.. +.+.+..|..|.-.-..+.+.||
T Consensus 49 gRHFyGHg------~fs~d---------G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD---- 109 (305)
T PF07433_consen 49 GRHFYGHG------VFSPD---------GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD---- 109 (305)
T ss_pred CCEEecCE------EEcCC---------CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC----
Confidence 35677883 67887 8888876544 789999998 66677778777666667777777
Q ss_pred CCCCEEEEE------------------eCCCcEEEEECCCCcEEEE--e-------------------------------
Q 000450 637 PWSDCFLSV------------------GEDFSVALASLETLRVERM--F------------------------------- 665 (1496)
Q Consensus 637 ~~g~~l~Sg------------------s~DgsV~lWdl~~~~~l~~--~------------------------------- 665 (1496)
|..|+.+ ..+-++.+.|..+|+.+.. +
T Consensus 110 --G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 110 --GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred --CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 4333332 1122333444444332211 1
Q ss_pred ------------------c-------CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 666 ------------------P-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 666 ------------------~-------gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
. .-.+++-+|++++++.++++.|-- -+.+.+||..+|+++....
T Consensus 188 ~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-------Gg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 188 DAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-------GGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred ccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-------CCEEEEEECCCCCEeeccc
Confidence 0 112467888999999888776643 1799999999999877654
No 318
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.59 E-value=0.35 Score=55.16 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccc------------eeEeeeccccccccCcc
Q 000450 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAP------------IADLSICYPAMVSRDGK 82 (1496)
Q Consensus 15 psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~------------Vt~La~c~~~~~s~dg~ 82 (1496)
....||+|-|...|.+|+||...|.|.++.-+-+.+-+.+-...+.+|... |..+.+|.+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t------- 97 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT------- 97 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-------
Confidence 346799999999999999999999999999873111112223345677543 4555543332
Q ss_pred cccccccccccccccccCCCCEEEEEeCCCeEEEEECCCC
Q 000450 83 AEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSG 122 (1496)
Q Consensus 83 ~~~~~~~~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~~G 122 (1496)
....+.-.+.|.+|++|-+...
T Consensus 98 ------------------~r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 98 ------------------GRNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred ------------------CcceEEEecCCceeeeeeeecc
Confidence 1234555678999999998755
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=0.64 Score=59.35 Aligned_cols=142 Identities=14% Similarity=0.138 Sum_probs=95.9
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++++.||.+.|.... +.+...++ .-..++.+++++|+. .+...+.+++||.-| +.+.
T Consensus 85 y~asCS~DGkv~I~sl~---------------~~~~~~~~-df~rpiksial~Pd~----~~~~sk~fv~GG~ag-lvL~ 143 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLF---------------TDDEITQY-DFKRPIKSIALHPDF----SRQQSKQFVSGGMAG-LVLS 143 (846)
T ss_pred eEEEecCCCcEEEeecc---------------CCccceeE-ecCCcceeEEeccch----hhhhhhheeecCcce-EEEe
Confidence 89999999999984322 11112222 234578999999974 334467899999888 7776
Q ss_pred ECCCC-ceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC------CcEEEEEc
Q 000450 607 DLGSG-NLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN------YPAKVVWD 678 (1496)
Q Consensus 607 Dl~tg-~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~------~V~~V~~s 678 (1496)
.-.-. ... ..+..-.|+|.++.|. |+++|=++.+| |++||+.+++.+..++.... ....+.|.
T Consensus 144 er~wlgnk~~v~l~~~eG~I~~i~W~--------g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~ 214 (846)
T KOG2066|consen 144 ERNWLGNKDSVVLSEGEGPIHSIKWR--------GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ 214 (846)
T ss_pred hhhhhcCccceeeecCccceEEEEec--------CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec
Confidence 64321 111 2355667899999995 56888887666 99999998887766643222 34568898
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
++.+ |+.|=. .+|+|..++.
T Consensus 215 ~~~~-LVIGW~---------d~v~i~~I~~ 234 (846)
T KOG2066|consen 215 DEDR-LVIGWG---------DSVKICSIKK 234 (846)
T ss_pred CCCe-EEEecC---------CeEEEEEEec
Confidence 7765 444443 3899998873
No 320
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.37 E-value=11 Score=43.49 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=85.9
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc-------CCCEEEEEECCCCCCCCCCCEEEE
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH-------VAPVRQIILSPPQTEHPWSDCFLS 644 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H-------~~~V~~l~~sPd~~~~~~g~~l~S 644 (1496)
.=.-++|+|| +.+||.+...|+|+++|+.. ..+..+..- ...|..+.|.+......|...|+.
T Consensus 45 QWRkl~WSpD---------~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 45 QWRKLAWSPD---------CTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred hheEEEECCC---------CcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence 3467899998 89999999999999999974 444443321 245777778766555566667888
Q ss_pred EeCCCcEEEEECC-----CCcEEEEec---CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC-----CCEEEEEECCCCeE
Q 000450 645 VGEDFSVALASLE-----TLRVERMFP---GHPNYPAKVVWDCPRGYIACLCRDHSRTSDA-----VDVLFIWDVKTGAR 711 (1496)
Q Consensus 645 gs~DgsV~lWdl~-----~~~~l~~~~---gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~-----dg~V~VWDl~tg~~ 711 (1496)
..-+|.++=|-+. ..+.-++|. .+...|.++.++|..+.|++|+... ..|+ ..-+..|-+-.+..
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~--~~~~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ--NQDGMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC--CCCccccccccCceEEEEcCCCC
Confidence 8888877766542 234444443 3467899999999988887776531 1111 12467777666543
No 321
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.07 E-value=7.4 Score=48.05 Aligned_cols=224 Identities=14% Similarity=0.147 Sum_probs=116.0
Q ss_pred cEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCC-------------------CCCCccccC---------Ccce
Q 000450 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHN-------------------SPGASLKVN---------SHVS 562 (1496)
Q Consensus 511 ~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d-------------------~~~~~~d~~---------s~~~ 562 (1496)
.|+++.+..+.. -+++|..+|++.|++|..-.... .++.+-|+. ...+
T Consensus 3 ~v~~vs~a~~t~----Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P 78 (395)
T PF08596_consen 3 SVTHVSFAPETL----ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLP 78 (395)
T ss_dssp -EEEEEEETTTT----EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEE
T ss_pred eEEEEEecCCCc----eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCc
Confidence 466766555554 89999999999999996321110 011111211 1123
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEE--cc------cCCCEEEEEECCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM--HH------HVAPVRQIILSPPQT 634 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~--~~------H~~~V~~l~~sPd~~ 634 (1496)
...+....++|++++.+. -.+++.|..||++.|-|++....+..- .. ....|+++.|..-.
T Consensus 79 ~~l~~~~~g~vtal~~S~----------iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~- 147 (395)
T PF08596_consen 79 LTLLDAKQGPVTALKNSD----------IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT- 147 (395)
T ss_dssp EEEE---S-SEEEEEE-B----------TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred hhheeccCCcEeEEecCC----------CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe-
Confidence 444556689999999863 589999999999999999877766542 22 23457788775310
Q ss_pred CCCCC---CEEEEEeCCCcEEEEECC--C-CcE----EEEecCCCCCcEEEE-EcCC---------------------CC
Q 000450 635 EHPWS---DCFLSVGEDFSVALASLE--T-LRV----ERMFPGHPNYPAKVV-WDCP---------------------RG 682 (1496)
Q Consensus 635 ~~~~g---~~l~Sgs~DgsV~lWdl~--~-~~~----l~~~~gH~~~V~~V~-~spd---------------------g~ 682 (1496)
..-++ -++++|...|.+.+|.+. . ++- ......+.++|..|. ++.+ ..
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 01112 378888999999999774 1 221 112224556665554 3222 12
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEe
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~ 762 (1496)
++++.+ + ..++|+...+++...... .....+...+ . +..-+......++.+..+|.++.
T Consensus 228 ~vVvvS-e--------~~irv~~~~~~k~~~K~~--~~~~~~~~~~----v------v~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 228 YVVVVS-E--------SDIRVFKPPKSKGAHKSF--DDPFLCSSAS----V------VPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp EEEEE--S--------SEEEEE-TT---EEEEE---SS-EEEEEEE----E------EEEE-EEEEEEEEEEETTSEEEE
T ss_pred EEEEEc-c--------cceEEEeCCCCcccceee--ccccccceEE----E------EeecccCCceEEEEEECCCcEEE
Confidence 444444 4 689999998877654433 2222222112 0 00000223445678888999999
Q ss_pred eccccccc
Q 000450 763 SQIQNDER 770 (1496)
Q Consensus 763 W~l~~~e~ 770 (1496)
..+..++.
T Consensus 287 ~SLP~Lke 294 (395)
T PF08596_consen 287 YSLPSLKE 294 (395)
T ss_dssp EETTT--E
T ss_pred EECCCchH
Confidence 88855544
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.02 E-value=4.9 Score=47.31 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=84.7
Q ss_pred CceEEEEEEcC-CCCEEEEEeCCCc-EEEEEccCCCCCcee------eeEEeeccccceeEeeeccccccccCccccccc
Q 000450 16 SHRVTATSALT-QPPTLYTGGSDGS-ILWWSFSDSSYSEIK------PVAMLCGHSAPIADLSICYPAMVSRDGKAEHWK 87 (1496)
Q Consensus 16 sh~Vtava~Sp-Dg~~LaTGs~DG~-I~lWdl~~~~~~~~~------~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~ 87 (1496)
+.+--.++++| ++..+|-+=.-|+ ..+||..+ ++.. +-..|.||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~---g~~~~~~~a~~gRHFyGH------------------------- 55 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRT---GQLLQRLWAPPGRHFYGH------------------------- 55 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCC---CceeeEEcCCCCCEEecC-------------------------
Confidence 34555678888 4566666666676 66888874 2211 01122333
Q ss_pred ccccccccccccCCCCEEEEEe-----CCCeEEEEECCCC-eEEEeecCCCCCCC-CcEEEEcCCCCeEEEEcccccccC
Q 000450 88 AENSSNVMGKSSLDNGALISAC-----TDGVLCVWSRSSG-HCRRRRKLPPWVGS-PSVICTLPSNPRYVCIGCCFIDTN 160 (1496)
Q Consensus 88 ~~~~~~~~g~~s~d~~~LaSas-----~DG~l~VWdv~~G-~ci~~~~l~~~~g~-~~~i~~~s~~~~ll~~G~~~id~~ 160 (1496)
|.||+|+.+|.+.- ..|.|-|||+..+ +.+...... |. |-.+.. .+|++.|+++.-.|.+.
T Consensus 56 --------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~---GIGPHel~l-~pDG~tLvVANGGI~Th 123 (305)
T PF07433_consen 56 --------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH---GIGPHELLL-MPDGETLVVANGGIETH 123 (305)
T ss_pred --------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC---CcChhhEEE-cCCCCEEEEEcCCCccC
Confidence 23788888898853 4588999999844 333333333 33 444444 45664444443222222
Q ss_pred CcccccccccccccccccccCCCCCCCCccEEEEEECCceEEEEEEec-CccccCCeEEEEEe
Q 000450 161 QLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFH-GNLSIGPWKFMDVV 222 (1496)
Q Consensus 161 ~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~-~~~s~~~i~~l~~s 222 (1496)
- -..++-.....+...+..+|..+++++....- ...+--.|+-+++.
T Consensus 124 p---------------d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 124 P---------------DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred c---------------ccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec
Confidence 1 00122234566788999999999998876321 01122236777765
No 323
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.27 Score=61.20 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=73.6
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEE-EEEECCCCCCCCCCCEEEEEeCCCc
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR-QIILSPPQTEHPWSDCFLSVGEDFS 650 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~-~l~~sPd~~~~~~g~~l~Sgs~Dgs 650 (1496)
.|.-+.|+|. ..++|.+..+|.|.+.-+. .+.+.++.-|...++ +++|.|| |+.++.|-.||+
T Consensus 22 ~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D------GkllaVg~kdG~ 85 (665)
T KOG4640|consen 22 NIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD------GKLLAVGFKDGT 85 (665)
T ss_pred ceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC------CCEEEEEecCCe
Confidence 4667889996 7899999999999999887 778888887887887 9999999 999999999999
Q ss_pred EEEEECCCCcEEEEecC-CCCCcEEEEEc
Q 000450 651 VALASLETLRVERMFPG-HPNYPAKVVWD 678 (1496)
Q Consensus 651 V~lWdl~~~~~l~~~~g-H~~~V~~V~~s 678 (1496)
|++.|++++..+..+.. -...|.++.|.
T Consensus 86 I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred EEEEEccCCCceeccccccccchheeecc
Confidence 99999999887766421 12244455554
No 324
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.63 E-value=0.25 Score=60.32 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=65.3
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCC--CCC-CE
Q 000450 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS--DAV-DV 700 (1496)
Q Consensus 624 V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~--D~d-g~ 700 (1496)
-+-+.|||. |.+|+|--.-| |.+|--.+...++.|. |.+ |.-+.|||..+||+|-+....+.. |++ ..
T Consensus 213 etyv~wSP~------GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 213 ETYVRWSPK------GTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeEEecCC------ceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCce
Confidence 356889998 99999987665 8899877777777775 655 889999999999999775322211 111 47
Q ss_pred EEEEECCCCeEEEEEeC
Q 000450 701 LFIWDVKTGARERVLRG 717 (1496)
Q Consensus 701 V~VWDl~tg~~~~~l~g 717 (1496)
+.|||+.||.+.+.+.-
T Consensus 284 l~IWDI~tG~lkrsF~~ 300 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPV 300 (698)
T ss_pred EEEEEccccchhcceec
Confidence 99999999999888765
No 325
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.71 E-value=3.6 Score=41.23 Aligned_cols=107 Identities=11% Similarity=-0.002 Sum_probs=64.9
Q ss_pred EEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCC
Q 000450 512 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN 591 (1496)
Q Consensus 512 Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~ 591 (1496)
|+++++.....--.+.|+.|++|..|+|++=+ ..+..+.. ++.|++|.... .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----------------e~~~Ei~e-~~~v~~L~~~~----------~ 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----------------EIVAEITE-TDKVTSLCSLG----------G 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----------------cEEEEEec-ccceEEEEEcC----------C
Confidence 45555444222122489999999999994322 33444443 45788887665 4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC-CEEEEEeCCCcEE
Q 000450 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS-DCFLSVGEDFSVA 652 (1496)
Q Consensus 592 ~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g-~~l~Sgs~DgsV~ 652 (1496)
..++-|-.+|||.+|+- ...+...+.... ++++.+.... .+| .-|++|-.+|.|-
T Consensus 54 ~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~-~~~~~~~D~~---gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 54 GRFAYALANGTVGVYDR--SQRLWRIKSKNQ-VTSMAFYDIN---GDGVPELIVGWSNGKVE 109 (111)
T ss_pred CEEEEEecCCEEEEEeC--cceeeeeccCCC-eEEEEEEcCC---CCCceEEEEEecCCeEE
Confidence 67999999999999985 333444444333 5555543321 012 2678888787663
No 326
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=92.57 E-value=0.37 Score=58.48 Aligned_cols=114 Identities=15% Similarity=0.215 Sum_probs=88.6
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
-.-++..+.++|. |.+|++...- -|.+|+-..+..+..|.. ..|.-+.|+|. +.+|.+=+..
T Consensus 31 ~~~p~~~~~~SP~---------G~~l~~~~~~-~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~------~kYL~tw~~~ 92 (561)
T COG5354 31 ENWPVAYVSESPL---------GTYLFSEHAA-GVECWGGPSKAKLVRFRH--PDVKYLDFSPN------EKYLVTWSRE 92 (561)
T ss_pred cCcchhheeecCc---------chheehhhcc-ceEEccccchhheeeeec--CCceecccCcc------cceeeeeccC
Confidence 3457888899997 8888887655 489999888776666653 35899999998 7888875443
Q ss_pred ---------------CcEEEEECCCCcEEEEecCCCCC--cE-EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 649 ---------------FSVALASLETLRVERMFPGHPNY--PA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 649 ---------------gsV~lWdl~~~~~l~~~~gH~~~--V~-~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
..+.+||+.++..+..|.+...+ .+ -+.|+-+++|++=... ..++|+++ |+.
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~---------~sl~i~e~-t~n 162 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG---------SSLYIHEI-TDN 162 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc---------CeEEEEec-CCc
Confidence 34899999999999999887766 55 7899999998865433 47999997 544
No 327
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.27 E-value=0.23 Score=55.12 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=58.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++|..+|.|.++.|.. .+. ..+. ...+ ...|-|.-..-+ ++.+..+++.|+.|+.|
T Consensus 72 ~~~vG~~dg~v~~~n~n~-~g~-----~~d~-------~~s~-~e~i~~~Ip~~~--------~~~~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNL-EGA-----HSDR-------VCSG-EESIDLGIPNGR--------DSSLGCVGAQDGRIRAC 129 (238)
T ss_pred eEEeecccceEEEecCCc-cch-----HHHh-------hhcc-cccceecccccc--------ccceeEEeccCCceeee
Confidence 799999999999988872 110 0010 0011 122222221111 25688899999999999
Q ss_pred ECCCCceEEEEcccC-CCEEEEEECCCCCCCCCCCEEEEE--eCCCcEEEEECC
Q 000450 607 DLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLE 657 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~Sg--s~DgsV~lWdl~ 657 (1496)
++..++.+...-.|. .++.....+.. +..++.. |.|..++.|++.
T Consensus 130 n~~p~k~~g~~g~h~~~~~e~~ivv~s------d~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 130 NIKPNKVLGYVGQHNFESGEELIVVGS------DEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCceeeeeccccCCCcceeEEecC------CceEEeeccccchhhhhcchh
Confidence 999888777776676 33333333322 3344444 444555555543
No 328
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.24 E-value=12 Score=42.70 Aligned_cols=109 Identities=10% Similarity=0.107 Sum_probs=71.3
Q ss_pred EEEEEEe-cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc-----cCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 573 VLCLAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-----HVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 573 V~~La~s-pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~-----H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
...+++. ++ +.++++ ..+ .+.++|..+++....+.. .....+.+++.|+ |++.++-.
T Consensus 42 ~~G~~~~~~~---------g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~------G~ly~t~~ 104 (246)
T PF08450_consen 42 PNGMAFDRPD---------GRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD------GNLYVTDS 104 (246)
T ss_dssp EEEEEEECTT---------SEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT------S-EEEEEE
T ss_pred CceEEEEccC---------CEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC------CCEEEEec
Confidence 6667777 43 455444 444 456669998865443332 3346789999998 88777766
Q ss_pred CC--------CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 647 ED--------FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 647 ~D--------gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
.. +.|..++.. ++...... .-...+.++|+||++.|++.... .+.|+.+++.
T Consensus 105 ~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~-------~~~i~~~~~~ 164 (246)
T PF08450_consen 105 GGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF-------NGRIWRFDLD 164 (246)
T ss_dssp CCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT-------TTEEEEEEEE
T ss_pred CCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc-------cceeEEEecc
Confidence 54 457777766 55544433 34567899999999988765543 2789999885
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.86 E-value=0.26 Score=62.52 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=74.6
Q ss_pred CCEEEEEe----CCCcEEEEECCCCceEEE--EcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 591 NEVLVSGS----MDCSIRIWDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 591 ~~~L~SGs----~DgtV~lWDl~tg~~l~~--~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
..+++.++ .-|+|-|+- ++|++-+. ...| ++++.|+|. .-.+++|-.-|.+.+|...+.+.-..
T Consensus 27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe------~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPE------EFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChH------HHHHhhccccceeEEEecCCceeeee
Confidence 45555444 345677774 56765432 2222 457899998 56788888889999999887776666
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
...|+.+|.-+.|||+|..|+++..- |.|.+|-..
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~--------g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNP--------GSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCC--------ceeEEEEee
Confidence 67899999999999999999998877 999999765
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.83 E-value=0.61 Score=58.83 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=79.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEe-
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---ERMF- 665 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~---l~~~- 665 (1496)
+.+++-|+.-|.+.+++-..++.+ ....+-.+.+..+.++++ ..++|.|+..+.|.++.+..+.+ ...-
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~------e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV------EYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch------hHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 689999999999999998776644 333334455566667887 67888899999999998876432 1111
Q ss_pred --cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 666 --PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 666 --~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
..|...|++++|++++..+.+|..- |+|..-.+.+
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~--------Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQ--------GKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCC--------ceEEEEEech
Confidence 2367899999999999999998777 9998877766
No 331
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.78 E-value=2.3 Score=56.16 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=89.9
Q ss_pred cccCCcceEEEEecCCcc-EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEEcc----cCCCEEEEE
Q 000450 555 LKVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHH----HVAPVRQII 628 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~-V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~----H~~~V~~l~ 628 (1496)
.|.+.|+.+..+.-|... |..++-.... ++ - .....+.|-.+..+..||.+-. ..+..-.. ......|++
T Consensus 509 mDLe~GKVV~eW~~~~~~~v~~~~p~~K~-aq--l-t~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 509 MDLERGKVVEEWKVHDDIPVVDIAPDSKF-AQ--L-TNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA 584 (794)
T ss_pred EecCCCcEEEEeecCCCcceeEecccccc-cc--c-CCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence 367788888888877643 6655432110 00 0 1234566777889999999853 22211111 233566777
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
-..+ .+||.|+.+|.|||||-...+....+++-..+|..|..+.||+||++.|.. .+-+++.
T Consensus 585 Tt~~-------G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t---------yLlLi~t 646 (794)
T PF08553_consen 585 TTED-------GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT---------YLLLIDT 646 (794)
T ss_pred ecCC-------ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc---------eEEEEEE
Confidence 6654 489999999999999954444556678888999999999999999998875 6777775
No 332
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.58 E-value=0.43 Score=52.99 Aligned_cols=92 Identities=9% Similarity=0.036 Sum_probs=55.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
+..++.|+.|+.|.+|...-.... ..+..-..+|-+. + |.. +.+.+.++++.|+.|+.|++.-++.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-I-p~~---~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-I-PNG---RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceec-c-ccc---cccceeEEeccCCceeeeccccCceeeeecccc
Confidence 567889999999999987621111 1111111222222 2 221 125699999999999999999988887777776
Q ss_pred C-CcEEEEEcCCCCEEEEE
Q 000450 670 N-YPAKVVWDCPRGYIACL 687 (1496)
Q Consensus 670 ~-~V~~V~~spdg~~L~tg 687 (1496)
. ++.....+..++++...
T Consensus 145 ~~~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIA 163 (238)
T ss_pred CCCcceeEEecCCceEEee
Confidence 3 33333333333444433
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.46 E-value=0.3 Score=61.89 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=62.0
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~ 652 (1496)
+++|+|||. .-.|++|=.-|.+.+|...+.+.-..-..|..+|.-+.|+|+ |.+++++..-|.|.
T Consensus 62 atSLCWHpe---------~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~------G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 62 ATSLCWHPE---------EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHD------GTVLMTLDNPGSVH 126 (1416)
T ss_pred hhhhccChH---------HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCC------CCeEEEcCCCceeE
Confidence 678999996 568889988899999998877766666779999999999999 99999999999999
Q ss_pred EEECC
Q 000450 653 LASLE 657 (1496)
Q Consensus 653 lWdl~ 657 (1496)
+|.+.
T Consensus 127 lwr~d 131 (1416)
T KOG3617|consen 127 LWRYD 131 (1416)
T ss_pred EEEee
Confidence 99876
No 334
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.99 E-value=0.57 Score=39.51 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=34.6
Q ss_pred ecCCCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000450 9 IWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFS 46 (1496)
Q Consensus 9 lw~~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~ 46 (1496)
+++.+..+.+|+++.++|....||.|..||+|.++.++
T Consensus 4 ~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred eecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45677777889999999999999999999999999996
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=90.76 E-value=8.8 Score=47.38 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=96.2
Q ss_pred CCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE--Eec------CCccEEEEEEe
Q 000450 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY--FLG------HTGAVLCLAAH 579 (1496)
Q Consensus 508 h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~--l~g------H~~~V~~La~s 579 (1496)
..+.|+++... +.. .++.|+++|.+.|.+.. .+..+.. +.. ....|+++.|.
T Consensus 85 ~~g~vtal~~S-~iG----Fvaigy~~G~l~viD~R---------------GPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 85 KQGPVTALKNS-DIG----FVAIGYESGSLVVIDLR---------------GPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp -S-SEEEEEE--BTS----EEEEEETTSEEEEEETT---------------TTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred cCCcEeEEecC-CCc----EEEEEecCCcEEEEECC---------------CCeEEeeccccccccccccccCeeEEEEE
Confidence 35789998864 444 69999999999995432 1111111 111 23468888886
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCC---Cc----eEEEEcccCCCEEEEE-ECCCCCC--------------CC
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS---GN----LITVMHHHVAPVRQII-LSPPQTE--------------HP 637 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t---g~----~l~~~~~H~~~V~~l~-~sPd~~~--------------~~ 637 (1496)
-.. -.+..|..-.|+.|...|.+.+|.+.- +. .......+.++|..+. ++.+... ..
T Consensus 145 vm~-~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~ 223 (395)
T PF08596_consen 145 VMT-LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI 223 (395)
T ss_dssp EEE--TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-
T ss_pred EEe-cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC
Confidence 431 111234456899999999999998752 21 1122235667777766 4333111 01
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE-----cCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW-----DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~-----spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
.-+.++....+..+|++.+-+.+..+...........+.+ ...+..|++-..+ |.|+++.+..-+.+
T Consensus 224 ~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~--------G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 224 SIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN--------GSIRIYSLPSLKEI 295 (395)
T ss_dssp ---EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT--------SEEEEEETTT--EE
T ss_pred CcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECC--------CcEEEEECCCchHh
Confidence 1123455566888999999888776554422222334445 2356678888887 99999999887776
Q ss_pred EEEeCC
Q 000450 713 RVLRGT 718 (1496)
Q Consensus 713 ~~l~gh 718 (1496)
..+.-+
T Consensus 296 ~~~~l~ 301 (395)
T PF08596_consen 296 KSVSLP 301 (395)
T ss_dssp EEEE-S
T ss_pred hcccCC
Confidence 665543
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.72 E-value=25 Score=40.14 Aligned_cols=70 Identities=9% Similarity=-0.073 Sum_probs=55.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~ 666 (1496)
+++++-|...+.+.+-+.++|..+..|..-..-=.+-...++ +..+.+++.|++....|.++..++...+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~------~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFD------GGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCC------CceEEEecCCCcEEEecccccceEEecc
Confidence 677999999999999999999888777543321122334556 8899999999999999999999987754
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.70 E-value=12 Score=50.40 Aligned_cols=158 Identities=12% Similarity=0.086 Sum_probs=94.4
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEecCCCCcccC
Q 000450 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 510 ~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~La~spd~~~~~~~ 588 (1496)
+.|.++.+..+.. .++.+..+|+|.+.+-. +. ...+.| -.+.|.+.+|+||
T Consensus 69 ~~i~s~~fl~d~~----~i~v~~~~G~iilvd~e---------------t~--~~eivg~vd~GI~aaswS~D------- 120 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN----SICVITALGDIILVDPE---------------TL--ELEIVGNVDNGISAASWSPD------- 120 (1265)
T ss_pred cceEEEEEecccc----eEEEEecCCcEEEEccc---------------cc--ceeeeeeccCceEEEeecCC-------
Confidence 4677777555554 78999999999985322 11 111112 2457999999998
Q ss_pred cCCCEEEEEeCCCcEEEEEC----CC-------------------CceEEEEcccCC---------------------CE
Q 000450 589 SFNEVLVSGSMDCSIRIWDL----GS-------------------GNLITVMHHHVA---------------------PV 624 (1496)
Q Consensus 589 ~~~~~L~SGs~DgtV~lWDl----~t-------------------g~~l~~~~~H~~---------------------~V 624 (1496)
+++++-.+.+.++.+-+- -. |+.-..|++..+ .=
T Consensus 121 --ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~ 198 (1265)
T KOG1920|consen 121 --EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK 198 (1265)
T ss_pred --CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCC
Confidence 788888887777766443 11 111112332111 11
Q ss_pred EEEEECCCCCCCCCCCEEEEE----eCC-CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCC
Q 000450 625 RQIILSPPQTEHPWSDCFLSV----GED-FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1496)
Q Consensus 625 ~~l~~sPd~~~~~~g~~l~Sg----s~D-gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg 699 (1496)
++|.|.-| |++|+.. -.+ +.|++||-+ |..-.+-....+-=.+++|.|.|..+++--.+ .+| +
T Consensus 199 ~~IsWRgD------g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~---~sd--~ 266 (1265)
T KOG1920|consen 199 TSISWRGD------GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK---TSD--S 266 (1265)
T ss_pred ceEEEccC------CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeec---CCC--C
Confidence 24667666 8888872 234 899999966 33211111112223579999999999876654 233 5
Q ss_pred EEEEEECCCCe
Q 000450 700 VLFIWDVKTGA 710 (1496)
Q Consensus 700 ~V~VWDl~tg~ 710 (1496)
.|.++.- +|-
T Consensus 267 ~IvffEr-NGL 276 (1265)
T KOG1920|consen 267 DIVFFER-NGL 276 (1265)
T ss_pred cEEEEec-CCc
Confidence 7888874 443
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.62 E-value=0.079 Score=65.52 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=93.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe----CCCc
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS----MDCS 602 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs----~Dgt 602 (1496)
.++.|..+|.|.+.....-+ . ....+..+|....++++|++- +..+||.|- .|..
T Consensus 72 IlavG~atG~I~l~s~r~~h-----------d--Ss~E~tp~~ar~Ct~lAwneL--------Dtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPH-----------D--SSAEVTPGYARPCTSLAWNEL--------DTNHLAAGLDKHRNDSS 130 (783)
T ss_pred hhhhccccCceEEeecCCcc-----------c--ccceecccccccccccccccc--------cHHHHHhhhhhhcccCC
Confidence 67899999999985543100 0 123345678888999999885 356777773 6778
Q ss_pred EEEEECCCC--ceE--EEEcc-cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEecCCCCCcEEEE
Q 000450 603 IRIWDLGSG--NLI--TVMHH-HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VERMFPGHPNYPAKVV 676 (1496)
Q Consensus 603 V~lWDl~tg--~~l--~~~~~-H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~-~l~~~~gH~~~V~~V~ 676 (1496)
+.|||+.++ .+. ..|.+ -.....++.|-.+ .+++.+|...+.++++|++..- ....+ ....+..+.
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd------~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~t 202 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD------TKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGIT 202 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccC------cchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccce
Confidence 999999876 221 22222 2334456666655 6789999999999999998321 11111 233455677
Q ss_pred EcC-CCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 677 WDC-PRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 677 ~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.+| .+.|++.-. | |.|.+||.
T Consensus 203 Vdp~~~nY~cs~~-d--------g~iAiwD~ 224 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-D--------GDIAIWDT 224 (783)
T ss_pred ecCCCCCceeccc-c--------Cceeeccc
Confidence 777 667876443 5 89999993
No 339
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.25 E-value=6.2 Score=48.65 Aligned_cols=112 Identities=11% Similarity=0.040 Sum_probs=69.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEE-EEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR-QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~-~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
+..++.+..|+.+..+|.++|+.+..+......+. ...-+|- ..+..++.++.|+.+..+|.++|+.+-.++...
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheecccc
Confidence 34566677889999999999998877754321110 0001121 013356667788999999999988765543110
Q ss_pred C-------CcEEEEEcC--CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 670 N-------YPAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 670 ~-------~V~~V~~sp--dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
. ....+.-+| .+..+++++.+ |.++..|..+|+.+-.
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~--------g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGVVYALAYN--------GNLVALDLRSGQIVWK 281 (394)
T ss_pred CCCccchhcccccCCCcEEECCEEEEEEcC--------CeEEEEECCCCCEEEe
Confidence 0 011111222 35677777777 8999999999987654
No 340
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=0.6 Score=61.33 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=63.3
Q ss_pred CCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 639 SDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
+..++.|++-|.|...|+... ++...-..-..+|++++|+-+|++++.|-.+ |-|.+||+.+++.++.+.-
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~--------G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGD--------GHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCC--------CcEEEEEccCCcceeeeee
Confidence 345777777788888887653 2222222235689999999999999988877 9999999999999999999
Q ss_pred CCCCceeeeee
Q 000450 718 TASHSMFDHFC 728 (1496)
Q Consensus 718 h~a~vi~~~~~ 728 (1496)
|.+++..+.+.
T Consensus 171 ~~ap~t~vi~v 181 (1206)
T KOG2079|consen 171 HGAPVTGVIFV 181 (1206)
T ss_pred cCCccceEEEE
Confidence 99888776554
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.86 E-value=11 Score=42.93 Aligned_cols=109 Identities=18% Similarity=0.058 Sum_probs=79.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
..+++-||..+.+.--|..+|+.+..-.. ...|.+-+.- - |+.++-|+..+.+.+.+.++|.....|..-..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-v------gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-V------GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-E------CCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 67888899999999999999987643221 1223222211 1 67899999999999999999987777653322
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 671 ~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
-=......+++..+.+|+.| ++.|.-|.++..++...
T Consensus 95 vk~~a~~d~~~glIycgshd--------~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHD--------GNFYALDPKTYGCVYKS 131 (354)
T ss_pred hccceEEcCCCceEEEecCC--------CcEEEecccccceEEec
Confidence 11234457889999999999 99999999998887653
No 342
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.48 E-value=1.5 Score=57.81 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=69.4
Q ss_pred CCEEEEEeCCCcEEEEECCCC-ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
+.+++-|+..|.|-..|.... ...+.=..-.++|++++|+-+ |..++.|-.+|.|.+||...++.++.+.-|.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d------g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD------GSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC------CceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 456777877788888776532 111222223679999999998 8999999999999999999999999887776
Q ss_pred CCcEE---EEEcCCCCEEEEEEcC
Q 000450 670 NYPAK---VVWDCPRGYIACLCRD 690 (1496)
Q Consensus 670 ~~V~~---V~~spdg~~L~tgs~D 690 (1496)
.+.+. +.|..++..++++...
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~ 196 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTG 196 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCC
Confidence 65544 4556677777776554
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.93 E-value=12 Score=46.10 Aligned_cols=109 Identities=7% Similarity=-0.118 Sum_probs=70.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
+..++.++.++.+..+|.++|+.+.+............+. +..++.+..|+.+.-+|.++|+.+-.+.....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~--------~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS--------DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE--------CCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 4566677889999999999999887765443211111111 34666778899999999999998877653211
Q ss_pred CcE-EEEEcC--CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 671 YPA-KVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 671 ~V~-~V~~sp--dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+. ...-+| .+..++.+..+ |.++..|.++|+.+...
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~--------g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDN--------GRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCC--------CEEEEEEccCChhhhee
Confidence 000 000011 13456666666 89999999999876544
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.55 E-value=9.4 Score=47.82 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=56.4
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~ 652 (1496)
-....|.+. ..+|.-....+|.++.-.+.+....+... ..+..+-. |.+|+..+.+ .|.
T Consensus 71 g~~~vw~~~----------n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---------G~LL~~~~~~-~i~ 129 (443)
T PF04053_consen 71 GLSFVWSSR----------NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---------GNLLGVKSSD-FIC 129 (443)
T ss_dssp -SEEEE-TS----------SEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----------SSSEEEEETT-EEE
T ss_pred eeEEEEecC----------ccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---------CcEEEEECCC-CEE
Confidence 346677763 34666666888999632222222233222 12444432 4555555544 899
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 653 LASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 653 lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+||+.+++.++.+... +|..|.|++++.+++..+.+ +++|++..
T Consensus 130 ~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~---------~i~il~~~ 173 (443)
T PF04053_consen 130 FYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD---------SIYILKYN 173 (443)
T ss_dssp EE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S----------SEEEEEE-
T ss_pred EEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC---------eEEEEEec
Confidence 9999999999998743 38999999999999988875 78888754
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=86.45 E-value=7.6 Score=51.50 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=64.7
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE---EecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCc
Q 000450 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY---FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1496)
Q Consensus 526 ~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~---l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dgt 602 (1496)
....+|-.+..+.. ||.... ..+.+.. .........|++-.. ..++|.||.+|.
T Consensus 543 e~tflGls~n~lfr--iDpR~~-----------~~k~v~~~~k~Y~~~~~Fs~~aTt~----------~G~iavgs~~G~ 599 (794)
T PF08553_consen 543 EQTFLGLSDNSLFR--IDPRLS-----------GNKLVDSQSKQYSSKNNFSCFATTE----------DGYIAVGSNKGD 599 (794)
T ss_pred CceEEEECCCceEE--eccCCC-----------CCceeeccccccccCCCceEEEecC----------CceEEEEeCCCc
Confidence 35677777777666 653221 1111110 112234566776544 578999999999
Q ss_pred EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 603 V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
||+||-...+....|.+-..||..|.++.| |++++..| +..+.|++.
T Consensus 600 IRLyd~~g~~AKT~lp~lG~pI~~iDvt~D------GkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 600 IRLYDRLGKRAKTALPGLGDPIIGIDVTAD------GKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEeecccchhhhhcCCCCCCCeeEEEecCC------CcEEEEee-cceEEEEEE
Confidence 999994332333455666889999999999 88877666 456667765
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=85.17 E-value=0.36 Score=60.00 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=75.6
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV 651 (1496)
.+.+++|-.+ .+++++|.....+.++|++.. +.......+..|..+.+.|-. ++++|+-. |+.|
T Consensus 156 gqns~cwlrd---------~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~-----~nY~cs~~-dg~i 219 (783)
T KOG1008|consen 156 GQNSVCWLRD---------TKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFS-----PNYFCSNS-DGDI 219 (783)
T ss_pred CccccccccC---------cchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCC-----CCceeccc-cCce
Confidence 3446777654 688999998889999998732 223333445567777787732 67888776 9999
Q ss_pred EEEE-CCCCc-EEEEecCCC----CCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 652 ALAS-LETLR-VERMFPGHP----NYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 652 ~lWd-l~~~~-~l~~~~gH~----~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
.+|| .++-+ +++.+.... ..+..++|.|... .+++...| -++|+.+|+.
T Consensus 220 AiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd-------S~tIrlydi~ 275 (783)
T KOG1008|consen 220 AIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD-------SITIRLYDIC 275 (783)
T ss_pred eeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC-------cceEEEeccc
Confidence 9999 44332 222222222 2488999999654 56666666 2789999984
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.01 E-value=6.4 Score=48.63 Aligned_cols=133 Identities=13% Similarity=0.080 Sum_probs=86.8
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc--eEEEEcccC----CCEEEEE
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--LITVMHHHV----APVRQII 628 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~--~l~~~~~H~----~~V~~l~ 628 (1496)
.|++.|+.+...+-|.. |+-+.+.|+.-.+ .-...+. +.|-.|..|+=||.+-.. .+..-..|. .-..|.+
T Consensus 361 lDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~-Ql~~e~T-lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~a 437 (644)
T KOG2395|consen 361 LDIERGKIVEEWKFEDD-INMVDITPDFKFA-QLTSEQT-LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFA 437 (644)
T ss_pred eecccceeeeEeeccCC-cceeeccCCcchh-ccccccc-EEeecCCceEEecccccCcceeeeeeccccccccccceee
Confidence 35777888887777666 7777777762000 0001122 345568889999987322 222222221 1234444
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
-.- ..+++.||.+|.|||||--..+....++|-..+|..|..+.||++|++.|.. .+-+-++
T Consensus 438 TT~-------sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t---------yLlLi~t 499 (644)
T KOG2395|consen 438 TTE-------SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT---------YLLLIDT 499 (644)
T ss_pred ecC-------CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc---------EEEEEEE
Confidence 433 3489999999999999974444456678999999999999999999988864 5666554
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=84.43 E-value=38 Score=42.36 Aligned_cols=122 Identities=19% Similarity=0.133 Sum_probs=71.7
Q ss_pred EEEEecCCCCcccCcCCCEEEEEeCCCc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe-CCCc-
Q 000450 575 CLAAHRMVGTAKGWSFNEVLVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFS- 650 (1496)
Q Consensus 575 ~La~spd~~~~~~~~~~~~L~SGs~Dgt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs-~Dgs- 650 (1496)
..+|+|| + ..++++...|+. |.+.|+..++ +..+..-.+.-..=.|+|| |+.++-.+ ..|.
T Consensus 242 ~P~fspD-----G---~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spd------G~~ivf~Sdr~G~p 306 (425)
T COG0823 242 APAFSPD-----G---SKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPD------GSKIVFTSDRGGRP 306 (425)
T ss_pred CccCCCC-----C---CEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCC------CCEEEEEeCCCCCc
Confidence 5578887 2 556777777775 5566776665 3334433333335557787 77666554 3443
Q ss_pred -EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 651 -VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 651 -V~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
|.+.|++..... .+.-....-..-.|+|||++++..+.. +++-.|.+.|+.++..++.++.
T Consensus 307 ~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~-----~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 307 QIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFESSS-----GGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred ceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEEEecc-----CCceeeEEeccCCCCcEEEccc
Confidence 555566655542 222222222267899999999877643 1112377777777765666554
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=83.76 E-value=58 Score=37.67 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=87.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++.|+++| +.++..+ ......+.. +...|..+...++ -+.|+.=+ |+.+.++
T Consensus 9 ~L~vGt~~G-l~~~~~~--------------~~~~~~~i~--~~~~I~ql~vl~~---------~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLS--------------DPSKPTRIL--KLSSITQLSVLPE---------LNLLLVLS-DGQLYVY 61 (275)
T ss_pred EEEEEECCC-EEEEEec--------------CCccceeEe--ecceEEEEEEecc---------cCEEEEEc-CCccEEE
Confidence 799999998 6664431 011122222 2233999999886 34444433 5999999
Q ss_pred ECCCCceEEE--------------EcccCCCEEEEE-ECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-----cEEEEec
Q 000450 607 DLGSGNLITV--------------MHHHVAPVRQII-LSPPQTEHPWSDCFLSVGEDFSVALASLETL-----RVERMFP 666 (1496)
Q Consensus 607 Dl~tg~~l~~--------------~~~H~~~V~~l~-~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-----~~l~~~~ 666 (1496)
++........ -......+...+ -... .+...+.+...+.|.+|..... +..+.+.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~-----~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH-----EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeecccc-----ccceEEEEEECCEEEEEEEECCcccccceeEEEE
Confidence 9976543321 111233444444 1111 1445555666679999887652 4455554
Q ss_pred CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 667 gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
-...+..+.|. ++.+++|..+ ...+.|+.++.....+
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~---------~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSK---------GFYLIDLNTGSPSELL 173 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCC---------ceEEEecCCCCceEEe
Confidence 34678999998 5678887764 6889999988765544
No 350
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.45 E-value=60 Score=36.75 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=57.1
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE--CCCC-----cEEEEecC----CCCCcEEEEEcCCCCEEEEEEcCCC
Q 000450 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALAS--LETL-----RVERMFPG----HPNYPAKVVWDCPRGYIACLCRDHS 692 (1496)
Q Consensus 624 V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd--l~~~-----~~l~~~~g----H~~~V~~V~~spdg~~L~tgs~D~s 692 (1496)
-+.++|+.+. ......-+.+.+|.-|| ..+| +.+..++. ..-..-.++...+|...++.-..
T Consensus 160 sNgl~Wd~d~-----K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng-- 232 (310)
T KOG4499|consen 160 SNGLAWDSDA-----KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG-- 232 (310)
T ss_pred CccccccccC-----cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC--
Confidence 3466776652 23445556788898888 4444 33333322 11123345556666655544443
Q ss_pred CCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 693 RTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 693 g~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
++|+..|..||+.+.++.=.+.++.++.|.
T Consensus 233 ------~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 233 ------GTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ------cEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 899999999999999988877777765443
No 351
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.34 E-value=13 Score=47.95 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=67.4
Q ss_pred CCcEEEEECCC----C-ceEEEEcccCCCEEEEEECCCCCCCCCCCEEE-EEeCCCcEEEEECCCCcE------------
Q 000450 600 DCSIRIWDLGS----G-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-SVGEDFSVALASLETLRV------------ 661 (1496)
Q Consensus 600 DgtV~lWDl~t----g-~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~-Sgs~DgsV~lWdl~~~~~------------ 661 (1496)
+++|.+.|..+ + +.+..+.. ......+.++|| |++++ ++..+.+|.+.|+.+.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPD------GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPD------GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCC------CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 67899999988 3 44444433 445688999999 67554 556699999999987652
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+....- .-.+...+|.++|....+...| ..|-.||+.+
T Consensus 368 vaevev-GlGPLHTaFDg~G~aytslf~d--------sqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPEL-GLGPLHTAFDGRGNAYTTLFLD--------SQIVKWNIEA 405 (635)
T ss_pred EEeecc-CCCcceEEECCCCCEEEeEeec--------ceeEEEehHH
Confidence 333332 2345678999999877777777 8999999976
No 352
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=82.23 E-value=3.2 Score=35.07 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 669 ~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
...|..++|+|..++|+.+..| |.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~--------g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTED--------GEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECC--------CeEEEEEC-CCcC
Confidence 4568999999999999999998 99999988 5554
No 353
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=81.02 E-value=60 Score=41.38 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=63.9
Q ss_pred CCCcEEEEECCCCceEEEEcccCCC--------------------E-EEEEECCCCCCCCCCCEEEEEeCCC--------
Q 000450 599 MDCSIRIWDLGSGNLITVMHHHVAP--------------------V-RQIILSPPQTEHPWSDCFLSVGEDF-------- 649 (1496)
Q Consensus 599 ~DgtV~lWDl~tg~~l~~~~~H~~~--------------------V-~~l~~sPd~~~~~~g~~l~Sgs~Dg-------- 649 (1496)
.++.|...|..+|+.+-.+...... | ...++.+. +..+..++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~------~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK------TNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC------CCEEEEECCCCCCCccCCc
Confidence 4688999999999988776542111 1 01222332 45666666554
Q ss_pred ----------cEEEEECCCCcEEEEec--CCCCC----cEEEEEc----CCCC---EEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 650 ----------SVALASLETLRVERMFP--GHPNY----PAKVVWD----CPRG---YIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 650 ----------sV~lWdl~~~~~l~~~~--gH~~~----V~~V~~s----pdg~---~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.|.-+|.++|+.+-.+. .|... .....+. -++. .+++++.+ |.++..|.
T Consensus 247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~--------G~l~ald~ 318 (488)
T cd00216 247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN--------GFFYVLDR 318 (488)
T ss_pred cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC--------ceEEEEEC
Confidence 78889999999886653 22110 0001111 1232 57777777 99999999
Q ss_pred CCCeEEEEE
Q 000450 707 KTGARERVL 715 (1496)
Q Consensus 707 ~tg~~~~~l 715 (1496)
++|+.+-..
T Consensus 319 ~tG~~~W~~ 327 (488)
T cd00216 319 TTGKLISAR 327 (488)
T ss_pred CCCcEeeEe
Confidence 999987654
No 354
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.23 E-value=8.9 Score=49.50 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=27.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEeecCC
Q 000450 101 DNGALISACTDGVLCVWSRSSGHCRRRRKLP 131 (1496)
Q Consensus 101 d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~ 131 (1496)
+..+|++.+.|++||+||+.+++|+....+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 6789999999999999999999998876553
No 355
>PRK02888 nitrous-oxide reductase; Validated
Probab=80.11 E-value=18 Score=46.58 Aligned_cols=106 Identities=12% Similarity=0.044 Sum_probs=66.8
Q ss_pred EEEEeCCCcEEEEEC---CCCceEEEEcccCCCEEEEEECCCC--CCCCCCCEEEEEeCCCcEEEEECCC-----CcEEE
Q 000450 594 LVSGSMDCSIRIWDL---GSGNLITVMHHHVAPVRQIILSPPQ--TEHPWSDCFLSVGEDFSVALASLET-----LRVER 663 (1496)
Q Consensus 594 L~SGs~DgtV~lWDl---~tg~~l~~~~~H~~~V~~l~~sPd~--~~~~~g~~l~Sgs~DgsV~lWdl~~-----~~~l~ 663 (1496)
++..+.|+....... +.+..+..+...... ..+.|++.. ...++|++... .++.|.+.|.++ .+.+.
T Consensus 239 ~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~ 315 (635)
T PRK02888 239 NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTR 315 (635)
T ss_pred cceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEE
Confidence 445555666554443 445555554432222 455565531 11233664443 367899999998 45555
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 664 ~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
.++ -...+..|.++|||+++++++.- ..+|.|.|+.+.+
T Consensus 316 yIP-VGKsPHGV~vSPDGkylyVankl-------S~tVSVIDv~k~k 354 (635)
T PRK02888 316 YVP-VPKNPHGVNTSPDGKYFIANGKL-------SPTVTVIDVRKLD 354 (635)
T ss_pred EEE-CCCCccceEECCCCCEEEEeCCC-------CCcEEEEEChhhh
Confidence 555 44567899999999999987764 2789999998754
No 356
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=79.92 E-value=38 Score=43.14 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=74.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcccCCC--EEEEEECCCCCCCCCCCEEEEEe---------CCCcEEEEECCCCc
Q 000450 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP--VRQIILSPPQTEHPWSDCFLSVG---------EDFSVALASLETLR 660 (1496)
Q Consensus 592 ~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~--V~~l~~sPd~~~~~~g~~l~Sgs---------~DgsV~lWdl~~~~ 660 (1496)
..++.++.|+.|..+|.++|+.+-.+...... -..+.-+|-- .+..++.++ .++.+..+|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 67777888999999999999998777643321 0111112210 023444443 36789999999999
Q ss_pred EEEEecCCCC--------------------Cc-EEEEEcCCCCEEEEEEcCCC----------CCCCCCCEEEEEECCCC
Q 000450 661 VERMFPGHPN--------------------YP-AKVVWDCPRGYIACLCRDHS----------RTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 661 ~l~~~~gH~~--------------------~V-~~V~~spdg~~L~tgs~D~s----------g~~D~dg~V~VWDl~tg 709 (1496)
.+-.+..... .| ...+..+.+..+++++.|-. +..+.++.|+-.|+++|
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 8876643211 01 12344455677888775510 00112248999999999
Q ss_pred eEEEEEe
Q 000450 710 ARERVLR 716 (1496)
Q Consensus 710 ~~~~~l~ 716 (1496)
+..-.+.
T Consensus 267 ~~~W~~~ 273 (488)
T cd00216 267 KVKWFYQ 273 (488)
T ss_pred CEEEEee
Confidence 9987654
No 357
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=78.30 E-value=40 Score=45.96 Aligned_cols=108 Identities=12% Similarity=0.204 Sum_probs=67.8
Q ss_pred CCEEEE-----EeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe---CCCcEEEEECCC---C
Q 000450 591 NEVLVS-----GSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---EDFSVALASLET---L 659 (1496)
Q Consensus 591 ~~~L~S-----Gs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs---~DgsV~lWdl~~---~ 659 (1496)
|++++. ...-.+|++||-+ |.+-.+-....+.=.+++|-|. |..+++.. .|..|.++--+. |
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPs------gs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPS------GSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCC------CCeEeeeeecCCCCcEEEEecCCcccc
Confidence 777777 3333899999977 5543332223333457889887 88888764 456788886332 2
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 660 ~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+....++.....|..++|+.++..|++-..+. - ...|++|-+.+.+
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~----e-~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNL----E-NSLVQLWTTGNYH 325 (1265)
T ss_pred ccccCCcccccchheeeecCCCCceeeeeccc----c-cceEEEEEecCeE
Confidence 22223344444589999999999998733220 0 0459999876643
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.03 E-value=77 Score=39.20 Aligned_cols=116 Identities=18% Similarity=0.148 Sum_probs=71.9
Q ss_pred EEEEEecCCCCcccCcCCCEEE-EEeCCC----cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 574 LCLAAHRMVGTAKGWSFNEVLV-SGSMDC----SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~L~-SGs~Dg----tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
....++|+ +++++ +-+..| ++++.|+.+|+.+..--.... ...+.|.++ ++.|+....|
T Consensus 127 ~~~~~Spd---------g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d------~~~~~y~~~~ 190 (414)
T PF02897_consen 127 GGFSVSPD---------GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDD------GKGFFYTRFD 190 (414)
T ss_dssp EEEEETTT---------SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTT------SSEEEEEECS
T ss_pred eeeeECCC---------CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCC------CCEEEEEEeC
Confidence 35677887 55544 434444 599999999987643211111 123899998 7766665543
Q ss_pred C-----------cEEEEECCCCcE--EEEecCCCCC--cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 649 F-----------SVALASLETLRV--ERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 649 g-----------sV~lWdl~~~~~--l~~~~gH~~~--V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
. .|..|.+.+... ...|...... ...+..++|+++|+..+.. +.. ...+++-|+..+
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~--~~~--~s~v~~~d~~~~ 262 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS--GTS--ESEVYLLDLDDG 262 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES--SSS--EEEEEEEECCCT
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc--ccc--CCeEEEEecccc
Confidence 3 378888876532 3445443333 5678899999999876654 111 157899999875
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=77.64 E-value=4.6 Score=50.31 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=53.5
Q ss_pred eecCCCCceEEeecCcCcccCceEEEEECccccEEEEEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCcEE
Q 000450 1316 VSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMI 1395 (1496)
Q Consensus 1316 v~~~~~tqrlavg~~~g~~~~~~i~~ydl~t~~~~~~~~~h~~~~~~~~~~~~~~~~i~a~~fs~dg~~l~~~s~~~~~~ 1395 (1496)
-+|++.++|||+-.. +. .+-.|.+||+.+.++.+..++-|.- +.=+|||||+.||=-|..++.=
T Consensus 243 P~fspDG~~l~f~~~-rd-g~~~iy~~dl~~~~~~~Lt~~~gi~--------------~~Ps~spdG~~ivf~Sdr~G~p 306 (425)
T COG0823 243 PAFSPDGSKLAFSSS-RD-GSPDIYLMDLDGKNLPRLTNGFGIN--------------TSPSWSPDGSKIVFTSDRGGRP 306 (425)
T ss_pred ccCCCCCCEEEEEEC-CC-CCccEEEEcCCCCcceecccCCccc--------------cCccCCCCCCEEEEEeCCCCCc
Confidence 367889999998543 22 2667899999999888855543222 2557999999999999999999
Q ss_pred EEEec
Q 000450 1396 RWWSL 1400 (1496)
Q Consensus 1396 ~~w~~ 1400 (1496)
.||.+
T Consensus 307 ~I~~~ 311 (425)
T COG0823 307 QIYLY 311 (425)
T ss_pred ceEEE
Confidence 99987
No 360
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.91 E-value=8.4 Score=46.02 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=9.2
Q ss_pred cEEEEEECCceEEEEEEe
Q 000450 190 CTLVIVDTYGLTIVQTVF 207 (1496)
Q Consensus 190 ~~I~v~D~~t~~~l~~l~ 207 (1496)
..|-|+|....+++..+.
T Consensus 118 ~SVtVVDl~~~kvv~ei~ 135 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEID 135 (342)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred CeEEEEECCCCceeeeec
Confidence 445555555555554443
No 361
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=76.28 E-value=49 Score=43.10 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=69.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEc-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC---------Cc
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET---------LR 660 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~-~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~---------~~ 660 (1496)
++..+.-+.-.++.|||.+.+.+...-. ...+.|..+.|... |+++.++++|-.+.|.+|.-.. ..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst----~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST----PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec----CCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 3444444445579999999887553322 45678999998653 4589999999999999986421 12
Q ss_pred EEEEe--cCCC-CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 661 VERMF--PGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 661 ~l~~~--~gH~-~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.++.+ ..|. .+|.+..|.++|.+++ |+. +.++|+|-
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sG---------Nqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVV-GSG---------NQLFVFDK 155 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEE-EeC---------CEEEEECC
Confidence 33332 3444 5789999999986554 443 47999875
No 362
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.06 E-value=10 Score=48.45 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=71.4
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcce-EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~-~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
+++.|++-|.+.+++-. .++. .....|-.+.+..+..+++ ..++|.|+..+.|.+
T Consensus 47 ~l~~GsS~G~lyl~~R~---------------~~~~~~~~~~~~~~~~~~~~vs~~---------e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRH---------------TGEMRKLKNEGATGITCVRSVSSV---------EYLVAAGTASGRVSV 102 (726)
T ss_pred eEEEecccceEEEEecC---------------chhhhcccccCccceEEEEEecch---------hHhhhhhcCCceEEe
Confidence 79999999999984321 1111 1111223344455556765 688889999999999
Q ss_pred EECCCCceE-----EEE-cccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 606 WDLGSGNLI-----TVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 606 WDl~tg~~l-----~~~-~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
+-+..+... ..+ +.|...|+++.|+++ +..+.+|..-|.|.+-.+..
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~------~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN------GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEeccc------ccEEeecCCCceEEEEEech
Confidence 988764321 111 126788999999999 89999999999999888776
No 363
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=74.13 E-value=2 Score=55.54 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=87.2
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC--CCceE-----EEEcccCCCEEEEEECCCCCCCCC
Q 000450 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLI-----TVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 566 l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~--tg~~l-----~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
++|..|.|..|.|.+.. -..+. -.=|...+||+. .|+.. +...-...++.-|.|.|--+ .
T Consensus 128 ~kgf~G~v~dl~fah~~--------~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~---~ 194 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTK--------CPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV---N 194 (1283)
T ss_pred HhcCCCCcccccccccC--------ChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc---c
Confidence 46778888888885421 11111 222567889876 35433 33333455667788877532 2
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEE-----------EcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-----------WDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~-----------~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
.-+++.+-.+++|++.+..+... ..|.+|..++..++ .+|||..+++++.| |.++.|.+.
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d--------G~v~f~Qiy 265 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD--------GSVGFYQIY 265 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC--------Cccceeeee
Confidence 46888888999999988765332 55667877665543 69999999999999 887777763
Q ss_pred -CC----eEEEEEeCCCCC
Q 000450 708 -TG----ARERVLRGTASH 721 (1496)
Q Consensus 708 -tg----~~~~~l~gh~a~ 721 (1496)
+| +++.....|..+
T Consensus 266 i~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred eeccccHhhhhccCCCCCC
Confidence 23 455566667643
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=73.50 E-value=28 Score=41.55 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=72.5
Q ss_pred cCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc-eEEEEcc-cCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHH-HVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 568 gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~-~l~~~~~-H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
...++|+++.... +. |+.+. ...|.+|++...+ ....-.. ....|.++... +++++.|
T Consensus 86 ~~~g~V~ai~~~~----------~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--------~~~I~vg 145 (321)
T PF03178_consen 86 EVKGPVTAICSFN----------GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--------KNYILVG 145 (321)
T ss_dssp EESS-EEEEEEET----------TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--------TTEEEEE
T ss_pred eecCcceEhhhhC----------CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--------ccEEEEE
Confidence 3478899998653 45 44443 4789999998877 4433222 23367777664 4589999
Q ss_pred eCCCcEEEEECCC-CcEEEEec--CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 646 GEDFSVALASLET-LRVERMFP--GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 646 s~DgsV~lWdl~~-~~~l~~~~--gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
...+++.++..+. .+.+..+. .....++++.|-++++.++++..+ |.+.++...
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~--------gnl~~l~~~ 202 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD--------GNLFVLRYN 202 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT--------SEEEEEEE-
T ss_pred EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC--------CeEEEEEEC
Confidence 9999999885543 33233332 234468888888777788888887 999998764
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=72.59 E-value=69 Score=39.42 Aligned_cols=117 Identities=13% Similarity=0.133 Sum_probs=85.3
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC-EEEEEe--CCCc
Q 000450 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVG--EDFS 650 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~-~l~Sgs--~Dgs 650 (1496)
..++++++ ..+..+....+..|.+.|..+.+.++....-. .-..++++|+ ++ ..++-+ .+++
T Consensus 77 ~~i~v~~~--------~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~------~~~vYV~n~~~~~~~ 141 (381)
T COG3391 77 AGVAVNPA--------GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPD------GKYVYVANAGNGNNT 141 (381)
T ss_pred cceeeCCC--------CCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCC------CCEEEEEecccCCce
Confidence 45667765 14467777778999999988777776654333 4568899998 54 444444 3799
Q ss_pred EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 651 VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 651 V~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
+.+.|-.+++.....+.-..+ ..++++|+|.++++...+ ++.|.+.|..+....+
T Consensus 142 vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~-------~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 142 VSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSD-------DNTVSVIDTSGNSVVR 196 (381)
T ss_pred EEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecC-------CCeEEEEeCCCcceec
Confidence 999999999988876543334 899999999988877743 3899999977665554
No 366
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=72.04 E-value=27 Score=43.27 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=60.7
Q ss_pred EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE----cCC-----------
Q 000450 616 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW----DCP----------- 680 (1496)
Q Consensus 616 ~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~----spd----------- 680 (1496)
.|......+.++..+|. +++.+....=|.|.|+|+.++..+++++|-.+. .+.| .+.
T Consensus 302 ~l~D~~R~~~~i~~sP~------~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~ 373 (415)
T PF14655_consen 302 GLPDSKREGESICLSPS------GRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPK 373 (415)
T ss_pred eeccCCceEEEEEECCC------CCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccC
Confidence 34444556788999998 888888777799999999999999998876552 1222 111
Q ss_pred -----CCEEEE-EEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 681 -----RGYIAC-LCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 681 -----g~~L~t-gs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
..+|+. +-.- |.|.||++++|.++..++-
T Consensus 374 ~~~~~~l~LvIyaprR--------g~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 374 SSSRFALFLVIYAPRR--------GILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CCCcceEEEEEEeccC--------CeEEEEecCCCCEEEEEEe
Confidence 123332 2233 8999999999999887764
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=70.85 E-value=1.1e+02 Score=37.72 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=86.2
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEe--CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC-EEEEEeCC
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGS--MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGED 648 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs--~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~-~l~Sgs~D 648 (1496)
.-..+++.++ .+...++-. .+++|.+.|-.+++.+.....-..+ ..+++.|+ |. .+++-..+
T Consensus 117 ~P~~~~~~~~--------~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~------g~~vyv~~~~~ 181 (381)
T COG3391 117 GPVGLAVDPD--------GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPD------GNKVYVTNSDD 181 (381)
T ss_pred CCceEEECCC--------CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCC------CCeEEEEecCC
Confidence 3457888887 134444444 3789999999999888776554456 88999999 66 44445588
Q ss_pred CcEEEEECCCCcEEE-E---ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 649 FSVALASLETLRVER-M---FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~-~---~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
+.|.+.|.......+ . ...-......+.++|++.++.+.... ++ ++.+.+-|..++.....
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~---~~--~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG---SG--SNNVLKIDTATGNVTAT 246 (381)
T ss_pred CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc---CC--CceEEEEeCCCceEEEe
Confidence 999999987665553 1 01122345789999999988887765 11 25899999998877654
No 368
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=70.81 E-value=1.3e+02 Score=38.43 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=69.2
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC-----CCceEEEEcccCC---CE--EEEEECCCCCCCCC
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-----SGNLITVMHHHVA---PV--RQIILSPPQTEHPW 638 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~-----tg~~l~~~~~H~~---~V--~~l~~sPd~~~~~~ 638 (1496)
.-..|..+.|.|- ...+...|+.--....|.+|.+. +.+.+..-..+-+ +| ..+.|+|.
T Consensus 55 qFEhV~GlsW~P~-----~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk------ 123 (671)
T PF15390_consen 55 QFEHVHGLSWAPP-----CTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK------ 123 (671)
T ss_pred ccceeeeeeecCc-----ccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC------
Confidence 3345899999885 11123234444456789999985 3344443333221 11 34567776
Q ss_pred CCEEEEEeCCCcEEEEECC--CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 639 SDCFLSVGEDFSVALASLE--TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~--~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
...++.-..+..--+.+++ +.+....+. -.+.|.|.+|..||..|+++-.. . =.-||||-.
T Consensus 124 ~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGS----s---LHSyiWd~~ 186 (671)
T PF15390_consen 124 KAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGS----S---LHSYIWDSA 186 (671)
T ss_pred CceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCC----e---EEEEEecCc
Confidence 5555554433332345554 333334443 45679999999999998876532 0 246899853
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.09 E-value=42 Score=41.90 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=83.5
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccccccccCCC
Q 000450 104 ALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVP 183 (1496)
Q Consensus 104 ~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~~~~ 183 (1496)
.|.++.+-..|.=-|+..|+.+...++... ..+..+.++.... -.+.++-
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d----i~mv~~t~d~K~~--------------------------Ql~~e~T 397 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD----INMVDITPDFKFA--------------------------QLTSEQT 397 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC----cceeeccCCcchh--------------------------ccccccc
Confidence 344566667788889999999999887622 2334444443210 0011111
Q ss_pred CCCCCccEEEEEECCceE--EEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccccCCCc
Q 000450 184 MKNPPKCTLVIVDTYGLT--IVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGL 261 (1496)
Q Consensus 184 ~~~~~~~~I~v~D~~t~~--~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~~~~l 261 (1496)
...-.+..|..|||+-.. .+....+ +.....-++-+|. .-+. +++++|+.+|.|||+|-....+
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~-kqy~~k~nFsc~a---TT~s-G~IvvgS~~GdIRLYdri~~~A--------- 463 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQS-KQYSTKNNFSCFA---TTES-GYIVVGSLKGDIRLYDRIGRRA--------- 463 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeec-cccccccccceee---ecCC-ceEEEeecCCcEEeehhhhhhh---------
Confidence 222234678888887322 2222222 2222223333332 2233 5699999999999999633210
Q ss_pred ccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEE
Q 000450 262 CKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIF 303 (1496)
Q Consensus 262 ~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~ 303 (1496)
|.. ..++...+..|..+.+|+.|+..++...++
T Consensus 464 ----KTA-----lPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 464 ----KTA-----LPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred ----hhc-----ccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 011 333445667888899999999888887544
No 370
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=69.77 E-value=9.7 Score=46.24 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=57.3
Q ss_pred CCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-ecC-------C---
Q 000450 600 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-FPG-------H--- 668 (1496)
Q Consensus 600 DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~-~~g-------H--- 668 (1496)
.+.+.++|+.+++....... ...+....|+|+ |+.++-+. |+.|.++++.+++..+. ..| -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~------g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPD------GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SS------STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecC------CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence 35688999999775443333 567888999999 89888885 67899999887754432 222 0
Q ss_pred ------CCCcEEEEEcCCCCEEEEEEcC
Q 000450 669 ------PNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 669 ------~~~V~~V~~spdg~~L~tgs~D 690 (1496)
-+.-..+-||||+++|+..-.|
T Consensus 94 vyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp HHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred eccccccccccceEECCCCCEEEEEEEC
Confidence 1123568899999999988877
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=69.67 E-value=30 Score=45.10 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred ccEEEEEEecCCCCcccCcCCCEEEEEe------CCCc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGS------MDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 571 ~~V~~La~spd~~~~~~~~~~~~L~SGs------~Dgt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
..+...+++|+ ++.++--- .|.. +.+++. .+.......+ ...+.-.|+|+ |+.+
T Consensus 350 ~~vsspaiSpd---------G~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspD------G~~l 411 (591)
T PRK13616 350 GNITSAALSRS---------GRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLD------ADAV 411 (591)
T ss_pred cCcccceECCC---------CCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCC------CCce
Confidence 35678888887 55444333 3444 444454 2332222222 23778889998 6766
Q ss_pred EEEeCC------------CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEE
Q 000450 643 LSVGED------------FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 703 (1496)
Q Consensus 643 ~Sgs~D------------gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~V 703 (1496)
++.+.. +.+.+.+++.++... .....|..+.|||||..++... + +.|+|
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~--------g~v~V 472 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-G--------GKVYL 472 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-C--------CEEEE
Confidence 666432 233333444433322 2345699999999999988765 3 67777
No 372
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=69.52 E-value=16 Score=35.28 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=34.5
Q ss_pred CceEEEEECccccEEEEEecCCCCCCCCCCCcccccceEEEEECCCCCe-EEEEecCCcEEEEEe
Q 000450 1336 KASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEG-LVAFSEHGLMIRWWS 1399 (1496)
Q Consensus 1336 ~~~i~~ydl~t~~~~~~~~~h~~~~~~~~~~~~~~~~i~a~~fs~dg~~-l~~~s~~~~~~~~w~ 1399 (1496)
+|.+.-||.+|. +..||.. | -.--..|++|+||.+ |++=...-...|.|-
T Consensus 36 ~GRll~ydp~t~-~~~vl~~----~---------L~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 36 TGRLLRYDPSTK-ETTVLLD----G---------LYFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp -EEEEEEETTTT-EEEEEEE----E---------ESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CcCEEEEECCCC-eEEEehh----C---------CCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 889999999999 7766652 1 334588999999995 455555556666763
No 373
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=69.03 E-value=1.5e+02 Score=34.63 Aligned_cols=120 Identities=14% Similarity=0.027 Sum_probs=73.7
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCC--cEEEEECCCCceEEEEcccCCC-EEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDC--SIRIWDLGSGNLITVMHHHVAP-VRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~Dg--tV~lWDl~tg~~l~~~~~H~~~-V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
..-.|.|..+ +.++-|.+.-| .|+.+|+.+|+.+....-.... =-.+.... ++.+.-.=.+
T Consensus 46 FTQGL~~~~~---------g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-------d~l~qLTWk~ 109 (264)
T PF05096_consen 46 FTQGLEFLDD---------GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-------DKLYQLTWKE 109 (264)
T ss_dssp EEEEEEEEET---------TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-------TEEEEEESSS
T ss_pred cCccEEecCC---------CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-------CEEEEEEecC
Confidence 3456777554 78888888776 8999999999877554322110 11122211 2333344457
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
+...+||.++.+.+.+++-. ..=+.++ .|++.|+..... ..++++|.++.+..+.+.-.
T Consensus 110 ~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS--------~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGS--------SRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp SEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SS--------SEEEEE-TTT-SEEEEEE-E
T ss_pred CeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCc--------cceEEECCcccceEEEEEEE
Confidence 88899999999999888643 4456666 456666654333 69999999998887776543
No 374
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=68.05 E-value=11 Score=30.05 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=22.8
Q ss_pred ccceEEEEECCCCCeEEEEecCC--cEEEEE
Q 000450 1370 TTVISALIFSPDGEGLVAFSEHG--LMIRWW 1398 (1496)
Q Consensus 1370 ~~~i~a~~fs~dg~~l~~~s~~~--~~~~~w 1398 (1496)
.+...+-+||||||.|+=.|..+ +..-+|
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 45678899999999999988887 666665
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=67.33 E-value=96 Score=40.55 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=57.1
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeC------------CCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSM------------DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~------------DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
.+.-.|+|+ +..+.+.+. .+.+.+.++..++... ...+.|..+.|+|| |.
T Consensus 399 ~t~PsWspD---------G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD------G~ 460 (591)
T PRK13616 399 LTRPSWSLD---------ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRD------GV 460 (591)
T ss_pred CCCceECCC---------CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC------CC
Confidence 667788887 555544432 2233333554444322 23567999999999 88
Q ss_pred EEEEEeCCCcEEE---EECCCCcE-E---EEe-cCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 641 CFLSVGEDFSVAL---ASLETLRV-E---RMF-PGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 641 ~l~Sgs~DgsV~l---Wdl~~~~~-l---~~~-~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
.++-.. ++.|.+ -....|.. + +.+ .+-...+..+.|..++.+ +++..+
T Consensus 461 RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~ 516 (591)
T PRK13616 461 RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSD 516 (591)
T ss_pred EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecC
Confidence 777665 467766 44444541 1 112 223334688999999885 455544
No 376
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=67.19 E-value=1e+02 Score=35.60 Aligned_cols=111 Identities=9% Similarity=-0.010 Sum_probs=68.4
Q ss_pred EEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccC-CCEEEEEECCCCCCCCCCCEEE
Q 000450 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFL 643 (1496)
Q Consensus 565 ~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~ 643 (1496)
.+.|-...+..|+|+|+ .+.+++....++.|.-.|. .|+.+.++.-.. +-.-.|.+.-+ +.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd--------~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~------~~~vl 80 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPD--------TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN------GRYVL 80 (248)
T ss_dssp E-TT--S-EEEEEEETT--------TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST------TEEEE
T ss_pred ECCCccCCccccEEcCC--------CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC------CEEEE
Confidence 44555556999999997 2668888888888888886 588887765442 45778888665 55555
Q ss_pred EEeCCCcEEEEECCCCc------EEEEec-----CCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 644 SVGEDFSVALASLETLR------VERMFP-----GHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 644 Sgs~DgsV~lWdl~~~~------~l~~~~-----gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
+--.++.+.++++.... ....+. .+...+..++|.|.++.|+++...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~ 138 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER 138 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC
Confidence 44458999998883311 112221 234468999999998888877765
No 377
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=65.92 E-value=20 Score=42.97 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=44.5
Q ss_pred cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 650 SVALASLETLRVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 650 sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
.|.++|+.+++.+..++. ..++.+|..+-|.+ +|++.+.. ++.+.|||..||++++.+.+-.
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~-------~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAG-------DGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETT-------TTEEEEEETTT--EEEEE---S
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCC-------CCeEEEEeCcCCcEEeehhccC
Confidence 477889999999988874 23577899998877 55555442 2899999999999999987544
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=64.09 E-value=2.7e+02 Score=32.03 Aligned_cols=125 Identities=16% Similarity=0.097 Sum_probs=60.1
Q ss_pred cEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEE-EecCCCCcccCc
Q 000450 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA-AHRMVGTAKGWS 589 (1496)
Q Consensus 511 ~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La-~spd~~~~~~~~ 589 (1496)
.|+.+.++++.. .+++ -.||.+.+++++.+........ ...........-......|...+ ....
T Consensus 37 ~I~ql~vl~~~~----~llv-Lsd~~l~~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~f~~~~~~-------- 102 (275)
T PF00780_consen 37 SITQLSVLPELN----LLLV-LSDGQLYVYDLDSLEPVSTSAP-LAFPKSRSLPTKLPETKGVSFFAVNGGH-------- 102 (275)
T ss_pred eEEEEEEecccC----EEEE-EcCCccEEEEchhhcccccccc-ccccccccccccccccCCeeEEeecccc--------
Confidence 488888777665 4333 4569999988775544210000 00000000000111223344444 1111
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-----ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000450 590 FNEVLVSGSMDCSIRIWDLGSG-----NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1496)
Q Consensus 590 ~~~~L~SGs~DgtV~lWDl~tg-----~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~ 659 (1496)
.+...+......+|.+|..... +..+.+... ..+..+.|.++ .++.|..++ ..+.|+.++
T Consensus 103 ~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~~~--------~i~v~~~~~-f~~idl~~~ 167 (275)
T PF00780_consen 103 EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFLGN--------KICVGTSKG-FYLIDLNTG 167 (275)
T ss_pred ccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEeCC--------EEEEEeCCc-eEEEecCCC
Confidence 1333333444558888776542 345555443 56778888754 455554332 445555543
No 379
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=63.36 E-value=36 Score=42.06 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=55.6
Q ss_pred HHHHhHhHHhcChhHHHHHHHHHHhhcCCCCccchhhHHHHHHHHhC-ChhHHHHhHHHHHHHhhhhcCCCChhhhhhh
Q 000450 1221 VGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRG-SPRNVAQHLDKVVNFILQTMDPGNSVMRKTC 1298 (1496)
Q Consensus 1221 ~~~~l~~ia~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~l~~~i~~-~p~~~~~~l~~~~~~~~~~lDp~~~~~r~~~ 1298 (1496)
+.-++..+|+-.|..=|..|...|.. .+-+.....+..+-+++++ ....+.+.|+.++=.+++..|-.....|+.+
T Consensus 392 eed~~~~las~~P~~~I~~i~~~Ilt--~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKta 468 (516)
T KOG2956|consen 392 EEDCLTTLASHLPLQCIVNISPLILT--ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTA 468 (516)
T ss_pred HHHHHHHHHhhCchhHHHHHhhHHhc--CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhH
Confidence 44556678899999999999988844 4555443344444577755 4457888899999999999998877777754
No 380
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.28 E-value=2.5e+02 Score=37.99 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=40.4
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCc---------EEEEEcC-CCC---EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 648 DFSVALASLETLRVERMFPGHPNYP---------AKVVWDC-PRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 648 DgsV~lWdl~~~~~l~~~~gH~~~V---------~~V~~sp-dg~---~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
.++|.-.|.++|+.+-.+.-....+ .=+.+.- +|+ .++.+..+ |.+++.|-+||+.+..
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~--------G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQ--------GQIYVLDRRTGEPIVP 484 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCC--------CEEEEEECCCCCEEee
Confidence 3567778899999876665422111 1122322 553 77888887 9999999999998765
Q ss_pred Ee
Q 000450 715 LR 716 (1496)
Q Consensus 715 l~ 716 (1496)
..
T Consensus 485 ~~ 486 (764)
T TIGR03074 485 VE 486 (764)
T ss_pred ce
Confidence 43
No 381
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=62.26 E-value=2.5e+02 Score=34.95 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=37.0
Q ss_pred CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCCceeeeee
Q 000450 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT-ASHSMFDHFC 728 (1496)
Q Consensus 669 ~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh-~a~vi~~~~~ 728 (1496)
.+++..++.||++++|+.-..+ |.+.|....-.+.+..+.-. ........+|
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~--------g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDS--------GNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECC--------CCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 3579999999999999988777 89999887666665555444 2233334466
No 382
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=62.23 E-value=63 Score=40.03 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=56.0
Q ss_pred CcEEEEECCCCceEEEEcccCC--CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC-CCCc----EEEEecCC-----
Q 000450 601 CSIRIWDLGSGNLITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL-ETLR----VERMFPGH----- 668 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~--~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl-~~~~----~l~~~~gH----- 668 (1496)
.++.+||+.+.+.++++..-.. -...|.|..+- ....-|+.+....+|..|-- +.++ .+..++.-
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P---~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDP---DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SST---T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCC---CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 5799999999999999876432 35567776541 11345666666667766644 3332 22233211
Q ss_pred ------------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 669 ------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 669 ------------~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
..-|+.|..|.|++||.+.|.- +|.|+.||+..
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~-------~GdvrqYDISD 343 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL-------HGDVRQYDISD 343 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETT-------TTEEEEEE-SS
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEccc-------CCcEEEEecCC
Confidence 2447999999999999999975 38999999965
No 383
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=60.43 E-value=28 Score=44.96 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=31.2
Q ss_pred CcEEEEEcC----CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 671 YPAKVVWDC----PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 671 ~V~~V~~sp----dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
.+..+++++ +..+|++.|.| +++|+||+.+++++++..-.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D--------~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRD--------HTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETT--------SEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCC--------CeEEEEECCCCeEEEEeccc
Confidence 345666666 78899999999 99999999999998776544
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=58.97 E-value=1.5e+02 Score=38.16 Aligned_cols=60 Identities=12% Similarity=-0.062 Sum_probs=39.2
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
+.+.-+|+.+++.+-.++......... ..-.+..++.+..| |.++.+|.+||+.+...+-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~--------G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLE--------GYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCC--------CeEEEEECCCCCEeEEEeC
Confidence 467788999988876654222111111 11144566667666 9999999999999876653
No 385
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.91 E-value=1.3e+02 Score=40.22 Aligned_cols=71 Identities=24% Similarity=0.300 Sum_probs=50.2
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC----------CCcEE---EEe--------cCCCCCcEEEEEcCC-
Q 000450 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE----------TLRVE---RMF--------PGHPNYPAKVVWDCP- 680 (1496)
Q Consensus 623 ~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~----------~~~~l---~~~--------~gH~~~V~~V~~spd- 680 (1496)
.|..|.++|+ |+.++-.|..+ |.|..+. .|+.. +++ ..+...|..+.|+|.
T Consensus 86 ~v~~i~~n~~------g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 86 EVHQISLNPT------GSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eEEEEEECCC------CCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 5888999998 88888877754 5454442 12211 222 133457899999996
Q ss_pred --CCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 681 --RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 681 --g~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+..|++-..| +++|+||+..
T Consensus 159 ~~~~~l~vLtsd--------n~lR~y~~~~ 180 (717)
T PF10168_consen 159 ESDSHLVVLTSD--------NTLRLYDISD 180 (717)
T ss_pred CCCCeEEEEecC--------CEEEEEecCC
Confidence 5899999998 9999999965
No 386
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.83 E-value=52 Score=37.32 Aligned_cols=67 Identities=10% Similarity=0.011 Sum_probs=49.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEe-------c-------CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 639 SDCFLSVGEDFSVALASLETLRVERMF-------P-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~l~~~-------~-------gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
++++++...+|.+.+||+.+++++..- . .....|..+..+.+|.-+++-+ + |..|.|
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-n--------g~~y~y 92 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-N--------GDSYSY 92 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-C--------CCEEEe
Confidence 678999999999999999998865432 1 2445688888998887766654 4 678999
Q ss_pred ECCCCeEEEE
Q 000450 705 DVKTGARERV 714 (1496)
Q Consensus 705 Dl~tg~~~~~ 714 (1496)
|..-+.-.+.
T Consensus 93 ~~~L~~W~~v 102 (219)
T PF07569_consen 93 SPDLGCWIRV 102 (219)
T ss_pred ccccceeEEe
Confidence 8765554443
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=57.72 E-value=1.7e+02 Score=33.27 Aligned_cols=50 Identities=4% Similarity=-0.099 Sum_probs=40.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEE
Q 000450 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLC 688 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp-dg~~L~tgs 688 (1496)
|++++++-.-++|...|..+|+.+..+.-....|++++|-. +-..|++.+
T Consensus 223 G~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 223 GNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 78888888889999999999999999988888999999953 334454444
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=57.71 E-value=1.5e+02 Score=39.95 Aligned_cols=125 Identities=12% Similarity=0.024 Sum_probs=74.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCC--------EEEEEECCC--CC--------CCCCCCEEEEEeCCCcEE
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP--------VRQIILSPP--QT--------EHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~--------V~~l~~sPd--~~--------~~~~g~~l~Sgs~DgsV~ 652 (1496)
+..|..++.++.|.-.|..+|+.+-++...... .+.+.+-.. .. ....+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 466777778889999999999988777543321 122332110 00 001245777888899999
Q ss_pred EEECCCCcEEEEecCCCCCc-------------EEEEEcC--CCCEEEEEEcC--CCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 653 LASLETLRVERMFPGHPNYP-------------AKVVWDC--PRGYIACLCRD--HSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 653 lWdl~~~~~l~~~~gH~~~V-------------~~V~~sp--dg~~L~tgs~D--~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
-.|.++|+.+-.|.. .+.| ..+.-.| .+..+++|+.- ..+.....|.|+-+|++||+++-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877632 1111 0111112 24567777541 0000011389999999999997665
Q ss_pred e
Q 000450 716 R 716 (1496)
Q Consensus 716 ~ 716 (1496)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 389
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=57.56 E-value=33 Score=28.58 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCC---EEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 671 YPAKVVWDCPRG---YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 671 ~V~~V~~spdg~---~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
.|.+++|+|+.. +|+..-.- |.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~--------g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQ--------GRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccC--------CeEEEEEccc
Confidence 578999998554 66654443 8999999995
No 390
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.87 E-value=1.2e+02 Score=38.10 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=51.2
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE---------CCCCcEEEEec----------CC-CCCcEEEEEcCCC-
Q 000450 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS---------LETLRVERMFP----------GH-PNYPAKVVWDCPR- 681 (1496)
Q Consensus 623 ~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd---------l~~~~~l~~~~----------gH-~~~V~~V~~spdg- 681 (1496)
.|..|..+|. |..++-.|.||.+.++= +++|+....++ .. .-.+..++|+|+.
T Consensus 105 eV~~vl~s~~------GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 105 EVYQVLLSPT------GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEecCC------CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCcc
Confidence 3677888887 88888888888765542 23454432221 11 1146778999975
Q ss_pred --CEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 682 --GYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 682 --~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
..|+....| .+|||||...-+.+
T Consensus 179 ~D~hL~iL~sd--------nviRiy~lS~~tel 203 (741)
T KOG4460|consen 179 LDPHLVLLTSD--------NVIRIYSLSEPTEL 203 (741)
T ss_pred CCceEEEEecC--------cEEEEEecCCcchh
Confidence 678888887 89999999765544
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=56.60 E-value=25 Score=29.23 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=29.0
Q ss_pred cceEEEEECCCCC--eEEEEecCCcEEEEEeccchh
Q 000450 1371 TVISALIFSPDGE--GLVAFSEHGLMIRWWSLGSVW 1404 (1496)
Q Consensus 1371 ~~i~a~~fs~dg~--~l~~~s~~~~~~~~w~~~~~~ 1404 (1496)
++|-++.|||+.- .|-+++++-+.+-++.+-++|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 4788999998755 899999999999999986655
No 392
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=56.17 E-value=7.8 Score=50.52 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=68.4
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEE-----------EecCCCCcccCcCCCEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA-----------AHRMVGTAKGWSFNEVLV 595 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La-----------~spd~~~~~~~~~~~~L~ 595 (1496)
++-+|-.+|+|++..|+.-. ...+.+|...++.++ .+|| |..++
T Consensus 197 ~ic~~~~~~~i~lL~~~ra~----------------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpD---------Gtv~a 251 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRAL----------------RSLFRSHSQRVTDMAFFAEGVLKLASLSPD---------GTVFA 251 (1283)
T ss_pred eeeeccCCCceeEeeechHH----------------HHHHHhcCCCcccHHHHhhchhhheeeCCC---------CcEEE
Confidence 67778889999998887311 122334554444332 4665 89999
Q ss_pred EEeCCCcEEEEECC-CC----ceEEEEcccC-CCEEEEEECCCCC----CCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000450 596 SGSMDCSIRIWDLG-SG----NLITVMHHHV-APVRQIILSPPQT----EHPWSDCFLSVGEDFSVALASLETLRVE 662 (1496)
Q Consensus 596 SGs~DgtV~lWDl~-tg----~~l~~~~~H~-~~V~~l~~sPd~~----~~~~g~~l~Sgs~DgsV~lWdl~~~~~l 662 (1496)
.+..||.|+.|.+. +| .|++.++.|. ++-.|..+..... ...|...|-+.....-+++|.....+|+
T Consensus 252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 99999999999875 23 3667777777 3443433433210 0112223334445678899988888877
No 393
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=55.57 E-value=1.3e+02 Score=35.91 Aligned_cols=112 Identities=8% Similarity=-0.023 Sum_probs=66.4
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCC-EEEEEeCCCcEEEEECCC--Cc----e-EEEEcccCCCEEEEEECCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGS--GN----L-ITVMHHHVAPVRQIILSPPQ 633 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~-~L~SGs~DgtV~lWDl~t--g~----~-l~~~~~H~~~V~~l~~sPd~ 633 (1496)
.++.+.+|-..-+.|+|+|| ++ +.++=+..+.|.-|++.. +. . ...+..+.+.--.++..-+
T Consensus 154 ~~~l~~~~~~~~NGla~SpD---------g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad- 223 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPD---------GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD- 223 (307)
T ss_pred EEEeecCcEEecCceEECCC---------CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC-
Confidence 33444444445578999998 54 455555667888887752 21 1 1112122233333444444
Q ss_pred CCCCCCCEEEEEeCCC-cEEEEECCCCcEEEEecCCCCCcEEEEEc-CCCCEEEEEEc
Q 000450 634 TEHPWSDCFLSVGEDF-SVALASLETLRVERMFPGHPNYPAKVVWD-CPRGYIACLCR 689 (1496)
Q Consensus 634 ~~~~~g~~l~Sgs~Dg-sV~lWdl~~~~~l~~~~gH~~~V~~V~~s-pdg~~L~tgs~ 689 (1496)
|++.+++-.++ .|..|+.+ ++.+..+......+++++|- |+.+.|.+.+.
T Consensus 224 -----G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 224 -----GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred -----CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 56554444443 89999988 89888887776778888884 45566655444
No 394
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=55.28 E-value=1.4e+02 Score=33.52 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=68.6
Q ss_pred hhHHHHHHHhhcCcchHHHHHHHHHhhhhhhccccccCchhhhhhhhhhhhhhccccccccCCCCCCChhhhHHHHHHHH
Q 000450 1145 VVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGIL 1224 (1496)
Q Consensus 1145 ~~~~~~~l~~~~~~~~~~~ai~l~~~gf~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 1224 (1496)
+...+.+.+.+.++.+..+|..++++=+. .=+..+++.+..++.-++..+. . + -...|++ |..+
T Consensus 54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~-~l~~~~~~~~~~~l~~Ll~~~~-----------~-~--~~~i~~~-a~~~ 117 (228)
T PF12348_consen 54 LLDAIIKQLSDLRSKVSKTACQLLSDLAR-QLGSHFEPYADILLPPLLKKLG-----------D-S--KKFIREA-ANNA 117 (228)
T ss_dssp --HHHHH-S-HH---HHHHHHHHHHHHHH-HHGGGGHHHHHHHHHHHHHGGG-----------------HHHHHH-HHHH
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhHhHHHHHHHHHHHHHHHHc-----------c-c--cHHHHHH-HHHH
Confidence 33566677778899999999888766554 3333332211222222222221 0 0 1123332 6667
Q ss_pred hHhHHhcCh--hHH-HHHHHHHHhhcCCC-CccchhhHHHHHHHHhCCh---hHHHH--hHHHHHHHhhhhcCCCChhhh
Q 000450 1225 LPSLAMADI--LGF-LTVVESQIWSTASD-SPVHLVSIMTIIRVVRGSP---RNVAQ--HLDKVVNFILQTMDPGNSVMR 1295 (1496)
Q Consensus 1225 l~~ia~~~~--~~f-~~~~~~~i~~~~~~-~~~~~~~~~~l~~~i~~~p---~~~~~--~l~~~~~~~~~~lDp~~~~~r 1295 (1496)
|..|...-+ +.. ...+.... ... ..+...++..|..++++.| ..+.. .++.++..+.++|.=.++..|
T Consensus 118 L~~i~~~~~~~~~~~~~~l~~~~---~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR 194 (228)
T PF12348_consen 118 LDAIIESCSYSPKILLEILSQGL---KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVR 194 (228)
T ss_dssp HHHHHTTS-H--HHHHHHHHHHT---T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHH
Confidence 777777766 333 22222221 112 2333445556667888888 33333 468999999999977777777
Q ss_pred hhhhhHHHHHH
Q 000450 1296 KTCLHTSMAAL 1306 (1496)
Q Consensus 1296 ~~~l~~~~~~l 1306 (1496)
+..- .++..+
T Consensus 195 ~~Ar-~~~~~l 204 (228)
T PF12348_consen 195 EAAR-ECLWAL 204 (228)
T ss_dssp HHHH-HHHHHH
T ss_pred HHHH-HHHHHH
Confidence 6544 334444
No 395
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=53.75 E-value=2.4e+02 Score=33.81 Aligned_cols=106 Identities=9% Similarity=0.150 Sum_probs=68.1
Q ss_pred EEECC-CCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCcEEEEECCC------Cc-EEEEecCCCCCcEEE
Q 000450 605 IWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASLET------LR-VERMFPGHPNYPAKV 675 (1496)
Q Consensus 605 lWDl~-tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-DgsV~lWdl~~------~~-~l~~~~gH~~~V~~V 675 (1496)
+|-+. .+...+.+..|-..-+.|+|+|| ++.+..... .+.|.-|++.. ++ ....+....+.+-.+
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpD------g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~ 218 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPD------GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM 218 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCC------CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCce
Confidence 44444 46666666666556678999999 766655544 47777777652 11 122333345566677
Q ss_pred EEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCcee
Q 000450 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1496)
Q Consensus 676 ~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~ 724 (1496)
+...+|.+.+++..+ + +.|.+|+.. |+++..+.-+.....+
T Consensus 219 ~vDadG~lw~~a~~~------g-~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 219 AVDADGNLWVAAVWG------G-GRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred EEeCCCCEEEecccC------C-ceEEEECCC-CcEEEEEECCCCCCcc
Confidence 888888877644443 0 389999998 9999888877544333
No 396
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=52.25 E-value=57 Score=40.35 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=51.1
Q ss_pred CeeecCCCCceEEeecCcCcccCceEEEEECccccEEE-EEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecC-
Q 000450 1314 PMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIK-VLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEH- 1391 (1496)
Q Consensus 1314 p~v~~~~~tqrlavg~~~g~~~~~~i~~ydl~t~~~~~-~~~~h~~~~~~~~~~~~~~~~i~a~~fs~dg~~l~~~s~~- 1391 (1496)
-..++.+..+|||++-..|-=..-+|.|+|++|++.+. .|. ...-+.++|++||+.|.--...
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~---------------~~~~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE---------------NPKFSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE---------------EEESEEEEECTTSSEEEEEECST
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc---------------ccccceEEEeCCCCEEEEEEeCc
Confidence 35678899999999966543123569999999994433 333 1222349999999988655533
Q ss_pred ---------CcEEEEEeccchh
Q 000450 1392 ---------GLMIRWWSLGSVW 1404 (1496)
Q Consensus 1392 ---------~~~~~~w~~~~~~ 1404 (1496)
...|..|++++..
T Consensus 192 ~~~~~~~~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 192 DQRTSDSGYPRQVYRHKLGTPQ 213 (414)
T ss_dssp TTSS-CCGCCEEEEEEETTS-G
T ss_pred ccccccCCCCcEEEEEECCCCh
Confidence 4457888887654
No 397
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.61 E-value=80 Score=42.95 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=65.6
Q ss_pred EEEEEeCCCcEEEEECCCCceE-----EEEccc------CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE
Q 000450 593 VLVSGSMDCSIRIWDLGSGNLI-----TVMHHH------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1496)
Q Consensus 593 ~L~SGs~DgtV~lWDl~tg~~l-----~~~~~H------~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~ 661 (1496)
.++..+++-.|..+|+++...- .-|+.| ..-..++.|+|.- -...+....|+.|++..+.....
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-----p~n~av~l~dlsl~V~~~~~~~~ 190 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-----PLNSAVDLSDLSLRVKSTKQLAQ 190 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-----cchhhhhccccchhhhhhhhhhh
Confidence 4455556668999999754321 112222 2334567788862 33566777899999887754322
Q ss_pred -EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 662 -ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 662 -l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
+..++ -....++|+|+|-|+.++.|-.. |++.-|..
T Consensus 191 ~v~s~p-~t~~~Tav~WSprGKQl~iG~nn--------Gt~vQy~P 227 (1405)
T KOG3630|consen 191 NVTSFP-VTNSQTAVLWSPRGKQLFIGRNN--------GTEVQYEP 227 (1405)
T ss_pred hhcccC-cccceeeEEeccccceeeEecCC--------CeEEEeec
Confidence 23332 34467999999999999998887 88887764
No 398
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=51.32 E-value=1.5e+02 Score=33.41 Aligned_cols=103 Identities=18% Similarity=0.299 Sum_probs=66.7
Q ss_pred CEEEEEeCCCcEEEEECC--CCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC------CcEEEE-ECCC----
Q 000450 592 EVLVSGSMDCSIRIWDLG--SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED------FSVALA-SLET---- 658 (1496)
Q Consensus 592 ~~L~SGs~DgtV~lWDl~--tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D------gsV~lW-dl~~---- 658 (1496)
+.|+.+...+.|.+|++. ..+.+.+|..- +.|..+.++.. |+++++.=.+ ..+|+| |.+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~------GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEA------GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccc------cceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 344333556789999998 34466777654 78999999998 9999996432 256665 2221
Q ss_pred CcEEE-EecCC---------------------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 659 LRVER-MFPGH---------------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 659 ~~~l~-~~~gH---------------------~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
.++++ .+-|| ...+.+++-.|...-|++||.+ ++.+|.++.+.
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~---------~l~lf~l~~~~ 166 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN---------KLVLFTLKYQT 166 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC---------EEEEEEEEEEE
Confidence 12221 22232 2356778888876777888875 99999876543
No 399
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=50.10 E-value=5.1e+02 Score=30.80 Aligned_cols=112 Identities=10% Similarity=0.111 Sum_probs=66.7
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~ 588 (1496)
.+.|+++... .. ++++|. ++.+.++.|+. ..+-.....+..+ -.|+++...
T Consensus 88 ~g~V~ai~~~--~~----~lv~~~-g~~l~v~~l~~------------~~~l~~~~~~~~~-~~i~sl~~~--------- 138 (321)
T PF03178_consen 88 KGPVTAICSF--NG----RLVVAV-GNKLYVYDLDN------------SKTLLKKAFYDSP-FYITSLSVF--------- 138 (321)
T ss_dssp SS-EEEEEEE--TT----EEEEEE-TTEEEEEEEET------------TSSEEEEEEE-BS-SSEEEEEEE---------
T ss_pred cCcceEhhhh--CC----EEEEee-cCEEEEEEccC------------cccchhhheecce-EEEEEEecc---------
Confidence 4678887644 22 555554 68999977761 0011222223232 367777654
Q ss_pred cCCCEEEEEeCCCcEEEEECCC-CceEEEEcc--cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC
Q 000450 589 SFNEVLVSGSMDCSIRIWDLGS-GNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1496)
Q Consensus 589 ~~~~~L~SGs~DgtV~lWDl~t-g~~l~~~~~--H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1496)
+.+++.|.....|.++.... +..+..+.. ....++++.|-++ ++.++.+..+|.+.++...
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d------~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD------EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S------SSEEEEEETTSEEEEEEE-
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecC------CcEEEEEcCCCeEEEEEEC
Confidence 56888888888888764332 332333322 2445888888877 5699999999999999875
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=48.38 E-value=2.2e+02 Score=36.86 Aligned_cols=123 Identities=10% Similarity=-0.027 Sum_probs=69.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCC-CEEEEEECC--CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA-PVRQIILSP--PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~-~V~~l~~sP--d~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g 667 (1496)
+..++.++.++.|.-.|..+|+.+-++..... .+......+ .....-.+..++.++.|+.+.-+|.++|+.+-.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 35566677788899999999998877653211 111100000 000001134667778899999999999998866542
Q ss_pred --CCCCcEEEEEcC--CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 668 --HPNYPAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 668 --H~~~V~~V~~sp--dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
+... ..+.-+| .+..++++... +-...+|.|+-+|.+||+.+-...
T Consensus 149 ~~~~~~-~~~tssP~v~~g~Vivg~~~--~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 149 GDYKAG-YTITAAPLVVKGKVITGISG--GEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccc-ccccCCcEEECCEEEEeecc--cccCCCcEEEEEECCCCceeEecc
Confidence 1110 0111112 13456665431 001113899999999999876654
No 401
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=48.35 E-value=50 Score=26.21 Aligned_cols=32 Identities=6% Similarity=-0.091 Sum_probs=25.6
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
|++++|++++.+ +++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~-------~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSG-------SNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCC-------CCEEEEEECCCCeEEEEEEC
Confidence 688888888865 27999999999988776654
No 402
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=48.21 E-value=69 Score=30.82 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=37.5
Q ss_pred CceEEEEECccccEEEEEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCcEEEEEec
Q 000450 1336 KASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSL 1400 (1496)
Q Consensus 1336 ~~~i~~ydl~t~~~~~~~~~h~~~~~~~~~~~~~~~~i~a~~fs~dg~~l~~~s~~~~~~~~w~~ 1400 (1496)
-|.|+.||-+. +++... |. ..-..+++|||+|+|-.-|.....|.+++.
T Consensus 35 ~~~Vvyyd~~~---~~~va~----g~---------~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 35 WGNVVYYDGKE---VKVVAS----GF---------SFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CceEEEEeCCE---eEEeec----cC---------CCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 45699999764 555441 22 234679999999999999999999999975
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=47.35 E-value=1.3e+02 Score=37.55 Aligned_cols=95 Identities=6% Similarity=-0.063 Sum_probs=61.4
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCC-EEEEEECCCCCC------
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP-VRQIILSPPQTE------ 635 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~-V~~l~~sPd~~~------ 635 (1496)
...|......+.++..+|. +++.+....=|.|.++|+.++..++.+++..+. +.-+....+...
T Consensus 300 r~~l~D~~R~~~~i~~sP~---------~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~ 370 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPS---------GRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSN 370 (415)
T ss_pred EEeeccCCceEEEEEECCC---------CCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccccccccc
Confidence 3445555666888999997 788888777789999999999988888875432 111111111000
Q ss_pred ----CCCCC--EEEEEeCCCcEEEEECCCCcEEEEec
Q 000450 636 ----HPWSD--CFLSVGEDFSVALASLETLRVERMFP 666 (1496)
Q Consensus 636 ----~~~g~--~l~Sgs~DgsV~lWdl~~~~~l~~~~ 666 (1496)
.+... +++-.-.-|.|-||++++|..+..+.
T Consensus 371 ~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 371 SPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 00011 23334567889999999888777664
No 404
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.80 E-value=3.8e+02 Score=31.58 Aligned_cols=103 Identities=18% Similarity=0.292 Sum_probs=58.6
Q ss_pred CCCcEEEEECCCCceEE--EEc--ccCCCEEEEEECCCCCCCCCCCEEEEEeC-----CCcEEEEECCCCcEEEEec---
Q 000450 599 MDCSIRIWDLGSGNLIT--VMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGE-----DFSVALASLETLRVERMFP--- 666 (1496)
Q Consensus 599 ~DgtV~lWDl~tg~~l~--~~~--~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-----DgsV~lWdl~~~~~l~~~~--- 666 (1496)
+..++.+-|..+|+++. ++. .+.-.|+.++.-+| |...+-+-. |.--.+=-...++.+.-+.
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d------gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pe 272 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD------GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPE 272 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC------CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCH
Confidence 44556666766777653 333 35556888888777 443333211 2222222223344443332
Q ss_pred ----CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 667 ----GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 667 ----gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
.-.++|-+|+.+-+..+++..+-. | +...+||..||..+..
T Consensus 273 e~~~~~anYigsiA~n~~~glV~lTSP~--G-----N~~vi~da~tG~vv~~ 317 (366)
T COG3490 273 EQTAAFANYIGSIAANRRDGLVALTSPR--G-----NRAVIWDAATGAVVSE 317 (366)
T ss_pred HHHHHHHhhhhheeecccCCeEEEecCC--C-----CeEEEEEcCCCcEEec
Confidence 223477888988777766655543 1 5788999999998654
No 405
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=46.24 E-value=7e+02 Score=32.33 Aligned_cols=250 Identities=17% Similarity=0.175 Sum_probs=125.9
Q ss_pred HHHHHHHhhcccccCCCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccccccCCCCc
Q 000450 984 SALAAFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEH 1063 (1496)
Q Consensus 984 s~l~~~~~~~l~~~~~~~~~p~l~~La~~wqd~~~~vr~aar~l~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~ 1063 (1496)
+.-...+|.+|......|-.|.|-.+-..-=|..++||+||..-.. ++.+..+. -+ -|.++-++
T Consensus 196 ~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~k-ai~~~~~~-----~a--VK~llpsl-------- 259 (569)
T KOG1242|consen 196 LLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAK-AIMRCLSA-----YA--VKLLLPSL-------- 259 (569)
T ss_pred HHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHH-HHHHhcCc-----ch--hhHhhhhh--------
Confidence 3334456667664444466666666666667999999999988888 66676665 22 22222110
Q ss_pred cCcccccccccccccCCCCcccCCCccchhhhhhhhhhccccceeecccCCccchhchhhhh-hhhhhhhcCCCCChhhH
Q 000450 1064 ANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHIIV-AAALAIWYPSLVKPTLA 1142 (1496)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~~~i~~-~~~la~~~~~~~~~~~~ 1142 (1496)
+. .. .+. .|. .+.+.++ .++++-..|..++..+.
T Consensus 260 ------------l~--------~l----~~~--kWr-------------------tK~aslellg~m~~~ap~qLs~~lp 294 (569)
T KOG1242|consen 260 ------------LG--------SL----LEA--KWR-------------------TKMASLELLGAMADCAPKQLSLCLP 294 (569)
T ss_pred ------------HH--------HH----HHH--hhh-------------------hHHHHHHHHHHHHHhchHHHHHHHh
Confidence 00 00 000 231 2334333 34454444444443333
Q ss_pred HHhhHHHHHHHhhcCcchHHHHHHHHHhhhhhhccccccCchhhhhhhhhhhhhhccccccccCCCCCCChhhhHHHHHH
Q 000450 1143 MLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVG 1222 (1496)
Q Consensus 1143 ~~~~~~~~~l~~~~~~~~~~~ai~l~~~gf~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 1222 (1496)
.+.|.+..-+.|.+.-.|.+|++-+-+=- ++=+ .+||.+.+- .++.|++.|+- -...|-..|.+
T Consensus 295 -~iiP~lsevl~DT~~evr~a~~~~l~~~~-svid---N~dI~~~ip---~Lld~l~dp~~--------~~~e~~~~L~~ 358 (569)
T KOG1242|consen 295 -DLIPVLSEVLWDTKPEVRKAGIETLLKFG-SVID---NPDIQKIIP---TLLDALADPSC--------YTPECLDSLGA 358 (569)
T ss_pred -HhhHHHHHHHccCCHHHHHHHHHHHHHHH-Hhhc---cHHHHHHHH---HHHHHhcCccc--------chHHHHHhhcc
Confidence 33377778888899999999999885433 2422 125555542 23344432210 11112222221
Q ss_pred HHhHhHHhcChhHHHHHHHHHHhhc-CCCC-ccchhhHHHHH-HHH--hCChhHHHHhHHHHHHHhhhhcCCCChhhhhh
Q 000450 1223 ILLPSLAMADILGFLTVVESQIWST-ASDS-PVHLVSIMTII-RVV--RGSPRNVAQHLDKVVNFILQTMDPGNSVMRKT 1297 (1496)
Q Consensus 1223 ~~l~~ia~~~~~~f~~~~~~~i~~~-~~~~-~~~~~~~~~l~-~~i--~~~p~~~~~~l~~~~~~~~~~lDp~~~~~r~~ 1297 (1496)
..+ ++..++|.. ..|.-.+.|. +.++ ..+ ...-.++ .+. =..|.++.++|+.++.-+=+.++--.|.-|..
T Consensus 359 ttF--V~~V~~psL-almvpiL~R~l~eRst~~k-r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 359 TTF--VAEVDAPSL-ALMVPILKRGLAERSTSIK-RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred eee--eeeecchhH-HHHHHHHHHHHhhccchhh-hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHH
Confidence 111 444444332 2222222222 1112 121 1111111 111 23688999999999988866655338886765
Q ss_pred hhhHHHHHHHHHHcccCeeec
Q 000450 1298 CLHTSMAALKEIVHVFPMVSL 1318 (1496)
Q Consensus 1298 ~l~~~~~~l~~~~~~~p~v~~ 1318 (1496)
.... |..+.++--++.|
T Consensus 435 aarA----L~~l~e~~g~~~f 451 (569)
T KOG1242|consen 435 AARA----LGALLERLGEVSF 451 (569)
T ss_pred HHHH----HHHHHHHHHhhcc
Confidence 5444 4444455556666
No 406
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=45.82 E-value=6.9e+02 Score=31.14 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=44.4
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC-CCCcEEEEEcCCCCE
Q 000450 621 VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-PNYPAKVVWDCPRGY 683 (1496)
Q Consensus 621 ~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH-~~~V~~V~~spdg~~ 683 (1496)
.+++..+++||+ ++.+|.-..+|.+.+.+.+-.+.+..+.-. ...+..+.|..++..
T Consensus 216 ~~~i~~iavSpn------g~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 216 DGPIIKIAVSPN------GKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCCeEEEEECCC------CCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 468999999999 899999999999999987666666665533 346778888876543
No 407
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=45.19 E-value=55 Score=41.15 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=46.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-----------
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL----------- 659 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~----------- 659 (1496)
|.+|+..+.+ .|.+||..+++.++.+... +|..|.|+++ +..++-.+.| ++.+++.+..
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~------g~~val~t~~-~i~il~~~~~~~~~~~~~g~e 186 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD------GELVALVTKD-SIYILKYNLEAVAAIPEEGVE 186 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT------SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-G
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC------CCEEEEEeCC-eEEEEEecchhcccccccCch
Confidence 4556666554 7999999999999998754 4999999998 8888888755 6777764422
Q ss_pred cEEEEecCCCCCcEEEEEcCC
Q 000450 660 RVERMFPGHPNYPAKVVWDCP 680 (1496)
Q Consensus 660 ~~l~~~~gH~~~V~~V~~spd 680 (1496)
.....+..-...|.+.+|..|
T Consensus 187 ~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 187 DAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp GGEEEEEEE-S--SEEEEETT
T ss_pred hceEEEEEecceeEEEEEEcC
Confidence 022222222346777788655
No 408
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=44.66 E-value=51 Score=40.02 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=41.7
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 648 DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
.+...++|+++++....... ...+....|+|+|++++.... +.|++++..+++..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~---------~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD---------NNLYLRDLATGQET 76 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET---------TEEEEESSTTSEEE
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec---------CceEEEECCCCCeE
Confidence 46788999999776554443 567889999999999987764 68999999888544
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=44.48 E-value=1.1e+02 Score=38.23 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=49.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
..+++.+|.-|-|++||--.-+....+++-...|..|..+.+|+++++.|.. .+-+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~---------yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN---------YLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc---------eEEEEecc
Confidence 4589999999999999966555556678888889999999999999999985 67777764
No 410
>PHA02713 hypothetical protein; Provisional
Probab=44.34 E-value=93 Score=40.42 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=44.0
Q ss_pred CCEEEEEeCC------CcEEEEECCC-Cc--EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 639 SDCFLSVGED------FSVALASLET-LR--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 639 g~~l~Sgs~D------gsV~lWdl~~-~~--~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
+++.+.||.+ .+|..||.++ .+ .+..++........+.. +++..++|+.| +..++..||..|.
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~------~~~~~e~yd~~~~ 535 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYE------SYMLQDTFNVYTY 535 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeec------ceeehhhcCcccc
Confidence 5666667654 2467899886 33 33444433333333443 57777888877 1137889999887
Q ss_pred eEEEEEeCCC
Q 000450 710 ARERVLRGTA 719 (1496)
Q Consensus 710 ~~~~~l~gh~ 719 (1496)
+-......|.
T Consensus 536 ~W~~~~~~~~ 545 (557)
T PHA02713 536 EWNHICHQHS 545 (557)
T ss_pred cccchhhhcC
Confidence 7655555554
No 411
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=44.14 E-value=5.9e+02 Score=31.89 Aligned_cols=158 Identities=17% Similarity=0.176 Sum_probs=85.8
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCceeeeEEee--ccccceeEeeeccccccccCcccccccccccccccccc-cCCCCE
Q 000450 28 PPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLC--GHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS-SLDNGA 104 (1496)
Q Consensus 28 g~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~--GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~-s~d~~~ 104 (1496)
...|++|+..|.+++++... .+..+-.++. .-..||-.++. |+| +.....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~---~~~~~~~lllE~~l~~PILqv~~------------------------G~F~s~~~~~ 89 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSG---NEFQPEDLLLETQLKDPILQVEC------------------------GKFVSGSEDL 89 (418)
T ss_pred ccEEEEeccccEEEEEccCC---CCCCCccEEEEEecCCcEEEEEe------------------------ccccCCCCcc
Confidence 47999999999999999863 2223323332 23568988872 224 222322
Q ss_pred EEEEeCCCeEEEEECC--CCeEEEeecCCCCCCCCc-----EEEEcCCCCeEEEEcccccccCCcccccccccccccccc
Q 000450 105 LISACTDGVLCVWSRS--SGHCRRRRKLPPWVGSPS-----VICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVS 177 (1496)
Q Consensus 105 LaSas~DG~l~VWdv~--~G~ci~~~~l~~~~g~~~-----~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~ 177 (1496)
.+..=.-..+.|+.+. +|.. .+|... .-+.++....=+|+|.. . .+.
T Consensus 90 ~LaVLhP~kl~vY~v~~~~g~~--------~~g~~~~L~~~yeh~l~~~a~nm~~G~F-g------------g~~----- 143 (418)
T PF14727_consen 90 QLAVLHPRKLSVYSVSLVDGTV--------EHGNQYQLELIYEHSLQRTAYNMCCGPF-G------------GVK----- 143 (418)
T ss_pred eEEEecCCEEEEEEEEecCCCc--------ccCcEEEEEEEEEEecccceeEEEEEEC-C------------CCC-----
Confidence 3333444566666662 1110 001111 11233333344555543 0 001
Q ss_pred cccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECC
Q 000450 178 EDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPIS 248 (1496)
Q Consensus 178 ~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~ 248 (1496)
..+......++|.+.+++-.+......+.. ..-|+|+.++.-. +.+++++++..+.-+...
T Consensus 144 -~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t--------Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 144 -GRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT--------DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred -CceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC--------CEEEEecCceeEEEecHH
Confidence 112222344568888888766544444434 7788888887622 557777888888888764
No 412
>PRK10115 protease 2; Provisional
Probab=43.35 E-value=3.2e+02 Score=36.51 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=65.1
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEE-e----CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSG-S----MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SG-s----~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~ 647 (1496)
+..+.++|| +++|+-+ + ....|++-|+.+|+.+........ ..+.|.+| ++.|+-...
T Consensus 129 l~~~~~Spd---------g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D------~~~~~y~~~ 191 (686)
T PRK10115 129 LGGMAITPD---------NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAND------SWTFYYVRK 191 (686)
T ss_pred EeEEEECCC---------CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeC------CCEEEEEEe
Confidence 455677886 5555433 2 334688999988874322212222 45899998 664444332
Q ss_pred -C-----CcEEEEECCCC--cEEEEecCCCCCcE-EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 648 -D-----FSVALASLETL--RVERMFPGHPNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 648 -D-----gsV~lWdl~~~--~~l~~~~gH~~~V~-~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
+ ..|.++++.++ +-...+........ .+..+.|+++++..+.. ..++.+.+|+.
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~-----~~~~~~~l~~~ 254 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS-----ATTSEVLLLDA 254 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC-----CccccEEEEEC
Confidence 2 46788888877 33444443333333 23334488888766554 12367899985
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=43.09 E-value=3.5e+02 Score=33.84 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=28.7
Q ss_pred CCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcC-CCCeEEEEcc
Q 000450 111 DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP-SNPRYVCIGC 154 (1496)
Q Consensus 111 DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s-~~~~ll~~G~ 154 (1496)
..+|.+||+.+++.+++..+....+.|..|+++. |+..+-.+|+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~ 265 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGC 265 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEE
Confidence 3479999999999999999875444577788776 4444444444
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=42.66 E-value=4.7e+02 Score=31.28 Aligned_cols=104 Identities=10% Similarity=0.088 Sum_probs=54.2
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg 649 (1496)
.+.+..+...+| +++++.++.-....-||--...-...-+.-...|..+.|.|+ +.+.+ ....+
T Consensus 144 ~gs~~~~~r~~d---------G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~------~~lw~-~~~Gg 207 (302)
T PF14870_consen 144 SGSINDITRSSD---------GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD------GNLWM-LARGG 207 (302)
T ss_dssp ---EEEEEE-TT---------S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT------S-EEE-EETTT
T ss_pred cceeEeEEECCC---------CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCC------CCEEE-EeCCc
Confidence 466777777776 788877765555567885322122222234578999999998 66555 44888
Q ss_pred cEEEEEC-CCCcEEEE--ecC--CCCCcEEEEEcCCCCEEEEEEc
Q 000450 650 SVALASL-ETLRVERM--FPG--HPNYPAKVVWDCPRGYIACLCR 689 (1496)
Q Consensus 650 sV~lWdl-~~~~~l~~--~~g--H~~~V~~V~~spdg~~L~tgs~ 689 (1496)
.|+.=+. ...+.... .+. -.-.+..++|.+++...++|+.
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 8887762 22222111 111 1224789999999887776655
No 415
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=42.23 E-value=1.8e+02 Score=34.65 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=63.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccccccccc
Q 000450 101 DNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDK 180 (1496)
Q Consensus 101 d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~ 180 (1496)
++++.++-+..|++.-+|.++|+......+| |.+..+.++ |+++.+|...+... ..|.-+ .+ ++
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vp---G~~rGL~f~---G~llvVgmSk~R~~-----~~f~gl----pl-~~ 275 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP---GFTRGLAFA---GDFAFVGLSKLRES-----RVFGGL----PI-EE 275 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECC---CCCccccee---CCEEEEEeccccCC-----CCcCCC----ch-hh
Confidence 5666778888899999998889877777788 777777766 77887776522210 111100 01 11
Q ss_pred CCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEe
Q 000450 181 EVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVV 222 (1496)
Q Consensus 181 ~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s 222 (1496)
+ .+...|.+.++|..|+.++..+.- .-.++-+..+.+.
T Consensus 276 ~---l~~~~CGv~vidl~tG~vv~~l~f-eg~v~EifdV~vL 313 (335)
T TIGR03032 276 R---LDALGCGVAVIDLNSGDVVHWLRF-EGVIEEIYDVAVL 313 (335)
T ss_pred h---hhhhcccEEEEECCCCCEEEEEEe-CCceeEEEEEEEe
Confidence 1 112249999999999998876643 1122335555555
No 416
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=41.35 E-value=72 Score=34.85 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=51.8
Q ss_pred cCCCChhhhhhhhhHHHHHHHHHHcccCeeecCCCCceEEeecCcCcccCceEEEEECccccEEE-EEecCCCCCCCCCC
Q 000450 1287 MDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIK-VLDASGPPGLPRES 1365 (1496)
Q Consensus 1287 lDp~~~~~r~~~l~~~~~~l~~~~~~~p~v~~~~~tqrlavg~~~g~~~~~~i~~ydl~t~~~~~-~~~~h~~~~~~~~~ 1365 (1496)
|....+.+....++.++..+..+.++ .. ..+.++++-+-.-+-......||||++.+-+. .+.+||
T Consensus 4 l~~~~~~l~~~~~~~a~~~~~~~~~~-~~----~~~~~l~iIDfs~pS~~~R~~v~Dl~~~~~l~~~~VaHG-------- 70 (176)
T PF13645_consen 4 LNLEAPKLSPKAFQKALKAYQCAKKK-KI----YNKDILTIIDFSKPSGEKRFFVIDLKKGKLLYNTLVAHG-------- 70 (176)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHhc-cC----CCCCeEEEEECCCCCCCCeEEEEECCCCEEEEeeeeecc--------
Confidence 44445566678888888888777755 11 14445555444333335678999999996665 699996
Q ss_pred CcccccceEEEEECCC
Q 000450 1366 DSVATTVISALIFSPD 1381 (1496)
Q Consensus 1366 ~~~~~~~i~a~~fs~d 1381 (1496)
..++.-.|-.||..
T Consensus 71 --~gsg~~~a~~FSN~ 84 (176)
T PF13645_consen 71 --RGSGNLYATSFSNR 84 (176)
T ss_pred --cCCCCCccccCcCC
Confidence 33455557788755
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=40.37 E-value=3.5e+02 Score=31.28 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=65.0
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEe-CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs-~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dgs 650 (1496)
.+...+++++ ++.++.-. .++.-.+|-...+....... ....+..-.|.++ +........+..
T Consensus 25 ~~~s~AvS~d---------g~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~------g~~W~v~~~~~~ 88 (253)
T PF10647_consen 25 DVTSPAVSPD---------GSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPD------GWVWTVDDGSGG 88 (253)
T ss_pred cccceEECCC---------CCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCC------CCEEEEEcCCCc
Confidence 5778888887 55443333 33333344333333333321 2236777788887 666666666666
Q ss_pred EEEEE-CCCCcEE-EEe--cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 651 VALAS-LETLRVE-RMF--PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 651 V~lWd-l~~~~~l-~~~--~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.+++. ..+++.. ... ..-...|..+.+||||..++.-..+ .+++.|+|=-+
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~-----~~~~~v~va~V 143 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVED-----GGGGRVYVAGV 143 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEec-----CCCCeEEEEEE
Confidence 67663 3333322 111 2112279999999999999877754 11267777654
No 418
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.75 E-value=5e+02 Score=30.65 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=59.4
Q ss_pred CCEEEEEeCCCc-EEEEECCCCceEEEE--------cccCCCEEEEEECCCCCCCCCCCEEEEEeCC-----CcEEEEEC
Q 000450 591 NEVLVSGSMDCS-IRIWDLGSGNLITVM--------HHHVAPVRQIILSPPQTEHPWSDCFLSVGED-----FSVALASL 656 (1496)
Q Consensus 591 ~~~L~SGs~Dgt-V~lWDl~tg~~l~~~--------~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D-----gsV~lWdl 656 (1496)
..-++-+-.-|+ ..++|....+.+.++ .+|. .|+|| |.+|...-.| |.|-|||.
T Consensus 80 ~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~d------G~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 80 PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPD------GRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCC------CcEEEeecCCCCCCCceEEEEec
Confidence 344444444443 346787776655443 3443 37888 8877765444 78999999
Q ss_pred CCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEE
Q 000450 657 ETL-RVERMFPGHPNYPAKVVWDCPRGYIACLC 688 (1496)
Q Consensus 657 ~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs 688 (1496)
+.+ +.+-.++.|.-....+.|.+||+.|+++.
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 753 45678888888889999999999998765
No 419
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=39.67 E-value=6e+02 Score=31.41 Aligned_cols=177 Identities=13% Similarity=0.101 Sum_probs=81.9
Q ss_pred eeccccccCC--E-EEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCcc-EEEEEEecCCCCcccCcCCC
Q 000450 517 VISESFYAPY--A-IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGWSFNE 592 (1496)
Q Consensus 517 ~~s~~~f~P~--~-lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~-V~~La~spd~~~~~~~~~~~ 592 (1496)
|..+..|.++ + |..+..||.-.++..+ .++++..+ |..+.+. .....++|+ ++
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~lD-------------L~t~~i~Q-LTdg~g~~~~g~~~s~~---------~~ 93 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLD-------------LATGEITQ-LTDGPGDNTFGGFLSPD---------DR 93 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEEE-------------TTT-EEEE----SS-B-TTT-EE-TT---------SS
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEEE-------------cccCEEEE-CccCCCCCccceEEecC---------CC
Confidence 3333445554 4 4445558877775555 33444333 3332211 112344565 45
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe---C-------------------CCc
Q 000450 593 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---E-------------------DFS 650 (1496)
Q Consensus 593 ~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs---~-------------------Dgs 650 (1496)
.++=-.....|+--|+.+++....+......+-...|..+. ++..++-.- . ...
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~----d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANS----DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-T----TSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCC----CccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 44434455688889999988766666666555444443221 033433221 1 123
Q ss_pred EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCCcee
Q 000450 651 VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMF 724 (1496)
Q Consensus 651 V~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~a~vi~ 724 (1496)
|.-.|+++|+....+. -...+..+.|+|.+..+++-|.. |-+|.. .-|||-+.+ |...+.+..|...+.+
T Consensus 170 i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHE--Gpw~~V-d~RiW~i~~dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHE--GPWDLV-DQRIWTINTDGSNVKKVHRRMEGESV 240 (386)
T ss_dssp EEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE---S-TTTS-S-SEEEEETTS---EESS---TTEEE
T ss_pred EEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEecc--CCccee-ceEEEEEEcCCCcceeeecCCCCccc
Confidence 4455777777654443 34567889999999999988866 666631 237787654 5556666666544433
No 420
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.78 E-value=3.9e+02 Score=31.69 Aligned_cols=117 Identities=13% Similarity=0.053 Sum_probs=73.2
Q ss_pred cCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccC-CCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 568 gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
|-+..|.+|.|+|+ .+.|++-.+...-.+|=...|+.++++.... ..--.+.+.-+ ++++++-=
T Consensus 83 g~~~nvS~LTynp~---------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~------n~fvi~dE 147 (316)
T COG3204 83 GETANVSSLTYNPD---------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG------NQFVIVDE 147 (316)
T ss_pred cccccccceeeCCC---------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC------CEEEEEeh
Confidence 44455999999998 5667777777777788888899998875321 11233444443 44544544
Q ss_pred CCCcEEEEECCCCcEEE----------EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 647 EDFSVALASLETLRVER----------MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 647 ~DgsV~lWdl~~~~~l~----------~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
.|+.+.++.+.....+. ........-..++|.|.+..|.++-.- .-+.|+.+.
T Consensus 148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr--------~P~~I~~~~ 210 (316)
T COG3204 148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER--------NPIGIFEVT 210 (316)
T ss_pred hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc--------CCcEEEEEe
Confidence 56777666665432111 111123456789999998888877665 456665554
No 421
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=36.05 E-value=1.1e+02 Score=36.54 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=47.9
Q ss_pred ceEEeecCcCcccCceEEEEECcc--ccEEEEEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCcEEEEEec
Q 000450 1323 TKLAVGDAIGDIKKASIRVYDMQS--VTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSL 1400 (1496)
Q Consensus 1323 qrlavg~~~g~~~~~~i~~ydl~t--~~~~~~~~~h~~~~~~~~~~~~~~~~i~a~~fs~dg~~l~~~s~~~~~~~~w~~ 1400 (1496)
.+|++|+.+| |.+.|+.. ++-.+++. +..|+.+.-.+.=..|++.|.+..+|+++.+
T Consensus 14 ~~lL~GTe~G------ly~~~~~~~~~~~~kl~~---------------~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 14 KWLLVGTEEG------LYVLNISDQPGTLEKLIG---------------RRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred cEEEEEeCCc------eEEEEcccCCCCeEEecC---------------cCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 6899999977 78888765 44556666 7899999999999999999988888999987
No 422
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=35.60 E-value=2.3e+02 Score=34.87 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=69.1
Q ss_pred ccCCcceEEEEecCCccEEEEEE-----ecCCCCcccCcCCCEEEEEeCCC--cEEEEECCCCceEEEEcccC-CCEEEE
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAA-----HRMVGTAKGWSFNEVLVSGSMDC--SIRIWDLGSGNLITVMHHHV-APVRQI 627 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~-----spd~~~~~~~~~~~~L~SGs~Dg--tV~lWDl~tg~~l~~~~~H~-~~V~~l 627 (1496)
|..||..+..|..+.+.-..+-| .+| | .++|+.+..|+ .+.+-|+.+++..+ ++.+. ......
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~d-----G---~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~ 86 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDD-----G---RKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGG 86 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TT-----S----EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCC-----C---CEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccce
Confidence 45566666666544443333333 333 1 35667666666 45666787777543 33322 212234
Q ss_pred EECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc--CCCCEEEEEEc----CCCCCC------
Q 000450 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD--CPRGYIACLCR----DHSRTS------ 695 (1496)
Q Consensus 628 ~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~s--pdg~~L~tgs~----D~sg~~------ 695 (1496)
.++|+ ++.++-....+.|+-.|+++++....+.-....+-...|. .|+.. +++.. |.....
T Consensus 87 ~~s~~------~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 87 FLSPD------DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp EE-TT------SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHH
T ss_pred EEecC------CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHH
Confidence 56677 6777767677899999999988766666666666556774 34444 44442 100000
Q ss_pred -----CCCCEEEEEECCCCeEEEEEe
Q 000450 696 -----DAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 696 -----D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
.....|.--|+++|+....+.
T Consensus 160 e~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp HHHHC---EEEEEEETTT--EEEEEE
T ss_pred HHHhhCCCceEEEEECCCCceeEEEe
Confidence 001357777899988765554
No 423
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=35.44 E-value=2.8e+02 Score=32.76 Aligned_cols=97 Identities=8% Similarity=0.088 Sum_probs=59.2
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe------CCCcEEEEECCCCcEEEEecCC-----C
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG------EDFSVALASLETLRVERMFPGH-----P 669 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs------~DgsV~lWdl~~~~~l~~~~gH-----~ 669 (1496)
..|++||..+.+-...-.+=.+.|+++.|.-+ .+.++.|. ....+..||+.+..- ..+.+- .
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~------~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASN------NQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecC------CEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCC
Confidence 46999998876654444445678999999754 56676664 467889999887643 333332 3
Q ss_pred CCcEEEEEc-CCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 670 NYPAKVVWD-CPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 670 ~~V~~V~~s-pdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
++|..+.+. .|+.-+.+++.- .++...|..||-..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~----~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRS----ANGSTFLMKYDGSS 124 (281)
T ss_pred CcEEEEEeeccCCceEEEecee----cCCCceEEEEcCCc
Confidence 677777773 244334333321 12225677786544
No 424
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=34.67 E-value=1.2e+02 Score=23.98 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=26.5
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000450 639 SD-CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1496)
Q Consensus 639 g~-~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~ 677 (1496)
++ .+++.-.+++|.++|..+++.+..+.. ......++|
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 45 555555689999999999988887765 233445554
No 425
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=33.75 E-value=42 Score=25.43 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 000450 1006 LQLLVSFWQDESEHVRMAARSLFH 1029 (1496)
Q Consensus 1006 l~~La~~wqd~~~~vr~aar~l~~ 1029 (1496)
+..|.+.-+|++++||++|=.-|.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~ 25 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLG 25 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456777889999999999876665
No 426
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.70 E-value=1.2e+02 Score=34.43 Aligned_cols=84 Identities=20% Similarity=0.360 Sum_probs=53.9
Q ss_pred CeeecCCCCceEEeecCcCcccCceEEEEECccccEEEEEecCCCCCCCC-C----CCcccccceEEEEECCCCCeEEEE
Q 000450 1314 PMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPR-E----SDSVATTVISALIFSPDGEGLVAF 1388 (1496)
Q Consensus 1314 p~v~~~~~tqrlavg~~~g~~~~~~i~~ydl~t~~~~~~~~~h~~~~~~~-~----~~~~~~~~i~a~~fs~dg~~l~~~ 1388 (1496)
|-+-+....+.|.+=+. +|.+.|||+++. |. ++..= +=+|= . ++......|+.+.++.+|.=||++
T Consensus 14 ~~~~l~~~~~~Ll~iT~-----~G~l~vWnl~~~-k~-~~~~~--Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITS-----SGLLYVWNLKKG-KA-VLPPV--SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred ceEEEEeCCCEEEEEeC-----CCeEEEEECCCC-ee-ccCCc--cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 44556667788888888 778999999987 54 23210 00000 0 011456789999999999999999
Q ss_pred ecCCc-----EEEEEec-cchhhh
Q 000450 1389 SEHGL-----MIRWWSL-GSVWWE 1406 (1496)
Q Consensus 1389 s~~~~-----~~~~w~~-~~~~~~ 1406 (1496)
|..+. .++-|.. ...||-
T Consensus 85 sng~~y~y~~~L~~W~~vsd~w~~ 108 (219)
T PF07569_consen 85 SNGDSYSYSPDLGCWIRVSDSWWA 108 (219)
T ss_pred eCCCEEEeccccceeEEeccchhh
Confidence 97432 3445744 555544
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=33.16 E-value=2.3e+02 Score=37.58 Aligned_cols=102 Identities=11% Similarity=0.030 Sum_probs=66.7
Q ss_pred CCEEEEEeCCCcEEEEECCC-------C-------------ceEEEEcccCCCEEEEEEC--CCCCCCCCCCEEEEEeCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGS-------G-------------NLITVMHHHVAPVRQIILS--PPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~t-------g-------------~~l~~~~~H~~~V~~l~~s--Pd~~~~~~g~~l~Sgs~D 648 (1496)
.+.|+.+..||.|.+|.+++ . ++...+.. ...++.+++. .. .+++|.++.-
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~------~rlIAVSsNs 186 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKK------SRLIAVSSNS 186 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCc------ceEEEEecCC
Confidence 67999999999999997631 0 01233333 3378999987 54 6788888888
Q ss_pred CcEEEEECCC--CcE-EEEecCCCCCcEEEEEcCCC---C---EEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 649 FSVALASLET--LRV-ERMFPGHPNYPAKVVWDCPR---G---YIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 649 gsV~lWdl~~--~~~-l~~~~gH~~~V~~V~~spdg---~---~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
..|.||-... .+. ...-..|...|-+|.|-++. . +|++++-. |.+-+|++.
T Consensus 187 ~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~--------G~v~~~~I~ 246 (717)
T PF08728_consen 187 QEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS--------GEVWTFKIK 246 (717)
T ss_pred ceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEecc--------CcEEEEEEE
Confidence 8888875533 121 11111255678899996644 1 55666655 888888773
No 428
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.46 E-value=2.6e+02 Score=33.25 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=26.7
Q ss_pred HHHHHHhhcCcchHHHHH----HHHHhhhhhhccccc
Q 000450 1148 PLIKLVMATNEKYSSTAA----ELLAEGMESTWKTCI 1180 (1496)
Q Consensus 1148 ~~~~l~~~~~~~~~~~ai----~l~~~gf~~~w~~~~ 1180 (1496)
++..|+++.+.++|.+|+ -|.|+|+. +|..|=
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~-~~~~~~ 42 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQ-SLSKYS 42 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchh-hhccch
Confidence 455788889999999999 57789996 999885
No 429
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.90 E-value=1.1e+02 Score=24.10 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=18.6
Q ss_pred ceEEEEEEcCCCCEEEEE-eCC--CcEEEE
Q 000450 17 HRVTATSALTQPPTLYTG-GSD--GSILWW 43 (1496)
Q Consensus 17 h~Vtava~SpDg~~LaTG-s~D--G~I~lW 43 (1496)
..-.+.+|||||++|+=. ..+ |.--||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456788999999888844 455 666565
No 430
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=30.96 E-value=3.6e+02 Score=33.99 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=38.5
Q ss_pred eeEEEEeCCCcEEEEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEE
Q 000450 231 HYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIF 303 (1496)
Q Consensus 231 ~~llvas~dG~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~ 303 (1496)
+++++|+..|-|+|+|--..++ |.. ..++...+..|..+.+|+.++..|++...+
T Consensus 574 GyIa~as~kGDirLyDRig~rA-------------Kta-----lP~lG~aIk~idvta~Gk~ilaTCk~yllL 628 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRA-------------KTA-----LPGLGDAIKHIDVTANGKHILATCKNYLLL 628 (776)
T ss_pred ceEEEecCCCceeeehhhcchh-------------hhc-----CcccccceeeeEeecCCcEEEEeecceEEE
Confidence 5688889999999999544321 001 233445567788889999999999887554
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=30.29 E-value=1.2e+02 Score=34.28 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=44.2
Q ss_pred ecCCCC-ceEEeecCcCcccCceEEEEECccccEEEEEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCcEE
Q 000450 1317 SLNDTS-TKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMI 1395 (1496)
Q Consensus 1317 ~~~~~t-qrlavg~~~g~~~~~~i~~ydl~t~~~~~~~~~h~~~~~~~~~~~~~~~~i~a~~fs~dg~~l~~~s~~~~~~ 1395 (1496)
++|... ..|-|++. ...|.+|||. ..+++.+..= | . -++|..+.++.-|.||||.=.+.+.-
T Consensus 22 ~~c~~g~d~Lfva~~-----g~~Vev~~l~-~~~~~~~~~F-----~-----T-v~~V~~l~y~~~GDYlvTlE~k~~~~ 84 (215)
T PF14761_consen 22 AVCCGGPDALFVAAS-----GCKVEVYDLE-QEECPLLCTF-----S-----T-VGRVLQLVYSEAGDYLVTLEEKNKRS 84 (215)
T ss_pred eeeccCCceEEEEcC-----CCEEEEEEcc-cCCCceeEEE-----c-----c-hhheeEEEeccccceEEEEEeecCCc
Confidence 455555 66766544 5679999999 3355555521 1 1 47899999999999999998876654
No 432
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=29.94 E-value=9.1e+02 Score=27.85 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=62.2
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEE-CCCCceE-EEEcc--cCCCEEEEEECCCCCCCCCCCEEEEEe-
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD-LGSGNLI-TVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVG- 646 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWD-l~tg~~l-~~~~~--H~~~V~~l~~sPd~~~~~~g~~l~Sgs- 646 (1496)
.++...|.++ +...+....+...+++. ...++.. ..... -.+.|..+.++|| |..++-..
T Consensus 67 ~l~~PS~d~~---------g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpD------G~RvA~v~~ 131 (253)
T PF10647_consen 67 SLTRPSWDPD---------GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPD------GTRVAVVVE 131 (253)
T ss_pred ccccccccCC---------CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCC------CcEEEEEEe
Confidence 5666777775 56666655666666663 3334322 11111 1228999999999 77766655
Q ss_pred --CCCcEEEEECC---CC------cEEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 647 --EDFSVALASLE---TL------RVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 647 --~DgsV~lWdl~---~~------~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
.++.|.+=-+. .+ ..+.........+..+.|.+++.+++.+...
T Consensus 132 ~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 132 DGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred cCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 35666665442 23 1222222334578999999999877665543
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=29.44 E-value=7.8e+02 Score=30.05 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=55.9
Q ss_pred cEEEEECCC--Cc--eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-----Cc--EE-EEecC--
Q 000450 602 SIRIWDLGS--GN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-----LR--VE-RMFPG-- 667 (1496)
Q Consensus 602 tV~lWDl~t--g~--~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-----~~--~l-~~~~g-- 667 (1496)
.|.+++-.. |+ ....|.........+++.++ + ++++ +.+...++.|... ++ .+ ..+..
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~------G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~ 119 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG------G-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQI 119 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecC------C-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCC
Confidence 677776543 32 23445444445678888877 6 5554 3444333445431 12 22 22332
Q ss_pred --CCCCcEEEEEcCCCCEEEEEEcCCC------CCCCC-----CCEEEEEECCCCeEEEEEeCCC
Q 000450 668 --HPNYPAKVVWDCPRGYIACLCRDHS------RTSDA-----VDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 668 --H~~~V~~V~~spdg~~L~tgs~D~s------g~~D~-----dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
+...+..++|.|||.+.++-+..-. +..+. .|.|.-+|..+++....-.|+.
T Consensus 120 ~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r 184 (367)
T TIGR02604 120 NNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ 184 (367)
T ss_pred CcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC
Confidence 1344778999999976554332100 00000 1567777777766655444544
No 434
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=29.28 E-value=1.3e+02 Score=29.49 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhCChhHHHHhHHHHHHHhhhhcCCCChhhhhhhhhHHHHHH
Q 000450 1256 VSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAAL 1306 (1496)
Q Consensus 1256 ~~~~~l~~~i~~~p~~~~~~l~~~~~~~~~~lDp~~~~~r~~~l~~~~~~l 1306 (1496)
-+++.|..+.-.-+..+.+|+++++..||+|++=.+...|-...+....+.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~ 55 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNIS 55 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 456666555555566699999999999999999999988876555444433
No 435
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=29.26 E-value=3.4e+02 Score=35.72 Aligned_cols=60 Identities=5% Similarity=-0.020 Sum_probs=41.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEE--cCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 639 SDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVW--DCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~l~~~~-gH~~~V~~V~~--spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
++..+.-+.-..+.|||.+.+.....-. ...+.|..+.| .||+..+++.+.. +.|.++--
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~--------~~v~l~~Q 103 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP--------HHVLLYTQ 103 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC--------cEEEEEEc
Confidence 3333333344678999999887654322 34667999999 5788888887777 78888843
No 436
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.73 E-value=4.9e+02 Score=34.73 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=86.7
Q ss_pred cCCCCChhhHHHhhHHHHHHHhhcCcch----HHHHHHHHHhhhhhhccccccCchhhhhhhhhhhhhhccccccccCCC
Q 000450 1133 YPSLVKPTLAMLVVQPLIKLVMATNEKY----SSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQ 1208 (1496)
Q Consensus 1133 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ai~l~~~gf~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1208 (1496)
|.-.-.|++..+.-++..+++.+.|.=. --...|+|.++-. .-..|- ++..-+..+++++....-++.-.+.+
T Consensus 168 r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~~fr--~l~~~lV~iLk~l~~~~yspeydv~g 244 (866)
T KOG1062|consen 168 RFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALSYFR--DLVPSLVKILKQLTNSGYSPEYDVHG 244 (866)
T ss_pred HHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHHHHH--HHHHHHHHHHHHHhcCCCCCccCccC
Confidence 3334677777787788888886654322 3345677766321 111111 22222223334443222233334555
Q ss_pred CCCChhhhHHHHHHHHhHhHHhcCh--hHHHHHHHHHHhhc---------------------------------------
Q 000450 1209 HPAVPASIRETLVGILLPSLAMADI--LGFLTVVESQIWST--------------------------------------- 1247 (1496)
Q Consensus 1209 ~~~~~~~~r~~~~~~~l~~ia~~~~--~~f~~~~~~~i~~~--------------------------------------- 1247 (1496)
.+...-.+|- -++|-.++.-|+ ..-|..|--+|++.
T Consensus 245 i~dPFLQi~i---LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkF 321 (866)
T KOG1062|consen 245 ISDPFLQIRI---LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKF 321 (866)
T ss_pred CCchHHHHHH---HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 5555556662 233444444333 33444444444432
Q ss_pred --CCCCccchhhHHHHHHHHhCChhHHHHhHHHHHHHhhhhcCCCChhhhhhhhhHHHHHH
Q 000450 1248 --ASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAAL 1306 (1496)
Q Consensus 1248 --~~~~~~~~~~~~~l~~~i~~~p~~~~~~l~~~~~~~~~~lDp~~~~~r~~~l~~~~~~l 1306 (1496)
+.+.+..-++|..|.|+|.-.|..+..|=. .|+.||+-.+..+|++-|...+.++
T Consensus 322 L~n~d~NirYvaLn~L~r~V~~d~~avqrHr~----tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 322 LLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS----TILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred hcCCccceeeeehhhHHhhhcCCcHHHHHHHH----HHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 122233334555666777888877766644 4668888777888888888777654
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=28.14 E-value=7.3e+02 Score=26.13 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccc
Q 000450 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1496)
Q Consensus 96 g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~ 175 (1496)
|++....+.|+.++.-|.|.|-+.....-.... . ..+.....+...-+-+|+|..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--~---~~~i~~LNin~~italaaG~l-------------------- 58 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--Q---DSDISFLNINQEITALAAGRL-------------------- 58 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc--c---cCceeEEECCCceEEEEEEec--------------------
Q ss_pred cccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcccc
Q 000450 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1496)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~ 255 (1496)
.|+.. .++|+-++...+..+|+.++
T Consensus 59 -------------------------------------------------~~~~~-~D~LliGt~t~llaYDV~~N----- 83 (136)
T PF14781_consen 59 -------------------------------------------------KPDDG-RDCLLIGTQTSLLAYDVENN----- 83 (136)
T ss_pred -------------------------------------------------CCCCC-cCEEEEeccceEEEEEcccC-----
Q ss_pred ccCCCcccCCCccceeeeccCcccCceEEEEecCCc--EEEEEeCCeEEEEEcCCC
Q 000450 256 EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGN--IIALVLKDHCIFRLLGSG 309 (1496)
Q Consensus 256 ~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~--~l~t~~~~~~~~~l~d~~ 309 (1496)
.+++-.| ...++.++.+...+. .-+...+..|.++-+|..
T Consensus 84 ---~d~Fyke-----------~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 84 ---SDLFYKE-----------VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred ---chhhhhh-----------CccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
No 438
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=27.84 E-value=2.8e+02 Score=30.20 Aligned_cols=99 Identities=25% Similarity=0.214 Sum_probs=62.4
Q ss_pred hhhhhhhhhhhcCCCCChhhHHHhhHHHHHHHhhcCcchHHHHHHHH----HhhhhhhccccccCchhhhhhhhhhhhhh
Q 000450 1122 HIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELL----AEGMESTWKTCIGFEIPRLIGDIFFQIEC 1197 (1496)
Q Consensus 1122 ~i~~~~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ai~l~----~~gf~~~w~~~~~~~~~~~l~~~~~~~~~ 1197 (1496)
.++..+-|++.|+..+++- .+.+.+.+.|.+...|++|+-.+ ..||. -|+..+-.++...|.
T Consensus 8 ~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k~k~~l~~~~l~~l~-------- 73 (178)
T PF12717_consen 8 AIIALGDLCIRYPNLVEPY-----LPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-KVKGQLFSRILKLLV-------- 73 (178)
T ss_pred HHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-eehhhhhHHHHHHHc--------
Confidence 4555667999887766653 34555677788999999998655 45665 555443111111111
Q ss_pred ccccccccCCCCCCChhhhHHHHHHHHhHhHHhc-ChhHHHHHHHHHHhhcC
Q 000450 1198 VSNSSANLAGQHPAVPASIRETLVGILLPSLAMA-DILGFLTVVESQIWSTA 1248 (1496)
Q Consensus 1198 ~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~ia~~-~~~~f~~~~~~~i~~~~ 1248 (1496)
.+. ...|. .|+.++..++.. +|..|...+-.-|.+.+
T Consensus 74 ------------D~~-~~Ir~-~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 74 ------------DEN-PEIRS-LARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred ------------CCC-HHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 111 12343 488889999998 88888888777776554
No 439
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=23.85 E-value=2.4e+02 Score=28.55 Aligned_cols=69 Identities=12% Similarity=0.193 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhhcCCCCccchhhHHHHHHHHhCChh---HHHHhHHHHHHHhhhhcC----CCChhhhhhhhhH
Q 000450 1233 ILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPR---NVAQHLDKVVNFILQTMD----PGNSVMRKTCLHT 1301 (1496)
Q Consensus 1233 ~~~f~~~~~~~i~~~~~~~~~~~~~~~~l~~~i~~~p~---~~~~~l~~~~~~~~~~lD----p~~~~~r~~~l~~ 1301 (1496)
||.||..+.........+-.....++..+..+||+.|. ++..+-.+++..+++.=| |+.-..|.++|-.
T Consensus 1 ~PvYlrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alva 76 (114)
T PF10193_consen 1 RPVYLRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVA 76 (114)
T ss_dssp ----HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHH
T ss_pred CCchHHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHH
Confidence 57788887766542221222234678888889999999 999999999999998755 5555677777653
No 440
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.71 E-value=5.4e+02 Score=33.99 Aligned_cols=172 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred hchhhhhhhhhhhhcCCCCChhhHHHhhHHHHHHHhhcCcchHHHHHHHHHhhhhhhccccccCchhhhhhhhhhhhhhc
Q 000450 1119 MTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECV 1198 (1496)
Q Consensus 1119 ~~~~i~~~~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ai~l~~~gf~~~w~~~~~~~~~~~l~~~~~~~~~~ 1198 (1496)
|+++|.+...+-.-||..+.+..-|++. ||- |......++|+-.+.+==..==|+|+ ...-++ |+...
T Consensus 161 RKkAIl~lykvFLkYPeAlr~~FprL~E----kLe-DpDp~V~SAAV~VICELArKnPknyL--~LAP~f---fkllt-- 228 (877)
T KOG1059|consen 161 RKKAILLLYKVFLKYPEALRPCFPRLVE----KLE-DPDPSVVSAAVSVICELARKNPQNYL--QLAPLF---YKLLV-- 228 (877)
T ss_pred HHHHHHHHHHHHHhhhHhHhhhHHHHHH----hcc-CCCchHHHHHHHHHHHHHhhCCcccc--cccHHH---HHHHh--
Q ss_pred ccccccc---------------------CCCCCCChhhhHHHHHHHHh-----------HhHHhcChhHHHHHHHHHHhh
Q 000450 1199 SNSSANL---------------------AGQHPAVPASIRETLVGILL-----------PSLAMADILGFLTVVESQIWS 1246 (1496)
Q Consensus 1199 ~~~~~~~---------------------~~~~~~~~~~~r~~~~~~~l-----------~~ia~~~~~~f~~~~~~~i~~ 1246 (1496)
.|+|| ...++|..+.+++|.|-.+| ++-++.|=.+-|+-....+.-
T Consensus 229 --tSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~ 306 (877)
T KOG1059|consen 229 --TSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRI 306 (877)
T ss_pred --ccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhh
Q ss_pred cCCCCccchhhHHHHHH--HHhCChhHHHHhHHHHHHHhhhhcCCCChhhhhhhhhHHHHHHHH
Q 000450 1247 TASDSPVHLVSIMTIIR--VVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKE 1308 (1496)
Q Consensus 1247 ~~~~~~~~~~~~~~l~~--~i~~~p~~~~~~l~~~~~~~~~~lDp~~~~~r~~~l~~~~~~l~~ 1308 (1496)
.--++-++..-+-.|.. +.+.+|..+..+. |+||+|||--+..+|-+-|.....++.+
T Consensus 307 fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 307 FIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred hhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhhh
No 441
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=23.35 E-value=3.9e+02 Score=33.20 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeecccc----cee-EeeeccccccccCccccccc
Q 000450 13 TPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSA----PIA-DLSICYPAMVSRDGKAEHWK 87 (1496)
Q Consensus 13 ~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~----~Vt-~La~c~~~~~s~dg~~~~~~ 87 (1496)
..|...|..+-..|||++|+.-+. .++.+.++. +....-+..+....+ .|+ .+.
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~---~r~l~~rkl~~dspg~~~~~Vte~l~----------------- 275 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLD---KRSLQIRKLVDDSPGDSRHQVTEQLY----------------- 275 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeec---ccccchhhhhhcCCCchHHHHHHHHH-----------------
Q ss_pred ccccccccccccCCCCEEEEEeCCCeEEEE-ECCCC-----eEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCC
Q 000450 88 AENSSNVMGKSSLDNGALISACTDGVLCVW-SRSSG-----HCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQ 161 (1496)
Q Consensus 88 ~~~~~~~~g~~s~d~~~LaSas~DG~l~VW-dv~~G-----~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~ 161 (1496)
.-..+.-|...++||.+.-| |+.++ +.++..++. +.+..+..-....+-+..=+.
T Consensus 276 ----------lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~---pa~~~~l~pe~~rkgF~~l~~------ 336 (733)
T COG4590 276 ----------LLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLA---PAEVQFLLPETNRKGFYSLYR------ 336 (733)
T ss_pred ----------HHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccC---cccceeeccccccceEEEEcC------
Q ss_pred cccccccccccccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCc
Q 000450 162 LSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGR 241 (1496)
Q Consensus 162 l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~ 241 (1496)
++++..+.....+.+..-.- .+.+.-++++|. .+-+..-..|.
T Consensus 337 ---------------------------~G~L~~f~st~~~~lL~~~~----~~~~~~~~~Sp~------~~~Ll~e~~gk 379 (733)
T COG4590 337 ---------------------------NGTLQSFYSTSEKLLLFERA----YQAPQLVAMSPN------QAYLLSEDQGK 379 (733)
T ss_pred ---------------------------CCceeeeecccCcceehhhh----hcCcceeeeCcc------cchheeecCCc
Q ss_pred EEEEECCCC
Q 000450 242 LQLVPISKE 250 (1496)
Q Consensus 242 V~lWdl~~~ 250 (1496)
++++.+++.
T Consensus 380 i~~~~l~Nr 388 (733)
T COG4590 380 IRLAQLENR 388 (733)
T ss_pred eEEEEecCC
No 442
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=23.15 E-value=2.9e+02 Score=32.35 Aligned_cols=143 Identities=16% Similarity=0.165 Sum_probs=72.1
Q ss_pred HHHhhcCcchHHHHHHHHHhhhhhhccccccC-chhhhhhhhhhhhhhccccccccCCCCCCChhhhHHHHHHHHhHhHH
Q 000450 1151 KLVMATNEKYSSTAAELLAEGMESTWKTCIGF-EIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLA 1229 (1496)
Q Consensus 1151 ~l~~~~~~~~~~~ai~l~~~gf~~~w~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~ia 1229 (1496)
.++.+.+...|..|+++|+.-.+.+=...+.. ||.-++. |...... .......+ -.+|..+.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~---F~~~rl~------------D~~~~~~~--l~gl~~L~ 68 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLD---FFCSRLD------------DHACVQPA--LKGLLALV 68 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHH---HHHHHhc------------cHhhHHHH--HHHHHHHH
Confidence 44555677889999999998887332234444 4433332 1122111 00111221 11222222
Q ss_pred -hcC-hhHHHHHHHHHHh-hcCCC--CccchhhHHHHH-HHHhCChhHHHHhHHHHHHHhhhhcCCC-ChhhhhhhhhHH
Q 000450 1230 -MAD-ILGFLTVVESQIW-STASD--SPVHLVSIMTII-RVVRGSPRNVAQHLDKVVNFILQTMDPG-NSVMRKTCLHTS 1302 (1496)
Q Consensus 1230 -~~~-~~~f~~~~~~~i~-~~~~~--~~~~~~~~~~l~-~~i~~~p~~~~~~l~~~~~~~~~~lDp~-~~~~r~~~l~~~ 1302 (1496)
+.+ ++.-+..|.+.+. +...+ .+..+.....|+ .+++++...+..+=...+..+++.+|-- +| +||..+
T Consensus 69 ~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDP----RnLl~~ 144 (262)
T PF14500_consen 69 KMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDP----RNLLLS 144 (262)
T ss_pred hCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCH----HHHHHH
Confidence 221 1222333333332 12212 222233344443 4778877777666677888888888743 44 377777
Q ss_pred HHHHHHHHcccC
Q 000450 1303 MAALKEIVHVFP 1314 (1496)
Q Consensus 1303 ~~~l~~~~~~~p 1314 (1496)
|.+++.+.+.|+
T Consensus 145 F~l~~~i~~~~~ 156 (262)
T PF14500_consen 145 FKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhcc
Confidence 777777666666
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=22.99 E-value=6.1e+02 Score=30.96 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=36.5
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeCC-------------------CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000450 622 APVRQIILSPPQTEHPWSDCFLSVGED-------------------FSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 622 ~~V~~l~~sPd~~~~~~g~~l~Sgs~D-------------------gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~ 682 (1496)
.....+.|.|| |.+.++.+.. +.|.-+|.++++......++ .....++|+|+|+
T Consensus 124 ~~~~~l~~gpD------G~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 124 HSLNSLAWGPD------GWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGD 196 (367)
T ss_pred ccccCceECCC------CCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCC
Confidence 34678899998 7766655521 34555566555543333443 3357889999888
Q ss_pred EEEE
Q 000450 683 YIAC 686 (1496)
Q Consensus 683 ~L~t 686 (1496)
++++
T Consensus 197 l~~t 200 (367)
T TIGR02604 197 VFFC 200 (367)
T ss_pred EEEE
Confidence 7765
No 444
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=22.47 E-value=3.1e+02 Score=37.16 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=54.8
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-----cEEEEec---CCC-------CCcEEEEEcCCCCEEEE
Q 000450 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-----RVERMFP---GHP-------NYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 622 ~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-----~~l~~~~---gH~-------~~V~~V~~spdg~~L~t 686 (1496)
.+...|+|+|.. ...||.+...|...||++..+ ..++... |+- +.-..|.|.++-..|++
T Consensus 146 ~~~aDv~FnP~~-----~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv 220 (765)
T PF10214_consen 146 FPHADVAFNPWD-----QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV 220 (765)
T ss_pred CccceEEeccCc-----cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE
Confidence 356789999974 569999999999999999211 1112221 221 12347899999888888
Q ss_pred EEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 687 LCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 687 gs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
.+. ..+.++|+++....
T Consensus 221 ~~r---------~~l~~~d~~~~~~~ 237 (765)
T PF10214_consen 221 CNR---------SKLMLIDFESNWQT 237 (765)
T ss_pred EcC---------CceEEEECCCCCcc
Confidence 777 48999999987653
No 445
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=22.27 E-value=4.8e+02 Score=34.78 Aligned_cols=120 Identities=8% Similarity=0.030 Sum_probs=71.0
Q ss_pred EEEEEEcCCcEEEEEecccccC-CCC---CCc-cccCCcceEEEEecCCccEEEEEEe--cCCCCcccCcCCCEEEEEeC
Q 000450 527 AIVYGFFSGEIEVIQFDLFERH-NSP---GAS-LKVNSHVSRQYFLGHTGAVLCLAAH--RMVGTAKGWSFNEVLVSGSM 599 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~-d~~---~~~-~d~~s~~~~~~l~gH~~~V~~La~s--pd~~~~~~~~~~~~L~SGs~ 599 (1496)
.|+.+.+||.+.+|.-+.+... ... ... ......++...+. -...++.|+++ .. .+++|.+++
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~---------~rlIAVSsN 185 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKK---------SRLIAVSSN 185 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCc---------ceEEEEecC
Confidence 6888999999999754332211 000 000 0001112222333 23478999998 43 678888888
Q ss_pred CCcEEEEECCCC--ceEE-EEcccCCCEEEEEECCCCCCCCCCC-EEEEEeCCCcEEEEECC
Q 000450 600 DCSIRIWDLGSG--NLIT-VMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLE 657 (1496)
Q Consensus 600 DgtV~lWDl~tg--~~l~-~~~~H~~~V~~l~~sPd~~~~~~g~-~l~Sgs~DgsV~lWdl~ 657 (1496)
-..|.||-.... +..+ .-..|..-|-+|.|-++. ..+.|. .+++++-.|.+.+|++.
T Consensus 186 s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~-~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 186 SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDD-LDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred CceEEEEEEeccccccccccccccccCCCeeEeecCC-CCCccceEEEEEeccCcEEEEEEE
Confidence 888888766542 1111 111255568899998763 122243 78889999999999874
No 446
>PHA03098 kelch-like protein; Provisional
Probab=22.20 E-value=6.8e+02 Score=32.10 Aligned_cols=155 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC------
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD------ 600 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D------ 600 (1496)
..+.|+.++....-... .++..+.+=...-.-........+..-+ +.+.+.||.+
T Consensus 345 lyv~GG~~~~~~~~~v~----------~yd~~~~~W~~~~~lp~~r~~~~~~~~~---------~~iYv~GG~~~~~~~~ 405 (534)
T PHA03098 345 IYVIGGIYNSISLNTVE----------SWKPGESKWREEPPLIFPRYNPCVVNVN---------NLIYVIGGISKNDELL 405 (534)
T ss_pred EEEEeCCCCCEecceEE----------EEcCCCCceeeCCCcCcCCccceEEEEC---------CEEEEECCcCCCCccc
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc--------EEEEECCCCcEEEEecCCCCCc
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS--------VALASLETLRVERMFPGHPNYP 672 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dgs--------V~lWdl~~~~~l~~~~gH~~~V 672 (1496)
..+..||..+.+-...-......-...+...+ +..++.||.+.. +.+||..+++-...-.......
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~------~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~ 479 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYHD------GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI 479 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEEEC------CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCC-CCEEEEEECCCCe
Q 000450 673 AKVVWDCPRGYIACLCRDHSRTSDA-VDVLFIWDVKTGA 710 (1496)
Q Consensus 673 ~~V~~spdg~~L~tgs~D~sg~~D~-dg~V~VWDl~tg~ 710 (1496)
..-...-+++..+.|+.+ ... .+.|.++|.++.+
T Consensus 480 ~~~~~~~~~~iyv~GG~~----~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 480 NASLCIFNNKIYVVGGDK----YEYYINEIEVYDDKTNT 514 (534)
T ss_pred cceEEEECCEEEEEcCCc----CCcccceeEEEeCCCCE
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=22.13 E-value=4e+02 Score=28.82 Aligned_cols=35 Identities=11% Similarity=-0.044 Sum_probs=26.6
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC
Q 000450 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1496)
Q Consensus 623 ~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1496)
.|.+++|+|.+.....+..|+....++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999976554444567777889999999754
No 448
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=21.86 E-value=1.4e+02 Score=35.35 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.4
Q ss_pred ceEEEEECccccEEEEEecC
Q 000450 1337 ASIRVYDMQSVTKIKVLDAS 1356 (1496)
Q Consensus 1337 ~~i~~ydl~t~~~~~~~~~h 1356 (1496)
+-|+||||++++-|+++++|
T Consensus 88 ~glIV~dl~~~~s~Rv~~~~ 107 (287)
T PF03022_consen 88 PGLIVYDLATGKSWRVLHNS 107 (287)
T ss_dssp CEEEEEETTTTEEEEEETCG
T ss_pred CcEEEEEccCCcEEEEecCC
Confidence 35999999999999999965
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=20.76 E-value=1e+03 Score=28.61 Aligned_cols=118 Identities=8% Similarity=0.020 Sum_probs=63.7
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEE-EEECCCCceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR-IWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~-lWDl~tg~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~ 647 (1496)
.+.+.++.+.|+ +.+++.| ..|.+. .+|- .++.- .....-...++.+.+.|+ ++.++. +.
T Consensus 172 ~g~~~~i~~~~~---------g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~------g~~~~v-g~ 233 (334)
T PRK13684 172 AGVVRNLRRSPD---------GKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPD------GNLWML-AR 233 (334)
T ss_pred cceEEEEEECCC---------CeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCC------CCEEEE-ec
Confidence 346778888875 5555555 445443 2221 22212 122233457889999887 665554 56
Q ss_pred CCcEEEEECCCCcEEEEecCC----CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 648 DFSVALASLETLRVERMFPGH----PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 648 DgsV~lWdl~~~~~l~~~~gH----~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.|.+++=+-+.+..-.....+ ...+..+.+.|++..++++ .+ |.|+ .....|+.....
T Consensus 234 ~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~--------G~v~-~S~d~G~tW~~~ 295 (334)
T PRK13684 234 GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GN--------GTLL-VSKDGGKTWEKD 295 (334)
T ss_pred CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CC--------CeEE-EeCCCCCCCeEC
Confidence 676654334444433222111 2347889999988766654 44 6555 344555554443
No 450
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.66 E-value=4.5e+02 Score=31.17 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=61.4
Q ss_pred ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC-CCCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000450 619 HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-PNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 619 ~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH-~~~V~~V~~spdg~~L~tgs~D~sg~~D~ 697 (1496)
+-...|.++.|+|+ .+.+.+......-.||=-.+|+.+++++-. -.....|.|..++.|.++-=.+
T Consensus 83 g~~~nvS~LTynp~------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~------- 149 (316)
T COG3204 83 GETANVSSLTYNPD------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERD------- 149 (316)
T ss_pred cccccccceeeCCC------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhc-------
Confidence 33445899999999 778888877777777777789999888632 2346788999999998887777
Q ss_pred CCEEEEEECCCCeEE
Q 000450 698 VDVLFIWDVKTGARE 712 (1496)
Q Consensus 698 dg~V~VWDl~tg~~~ 712 (1496)
+.+++..+..+..+
T Consensus 150 -~~l~~~~vd~~t~~ 163 (316)
T COG3204 150 -RALYLFTVDADTTV 163 (316)
T ss_pred -ceEEEEEEcCCccE
Confidence 89999888766443
Done!