BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000452
(1495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 151/226 (66%), Gaps = 3/226 (1%)
Query: 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675
+I + + F+W S PTL I + G VAV G VG GKSSLLS +L E+ K+ G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 676 TLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
+ + G+ AYV Q WIQ+ + +NILFG +++ Y +V+ AC+L DLEIL GD+T
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLLNSK 793
+GE+G+NLSGGQKQR+ +ARA+Y +ADIYLFDDP SAVDAH G H+F+ V+ G+L +K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 794 TVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
T + VTH + +LP D+++V+ GKI++ G Y +++ F E +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 23/244 (9%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1307
I +R+ +A P L GI+ + P +VG+ G GKS+L+ L ++
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD------- 56
Query: 1308 XXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLG 1364
+ ++ +PQ + ++R N+ LEE + +A C L
Sbjct: 57 ------KVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQA---CALL 107
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
++ +++ E G N S GQ+Q V L R + I + D+ ++VD I
Sbjct: 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 1425 QSL---RQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
+++ + + T I + H ++ + D+++++S G I E S ++LL + +F++ +
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFL 226
Query: 1482 AEYT 1485
Y
Sbjct: 227 RTYA 230
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 201 bits (510), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 220/953 (23%), Positives = 408/953 (42%), Gaps = 131/953 (13%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
I + + +F++ P L+ +NL+V G VA+ G+ G GKS+++S +L + G +
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE-MDRERYNAVLDACSLEK 723
+ G A V+Q P + + IE+NI GKE + RE A + EK
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
++ L G T+VG+RG LSGGQKQRI IARAL ++ I L D+ SA+DA + + +
Sbjct: 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-EGIVQ 594
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKI----------TQAGKYTDVINSGT 833
+ L +T + + H++ + ADL++ K+G++ Q G Y D++ + T
Sbjct: 595 QALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654
Query: 834 DFMELVDAHKQALSTLDSIEGRPLSEKGSANGE--------NDGTSATDGXXXXXXXXXX 885
F + VD+ + + ++ R SE + + N S+T G
Sbjct: 655 -FTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDE 713
Query: 886 QNDREDKVAEPQ-RQLVQEEEREKGKV----------EFSVYWKYITAAYGGVLVPFILL 934
+ +R K A + +Q ++E +K + S++ TA GG + P +
Sbjct: 714 KEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSV 773
Query: 935 AQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIVFVALAFGSSFCILARSTLLATA 994
T F + A N PA D + G ++F+ LA C + + A
Sbjct: 774 FFTSFMNV-FAGN-------PA--DFLSQ--GHFWALMFLVLAAAQGICSFLMTFFMGIA 821
Query: 995 GYKTATLLFNKMHYCIFRAPMSFFDA--TPSGRIINRASTDQSAVDLSIPALIGSFAFSI 1052
L NK+ + + FFD+ SG+I R +TD + +I + ++
Sbjct: 822 SESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTL 881
Query: 1053 IRVLGVIGVMSLVAWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCK--APLIQHFA 1110
+ ++ IG+ WQ+ ++ I ++ + Q Y+ R + V A +
Sbjct: 882 VSMVAGIGLAFFYGWQMALLIIAILPIVAFGQ--YLRGRRFTGKNVKSASEFADSGKIAI 939
Query: 1111 ETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFR-----LDMLSNITF 1165
E + T+++ +E F + E +D + A ++ L + L +L+ +
Sbjct: 940 EAIENVRTVQALAREDTFYENFCEKLDIPHKEAIK-EAFIQGLSYGCASSVLYLLNTCAY 998
Query: 1166 AFSLVFLISIPKGF-------------IDPAIAGLAVTY-----------GLTLNNLQAM 1201
L +I+ P I + G A +Y G+ L+ +
Sbjct: 999 RMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKI 1058
Query: 1202 --LIWLACQMENKIISVERIFQYTCXXXXXXXXXXXXXXNHSWPSHGKID-LRDLQVRYA 1258
+ L+ E K + + IF+ ++P +I+ L+ L
Sbjct: 1059 SKIDSLSLAGEKKKLYGKVIFK---------------NVRFAYPERPEIEILKGLSFSVE 1103
Query: 1259 PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXX 1318
P L G S G GKST++ L R +
Sbjct: 1104 PGQTLALVGPS---------------GCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNP 1148
Query: 1319 XXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKL 1374
R++++I+ Q+P +F+ ++ N+ DP T Q+ EA + + + +
Sbjct: 1149 EHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGF 1207
Query: 1375 DSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDC 1434
+++V + G S GQ+Q + + R L++ KIL+LDEAT+++DT ++ ++Q++L +
Sbjct: 1208 ETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGR 1267
Query: 1435 TVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQR 1487
T I IAHR+ +V+++D + ++S+G I E + +L+ K + + + T++
Sbjct: 1268 TCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTEK 1320
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 119/241 (49%), Gaps = 4/241 (1%)
Query: 1246 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
G I + ++ Y P +P +LRG++ + +VG +G GKST+I L R +
Sbjct: 414 GDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 1304 XXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQ 1362
R ++++ Q+P +F T+ N+ +E T E++ A
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532
Query: 1363 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
++ ++ V + G S GQ+Q + + R L++ KIL+LDEAT+++D ++ +
Sbjct: 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGI 592
Query: 1423 IQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482
+QQ+L + T I IAHR++++ ++D+++ +G + E R L+ + + + A
Sbjct: 593 VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTA 652
Query: 1483 E 1483
+
Sbjct: 653 Q 653
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 126/202 (62%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 93
Query: 694 SGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753
G I++NI+FG D RY +V+ AC LE+D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 94 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 153
Query: 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLV 813
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L+
Sbjct: 154 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 213
Query: 814 IKDGKITQAGKYTDVINSGTDF 835
+ +G G ++++ N DF
Sbjct: 214 LHEGSSYFYGTFSELQNLQPDF 235
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + + G TG+GK++L+ + +EP+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ Y + + + CQL +++ K K + + E G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 141
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ I +S + + ++ T I + +
Sbjct: 142 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 201
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 202 MEHLKKADKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 126/202 (62%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 694 SGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753
G I++NI+FG D RY +V+ AC LE+D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 82 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 141
Query: 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLV 813
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L+
Sbjct: 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 201
Query: 814 IKDGKITQAGKYTDVINSGTDF 835
+ +G G ++++ N DF
Sbjct: 202 LHEGSSYFYGTFSELQNLQPDF 223
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + + G TG+GK++L+ + +EP+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ Y + + + CQL +++ K K + + E G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 129
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ I +S + + ++ T I + +
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 189
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 190 MEHLKKADKILILHEG 205
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 148/253 (58%), Gaps = 4/253 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISS--HNPTLKDINLK 642
T+V ++ + +F+ +E +L EK + ++ D + S+ S P LKDIN K
Sbjct: 3 TEVVMENVTAFW--EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI G I++NI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENII 120
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
G D RY +V+ AC LE+D+ + D V+GE GI LSGGQ+ RI +ARA+Y+DAD
Sbjct: 121 AGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 180
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ +G
Sbjct: 181 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 240
Query: 823 GKYTDVINSGTDF 835
G ++++ N DF
Sbjct: 241 GTFSELQNLQPDF 253
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ Y + + + CQL +++ K K + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ I +S + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 220 MEHLKKADKILILHEG 235
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 169 bits (429), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 151/253 (59%), Gaps = 4/253 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEK--QPRGSSETAIEIADGNFSWDISSHNPTLKDINLK 642
T + ++ + +F+ +E +L+EK Q G + + + + +FS NP LK+INL
Sbjct: 3 TGIIMENVTAFW--EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLN 60
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI+
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII 120
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
FG D RY +V+ AC L++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+DAD
Sbjct: 121 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 180
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ G
Sbjct: 181 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 240
Query: 823 GKYTDVINSGTDF 835
G ++++ + DF
Sbjct: 241 GTFSELQSLRPDF 253
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ Y + + + CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ + +S + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 150/253 (59%), Gaps = 4/253 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEK--QPRGSSETAIEIADGNFSWDISSHNPTLKDINLK 642
T + ++ + +F+ +E +L+EK Q G + + + +FS NP LK+INL
Sbjct: 3 TGIIMENVTAFW--EEGFGELLEKVQQSNGDRKHXSDENNVSFSHLCLVGNPVLKNINLN 60
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI+
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII 120
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
FG D RY +V+ AC L++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+DAD
Sbjct: 121 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 180
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ G
Sbjct: 181 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 240
Query: 823 GKYTDVINSGTDF 835
G ++++ + DF
Sbjct: 241 GTFSELQSLRPDF 253
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ Y + + + CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ + +S + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 167 bits (423), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 149/253 (58%), Gaps = 5/253 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISS--HNPTLKDINLK 642
T+V ++ + +F+ +E +L EK + ++ D + S+ S P LKDIN K
Sbjct: 3 TEVVMENVTAFW--EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q+ WI G I++NI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
G D RY +V+ AC LE+D+ + D V+GE GI LSGGQ+ RI +ARA+Y+DAD
Sbjct: 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ +G
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239
Query: 823 GKYTDVINSGTDF 835
G ++++ N DF
Sbjct: 240 GTFSELQNLRPDF 252
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q+ + GT++ N+ + Y + + + CQL +++ K K + + E G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ I +S + + ++ T I + +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 219 MEHLKKADKILILHEG 234
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 166 bits (420), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 150/253 (59%), Gaps = 4/253 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEK--QPRGSSETAIEIADGNFSWDISSHNPTLKDINLK 642
T + ++ + +F+ +E +L+EK Q G + + + + +FS NP LK+INL
Sbjct: 3 TGIIMENVTAFW--EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLN 60
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI+
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII 120
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
G D RY +V+ AC L++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+DAD
Sbjct: 121 SGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 180
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ G
Sbjct: 181 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 240
Query: 823 GKYTDVINSGTDF 835
G ++++ + DF
Sbjct: 241 GTFSELQSLRPDF 253
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ Y + + + CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ + +S + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 166 bits (420), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 150/253 (59%), Gaps = 4/253 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEK--QPRGSSETAIEIADGNFSWDISSHNPTLKDINLK 642
T + ++ + +F+ +E +L+EK Q G + + + + +FS NP LK+INL
Sbjct: 3 TGIIMENVTAFW--EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLN 60
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI+
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII 120
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
G D RY +V+ AC L++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+DAD
Sbjct: 121 RGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 180
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ G
Sbjct: 181 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 240
Query: 823 GKYTDVINSGTDF 835
G ++++ + DF
Sbjct: 241 GTFSELQSLRPDF 253
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ Y + + + CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ + +S + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 148/253 (58%), Gaps = 5/253 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWDISS--HNPTLKDINLK 642
T+V ++ + +F+ +E +L EK + ++ D + + S P LKDIN K
Sbjct: 3 TEVVMENVTAFW--EEGFGELFEKAKQNNNNRKTSNGDDSLFFSNFSLLGTPVLKDINFK 60
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q+ WI G I++NI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
G D RY +V+ AC LE+D+ + D V+GE GI LSGGQ+ RI +ARA+Y+DAD
Sbjct: 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ +G
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239
Query: 823 GKYTDVINSGTDF 835
G ++++ N DF
Sbjct: 240 GTFSELQNLRPDF 252
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q+ + GT++ N+ + Y + + + CQL +++ K K + + E G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ I +S + + ++ T I + +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 219 MEHLKKADKILILHEG 234
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 125/202 (61%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 694 SGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753
G I++NI+FG D RY +V+ AC LE+D+ + D V+GE GI LS GQ+ +I +
Sbjct: 112 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 171
Query: 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLV 813
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 814 IKDGKITQAGKYTDVINSGTDF 835
+ +G G ++++ N DF
Sbjct: 232 LHEGSSYFYGTFSELQNLQPDF 253
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ Y + + + CQL +++ K K + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQ+ + L R + K + +LD +D T+ I +S + + ++ T I + +
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 220 MEHLKKADKILILHEG 235
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 163 bits (412), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 125/202 (61%), Gaps = 1/202 (0%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 694 SGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753
G I++NI+ G D RY +V+ AC LE+D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 82 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 140
Query: 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLV 813
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L+
Sbjct: 141 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 200
Query: 814 IKDGKITQAGKYTDVINSGTDF 835
+ +G G ++++ N DF
Sbjct: 201 LHEGSSYFYGTFSELQNLQPDF 222
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 15/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + + G TG+GK++L+ + +EP+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ + Y + + + CQL +++ K K + + E G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 128
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ I +S + + ++ T I + +
Sbjct: 129 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 188
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 189 MEHLKKADKILILHEG 204
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 150/253 (59%), Gaps = 5/253 (1%)
Query: 585 TKVSLQRIASFFCLDELQPDLVEK--QPRGSSETAIEIADGNFSWDISSHNPTLKDINLK 642
T + ++ + +F+ +E +L+EK Q G + + + + +FS NP LK+INL
Sbjct: 3 TGIIMENVTAFW--EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLN 60
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI+
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII 120
Query: 703 FGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDAD 762
G D RY +V+ AC L++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+DAD
Sbjct: 121 -GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 179
Query: 763 IYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQA 822
+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L++ G
Sbjct: 180 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 239
Query: 823 GKYTDVINSGTDF 835
G ++++ + DF
Sbjct: 240 GTFSELQSLRPDF 252
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 15/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ + Y + + + CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 158
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQR + L R + K + +LD +D T+ + +S + + ++ T I + +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 218
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 219 MEHLRKADKILILHQG 234
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 1/202 (0%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 694 SGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQI 753
G I++NI+ G D RY +V+ AC LE+D+ + D V+GE GI LS GQ+ +I +
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 170
Query: 754 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLV 813
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT + VT ++E L AD +L+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 814 IKDGKITQAGKYTDVINSGTDF 835
+ +G G ++++ N DF
Sbjct: 231 LHEGSSYFYGTFSELQNLQPDF 252
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 15/196 (7%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
VL+ I+ + + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1324 RLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1383
R+S Q + GT++ N+ + Y + + + CQL +++ K K + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1384 NWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS-LRQHFSDCTVITIAHR 1442
S GQ+ + L R + K + +LD +D T+ I +S + + ++ T I + +
Sbjct: 159 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1443 ITSVIDSDMVLLLSHG 1458
+ + +D +L+L G
Sbjct: 219 MEHLKKADKILILHEG 234
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 1/236 (0%)
Query: 1242 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEP 1301
WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
Query: 1302 AAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKC 1361
R +IPQ +F GT R N+DP ++D++IW+ D+
Sbjct: 74 EGEIQIDGVSWDSITLEQW-RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1422 LIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+I+++L+Q F+DCTVI RI ++++ D L++ + +YDS +L + F
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 15/202 (7%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---------- 682
N L++I+ + G RV + G GSGKS+LLS L + G +++ G
Sbjct: 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQW 92
Query: 683 -KAY--VAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGER 739
KA+ + Q +I SG N+ + V D L +E V+ +
Sbjct: 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVT 799
G LS G KQ + +AR++ A I L D+P + +D T + + L TV+
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVILCE 211
Query: 800 HQVEFLPAADLVLVIKDGKITQ 821
++E + D LVI++ K+ Q
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQ 233
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 143/569 (25%), Positives = 247/569 (43%), Gaps = 76/569 (13%)
Query: 960 IKPRVTGSMLLIVFVALAFGSSFCILARSTLLATAGYKTATLLF---------------- 1003
+ P + G + +VFV F +L R L+ Y +LLF
Sbjct: 55 LSPYLIGKTIDVVFVP----RRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVF 110
Query: 1004 ---NKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIG 1060
++ + R P+ FFD TP G II+R D ++ + I F I+ + G +
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVI 170
Query: 1061 VMSLVAWQVFIVFIPVIATCIWYQQ--------YYISSARELSRLVGVCKAPLIQHFAET 1112
+M V + +V + ++ + Q Y+ + R L +L G+ + E
Sbjct: 171 MMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIE--------ED 222
Query: 1113 VSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEW----LGFRLDMLSNITFAF- 1167
+SG T I+ F +E + ME D + V + L ++M++N+ FA
Sbjct: 223 ISGLTVIKLFTREEK----EMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALI 278
Query: 1168 -------SLVFLISIPKGFIDPAIAGLAVTYGLTLNNL--QAMLIWLACQMENKIISVER 1218
+L +I++ G I I G + + LN L Q +I +A S ER
Sbjct: 279 SGFGGWLALKDIITV--GTIATFI-GYSRQFTRPLNELSNQFNMIQMALA------SAER 329
Query: 1219 IFQYTCXXXXXXXXXXXXXXNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKT 1278
IF+ G+I+ +++ Y P VL+ I+ +K
Sbjct: 330 IFEILDLEEEKDDPDAVELRE----VRGEIEFKNVWFSYDKKKP-VLKDITFHIKPGQKV 384
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGT 1338
+VG TGSGK+T++ L R + R+ + I+ QD ++F T
Sbjct: 385 ALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTT 444
Query: 1339 VRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1395
V+ N+ +P TDE+I EA ++ ++ +T+NGE+ S GQRQL+ +
Sbjct: 445 VKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAI 502
Query: 1396 GRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLL 1455
R L KIL+LDEAT++VDT T+ IQ ++ + T I IAHR+ ++ ++D++++L
Sbjct: 503 TRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVL 562
Query: 1456 SHGLIEEYDSPRKLLENKSSSFSQLVAEY 1484
G I E +L++ + + ++Y
Sbjct: 563 RDGEIVEMGKHDELIQKRGFYYELFTSQY 591
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 152/321 (47%), Gaps = 28/321 (8%)
Query: 537 FVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFF 596
F + FG + LK + G + + I R + +L +M S +RI
Sbjct: 275 FALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL 334
Query: 597 CLDELQ--PDLVE-KQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCG 653
L+E + PD VE ++ RG IE + FS+D P LKDI + G +VA+ G
Sbjct: 335 DLEEEKDDPDAVELREVRGE----IEFKNVWFSYD--KKKPVLKDITFHIKPGQKVALVG 388
Query: 654 TVGSGKSSLLSCILG--------------EVPKISGTLKLCGTKAYVAQSPWIQSGKIED 699
GSGK+++++ ++ ++ KI + L + V Q + S +++
Sbjct: 389 PTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS-SLRSSIGIVLQDTILFSTTVKE 447
Query: 700 NILFGKE--MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARAL 757
N+ +G D E A S + ++ L G +TV+ + G +LS GQ+Q + I RA
Sbjct: 448 NLKYGNPGATDEEIKEAAKLTHS-DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506
Query: 758 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDG 817
+ I + D+ S VD T + + + L+ KT + + H++ + ADL++V++DG
Sbjct: 507 LANPKILILDEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDG 565
Query: 818 KITQAGKYTDVINSGTDFMEL 838
+I + GK+ ++I + EL
Sbjct: 566 EIVEMGKHDELIQKRGFYYEL 586
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 130/531 (24%), Positives = 234/531 (44%), Gaps = 68/531 (12%)
Query: 987 RSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIG 1046
R L+ T+G + L + I R ++FFD T +G +INR S+D + + S+ +
Sbjct: 82 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 141
Query: 1047 SFAFSIIRVLGVIGVMSLV----AWQVFIVFIPVIATCIWYQQYYISSARELSRLVGVCK 1102
+ + I +M V A V V PV + Y +Y R+L+++
Sbjct: 142 DGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKVTQDSL 197
Query: 1103 APLIQHFAETVSGSTTIRSFDQE-------SRFIDTNMELM--DGYSRPTFHVAAAME-- 1151
A Q E + T+R+F +E + +D M+L + ++R F A +
Sbjct: 198 AQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGN 257
Query: 1152 -------WLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAM-LI 1203
+ G L +++T FL+ ++ +I GL+ Y + L A +
Sbjct: 258 LIVLSVLYKGGLLMGSAHMTVGELSSFLMY--AFWVGISIGGLSSFYSELMKGLGAGGRL 315
Query: 1204 WLACQMENK------IISVERIFQYTCXXXXXXXXXXXXXXNHSWPSHGKIDLRDLQVRY 1257
W + E K +I E+ FQ G ++ +++ Y
Sbjct: 316 WELLEREPKLPFNEGVILNEKSFQ------------------------GALEFKNVHFAY 351
Query: 1258 A--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXX 1315
P +P + + S + P T +VG +GSGKST++ L R+ +PA+
Sbjct: 352 PARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410
Query: 1316 XXXXXXRTRLSIIPQDPVMFEGTVRSNV-----DPLEEYTDEQIWEALDKCQLGDEVRKK 1370
R+++ + Q+P++F ++ N+ DP T E+I + +R
Sbjct: 411 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAVAFIRNF 469
Query: 1371 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQH 1430
++ V E G S GQ+Q + + R LLK KIL+LDEAT+++D + L+Q++L +
Sbjct: 470 PQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529
Query: 1431 FSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
TV+ IAHR++++ +++MV +L G I EY +LL + + +L+
Sbjct: 530 MDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580
Score = 120 bits (302), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 133/255 (52%), Gaps = 29/255 (11%)
Query: 604 DLVEKQPR-----------GSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVC 652
+L+E++P+ S + A+E + +F++ P +D +L + G A+
Sbjct: 317 ELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALV 376
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIED 699
G GSGKS++LS +L SGT+ L G V+Q P + S I +
Sbjct: 377 GPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436
Query: 700 NILFGKE----MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755
NI +G + + E V + + + G TVVGE+G+ LSGGQKQRI IAR
Sbjct: 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496
Query: 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIK 815
AL ++ I L D+ SA+DA +L +E L L++ +TVL + H++ + A++V V+
Sbjct: 497 ALLKNPKILLLDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLD 555
Query: 816 DGKITQAGKYTDVIN 830
GKIT+ GK+ ++++
Sbjct: 556 QGKITEYGKHEELLS 570
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 127/530 (23%), Positives = 232/530 (43%), Gaps = 66/530 (12%)
Query: 987 RSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIINRASTDQSAVDLSIPALIG 1046
R L+ T+G + L + I R ++FFD T +G +INR S+D + + S+ +
Sbjct: 113 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 172
Query: 1047 SFAFSIIRVLGVIGVMSLVAWQ----VFIVFIPVIATCIWYQQYYISSARELSRLVGVCK 1102
+ + I +M V+ V V PV + Y +Y R+L+++
Sbjct: 173 DGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKVTQDSL 228
Query: 1103 APLIQHFAETVSGSTTIRSFDQE-------SRFIDTNMELM--DGYSRPTFHVAAAME-- 1151
A Q E + T+R+F +E + +D M+L + ++R F A +
Sbjct: 229 AQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGN 288
Query: 1152 -------WLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAM-LI 1203
+ G L +++T FL+ ++ +I GL+ Y + L A +
Sbjct: 289 LIVLSVLYKGGLLMGSAHMTVGELSSFLMY--AFWVGISIGGLSSFYSELMKGLGAGGRL 346
Query: 1204 WLACQMENK------IISVERIFQYTCXXXXXXXXXXXXXXNHSWPSHGKIDLRDLQVRY 1257
W + E K +I E+ FQ G ++ +++ Y
Sbjct: 347 WELLEREPKLPFNEGVILNEKSFQ------------------------GALEFKNVHFAY 382
Query: 1258 A--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXX 1315
P +P + + S + P T +VG +GSGKST++ L R+ +PA+
Sbjct: 383 PARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 441
Query: 1316 XXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKE 1371
R+++ + Q+P++F ++ N+ D T E+I + +R
Sbjct: 442 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 501
Query: 1372 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF 1431
++ V E G S GQ+Q + + R LLK KIL+LDEAT+++D + L+Q++L +
Sbjct: 502 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 561
Query: 1432 SDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLV 1481
TV+ IAH ++++ +++MV +L G I EY +LL + + +L+
Sbjct: 562 DGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 611
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 132/255 (51%), Gaps = 29/255 (11%)
Query: 604 DLVEKQPR-----------GSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVC 652
+L+E++P+ S + A+E + +F++ P +D +L + G A+
Sbjct: 348 ELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALV 407
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIED 699
G GSGKS++LS +L SGT+ L G V+Q P + S I +
Sbjct: 408 GPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 467
Query: 700 NILFGKE----MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIAR 755
NI +G + + E V + + + G TVVGE+G+ LSGGQKQRI IAR
Sbjct: 468 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 527
Query: 756 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIK 815
AL ++ I L D+ SA+DA +L +E L L++ +TVL + H + + A++V V+
Sbjct: 528 ALLKNPKILLLDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLD 586
Query: 816 DGKITQAGKYTDVIN 830
GKIT+ GK+ ++++
Sbjct: 587 QGKITEYGKHEELLS 601
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 138/593 (23%), Positives = 259/593 (43%), Gaps = 55/593 (9%)
Query: 913 FSVYWKYITAAYGGVLVPFILLAQTLFQILQIASNYWIAWATPASKDIKPRVTGSMLLIV 972
F W YI G++V I L I A Y I+ P + + L I+
Sbjct: 13 FKRLWTYIRLYKAGLVVSTIALV-----INAAADTYMISLLKPLLDEGFGNAESNFLRIL 67
Query: 973 -FVALA---------FGSSFCILARSTLLATAGYKTATLLFNK-MHYCIFRAPMSFFDAT 1021
F+ L F SS+C+ S + + LFN MH P+ FFD
Sbjct: 68 PFMILGLMFVRGLSGFASSYCL---SWVSGNVVMQMRRRLFNHFMHM-----PVRFFDQE 119
Query: 1022 PSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQVFIVFIPVIATCI 1081
+G +++R + D V + + S ++G++ +M +WQ+ +V I V+A +
Sbjct: 120 STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLI-VVAPVV 178
Query: 1082 WYQQYYISSA-RELSRLVGVCKAPLIQHFAETVSGSTTIRSF---DQESRFIDTNMELMD 1137
+ ++S R++SR + + + + G + S+ + E + D ++ +
Sbjct: 179 AFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFD---KVSN 235
Query: 1138 GYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIP--KGFIDPAIAGLAVTYGLTL 1195
+ T + +A + M++++ F+++FL S+ + + P T+ +
Sbjct: 236 SMRQQTMKLVSAQSIADPVIQMIASLAL-FAVLFLASVDSIRAELTPG------TFTVVF 288
Query: 1196 NNLQAMLIWLACQMENKIISVERIFQY---TCXXXXXXXXXXXXXXNHSWPS---HGKID 1249
+ + ++ L + SV FQ C N + + +G++D
Sbjct: 289 SAMFGLMRPLKA-----LTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVD 343
Query: 1250 LRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXX 1309
++D+ Y L +S + P K +VGR+GSGKST+ R + +
Sbjct: 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403
Query: 1310 XXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEV 1367
R +++ Q+ +F T+ +N+ E YT EQI +A + + +
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFI 463
Query: 1368 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL 1427
LD+ + ENG + S GQRQ V + R LL+ +L+LDEAT+++DT ++ IQ +L
Sbjct: 464 ENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523
Query: 1428 RQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
+ + TV+ IAHR++++ +D +L++ G I E LL + +++QL
Sbjct: 524 DELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA-QDGAYAQL 575
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 139/288 (48%), Gaps = 26/288 (9%)
Query: 571 LIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETA-----IEIADGNF 625
L+ L A+ S+T + + + + F L DL ++ G E +++ D F
Sbjct: 294 LMRPLKALTSVTSEFQRGMAACQTLFGL----MDLETERDNGKYEAERVNGEVDVKDVTF 349
Query: 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-- 683
++ P L ++ + G VA+ G GSGKS++ + SG++ L G
Sbjct: 350 TYQ-GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408
Query: 684 -----------AYVAQSPWIQSGKIEDNILFGKEMD--RERYNAVLDACSLEKDLEILSF 730
A V+Q+ + + I +NI + E + RE+ + +E +
Sbjct: 409 DYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ 468
Query: 731 GDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 790
G TV+GE G +LSGGQ+QR+ IARAL +DA + + D+ SA+D + + L L
Sbjct: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQ 527
Query: 791 NSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMEL 838
+KTVL + H++ + AD +LV+ +G+I + G++ D++ + +L
Sbjct: 528 KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 1/229 (0%)
Query: 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAX 1304
G + +++ RY + VL G++ + ++G TGSGKSTL+ + R+++P
Sbjct: 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398
Query: 1305 XXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQL 1363
R +S +PQ+ V+F GT++ N+ E+ TD++I EA Q+
Sbjct: 399 RVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQI 458
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
D + DS+V G N+S GQ+Q + + R L+K+ K+L+LD+ T+SVD T+ I
Sbjct: 459 HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518
Query: 1424 QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472
L+++ CT I +I + + +D +L+L G + + + ++LLE+
Sbjct: 519 LDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 139/593 (23%), Positives = 260/593 (43%), Gaps = 66/593 (11%)
Query: 290 KLIKAMFRSVWKDVLLTALVAIVCTLATYVGPYLIDTLVQYLSGKRDFE---NEGYALVS 346
K + + W +L L +V + P L+ +V + DF G ++
Sbjct: 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLI 71
Query: 347 AFCVAKLVECLCQRFFVFRLEQLGIRLRAALIAMIYNKGLKLS-SQAKQGNTSGEIINFM 405
+ + C F + + G LR L + K L S S + +TS +I +
Sbjct: 72 VALIGAVGGIGCTVFASYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSS-LITRL 126
Query: 406 TVDAERVAELSWY-----IHDPWLFLFEVALSFLILYKSLGIASVAAFFGTVIFMLVNVP 460
T D ++ L + P LF+ + ++ I K ++SV F I +L V
Sbjct: 127 TNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK---LSSVLIFLIPPIVLLF-VW 182
Query: 461 LSTVQEKFQNELMKSKDERMKATSEIL---RNMRILKLQGWELKFLSKTID-LRKSESGW 516
L+ ++ +S DE + E L R +R + + +E + K + LR+S
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISA 242
Query: 517 LKRCLYTSSITSFVFWCAPTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQIL--IYK 574
++ ++ F+F ++V+ FG ++ +E G +++ T L+QI+ +
Sbjct: 243 FSLIVF--ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAY--TNYLMQIMFSLMM 298
Query: 575 LPAIISMTIQTKVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADGNFSWD------ 628
+ I++ ++ S +R+ L+E +P + E + A+ +G+ S++
Sbjct: 299 IGNILNFIVRASASAKRVLE--VLNE-KPAIEE----ADNALALPNVEGSVSFENVEFRY 351
Query: 629 ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG----------TLK 678
+ +P L +N V G VAV G GSGKS+L++ I + G T+K
Sbjct: 352 FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411
Query: 679 LCGTKAYVAQSPW---IQSGKIEDNILFGKEMDRERYNAVLDACSLEK--DLEI-LSFGD 732
L + +++ P + SG I++N+ +G+E + + +++A + + D I L G
Sbjct: 412 LKDLRGHISAVPQETVLFSGTIKENLKWGREDATD--DEIVEAAKIAQIHDFIISLPEGY 469
Query: 733 QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--- 789
+ V G N SGGQKQR+ IARAL + + + DD S+VD T K +L GL
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE----KRILDGLKRY 525
Query: 790 LNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAH 842
T +T ++ AD +LV+ +GK+ G + +++ + E+ ++
Sbjct: 526 TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQ 578
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 2/230 (0%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXX 1305
G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R +
Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGE 399
Query: 1306 XXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQL 1363
R +++++ Q+ +F TV +N+ E+Y+ EQI EA
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1424 QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENK 1473
Q +L + + T + IAHR++++ +D ++++ G+I E + LLE++
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR 569
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 152/325 (46%), Gaps = 45/325 (13%)
Query: 528 SFVFWCA--PTFVSVITFGTCILLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQT 585
+FV + A P+ + +T GT ++ F + L+ L ++ ++ Q
Sbjct: 264 AFVLYAASFPSVMDSLTAGTITVV---------------FSSMIALMRPLKSLTNVNAQF 308
Query: 586 KVSLQRIASFFCLDELQPDLVEKQPRGSSETAIEIADG-----NFSWDISSHN-PTLKDI 639
+ + + F + L +Q + + IE A G N ++ + P L++I
Sbjct: 309 QRGMAACQTLFTI------LDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNI 362
Query: 640 NLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISGTLK------LCGTKAYV 686
NLK+ G VA+ G GSGKS++ S I GE+ L+ L A V
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALV 422
Query: 687 AQSPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLS 744
+Q+ + + + +NI + + + RE+ + + G TV+GE G+ LS
Sbjct: 423 SQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 745 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEF 804
GGQ+QRI IARAL +D+ I + D+ SA+D + + L L ++T L + H++
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLST 541
Query: 805 LPAADLVLVIKDGKITQAGKYTDVI 829
+ AD ++V++DG I + G + D++
Sbjct: 542 IEKADEIVVVEDGVIVERGTHNDLL 566
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 969 LLIVFVALAFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDATPSGRIIN 1028
L+I+ ++ SS+CI + K + ++ + P+SFFD +G +++
Sbjct: 74 LMILRGITSYVSSYCI-------SWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLS 126
Query: 1029 RASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQ---VFIVFIPVIATCI 1081
R + D V S + + ++G+ +M +WQ + IV P+++ I
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAI 182
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 129/234 (55%), Gaps = 4/234 (1%)
Query: 1259 PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXX 1318
P +P VL+G+S + +VG +G GKST++Q L R +P A
Sbjct: 1044 PSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 1319 XXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLD 1375
R +L I+ Q+P++F+ ++ N+ D + E+I A + + + K +
Sbjct: 1103 QWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYN 1162
Query: 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCT 1435
++V + G S GQ+Q + + R L+++ IL+LDEAT+++DT ++ ++Q++L + T
Sbjct: 1163 TRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRT 1222
Query: 1436 VITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSS 1489
I IAHR++++ ++D+++++ +G ++E+ + ++LL K FS + + + S
Sbjct: 1223 CIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 121/235 (51%), Gaps = 2/235 (0%)
Query: 1245 HGKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
G ++ +++ Y +L+G++ + +VG +G GKST +Q + R+ +P
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 1304 XXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQ 1362
R + ++ Q+PV+F T+ N+ E+ T ++I +A+ +
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 1363 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
D + K + D+ V E G S GQ+Q + + R L++ KIL+LDEAT+++DT ++ +
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1423 IQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+Q +L + T I IAHR+++V ++D++ G+I E + +L+ K F
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF 619
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 126/264 (47%), Gaps = 31/264 (11%)
Query: 601 LQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKS 660
L+P+++E ++ + F++ P L+ ++L+V G +A+ G+ G GKS
Sbjct: 1022 LKPNMLEGN--------VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKS 1073
Query: 661 SLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEM 707
+++ + ++G++ L G + V+Q P + I +NI +G
Sbjct: 1074 TVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS 1133
Query: 708 DRERYNAVLDACSLEKDLEILSFGD------QTVVGERGINLSGGQKQRIQIARALYQDA 761
Y ++ A K+ I F D T VG++G LSGGQKQRI IARAL +
Sbjct: 1134 RVVSYEEIVRAA---KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP 1190
Query: 762 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQ 821
I L D+ SA+D + + +E L +T + + H++ + ADL++VI++GK+ +
Sbjct: 1191 HILLLDEATSALDTES-EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 822 AGKYTDVINSGTDFMELVDAHKQA 845
G + ++ + +V A
Sbjct: 1250 HGTHQQLLAQKGIYFSMVSVQAGA 1273
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 28/272 (10%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+E + +FS+ LK +NLKV G VA+ G G GKS+ + + + G +
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE---MDRERYNAVLDACSL 721
+ G V+Q P + + I +NI +G+E MD E AV +A +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMD-EIEKAVKEANAY 506
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+ +++ D T+VGERG LSGGQKQRI IARAL ++ I L D+ SA+D + + +
Sbjct: 507 DFIMKLPHQFD-TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA-V 564
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV-- 839
+ L +T + + H++ + AD++ G I + G + +++ + +LV
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMT 624
Query: 840 -------DAHKQALSTLDSIEGRPLSEKGSAN 864
+ +A + D I+ +S K S +
Sbjct: 625 QTAGNEIELGNEACKSKDEIDNLDMSSKDSGS 656
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 129/234 (55%), Gaps = 4/234 (1%)
Query: 1259 PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXX 1318
P +P VL+G+S + +VG +G GKST++Q L R +P A
Sbjct: 1044 PSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 1319 XXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLD 1375
R +L I+ Q+P++F+ ++ N+ D + E+I A + + + K +
Sbjct: 1103 QWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYN 1162
Query: 1376 SKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCT 1435
++V + G S GQ+Q + + R L+++ IL+LDEAT+++DT ++ ++Q++L + T
Sbjct: 1163 TRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRT 1222
Query: 1436 VITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSS 1489
I IAHR++++ ++D+++++ +G ++E+ + ++LL K FS + + + S
Sbjct: 1223 CIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 121/235 (51%), Gaps = 2/235 (0%)
Query: 1245 HGKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
G ++ +++ Y +L+G++ + +VG +G GKST +Q + R+ +P
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 1304 XXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQ 1362
R + ++ Q+PV+F T+ N+ E+ T ++I +A+ +
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 1363 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNL 1422
D + K + D+ V E G S GQ+Q + + R L++ KIL+LDEAT+++DT ++ +
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1423 IQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+Q +L + T I IAHR+++V ++D++ G+I E + +L+ K F
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF 619
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 126/264 (47%), Gaps = 31/264 (11%)
Query: 601 LQPDLVEKQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKS 660
L+P+++E ++ + F++ P L+ ++L+V G +A+ G+ G GKS
Sbjct: 1022 LKPNMLEGN--------VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKS 1073
Query: 661 SLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEM 707
+++ + ++G++ L G + V+Q P + I +NI +G
Sbjct: 1074 TVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS 1133
Query: 708 DRERYNAVLDACSLEKDLEILSFGD------QTVVGERGINLSGGQKQRIQIARALYQDA 761
Y ++ A K+ I F D T VG++G LSGGQKQRI IARAL +
Sbjct: 1134 RVVSYEEIVRAA---KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP 1190
Query: 762 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQ 821
I L D+ SA+D + + +E L +T + + H++ + ADL++VI++GK+ +
Sbjct: 1191 HILLLDEATSALDTES-EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 822 AGKYTDVINSGTDFMELVDAHKQA 845
G + ++ + +V A
Sbjct: 1250 HGTHQQLLAQKGIYFSMVSVQAGA 1273
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 28/272 (10%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+E + +FS+ LK +NLKV G VA+ G G GKS+ + + + G +
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE---MDRERYNAVLDACSL 721
+ G V+Q P + + I +NI +G+E MD E AV +A +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMD-EIEKAVKEANAY 506
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+ +++ D T+VGERG LSGGQKQRI IARAL ++ I L D+ SA+D + + +
Sbjct: 507 DFIMKLPHQFD-TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA-V 564
Query: 782 FKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV-- 839
+ L +T + + H++ + AD++ G I + G + +++ + +LV
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMT 624
Query: 840 -------DAHKQALSTLDSIEGRPLSEKGSAN 864
+ +A + D I+ +S K S +
Sbjct: 625 QTAGNEIELGNEACKSKDEIDNLDMSSKDSGS 656
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 2/227 (0%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXX 1305
G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R +
Sbjct: 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399
Query: 1306 XXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQL 1363
R +++++ Q+ +F TV +N+ EEY+ EQI EA
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 459
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ I
Sbjct: 460 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1424 QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470
Q +L + + T + IAHR++++ +D ++++ G+I E + +LL
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 16/211 (7%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISGTLK------LC 680
P L++INLK+ G VA+ G GSGKS++ S I G + L+ L
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 681 GTKAYVAQSPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLEKDLEILSFGDQTVVGE 738
A V+Q+ + + + +NI + + E RE+ + + G T++GE
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYV 798
G+ LSGGQ+QRI IARAL +D+ I + D+ SA+D + + L L ++T L +
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVI 535
Query: 799 THQVEFLPAADLVLVIKDGKITQAGKYTDVI 829
H++ + AD ++V++DG I + G +++++
Sbjct: 536 AHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 913 FSVYWKYITAAYGGVLVPFILLAQTLFQILQIASN-YWIAWATPASKDIKPRVTGSMLL- 970
F W I G++V I L IL AS+ + ++ P D + S+LL
Sbjct: 13 FRRLWPTIAPFKAGLIVAGIAL------ILNAASDTFMLSLLKPLLDDGFGKTDRSVLLW 66
Query: 971 --IVFVAL-------AFGSSFCILARSTLLATAGYKTATLLFNKMHYCIFRAPMSFFDAT 1021
+V + L ++ SS+CI + K + ++ + P++FFD
Sbjct: 67 MPLVVIGLMILRGITSYISSYCI-------SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ 119
Query: 1022 PSGRIINRASTDQSAVDLSIPALIGSFAFSIIRVLGVIGVMSLVAWQ---VFIVFIPVIA 1078
+G +++R + D V S + + ++G+ +M +WQ + +V P+++
Sbjct: 120 STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVS 179
Query: 1079 TCI 1081
I
Sbjct: 180 IAI 182
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 2/199 (1%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRT 1323
+LR IS G +G GKST+ L R +P A R+
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 1324 RLSIIPQDPVMFEGTVRSNVD-PLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1381
++ + QD + GT+R N+ LE +YTDE +W+ LD V +L+++V E
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 1382 GENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
G S GQRQ + + R L+ KILMLDEATAS+D+ +++++Q++L T + IAH
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
Query: 1442 RITSVIDSDMVLLLSHGLI 1460
R+++++D+D + + G I
Sbjct: 197 RLSTIVDADKIYFIEKGQI 215
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 18/221 (8%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
+F++D S L+DI+ + +A G G GKS++ S + +G + + G
Sbjct: 8 DFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 684 -------------AYVAQSPWIQSGKIEDNILFGKEMD--RERYNAVLDACSLEKDLEIL 728
+V+Q I +G I +N+ +G E D E VLD +E +
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
T VGERG+ +SGGQ+QR+ IARA ++ I + D+ +++D+ + S + ++ L
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES-MVQKALDS 184
Query: 789 LLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVI 829
L+ +T L + H++ + AD + I+ G+IT +GK+ +++
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 110 bits (275), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 119/478 (24%), Positives = 213/478 (44%), Gaps = 43/478 (8%)
Query: 381 IYNKGLKLSSQAKQGNTSGEIINFMTVDAERVAELSWY-IHDPWLFLFEVALSFLILYKS 439
+YN LS++ N G++I+ + D E+ + + + WL + ++ I++
Sbjct: 100 LYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159
Query: 440 LGIASVAAFFGTVIFMLVNVPLSTVQEKFQNELMKSKDERMKATSEI-------LRNMRI 492
++AA F F ++ V + F L K ER +A +E+ ++ + +
Sbjct: 160 DVKLTLAALF-IFPFYILTVYV------FFGRLRKLTRERSQALAEVQGFLHERVQGISV 212
Query: 493 LKLQGWELKFLSKTIDLRKSESGWLKRCLYTSSITSFVFWCAPTF-----VSVITFGTCI 547
+K E ++ + K + +L R L + ++ F T + VI G +
Sbjct: 213 VKSFAIED---NEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYL 269
Query: 548 LLKVPLESGKVLSAIATFRLLQILIYKLPAIISMTIQTKVSLQRIASFFCLDELQPDLVE 607
+ + G + + + LL + +L A + Q+ S+ R+ D + V
Sbjct: 270 AISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVG 329
Query: 608 KQPRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
QP + I+I +F ++ + P LKDINL + G VA G G GKS+L++ I
Sbjct: 330 AQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
Query: 668 GEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEMDRERYNA 714
SG + + G V Q + S +++NIL G+ +
Sbjct: 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDE--E 446
Query: 715 VLDACSLEKDLEI---LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 771
V++A + + L G T VGERG+ LSGGQKQR+ IAR + I + D+ S
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 506
Query: 772 AVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVI 829
A+D + S + +E L L +T L V H++ + AD ++VI++G I + G + ++I
Sbjct: 507 ALDLESES-IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 5/234 (2%)
Query: 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAX 1304
G+ID+ + +Y + +L+ I+ + + VG +G GKSTLI + R + +
Sbjct: 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396
Query: 1305 XXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKC 1361
R ++ ++ QD ++F TV+ N+ P TDE++ EA
Sbjct: 397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA--TDEEVVEAAKMA 454
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
D + D++V E G S GQ+Q + + R+ L IL+LDEAT+++D +++
Sbjct: 455 NAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES 514
Query: 1422 LIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSS 1475
+IQ++L D T + +AHR++++ +D ++++ +G I E + R+L+ + +
Sbjct: 515 IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 130/263 (49%), Gaps = 18/263 (6%)
Query: 1241 SWPSHGK-----IDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQT 1294
S SH K I+ D+ Y L+ I+ P +VG TGSGKST+ +
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 1295 LFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDE 1352
L+R + A R+ + I+PQD ++F T++ N+ L+ TDE
Sbjct: 66 LYRFYD-AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA-TDE 123
Query: 1353 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEAT 1412
++ +A QL D + K D+ V G S G+RQ + + R LLK KI++ DEAT
Sbjct: 124 EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT 183
Query: 1413 ASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472
+S+D+ T+ L Q+++ + T+I IAHR++++ ++ ++LL+ G I E + + LL
Sbjct: 184 SSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL-- 241
Query: 1473 KSSSFSQLVAEYTQRSSSSLAGN 1495
+L EY + + GN
Sbjct: 242 ------KLNGEYAEMWNMQSGGN 258
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 18/236 (7%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE +D NFS+ +++ TLK IN + G A+ G GSGKS++ + +L G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI-AKLLYRFYDAEGDI 76
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGK--EMDRERYNAVLDACSLE 722
K+ G V Q + + I+ NIL+GK D E A A L
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSA-QLY 135
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+E L T+VG +G+ LSGG++QRI IAR L +D I +FD+ S++D+ T +LF
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLF 194
Query: 783 KEVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMEL 838
++ + L ++T++ + H++ + +A+ ++++ GKI + G + D++ ++ E+
Sbjct: 195 QKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 119/237 (50%), Gaps = 1/237 (0%)
Query: 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAX 1304
H I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1305 XXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQL 1363
R ++ ++ QD V+ ++ N+ + E++ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1424 QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
+++ + TVI IAHR+++V ++D ++++ G I E ++LL S +S L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--Q 693
L +INL + G + + G GSGKS+L I +G + + G +A W+ Q
Sbjct: 21 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 694 SGKI-EDNILFGKE-----------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
G + +DN+L + M E+ + L G T+VGE+G
Sbjct: 81 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 140
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQ 801
LSGGQ+QRI IARAL + I +FD+ SA+D + H+ + + +TV+ + H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 199
Query: 802 VEFLPAADLVLVIKDGKITQAGKYTDVI 829
+ + AD ++V++ GKI + GK+ +++
Sbjct: 200 LSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 1/237 (0%)
Query: 1245 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAX 1304
H I R+++ RY P P +L I+ + + GIVGR GSGKSTL + + R P
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1305 XXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQL 1363
R ++ ++ QD V+ ++ N+ + E++ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1364 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1424 QQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
+++ + TVI IAHR+++V ++D ++++ G I E ++LL S +S L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--Q 693
L +INL + G + + G GSGKS+L I +G + + G +A W+ Q
Sbjct: 21 LDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 694 SGKI-EDNILFGKE-----------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
G + +DN+L + M E+ + L G T+VGE+G
Sbjct: 81 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 140
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQ 801
LSGGQ+QRI IARAL + I +FD+ SA+D + H+ + + +TV+ + H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 199
Query: 802 VEFLPAADLVLVIKDGKITQAGKYTDVI 829
+ + AD ++V++ GKI + GK+ +++
Sbjct: 200 LSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 1/234 (0%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1307
I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1308 XXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDE 1366
R ++ ++ QD V+ ++ N+ + E++ A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1427 LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
+ + TVI IAHR+++V ++D ++++ G I E ++LL S +S L
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--Q 693
L +INL + G + + G GSGKS+L I +G + + G +A W+ Q
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 694 SGKI-EDNILFGKE-----------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
G + +DN+L + M E+ + L G T+VGE+G
Sbjct: 79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 138
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQ 801
LSGGQ+QRI IARAL + I +FD+ SA+D + H+ + + +TV+ + H+
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 197
Query: 802 VEFLPAADLVLVIKDGKITQAGKYTDVI 829
+ + AD ++V++ GKI + GK+ +++
Sbjct: 198 LSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 1/234 (0%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1307
I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1308 XXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDE 1366
R ++ ++ QD V+ ++ N+ + E++ A D
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I ++
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 1427 LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
+ + TVI IAHR+++V ++D ++++ G I E ++LL S +S L
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--Q 693
L +INL + G + + G GSGKS+L I +G + + G +A W+ Q
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 694 SGKI-EDNILFGKE-----------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
G + +DN+L + M E+ + L G T+VGE+G
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQ 801
LSGGQ+QRI IARAL + I +FD+ SA+D + H+ + + +TV+ + H+
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 203
Query: 802 VEFLPAADLVLVIKDGKITQAGKYTDVI 829
+ + AD ++V++ GKI + GK+ +++
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 1/234 (0%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1307
I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1308 XXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDE 1366
R ++ ++ QD V+ ++ N+ + E++ A D
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426
+ + ++ V E G S GQRQ + + R L+ KIL+ D+AT+++D ++++I ++
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 1427 LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
+ + TVI IAHR+++V ++D ++++ G I E ++LL S +S L
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--Q 693
L +INL + G + + G GSGKS+L I +G + + G +A W+ Q
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 694 SGKI-EDNILFGKE-----------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
G + +DN+L + M E+ + L G T+VGE+G
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQ 801
LSGGQ+QRI IARAL + I +FD SA+D + H+ + + +TV+ + H+
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDQATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 203
Query: 802 VEFLPAADLVLVIKDGKITQAGKYTDVI 829
+ + AD ++V++ GKI + GK+ +++
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 1/234 (0%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1307
I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1308 XXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDE 1366
R ++ ++ QD V+ ++ N+ + E++ A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1427 LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
+ + TVI IA R+++V ++D ++++ G I E ++LL S +S L
Sbjct: 182 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--Q 693
L +INL + G + + G GSGKS+L I +G + + G +A W+ Q
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 694 SGKI-EDNILFGKE-----------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
G + +DN+L + M E+ + L G T+VGE+G
Sbjct: 79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 138
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQ 801
LSGGQ+QRI IARAL + I +FD+ SA+D + H+ + + +TV+ + +
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAAR 197
Query: 802 VEFLPAADLVLVIKDGKITQAGKYTDVI 829
+ + AD ++V++ GKI + GK+ +++
Sbjct: 198 LSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 1/234 (0%)
Query: 1248 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1307
I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1308 XXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDE 1366
R ++ ++ QD V+ ++ N+ + E++ A D
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 1367 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS 1426
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I ++
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 1427 LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQL 1480
+ + TVI IA R+++V ++D ++++ G I E ++LL S +S L
Sbjct: 188 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--Q 693
L +INL + G + + G GSGKS+L I +G + + G +A W+ Q
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 694 SGKI-EDNILFGKE-----------MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
G + +DN+L + M E+ + L G T+VGE+G
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQ 801
LSGGQ+QRI IARAL + I +FD+ SA+D + H+ + + +TV+ + +
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAAR 203
Query: 802 VEFLPAADLVLVIKDGKITQAGKYTDVI 829
+ + AD ++V++ GKI + GK+ +++
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXX 1305
G+I+ ++ YA L+ +S T + +VG +G+GKST+++ LFR + ++
Sbjct: 52 GRIEFENVHFSYADGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC 110
Query: 1306 XXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYT-----DEQIWEALDK 1360
R+ + ++PQD V+F T+ N+ Y ++++ A
Sbjct: 111 IRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNI----RYGRVTAGNDEVEAAAQA 166
Query: 1361 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
+ D + ++V E G S G++Q V + R +LK I++LDEAT+++DT+ +
Sbjct: 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 1421 NLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLL 1470
IQ SL + ++ T I +AHR+++V+++D +L++ G I E LL
Sbjct: 227 RAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 17/235 (7%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
IE + +FS+ + TL+D++ V G +A+ G G+GKS++L + SG +
Sbjct: 54 IEFENVHFSY--ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
Query: 678 KLCG------TKA-------YVAQSPWIQSGKIEDNILFGK-EMDRERYNAVLDACSLEK 723
++ G T+A V Q + + I DNI +G+ + A A +
Sbjct: 112 RIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
+ G +T VGERG+ LSGG+KQR+ IAR + + I L D+ SA+D + +
Sbjct: 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT-SNERAIQ 230
Query: 784 EVLLGLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMEL 838
L + ++T + V H++ + AD +LVIKDG I + G++ +++ G + ++
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 33/229 (14%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGT 676
IEI + W N +L +++LKV G + G G+GK+ L I G VP SG
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGR 56
Query: 677 LKLCGTK-----------AYVAQS-PWIQSGKIEDNILFGKEMDR-ERYNAVLDACSLEK 723
+ L G A+V Q+ ++ N+ FG M + + VLD +
Sbjct: 57 ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA---R 113
Query: 724 DLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 783
DL+I D+ + LSGG++QR+ +ARAL + I L D+P SA+D T + +
Sbjct: 114 DLKIEHLLDRN-----PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 784 EVLLGLLNSK---TVLYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
+L +L+ K TVL++TH Q E AD + V+ DGK+ Q GK ++
Sbjct: 169 --MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 1373 KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS 1432
K++ + N S G++Q V L R L+ KIL+LDE +++D T Q++ R+ S
Sbjct: 116 KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT----QENAREMLS 171
Query: 1433 ------DCTVITIAHRITSV-IDSDMVLLLSHGLIEEYDSPRKLLE 1471
TV+ I H T I +D + ++ G + + P ++ E
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 7/232 (3%)
Query: 1246 GKIDLRDLQVRYAPHMPF-VLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAA 1303
G + +D+ Y H VL+G++ T +PG K T +VG GSGKST+ L + +P
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1304 XXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKC 1361
T+++ + Q+P++F + R N+ T E+I +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1362 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDN 1421
D + D++V E G S GQRQ V L R L+++ ++L+LD+AT+++D
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQL 193
Query: 1422 LIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
+Q+ L + ++ TV+ I H+++ + +L L G + E + +L+E
Sbjct: 194 RVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 20/241 (8%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
++ D +F++ + L+ + ++ G A+ G GSGKS++ + + G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFG--KEMDRERYNAVLDACSLE 722
L G A V Q P + +NI +G + E AV
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+ G T VGE G LSGGQ+Q + +ARAL + + + D SA+DA G+ L
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA--GNQLR 194
Query: 783 KEVLL---GLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
+ LL S+TVL +THQ+ A +L +K+G + + G + ++ G + +V
Sbjct: 195 VQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
Query: 840 D 840
+
Sbjct: 255 E 255
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 13/250 (5%)
Query: 1243 PSH--GKIDLRDLQVRYAPHMP--FVLRGISCTF-PGEKKTGIVGRTGSGKSTLIQTLFR 1297
P H G + +D+ Y P+ P VL+G++ T PGE T +VG GSGKST+ L
Sbjct: 8 PLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEV-TALVGPNGSGKSTVAALLQN 65
Query: 1298 IVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIW 1355
+ +P +++ + Q+P +F +++ N+ ++ T E+I
Sbjct: 66 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 125
Query: 1356 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASV 1415
A K + D++V E G S GQRQ V L R L+++ +L+LD+AT+++
Sbjct: 126 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 185
Query: 1416 DTATDNLIQQSLR---QHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLEN 1472
D + ++Q L + +S +V+ I ++ V +D +L L G I E + ++L+E
Sbjct: 186 DANSQLQVEQLLYESPERYSR-SVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 244
Query: 1473 KSSSFSQLVA 1482
K ++ + A
Sbjct: 245 KGCYWAMVQA 254
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 20/249 (8%)
Query: 615 ETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
E ++ D +F++ L+ + + G A+ G GSGKS++ + +
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 675 GTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFG--KEMDRERYNAVLDAC 719
G L L G A V Q P + +++NI +G ++ E A
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 131
Query: 720 SLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
+ L G T V E G LSGGQ+Q + +ARAL + + + DD SA+DA+ S
Sbjct: 132 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN--S 189
Query: 780 HLFKEVLL---GLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFM 836
L E LL S++VL +T + + AD +L ++ G I + G + ++ +
Sbjct: 190 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 249
Query: 837 ELVDAHKQA 845
+V A A
Sbjct: 250 AMVQAPADA 258
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 23/218 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------Y 685
LKD+N + G V G GSGK++LL + G + +G + L G+ A Y
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 686 VAQSPWIQ--SGKIEDNILFGKEMDRERYNAVLDACSLEKDLE-ILSF-GDQTVVGERGI 741
V Q+P Q +E+++ F E+ LD + K ++ +L G + +
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEI------MGLDESEMRKRIKKVLELVGLSGLAAADPL 139
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTH 800
NLSGGQKQR+ IA L +D D+P S +D + +F +VL L N K ++ VTH
Sbjct: 140 NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIF-QVLESLKNEGKGIILVTH 198
Query: 801 QVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMEL 838
++E+L D +L I +G I G + + + D +E+
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDVEI 236
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 41/232 (17%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXX 1306
+I+L + RY + +VL+ ++ F K +VG+ GSGK+TL++ L ++ A
Sbjct: 11 RIELNSVSFRY--NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIF 68
Query: 1307 XXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEA--------- 1357
L P DP + +R NV + + QI A
Sbjct: 69 ------------------LDGSPADPFL----LRKNVGYVFQNPSSQIIGATVEEDVAFS 106
Query: 1358 -----LDKCQLGDEVRK--KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDE 1410
LD+ ++ ++K + L + N S GQ+Q + + +L + + L LDE
Sbjct: 107 LEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDE 166
Query: 1411 ATASVDTATDNLIQQSLRQHFSDCT-VITIAHRITSVIDSDMVLLLSHGLIE 1461
+ +D + I Q L ++ +I + H + + D D +L +S+G I+
Sbjct: 167 PVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTID 218
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 36/221 (16%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG- 695
KDINL + G V G G GKS+LL I G SG L G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 696 -------------KIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
+ +N+ FG KE+ +R N V + L L+
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD--------- 128
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-LLGLLNSKT 794
+ LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L +T
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 795 VLYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDVINSGTD 834
++YVTH QVE + AD ++V+ G++ Q GK ++ + D
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTA--TDNLIQQSLRQHFSDCTVITIAH-R 1442
S GQRQ V +GR L+ + +LDE +++D A I+ S T+I + H +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1443 ITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ ++ +D +++L G + + P +L + F
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 36/221 (16%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG- 695
KDINL + G V G G GKS+LL I G SG L G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 696 -------------KIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
+ +N+ FG KE+ +R N V + L L+
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD--------- 128
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-LLGLLNSKT 794
+ LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L +T
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 795 VLYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDVINSGTD 834
++YVTH QVE + AD ++V+ G++ Q GK ++ + D
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTA--TDNLIQQSLRQHFSDCTVITIAH-R 1442
S GQRQ V +GR L+ + +LDE +++D A I+ S T+I + H +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1443 ITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ ++ +D +++L G + + P +L + F
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 9/233 (3%)
Query: 1246 GKIDLRDLQVRYAPHMPFV--LRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA 1302
G + +D+ Y P+ P V L+G++ T +PG K T +VG GSGKST+ L + +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1303 AXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDK 1360
T+++ + Q+P++F + R N+ T E+I +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1361 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
D + D++V E G ++GQRQ V L R L+++ ++L+LD AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1421 NLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
+Q+ L + ++ TV+ I +++ + +L L G + E + +L+E
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 20/241 (8%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
++ D +F++ + L+ + ++ G A+ G GSGKS++ + + G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFG--KEMDRERYNAVLDACSLE 722
L G A V Q P + +NI +G + E AV
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+ G T VGE G L+ GQ+Q + +ARAL + + + D+ SA+DA G+ L
Sbjct: 137 DFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA--GNQLR 194
Query: 783 KEVLL---GLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
+ LL S+TVL +T Q+ A +L +K+G + + G + ++ G + +V
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
Query: 840 D 840
+
Sbjct: 255 E 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 9/233 (3%)
Query: 1246 GKIDLRDLQVRYAPHMPFV--LRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPA 1302
G + +D+ Y P+ P V L+G++ T +PG K T +VG GSGKST+ L + +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1303 AXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDK 1360
T+++ + Q+P++F + R N+ T E+I +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1361 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD 1420
D + D++V E G S GQRQ V L R L+++ ++L+LD AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1421 NLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLE 1471
+Q+ L + ++ TV+ I +++ + +L L G + E + +L+E
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 20/241 (8%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
++ D +F++ + L+ + ++ G A+ G GSGKS++ + + G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFG--KEMDRERYNAVLDACSLE 722
L G A V Q P + +NI +G + E AV
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+ G T VGE G LSGGQ+Q + +ARAL + + + D+ SA+DA G+ L
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA--GNQLR 194
Query: 783 KEVLL---GLLNSKTVLYVTHQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELV 839
+ LL S+TVL +T Q+ A +L +K+G + + G + ++ G + +V
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
Query: 840 D 840
+
Sbjct: 255 E 255
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 100/221 (45%), Gaps = 36/221 (16%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG- 695
KDINL + G V G G GKS+LL I G SG L G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 696 -------------KIEDNILFG-------KEMDRERYNAVLDACSLEKDLEILSFGDQTV 735
+ +N+ FG KE+ +R N V + L L+
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD--------- 128
Query: 736 VGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-LLGLLNSKT 794
+ LSGGQ+QR+ I R L + ++L D P S +DA + E+ L +T
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 795 VLYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDVINSGTD 834
++YVTH QVE + AD ++V+ G++ Q GK ++ + D
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTA--TDNLIQQSLRQHFSDCTVITIAH-R 1442
S GQRQ V +GR L+ + +LD+ +++D A I+ S T+I + H +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1443 ITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ ++ +D +++L G + + P +L + F
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 70.5 bits (171), Expect = 7e-12, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 40/227 (17%)
Query: 623 GNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682
GNF+ L +INLK+ G +A+ G GSGKS+LL I G SG K+
Sbjct: 14 GNFT--------ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG--KIYFD 63
Query: 683 KAYVAQSP------------WI--QSGKIEDNILFGKEMDRE-RYNAVLDACSLEKDLEI 727
+ V + P W + NI F E+ + R + K L I
Sbjct: 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI 123
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL- 786
++ LSGGQ+QR+ IARAL ++ ++ L D+P S +DA + E+
Sbjct: 124 -----DKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR 178
Query: 787 ----LGLLNSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
LG+ T +YVTH Q E L AD + VI++G+I Q G +V
Sbjct: 179 LQKELGI----TTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 37.4 bits (85), Expect = 0.070, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMF-EG 1337
++G +GSGKSTL+ T+ I +P + + ++ Q+ ++
Sbjct: 33 ALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNWALYPHM 90
Query: 1338 TVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM--GQRQLVC 1394
TV N+ PLE + E +DK +VR+ L N W + GQ+Q V
Sbjct: 91 TVYKNIAFPLELRKAPR--EEIDK-----KVREVAKMLHIDKLLNRYPWQLSGGQQQRVA 143
Query: 1395 LGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAH-RITSVIDSDM 1451
+ R L+K ++L+LDE +++D ++ L+ Q T + + H + ++ +D
Sbjct: 144 IARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR 203
Query: 1452 VLLLSHGLIEEYDSP 1466
+ ++ G I + +P
Sbjct: 204 IAVIREGEILQVGTP 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 45/221 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL-KLCGTKAYVAQSPWIQS 694
LK++NL + G V++ G GSGKS++L+ I G L K + Y+ I++
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII--------GCLDKPTEGEVYIDN---IKT 69
Query: 695 GKIEDNILFGKEMDR-----ERYNAVLDACSLE---------------------KDLEIL 728
++D+ L D+ +++N + +LE + LE L
Sbjct: 70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL 129
Query: 729 SFGD--QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
+ + + LSGGQ+QR+ IARAL + I L D P A+D+ TG + + L
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ--L 187
Query: 787 LGLLNS---KTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
L LN KTV+ VTH + + ++ +KDG++ + K
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 45/221 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL-KLCGTKAYVAQSPWIQS 694
LK++NL + G V++ G GSGKS++L+ I G L K + Y+ I++
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII--------GCLDKPTEGEVYIDN---IKT 69
Query: 695 GKIEDNILFGKEMDR-----ERYNAVLDACSLE---------------------KDLEIL 728
++D+ L D+ +++N + +LE + LE L
Sbjct: 70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL 129
Query: 729 SFGD--QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
+ + + LSGGQ+QR+ IARAL + I L D P A+D+ TG + + L
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ--L 187
Query: 787 LGLLNS---KTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
L LN KTV+ VTH + + ++ +KDG++ + K
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 67.0 bits (162), Expect = 8e-11, Method: Composition-based stats.
Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 29/222 (13%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------- 683
+++ ++ ++ G V + G GSGK+++L I G G + + G +
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 684 AYVAQS-PWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742
V Q+ Q + DN+ FG R + +DA + E+L F R +
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDE-MDA----RVRELLRFMRLESYANRFPH 144
Query: 743 -LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLNSKTVL 796
LSGGQ+QR+ +ARAL + LFD+PF+A+D L V +G+ T +
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV----TSV 200
Query: 797 YVTH-QVEFLPAADLVLVIKDGKITQAGKYTDVINS-GTDFM 836
+VTH Q E L AD VLV+ +G + Q G +V GT F+
Sbjct: 201 FVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFV 242
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 16/220 (7%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTR 1324
+RG+S + G++G +GSGK+T+++ + + P +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRN 88
Query: 1325 LSIIPQDPVMFEG-TVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRK--KEGKLDSKVTE 1380
+ ++ Q+ +F+ TV NV L E + + K ++ VR+ + +L+S
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLRE-------KRVPKDEMDARVRELLRFMRLESYANR 141
Query: 1381 NGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD--CTVIT 1438
S GQ+Q V L R L R ++L+ DE A++DT ++ +RQ + T +
Sbjct: 142 FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201
Query: 1439 IAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ H ++ +D VL+L G +E++ +P ++ E + F
Sbjct: 202 VTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 45/221 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL-KLCGTKAYVAQSPWIQS 694
LK++NL + G V++ G GSGKS+ L+ I G L K + Y+ I++
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII--------GCLDKPTEGEVYIDN---IKT 69
Query: 695 GKIEDNILFGKEMDR-----ERYNAVLDACSLE---------------------KDLEIL 728
++D+ L D+ +++N + +LE + LE L
Sbjct: 70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECL 129
Query: 729 SFGD--QTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 786
+ + + LSGGQ+QR+ IARAL + I L D+P A+D+ TG + + L
Sbjct: 130 KXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQ--L 187
Query: 787 LGLLNS---KTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
L LN KTV+ VTH + + ++ +KDG++ + K
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL----KLCGTKAYVAQS 689
L ++N+ + +G R + G G+GK++ + I G +VP +G L +L + +
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 690 P-----------WIQSGKIE--DNILF---GKEMDRERYNAVLDACSLEKDLEILSFGDQ 733
P W + +NI F +M +E ++ + K L+I
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVA--KILDI-----H 131
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH---TGSHLFKEV--LLG 788
V+ LSGGQ+QR+ +ARAL +D + L D+PFS +DA + L KEV LG
Sbjct: 132 HVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 789 LLNSKTVLYVTHQ-VEFLPAADLVLVIKDGKITQAGKYTDVINS 831
+ T+L V+H + AD V V+ GK+ Q GK D+ ++
Sbjct: 192 V----TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRI 1443
S GQ+Q V L R L+K +L+LDE +++D + + +++ S T++ ++H
Sbjct: 142 SGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201
Query: 1444 TSVID-SDMVLLLSHGLIEEYDSPRKLLENKSS-SFSQLVAEYTQ 1486
+ +D V +L G + + P L +N S + L+ E +
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE 246
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 18/188 (9%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
N + + N + +N + G +AV G G GKS+LL +LG I G +++ +
Sbjct: 9 NLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSI 68
Query: 684 AYVAQ---SPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERG 740
+V Q SP+ S + D +L G+ + A + + ++ L + + T + +R
Sbjct: 69 GFVPQFFSSPFAYS--VLDIVLMGRSTHINTF-AKPKSHDYQVAMQALDYLNLTHLAKRE 125
Query: 741 I-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL------NSK 793
+LSGGQ+Q I IARA+ + + L D+P SA+D ++++L LL +
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN-----QDIVLSLLIDLAQSQNM 180
Query: 794 TVLYVTHQ 801
TV++ THQ
Sbjct: 181 TVVFTTHQ 188
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 1279 GIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGT 1338
++G+ G GKSTL+ L I P S++ D V+ +
Sbjct: 35 AVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVL--DIVLMGRS 92
Query: 1339 VRSNVDPLEEYTDEQI-WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1397
N + D Q+ +ALD L +++ L S GQRQL+ + R
Sbjct: 93 THINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSL-----------SGGQRQLILIAR 141
Query: 1398 VLLKRRKILMLDEATASVDTATDNLIQQSL--RQHFSDCTVITIAHRITSVI 1447
+ K+++LDE T+++D A +++ L + TV+ H+ V+
Sbjct: 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVV 193
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 39/224 (17%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL----KLCGTKAYVAQS 689
L ++N+ + +G R + G G+GK++ + I G +VP +G L +L + +
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 690 P-----------WIQSGKIE--DNILF---GKEMDRERYNAVLDACSLEKDLEILSFGDQ 733
P W + +NI F +M +E ++ + K L+I
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVA--KILDI-----H 131
Query: 734 TVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH---TGSHLFKEV--LLG 788
V+ LSG Q+QR+ +ARAL +D + L D+PFS +DA + L KEV LG
Sbjct: 132 HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 789 LLNSKTVLYVTHQ-VEFLPAADLVLVIKDGKITQAGKYTDVINS 831
+ T+L V+H + AD V V+ GK+ Q GK D+ ++
Sbjct: 192 V----TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRI 1443
S Q+Q V L R L+K +L+LDE +++D + + +++ S T++ ++H
Sbjct: 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201
Query: 1444 TSVID-SDMVLLLSHGLIEEYDSPRKLLENKSS-SFSQLVAEYTQ 1486
+ +D V +L G + + P L +N S + L+ E +
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE 246
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 36/229 (15%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
+ P L DI+L + G + + G G GK++LL C+ G SG + L G + +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 692 ----------IQSG------KIEDNILFG-------KEMDRERYNAVLDACSLEKDLEIL 728
+Q G + NI +G +R+R A+L+ + +
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE----- 130
Query: 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
+ G LSGGQ+QR +ARAL D ++ L D+PFSA+D + ++++
Sbjct: 131 ------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA 184
Query: 789 L-LNSKTVLYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDF 835
L N K+ ++V+H + E L AD + V+K G+I Q ++ D
Sbjct: 185 LRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADL 233
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 60.8 bits (146), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 732 DQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN 791
D+ G+ ++LSGGQ+QR+ IARAL + D+ LFD+P SA+D + + +
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202
Query: 792 SKTVLYVTHQVEFLP-AADLVLVIKDGKITQAG 823
KT++ VTH++ F + V+ + GKI + G
Sbjct: 203 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
Score = 37.4 bits (85), Expect = 0.060, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSD--CTVITIAH 1441
S GQ+Q V + R L +L+ DE T+++D L+ + LR Q ++ T++ + H
Sbjct: 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDP---ELVGEVLRIMQQLAEEGKTMVVVTH 211
Query: 1442 RITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSS 1475
+ S V+ L G IEE P ++ N S
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 60.1 bits (144), Expect = 1e-08, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 99/224 (44%), Gaps = 44/224 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-------LGEVPKISGTLKLCGTKAYVAQ 688
LK IN+ + G V V G GSGKS+ L C+ GE+ LK A+
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK--------AK 70
Query: 689 SPWIQSGKIEDNILFGKEMDRERYN-----AVLDACSLE--------------KDLEIL- 728
+ + E ++F +R+N VL+ +L K +E+L
Sbjct: 71 DTNLNKVREEVGMVF------QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLD 124
Query: 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
G + +LSGGQ QR+ IARAL + I LFD+P SA+D + V+
Sbjct: 125 KVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL-SVMKQ 183
Query: 789 LLNS-KTVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVIN 830
L N T++ VTH++ F D VL + G I + GK D+ +
Sbjct: 184 LANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 24/221 (10%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQ--TLFRIVEPAAXXXXXXXXXXXXXXXXXX 1321
VL+GI+ + ++G +GSGKST ++ L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1322 RTRLSIIPQDPVMF-EGTVRSNVD--PLE------EYTDEQIWEALDKCQLGDEVRKKEG 1372
R + ++ Q +F TV +N+ P++ E + + E LDK L D+
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 1373 KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS 1432
L S GQ Q V + R L KI++ DE T+++D + ++Q +
Sbjct: 138 SL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 1433 D-CTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471
+ T++ + H + + D VL + G I E P L +
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 60.1 bits (144), Expect = 1e-08, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 99/224 (44%), Gaps = 44/224 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-------LGEVPKISGTLKLCGTKAYVAQ 688
LK IN+ + G V V G GSGKS+ L C+ GE+ LK A+
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK--------AK 91
Query: 689 SPWIQSGKIEDNILFGKEMDRERYN-----AVLDACSLE--------------KDLEIL- 728
+ + E ++F +R+N VL+ +L K +E+L
Sbjct: 92 DTNLNKVREEVGMVF------QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLD 145
Query: 729 SFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 788
G + +LSGGQ QR+ IARAL + I LFD+P SA+D + V+
Sbjct: 146 KVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL-SVMKQ 204
Query: 789 LLNS-KTVLYVTHQVEFL-PAADLVLVIKDGKITQAGKYTDVIN 830
L N T++ VTH++ F D VL + G I + GK D+ +
Sbjct: 205 LANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 24/221 (10%)
Query: 1264 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQ--TLFRIVEPAAXXXXXXXXXXXXXXXXXX 1321
VL+GI+ + ++G +GSGKST ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1322 RTRLSIIPQDPVMF-EGTVRSNVD--PLE------EYTDEQIWEALDKCQLGDEVRKKEG 1372
R + ++ Q +F TV +N+ P++ E + + E LDK L D+
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 1373 KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS 1432
L S GQ Q V + R L KI++ DE T+++D + ++Q +
Sbjct: 159 SL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 1433 D-CTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLE 1471
+ T++ + H + + D VL + G I E P L +
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 29/215 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTK-AYVAQSPWIQ 693
L +++L V G V G G+GKS+L+ C+ L E P G++ + G + +++S +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 79
Query: 694 SGK-----------IEDNILFGK-----EMDRERYNAVLDACSLEKDLEILSFGDQTVVG 737
+ + + +FG E+D + V + + L ++ GD+
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT--ELLSLVGLGDKH--D 135
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK---T 794
NLSGGQKQR+ IARAL + + L D+ SA+D T + + LL +N + T
Sbjct: 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE--LLKDINRRLGLT 193
Query: 795 VLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828
+L +TH+++ + D V VI +G++ + ++V
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 25/229 (10%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQT---LFRIVEPAAXXXXXXXXXXXXXXXXXX 1321
L +S P + G++G +G+GKSTLI+ L R E +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1322 RTRLSIIPQD-PVMFEGTVRSNVD-PLE------EYTDEQIWEALDKCQLGDEVRKKEGK 1373
R ++ +I Q ++ TV NV PLE + ++ E L LGD K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 133
Query: 1374 LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHF 1431
DS + N S GQ+Q V + R L K+L+ DEAT+++D AT I + L+
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 1432 SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
T++ I H + V D V ++S+G + E D+ ++ + + +Q
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK---TVLYV 798
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E+ L K T +YV
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI--KKLQQKLKVTTIYV 199
Query: 799 TH-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
TH QVE + D + V+ G++ Q G T+V
Sbjct: 200 THDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ---QSLRQHFSDCTVITIAHR 1442
S GQRQ V + R ++ +L++DE +++D ++ + L+Q T+ +
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 203
Query: 1443 ITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ ++ D + +++ G + + SP ++ +S F
Sbjct: 204 VEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK---TVLYV 798
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E+ L K T +YV
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI--KKLQQKLKVTTIYV 198
Query: 799 TH-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
TH QVE + D + V+ G++ Q G T+V
Sbjct: 199 THDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ---QSLRQHFSDCTVITIAHR 1442
S GQRQ V + R ++ +L++DE +++D ++ + L+Q T+ +
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202
Query: 1443 ITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ ++ D + +++ G + + SP ++ +S F
Sbjct: 203 VEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAY------- 685
L++++L + G + V G GSGKS+LL + G + SG + G K Y
Sbjct: 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81
Query: 686 -VAQSPWIQ--SGKIEDNILFGKEM---DRERYNAVLDACSLEKDLEILSFGDQTVVGER 739
Q P Q + ++ D + F + DR+ V A L+ SF D+
Sbjct: 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEF-VGLDFDSFKDRV----- 135
Query: 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVT 799
LSGG+K+R+ IA + + DI + D+P +D + L + V KTV+ ++
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 800 HQVE-FLPAADLVLVIKDGK 818
H +E + D V+V++ GK
Sbjct: 196 HDIETVINHVDRVVVLEKGK 215
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAA 1303
+ G TGSGKSTL+Q + ++EP +
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPTS 61
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAY------- 685
L++++L + G + V G GSGKS+LL + G + SG + G K Y
Sbjct: 24 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 83
Query: 686 -VAQSPWIQ--SGKIEDNILFGKEM---DRERYNAVLDACSLEKDLEILSFGDQTVVGER 739
Q P Q + ++ D + F + DR+ V A L+ SF D+
Sbjct: 84 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEF-VGLDFDSFKDRV----- 137
Query: 740 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVT 799
LSGG+K+R+ IA + + DI + D+P +D + L + V KTV+ ++
Sbjct: 138 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 800 HQVE-FLPAADLVLVIKDGK 818
H +E + D V+V++ GK
Sbjct: 198 HDIETVINHVDRVVVLEKGK 217
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAA 1303
+ G TGSGKSTL+Q + ++EP +
Sbjct: 40 VAGNTGSGKSTLLQIVAGLIEPTS 63
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 29/215 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTK-AYVAQSPWIQ 693
L +++L V G V G G+GKS+L+ C+ L E P G++ + G + +++S +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 694 SGK-----------IEDNILFGK-----EMDRERYNAVLDACSLEKDLEILSFGDQTVVG 737
+ + + +FG E+D + V + + L ++ GD+
Sbjct: 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT--ELLSLVGLGDKH--D 158
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK---T 794
NLSGGQKQR+ IARAL + + L D SA+D T + + LL +N + T
Sbjct: 159 SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLT 216
Query: 795 VLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828
+L +TH+++ + D V VI +G++ + ++V
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 25/229 (10%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQT---LFRIVEPAAXXXXXXXXXXXXXXXXXX 1321
L +S P + G++G +G+GKSTLI+ L R E +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1322 RTRLSIIPQD-PVMFEGTVRSNVD-PLE------EYTDEQIWEALDKCQLGDEVRKKEGK 1373
R ++ +I Q ++ TV NV PLE + ++ E L LGD K
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 156
Query: 1374 LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHF 1431
DS + N S GQ+Q V + R L K+L+ D+AT+++D AT I + L+
Sbjct: 157 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1432 SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
T++ I H + V D V ++S+G + E D+ ++ + + +Q
Sbjct: 213 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 14/97 (14%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG-------SHLFKEVLLGLLNSKTV 795
LSGGQ+QR+ +ARAL + + LFD+P S +DA+ HL +E LG+ T
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGI----TS 187
Query: 796 LYVTH-QVEFLPAADLVLVIKDGKITQAGKYTDVINS 831
+YVTH Q E + A + V GK+ Q G +V +S
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 1374 LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ---QSLRQH 1430
LD K T+ S GQ+Q V L R L+K+ K+L+ DE +++D +++ + L+Q
Sbjct: 127 LDRKPTQ----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182
Query: 1431 FSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+V + ++ + + + + G + +Y +P ++ ++ + F
Sbjct: 183 LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 29/215 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTK-AYVAQSPWIQ 693
L +++L V G V G G+GKS+L+ C+ L E P G++ + G + +++S +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 694 SGK-----------IEDNILFGK-----EMDRERYNAVLDACSLEKDLEILSFGDQTVVG 737
+ + + +FG E+D + V + + L ++ GD+
Sbjct: 103 ARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEV--KRRVTELLSLVGLGDKH--D 158
Query: 738 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK---T 794
NLSGGQKQR+ IARAL + + L D SA+D T + + LL +N + T
Sbjct: 159 SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLT 216
Query: 795 VLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDV 828
+L +TH+ + + D V VI +G++ + ++V
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 25/229 (10%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQT---LFRIVEPAAXXXXXXXXXXXXXXXXXX 1321
L +S P + G++G +G+GKSTLI+ L R E +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1322 RTRLSIIPQD-PVMFEGTVRSNVD-PLE------EYTDEQIWEALDKCQLGDEVRKKEGK 1373
R ++ I Q ++ TV NV PLE + ++ E L LGD K
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 156
Query: 1374 LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHF 1431
DS + N S GQ+Q V + R L K+L+ D+AT+++D AT I + L+
Sbjct: 157 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1432 SDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDSPRKLLENKSSSFSQ 1479
T++ I H V D V ++S+G + E D+ ++ + + +Q
Sbjct: 213 LGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 32/222 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 682
+ D++L + G VA+ G G+GKS+LL + G + G L G T
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 683 KAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGIN 742
+A + Q + ++ +M R Y D +L+ ++++ D + +R
Sbjct: 87 RAVMRQYSELAFPFSVSEVI---QMGRAPYGGSQDRQALQ---QVMAQTDCLALAQRDYR 140
Query: 743 -LSGGQKQRIQIARALY-----QDADIYLF-DDPFSAVDAHTGSHLFKEVLLGLLNSK-- 793
LSGG++QR+Q+AR L Q +LF D+P SA+D + H + LL L +
Sbjct: 141 VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR--LLRQLTRQEP 198
Query: 794 -TVLYVTHQVEFLPA-ADLVLVIKDGKITQAGKYTDVINSGT 833
V V H + AD ++++ GK+ G +V+N+ T
Sbjct: 199 LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAET 240
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 24/195 (12%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG--------------KIE 698
G G+GKS L I G V G ++L G A + P + G +
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNG--ADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 699 DNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALY 758
NI +G EK G ++ + LSGG++QR+ +ARAL
Sbjct: 89 RNIAYGLRNVERVERDRRVREMAEK------LGIAHLLDRKPARLSGGERQRVALARALV 142
Query: 759 QDADIYLFDDPFSAVDAHTGSHLFKEV-LLGLLNSKTVLYVTHQ-VEFLPAADLVLVIKD 816
+ L D+P SAVD T L +E+ + +L+VTH +E AD V V+ +
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202
Query: 817 GKITQAGKYTDVINS 831
G+I + GK ++ ++
Sbjct: 203 GRIVEKGKLKELFSA 217
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 28/215 (13%)
Query: 1280 IVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGT- 1338
++G TG+GKS ++ + IV+P R + +PQD +F
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 1339 --------VRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1390
+R+ + ++ E L L D +K +L S G+R
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD---RKPARL-----------SGGER 132
Query: 1391 QLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHR-ITSVI 1447
Q V L R L+ + ++L+LDE ++VD T ++ + LR Q D ++ + H I + +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Query: 1448 DSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVA 1482
+D V ++ +G I E ++L K+ ++ ++
Sbjct: 193 LADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI 701
++ G + + G G GK++ + + G G ++ T AY Q +I++ + E +
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKA-EYEGTV 434
Query: 702 --LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQ 759
L K +D + N+ L K L I+ D+ V +LSGG+ QR+ IA L +
Sbjct: 435 YELLSK-IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLR 488
Query: 760 DADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNSKTVLYVTHQVEFLPAADLVLVIKDGK 818
DADIYL D+P + +D + + + L N KT L V H V + L++ +G+
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 548
Query: 819 ITQAGK 824
+ G+
Sbjct: 549 PGRHGR 554
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTHQ 801
LSGG+ QR+ IA AL + A Y FD+P S +D + + V+ L N K VL V H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEHD 287
Query: 802 VEFL 805
+ L
Sbjct: 288 LAVL 291
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI 701
++ G + + G G GK++ + + G G ++ T AY Q +I++ + E +
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKA-EYEGTV 420
Query: 702 --LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQ 759
L K +D + N+ L K L I+ D+ V +LSGG+ QR+ IA L +
Sbjct: 421 YELLSK-IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLR 474
Query: 760 DADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNSKTVLYVTHQVEFLPAADLVLVIKDGK 818
DADIYL D+P + +D + + + L N KT L V H V + L++ +G+
Sbjct: 475 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
Query: 819 ITQAGK 824
+ G+
Sbjct: 535 PGRHGR 540
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-KTVLYVTHQ 801
LSGG+ QR+ IA AL + A Y FD+P S +D + + V+ L N K VL V H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEHD 273
Query: 802 VEFL 805
+ L
Sbjct: 274 LAVL 277
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 23/218 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----AYVAQSPW 691
LK I+ ++ G + + G G+GK++LL+ + P SGT+ L G Y A++
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVR 96
Query: 692 IQSGKIEDNILFGKEMDRERYNAVLDACSLEK-------DLEILSFGDQ--TVVGERGIN 742
G + ++L K + ER V+ + + + D EI + Q +VG
Sbjct: 97 QHIGFVSHSLL-EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 743 ------LSGGQKQRIQIARALYQDADIYLFDDPFSAVD--AHTGSHLFKEVLLGLLNSKT 794
LS G+KQR+ IARAL + + D+P + +D A + L +
Sbjct: 156 QQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLA 215
Query: 795 VLYVTHQVEFLPAA-DLVLVIKDGKITQAGKYTDVINS 831
+YVTH +E + A +L++KDG+ Q G D++ S
Sbjct: 216 XIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-----LLGLLNSKTVLY 797
LSGGQ+QR+ + RA+ + ++L D+P S +DA + E+ LG+ T +Y
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV----TTIY 195
Query: 798 VTH-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
VTH QVE + D + V+ G + Q G +V
Sbjct: 196 VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAH-R 1442
S GQRQ V LGR ++++ ++ ++DE +++D ++ L+ Q T I + H +
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200
Query: 1443 ITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ ++ D + +++ G++++ SP ++ + +++F
Sbjct: 201 VEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 55/245 (22%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-- 675
+++ + N+++ +H LK IN+ + G A+ G G GKS+L G + SG
Sbjct: 8 LKVEELNYNYSDGTH--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 676 -------------TLKLCGTKAYVAQSPWIQ--SGKIEDNILFG-------KEMDRERYN 713
+KL + V Q P Q S + ++ FG ++ R+R +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 714 AVLDACSLE----KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDP 769
L +E K LSFG QK+R+ IA L + + + D+P
Sbjct: 126 NALKRTGIEHLKDKPTHCLSFG---------------QKKRVAIAGVLVMEPKVLILDEP 170
Query: 770 FSAVDAHTGSHLFKEVL-----LGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
+ +D S + K ++ LG+ T++ TH ++ +P D V V+K+G++ G
Sbjct: 171 TAGLDPMGVSEIMKLLVEMQKELGI----TIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226
Query: 824 KYTDV 828
+V
Sbjct: 227 NPKEV 231
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTR 1324
L+GI+ + T I+G G GKSTL Q I++P++ + R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1325 --LSIIPQDP--VMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1380
+ I+ QDP +F +V +V + A++ DE+RK+ +D+ +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVS----------FGAVNMKLPEDEIRKR---VDNALKR 130
Query: 1381 NG---------ENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL--RQ 1429
G S GQ++ V + VL+ K+L+LDE TA +D + I + L Q
Sbjct: 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 1430 HFSDCTVITIAHRITSV-IDSDMVLLLSHGLIEEYDSPRKLLENK 1473
T+I H I V + D V ++ G + +P+++ K
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI 701
++ G + + G G GK++ + + G G ++ T AY Q +I++
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ--YIKADYEGTVY 365
Query: 702 LFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDA 761
++D + N+ L K L I+ D+ V LSGG+ QR+ IA L +DA
Sbjct: 366 ELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDA 420
Query: 762 DIYLFDDPFSAVDAHTGSHLFKEVL-LGLLNSKTVLYVTHQV 802
DIYL D+P + +D + + + L N KT L V H V
Sbjct: 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 44/202 (21%)
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGE-VPKI---------------------------S 674
V G V + G G+GKS+ + + G+ +P + +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 675 GTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQT 734
G ++ YV P GK+ + L K + + V+ A LE LE
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIE--LLKKADETGKLEEVVKALELENVLE-------- 153
Query: 735 VVGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK 793
R I +LSGG+ QR+ IA AL ++A Y FD+P S +D + + + K
Sbjct: 154 ----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209
Query: 794 TVLYVTHQVEFLP-AADLVLVI 814
+VL V H + L +D++ V+
Sbjct: 210 SVLVVEHDLAVLDYLSDIIHVV 231
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-----LLGLLNSKTVLY 797
LSGGQ+QR+ + RA+ + ++L D+P S +DA E+ LG+ T +Y
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGV----TTIY 198
Query: 798 VTH-QVEFLPAADLVLVIKDGKITQAGKYTDV 828
VTH QVE D + V G++ Q G +V
Sbjct: 199 VTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 38.9 bits (89), Expect = 0.020, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 1386 SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAH-R 1442
S GQRQ V LGR +++R K+ + DE +++D + L+ Q T I + H +
Sbjct: 144 SGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQ 203
Query: 1443 ITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSF 1477
+ + D + + + G +++ +P ++ ++F
Sbjct: 204 VEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTF 238
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 616 TAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675
+ +EI D + +D P L+ I + + G V G G GK++LL I + + G
Sbjct: 9 SKLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 676 TLKLCGT-------KAYVAQSPWIQSGKI--EDNI-----LFGKEMDRERYNAVLDACSL 721
+ G K + I KI ED + L+G ++++ N ++DA
Sbjct: 65 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK---NEIMDAL-- 119
Query: 722 EKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 781
+ +E+L + +GE LS G +R+Q+A L +A+IY+ DDP A+D + +
Sbjct: 120 -ESVEVLDLKKK--LGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 782 FKEVLLGLLNSKTVLYVTHQVEF 804
K + L +L K ++ ++ + E
Sbjct: 173 LKSI-LEILKEKGIVIISSREEL 194
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 18/198 (9%)
Query: 1247 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXX 1306
K+++RDL V Y VL I+ T G G GK+TL++T+ ++P
Sbjct: 10 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1307 XXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLG 1364
II + E +++ V L + +I +AL+ ++
Sbjct: 67 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKA-VASLYGVKVNKNEIMDALESVEVL 125
Query: 1365 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQ 1424
D ++KK G+L S G + V L LL +I +LD+ ++D + + +
Sbjct: 126 D-LKKKLGEL-----------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 1425 QSLRQHFSDCTVITIAHR 1442
+S+ + + ++ I+ R
Sbjct: 174 KSILEILKEKGIVIISSR 191
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 723 KDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 782
+ L ++ + V+ + LSGG KQR+ IA AL D + + D+P SA+D T +H+
Sbjct: 135 EKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHII 194
Query: 783 KEVLLGLLNSK-TVLYVTHQVEFLPA-ADLVLVIKDGKITQ 821
+ + K T+++VTH + AD V VI G + +
Sbjct: 195 QLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 28/205 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK---------- 683
LK I+L V G V++ G GSGKS+LL ILG + P G + L G +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKEVDYTNEKELS 77
Query: 684 -------AYVAQSPWI--QSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQT 734
+V Q ++ + +E+ I+ +M + + A E L L GD+
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG---EYLLSELGLGDK- 133
Query: 735 VVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKT 794
+ + LSGG++QR+ IARAL + + D+P +D+ + L +
Sbjct: 134 -LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTS 192
Query: 795 VLYVTHQVEFLPAADLVLVIKDGKI 819
++ VTH+ E L +KDGK+
Sbjct: 193 IVMVTHERELAELTHRTLEMKDGKV 217
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-----YVAQS 689
+L++INL+V +G +V + G GSGK++LL I G +P SG + + G + Y+ S
Sbjct: 20 SLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRKIRNYIRYS 77
Query: 690 PWI----QSGKIEDNILFGKE----MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGI 741
+ + G ++I++ E +DR+ + +L A L G++ ++ +
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA---------LKLGEE-ILRRKLY 127
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA---HTGSHLFKEVLLGLLNSKTVLYV 798
LS GQ ++ + AL +I D+PF VDA H S KE K + V
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY------GKEGILV 181
Query: 799 THQVEFL 805
TH+++ L
Sbjct: 182 THELDML 188
Score = 33.9 bits (76), Expect = 0.77, Method: Composition-based stats.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 1263 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXR 1322
F L I+ GEK I+G GSGK+TL++ + ++ +
Sbjct: 19 FSLENINLEVNGEKVI-ILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYS 77
Query: 1323 TRLSIIPQDPVMFEGTVRSN-----VDPLEEYTDEQIWEALDKCQLGDEV-RKKEGKLDS 1376
T L P +E V N + L+ + E L +LG+E+ R+K KL
Sbjct: 78 TNL------PEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKL-- 129
Query: 1377 KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTV 1436
S GQ LV L + +I+ LDE +VD A ++I + ++++ + +
Sbjct: 130 ---------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGIL 180
Query: 1437 IT 1438
+T
Sbjct: 181 VT 182
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 18/211 (8%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----AYVAQSP 690
+K I+LKV G V + G G+GK++ LS I G V G + G A+V
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 691 WI----QSGKIEDNILFGKEMDRERYNAVLDACSLEKDLEILSFGDQTVVGER----GIN 742
I + +I + + + YN D +++DLE + F + ER G
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRK-DKEGIKRDLEWI-FSLFPRLKERLKQLGGT 139
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQV 802
LSGG++Q + I RAL + D+P + S +F EV+ + T + + Q
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVF-EVIQKINQEGTTILLVEQN 198
Query: 803 EF--LPAADLVLVIKDGKITQAGKYTDVINS 831
L A V++ G+I GK ++++++
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASELLDN 229
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQV 802
LSGG QR+ +A +L ++AD+Y+FD P S +D ++ K + LL +K V+ V H +
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKYVIVVDHDL 197
Query: 803 EFLP-AADLVLVI 814
L DL+ +I
Sbjct: 198 IVLDYLTDLIHII 210
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 742 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLY-VTH 800
+LSGG+ Q++ IA L ++AD+Y+ D P S +D + K + K V + + H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 801 QVEFLP-AADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSE 859
+ AD ++V K G+ +AG T + T E + + D+ GRP
Sbjct: 445 DLSIHDYIADRIIVFK-GEPEKAGLATSPVTLKTGMNEFLRELEVTFRR-DAETGRPRVN 502
Query: 860 K 860
K
Sbjct: 503 K 503
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 736 VGERGINLSGGQKQRIQIARALYQDA---DIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS 792
+G+ LSGG+ QRI++A L + +Y+ D+P + + L ++++ +
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 793 KTVLYVTHQVEFLPAADLVLVIKDGKITQAGK 824
TV+ V H+++ + A+D VL I G G+
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGR 815
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 614 SETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL 662
S + + DG F + LKDI++KV V G GSGKSSL
Sbjct: 4 SRPSPDFPDGGFVQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSL 52
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 110/250 (44%), Gaps = 13/250 (5%)
Query: 1246 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXX 1305
G + ++DL+ R +L+GIS + G++G G+GK+T ++ + +++P++
Sbjct: 14 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS-G 70
Query: 1306 XXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGD 1365
R +S +P+ E N+ +E + A ++ +
Sbjct: 71 IVTVFGKNVVEEPHEVRKLISYLPE-----EAGAYRNMQGIEYLRFVAGFYASSSSEIEE 125
Query: 1366 EVRKKE--GKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLI 1423
V + L K+ + +S G + + + R L+ ++ +LDE T+ +D +
Sbjct: 126 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 185
Query: 1424 QQSLRQHFSD-CTVITIAHRITSV-IDSDMVLLLSHGLIEEYDSPRKLLEN-KSSSFSQL 1480
++ L+Q + T++ +H + V D + L+ +G I E + +L E K+ + ++
Sbjct: 186 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEV 245
Query: 1481 VAEYTQRSSS 1490
E + S +
Sbjct: 246 FEEVVKCSEN 255
Score = 39.7 bits (91), Expect = 0.014, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
LK I+ ++ G + G G+GK++ L I + SG + + G V + P
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN--VVEEP----H 84
Query: 696 KIEDNILFGKE----------MDRERYNAVLDACS-------LEKDLEILSFGDQTVVGE 738
++ I + E ++ R+ A A S +E+ EI G++ + +
Sbjct: 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK--IKD 142
Query: 739 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYV 798
R S G +++ IARAL + + + D+P S +D + K + T+L
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 799 TH---QVEFLPAADLVLVIKDGKITQAG 823
+H +VEFL D + +I +G I + G
Sbjct: 203 SHNMLEVEFL--CDRIALIHNGTIVETG 228
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 35/218 (16%)
Query: 641 LKVFHGMRVAVC--------GTVGSGKSSLLSCILGEVPKISGTLKLCG----------- 681
K G+ ++VC G GSGKS+L++ I G + G +
Sbjct: 20 FKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 682 -----TKAYVAQSPWIQSGKIEDNILFGKEMDRER-YNAVL-------DACSLEKDLEIL 728
+ + P ++ + +N+L G+ E N++ + +EK +IL
Sbjct: 80 YHYGIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 729 SFGDQTVVGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
F + + +R LSGGQ + ++I RAL + + + D+P + V +F VL
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 788 GLLNSKTVLYVTHQVEF-LPAADLVLVIKDGKITQAGK 824
T L + H+++ L D + V+ +G+I G+
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 1345 PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404
P EE E+ ++ L+ +L +K G+L S GQ +LV +GR L+ K
Sbjct: 125 PKEEEMVEKAFKILEFLKLSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPK 173
Query: 1405 ILMLDEATASVDTA-TDNLIQQSLRQHFSDCTVITIAHRITSVID 1448
++++DE A V ++ L T + I HR+ V++
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 218
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 721 LEKDLEILSFGDQTVVGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
+EK +IL F + + +R LSGGQ + ++I RAL + + + D+P + V
Sbjct: 131 VEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 780 HLFKEVLLGLLNSKTVLYVTHQVEF-LPAADLVLVIKDGKITQAGK 824
+F VL T L + H+++ L D + V+ +G+I G+
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 1345 PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK 1404
P EE E+ ++ L+ +L +K G+L S GQ +LV +GR L+ K
Sbjct: 125 PKEEEMVEKAFKILEFLKLSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPK 173
Query: 1405 ILMLDEATASVDTA-TDNLIQQSLRQHFSDCTVITIAHRITSVID 1448
++++DE A V ++ L T + I HR+ V++
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 218
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 743 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQV 802
LSGG+ QR I + Q+AD+Y+FD+P S +D + + + L +K V+ V H +
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281
Query: 803 EFLP-AADLVLVI 814
L +D V +I
Sbjct: 282 SVLDYLSDFVCII 294
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 21/169 (12%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI--LFGKEMDRE 710
G G+GK++L+ + G + G K V+ P + K + LF K++ +
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441
Query: 711 RYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPF 770
N + K L I DQ V +LSGG+ QR+ I AL ADIYL D+P
Sbjct: 442 FLNPQFQT-DVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPS 495
Query: 771 SAVDAHTG---SHLFKEVLLGLLNSKTVLYVTHQVEFLPA---ADLVLV 813
+ +D+ S + + +L N KT V H +F+ A AD V+V
Sbjct: 496 AYLDSEQRIICSKVIRRFILH--NKKTAFIVEH--DFIMATYLADKVIV 540
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 721 LEKDLEILSFGDQTVVGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 779
+EK +IL F + + +R LSGGQ + ++I RAL + + + D P + V
Sbjct: 131 VEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAH 190
Query: 780 HLFKEVLLGLLNSKTVLYVTHQVEF-LPAADLVLVIKDGKITQAGK 824
+F VL T L + H+++ L D + V+ +G+I G+
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 736 VGERGINLSGGQKQRIQIARALYQDAD---IYLFDDPFSAVDAHTGSHLFKEVLLGLL-N 791
+G+ LSGG+ QR+++A L++ ++ +Y+ D+P + + + L +VL L+ N
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN 897
Query: 792 SKTVLYVTHQVEFLPAADLVL 812
TVL + H ++ + AD ++
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
DG + + + LK++++K+ G VAV G GSGKS+L++ +L
Sbjct: 626 DGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 21/145 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPKISGTLKLCGTKAYVAQSPWIQS 694
L L++ R +CG G GKS+L+ I G+V T + C T YV
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFP-TQEECRT-VYVEHD----- 503
Query: 695 GKIEDNILFGKEMDRERYNAVLDACSLEKDL---EILSFG--DQTVVGERGINLSGGQKQ 749
+ G D + V ++ K+ +++ FG D+ + LSGG K
Sbjct: 504 -------IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA-LSGGWKM 555
Query: 750 RIQIARALYQDADIYLFDDPFSAVD 774
++ +ARA+ ++ADI L D+P + +D
Sbjct: 556 KLALARAVLRNADILLLDEPTNHLD 580
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 721 LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT--- 777
+E+ +L + V R LSGGQK ++ +A +Q + + D+P + +D +
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA 939
Query: 778 GSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
S KE G V+ +TH EF + V +KDG++T +G
Sbjct: 940 LSKALKEFEGG------VIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-- 675
+++ + F + +S P + DIN + R+AV G G+GKS+L++ + GE+ SG
Sbjct: 672 VKVTNMEFQYPGTS-KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 676 -TLKLCGTKAYVAQ 688
T + C AY+ Q
Sbjct: 731 YTHENCRI-AYIKQ 743
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 736 VGERGINLSGGQKQRIQIARALYQDAD---IYLFDDPFSAVDAHTGSHLFKEVLLGLL-N 791
+G+ LSGG+ QR+++A L++ ++ +Y+ D+P + + + L +VL L+ N
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN 595
Query: 792 SKTVLYVTHQVEFLPAADLVL 812
TVL + H ++ + AD ++
Sbjct: 596 GDTVLVIEHNLDVIKTADYII 616
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
DG + + + LK++++K+ G VAV G GSGKS+L++ +L
Sbjct: 324 DGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 736 VGERGINLSGGQKQRIQIARALYQDAD---IYLFDDPFSAVDAHTGSHLFKEVLLGLL-N 791
+G+ LSGG+ QR+++A L++ ++ +Y+ D+P + + + L +VL L+ N
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN 897
Query: 792 SKTVLYVTHQVEFLPAADLVL 812
TVL + H ++ + AD ++
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
DG + + + LK++++K+ G VAV G GSGKS+L++ +L
Sbjct: 626 DGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPKISGTLKLCGTKAYVAQSPWIQS 694
L L++ R +CG G GKS+L I G+V T + C T YV
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFP-TQEECRT-VYVEHD----- 503
Query: 695 GKIEDNILFGKEMDRERYNAVLDACSLEKDL---EILSFG--DQTVVGERGINLSGGQKQ 749
+ G D + V ++ K+ +++ FG D+ + LSGG K
Sbjct: 504 -------IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISA-LSGGWKX 555
Query: 750 RIQIARALYQDADIYLFDDPFSAVD 774
++ +ARA+ ++ADI L D+P + +D
Sbjct: 556 KLALARAVLRNADILLLDEPTNHLD 580
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 721 LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT--- 777
+E+ L + V R LSGGQK ++ +A +Q + + D+P + +D +
Sbjct: 880 IEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA 939
Query: 778 GSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
S KE G V+ +TH EF + V +KDG+ T +G
Sbjct: 940 LSKALKEFEGG------VIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-- 675
+++ + F + +S P + DIN + R+AV G G+GKS+L++ + GE+ SG
Sbjct: 672 VKVTNXEFQYPGTS-KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 676 -TLKLCGTKAYVAQ 688
T + C AY+ Q
Sbjct: 731 YTHENCRI-AYIKQ 743
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPKISGTLKLCGTKAYVAQSPWIQS 694
L L++ R +CG G GKS+L I G+V T + C T YV
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFP-TQEECRT-VYVEHD----- 497
Query: 695 GKIEDNILFGKEMDRERYNAVLDACSLEKDL---EILSFG--DQTVVGERGINLSGGQKQ 749
+ G D + V ++ K+ +++ FG D+ + LSGG K
Sbjct: 498 -------IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISA-LSGGWKX 549
Query: 750 RIQIARALYQDADIYLFDDPFSAVD 774
++ +ARA+ ++ADI L D+P + +D
Sbjct: 550 KLALARAVLRNADILLLDEPTNHLD 574
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-- 675
+++ + F + +S P + DIN + R+AV G G+GKS+L++ + GE+ SG
Sbjct: 666 VKVTNXEFQYPGTS-KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Query: 676 -TLKLCGTKAYVAQ 688
T + C AY+ Q
Sbjct: 725 YTHENCRI-AYIKQ 737
Score = 37.7 bits (86), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 721 LEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT--- 777
+E+ L + V R LSGGQK ++ +A +Q + + D+P + +D +
Sbjct: 874 IEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA 933
Query: 778 GSHLFKEVLLGLLNSKTVLYVTHQVEFLPA-ADLVLVIKDGKITQAG 823
S KE G V+ +TH EF + V +KDG+ T +G
Sbjct: 934 LSKALKEFEGG------VIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 51/252 (20%)
Query: 610 PRGSSETAIEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG- 668
PRGS + I D + S + + L+ ++L V G A+ G GSGKS+L + + G
Sbjct: 15 PRGSH--MLSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
Query: 669 -EVPKISGTLKLCGTKAYVAQSPWIQSGK---------IE----DNILF----------- 703
+ GT++ G K +A SP ++G+ +E N F
Sbjct: 70 EDYEVTGGTVEFKG-KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY 128
Query: 704 -GKE-MDRERYNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARALYQDA 761
G+E +DR + ++ E+ + +L + + + SGG+K+R I + +
Sbjct: 129 RGQETLDRFDFQDLM-----EEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP 183
Query: 762 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLNS-----KTVLYVTHQVEFLP--AADLVLVI 814
++ + D+ S +D K V G +NS ++ + VTH L D V V+
Sbjct: 184 ELCILDESDSGLDIDA----LKVVADG-VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 238
Query: 815 KDGKITQAGKYT 826
G+I ++G +T
Sbjct: 239 YQGRIVKSGDFT 250
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 34.7 bits (78), Expect = 0.42, Method: Composition-based stats.
Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 48/231 (20%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIED 699
G G+GKS+LL+ + G + G+++ G +AY++Q
Sbjct: 33 GPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91
Query: 700 NILFGKEMDRER---YNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756
+ L + D+ R N V A +L+ L G LSGG+ QR+++A
Sbjct: 92 HYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAV 140
Query: 757 LYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK--TVLYVTHQVEF-LP 806
+ Q + L D P +++D S L K +L L+ + ++ +H + L
Sbjct: 141 VLQITPQANPAGQLLLLDQPMNSLDVAQQSALDK--ILSALSQQGLAIVMSSHDLNHTLR 198
Query: 807 AADLVLVIKDGKITQAGKYTDVINS-------GTDFMEL-VDAHKQALSTL 849
A ++K GK+ +G+ +V+ G +F L ++ H+ +ST+
Sbjct: 199 HAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEGHRMLISTI 249
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 46/226 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSPWIQ 693
L+ ++L V G A+ G GSGKS+L + + G + GT++ G K +A SP +
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLALSPEDR 75
Query: 694 SGK---------IE----DNILF------------GKE-MDRERYNAVLDACSLEKDLEI 727
+G+ +E N F G+E +DR + ++ E+ + +
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLM-----EEKIAL 130
Query: 728 LSFGDQTVVGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 787
L + + + SGG+K+R I + + ++ + D+ S +D K V
Sbjct: 131 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA----LKVVAD 186
Query: 788 GLLNS-----KTVLYVTHQVEFLP--AADLVLVIKDGKITQAGKYT 826
G +NS ++ + VTH L D V V+ G+I ++G +T
Sbjct: 187 G-VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 33.9 bits (76), Expect = 0.65, Method: Composition-based stats.
Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 48/231 (20%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIED 699
G G+GKS+LL+ + G + G+++ G +AY++Q
Sbjct: 33 GPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91
Query: 700 NILFGKEMDRER---YNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756
+ L + D+ R N V A +L+ L G LSGG+ QR+++A
Sbjct: 92 HYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAV 140
Query: 757 LYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK--TVLYVTHQVEF-LP 806
+ Q + L D P ++D S L K +L L+ + ++ +H + L
Sbjct: 141 VLQITPQANPAGQLLLLDQPMCSLDVAQQSALDK--ILSALSQQGLAIVMSSHDLNHTLR 198
Query: 807 AADLVLVIKDGKITQAGKYTDVINS-------GTDFMEL-VDAHKQALSTL 849
A ++K GK+ +G+ +V+ G +F L ++ H+ +ST+
Sbjct: 199 HAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEGHRMLISTI 249
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 736 VGERGINLSGGQKQRIQIARALYQ---DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN- 791
+G+ LSGG+ QRI++A L + +Y+ D+P + L EVL L++
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDR 857
Query: 792 SKTVLYVTHQVEFLPAADLVL 812
TV+ + H ++ + AD ++
Sbjct: 858 GNTVIVIEHNLDVIKNADHII 878
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 743 LSGGQKQRIQIARALYQD--ADIYLFDDPFSAVDAHTGSHLFKEV--LLGLLNSKTVLYV 798
LSGG+ QRI++A + IY+ D+P + L K + L L N TV+ V
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN--TVIVV 522
Query: 799 THQVEFLPAADLVLVI 814
H E + AD ++ I
Sbjct: 523 EHDEEVIRNADHIIDI 538
>pdb|3KDP|B Chain B, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|D Chain D, Crystal Structure Of The Sodium-potassium Pump
Length = 286
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 1322 RTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1381
+T +S P DP +E V S V LE+Y D Q D + + G + S++ E
Sbjct: 68 KTEISFRPNDPQSYESYVVSIVRFLEKYK--------DLAQKDDMIFEDCGNVPSELKER 119
Query: 1382 GE-NWSMGQRQLVCLGRV 1398
GE N G+R+ VC R+
Sbjct: 120 GEYNNERGERK-VCRSRL 136
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 48/231 (20%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIED 699
G G+GKS+LL+ G G+++ G +AY++Q
Sbjct: 33 GPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91
Query: 700 NILFGKEMDRER---YNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756
+ L + D+ R N V A +L+ L G LSGG+ QR+++A
Sbjct: 92 HYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAV 140
Query: 757 LYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSK--TVLYVTHQVEF-LP 806
+ Q + L D+P +++D S L K +L L+ + ++ +H + L
Sbjct: 141 VLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK--ILSALSQQGLAIVXSSHDLNHTLR 198
Query: 807 AADLVLVIKDGKITQAGKYTDVINS-------GTDFMEL-VDAHKQALSTL 849
A ++K GK +G+ +V+ G +F L ++ H+ +ST+
Sbjct: 199 HAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIEGHRXLISTI 249
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 736 VGERGINLSGGQKQRIQIARALYQDA---DIYLFDDPFSAVDAHTGSHLFKEVLLGLLN- 791
+G+ LSGG+ QR+++A L + + +Y+ D+P + + L V+ GL++
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDK 915
Query: 792 SKTVLYVTHQVEFLPAADLVL 812
TV+ + H ++ + +D ++
Sbjct: 916 GNTVIVIEHNLDVIKTSDWII 936
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 1265 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV 1299
LRGI +FP T + G +GSGKSTL+ + V
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAV 692
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 743 LSGGQKQRIQIARALYQD--ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLN-SKTVLYVT 799
LSGG+ QRI++A + +Y+ D+P + L E L L + T++ V
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDLGNTLIVVE 580
Query: 800 HQVEFLPAADLVLVIKDGKITQAGKYTDVINSGTDFMELVDAHKQALSTLDSIEGRPLSE 859
H + + AD ++ I G G+ +++SG + + L DSI G LS
Sbjct: 581 HDEDTIEHADWIVDIGPGAGEHGGR---IVHSG--------PYDELLRNKDSITGAYLSG 629
Query: 860 KGS 862
+ S
Sbjct: 630 RES 632
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 44/229 (19%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIED 699
G G+GKS+LL+ G G+++ G +AY++Q
Sbjct: 33 GPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91
Query: 700 NILFGKEMDRER---YNAVLDACSLEKDLEILSFGDQTVVGERGINLSGGQKQRIQIARA 756
+ L + D+ R N V A +L+ L G LSGG+ QR+++A
Sbjct: 92 HYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAV 140
Query: 757 LYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLNSKTVLYVTHQVEF-LPAA 808
+ Q + L D+P +++D S L K + ++ +H + L A
Sbjct: 141 VLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHA 200
Query: 809 DLVLVIKDGKITQAGKYTDVINS-------GTDFMEL-VDAHKQALSTL 849
++K GK +G+ +V+ G +F L ++ H+ +ST+
Sbjct: 201 HRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIEGHRXLISTI 249
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 1386 SMGQRQLVCLGRV--LLKRRKI--LMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAH 1441
S G+R L + + +LK R + +LDE A++D A Q L+++ SD I I H
Sbjct: 330 SGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVITH 389
Query: 1442 RITSVIDSDMV 1452
R ++ ++D++
Sbjct: 390 RKGTMEEADVL 400
>pdb|3N23|B Chain B, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|D Chain D, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|B Chain B, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|D Chain D, Crystal Structure Of The Sodium-Potassium Pump
Length = 277
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 1322 RTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1381
+T +S P DP +E V S V LE+Y D Q D + + G + S++ E
Sbjct: 59 KTEISFRPNDPQSYESYVVSIVRFLEKYK--------DLAQKDDMIFEDCGNVPSELKER 110
Query: 1382 GE-NWSMGQRQLVCLGRV 1398
GE N G+R+ VC R+
Sbjct: 111 GEYNNERGERK-VCRFRL 127
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 645 HGMRVAVCGTVGSGKSSLLSCILGE----VPKISGTLK 678
HGM+V + G +GKSSLL+ + G V I+GT +
Sbjct: 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 623 GNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682
GN S+ + LK+I+ V + VAV G GSGKSS ++ + G + G K
Sbjct: 49 GNIQLTNSAISDALKEIDSSV---LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV 105
Query: 683 KAYVAQSPW 691
+ + + P+
Sbjct: 106 EVTMERHPY 114
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+ + GN S+ + LK+I+ V + VAV G GSGKSS ++ + G + G
Sbjct: 44 LRMRKGNIQLTNSAISDALKEIDSSV---LNVAVTGETGSGKSSFINTLRGIGNEEEGAA 100
Query: 678 KLCGTKAYVAQSPW 691
K + + + P+
Sbjct: 101 KTGVVEVTMERHPY 114
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+ + GN S+ + LK+I+ V + VAV G GSGKSS ++ + G + G
Sbjct: 44 LRMRKGNIQLTNSAISDALKEIDSSV---LNVAVTGETGSGKSSFINTLRGIGNEEEGAA 100
Query: 678 KLCGTKAYVAQSPW 691
K + + + P+
Sbjct: 101 KTGVVEVTMERHPY 114
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 618 IEIADGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
+ + GN S+ + LK+I+ V + VAV G GSGKSS ++ + G + G
Sbjct: 44 LRMRKGNIQLTNSAISDALKEIDSSV---LNVAVTGETGSGKSSFINTLRGIGNEEEGAA 100
Query: 678 KLCGTKAYVAQSPW 691
K + + + P+
Sbjct: 101 KTGVVEVTMERHPY 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,469,901
Number of Sequences: 62578
Number of extensions: 1542315
Number of successful extensions: 3754
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3284
Number of HSP's gapped (non-prelim): 327
length of query: 1495
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1384
effective length of database: 8,027,179
effective search space: 11109615736
effective search space used: 11109615736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)