Query 000450
Match_columns 1496
No_of_seqs 463 out of 4493
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 16:08:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000450.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_230-233//hhsearch_pdb/000450hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 1.0 1 1 373.0 64.0 556 14-764 14-577 (577)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 369.9 48.5 523 14-714 613-1164(1249)
3 1nr0_A Actin interacting prote 1.0 1 1 337.9 56.9 575 5-765 5-609 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 333.7 44.9 201 478-728 1018-1227(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 331.7 59.8 507 53-765 6-537 (577)
6 1nr0_A Actin interacting prote 1.0 1 1 326.2 57.6 533 7-707 41-610 (611)
7 1pgu_A Actin interacting prote 1.0 1 1 312.1 58.6 551 6-766 6-613 (615)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 305.5 60.1 540 14-719 15-675 (902)
9 1pgu_A Actin interacting prote 1.0 1 1 300.8 53.6 499 15-709 62-615 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 276.8 57.7 602 15-772 57-788 (902)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=373.05 Aligned_cols=556 Identities=16% Similarity=0.170 Sum_probs=358.2
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99950899999389997999807885999986678997202248840644344675530333203686322222235666
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~p~h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
.++..|+|++|||||++||||+.||+|++||.. .+....+.||+++|++++
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~------~~~~~~l~gh~~~V~~l~----------------------- 64 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------GQLLQTLTGHSSSVWGVA----------------------- 64 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT------SCEEEEEECCSSCEEEEE-----------------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECC------CCEEEEEECCCCCEEEEE-----------------------
T ss_conf 899857999998998999999389989999799------978999968989989999-----------------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEECCC--CCCCCCCCCC--CCC-
Q ss_conf 44554699998999837981999988998178853199987889479974899959999030--0235876665--312-
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCC--FIDTNQLSDH--HSF- 168 (1496)
Q Consensus 94 ~~~~~s~d~~~LvSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~~~~~~ll~~g~~--~id~~~l~~~--~~~- 168 (1496)
+++|+++|+|++.|++|+|||+ +|+++...+.+ ..+.....+.+++.+++++.. .+..+..... ..+
T Consensus 65 ----fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~ 136 (577)
T 2ymu_A 65 ----FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136 (577)
T ss_dssp ----ECTTSSEEEEEETTSCEEEEET-TSCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEEC
T ss_pred ----ECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECC---CCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECC
T ss_conf ----9899999999969897999989-99789999789---998899999899998999807983352023552001104
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf ---22246643445678889999627999978750799998517643587279999530578871159999188829999
Q 000450 169 ---ESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLV 245 (1496)
Q Consensus 169 ---~si~~~~~~~d~~~~~~~~~~~~i~i~d~~t~~il~~l~s~~~s~~~i~~~~v~~~~~d~~~~~~lias~dG~i~vW 245 (1496)
..+.......+............+.+++...... ..... ..+.+..+.+. ++++ .++.++.||.+++|
T Consensus 137 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~v~~~~~~---~~~~--~l~~~~~d~~v~~w 207 (577)
T 2ymu_A 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTG---HSSSVWGVAFS---PDGQ--TIASASDDKTVKLW 207 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE-EEEEC---CSSCEEEEEEC---TTSS--CEEEEETTSEEEEE
T ss_pred CCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEEEE-EECCC---CCCCEEEEEEC---CCCC--EEEEECCCCEEEEE
T ss_conf 7777435554203776320025553100000000000-00268---77635665416---9977--89998599989999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCCCCEEEEECCEEEEE
Q ss_conf 97889865322478754578841001002675457319999029969999919837999758886421155420304851
Q 000450 246 PISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLE 325 (1496)
Q Consensus 246 ~l~~~~~~~~~~~~~l~~~ek~i~~~~~~~~~~~~~~~vs~s~~g~~i~~v~~~~~~~~l~d~~~~ige~~~~~~~lc~~ 325 (1496)
+.... .+ .....+...+..+++++++..+++++.++. +++|+.... . +...
T Consensus 208 ~~~~~----------------~~---~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~-i~~w~~~~~---~------~~~~ 258 (577)
T 2ymu_A 208 NRNGQ----------------LL---QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRNGQ---L------LQTL 258 (577)
T ss_dssp CTTSC----------------EE---EEEECCSSCEEEEEECTTSSCEEEEETTSC-EEEECTTSC---E------EEEE
T ss_pred ECCCC----------------EE---EEEECCCCCEEEEEECCCCCEEEEEECCCE-EEEEECCCC---E------EEEE
T ss_conf 49996----------------89---999468898899999799999999918998-999959997---9------9998
Q ss_pred CCCCCCEEEEEEEEECHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEE
Q ss_conf 78888505544872000222101345523555412999928996999997247887765570430676789885023778
Q 000450 326 GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHF 405 (1496)
Q Consensus 326 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~vw~~~G~~~iy~i~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f 405 (1496)
... ...+.+.....+ ...++..+.++.+++|+... .. .. ...........+.|
T Consensus 259 ~~~--~~~v~~v~~~~d---------------~~~l~~~~~d~~i~~w~~~~--~~-----~~---~~~~h~~~v~~~~~ 311 (577)
T 2ymu_A 259 TGH--SSSVNGVAFRPD---------------GQTIASASDDKTVKLWNRNG--QL-----LQ---TLTGHSSSVWGVAF 311 (577)
T ss_dssp CCC--SSCEEEEEECTT---------------SSEEEEEETTSCEEEEETTS--CE-----EE---EECCCSSCEEEEEE
T ss_pred ECC--CCCEEEEEECCC---------------CCEEEEEECCCEEEEEECCC--CE-----EE---EEECCCCCEEEEEE
T ss_conf 068--898799999689---------------99999995999799994899--58-----99---97068897699999
Q ss_pred EECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 41220466632121034555544571799982345789985303851587056621366545688894012021133568
Q 000450 406 IQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQD 485 (1496)
Q Consensus 406 ~~~~~~L~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dg~~~~~l~~s~~~s 485 (1496)
.+++.++++.. . +..+++|.+... ....+ .+....++.+.. .++|. .+.....++
T Consensus 312 ~~~~~~l~t~~-----~------d~~i~~w~~~~~------~~~~~-~~~~~~v~~~~~----s~~g~---~l~~~~~dg 366 (577)
T 2ymu_A 312 SPDGQTIASAS-----D------DKTVKLWNRNGQ------HLQTL-TGHSSSVWGVAF----SPDGQ---TIASASDDK 366 (577)
T ss_dssp CTTSSEEEEEE-----T------TSCEEEEETTSC------EEEEE-CCCSSCEEEEEE----CTTSS---EEEEEETTS
T ss_pred CCCCCEEEEEE-----C------CCEEEEEECCCC------EEEEE-ECCCCCEEEEEE----CCCCC---EEEEEECCC
T ss_conf 99999999996-----9------995999969997------25787-478897799999----89999---999996999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 61233456788789862013337853899996205653598999999699299998045434799988433577626799
Q 000450 486 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY 565 (1496)
Q Consensus 486 ~v~~Wd~~~~~~~~~l~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~ 565 (1496)
.+++|+.. +++...+.+|...|+++.+.++.. .+++|+.||.+++ |+ . +++....
T Consensus 367 ~v~~~~~~-----~~~~~~~~~~~~~v~~~~~s~dg~----~l~~~~~d~~v~~--~~-------------~-~~~~~~~ 421 (577)
T 2ymu_A 367 TVKLWNRN-----GQLLQTLTGHSSSVRGVAFSPDGQ----TIASASDDKTVKL--WN-------------R-NGQLLQT 421 (577)
T ss_dssp EEEEEETT-----CCEEEEEECCSSCEEEEEECTTSS----CEEEEETTSEEEE--EC-------------T-TCCEEEE
T ss_pred EEEEECCC-----CCEEEEECCCCCCEEEEEECCCCC----EEEEEECCCEEEE--EE-------------C-CCCEEEE
T ss_conf 89999089-----978998527889748999989999----9999949998999--96-------------9-9978989
Q ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 83488668999992178776567689799999699949999799995699980269878999989999999999999999
Q 000450 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 566 l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sg 645 (1496)
+.+|...|++++|+|+ ++++++++.|++|++||. +++.+..+..|..+|+++.|+|+ +++++++
T Consensus 422 ~~~~~~~v~~~~~s~d---------~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd------~~~las~ 485 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPD---------DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------GQTIASA 485 (577)
T ss_dssp EECCSSCEEEEEECTT---------SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT------SCEEEEE
T ss_pred ECCCCCCEEEEEECCC---------CCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCC------CCEEEEE
T ss_conf 6288997579999899---------999999939998999979-99889997278997789999699------9999999
Q ss_pred ECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf 68980999988999288994279998289999499999999974899988999889999899990899981778871112
Q 000450 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1496)
Q Consensus 646 s~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh~a~~i~~ 725 (1496)
+.|++|++||. ++++++.+.+|...|++++|+|++++|++++.| +.|++||. +++++..+.||...+...
T Consensus 486 ~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d--------g~v~lwd~-~~~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 486 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD--------KTVKLWNR-NGQLLQTLTGHSSSVWGV 555 (577)
T ss_dssp ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT--------SEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred ECCCEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECC--------CEEEEEEC-CCCEEEEECCCCCCEEEE
T ss_conf 19897999939-997899986799998999991899999999896--------99999969-997898971888887899
Q ss_pred EEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEEC
Q ss_conf 232164111343427707843433521101499578612
Q 000450 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 726 ~~~~~~~~~~~sg~i~~g~~~~s~~l~~i~~D~~ir~W~ 764 (1496)
.|.+. |... +....|++++.|+
T Consensus 556 ~fs~d------------g~~l-----~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 556 AFSPD------------GQTI-----ASASSDKTVKLWN 577 (577)
T ss_dssp EECTT------------SSCE-----EEEETTSCEEEEC
T ss_pred EECCC------------CCEE-----EEEECCCEEEEEC
T ss_conf 99689------------9999-----9990899999969
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=369.93 Aligned_cols=523 Identities=13% Similarity=0.087 Sum_probs=282.0
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99950899999389997999807885999986678997202248840644344675530333203686322222235666
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~p~h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
++...|++++|+||+++|++|+.||.|++||+.+ ......+.+|..+|++++
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-----~~~~~~~~~h~~~v~~~~----------------------- 664 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-----GEKLLDIKAHEDEVLCCA----------------------- 664 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----CCEEEEECCCSSCEEEEE-----------------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-----CCEEEEECCCCCCEEEEE-----------------------
T ss_conf 6666489999879999899994889499999899-----978887606777789999-----------------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCC--CCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 4455469999899983798199998899817885319998788947997489--99599990300235876665312222
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS--NPRYVCIGCCFIDTNQLSDHHSFESV 171 (1496)
Q Consensus 94 ~~~~~s~d~~~LvSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~~~--~~~ll~~g~~~id~~~l~~~~~~~si 171 (1496)
+++++.+|++++.||.|++||+.+|+++.....+ ..+.....+.+ +..++++|..
T Consensus 665 ----~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~sg~~---------------- 721 (1249)
T 3sfz_A 665 ----FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH---SEQVNCCHFTNKSNHLLLATGSN---------------- 721 (1249)
T ss_dssp ----ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSCCEEEEEET----------------
T ss_pred ----EECCCCEEEEEECCCEEEEEECCCCCEEEEECCC---CCCEEEEEEECCCCCEEEEEEEC----------------
T ss_conf ----9269998999818995999877999368999589---97379999840899659999808----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCC
Q ss_conf 46643445678889999627999978750799998517643587279999530578871159999188829999978898
Q 000450 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKES 251 (1496)
Q Consensus 172 ~~~~~~~d~~~~~~~~~~~~i~i~d~~t~~il~~l~s~~~s~~~i~~~~v~~~~~d~~~~~~lias~dG~i~vW~l~~~~ 251 (1496)
++.+.+||..+.+.+.++.. + .+++.+++|++ +++ .+++++.||.|++|++....
T Consensus 722 -----------------d~~v~vwd~~~~~~~~~~~~-h--~~~v~~~~~sp---~~~--~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 722 -----------------DFFLKLWDLNQKECRNTMFG-H--TNSVNHCRFSP---DDE--LLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp -----------------TSCEEEEETTSSSEEEEECC-C--SSCEEEEEECS---STT--EEEEEESSSEEEEEEGGGTE
T ss_pred -----------------CCEEEEEECCCCCHHHEECC-C--CCCEEEEEEEC---CCC--EEEEEECCCEEEEEECCCCC
T ss_conf -----------------97099998999634220127-7--79788999925---999--89999789859999688886
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCCCCEEEEECCEEEEECCCCCC
Q ss_conf 65322478754578841001002675457319999029969999919837999758886421155420304851788885
Q 000450 252 HLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNS 331 (1496)
Q Consensus 252 ~~~~~~~~~l~~~ek~i~~~~~~~~~~~~~~~vs~s~~g~~i~~v~~~~~~~~l~d~~~~ige~~~~~~~lc~~~~~~~~ 331 (1496)
.............. . .........+.+++++++|..++....+...+|....+..+.++ .... .
T Consensus 777 ~~~~~~~~~~~~~~--~---~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~---------~~~~--~ 840 (1249)
T 3sfz_A 777 ERKSINVKRFFLSS--E---DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI---------HTGH--H 840 (1249)
T ss_dssp EEEEEECCCCC-------------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE---------ECSS--S
T ss_pred CCCEECCCCCCCCC--C---CCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEE---------CCCC--C
T ss_conf 55302023210246--7---76445650179999978998899975895999995689723577---------4787--7
Q ss_pred EEEEEEEEECHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEE
Q ss_conf 05544872000222101345523555412999928996999997247887765570430676789885023778412204
Q 000450 332 YVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLY 411 (1496)
Q Consensus 332 ~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~vw~~~G~~~iy~i~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~ 411 (1496)
..+.......+ ...+++++.+|.+.+|++.... ... ...........+.|.+++.+
T Consensus 841 ~~v~~~~~sp~---------------~~~l~~~~~dg~v~vwd~~~~~------~~~---~~~~h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 841 STIQYCDFSPY---------------DHLAVIALSQYCVELWNIDSRL------KVA---DCRGHLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp SCCCEEEECSS---------------TTEEEEECSSSCEEEEETTTTE------EEE---EECCCSSCEEEEEECTTSSE
T ss_pred CCEEEEEECCC---------------CCEEEEEECCCEEEEEECCCCC------EEE---ECCCCCCCEEEEEECCCCCE
T ss_conf 76079998278---------------8889999479869999867895------653---22787665689999899998
Q ss_pred EEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCC----EEEECCCCC-----------EEEECC---------CC-C-
Q ss_conf 666321210345555445717999823457899853----038515870-----------566213---------66-5-
Q 000450 412 LLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQ----CRMVGEGFS-----------FVDWVN---------NS-T- 465 (1496)
Q Consensus 412 L~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~----~k~l~~G~~-----------~~~w~~---------~~-~- 465 (1496)
+++.. .+ ..+++|.+.......... ......... ...+.. .. +
T Consensus 897 l~s~s-----~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 897 FLTAS-----DD------QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEEEE-----TT------SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEEEE-----CC------CEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEE
T ss_conf 99995-----89------72898874665201021133103689759986899813776248984476508972567278
Q ss_pred -CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf -4568889401202113356861233456788789862013337853899996205653598999999699299998045
Q 000450 466 -FLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL 544 (1496)
Q Consensus 466 -~~~~~dg~~~~~l~~s~~~s~v~~Wd~~~~~~~~~l~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~ 544 (1496)
....++|. .+.....++.+.+|+.... .....+.+|...|+++.+.++.. .+++|+.||.+.+|.+.
T Consensus 966 ~~~~sp~g~---~l~~g~~~g~i~i~d~~~~----~~~~~~~~h~~~v~~l~~s~dg~----~l~s~~~dg~i~vwd~~- 1033 (1249)
T 3sfz_A 966 CCCLSPHLE---YVAFGDEDGAIKIIELPNN----RVFSSGVGHKKAVRHIQFTADGK----TLISSSEDSVIQVWNWQ- 1033 (1249)
T ss_dssp EEEECTTSS---EEEEEETTSCCEEEETTTT----SCEEECCCCSSCCCCEEECSSSS----CEEEECSSSBEEEEETT-
T ss_pred EEEECCCCC---EEEEECCCCCEEEEECCCC----CEEEECCCCCCCEEEEEECCCCC----EEEEECCCCEEEEEECC-
T ss_conf 999958997---7999869998899975787----23443036777168999989999----89998699879999879-
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCE
Q ss_conf 43479998843357762679983488668999992178776567689799999699949999799995699980269878
Q 000450 545 FERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624 (1496)
Q Consensus 545 l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V 624 (1496)
++... .+.+|...|.++.++++ ..+++++.|++|++||+.+++....+..|.+.|
T Consensus 1034 --------------~~~~~-~~~~~~~~v~~~~~~~~----------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v 1088 (1249)
T 3sfz_A 1034 --------------TGDYV-FLQAHQETVKDFRLLQD----------SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1088 (1249)
T ss_dssp --------------TTEEE-CCBCCSSCEEEEEECSS----------SEEEEEESSSEEEEEETTTTCCCEEEECCSSCC
T ss_pred --------------CCCEE-EEECCCCCEEEEEECCC----------CCEEEEECCCCEEEEECCCCCEEEEECCCCCCE
T ss_conf --------------99668-98527873899999089----------958999788968998889886558874668848
Q ss_pred EEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 99998999999999999999968980999988999288994279998289999499999999974899988999889999
Q 000450 625 RQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 625 ~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VW 704 (1496)
.++.|+|+ +..+++++.|++|++||+.+++++..+.+|...|++++|+|++.+|++++.| |.|++|
T Consensus 1089 ~~~~~s~d------~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d--------g~i~vw 1154 (1249)
T 3sfz_A 1089 LSCAISSD------ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN--------GEIRIW 1154 (1249)
T ss_dssp CCEEECSS------SSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT--------SCCCEE
T ss_pred EEEEECCC------CCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--------CEEEEE
T ss_conf 99999899------9989998499948998789850012550687767999997999989998289--------979999
Q ss_pred ECCCCEEEEE
Q ss_conf 8999908999
Q 000450 705 DVKTGARERV 714 (1496)
Q Consensus 705 Di~tg~~~~~ 714 (1496)
|+.+++....
T Consensus 1155 d~~~~~~~~~ 1164 (1249)
T 3sfz_A 1155 NVSDGQLLHS 1164 (1249)
T ss_dssp ESSSSCCCCC
T ss_pred ECCCCCEEEE
T ss_conf 8899945788
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=337.86 Aligned_cols=575 Identities=10% Similarity=0.059 Sum_probs=327.6
Q ss_pred EEEEECCCCCCC--CEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 246741899999--508999993899979998078859999866789972022488406443446755303332036863
Q 000450 5 SVACIWSGTPPS--HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGK 82 (1496)
Q Consensus 5 ~~~~lw~~~~p~--h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~ 82 (1496)
+...+|.+.|.. ..+.+++|+|||+.|++++ ++.|++|++.. ......+.||+.+|++++
T Consensus 5 ~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~-----~~~~~~~~~h~~~v~~~~------------ 66 (611)
T 1nr0_A 5 SQTALFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS-----LTDTEIYTEHSHQTTVAK------------ 66 (611)
T ss_dssp EEEEEECCCCCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC-----SSCCEEECCCSSCEEEEE------------
T ss_pred CCCCEECCCCCCCCCCEEEEEECCCCCEEEECC-CCEEEEECCCC-----CCCCEEECCCCCCEEEEE------------
T ss_conf 116279899974068236976679999799679-99799945787-----242737658998659999------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEE--EEECCCCCCCCCCEEEECCCCCEEEE-ECCCC---
Q ss_conf 2222223566644554699998999837981999988998178--85319998788947997489995999-90300---
Q 000450 83 AEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCR--RRRKLPPWVGSPSVICTLPSNPRYVC-IGCCF--- 156 (1496)
Q Consensus 83 ~~~~~~~~~~~~~~~~s~d~~~LvSas~DG~I~VWdv~~G~ci--~~~~l~~~~g~~~~i~~~~~~~~ll~-~g~~~--- 156 (1496)
+++|+.+|+|++.||+++|||+.++.+. .....+ ..+.....|.+++.+++ ++...
T Consensus 67 ---------------~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~---~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 67 ---------------TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF---SGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp ---------------ECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS---SSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred ---------------ECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCC---CCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf ---------------999996899994899789948989841566762255---78448999899999799998997736
Q ss_pred --CCCCCCCCCCCCCCCCCCCCC-------CCCCC-CCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEECCC
Q ss_conf --235876665312222466434-------45678-88999962799997875079999851764358727999953057
Q 000450 157 --IDTNQLSDHHSFESVEGDLVS-------EDKEV-PMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGE 226 (1496)
Q Consensus 157 --id~~~l~~~~~~~si~~~~~~-------~d~~~-~~~~~~~~~i~i~d~~t~~il~~l~s~~~s~~~i~~~~v~~~~~ 226 (1496)
+..+. .......+.++... -+... ......++.+.+||..+.+.+.++.. + .++|.+++|+ |
T Consensus 129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H--~~~V~~v~fs---p 200 (611)
T 1nr0_A 129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-H--TKFVHSVRYN---P 200 (611)
T ss_dssp EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-C--SSCEEEEEEC---T
T ss_pred EEEEEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECC-C--CCCEEEEEEC---C
T ss_conf 6999963--89976325478898369998899982999992898099997999757665200-2--5716999997---9
Q ss_pred CCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCEEEEEEC
Q ss_conf 88711599991888299999788986532247875457884100100267545731999902996999991983799975
Q 000450 227 DMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLL 306 (1496)
Q Consensus 227 d~~~~~~lias~dG~i~vW~l~~~~~~~~~~~~~l~~~ek~i~~~~~~~~~~~~~~~vs~s~~g~~i~~v~~~~~~~~l~ 306 (1496)
+++ .++.++.||.|++|++....... .+.... + ...+|.+.+..++|+|+|..+++++.+.. +++|
T Consensus 201 dg~--~las~s~D~~i~lwd~~~g~~~~-----~~~~~~--~----~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lW 266 (611)
T 1nr0_A 201 DGS--LFASTGGDGTIVLYNGVDGTKTG-----VFEDDS--L----KNVAHSGSVFGLTWSPDGTKIASASADKT-IKIW 266 (611)
T ss_dssp TSS--EEEEEETTSCEEEEETTTCCEEE-----ECBCTT--S----SSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEE
T ss_pred CCC--EEEEEECCCCEEEEECCCCCEEE-----EECCCC--C----CCCCCCCCEEEEEECCCCCEEEEEECCCE-EEEE
T ss_conf 999--89999899919998899982866-----513664--3----23566787899999799999999908980-9999
Q ss_pred CCCC--CCCEEEEECCEEEEECCCCCCEEEEEEEEECHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf 8886--42115542030485178888505544872000222101345523555412999928996999997247887765
Q 000450 307 GSGS--TIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDY 384 (1496)
Q Consensus 307 d~~~--~ige~~~~~~~lc~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~vw~~~G~~~iy~i~~~~~~~~~ 384 (1496)
+... .+..+ .. ............+ + ...++..+.+|.+.+|+.....
T Consensus 267 d~~~~~~~~~~-------~~-~~~~~~~~~~~~~---~---------------~~~l~s~s~d~~i~~~~~~~~~----- 315 (611)
T 1nr0_A 267 NVATLKVEKTI-------PV-GTRIEDQQLGIIW---T---------------KQALVSISANGFINFVNPELGS----- 315 (611)
T ss_dssp ETTTTEEEEEE-------EC-CSSGGGCEEEEEE---C---------------SSCEEEEETTCCEEEEETTTTE-----
T ss_pred ECCCCCEEEEE-------CC-CCCCCCEEEEEEE---C---------------CCEEEEEECCCCEEEEECCCCC-----
T ss_conf 68887013440-------47-8876640689997---3---------------8879999589968999688997-----
Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCC
Q ss_conf 57043067678988502377841220466632121034555544571799982345789985303851587056621366
Q 000450 385 EPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNS 464 (1496)
Q Consensus 385 ~~~~~ip~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~ 464 (1496)
... ...........+.|.+++.++++.. .+ ..+++|.+.... ....+..+....+..+..
T Consensus 316 --~~~--~~~gh~~~v~~l~~spdg~~l~s~s-----~D------~~v~~Wd~~~~~-----~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 316 --IDQ--VRYGHNKAITALSSSADGKTLFSAD-----AE------GHINSWDISTGI-----SNRVFPDVHATMITGIKT 375 (611)
T ss_dssp --EEE--EECCCSSCEEEEEECTTSSEEEEEE-----TT------SCEEEEETTTCC-----EEECSSCSCSSCEEEEEE
T ss_pred --CCE--EECCCCCCEEEEEEECCCCEEEEEE-----CC------CCEEEEECCCCC-----EEEECCCCCCCEEEEEEE
T ss_conf --446--9837888889999918999899995-----89------849999788792-----563216677650789998
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC--EEEEEECCCCEEEEEE
Q ss_conf 54568889401202113356861233456788789862013337853899996205653598--9999996992999980
Q 000450 465 TFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQF 542 (1496)
Q Consensus 465 ~~~~~~dg~~~~~l~~s~~~s~v~~Wd~~~~~~~~~l~~~~~~h~~~Vts~~~is~~~f~P~--~lv~Gs~dG~I~I~~~ 542 (1496)
.+++ .+.....++.+++|+............ .........+.. |+|+ .++.+ .++.+.+|
T Consensus 376 ----s~~~----~l~s~s~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~~------~s~dg~~~~~~-~~~~v~~~-- 437 (611)
T 1nr0_A 376 ----TSKG----DLFTVSWDDHLKVVPAGGSGVDSSKAV-ANKLSSQPLGLA------VSADGDIAVAA-CYKHIAIY-- 437 (611)
T ss_dssp ----CTTS----CEEEEETTTEEEEECSSSSSSCTTSCC-EEECSSCEEEEE------ECTTSSCEEEE-ESSEEEEE--
T ss_pred ----CCCC----CEEEEECCCCEEEEECCCCCCCCCCEE-EEECCCCCCEEE------EECCCCEEEEE-ECCEEEEE--
T ss_conf ----7899----699998489668954688543565212-001489970799------80799699999-67639998--
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE--EEEECCC
Q ss_conf 45434799988433577626799834886689999921787765676897999996999499997999956--9998026
Q 000450 543 DLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--ITVMHHH 620 (1496)
Q Consensus 543 d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~--l~~l~~H 620 (1496)
+ .+. ...+. |...+.+++|+|+ ++++++|+.|++|++||+..+.. ... ..|
T Consensus 438 ~---------------~~~-~~~~~-~~~~v~~va~spd---------g~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h 490 (611)
T 1nr0_A 438 S---------------HGK-LTEVP-ISYNSSCVALSND---------KQFVAVGGQDSKVHVYKLSGASVSEVKT-IVH 490 (611)
T ss_dssp E---------------TTE-EEEEE-CSSCEEEEEECTT---------SCEEEEEETTSEEEEEEEETTEEEEEEE-EEC
T ss_pred E---------------CCC-EEEEE-CCCCCEEEEEECC---------CCEEEEECCCCEEEEEECCCCCEEEEEC-CCC
T ss_conf 4---------------894-34640-6889549999289---------9899996899739999945992224101-577
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCC-CCEEEE--ECCCCCCCEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 98789999899999999999999996898099998899-928899--427999828999949999999997489998899
Q 000450 621 VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERM--FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 621 ~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~-~~~l~~--~~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~ 697 (1496)
...|+++.|+|+ ++++++++.|++|++|++.+ ++++.. +.+|...|++++|+|++++|++++.|
T Consensus 491 ~~~v~~v~fspd------g~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D------- 557 (611)
T 1nr0_A 491 PAEITSVAFSNN------GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------- 557 (611)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred CCCEEEEEECCC------CCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECC-------
T ss_conf 886079999899------9989999489989998857787223210264046642589989989979999799-------
Q ss_pred CCEEEEEECCCCE-EE-EEEECC-CCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEECC
Q ss_conf 9889999899990-89-998177-88711122321641113434277078434335211014995786126
Q 000450 698 VDVLFIWDVKTGA-RE-RVLRGT-ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 698 dg~I~VWDi~tg~-~~-~~l~gh-~a~~i~~~~~~~~~~~~~sg~i~~g~~~~s~~l~~i~~D~~ir~W~l 765 (1496)
++|++||+.++. .. ..+.+| ...+..+.|.++ +. ++....|+++|.|++
T Consensus 558 -~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d------------~~------l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 558 -NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE------------TT------IVSAGQDSNIKFWNV 609 (611)
T ss_dssp -SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET------------TE------EEEEETTSCEEEEEC
T ss_pred -CCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCC------------CE------EEEECCCCCEEEEEC
T ss_conf -72999978875556326444676567118998589------------97------999528877899844
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=333.73 Aligned_cols=201 Identities=14% Similarity=0.143 Sum_probs=119.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 21133568612334567887898620133378538999962056535989999996992999980454347999884335
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~s~v~~Wd~~~~~~~~~l~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~ 557 (1496)
+.+...++.+++|+...... .....|...+.+..+.++. .+++++.||.+.+ |+ .
T Consensus 1018 l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~v~~~~~~~~~-----~l~~~~~dg~v~v--wd-------------~ 1072 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGDY-----VFLQAHQETVKDFRLLQDS-----RLLSWSFDGTVKV--WN-------------V 1072 (1249)
T ss_dssp EEEECSSSBEEEEETTTTEE-----ECCBCCSSCEEEEEECSSS-----EEEEEESSSEEEE--EE-------------T
T ss_pred EEEECCCCEEEEEECCCCCE-----EEEECCCCCEEEEEECCCC-----CEEEEECCCCEEE--EE-------------C
T ss_conf 99986998799998799966-----8985278738999990899-----5899978896899--88-------------8
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCC
Q ss_conf 77626799834886689999921787765676897999996999499997999956999802698789999899999999
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~ 637 (1496)
.++.....+.+|.+.|++++|+|+ +.++++++.|++|++||+.+++++..+.+|.++|+++.|+|+
T Consensus 1073 ~~~~~~~~~~~~~~~v~~~~~s~d---------~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d----- 1138 (1249)
T 3sfz_A 1073 ITGRIERDFTCHQGTVLSCAISSD---------ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD----- 1138 (1249)
T ss_dssp TTTCCCEEEECCSSCCCCEEECSS---------SSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSS-----
T ss_pred CCCCEEEEECCCCCCEEEEEECCC---------CCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCC-----
T ss_conf 988655887466884899999899---------998999849994899878985001255068776799999799-----
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEE---------CCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf 9999999968980999988999288994---------2799982899994999999999748999889998899998999
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMF---------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 638 ~~~~l~Sgs~DgsV~lwdl~~~~~l~~~---------~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~t 708 (1496)
++++++++.|+.|++||+.+++++..+ .+|...|++++|+|++.+++++ + |.|++||+.+
T Consensus 1139 -g~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~--~--------g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1139 -GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA--G--------GYLKWWNVAT 1207 (1249)
T ss_dssp -SSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE--S--------SSEEEBCSSS
T ss_pred -CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEC--C--------CEEEEEECCC
T ss_conf -9989998289979999889994578851444442102567428999997899989977--9--------8599989888
Q ss_pred CEEEEEEECCCCCCEEEEEE
Q ss_conf 90899981778871112232
Q 000450 709 GARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 709 g~~~~~l~gh~a~~i~~~~~ 728 (1496)
++....+.+|...+....|.
T Consensus 1208 g~~~~~~~~~~~~i~~~~~s 1227 (1249)
T 3sfz_A 1208 GDSSQTFYTNGTNLKKIHVS 1227 (1249)
T ss_dssp CBCCCCCCCSSCCCCCCEEC
T ss_pred CCEEEEEECCCCCCCEEEEC
T ss_conf 95004640047753279997
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=331.72 Aligned_cols=507 Identities=15% Similarity=0.145 Sum_probs=294.0
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCC
Q ss_conf 02248840644344675530333203686322222235666445546999989998379819999889981788531999
Q 000450 53 IKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPP 132 (1496)
Q Consensus 53 ~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s~d~~~LvSas~DG~I~VWdv~~G~ci~~~~l~~ 132 (1496)
++.++.|.||+.+|+|++ +++|+.+|+|++.|++|+|||. +|++++..+.+
T Consensus 6 ~~e~~~L~GH~~~V~~~a---------------------------~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh- 56 (577)
T 2ymu_A 6 VKERNRLEAHSSSVRGVA---------------------------FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH- 56 (577)
T ss_dssp CCEEEEECCCSSCEEEEE---------------------------ECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-
T ss_pred CEEEEEECCCCCCEEEEE---------------------------ECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECC-
T ss_conf 389439878998579999---------------------------9899899999938998999979-99789999689-
Q ss_pred CCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCC
Q ss_conf 87889479974899959999030023587666531222246643445678889999627999978750799998517643
Q 000450 133 WVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLS 212 (1496)
Q Consensus 133 ~~g~~~~i~~~~~~~~ll~~g~~~id~~~l~~~~~~~si~~~~~~~d~~~~~~~~~~~~i~i~d~~t~~il~~l~s~~~s 212 (1496)
........|++++++++++.. ++.|.+||. +.+.+.++.. +
T Consensus 57 --~~~V~~l~fspdg~~las~~~---------------------------------d~~i~vWd~-~~~~~~~~~~-~-- 97 (577)
T 2ymu_A 57 --SSSVWGVAFSPDGQTIASASD---------------------------------DKTVKLWNR-NGQLLQTLTG-H-- 97 (577)
T ss_dssp --SSCEEEEEECTTSSEEEEEET---------------------------------TSCEEEEET-TSCEEEEECC-C--
T ss_pred --CCCEEEEEECCCCCEEEEEEC---------------------------------CCEEEEEEC-CCCEEEEEEC-C--
T ss_conf --899899999899999999969---------------------------------897999989-9978999978-9--
Q ss_pred CCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCC-CCCC-----------------------CCCCCCCC
Q ss_conf 58727999953057887115999918882999997889865322-4787-----------------------54578841
Q 000450 213 IGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDRE-EGNG-----------------------LCKSSSQL 268 (1496)
Q Consensus 213 ~~~i~~~~v~~~~~d~~~~~~lias~dG~i~vW~l~~~~~~~~~-~~~~-----------------------l~~~ek~i 268 (1496)
.+++.+++|+ ++++ .++.++.|+.+++|+.......... .... ++....
T Consensus 98 ~~~v~~~~~s---~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 170 (577)
T 2ymu_A 98 SSSVRGVAFS---PDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-- 170 (577)
T ss_dssp SSCEEEEEEC---TTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--
T ss_pred CCCEEEEEEC---CCCC--EEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCE--
T ss_conf 9988999998---9999--89998079833520235520011047777435554203776320025553100000000--
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCC-CCCEEEEECCEEEEECCCCCCEEEEEEEEECHHHHHH
Q ss_conf 001002675457319999029969999919837999758886-4211554203048517888850554487200022210
Q 000450 269 DMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS-TIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKI 347 (1496)
Q Consensus 269 ~~~~~~~~~~~~~~~vs~s~~g~~i~~v~~~~~~~~l~d~~~-~ige~~~~~~~lc~~~~~~~~~~v~g~~~~~~~~~~~ 347 (1496)
........+...+..+.+++++..+++.+.++. +++|+... .+..+ ..+. ..+.+.....+
T Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~~w~~~~~~~~~~---------~~~~---~~v~~~~~s~d----- 232 (577)
T 2ymu_A 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWNRNGQLLQTL---------TGHS---SSVRGVAFSPD----- 232 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECTTSCEEEEE---------ECCS---SCEEEEEECTT-----
T ss_pred EEEEECCCCCCCEEEEEECCCCCEEEEECCCCE-EEEEECCCCEEEEE---------ECCC---CCEEEEEECCC-----
T ss_conf 000002687763566541699778999859998-99994999689999---------4688---98899999799-----
Q ss_pred CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCC
Q ss_conf 13455235554129999289969999972478877655704306767898850237784122046663212103455554
Q 000450 348 ENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQ 427 (1496)
Q Consensus 348 ~~~~~~~~~~~~~v~vw~~~G~~~iy~i~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~ 427 (1496)
...++..+.+|.+.+|+.. +. .+. ...........+.|.+++..++... .
T Consensus 233 ----------g~~l~~~~~d~~i~~w~~~--~~-----~~~---~~~~~~~~v~~v~~~~d~~~l~~~~-----~----- 282 (577)
T 2ymu_A 233 ----------GQTIASASDDKTVKLWNRN--GQ-----LLQ---TLTGHSSSVNGVAFRPDGQTIASAS-----D----- 282 (577)
T ss_dssp ----------SSCEEEEETTSCEEEECTT--SC-----EEE---EECCCSSCEEEEEECTTSSEEEEEE-----T-----
T ss_pred ----------CCEEEEEECCCEEEEEECC--CC-----EEE---EEECCCCCEEEEEECCCCCEEEEEE-----C-----
T ss_conf ----------9999999189989999599--97-----999---9806889879999968999999995-----9-----
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45717999823457899853038515870566213665456888940120211335686123345678878986201333
Q 000450 428 WRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVH 507 (1496)
Q Consensus 428 ~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dg~~~~~l~~s~~~s~v~~Wd~~~~~~~~~l~~~~~~ 507 (1496)
+..+++|.... ...+. ..+....++.+.. .+++. .+.+...++.+++|+... .....+.+
T Consensus 283 -d~~i~~w~~~~------~~~~~-~~~h~~~v~~~~~----~~~~~---~l~t~~~d~~i~~w~~~~-----~~~~~~~~ 342 (577)
T 2ymu_A 283 -DKTVKLWNRNG------QLLQT-LTGHSSSVWGVAF----SPDGQ---TIASASDDKTVKLWNRNG-----QHLQTLTG 342 (577)
T ss_dssp -TSCEEEEETTS------CEEEE-ECCCSSCEEEEEE----CTTSS---EEEEEETTSCEEEEETTS-----CEEEEECC
T ss_pred -CCEEEEEECCC------CEEEE-EECCCCCEEEEEE----CCCCC---EEEEEECCCEEEEEECCC-----CEEEEEEC
T ss_conf -99799994899------58999-7068897699999----99999---999996999599996999-----72578747
Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf 78538999962056535989999996992999980454347999884335776267998348866899999217877656
Q 000450 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1496)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~ 587 (1496)
|...++++.+.++.. .+++|+.||.+++|.. ++.....+.+|...|++++|+|+
T Consensus 343 ~~~~v~~~~~s~~g~----~l~~~~~dg~v~~~~~----------------~~~~~~~~~~~~~~v~~~~~s~d------ 396 (577)
T 2ymu_A 343 HSSSVWGVAFSPDGQ----TIASASDDKTVKLWNR----------------NGQLLQTLTGHSSSVRGVAFSPD------ 396 (577)
T ss_dssp CSSCEEEEEECTTSS----EEEEEETTSEEEEEET----------------TCCEEEEEECCSSCEEEEEECTT------
T ss_pred CCCCEEEEEECCCCC----EEEEEECCCEEEEECC----------------CCCEEEEECCCCCCEEEEEECCC------
T ss_conf 889779999989999----9999969998999908----------------99789985278897489999899------
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 76897999996999499997999956999802698789999899999999999999996898099998899928899427
Q 000450 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 588 ~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~g 667 (1496)
++++++++.|+.|++||. +++.+..+..|...|+++.|+|+ ++.+++++.|++|++||. +++++..+.+
T Consensus 397 ---g~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------~~~l~~~~~d~~v~~w~~-~~~~~~~~~~ 465 (577)
T 2ymu_A 397 ---GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------DQTIASASDDKTVKLWNR-NGQLLQTLTG 465 (577)
T ss_dssp ---SSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT------SSEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred ---CCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCC------CCEEEEECCCCEEEEEEC-CCCEEEEECC
T ss_conf ---999999949998999969-99789896288997579999899------999999939998999979-9988999727
Q ss_pred CCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEECCCCCC
Q ss_conf 99982899994999999999748999889998899998999908999817788711122321641113434277078434
Q 000450 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSV 747 (1496)
Q Consensus 668 H~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh~a~~i~~~~~~~~~~~~~sg~i~~g~~~~ 747 (1496)
|...|.+++|+|++++|++++.| +.|++||. ++++.+.+.+|...+....|.+. |..
T Consensus 466 ~~~~v~~~~~spd~~~las~~~d--------~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~d------------g~~-- 522 (577)
T 2ymu_A 466 HSSSVRGVAFSPDGQTIASASDD--------KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------------GQT-- 522 (577)
T ss_dssp CSSCEEEEEECTTSCEEEEEETT--------SEEEEEET-TSCEEEEEECCSSCEEEEEECTT------------SSC--
T ss_pred CCCCEEEEEECCCCCEEEEEECC--------CEEEEECC-CCCEEEEEECCCCCEEEEEECCC------------CCE--
T ss_conf 89977899996999999999198--------97999939-99789998679999899999189------------999--
Q ss_pred CCCCEEECCCCCEEEECC
Q ss_conf 335211014995786126
Q 000450 748 SSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 748 s~~l~~i~~D~~ir~W~l 765 (1496)
++....|++++.|+.
T Consensus 523 ---l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 523 ---IASASDDKTVKLWNR 537 (577)
T ss_dssp ---EEEEETTSEEEEECT
T ss_pred ---EEEEECCCEEEEEEC
T ss_conf ---999989699999969
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=326.24 Aligned_cols=533 Identities=12% Similarity=0.066 Sum_probs=326.9
Q ss_pred EEECCCC---------CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCC-
Q ss_conf 6741899---------999508999993899979998078859999866789972022488406443446755303332-
Q 000450 7 ACIWSGT---------PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAM- 76 (1496)
Q Consensus 7 ~~lw~~~---------~p~h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~- 76 (1496)
..||... .+.+.|++++|+||+++||+|+.||+|++||+.. .+......+.+|.++|.+++|.+-..
T Consensus 41 v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~---~~~~~~~~~~~~~~~v~~v~fs~dg~~ 117 (611)
T 1nr0_A 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ---TTHILKTTIPVFSGPVKDISWDSESKR 117 (611)
T ss_dssp EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS---TTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred EEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC---CCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 99945787242737658998659999999996899994899789948989---841566762255784489998999997
Q ss_pred --CCCC-----CCCCCCCCCC--------CCCCCC-CCCCCCC-EEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCE
Q ss_conf --0368-----6322222235--------666445-5469999-899983798199998899817885319998788947
Q 000450 77 --VSRD-----GKAEHWKAEN--------SSNVMG-KSSLDNG-ALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSV 139 (1496)
Q Consensus 77 --~s~d-----g~~~~~~~~~--------~~~~~~-~~s~d~~-~LvSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~ 139 (1496)
..++ |....|+..+ .+.+.. .++++++ +|+|++.|+++++||...++++....-+ .....
T Consensus 118 l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H---~~~V~ 194 (611)
T 1nr0_A 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH---TKFVH 194 (611)
T ss_dssp EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC---SSCEE
T ss_pred EEEEECCCCCEEEEEEEECCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCC---CCCEE
T ss_conf 999989977366999963899763254788983699988999829999928980999979997576652002---57169
Q ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCC----CCCCC
Q ss_conf 99748999599990300235876665312222466434456788899996279999787507999985176----43587
Q 000450 140 ICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGN----LSIGP 215 (1496)
Q Consensus 140 i~~~~~~~~ll~~g~~~id~~~l~~~~~~~si~~~~~~~d~~~~~~~~~~~~i~i~d~~t~~il~~l~s~~----~s~~~ 215 (1496)
...|++++.+++++.. ++.|.+||..+.+.+..+.... .+.++
T Consensus 195 ~v~fspdg~~las~s~---------------------------------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGG---------------------------------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEEECTTSSEEEEEET---------------------------------TSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEEECCCCCEEEEEEC---------------------------------CCCEEEEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 9999799998999989---------------------------------9919998899982866513664323566787
Q ss_pred EEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEE
Q ss_conf 27999953057887115999918882999997889865322478754578841001002675457319999029969999
Q 000450 216 WKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIAL 295 (1496)
Q Consensus 216 i~~~~v~~~~~d~~~~~~lias~dG~i~vW~l~~~~~~~~~~~~~l~~~ek~i~~~~~~~~~~~~~~~vs~s~~g~~i~~ 295 (1496)
+..++|+ |+++ .++.++.||+|++|++...+... .+ .... ......+.+..++..+++
T Consensus 242 V~~v~~s---pdg~--~l~s~s~D~~v~lWd~~~~~~~~------------~~---~~~~--~~~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 242 VFGLTWS---PDGT--KIASASADKTIKIWNVATLKVEK------------TI---PVGT--RIEDQQLGIIWTKQALVS 299 (611)
T ss_dssp EEEEEEC---TTSS--EEEEEETTSEEEEEETTTTEEEE------------EE---ECCS--SGGGCEEEEEECSSCEEE
T ss_pred EEEEEEC---CCCC--EEEEEECCCEEEEEECCCCCEEE------------EE---CCCC--CCCCEEEEEEECCCEEEE
T ss_conf 8999997---9999--99999089809999688870134------------40---4788--766406899973887999
Q ss_pred EECCEEEEEECCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEEECHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEE
Q ss_conf 91983799975888642115542030485178888505544872000222101345523555412999928996999997
Q 000450 296 VLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAI 375 (1496)
Q Consensus 296 v~~~~~~~~l~d~~~~ige~~~~~~~lc~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~vw~~~G~~~iy~i 375 (1496)
...+.. +++|+... ++.. ..+ ..+ ...+.......+ ...++..+.+|.+.+|++
T Consensus 300 ~s~d~~-i~~~~~~~--~~~~---~~~--~gh---~~~v~~l~~spd---------------g~~l~s~s~D~~v~~Wd~ 353 (611)
T 1nr0_A 300 ISANGF-INFVNPEL--GSID---QVR--YGH---NKAITALSSSAD---------------GKTLFSADAEGHINSWDI 353 (611)
T ss_dssp EETTCC-EEEEETTT--TEEE---EEE--CCC---SSCEEEEEECTT---------------SSEEEEEETTSCEEEEET
T ss_pred EECCCC-EEEEECCC--CCCC---EEE--CCC---CCCEEEEEEECC---------------CCEEEEEECCCCEEEEEC
T ss_conf 958996-89996889--9744---698--378---888899999189---------------998999958984999978
Q ss_pred ECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCC
Q ss_conf 24788776557043067678988502377841220466632121034555544571799982345789985303851587
Q 000450 376 SYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGF 455 (1496)
Q Consensus 376 ~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~ 455 (1496)
..... ....+ .........+.|...+ .+++.. ++..+++|.+.............-..+.
T Consensus 354 ~~~~~------~~~~~--~~h~~~v~~~~~s~~~-~l~s~s-----------~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 354 STGIS------NRVFP--DVHATMITGIKTTSKG-DLFTVS-----------WDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp TTCCE------EECSS--CSCSSCEEEEEECTTS-CEEEEE-----------TTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred CCCCE------EEECC--CCCCCEEEEEEECCCC-CEEEEE-----------CCCCEEEEECCCCCCCCCCEEEEECCCC
T ss_conf 87925------63216--6776507899987899-699998-----------4896689546885435652120014899
Q ss_pred CEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCC
Q ss_conf 05662136654568889401202113356861233456788789862013337853899996205653598999999699
Q 000450 456 SFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSG 535 (1496)
Q Consensus 456 ~~~~w~~~~~~~~~~dg~~~~~l~~s~~~s~v~~Wd~~~~~~~~~l~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~dG 535 (1496)
....-+ .++| ++........+++|+.. + ...+ .|...++++.+.++.. .+++|+.||
T Consensus 414 ~~~~~~-------s~dg----~~~~~~~~~~v~~~~~~------~-~~~~-~~~~~v~~va~spdg~----~lasgs~D~ 470 (611)
T 1nr0_A 414 PLGLAV-------SADG----DIAVAACYKHIAIYSHG------K-LTEV-PISYNSSCVALSNDKQ----FVAVGGQDS 470 (611)
T ss_dssp EEEEEE-------CTTS----SCEEEEESSEEEEEETT------E-EEEE-ECSSCEEEEEECTTSC----EEEEEETTS
T ss_pred CCEEEE-------ECCC----CEEEEEECCEEEEEECC------C-EEEE-ECCCCCEEEEEECCCC----EEEEECCCC
T ss_conf 707998-------0799----69999967639998489------4-3464-0688954999928998----999968997
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCC-CCEE
Q ss_conf 299998045434799988433577626799834886689999921787765676897999996999499997999-9569
Q 000450 536 EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLI 614 (1496)
Q Consensus 536 ~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~t-g~~l 614 (1496)
.|++|..+. ........ .+|.+.|++++|+|+ +++|++++.|++|++||+.+ +++.
T Consensus 471 ~v~lwd~~~-------------~~~~~~~~-~~h~~~v~~v~fspd---------g~~las~s~d~~v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 471 KVHVYKLSG-------------ASVSEVKT-IVHPAEITSVAFSNN---------GAFLVATDQSRKVIPYSVANNFELA 527 (611)
T ss_dssp EEEEEEEET-------------TEEEEEEE-EECSSCEEEEEECTT---------SSEEEEEETTSCEEEEEGGGTTEES
T ss_pred EEEEEECCC-------------CCEEEEEC-CCCCCCEEEEEECCC---------CCEEEEECCCCCEEEEECCCCCCEE
T ss_conf 399999459-------------92224101-577886079999899---------9989999489989998857787223
Q ss_pred EE--ECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCC-EE-EEECCC-CCCCEEEEECCCCCEEEEEEC
Q ss_conf 99--80269878999989999999999999999689809999889992-88-994279-998289999499999999974
Q 000450 615 TV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VE-RMFPGH-PNYPAKVVWDCPRGYIACLCR 689 (1496)
Q Consensus 615 ~~--l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~-~l-~~~~gH-~~~V~~V~wspd~~~Lvtgs~ 689 (1496)
.. +..|.+.|.+++|+|+ ++++++++.|++|++|+++++. ++ ..+.+| ...|.+++|+|++. |++++.
T Consensus 528 ~~~~~~~H~~~V~~v~fspd------g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~ 600 (611)
T 1nr0_A 528 HTNSWTFHTAKVACVSWSPD------NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQ 600 (611)
T ss_dssp CCCCCCCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEET
T ss_pred EEEEEEECCCCEEEEEECCC------CCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECC
T ss_conf 21026404664258998998------99799997997299997887555632644467656711899858997-999528
Q ss_pred CCCCCCCCCCEEEEEECC
Q ss_conf 899988999889999899
Q 000450 690 DHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 690 D~s~~~D~dg~I~VWDi~ 707 (1496)
| ++|++|++.
T Consensus 601 D--------~~i~lW~~~ 610 (611)
T 1nr0_A 601 D--------SNIKFWNVP 610 (611)
T ss_dssp T--------SCEEEEECC
T ss_pred C--------CCEEEEECC
T ss_conf 8--------778998444
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=312.13 Aligned_cols=551 Identities=12% Similarity=0.062 Sum_probs=351.0
Q ss_pred EEEECCCCC--CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCC--CEEEEEEEECCCCC-EEEEEECCCCCCCCC
Q ss_conf 467418999--9950899999389997999807885999986678997--20224884064434-467553033320368
Q 000450 6 VACIWSGTP--PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYS--EIKPVAMLCGHSAP-IADLSICYPAMVSRD 80 (1496)
Q Consensus 6 ~~~lw~~~~--p~h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~--~~~~~~~L~GHt~~-Vt~La~c~~~~~s~d 80 (1496)
-.-+|.+.| +...|++++|+||+++|++++ |+.|.+|++.+ + ...+...+.+|..+ |++++
T Consensus 6 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~---~~~~~~~~~~~~~h~~~~v~~~~---------- 71 (615)
T 1pgu_A 6 LKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDD---GDSKVPPVVQFTGHGSSVVTTVK---------- 71 (615)
T ss_dssp EEEEECCCCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCS---SCCSSCSEEEECTTTTSCEEEEE----------
T ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCEEEEEECCC---CCCCCCCCEEEECCCCCEEEEEE----------
T ss_conf 52315999877658536899889999799935-98499997778---87765143188057884499999----------
Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCC--------EEEEEECCCCCCCCCCEEEECCCCCEEE
Q ss_conf 63222222356664455469--9998999837981999988998--------1788531999878894799748999599
Q 000450 81 GKAEHWKAENSSNVMGKSSL--DNGALISACTDGVLCVWSRSSG--------HCRRRRKLPPWVGSPSVICTLPSNPRYV 150 (1496)
Q Consensus 81 g~~~~~~~~~~~~~~~~~s~--d~~~LvSas~DG~I~VWdv~~G--------~ci~~~~l~~~~g~~~~i~~~~~~~~ll 150 (1496)
+++ ++.+|++++.||.|++||+.++ .++.....+ ..+.....+.+++.++
T Consensus 72 -----------------~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l 131 (615)
T 1pgu_A 72 -----------------FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL---AGPISDISWDFEGRRL 131 (615)
T ss_dssp -----------------ECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC---SSCEEEEEECTTSSEE
T ss_pred -----------------ECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCC---CCCEEEEEEECCCCEE
T ss_conf -----------------79678998899964898799976888765544554200011125---6637999990799989
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 99030023587666531222246643445678889999627999978750799998517643587279999530578871
Q 000450 151 CIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGK 230 (1496)
Q Consensus 151 ~~g~~~id~~~l~~~~~~~si~~~~~~~d~~~~~~~~~~~~i~i~d~~t~~il~~l~s~~~s~~~i~~~~v~~~~~d~~~ 230 (1496)
+++..-.+ ....+.+||. .+.+..+.. ..+++.++.|++ +++
T Consensus 132 ~~~~~~~~-----------------------------~~~~v~~~d~--~~~~~~~~~---~~~~v~~~~~~~---~~~- 173 (615)
T 1pgu_A 132 CVVGEGRD-----------------------------NFGVFISWDS--GNSLGEVSG---HSQRINACHLKQ---SRP- 173 (615)
T ss_dssp EEEECCSS-----------------------------CSEEEEETTT--CCEEEECCS---CSSCEEEEEECS---SSS-
T ss_pred EEECCCCC-----------------------------CCCEEEEEEC--CCCCEEEEC---CCCCEEEEEECC---CCC-
T ss_conf 99316877-----------------------------7557999978--981031306---774388999887---899-
Q ss_pred EEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC---CCEEEEEECC-CCEEEEEECCEE-EEEE
Q ss_conf 1599991888299999788986532247875457884100100267545---7319999029-969999919837-9997
Q 000450 231 HYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVE---GGHLVSVATC-GNIIALVLKDHC-IFRL 305 (1496)
Q Consensus 231 ~~~lias~dG~i~vW~l~~~~~~~~~~~~~l~~~ek~i~~~~~~~~~~~---~~~~vs~s~~-g~~i~~v~~~~~-~~~l 305 (1496)
..++.++.||.+++|++..... + .....+.. .+..++++++ +..+++++.++. .+|.
T Consensus 174 ~~l~~~~~d~~v~vwd~~~~~~---------------~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 174 MRSMTVGDDGSVVFYQGPPFKF---------------S---ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp CEEEEEETTTEEEEEETTTBEE---------------E---EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred CEEEEEECCCCEEEEECCCCCE---------------E---EEECCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEE
T ss_conf 6899995799599996999610---------------1---320256777742899997897788899986898089998
Q ss_pred CCCCCCCCEEEEECCEEEEECC--CCCCEEEEEEEEECHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf 5888642115542030485178--88850554487200022210134552355541299992899699999724788776
Q 000450 306 LGSGSTIGEICFVDNLFCLEGG--STNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFD 383 (1496)
Q Consensus 306 ~d~~~~ige~~~~~~~lc~~~~--~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~vw~~~G~~~iy~i~~~~~~~~ 383 (1496)
+..+..+..+ ... ........-.+. + ...++..+.+|.+.+|++....
T Consensus 236 ~~~~~~~~~~---------~~~~~~~~~~v~~~~~~--~---------------~~~l~~~~~d~~i~~wd~~~~~---- 285 (615)
T 1pgu_A 236 GKSGEFLKYI---------EDDQEPVQGGIFALSWL--D---------------SQKFATVGADATIRVWDVTTSK---- 285 (615)
T ss_dssp TTTCCEEEEC---------CBTTBCCCSCEEEEEES--S---------------SSEEEEEETTSEEEEEETTTTE----
T ss_pred CCCCCEEEEE---------CCCCCCCCCCEEEEEEC--C---------------CCEEEEECCCCCEEEEECCCCC----
T ss_conf 9999785895---------25444567755899981--8---------------9979998489948999788892----
Q ss_pred CCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEE-CCCCCE-EEEC
Q ss_conf 55704306767898850237784122046663212103455554457179998234578998530385-158705-6621
Q 000450 384 YEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMV-GEGFSF-VDWV 461 (1496)
Q Consensus 384 ~~~~~~ip~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l-~~G~~~-~~w~ 461 (1496)
.......+.. ........+.|. .+.+++... .++ .+.+|.+... .....+ ...... .+-+
T Consensus 286 ~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-----~~g------~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 286 CVQKWTLDKQ-QLGNQQVGVVAT-GNGRIISLS-----LDG------TLNFYELGHD-----EVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEEEECCTT-CGGGCEEEEEEE-ETTEEEEEE-----TTS------CEEEEETTEE-----EEEEEECCCSSCEEEEET
T ss_pred EEEEECCCCC-CCCCCEEEEEEC-CCCEEEEEE-----CCC------CEEEEECCCC-----CEEEEEECCCCCEEEEEE
T ss_conf 7878847877-545714699918-997699997-----899------7899988899-----288999477787899995
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 36654568889401202113356861233456788789862013337853899996205653598999999699299998
Q 000450 462 NNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQ 541 (1496)
Q Consensus 462 ~~~~~~~~~dg~~~~~l~~s~~~s~v~~Wd~~~~~~~~~l~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~ 541 (1496)
+ + +.....++.+++|+.. ... ..|...|+++.+ +... .+++++.||.+.+|.
T Consensus 348 -~-------~------l~~~~~dg~i~~w~~~-------~~~--~~~~~~v~~~~~-~~~~----~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 348 -N-------P------LISGSYDGRIMEWSSS-------SMH--QDHSNLIVSLDN-SKAQ----EYSSISWDDTLKVNG 399 (615)
T ss_dssp -T-------T------TEEEETTSCEEETTTT-------EEE--CCCCSCEEEEEC-CSTT----CCEEEETTTEEEETT
T ss_pred -C-------C------CEEECCCCEEEEEECH-------HHC--CCCCCCEEEEEE-CCCC----EEEEEECCCCEEEEE
T ss_conf -6-------7------4898799959998752-------415--755685179997-8986----799995899799988
Q ss_pred ECCCCC-------------------CCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEC-CC
Q ss_conf 045434-------------------7999884335776267998348866899999217877656768979999969-99
Q 000450 542 FDLFER-------------------HNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC 601 (1496)
Q Consensus 542 ~d~l~~-------------------~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~-Dg 601 (1496)
...... .+.....|+..+++....+. |...+++++++ +.++++++. |+
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~l~~~~~~d~ 467 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-----------QNYVAVGLEEGN 467 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC-----------SSEEEEEETTTS
T ss_pred CCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECC-CCCCCEEEEEC-----------CCEEEEEECCCC
T ss_conf 666763678469998289878999679826999446786655515-67872077883-----------888999656898
Q ss_pred CEEEEECCCCCEE-EEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECC-CCCCCEEEEECC
Q ss_conf 4999979999569-99802698789999899999999999999996898099998899928899427-999828999949
Q 000450 602 SIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG-HPNYPAKVVWDC 679 (1496)
Q Consensus 602 tI~iWDl~tg~~l-~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~g-H~~~V~~V~wsp 679 (1496)
.|++||+..++.. ..+..|...|.++.|+|+ ++++++++.|+.|++||+++++++..+.+ |...|++++|+|
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPS------ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred EEEEEECCCCCCCCCCCCCCCCCEEEEEECCC------CCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECC
T ss_conf 69999888854353336776575079999899------998998179985998657777624676047887146999768
Q ss_pred ----------CCCEEEEEECCCCCCCCCCCEEEEEECCCC-EEEEEEECCCCCCEEEEEECCCCCCCCCCEEECCCCCCC
Q ss_conf ----------999999997489998899988999989999-089998177887111223216411134342770784343
Q 000450 680 ----------PRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVS 748 (1496)
Q Consensus 680 ----------d~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg-~~~~~l~gh~a~~i~~~~~~~~~~~~~sg~i~~g~~~~s 748 (1496)
++++|++++.| +.|++||+.++ ++...+.+|...+....|.+. +.
T Consensus 542 ~~~~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~------------~~---- 597 (615)
T 1pgu_A 542 AEKGANEEEIEEDLVATGSLD--------TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP------------ST---- 597 (615)
T ss_dssp CC------CCSCCEEEEEETT--------SCEEEEESSCTTCCEEETTSSTTCEEEEEEEET------------TE----
T ss_pred CCCCCCCCCCCCCEEEEECCC--------CCEEEEECCCCCEECHHHHCCCCCEEEEEECCC------------CC----
T ss_conf 323453324688889998179--------719999778885403113359430589997389------------97----
Q ss_pred CCCEEECCCCCEEEECCC
Q ss_conf 352110149957861266
Q 000450 749 SLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 749 ~~l~~i~~D~~ir~W~l~ 766 (1496)
++....|++++.|+++
T Consensus 598 --l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 598 --LVSSGADACIKRWNVV 613 (615)
T ss_dssp --EEEEETTSCEEEEEEC
T ss_pred --EEEECCCCEEEEEEEE
T ss_conf --2884599639999601
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=305.53 Aligned_cols=540 Identities=10% Similarity=-0.033 Sum_probs=302.3
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99950899999389997999807885999986678997202248840644344675530333203686322222235666
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~p~h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
.+...|++++|+||+++||+|+.||.|++|+... . ... ...+|..+|.+++
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~---~--~~~-~~~~~~~~V~~l~----------------------- 65 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ---V--EVV-IKLEDRSAIKEMR----------------------- 65 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT---C--EEE-EECSSCCCEEEEE-----------------------
T ss_pred CCCCCCEEEEECCCCCEEEEEECCCEEEEEECCC---C--EEE-EECCCCCCEEEEE-----------------------
T ss_conf 8899848999979999899992979899996899---4--799-9868999779999-----------------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44554699998999837981999988998178853199987889479974899959999030023587666531222246
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEG 173 (1496)
Q Consensus 94 ~~~~~s~d~~~LvSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~~~~~~ll~~g~~~id~~~l~~~~~~~si~~ 173 (1496)
|++ +.+|+|++.|++|++||+.+++++.....+ .......+.+++.++++|..
T Consensus 66 ----fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~----~~V~~v~~sp~g~~l~sgs~------------------ 118 (902)
T 2oaj_A 66 ----FVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVP----GKITSIDTDASLDWMLIGLQ------------------ 118 (902)
T ss_dssp ----EET-TTEEEEEETTCEEEEEETTTCSEEEEEECS----SCEEEEECCTTCSEEEEEET------------------
T ss_pred ----ECC-CCEEEEEECCCEEEEEECCCCCEEEEECCC----CCEEEEEECCCCCEEEEECC------------------
T ss_conf ----908-988999989595999989999689997489----98799998799998999949------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCEEEE-EEE-------ECCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf 643445678889999627999978750799-998-------517643587279999530578871159999188829999
Q 000450 174 DLVSEDKEVPMKNPPKCTLVIVDTYGLTIV-QTV-------FHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLV 245 (1496)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~i~i~d~~t~~il-~~l-------~s~~~s~~~i~~~~v~~~~~d~~~~~~lias~dG~i~vW 245 (1496)
++.|.+||..+.++. +.+ .....+.++|..++|.|. +. ..+++++.||.+ +|
T Consensus 119 ---------------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~---~~-~~l~~g~~dg~v-lW 178 (902)
T 2oaj_A 119 ---------------NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR---DI-GTVLISYEYVTL-TY 178 (902)
T ss_dssp ---------------TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT---EE-EEEEEECSSCEE-EE
T ss_pred ---------------CCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCC---CC-CEEEEEECCCCE-EE
T ss_conf ---------------99299999999962650304321000254457897389997669---99-989999189849-99
Q ss_pred ECCCCCCCCCCCCC---CCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCCCCEEEEECCEE
Q ss_conf 97889865322478---754578841001002675457319999029969999919837999758886421155420304
Q 000450 246 PISKESHLDREEGN---GLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLF 322 (1496)
Q Consensus 246 ~l~~~~~~~~~~~~---~l~~~ek~i~~~~~~~~~~~~~~~vs~s~~g~~i~~v~~~~~~~~l~d~~~~ige~~~~~~~l 322 (1496)
++........-... .-....... .....+...+..++|+|+|..+++++.++. +++||... ++......+.
T Consensus 179 d~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~--g~~~~~r~l~ 252 (902)
T 2oaj_A 179 SLVENEIKQSFIYELPPFAPGGDFSE---KTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANS--GHMIMARTVF 252 (902)
T ss_dssp ETTTTEEEEEECCCBCTTCCCSTTCC---CTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTT--CCEEEEECSS
T ss_pred ECCCCCEEEEEECCCCCCCCCCCCCC---CCCCCCCCCEEEEEECCCCCEEEEEECCCE-EEEEECCC--CCEEEEEEEC
T ss_conf 87789657998335577677765443---323456777689998599999999989993-99998789--9688888501
Q ss_pred EEECCC------C----CCEEEEE-EEEECHHHHHHCCCCCCCCCCCCEEEEECCC-----CCEEEEEEECCCCCC----
Q ss_conf 851788------8----8505544-8720002221013455235554129999289-----969999972478877----
Q 000450 323 CLEGGS------T----NSYVIGA-MFLERVVAEKIENTMGVCTTFYENFAVWDNR-----GSAIVYAISYMNEKF---- 382 (1496)
Q Consensus 323 c~~~~~------~----~~~~v~g-~~~~~~~~~~~~~~~~~~~~~~~~v~vw~~~-----G~~~iy~i~~~~~~~---- 382 (1496)
....+. . ....+.. .|..... +++ ...++.++.+ ..+.++.+.......
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~---------pd~--~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~ 321 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENN---------PEY--TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSY 321 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS---------TTE--EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC---------CCC--CEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCH
T ss_conf 23457877767888855567745799973499---------988--7899968877778885289995478987555425
Q ss_pred ----------CCCCEEEECCCCCCCCCEEEEEEEE----------CCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCC
Q ss_conf ----------6557043067678988502377841----------22046663212103455554457179998234578
Q 000450 383 ----------DYEPHFEIPAVSYPSGVKFSIHFIQ----------MSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHS 442 (1496)
Q Consensus 383 ----------~~~~~~~ip~~~~~~~~~~~~~f~~----------~~~~L~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~ 442 (1496)
.....+.+ . .......+.|.. +...++... .+ ..+.+|++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s-----~d------g~l~~~~~~~--- 383 (902)
T 2oaj_A 322 EGMKNYYANPKQMKIFPL---P-TNVPIVNILPIPRQSPYFAGCHNPGLILLIL-----GN------GEIETMLYPS--- 383 (902)
T ss_dssp HHHHHHHHSCSEEEEECC---S-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEE-----TT------SCEEEEETTT---
T ss_pred HHHHHHHCCCCCEEEEEC---C-CCCCEEEEEECCCCCCCCCCCCCCEEEEEEC-----CC------CCEEEEECCC---
T ss_conf 565466417452278741---8-9995479999778898867787850699991-----79------8489997899---
Q ss_pred CCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 99853038515870566213665456888940120211335686123345678878986201333785389999620565
Q 000450 443 GPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESF 522 (1496)
Q Consensus 443 ~~~~~~k~l~~G~~~~~w~~~~~~~~~~dg~~~~~l~~s~~~s~v~~Wd~~~~~~~~~l~~~~~~h~~~Vts~~~is~~~ 522 (1496)
+..+....... ... ......+ ..........++|+...... ++....+.+|...+.++.
T Consensus 384 --g~~~~~~~~~~----~~l------~~~~~~v--~~~~~s~~~~~~w~~~~~~~-~~~~~~l~G~~~~v~sv~------ 442 (902)
T 2oaj_A 384 --GIFTDKASLFP----QNL------SWLRPLA--TTSMAASVPNKLWLGALSAA-QNKDYLLKGGVRTKRQKL------ 442 (902)
T ss_dssp --CCEECCGGGSC----GGG------TTBTTBE--EEEEEEEEEHHHHHHHHHTT-BCCCCSCCCSBCCCCCCC------
T ss_pred --CCCCCCCCCCC----CCC------CCCCCCE--EEEEEEECCHHHHHHHHHCC-CCCCCCCCCCCCCCCCCC------
T ss_conf --98556555689----852------2358972--48999974999998888604-699975457857787533------
Q ss_pred CCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEE-EEE-----CCCCCEEEEEEECCCCCCCCCCCCCEE
Q ss_conf 3598--99999969929999804543479998843357762679-983-----488668999992178776567689799
Q 000450 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ-YFL-----GHTGAVLCLAAHRMVGTAKGWSFNEVL 594 (1496)
Q Consensus 523 f~P~--~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~-~l~-----gH~~~V~~L~~spd~~~~~~~~~~~~L 594 (1496)
|+|+ .+++|+.||+|++|.... + . ........ .+. +|...|++++|+|+ +++|
T Consensus 443 ~spdg~~laSgs~DgtVrlWd~~~--g-----~---~~~~~~~~~~l~~~~~~~h~~~V~svafspd---------g~~L 503 (902)
T 2oaj_A 443 PAEYGTAFITGHSNGSVRIYDASH--G-----D---IQDNASFEVNLSRTLNKAKELAVDKISFAAE---------TLEL 503 (902)
T ss_dssp CCSEEEEEEEEETTSEEEEEESSC--C-----T---TTTTBCEEEEHHHHTTCSSSCCEEEEEEETT---------TTEE
T ss_pred CCCCCCEEEEECCCCCEEEEECCC--C-----C---CCCCCEEEEECHHHCCCCCCCCEEEEEECCC---------CCEE
T ss_conf 366675899965898389997877--6-----4---5677367750154137788876469996389---------9969
Q ss_pred EEEECCCCEEEEECCCC---------------------------------------------CEEEEECCCCCCEEEEEE
Q ss_conf 99969994999979999---------------------------------------------569998026987899998
Q 000450 595 VSGSMDCSIRIWDLGSG---------------------------------------------NLITVMHHHVAPVRQIIL 629 (1496)
Q Consensus 595 vSGs~DgtI~iWDl~tg---------------------------------------------~~l~~l~~H~~~V~~i~~ 629 (1496)
++|+.|++|++||+.++ +++..+.+|.++|++++|
T Consensus 504 Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf 583 (902)
T 2oaj_A 504 AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN 583 (902)
T ss_dssp EEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred EEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 99945857999992486555754557786651134551346796543224236898877760146999868886779996
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEE-----EC-CCCCCCEEEEEC-----CCC---CEEEEEECCCCCCC
Q ss_conf 99999999999999996898099998899928899-----42-799982899994-----999---99999974899988
Q 000450 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-----FP-GHPNYPAKVVWD-----CPR---GYIACLCRDHSRTS 695 (1496)
Q Consensus 630 sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~-----~~-gH~~~V~~V~ws-----pd~---~~Lvtgs~D~s~~~ 695 (1496)
+|+ + ++++++.|++|++||+++...+.. +. +|...|++++|+ ||+ .+|++++.|
T Consensus 584 Spd------G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D----- 651 (902)
T 2oaj_A 584 SNI------G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM----- 651 (902)
T ss_dssp CBT------S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT-----
T ss_pred CCC------C-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECC-----
T ss_conf 487------6-8999958976999988898399970246726466661399999998417898763389999568-----
Q ss_pred CCCCEEEEEEC---CCCEEEEEEECCC
Q ss_conf 99988999989---9990899981778
Q 000450 696 DAVDVLFIWDV---KTGARERVLRGTA 719 (1496)
Q Consensus 696 D~dg~I~VWDi---~tg~~~~~l~gh~ 719 (1496)
++|++||+ .+|+....+.||.
T Consensus 652 ---~tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 652 ---GEVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp ---SEEEEEEEEECGGGCEEEEEEEEE
T ss_pred ---CCEEEEEEECCCCCCEEEEECCCE
T ss_conf ---739999995589986899966724
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=300.78 Aligned_cols=499 Identities=14% Similarity=0.127 Sum_probs=320.8
Q ss_pred CCCE-EEEEEECC--CCCEEEEEECCCCEEEEECCCCCCC------CEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 9950-89999938--9997999807885999986678997------2022488406443446755303332036863222
Q 000450 15 PSHR-VTATSALT--QPPTLYTGGSDGSILWWSFSDSSYS------EIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEH 85 (1496)
Q Consensus 15 p~h~-Vtaia~Sp--Dg~~LvTGs~DG~I~lWdl~~~~~~------~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~ 85 (1496)
+... |++++|+| |+++|++|+.||.|++||+.. + +......+.+|..+|.+++
T Consensus 62 h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~--------------- 123 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF---DKESNSVEVNVKSEFQVLAGPISDIS--------------- 123 (615)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE---EGGGTEEEEEEEEEEECCSSCEEEEE---------------
T ss_pred CCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCC---CCCCCCCCCCCCCHHHCCCCCEEEEE---------------
T ss_conf 788449999979678998899964898799976888---76554455420001112566379999---------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECC----CEEEEEECCCCEEEEEECCCCCCCCCCEEEECCCCC--EEEEECCCCCCC
Q ss_conf 22235666445546999989998379----819999889981788531999878894799748999--599990300235
Q 000450 86 WKAENSSNVMGKSSLDNGALISACTD----GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP--RYVCIGCCFIDT 159 (1496)
Q Consensus 86 ~~~~~~~~~~~~~s~d~~~LvSas~D----G~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~~~~~--~ll~~g~~~id~ 159 (1496)
+++++.+|++++.| +.+.+|| .++++.....+ ........+.+++ .+++.+.+
T Consensus 124 ------------~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d---- 182 (615)
T 1pgu_A 124 ------------WDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH---SQRINACHLKQSRPMRSMTVGDD---- 182 (615)
T ss_dssp ------------ECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC---SSCEEEEEECSSSSCEEEEEETT----
T ss_pred ------------EECCCCEEEEECCCCCCCCEEEEEE--CCCCCEEEECC---CCCEEEEEECCCCCCEEEEEECC----
T ss_conf ------------9079998999316877755799997--89810313067---74388999887899689999579----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCC-CCCEEEEEEEECCCC-CCCEEEEEEE
Q ss_conf 87666531222246643445678889999627999978750799998517643-587279999530578-8711599991
Q 000450 160 NQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLS-IGPWKFMDVVSLGED-MGKHYGLMVD 237 (1496)
Q Consensus 160 ~~l~~~~~~~si~~~~~~~d~~~~~~~~~~~~i~i~d~~t~~il~~l~s~~~s-~~~i~~~~v~~~~~d-~~~~~~lias 237 (1496)
+.+.+||..+.+.+..+.. +.. ..++.+++|++ + ++ .+++++
T Consensus 183 ------------------------------~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~---~~~~--~l~~~~ 226 (615)
T 1pgu_A 183 ------------------------------GSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSP---DSGE--FVITVG 226 (615)
T ss_dssp ------------------------------TEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECS---TTCC--EEEEEE
T ss_pred ------------------------------CCEEEEECCCCCEEEEECC-CCCCCCEEEEEEECC---CCCC--EEEEEE
T ss_conf ------------------------------9599996999610132025-677774289999789---7788--899986
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEC-C---CCCCCCEEEEEECCCCEEEEEECCEE-EEEECCCCCCC
Q ss_conf 8882999997889865322478754578841001002-6---75457319999029969999919837-99975888642
Q 000450 238 SVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQ-N---GVVEGGHLVSVATCGNIIALVLKDHC-IFRLLGSGSTI 312 (1496)
Q Consensus 238 ~dG~i~vW~l~~~~~~~~~~~~~l~~~ek~i~~~~~~-~---~~~~~~~~vs~s~~g~~i~~v~~~~~-~~~l~d~~~~i 312 (1496)
.+|.+++|++...+. + ... . .+...+..++++ ++..+++.+.++. .+|.+..+..+
T Consensus 227 ~dg~i~vwd~~~~~~---------------~---~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 227 SDRKISCFDGKSGEF---------------L---KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp TTCCEEEEETTTCCE---------------E---EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCCE---------------E---EEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEE
T ss_conf 898089998999978---------------5---89525444567755899981-8997999848994899978889278
Q ss_pred CEEEEECCEEEEECCCCCCEEEEEEEEECHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECC
Q ss_conf 11554203048517888850554487200022210134552355541299992899699999724788776557043067
Q 000450 313 GEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPA 392 (1496)
Q Consensus 313 ge~~~~~~~lc~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~vw~~~G~~~iy~i~~~~~~~~~~~~~~ip~ 392 (1496)
..+. ..............+. + .+.+++++.+|.+.+|++.... .+..+
T Consensus 288 ~~~~-------~~~~~~~~~~~~~~~~--~---------------~~~l~~~~~~g~i~~~d~~~~~------~~~~~-- 335 (615)
T 1pgu_A 288 QKWT-------LDKQQLGNQQVGVVAT--G---------------NGRIISLSLDGTLNFYELGHDE------VLKTI-- 335 (615)
T ss_dssp EEEE-------CCTTCGGGCEEEEEEE--E---------------TTEEEEEETTSCEEEEETTEEE------EEEEE--
T ss_pred EEEC-------CCCCCCCCCEEEEEEC--C---------------CCEEEEEECCCCEEEEECCCCC------EEEEE--
T ss_conf 7884-------7877545714699918--9---------------9769999789978999888992------88999--
Q ss_pred CCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCE--------EEEC---CCCCEEEEC
Q ss_conf 67898850237784122046663212103455554457179998234578998530--------3851---587056621
Q 000450 393 VSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQC--------RMVG---EGFSFVDWV 461 (1496)
Q Consensus 393 ~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~--------k~l~---~G~~~~~w~ 461 (1496)
.........+.| +. +++.. .++ .+++|.+..-...+.... +.+. ..+...+|.
T Consensus 336 -~~~~~~v~~~~~-~~---l~~~~-----~dg------~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 336 -SGHNKGITALTV-NP---LISGS-----YDG------RIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp -CCCSSCEEEEET-TT---TEEEE-----TTS------CEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred -ECCCCCEEEEEE-CC---CEEEC-----CCC------EEEEEECHHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf -477787899995-67---48987-----999------599987524157556851799978986799995899799988
Q ss_pred CCCC--------CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEC
Q ss_conf 3665--------45688894012021133568612334567887898620133378538999962056535989999996
Q 000450 462 NNST--------FLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF 533 (1496)
Q Consensus 462 ~~~~--------~~~~~dg~~~~~l~~s~~~s~v~~Wd~~~~~~~~~l~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~ 533 (1496)
.... ....++| .+........+.+|+.... +....+ .+...++++.+. ...+++|+.
T Consensus 400 ~~~~~~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~------~~~l~~~~~ 464 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDG----FTAVLTNDDDLLILQSFTG----DIIKSV-RLNSPGSAVSLS------QNYVAVGLE 464 (615)
T ss_dssp EEEEECSSCEEEEEECSSS----EEEEEETTSEEEEEETTTC----CEEEEE-ECSSCEEEEEEC------SSEEEEEET
T ss_pred CCCCCCCCCCEEEEECCCC----CEEEEECCCCEEEEECCCC----CEEEEC-CCCCCCEEEEEC------CCEEEEEEC
T ss_conf 6667636784699982898----7899967982699944678----665551-567872077883------888999656
Q ss_pred -CCCEEEEEECCCCCCCCCCCCCCCCCCCEE-EEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf -992999980454347999884335776267-998348866899999217877656768979999969994999979999
Q 000450 534 -SGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG 611 (1496)
Q Consensus 534 -dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~-~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg 611 (1496)
||.+.+|... ++... ..+.+|...|++++|+|+ +++|++|+.|+.|++||+.++
T Consensus 465 ~d~~i~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~---------g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 465 EGNTIQVFKLS---------------DLEVSFDLKTPLRAKPSYISISPS---------ETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp TTSCEEEEETT---------------EEEEEEECSSCCSSCEEEEEECTT---------SSEEEEEETTSCEEEEETTTT
T ss_pred CCCEEEEEECC---------------CCCCCCCCCCCCCCCEEEEEECCC---------CCEEEECCCCCEEEEEECCCC
T ss_conf 89869999888---------------854353336776575079999899---------998998179985998657777
Q ss_pred CEEEEECC-CCCCEEEEEECC----------CCCCCCCCCEEEEEECCCCEEEEECCCC-CEEEEECCCCCCCEEEEECC
Q ss_conf 56999802-698789999899----------9999999999999968980999988999-28899427999828999949
Q 000450 612 NLITVMHH-HVAPVRQIILSP----------PQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 612 ~~l~~l~~-H~~~V~~i~~sP----------d~~~~~~~~~l~Sgs~DgsV~lwdl~~~-~~l~~~~gH~~~V~~V~wsp 679 (1496)
+.+..+.. |..+|+++.|+| + +.++++++.|+.|++||++++ +++..+.+|...|++++|+|
T Consensus 521 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~ 594 (615)
T 1pgu_A 521 EVKTSRWAFRTSKINAISWKPAEKGANEEEIE------EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 594 (615)
T ss_dssp EEEECCSCCCSSCEEEEEECCCC------CCS------CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE
T ss_pred CCEEEEECCCCCCEEEEEECCCCCCCCCCCCC------CCEEEEECCCCCEEEEECCCCCEECHHHHCCCCCEEEEEECC
T ss_conf 62467604788714699976832345332468------888999817971999977888540311335943058999738
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf 999999997489998899988999989999
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 680 d~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg 709 (1496)
++. |++++.| +.|++|++.++
T Consensus 595 ~~~-l~s~~~d--------~~v~iw~~~~~ 615 (615)
T 1pgu_A 595 PST-LVSSGAD--------ACIKRWNVVLE 615 (615)
T ss_dssp TTE-EEEEETT--------SCEEEEEEC--
T ss_pred CCC-EEEECCC--------CEEEEEEEECC
T ss_conf 997-2884599--------63999960159
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=276.78 Aligned_cols=602 Identities=9% Similarity=-0.002 Sum_probs=334.3
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99508999993899979998078859999866789972022488406443446755303332036863222222356664
Q 000450 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1496)
Q Consensus 15 p~h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1496)
....|++++|+| +++|++++.||+|++||+.. + +....+. |...|++++
T Consensus 57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~---~--~~~~~~~-~~~~V~~v~------------------------ 105 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS---Q--KVLTTVF-VPGKITSID------------------------ 105 (902)
T ss_dssp SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT---C--SEEEEEE-CSSCEEEEE------------------------
T ss_pred CCCCEEEEEECC-CCEEEEEECCCEEEEEECCC---C--CEEEEEC-CCCCEEEEE------------------------
T ss_conf 999779999908-98899998959599998999---9--6899974-899879999------------------------
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEE--------CCCCCC-CCCCEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 4554699998999837981999988998178853--------199987-8894799748999599990300235876665
Q 000450 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRR--------KLPPWV-GSPSVICTLPSNPRYVCIGCCFIDTNQLSDH 165 (1496)
Q Consensus 95 ~~~~s~d~~~LvSas~DG~I~VWdv~~G~ci~~~--------~l~~~~-g~~~~i~~~~~~~~ll~~g~~~id~~~l~~~ 165 (1496)
+++++.+|++++.||+|++||+..+++.... .....| +....+...+.+..++++|..
T Consensus 106 ---~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~---------- 172 (902)
T 2oaj_A 106 ---TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE---------- 172 (902)
T ss_dssp ---CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS----------
T ss_pred ---ECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC----------
T ss_conf ---8799998999949992999999999626503043210002544578973899976699998999918----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECC---------------CCCCCCEEEEEEEECCCCCCC
Q ss_conf 31222246643445678889999627999978750799998517---------------643587279999530578871
Q 000450 166 HSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHG---------------NLSIGPWKFMDVVSLGEDMGK 230 (1496)
Q Consensus 166 ~~~~si~~~~~~~d~~~~~~~~~~~~i~i~d~~t~~il~~l~s~---------------~~s~~~i~~~~v~~~~~d~~~ 230 (1496)
++.+ +||..+.+.+..+... ..+.+++..++|++ +++
T Consensus 173 -----------------------dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp---dg~- 224 (902)
T 2oaj_A 173 -----------------------YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP---NSL- 224 (902)
T ss_dssp -----------------------SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT---TSS-
T ss_pred -----------------------CCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECC---CCC-
T ss_conf -----------------------9849-998778965799833557767776544332345677768999859---999-
Q ss_pred EEEEEEECCCCEEEEECCCCCCCCCCCCCCCC---CCCCCCCEEEECC-CCCCCCEEEEEEC----CC-CEEEEEECCE-
Q ss_conf 15999918882999997889865322478754---5788410010026-7545731999902----99-6999991983-
Q 000450 231 HYGLMVDSVGRLQLVPISKESHLDREEGNGLC---KSSSQLDMAILQN-GVVEGGHLVSVAT----CG-NIIALVLKDH- 300 (1496)
Q Consensus 231 ~~~lias~dG~i~vW~l~~~~~~~~~~~~~l~---~~ek~i~~~~~~~-~~~~~~~~vs~s~----~g-~~i~~v~~~~- 300 (1496)
.++.++.||.|++|++...+.... ..+. .++..... .... .+.+.+..+++++ ++ .++++.+.+.
T Consensus 225 -~lasgs~Dg~i~lWd~~~g~~~~~---r~l~~~~~~~~~~~~-~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 225 -HIITIHEDNSLVFWDANSGHMIMA---RTVFETEINVPQPDY-IRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp -EEEEEETTCCEEEEETTTCCEEEE---ECSSCSCTTSCCTTC-CCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred -EEEEEECCCEEEEEECCCCCEEEE---EEECCCCCCCCCCCC-CCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCC
T ss_conf -999998999399998789968888---850123457877767-888855567745799973499988789996887777
Q ss_pred ---EEEEECCCCCC----------CCEE-EEE--CCEEEEECCCCCCEEEEEEEEECHHHHHHCCCCCCCCCC-CCEEEE
Q ss_conf ---79997588864----------2115-542--030485178888505544872000222101345523555-412999
Q 000450 301 ---CIFRLLGSGST----------IGEI-CFV--DNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTF-YENFAV 363 (1496)
Q Consensus 301 ---~~~~l~d~~~~----------ige~-~~~--~~~lc~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~v~v 363 (1496)
..++.++.+.. +..+ ..+ ...+.. ........-.+......+ ..+.. ...+++
T Consensus 300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~sp~-------~~g~~d~~~l~~ 369 (902)
T 2oaj_A 300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL---PTNVPIVNILPIPRQSPY-------FAGCHNPGLILL 369 (902)
T ss_dssp SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC---SSSSCEEEEEECCSSCSH-------HHHTBSCSEEEE
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEC---CCCCCEEEEEECCCCCCC-------CCCCCCCEEEEE
T ss_conf 8885289995478987555425565466417452278741---899954799997788988-------677878506999
Q ss_pred ECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 92899699999724788776557043067678988502377841220466632121034555544571799982345789
Q 000450 364 WDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSG 443 (1496)
Q Consensus 364 w~~~G~~~iy~i~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~ 443 (1496)
.+.+|.+++|++............ .+.....+.....+.|..... +.|........
T Consensus 370 ~s~dg~l~~~~~~~g~~~~~~~~~--~~~l~~~~~~v~~~~~s~~~~----------------------~~w~~~~~~~~ 425 (902)
T 2oaj_A 370 ILGNGEIETMLYPSGIFTDKASLF--PQNLSWLRPLATTSMAASVPN----------------------KLWLGALSAAQ 425 (902)
T ss_dssp EETTSCEEEEETTTCCEECCGGGS--CGGGTTBTTBEEEEEEEEEEH----------------------HHHHHHHHTTB
T ss_pred ECCCCCEEEEECCCCCCCCCCCCC--CCCCCCCCCCEEEEEEEECCH----------------------HHHHHHHHCCC
T ss_conf 917984899978999855655568--985223589724899997499----------------------99988886046
Q ss_pred CCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC--CCCCC-----CCCCCCEEEEE
Q ss_conf 985303851587056621366545688894012021133568612334567887898--62013-----33785389999
Q 000450 444 PGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGD--GRDDF-----VHKEKIVSSSM 516 (1496)
Q Consensus 444 ~~~~~k~l~~G~~~~~w~~~~~~~~~~dg~~~~~l~~s~~~s~v~~Wd~~~~~~~~~--l~~~~-----~~h~~~Vts~~ 516 (1496)
.+ .....|....++.+.+ .++|. .+.+...++++++||......... ....+ .+|...|+++.
T Consensus 426 ~~---~~~l~G~~~~v~sv~~----spdg~---~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva 495 (902)
T 2oaj_A 426 NK---DYLLKGGVRTKRQKLP----AEYGT---AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS 495 (902)
T ss_dssp CC---CCSCCCSBCCCCCCCC----CSEEE---EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE
T ss_pred CC---CCCCCCCCCCCCCCCC----CCCCC---EEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEE
T ss_conf 99---9754578577875333----66675---89996589838999787764567736775015413778887646999
Q ss_pred EECCCCCCCCEEEEEECCCCEEEEEECCCCC--------C-CC------------CCC---C-----CCCC-CCCEEEEE
Q ss_conf 6205653598999999699299998045434--------7-99------------988---4-----3357-76267998
Q 000450 517 VISESFYAPYAIVYGFFSGEIEVIQFDLFER--------H-NS------------PGA---S-----LKVN-SHVSRQYF 566 (1496)
Q Consensus 517 ~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~--------~-d~------------~~~---~-----~d~~-s~~~~~~l 566 (1496)
+.++.. .+++|+.||+|++|.++.... . +. +.. . .... ...+...+
T Consensus 496 fspdg~----~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 571 (902)
T 2oaj_A 496 FAAETL----ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV 571 (902)
T ss_dssp EETTTT----EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE
T ss_pred ECCCCC----EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 638999----6999945857999992486555754557786651134551346796543224236898877760146999
Q ss_pred ECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEE-----EC-CCCCCEEEEEEC-----CCCCC
Q ss_conf 34886689999921787765676897999996999499997999956999-----80-269878999989-----99999
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-----MH-HHVAPVRQIILS-----PPQTE 635 (1496)
Q Consensus 567 ~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~-----l~-~H~~~V~~i~~s-----Pd~~~ 635 (1496)
.+|.+.|++++|+|+ + +|++|+.|++|++||++.+..+.. +. +|.+.|++++|+ ||+
T Consensus 572 ~~h~~~V~svafSpd---------G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg-- 639 (902)
T 2oaj_A 572 HANKGKTSAINNSNI---------G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG-- 639 (902)
T ss_dssp CCCSCSEEEEEECBT---------S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS--
T ss_pred ECCCCCEEEEEECCC---------C-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCC--
T ss_conf 868886779996487---------6-8999958976999988898399970246726466661399999998417898--
Q ss_pred CCCCCEEEEEECCCCEEEEEC---CCCCEEEEECCCC-----CCCEEEE-EC----------------------CCCCEE
Q ss_conf 999999999968980999988---9992889942799-----9828999-94----------------------999999
Q 000450 636 HPWSDCFLSVGEDFSVALASL---ETLRVERMFPGHP-----NYPAKVV-WD----------------------CPRGYI 684 (1496)
Q Consensus 636 ~~~~~~l~Sgs~DgsV~lwdl---~~~~~l~~~~gH~-----~~V~~V~-ws----------------------pd~~~L 684 (1496)
+.+.++++++.|++|++||+ .++++...+.+|. ++|..+. |+ +++ ++
T Consensus 640 -~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~-~~ 717 (902)
T 2oaj_A 640 -YSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPG-IV 717 (902)
T ss_dssp -SEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCE-EE
T ss_pred -CCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCE-EE
T ss_conf -7633899995687399999955899868999667244078896479985866879736688789725577887773-99
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEEC
Q ss_conf 99974899988999889999899990899981778871112232164111343427707843433521101499578612
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 685 vtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh~a~~i~~~~~~~~~~~~~sg~i~~g~~~~s~~l~~i~~D~~ir~W~ 764 (1496)
++ +.+ ..+++|++.++++.+...+|...+..+.+.. ..... +.......++.++.|++++.|+
T Consensus 718 l~-~~~--------~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~---~~~~~-----~~~~~~~~l~~~~~~g~i~~~s 780 (902)
T 2oaj_A 718 LI-TGF--------DDIRLITLGKSKSTHKGFKYPLAATGLSYIS---TVEKN-----NDRKNLTVIITLEINGHLRVFT 780 (902)
T ss_dssp EE-ECS--------SEEEEECTTCCCEEEEECSSCEEEEEEEEEE---EECSS-----SCEEEEEEEEEEETTSEEEEEE
T ss_pred EE-EEC--------CCEEEEECCCCCCEEEECCCCEEEEEEEEEE---ECCCC-----CCCCCCEEEEEEECCCCEEEEE
T ss_conf 99-935--------4059996753351236725620144777887---01355-----5446736999992799599997
Q ss_pred CCCCCCCC
Q ss_conf 66433333
Q 000450 765 IQNDERGV 772 (1496)
Q Consensus 765 l~~~~~~~ 772 (1496)
+..++.-.
T Consensus 781 ~p~l~~~~ 788 (902)
T 2oaj_A 781 IPDFKEQM 788 (902)
T ss_dssp TTTCCEEE
T ss_pred CCCHHHHH
T ss_conf 85647784
Done!