BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000453
(1491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/945 (41%), Positives = 554/945 (58%), Gaps = 83/945 (8%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRY-ELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYK 82
G +D+T LSYLHEP VL NL R+ + IYTY G +L+A+NP+++LP +Y ++ Y
Sbjct: 70 GENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLP-IYGEDIINAYS 128
Query: 83 GAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG 142
G G++ PH+FAV + AY+ M + ++ SI+VSGESGAGKT + K MRY A + G S
Sbjct: 129 GQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSG-SA 187
Query: 143 VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
E VE++VL SNP++E+ GNAKT RN+NSSRFGK++EI FDK RI GA +RTYLLE+
Sbjct: 188 SEA-NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEK 246
Query: 203 SRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV ++ ERNYH FY LCA A + +LG+ FHY Q +DG+ DA E +
Sbjct: 247 SRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMV 306
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+A ++GISD Q IFR++A ILHLGN++FA ++ DS I + L + +L
Sbjct: 307 NTRQACTLLGISDSYQMGIFRILAGILHLGNVEFA-SRDSDSCAIPPKHD--PLTIFCDL 363
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ D + + L R + T E + + ++A+ +RDALAK IY+ LF+WIV+ +N ++
Sbjct: 364 MGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKAL 423
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
S IGVLDIYGFE+F+ NSFEQFCIN+ NEKLQQ FN HVFK+EQEEY +E+I
Sbjct: 424 HSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIP 483
Query: 442 WSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FAKNNRFSKPK 500
W+ I+F DNQ ++LIE K G++ LLDE C PK + +T++QKL T K F KP+
Sbjct: 484 WTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPR 542
Query: 501 LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAK------------------ 542
LS F I H+A +V YQ FL+KNKD V E +L ++K
Sbjct: 543 LSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISP 602
Query: 543 ----------CSFVAGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCV 592
S +G +F+ L LMETLNAT PHY+RC+
Sbjct: 603 TSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCI 662
Query: 593 KPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILA--PEVLE 650
KPN+ P F+ +QQLR GVLE IRIS AG+P+R T+ EF +R+ +L +VL
Sbjct: 663 KPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS 722
Query: 651 GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTR 708
D + C+ +L+K L YQ GKTK+F RAGQ+A L+ RA+ L A +IQ+ R
Sbjct: 723 ---DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIR 779
Query: 709 TYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVR 768
++ RK+++ +R AA+ +Q ++RG AR LRR AA+ IQ R YV ++ Y +R
Sbjct: 780 GWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMR 839
Query: 769 SSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRC 828
+ + LQ LR + RN++++ R +II Q R A +Y + +AI+ QC +R
Sbjct: 840 DATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRR 899
Query: 829 RVARRELRKLKMAAR------------ETGALQ----------EAKNKLEKRVE-ELTWR 865
+A+REL+KLK+ AR E +Q E K+ LEK E+T+
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959
Query: 866 LQIEK------RLRTDLEEAKS---------QEIAKLQEALHAMQ 895
+ EK RLR EEAK+ +EIAKL++ LH Q
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 622 bits (1604), Expect = e-178, Method: Compositional matrix adjust.
Identities = 319/678 (47%), Positives = 456/678 (67%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDIYGFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CQERKA-YFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 620 bits (1599), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/678 (46%), Positives = 456/678 (67%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDIYGFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CQERKA-YFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + ++ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 620 bits (1599), Expect = e-177, Method: Compositional matrix adjust.
Identities = 319/688 (46%), Positives = 457/688 (66%), Gaps = 15/688 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSS FGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CSERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 740
Query: 675 KTKVFLRAGQMAELDARRAEVLGNAARK 702
TK+F RAGQ+A ++ R + LG+ K
Sbjct: 741 ITKIFFRAGQLARIEEAREQRLGSEQTK 768
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 619 bits (1597), Expect = e-177, Method: Compositional matrix adjust.
Identities = 319/682 (46%), Positives = 457/682 (67%), Gaps = 15/682 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 98 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 156
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 157 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 216
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 217 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 276
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 277 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 336
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 337 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 392
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 393 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 452
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 453 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 511
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 512 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 571
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 572 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 631
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 632 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 691
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 692 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 751
Query: 675 KTKVFLRAGQMAELDARRAEVL 696
TK+F RAGQ+A ++ R + L
Sbjct: 752 ITKIFFRAGQLARIEEAREQRL 773
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 619 bits (1597), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/680 (46%), Positives = 456/680 (67%), Gaps = 15/680 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 98 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 156
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 157 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 216
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 217 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 276
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 277 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 336
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 337 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 392
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 393 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 452
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 453 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 511
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 512 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 571
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 572 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 631
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 632 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 691
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 692 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 751
Query: 675 KTKVFLRAGQMAELDARRAE 694
TK+F RAGQ+A ++ R +
Sbjct: 752 ITKIFFRAGQLARIEEAREQ 771
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 319/682 (46%), Positives = 457/682 (67%), Gaps = 15/682 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 98 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 156
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 157 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 216
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 217 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 276
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 277 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 336
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 337 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 392
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 393 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 452
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 453 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 511
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 512 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 571
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 572 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 631
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 632 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 691
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 692 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 751
Query: 675 KTKVFLRAGQMAELDARRAEVL 696
TK+F RAGQ+A ++ R + L
Sbjct: 752 ITKIFFRAGQLARIEEAREQRL 773
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 319/682 (46%), Positives = 457/682 (67%), Gaps = 15/682 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 86 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 144
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 145 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 204
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 205 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 264
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 324
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 380
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 381 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 440
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 441 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 619
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 620 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 679
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 680 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 739
Query: 675 KTKVFLRAGQMAELDARRAEVL 696
TK+F RAGQ+A ++ R + L
Sbjct: 740 ITKIFFRAGQLARIEEAREQRL 761
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/680 (46%), Positives = 456/680 (67%), Gaps = 15/680 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 98 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 156
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 157 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 216
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 217 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 276
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 277 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 336
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 337 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 392
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 393 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 452
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 453 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 511
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 512 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 571
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 572 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 631
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 632 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 691
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 692 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 751
Query: 675 KTKVFLRAGQMAELDARRAE 694
TK+F RAGQ+A ++ R +
Sbjct: 752 ITKIFFRAGQLARIEEAREQ 771
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/678 (46%), Positives = 455/678 (67%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 619 bits (1595), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/678 (46%), Positives = 455/678 (67%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 619 bits (1595), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/678 (46%), Positives = 455/678 (67%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 618 bits (1594), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/678 (46%), Positives = 455/678 (67%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CQERKA-YFIGVLDIEGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 618 bits (1593), Expect = e-177, Method: Compositional matrix adjust.
Identities = 317/678 (46%), Positives = 455/678 (67%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + ++ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 617 bits (1591), Expect = e-176, Method: Compositional matrix adjust.
Identities = 317/678 (46%), Positives = 455/678 (67%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNN+SRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNASRFGKFIEIQFNSAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 616 bits (1589), Expect = e-176, Method: Compositional matrix adjust.
Identities = 317/678 (46%), Positives = 454/678 (66%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 86 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 144
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 145 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 204
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 205 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 264
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 324
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 380
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 381 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 440
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 441 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 619
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC
Sbjct: 620 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNA 679
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 680 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 739
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 740 ITKIFFRAGQLARIEEAR 757
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 316/678 (46%), Positives = 455/678 (67%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
++ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CEERKA-YFIGVLDIEGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + ++ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 317/678 (46%), Positives = 454/678 (66%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 86 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 144
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 145 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 204
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 205 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 264
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 324
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 380
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 381 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 440
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 441 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 619
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC
Sbjct: 620 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNV 679
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 680 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 739
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 740 ITKIFFRAGQLARIEEAR 757
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 614 bits (1584), Expect = e-175, Method: Compositional matrix adjust.
Identities = 317/678 (46%), Positives = 453/678 (66%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD E+
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CSE-RAAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 613 bits (1581), Expect = e-175, Method: Compositional matrix adjust.
Identities = 318/682 (46%), Positives = 455/682 (66%), Gaps = 15/682 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+ +P +Y M++ +KG
Sbjct: 86 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIP-IYTQEMVDIFKG 144
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 145 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 204
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 205 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 264
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 324
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 380
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V KIN +
Sbjct: 381 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVIKINNVL 440
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 441 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 619
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 620 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 679
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ +LAP V D Q A +L + + Y+ G
Sbjct: 680 VLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFG 739
Query: 675 KTKVFLRAGQMAELDARRAEVL 696
TK+F RAGQ+A ++ R + L
Sbjct: 740 ITKIFFRAGQLARIEEAREQRL 761
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 612 bits (1577), Expect = e-175, Method: Compositional matrix adjust.
Identities = 316/678 (46%), Positives = 452/678 (66%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD E+
Sbjct: 266 SRVVFQSTTERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CSERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAG--XXXXXXXX 556
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 557 XXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
+ +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFLTVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLEAIRI+ G+P R + +FV R+ LAP V D Q A +L + + ++ G
Sbjct: 681 VLEAIRITRKGFPNRIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 611 bits (1576), Expect = e-175, Method: Compositional matrix adjust.
Identities = 316/678 (46%), Positives = 451/678 (66%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD E+
Sbjct: 266 SRVVFQSTTERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEEEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 442 CSERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ LAP V D Q A +L + + ++ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 608 bits (1569), Expect = e-174, Method: Compositional matrix adjust.
Identities = 314/678 (46%), Positives = 451/678 (66%), Gaps = 15/678 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 145
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 146 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 205
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 206 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEK 265
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD E+
Sbjct: 266 SRVVFQSTSERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFK 325
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 381
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 382 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 441
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQE+Y +E+IN
Sbjct: 442 CSERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEKYLKEKIN 500
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAG--XXXXXXXX 556
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 620
Query: 557 XXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
+ +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 621 AKKGANFLTVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 680
Query: 617 VLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIG 674
VLE IRI+ G+P R + +FV R+ LAP V D Q A +L + + ++ G
Sbjct: 681 VLEGIRITRKGFPNRIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFG 740
Query: 675 KTKVFLRAGQMAELDARR 692
TK+F RAGQ+A ++ R
Sbjct: 741 ITKIFFRAGQLARIEEAR 758
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 597 bits (1538), Expect = e-170, Method: Compositional matrix adjust.
Identities = 324/732 (44%), Positives = 448/732 (61%), Gaps = 45/732 (6%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRY-ELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYK 82
G +D+T LSYLHEP VL NL R+ + IYTY G +L+A+NP+++LP +Y ++ Y
Sbjct: 70 GENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLP-IYGEDIINAYS 128
Query: 83 GAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG 142
G G++ PH+FAV + AY+ M + ++ SI+VSGESGAGKT + K MRY A + G S
Sbjct: 129 GQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSG-SA 187
Query: 143 VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
E VE++VL SNP++E+ GNAKT RN+NSSRFGK++EI FDK RI GA +RTYLLE+
Sbjct: 188 SEA-NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEK 246
Query: 203 SRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV ++ ERNYH FY LCA A + +LG+ FHY Q +DG+ DA E +
Sbjct: 247 SRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMV 306
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+A ++GISD Q IFR++A ILHLGN++FA ++ DS I + L + +L
Sbjct: 307 NTRQACTLLGISDSYQMGIFRILAGILHLGNVEFA-SRDSDSCAIPPKHDP--LTIFCDL 363
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ D + + L R + T E + + ++A+ +RDALAK IY+ LF+WIV+ +N ++
Sbjct: 364 MGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKAL 423
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
S IGVLDIYGFE+F+ NSFEQFCIN+ NEKLQQ FN HVFK+EQEEY +E+I
Sbjct: 424 HSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIP 483
Query: 442 WSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FAKNNRFSKPK 500
W+ I+F DNQ ++LIE K G++ LLDE C PK + +T++QKL T K F KP+
Sbjct: 484 WTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPR 542
Query: 501 LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAK------------------ 542
LS F I H+A +V YQ FL+KNKD V E +L ++K
Sbjct: 543 LSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISP 602
Query: 543 ----------CSFVAGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCV 592
S +G +F+ L LMETLNAT PHY+RC+
Sbjct: 603 TSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCI 662
Query: 593 KPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILA--PEVLE 650
KPN+ P F+ +QQLR GVLE IRIS AG+P+R T+ EF +R+ +L +VL
Sbjct: 663 KPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS 722
Query: 651 GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTR 708
D + C+ +L+K L YQ GKTK+F RAGQ+A L+ RA+ L A +IQ+ R
Sbjct: 723 ---DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIR 779
Query: 709 TYIARKEFILLR 720
++ RK+++ +R
Sbjct: 780 GWLMRKKYMRMR 791
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 584 bits (1505), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/613 (48%), Positives = 421/613 (68%), Gaps = 13/613 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+R+P +Y M++ +KG
Sbjct: 86 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKG 144
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 145 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 204
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 205 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 264
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 324
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 380
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V+KIN +
Sbjct: 381 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVL 440
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDIYGFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 441 CQERKA-YFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 619
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 620 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 679
Query: 617 VLEAIRISCAGYP 629
VLE IRI+ G+P
Sbjct: 680 VLEGIRITRKGFP 692
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 581 bits (1498), Expect = e-166, Method: Compositional matrix adjust.
Identities = 316/706 (44%), Positives = 432/706 (61%), Gaps = 45/706 (6%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRY-ELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYK 82
G +D+T LSYLHEP VL NL R+ + IYTY G +L+A+NP+++LP +Y ++ Y
Sbjct: 70 GENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLP-IYGEDIINAYS 128
Query: 83 GAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG 142
G G++ PH+FAV + AY+ M + ++ SI+VSGESGAGKT + K MRY A + G S
Sbjct: 129 GQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSG-SA 187
Query: 143 VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
E VE++VL SNP++E+ GNAKT RN+NSSRFGK++EI FDK RI GA +RTYLLE+
Sbjct: 188 SEA-NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEK 246
Query: 203 SRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV ++ ERNYH FY LCA A + +LG+ FHY Q +DG+ DA E +
Sbjct: 247 SRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMV 306
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+A ++GISD Q IFR++A ILHLGN++FA ++ DS I + L + +L
Sbjct: 307 NTRQACTLLGISDSYQMGIFRILAGILHLGNVEFA-SRDSDSCAIPPKHDP--LTIFCDL 363
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ D + + L R + T E + + ++A+ +RDALAK IY+ LF+WIV+ +N ++
Sbjct: 364 MGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKAL 423
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
S IGVLDIYGFE+F+ NSFEQFCIN+ NEKLQQ FN HVFK+EQEEY +E+I
Sbjct: 424 HSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIP 483
Query: 442 WSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FAKNNRFSKPK 500
W+ I+F DNQ ++LIE K G++ LLDE C PK + +T++QKL T K F KP+
Sbjct: 484 WTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPR 542
Query: 501 LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAK------------------ 542
LS F I H+A +V YQ FL+KNKD V E +L ++K
Sbjct: 543 LSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISP 602
Query: 543 ----------CSFVAGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCV 592
S +G +F+ L LMETLNAT PHY+RC+
Sbjct: 603 TSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCI 662
Query: 593 KPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILA--PEVLE 650
KPN+ P F+ +QQLR GVLE IRIS AG+P+R T+ EF +R+ +L +VL
Sbjct: 663 KPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS 722
Query: 651 GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRAE 694
D + C+ +L+K L YQ GKTK+F RAGQ+A L+ RA+
Sbjct: 723 ---DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRAD 765
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/615 (47%), Positives = 419/615 (68%), Gaps = 13/615 (2%)
Query: 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG 83
GV+DM++LSYL+EP V NL RY + IYTY+G L+AVNPF+ +P +Y M++ +KG
Sbjct: 86 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIP-IYTQEMVDIFKG 144
Query: 84 AAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV 143
E++PH+FA+ D AYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR+
Sbjct: 145 RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA 204
Query: 144 EGRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLER 202
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+
Sbjct: 205 NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEK 264
Query: 203 SRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261
SRV S+ ERNYH FY LL A E+ L P+SF+YLNQS C ++ GVSD+ E+
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFK 324
Query: 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAEL 321
TR+AMDIVG S +EQ +IF+++A ILHLGNI F KG + +V+KD+ + LN + +
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTV 380
Query: 322 LRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISI 381
+ LE AL++ ++ +++ + L+ + +SRDAL K +Y RLF W+V KIN +
Sbjct: 381 FGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVIKINNVL 440
Query: 382 GQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEIN 441
Q+ + IGVLDI GFE FK NSFEQ CIN+TNEKLQQ FN H+FK+EQEEY +E+IN
Sbjct: 441 CQERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 442 WSYIEF-IDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN-RFSK 498
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL F+K N ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 499 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGXXXXXXXXXX 558
P+ S+T+F + HYAG+V Y+ +L+KNKD + + + + + V
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASR 619
Query: 559 XXXXXXXI--GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGG 616
I +++K QL SLM TL T PH++RC+ PNN P+ E+ V+ QLRC G
Sbjct: 620 AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNG 679
Query: 617 VLEAIRISCAGYPTR 631
VLE IRI+ G+P R
Sbjct: 680 VLEGIRITRKGFPNR 694
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/738 (39%), Positives = 424/738 (57%), Gaps = 40/738 (5%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM ++YL+E VL NL +RY IYTY+G IAVNP++RLP +Y ++ +Y+G
Sbjct: 85 LEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG------ 138
E+ PH+F+V D AY+ M+ + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 144 RKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKK 203
Query: 139 ---GRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAI 195
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I
Sbjct: 204 DEEASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 262
Query: 196 RTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKS--FHYLNQSNCYELDG 253
TYLLE+SRV ERNYH FY +C+ ++ L +P S + ++NQ C +D
Sbjct: 263 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDN 321
Query: 254 VSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRF 313
+ D E+ A DI+G + +E++++F+ A+ILH+G + F + + + +
Sbjct: 322 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQA---ESDGTA 378
Query: 314 HLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWI 373
A L +A L AL+K + E++T+ + V S ALAK++Y R+F+W+
Sbjct: 379 EAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWL 438
Query: 374 VEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQE 433
V ++N ++ IGVLDI GFE F NSFEQ CIN+TNE+LQQ FN H+F +EQE
Sbjct: 439 VRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQE 498
Query: 434 EYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FA 491
EY +E I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F KL Q
Sbjct: 499 EYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNHMG 557
Query: 492 KNNRFSKP-KLSRTD-----FTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSF 545
KN F+KP K +R + F + HYAG V Y +L+KNKD + ALL A+K
Sbjct: 558 KNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPL 617
Query: 546 VAGXXXXXXXXXXXXXXXXXIGSRFKL-------QLQSLMETLNATAPHYIRCVKPNNVL 598
VA S F+ L LM+ L +T PH++RC+ PN +
Sbjct: 618 VAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELK 677
Query: 599 KPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYDDQV 657
+P + + V+ QL+C GVLE IRI G+P+R + EF R+ ILAP + +G D +
Sbjct: 678 QPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKT 737
Query: 658 ACQMILDKKGLK----GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIAR 713
+ IL GL+ Y++G TKVF +AG + L+ R E L Q R Y+ R
Sbjct: 738 VSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIR 795
Query: 714 KEFILLRNAAVILQSFLR 731
K + L++ + L R
Sbjct: 796 KAYKKLQDQRIGLSVIQR 813
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/738 (39%), Positives = 424/738 (57%), Gaps = 40/738 (5%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM ++YL+E VL NL +RY IYTY+G IAVNP++RLP +Y ++ +Y+G
Sbjct: 80 LEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGK 138
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG------ 138
E+ PH+F+V D AY+ M+ + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 139 RKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKK 198
Query: 139 ---GRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAI 195
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I
Sbjct: 199 DEEASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 257
Query: 196 RTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKS--FHYLNQSNCYELDG 253
TYLLE+SRV ERNYH FY +C+ ++ L +P S + ++NQ C +D
Sbjct: 258 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDN 316
Query: 254 VSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRF 313
+ D E+ A DI+G + +E++++F+ A+ILH+G + F + + + +
Sbjct: 317 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQA---ESDGTA 373
Query: 314 HLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWI 373
A L +A L AL+K + E++T+ + V S ALAK++Y R+F+W+
Sbjct: 374 EAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWL 433
Query: 374 VEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQE 433
V ++N ++ IGVLDI GFE F NSFEQ CIN+TNE+LQQ FN H+F +EQE
Sbjct: 434 VRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQE 493
Query: 434 EYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FA 491
EY +E I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F KL Q
Sbjct: 494 EYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNHMG 552
Query: 492 KNNRFSKP-KLSRTD-----FTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSF 545
KN F+KP K +R + F + HYAG V Y +L+KNKD + ALL A+K
Sbjct: 553 KNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPL 612
Query: 546 VAGXXXXXXXXXXXXXXXXXIGSRFKL-------QLQSLMETLNATAPHYIRCVKPNNVL 598
VA S F+ L LM+ L +T PH++RC+ PN +
Sbjct: 613 VAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELK 672
Query: 599 KPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYDDQV 657
+P + + V+ QL+C GVLE IRI G+P+R + EF R+ ILAP + +G D +
Sbjct: 673 QPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKT 732
Query: 658 ACQMILDKKGLK----GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIAR 713
+ IL GL+ Y++G TKVF +AG + L+ R E L Q R Y+ R
Sbjct: 733 VSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIR 790
Query: 714 KEFILLRNAAVILQSFLR 731
K + L++ + L R
Sbjct: 791 KAYKKLQDQRIGLSVIQR 808
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/738 (39%), Positives = 424/738 (57%), Gaps = 40/738 (5%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM ++YL+E VL NL +RY IYTY+G IAVNP++RLP +Y ++ +Y+G
Sbjct: 81 LEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGK 139
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG------ 138
E+ PH+F+V D AY+ M+ + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 140 RKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKK 199
Query: 139 ---GRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAI 195
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I
Sbjct: 200 DEEASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 258
Query: 196 RTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKS--FHYLNQSNCYELDG 253
TYLLE+SRV ERNYH FY +C+ ++ L +P S + ++NQ C +D
Sbjct: 259 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDN 317
Query: 254 VSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRF 313
+ D E+ A DI+G + +E++++F+ A+ILH+G + F + + + +
Sbjct: 318 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQA---ESDGTA 374
Query: 314 HLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWI 373
A L +A L AL+K + E++T+ + V S ALAK++Y R+F+W+
Sbjct: 375 EAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWL 434
Query: 374 VEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQE 433
V ++N ++ IGVLDI GFE F NSFEQ CIN+TNE+LQQ FN H+F +EQE
Sbjct: 435 VRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQE 494
Query: 434 EYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FA 491
EY +E I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F KL Q
Sbjct: 495 EYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNHMG 553
Query: 492 KNNRFSKP-KLSRTD-----FTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSF 545
KN F+KP K +R + F + HYAG V Y +L+KNKD + ALL A+K
Sbjct: 554 KNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPL 613
Query: 546 VAGXXXXXXXXXXXXXXXXXIGSRFKL-------QLQSLMETLNATAPHYIRCVKPNNVL 598
VA S F+ L LM+ L +T PH++RC+ PN +
Sbjct: 614 VAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELK 673
Query: 599 KPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYDDQV 657
+P + + V+ QL+C GVLE IRI G+P+R + EF R+ ILAP + +G D +
Sbjct: 674 QPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKT 733
Query: 658 ACQMILDKKGLK----GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIAR 713
+ IL GL+ Y++G TKVF +AG + L+ R E L Q R Y+ R
Sbjct: 734 VSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIR 791
Query: 714 KEFILLRNAAVILQSFLR 731
K + L++ + L R
Sbjct: 792 KAYKKLQDQRIGLSVIQR 809
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/738 (39%), Positives = 424/738 (57%), Gaps = 40/738 (5%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM ++YL+E VL NL +RY IYTY+G IAVNP++RLP +Y ++ +Y+G
Sbjct: 85 LEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG------ 138
E+ PH+F+V D AY+ M+ + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 144 RKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKK 203
Query: 139 ---GRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAI 195
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I
Sbjct: 204 DEEASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 262
Query: 196 RTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKS--FHYLNQSNCYELDG 253
TYLLE+SRV ERNYH FY +C+ ++ L +P S + ++NQ C +D
Sbjct: 263 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDN 321
Query: 254 VSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRF 313
+ D E+ A DI+G + +E++++F+ A+ILH+G + F + + + +
Sbjct: 322 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQA---ESDGTA 378
Query: 314 HLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWI 373
A L +A L AL+K + E++T+ + V S ALAK++Y R+F+W+
Sbjct: 379 EAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWL 438
Query: 374 VEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQE 433
V ++N ++ IGVLDI GFE F NSFEQ CIN+TNE+LQQ FN H+F +EQE
Sbjct: 439 VRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQE 498
Query: 434 EYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FA 491
EY +E I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F KL Q
Sbjct: 499 EYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNHMG 557
Query: 492 KNNRFSKP-KLSRTD-----FTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSF 545
KN F+KP K +R + F + HYAG V Y +L+KNKD + ALL A+K
Sbjct: 558 KNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPL 617
Query: 546 VAGXXXXXXXXXXXXXXXXXIGSRFKL-------QLQSLMETLNATAPHYIRCVKPNNVL 598
VA S F+ L LM+ L +T PH++RC+ PN +
Sbjct: 618 VAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELK 677
Query: 599 KPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYDDQV 657
+P + + V+ QL+C GVLE IRI G+P+R + EF R+ ILAP + +G D +
Sbjct: 678 QPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKT 737
Query: 658 ACQMILDKKGLK----GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIAR 713
+ IL GL+ Y++G TKVF +AG + L+ R E L Q R Y+ R
Sbjct: 738 VSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIR 795
Query: 714 KEFILLRNAAVILQSFLR 731
K + L++ + L R
Sbjct: 796 KAYKKLQDQRIGLSVIQR 813
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 505 bits (1300), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/738 (39%), Positives = 424/738 (57%), Gaps = 40/738 (5%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM ++YL+E VL NL +RY IYTY+G IAVNP++RLP +Y ++ +Y+G
Sbjct: 85 LEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG------ 138
E+ PH+F+V D AY+ M+ + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 144 RKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKK 203
Query: 139 ---GRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAI 195
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I
Sbjct: 204 DEEASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 262
Query: 196 RTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKS--FHYLNQSNCYELDG 253
TYLLE+SRV ERNYH FY +C+ ++ L +P S + ++NQ C +D
Sbjct: 263 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDN 321
Query: 254 VSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRF 313
+ D E+ A DI+G + +E++++F+ A+ILH+G + F + + + +
Sbjct: 322 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQA---ESDGTA 378
Query: 314 HLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWI 373
A L +A L AL+K + E++T+ + V S ALAK++Y R+F+W+
Sbjct: 379 EAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWL 438
Query: 374 VEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQE 433
V ++N ++ IGVLDI GFE F NSFEQ CIN+TNE+LQQ FN H+F +EQE
Sbjct: 439 VRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQE 498
Query: 434 EYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FA 491
EY +E I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F KL Q
Sbjct: 499 EYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNHMG 557
Query: 492 KNNRFSKP-KLSRTD-----FTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSF 545
KN F+KP K +R + F + HYAG V Y +L+KNKD + ALL A+K
Sbjct: 558 KNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPL 617
Query: 546 VAGXXXXXXXXXXXXXXXXXIGSRFKL-------QLQSLMETLNATAPHYIRCVKPNNVL 598
VA S F+ L LM+ L +T PH++RC+ PN +
Sbjct: 618 VAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELK 677
Query: 599 KPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYDDQV 657
+P + + V+ QL+C GVLE IRI G+P+R + EF R+ ILAP + +G D +
Sbjct: 678 QPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKT 737
Query: 658 ACQMILDKKGLK----GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIAR 713
+ IL GL+ Y++G TKVF +AG + L+ R E L Q R Y+ R
Sbjct: 738 VSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIR 795
Query: 714 KEFILLRNAAVILQSFLR 731
K + L++ + L R
Sbjct: 796 KAYKKLQDQRIGLSVIQR 813
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 503 bits (1294), Expect = e-142, Method: Compositional matrix adjust.
Identities = 279/704 (39%), Positives = 402/704 (57%), Gaps = 31/704 (4%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + ++ V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 44 INQVFPAEEDSKKD-VEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 102
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 103 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 162
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ ++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 163 VLRYLTESYG----TGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 218
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+
Sbjct: 219 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGGS 278
Query: 249 YELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKD 308
+ + D +++ AM +G+ D+E+ +FRVVA +LHLGNIDF +
Sbjct: 279 LKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLK 338
Query: 309 EKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE-----EVITRTLDPVNAVASRDALAK 363
KS L AELL D L +L RVM+T VI L A +RDALAK
Sbjct: 339 NKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAK 398
Query: 364 TIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHF 423
T+YS LFD +V ++N + S IGVLDI GFE F+ NSFEQFCIN+ NEKLQQ F
Sbjct: 399 TVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 457
Query: 424 NQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFS 483
N+ + K EQE Y +E + + + ++DNQD +DLIE + GI+ +LDE P+ + + F+
Sbjct: 458 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFT 517
Query: 484 QKLCQTFAKNNRFSKPKLS--------RTD--FTILHYAGEVTYQANHFLDKNKDYVVAE 533
+ Q + R S P+ S R D F I H+AG V Y+ F++KN D +
Sbjct: 518 SAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMS 577
Query: 534 HQALLTAAKCSFV------AGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPH 587
++L+ ++ F+ + +G++FK QL L++ L +T
Sbjct: 578 LESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGAS 637
Query: 588 YIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPE 647
+IRC+KPN + FE ++ QL+C G++ + + G+P+R +F+E N + P+
Sbjct: 638 FIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPD 697
Query: 648 VLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELD 689
L D ++ C+ + GL Y+ G TKVF R G+ AE D
Sbjct: 698 KL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 740
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 503 bits (1294), Expect = e-142, Method: Compositional matrix adjust.
Identities = 279/704 (39%), Positives = 402/704 (57%), Gaps = 31/704 (4%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + ++ V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 45 INQVFPAEEDSKKD-VEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 103
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 104 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 163
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ ++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 164 VLRYLTESYG----TGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 219
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+
Sbjct: 220 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGGS 279
Query: 249 YELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKD 308
+ + D +++ AM +G+ D+E+ +FRVVA +LHLGNIDF +
Sbjct: 280 LKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLK 339
Query: 309 EKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE-----EVITRTLDPVNAVASRDALAK 363
KS L AELL D L +L RVM+T VI L A +RDALAK
Sbjct: 340 NKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAK 399
Query: 364 TIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHF 423
T+YS LFD +V ++N + S IGVLDI GFE F+ NSFEQFCIN+ NEKLQQ F
Sbjct: 400 TVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 458
Query: 424 NQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFS 483
N+ + K EQE Y +E + + + ++DNQD +DLIE + GI+ +LDE P+ + + F+
Sbjct: 459 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFT 518
Query: 484 QKLCQTFAKNNRFSKPKLS--------RTD--FTILHYAGEVTYQANHFLDKNKDYVVAE 533
+ Q + R S P+ S R D F I H+AG V Y+ F++KN D +
Sbjct: 519 SAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMS 578
Query: 534 HQALLTAAKCSFV------AGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPH 587
++L+ ++ F+ + +G++FK QL L++ L +T
Sbjct: 579 LESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGAS 638
Query: 588 YIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPE 647
+IRC+KPN + FE ++ QL+C G++ + + G+P+R +F+E N + P+
Sbjct: 639 FIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPD 698
Query: 648 VLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELD 689
L D ++ C+ + GL Y+ G TKVF R G+ AE D
Sbjct: 699 KL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 741
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust.
Identities = 279/704 (39%), Positives = 401/704 (56%), Gaps = 31/704 (4%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + ++ V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 44 INQVFPAEEDSKKD-VEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 102
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 103 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 162
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ + +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 163 VLRYLTESYG----TGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 218
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+
Sbjct: 219 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGGS 278
Query: 249 YELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKD 308
+ + D +++ AM +G+ D+E+ +FRVVA +LHLGNIDF +
Sbjct: 279 LKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLK 338
Query: 309 EKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE-----EVITRTLDPVNAVASRDALAK 363
KS L AELL D L +L RVM+T VI L A +RDALAK
Sbjct: 339 NKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAK 398
Query: 364 TIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHF 423
T+YS LFD +V ++N + S IGVLDI GFE F+ NSFEQFCIN+ NEKLQQ F
Sbjct: 399 TVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 457
Query: 424 NQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFS 483
N+ + K EQE Y +E + + + ++DNQD +DLIE + GI+ +LDE P+ + + F+
Sbjct: 458 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFT 517
Query: 484 QKLCQTFAKNNRFSKPKLS--------RTD--FTILHYAGEVTYQANHFLDKNKDYVVAE 533
+ Q + R S P+ S R D F I H+AG V Y+ F++KN D +
Sbjct: 518 SAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMS 577
Query: 534 HQALLTAAKCSFV------AGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPH 587
++L+ ++ F+ + +G++FK QL L++ L +T
Sbjct: 578 LESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGAS 637
Query: 588 YIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPE 647
+IRC+KPN + FE ++ QL+C G++ + + G+P+R +F+E N + P+
Sbjct: 638 FIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPD 697
Query: 648 VLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELD 689
L D ++ C+ + GL Y+ G TKVF R G+ AE D
Sbjct: 698 KL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 740
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 493 bits (1270), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/742 (38%), Positives = 422/742 (56%), Gaps = 45/742 (6%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM ++YL+E VL NL RY IYTY+G IAVNP++RLP +Y ++ +Y+G
Sbjct: 85 LEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE 144
E+ PH+F+V D AY+ M+ + ++ S L++GESGAGKTE TK ++ YLA + V+
Sbjct: 144 RKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVA--CAVK 201
Query: 145 GRT------------VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISG 192
+T +E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+G
Sbjct: 202 KKTSEEEEADQKKGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAG 261
Query: 193 AAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKS--FHYLNQSNCYE 250
A I TYLLE+SRV ERNYH FY +C+ ++ + L +P S + ++NQ C
Sbjct: 262 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNEVMLITPDSGLYSFINQG-CLT 320
Query: 251 LDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEK 310
+D + D E+ A DI+G + +E+ ++F+ A+ILH+G + F + + + +
Sbjct: 321 VDNIDDVEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGEMKFKQRPREEQA---ESD 377
Query: 311 SRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLF 370
A L +A L AL+K + E++T+ + + S AL+K++Y R+F
Sbjct: 378 GTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNLQQVINSVGALSKSLYDRMF 437
Query: 371 DWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKM 430
+W+V+++N ++ IGVLDI GFE F NSFEQ CIN+TNE+LQQ FN H+F +
Sbjct: 438 NWLVKRVNRTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVL 497
Query: 431 EQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT 489
EQEEY +E I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F Q
Sbjct: 498 EQEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDYSYQN 556
Query: 490 -FAKNNRFSKP-KLSRTD-----FTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAK 542
KN F+KP K +R + F + HYAG V Y +LDKNKD + +LL +K
Sbjct: 557 HIGKNRMFTKPGKPTRPNQGHAHFELHHYAGNVPYSIAGWLDKNKDPINENVVSLLAVSK 616
Query: 543 CSFVA--------GXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKP 594
VA I + + L LM+ L +T PH++RC+ P
Sbjct: 617 EPLVAELFRAPDEPAGGAGGKKKKKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIP 676
Query: 595 NNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNY 653
N + +P + + V+ QL+C GVLE IRI G+P+R + EF R+ ILAP + +G
Sbjct: 677 NELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFV 736
Query: 654 DDQVACQMILDKKGLK----GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRT 709
D + + IL GL+ Y++G TKVF +AG + L+ R E L Q R
Sbjct: 737 DGKTVSEKIL--TGLQMDPSEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRG 794
Query: 710 YIARKEFILLRNAAVILQSFLR 731
Y+ RK + L++ + L R
Sbjct: 795 YLIRKAYKKLQDQRIGLSVIQR 816
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 493 bits (1269), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/730 (38%), Positives = 404/730 (55%), Gaps = 57/730 (7%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + ++ V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 44 INQVFPAEEDSKKD-VEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 102
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 103 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 162
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ ++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 163 VLRYLTESYG----TGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 218
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLN---- 244
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN
Sbjct: 219 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCT 278
Query: 245 ----------------------QSNCYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFR 282
++ + G+ D +++ AM +G+ D+E+ +FR
Sbjct: 279 RYFANKETDKQILQNRKSPEYLKAGSLKDPGLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 338
Query: 283 VVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 342
VVA +LHLGNIDF + KS L AELL D L +L RVM+T
Sbjct: 339 VVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTA 398
Query: 343 -----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIY 397
VI L A +RDALAKT+YS LFD +V ++N + S IGVLDI
Sbjct: 399 GGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDIA 457
Query: 398 GFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLI 457
GFE F+ NSFEQFCIN+ NEKLQQ FN+ + K EQE Y +E + + + ++DNQD +DLI
Sbjct: 458 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 517
Query: 458 EKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS--------RTD--FT 507
E + GI+ +LDE P+ + + F+ + Q + R S P+ S R D F
Sbjct: 518 EARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFI 577
Query: 508 ILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFV------AGXXXXXXXXXXXXX 561
I H+AG V Y+ F++KN D + ++L+ ++ F+ +
Sbjct: 578 IRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKL 637
Query: 562 XXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAI 621
+G++FK QL L++ L +T +IRC+KPN + FE ++ QL+C G++ +
Sbjct: 638 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 697
Query: 622 RISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVF 679
+ G+P+R +F+E N + P+ L D ++ C+ + GL Y+ G TKVF
Sbjct: 698 DLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVF 756
Query: 680 LRAGQMAELD 689
R G+ AE D
Sbjct: 757 FRPGKFAEFD 766
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 493 bits (1268), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/739 (38%), Positives = 416/739 (56%), Gaps = 40/739 (5%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM ++YL+E VL NL RY IYTY+G IAVNP++RLP +Y ++ +Y+G
Sbjct: 85 LEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGR---- 140
E+ PH+F+V D AY+ M+ + ++ S L++GESGAGKTE+TK ++ Y A +
Sbjct: 144 RKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTESTKKVIMYFARVAANLYKQ 203
Query: 141 -----SGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAI 195
+ +E Q++E+NPVLEAFGNAKTVRNNNSSRFGKF+ I F G+I+GA I
Sbjct: 204 KEEPVPNLRASNLEDQIIEANPVLEAFGNAKTVRNNNSSRFGKFIRIHFGPTGKIAGADI 263
Query: 196 RTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKS--FHYLNQSNCYELDG 253
TYLLE+SRV ERNYH FY +C+ ++ + L +P S + ++NQ C +D
Sbjct: 264 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNEVMLITPDSGLYSFINQG-CLTVDN 322
Query: 254 VSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRF 313
+ D E+ A DI+G + +E+ ++F+ A+ILH+G + F + + + +
Sbjct: 323 IDDVEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGEMKFKQRPREEQA---ESDGTA 379
Query: 314 HLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWI 373
A L +A L AL+K + E++T+ + + S AL+K++Y R+F+W+
Sbjct: 380 EAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNLQQVINSVGALSKSLYDRMFNWL 439
Query: 374 VEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQE 433
V+++N ++ IGVLDI GFE F NSFEQ CIN+TNE+LQQ FN H+F +EQE
Sbjct: 440 VKRVNRTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQE 499
Query: 434 EYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FA 491
EY +E I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F Q
Sbjct: 500 EYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDYSYQNHIG 558
Query: 492 KNNRFSKP-KLSRTD-----FTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSF 545
KN F+KP K +R + F + HYAG V Y +LDKNKD + +LL +K
Sbjct: 559 KNRMFTKPGKPTRPNQGHAHFELHHYAGNVPYSIAGWLDKNKDPINENVVSLLAVSKEPL 618
Query: 546 VA--------GXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNV 597
VA I + + L LM L T PH++RC+ PN
Sbjct: 619 VAELFRAPDEPAGGAGGKKKKKSSAFQTISAVHRESLNKLMCNLRRTNPHFVRCIIPNLE 678
Query: 598 LKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYDDQ 656
P + + V+ QL+C GVLE IRI G+P+R + EF R+ ILAP + +G D +
Sbjct: 679 KDPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGK 738
Query: 657 VACQMILDKKGLK----GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIA 712
+ IL GL+ Y++G TKVF +AG + L+ R E L Q R Y+
Sbjct: 739 TVSEKIL--TGLQMDPSEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLI 796
Query: 713 RKEFILLRNAAVILQSFLR 731
RK + L++ + L R
Sbjct: 797 RKAYKKLQDQRIGLSVIQR 815
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 297/808 (36%), Positives = 434/808 (53%), Gaps = 72/808 (8%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + E V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 45 INQVFPAE-EDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 103
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 104 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 163
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ ++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 164 VLRYLTESYG----TGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 219
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+ C
Sbjct: 220 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRG-C 278
Query: 249 YEL--------------------------DGVSDAH-EYLATRRAMDIVGISDQEQEAIF 281
D + D H +++ AM +G+ D+E+ +F
Sbjct: 279 TRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 338
Query: 282 RVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 341
RVVA +LHLGNIDF + KS L AELL D L +L RVM+T
Sbjct: 339 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTT 398
Query: 342 E-----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDI 396
VI L A +RDALAKT+YS LFD +V ++N + S IGVLDI
Sbjct: 399 AGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDI 457
Query: 397 YGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDL 456
GFE F+ NSFEQFCIN+ NEKLQQ FN+ + K EQE Y +E + + + ++DNQD +DL
Sbjct: 458 AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDL 517
Query: 457 IEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS--------RTD--F 506
IE + GI+ +LDE P+ + + F+ + Q + R S P+ S R D F
Sbjct: 518 IEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGF 577
Query: 507 TILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFV------AGXXXXXXXXXXXX 560
I H+AG V Y+ F++KN D + ++L+ ++ F+ +
Sbjct: 578 IIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGK 637
Query: 561 XXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEA 620
+G++FK QL L++ L +T +IRC+KPN + FE ++ QL+C G++
Sbjct: 638 LSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSV 697
Query: 621 IRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKV 678
+ + G+P+R +F+E N + P+ L D ++ C+ + GL Y+ G TKV
Sbjct: 698 LDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKV 756
Query: 679 FLRAGQMAELDARRAEVLGNAARKIQRQTRTYI-ARKEFILLRNAAVILQSFLRGEMARK 737
F R G+ AE D + A ++R I +R + + + +VI K
Sbjct: 757 FFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKKVQWCSLSVI-----------K 805
Query: 738 LYEQLR-REAAALKIQTNFRAYVAQRSY 764
L +++ R A +K+Q R ++ +R +
Sbjct: 806 LKNKIKYRAEACIKMQKTIRMWLCKRRH 833
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust.
Identities = 287/755 (38%), Positives = 424/755 (56%), Gaps = 49/755 (6%)
Query: 27 DMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAF 86
DM L++L+E +L NL +RYE IYTY+G IA+NP++RLP +Y ++++Y+G
Sbjct: 87 DMANLTFLNEASILHNLRSRYESGFIYTYSGLFCIAINPYRRLP-IYTQGLVDKYRGKRR 145
Query: 87 GELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGR------ 140
E+ PH+F++ D AY+ M+ + ++ S+L++GESGAGKTE TK +++Y A +
Sbjct: 146 AEMPPHLFSIADNAYQYMLQDRENQSMLITGESGAGKTENTKKVIQYFALVAASLAGKKD 205
Query: 141 -------SGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGA 193
+ T+E Q+++ NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA
Sbjct: 206 KKEEEKKKDEKKGTLEDQIVQCNPVLEAYGNAKTTRNNNSSRFGKFIRIHFGTQGKIAGA 265
Query: 194 AIRTYLLERSRVCQISDPERNYHCFY-LLCAAPHEDIAK-YKLGSPKSFHYLNQSNCYEL 251
I TYLLE+SRV ERNYH FY LL A E+I K + P + ++NQ +
Sbjct: 266 DIETYLLEKSRVTYQQSAERNYHIFYQLLSPAFPENIEKILAVPDPGLYGFINQGTL-TV 324
Query: 252 DGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFA-KGKEIDS-SVIKDE 309
DG+ D E T A D++G +D+E+ ++++ ILHLG + + +G++ ++ + E
Sbjct: 325 DGIDDEEEMGLTDTAFDVLGFTDEEKLSMYKCTGCILHLGEMKWKQRGEQAEADGTAEAE 384
Query: 310 KSRFHLNMTA-ELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSR 368
K F L + A +LL+C L+K + E +T+ + S ALAK++Y R
Sbjct: 385 KVAFLLGVNAGDLLKC--------LLKPKIKVGTEYVTQGRNKDQVTNSIAALAKSLYDR 436
Query: 369 LFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVF 428
+F+W+V ++N ++ + IGVLDI GFE F NSFEQ CIN+TNE+LQQ FN H+F
Sbjct: 437 MFNWLVRRVNQTLDTKAKRQFFIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMF 496
Query: 429 KMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLC 487
+EQEEY +E I W +I+F +D Q ++LIE KP GI+++L+E CMFPK++ +F KL
Sbjct: 497 VLEQEEYKKEGIVWEFIDFGLDLQACIELIE-KPMGILSILEEECMFPKASDTSFKNKLY 555
Query: 488 QT-FAKNNRFSKPK-----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAA 541
KN F KPK + F + HYAG V+Y +LDKNKD + LL +
Sbjct: 556 DNHLGKNPMFGKPKPPKAGCAEAHFCLHHYAGSVSYSIAGWLDKNKDPINENVVELLQNS 615
Query: 542 KCSFVAG-------XXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKP 594
K V I S K L LM+ L +T PH++RC+ P
Sbjct: 616 KEPIVKMLFTPPRILTPGGKKKKGKSAAFQTISSVHKESLNKLMKNLYSTHPHFVRCIIP 675
Query: 595 NNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNY- 653
N + P + + V+ QLRC GVLE IRI G+P R + EF R+ ILAP + +
Sbjct: 676 NELKTPGLIDAALVLHQLRCNGVLEGIRICRKGFPNRIIYSEFKQRYSILAPNAVPSGFA 735
Query: 654 DDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYI 711
D +V L L Y++G TKVF +AG + L+ R E L Q R Y+
Sbjct: 736 DGKVVTDKALSALQLDPNEYRLGNTKVFFKAGVLGMLEDMRDERLSKIISMFQAHIRGYL 795
Query: 712 ARKEFILLRNAAV---ILQSFLRGEMARKLYEQLR 743
RK + L++ + ++Q +R + + +E R
Sbjct: 796 MRKAYKKLQDQRIGLTLIQRNVRKWLVLRNWEWWR 830
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/731 (38%), Positives = 403/731 (55%), Gaps = 59/731 (8%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + E V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 54 INQVFPAE-EDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 112
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 113 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 172
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ ++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 173 VLRYLTESYG----TGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 228
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+ C
Sbjct: 229 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRG-C 287
Query: 249 YEL--------------------------DGVSDAH-EYLATRRAMDIVGISDQEQEAIF 281
D + D H +++ AM +G+ D+E+ +F
Sbjct: 288 TRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 347
Query: 282 RVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 341
RVVA +LHLGNIDF + KS L AELL D L +L RVM+T
Sbjct: 348 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTT 407
Query: 342 E-----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDI 396
VI L A +RDALAKT+YS LFD +V ++N + S IGVLDI
Sbjct: 408 AGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDI 466
Query: 397 YGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDL 456
GFE F+ NSFEQFCIN+ NEKLQQ FN+ + K EQE Y +E + + + ++DNQD +DL
Sbjct: 467 AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDL 526
Query: 457 IEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS--------RTD--F 506
IE + GI+ +LDE P+ + + F+ + Q + R S P+ S R D F
Sbjct: 527 IEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHENIRDDEGF 586
Query: 507 TILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFV------AGXXXXXXXXXXXX 560
I H+AG V Y+ F++KN D + ++L+ ++ F+ +
Sbjct: 587 IIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGK 646
Query: 561 XXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEA 620
+G++FK QL L++ L +T +IRC+KPN + FE ++ QL+C G++
Sbjct: 647 LSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSV 706
Query: 621 IRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKV 678
+ + G+P+R +F+E N + P+ L D ++ C+ + GL Y+ G TKV
Sbjct: 707 LDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKV 765
Query: 679 FLRAGQMAELD 689
F R G+ AE D
Sbjct: 766 FFRPGKFAEFD 776
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/731 (38%), Positives = 403/731 (55%), Gaps = 59/731 (8%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + E V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 41 INQVFPAE-EDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 99
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 100 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 159
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ ++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 160 VLRYLTESYG----TGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 215
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+ C
Sbjct: 216 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRG-C 274
Query: 249 YEL--------------------------DGVSDAH-EYLATRRAMDIVGISDQEQEAIF 281
D + D H +++ AM +G+ D+E+ +F
Sbjct: 275 TRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 334
Query: 282 RVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 341
RVVA +LHLGNIDF + KS L AELL D L +L RVM+T
Sbjct: 335 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTT 394
Query: 342 E-----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDI 396
VI L A +RDALAKT+YS LFD +V ++N + S IGVLDI
Sbjct: 395 AGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDI 453
Query: 397 YGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDL 456
GFE F+ NSFEQFCIN+ NEKLQQ FN+ + K EQE Y +E + + + ++DNQD +DL
Sbjct: 454 AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDL 513
Query: 457 IEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS--------RTD--F 506
IE + GI+ +LDE P+ + + F+ + Q + R S P+ S R D F
Sbjct: 514 IEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGF 573
Query: 507 TILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFV------AGXXXXXXXXXXXX 560
I H+AG V Y+ F++KN D + ++L+ ++ F+ +
Sbjct: 574 IIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGK 633
Query: 561 XXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEA 620
+G++FK QL L++ L +T +IRC+KPN + FE ++ QL+C G++
Sbjct: 634 LSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSV 693
Query: 621 IRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKV 678
+ + G+P+R +F+E N + P+ L D ++ C+ + GL Y+ G TKV
Sbjct: 694 LDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKV 752
Query: 679 FLRAGQMAELD 689
F R G+ AE D
Sbjct: 753 FFRPGKFAEFD 763
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/731 (38%), Positives = 403/731 (55%), Gaps = 59/731 (8%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + E V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 44 INQVFPAE-EDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 102
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 103 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 162
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ ++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 163 VLRYLTESYG----TGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 218
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+ C
Sbjct: 219 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRG-C 277
Query: 249 YEL--------------------------DGVSDAH-EYLATRRAMDIVGISDQEQEAIF 281
D + D H +++ AM +G+ D+E+ +F
Sbjct: 278 TRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 337
Query: 282 RVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 341
RVVA +LHLGNIDF + KS L AELL D L +L RVM+T
Sbjct: 338 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTT 397
Query: 342 E-----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDI 396
VI L A +RDALAKT+YS LFD +V ++N + S IGVLDI
Sbjct: 398 AGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDI 456
Query: 397 YGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDL 456
GFE F+ NSFEQFCIN+ NEKLQQ FN+ + K EQE Y +E + + + ++DNQD +DL
Sbjct: 457 AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDL 516
Query: 457 IEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS--------RTD--F 506
IE + GI+ +LDE P+ + + F+ + Q + R S P+ S R D F
Sbjct: 517 IEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGF 576
Query: 507 TILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFV------AGXXXXXXXXXXXX 560
I H+AG V Y+ F++KN D + ++L+ ++ F+ +
Sbjct: 577 IIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGK 636
Query: 561 XXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEA 620
+G++FK QL L++ L +T +IRC+KPN + FE ++ QL+C G++
Sbjct: 637 LSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSV 696
Query: 621 IRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKV 678
+ + G+P+R +F+E N + P+ L D ++ C+ + GL Y+ G TKV
Sbjct: 697 LDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKV 755
Query: 679 FLRAGQMAELD 689
F R G+ AE D
Sbjct: 756 FFRPGKFAEFD 766
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/731 (38%), Positives = 403/731 (55%), Gaps = 59/731 (8%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + E V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 54 INQVFPAE-EDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 112
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 113 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 172
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ ++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 173 VLRYLTESYG----TGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 228
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+ C
Sbjct: 229 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRG-C 287
Query: 249 YEL--------------------------DGVSDAH-EYLATRRAMDIVGISDQEQEAIF 281
D + D H +++ AM +G+ D+E+ +F
Sbjct: 288 TRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 347
Query: 282 RVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 341
RVVA +LHLGNIDF + KS L AELL D L +L RVM+T
Sbjct: 348 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTT 407
Query: 342 E-----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDI 396
VI L A +RDALAKT+YS LFD +V ++N + S IGVLDI
Sbjct: 408 AGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDI 466
Query: 397 YGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDL 456
GFE F+ NSFEQFCIN+ NEKLQQ FN+ + K EQE Y +E + + + ++DNQD +DL
Sbjct: 467 AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDL 526
Query: 457 IEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS--------RTD--F 506
IE + GI+ +LDE P+ + + F+ + Q + R S P+ S R D F
Sbjct: 527 IEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGF 586
Query: 507 TILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFV------AGXXXXXXXXXXXX 560
I H+AG V Y+ F++KN D + ++L+ ++ F+ +
Sbjct: 587 IIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGK 646
Query: 561 XXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEA 620
+G++FK QL L++ L +T +IRC+KPN + FE ++ QL+C G++
Sbjct: 647 LSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSV 706
Query: 621 IRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKV 678
+ + G+P+R +F+E N + P+ L D ++ C+ + GL Y+ G TKV
Sbjct: 707 LDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKV 765
Query: 679 FLRAGQMAELD 689
F R G+ AE D
Sbjct: 766 FFRPGKFAEFD 776
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/731 (38%), Positives = 402/731 (54%), Gaps = 59/731 (8%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + E V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 44 INQVFPAE-EDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 102
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 103 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 162
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ + +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 163 VLRYLTESYG----TGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 218
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+ C
Sbjct: 219 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRG-C 277
Query: 249 YEL--------------------------DGVSDAH-EYLATRRAMDIVGISDQEQEAIF 281
D + D H +++ AM +G+ D+E+ +F
Sbjct: 278 TRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 337
Query: 282 RVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 341
RVVA +LHLGNIDF + KS L AELL D L +L RVM+T
Sbjct: 338 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTT 397
Query: 342 E-----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDI 396
VI L A +RDALAKT+YS LFD +V ++N + S IGVLDI
Sbjct: 398 AGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDI 456
Query: 397 YGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDL 456
GFE F+ NSFEQFCIN+ NEKLQQ FN+ + K EQE Y +E + + + ++DNQD +DL
Sbjct: 457 AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDL 516
Query: 457 IEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS--------RTD--F 506
IE + GI+ +LDE P+ + + F+ + Q + R S P+ S R D F
Sbjct: 517 IEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGF 576
Query: 507 TILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFV------AGXXXXXXXXXXXX 560
I H+AG V Y+ F++KN D + ++L+ ++ F+ +
Sbjct: 577 IIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGK 636
Query: 561 XXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEA 620
+G++FK QL L++ L +T +IRC+KPN + FE ++ QL+C G++
Sbjct: 637 LSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSV 696
Query: 621 IRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKV 678
+ + G+P+R +F+E N + P+ L D ++ C+ + GL Y+ G TKV
Sbjct: 697 LDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKV 755
Query: 679 FLRAGQMAELD 689
F R G+ AE D
Sbjct: 756 FFRPGKFAEFD 766
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/731 (38%), Positives = 404/731 (55%), Gaps = 59/731 (8%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + ++ V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 45 INQVFPAEEDSKKD-VEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 103
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 104 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 163
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL S G+ ++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 164 VLRYLT----ESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 219
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+ C
Sbjct: 220 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRG-C 278
Query: 249 YEL--------------------------DGVSDAH-EYLATRRAMDIVGISDQEQEAIF 281
D + D H +++ AM +G+ D+E+ +F
Sbjct: 279 TRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 338
Query: 282 RVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 341
RVVA +LHLGNIDF + KS L AELL D L +L RVM+T
Sbjct: 339 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTT 398
Query: 342 E-----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDI 396
VI L A +RDALAKT+YS LFD +V ++N + S IGVLDI
Sbjct: 399 AGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDI 457
Query: 397 YGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDL 456
GFE F+ NSFEQFCIN+ NEKLQQ FN+ + K EQE Y +E + + + ++DNQD +DL
Sbjct: 458 AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDL 517
Query: 457 IEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS--------RTD--F 506
IE + GI+ +LDE P+ + + F+ + Q + R S P+ S R D F
Sbjct: 518 IEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGF 577
Query: 507 TILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFV------AGXXXXXXXXXXXX 560
I H+AG V Y+ F++KN D + ++L+ ++ F+ +
Sbjct: 578 IIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGK 637
Query: 561 XXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEA 620
+G++FK QL L++ L +T +IRC+KPN + FE ++ QL+C G++
Sbjct: 638 LSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSV 697
Query: 621 IRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKV 678
+ + G+P+R +F+E N + P+ L D ++ C+ + GL Y+ G TKV
Sbjct: 698 LDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKV 756
Query: 679 FLRAGQMAELD 689
F R G+ AE D
Sbjct: 757 FFRPGKFAEFD 767
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/731 (38%), Positives = 403/731 (55%), Gaps = 59/731 (8%)
Query: 10 VSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRL 69
+++VFP + ++ V+D L YL+E +L N+ RY + IYTY NILIAVNP+ +
Sbjct: 42 INQVFPAEEDSKKD-VEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDI 100
Query: 70 PHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKM 129
P +Y + ++ Y+G + G + PHVFA+ D A+R M S SI+VSGESGAGKTE TK
Sbjct: 101 PKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 160
Query: 130 LMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGR 189
++RYL G G+ + +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F++
Sbjct: 161 VLRYLTESYG----TGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSS 216
Query: 190 ISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDI-AKYKLGSPKSFHYLNQSNC 248
+ G + YLLE+SR+C ERNYH FY LCA EDI + L SP +F YLN+ C
Sbjct: 217 VVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRG-C 275
Query: 249 YEL--------------------------DGVSDAH-EYLATRRAMDIVGISDQEQEAIF 281
D + D H +++ AM +G+ D+E+ +F
Sbjct: 276 TRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 335
Query: 282 RVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 341
RVVA +LHLGNIDF + KS L AELL D L +L RVM+T
Sbjct: 336 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTT 395
Query: 342 E-----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDI 396
VI L A +RDALAKT+YS LFD +V ++N + S IGVLDI
Sbjct: 396 AGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFET-SSYFIGVLDI 454
Query: 397 YGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDL 456
GFE F+ NSFEQFCIN+ NEKLQQ FN+ + K EQE Y +E + + + ++DNQD +DL
Sbjct: 455 AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDL 514
Query: 457 IEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS--------RTD--F 506
IE + GI+ +LDE P+ + + F+ + Q + R S P+ S R D F
Sbjct: 515 IEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGF 574
Query: 507 TILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFV------AGXXXXXXXXXXXX 560
I H+AG V Y+ F++KN D + ++L+ ++ F+ +
Sbjct: 575 IIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGK 634
Query: 561 XXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEA 620
+G++FK QL L++ L +T +IRC+KPN + FE ++ QL+C G++
Sbjct: 635 LSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSV 694
Query: 621 IRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKV 678
+ + G+P+R +F+E N + P+ L D ++ C+ + GL Y+ G TKV
Sbjct: 695 LDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKV 753
Query: 679 FLRAGQMAELD 689
F R G+ AE D
Sbjct: 754 FFRPGKFAEFD 764
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 282/737 (38%), Positives = 413/737 (56%), Gaps = 55/737 (7%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
V+DM +L+ L+E VL NL RY IYTY+G + +NP+++LP +Y +++ YKG
Sbjct: 85 VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE 144
E+ PH++A+ D AYR+M+ + + SIL +GESGAGKTE TK +++YLA + +
Sbjct: 144 KRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGK 203
Query: 145 GRT------------VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISG 192
T +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I G
Sbjct: 204 KDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 263
Query: 193 AAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAK-YKLGSPKSFHYLNQSNCYEL 251
A I TYLLE+SR + + ER +H FY L A E + L ++ +L+ + +
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PI 322
Query: 252 DGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKS 311
D + T AM I+G +++EQ +I RVV+++L LGNI F K + D + + D
Sbjct: 323 PAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN-- 380
Query: 312 RFHLNMTAELLRCDAQSLEDALIKRVMVTP-----EEVITRTLDPVNAVASRDALAKTIY 366
TA C + R ++TP +V+ + A + +ALAK +
Sbjct: 381 ------TAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKF 434
Query: 367 SRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQ 425
RLF WI+ ++N ++ + S +G+LDI GFE F+ NSFEQ CIN+TNEKLQQ FN
Sbjct: 435 ERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNH 494
Query: 426 HVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETF 482
+F +EQEEY RE I W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F
Sbjct: 495 TMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSF 554
Query: 483 SQKLCQTFAKNNRFSKPKL--SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTA 540
+KL Q + +F K K +T+F ILHYAG+VTY A+ +L KN D + +LL
Sbjct: 555 VEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQ 614
Query: 541 AKCSFVAG------------------XXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLN 582
+ FVA +G +K QL LM TL
Sbjct: 615 SSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLR 674
Query: 583 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFG 642
T P+++RC+ PN+ + + V++QLRC GVLE IRI G+P R F EF R+
Sbjct: 675 NTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 734
Query: 643 ILAPEVL-EGNYDDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVLGNA 699
ILA + +G D + AC +++ L Y+IG++K+F R G +A L+ R + +
Sbjct: 735 ILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDV 794
Query: 700 ARKIQRQTRTYIARKEF 716
Q Q R Y+ARK F
Sbjct: 795 IIAFQAQCRGYLARKAF 811
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 302/853 (35%), Positives = 460/853 (53%), Gaps = 90/853 (10%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
V+DM +L+ L+E VL NL RY IYTY+G + +NP+++LP +Y +++ YKG
Sbjct: 85 VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE 144
E+ PH++A+ D AYR+M+ + + SIL +GESGAGKTE TK +++YLA + +
Sbjct: 144 KRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGK 203
Query: 145 GRT------------VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISG 192
T +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I G
Sbjct: 204 KDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 263
Query: 193 AAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAK-YKLGSPKSFHYLNQSNCYEL 251
A I TYLLE+SR + + ER +H FY L A E + L ++ +L+ + +
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PI 322
Query: 252 DGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKS 311
D + T AM I+G +++EQ +I RVV+++L LGNI F K + D + + D
Sbjct: 323 PAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN-- 380
Query: 312 RFHLNMTAELLRCDAQSLEDALIKRVMVTP-----EEVITRTLDPVNAVASRDALAKTIY 366
TA C + R ++TP +V+ + A + +ALAK +
Sbjct: 381 ------TAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKF 434
Query: 367 SRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQ 425
RLF WI+ ++N ++ + S +G+LDI GFE F+ NSFEQ CIN+TNEKLQQ FN
Sbjct: 435 ERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNH 494
Query: 426 HVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETF 482
+F +EQEEY RE I W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F
Sbjct: 495 TMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSF 554
Query: 483 SQKLCQTFAKNNRFSKPKL--SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTA 540
+KL Q + +F K K +T+F ILHYAG+VTY A+ +L KN D + +LL
Sbjct: 555 VEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQ 614
Query: 541 AKCSFVAG------------------XXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLN 582
+ FVA +G +K QL LM TL
Sbjct: 615 SSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLR 674
Query: 583 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFG 642
T P+++RC+ PN+ + + V++QLRC GVLE IRI G+P R F EF R+
Sbjct: 675 NTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 734
Query: 643 ILAPEVL-EGNYDDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVLGNA 699
ILA + +G D + AC +++ L Y+IG++K+F R G +A L+ R + +
Sbjct: 735 ILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDV 794
Query: 700 ARKIQRQTRTYIARKEF-----------ILLRNAAVILQSFLRGEMARKLYEQLR----- 743
Q Q R Y+ARK F ++ RN A L+ LR +L+ +++
Sbjct: 795 IIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAYLK--LRNWQWWRLFTKVKPLLQS 852
Query: 744 ----REAAALK-----IQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTK 794
+E A++K ++ A+R L + +++ + +N+ +L+ + +
Sbjct: 853 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQE--------KNDLQLQVQAE 904
Query: 795 AAIIAQAQWRCHQ 807
+A A+ RC Q
Sbjct: 905 QDNLADAEERCDQ 917
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 302/853 (35%), Positives = 460/853 (53%), Gaps = 90/853 (10%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
V+DM +L+ L+E VL NL RY IYTY+G + +NP+++LP +Y +++ YKG
Sbjct: 85 VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE 144
E+ PH++A+ D AYR+M+ + + SIL +GESGAGKTE TK +++YLA + +
Sbjct: 144 KRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGK 203
Query: 145 GRT------------VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISG 192
T +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I G
Sbjct: 204 KDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 263
Query: 193 AAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAK-YKLGSPKSFHYLNQSNCYEL 251
A I TYLLE+SR + + ER +H FY L A E + L ++ +L+ + +
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PI 322
Query: 252 DGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKS 311
D + T AM I+G +++EQ +I RVV+++L LGNI F K + D + + D
Sbjct: 323 PAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN-- 380
Query: 312 RFHLNMTAELLRCDAQSLEDALIKRVMVTP-----EEVITRTLDPVNAVASRDALAKTIY 366
TA C + R ++TP +V+ + A + +ALAK +
Sbjct: 381 ------TAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKF 434
Query: 367 SRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQ 425
RLF WI+ ++N ++ + S +G+LDI GFE F+ NSFEQ CIN+TNEKLQQ FN
Sbjct: 435 ERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNH 494
Query: 426 HVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETF 482
+F +EQEEY RE I W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F
Sbjct: 495 TMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSF 554
Query: 483 SQKLCQTFAKNNRFSKPKL--SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTA 540
+KL Q + +F K K +T+F ILHYAG+VTY A+ +L KN D + +LL
Sbjct: 555 VEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQ 614
Query: 541 AKCSFVAG------------------XXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLN 582
+ FVA +G +K QL LM TL
Sbjct: 615 SSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLR 674
Query: 583 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFG 642
T P+++RC+ PN+ + + V++QLRC GVLE IRI G+P R F EF R+
Sbjct: 675 NTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 734
Query: 643 ILAPEVL-EGNYDDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVLGNA 699
ILA + +G D + AC +++ L Y+IG++K+F R G +A L+ R + +
Sbjct: 735 ILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDV 794
Query: 700 ARKIQRQTRTYIARKEF-----------ILLRNAAVILQSFLRGEMARKLYEQLR----- 743
Q Q R Y+ARK F ++ RN A L+ LR +L+ +++
Sbjct: 795 IIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAYLK--LRNWQWWRLFTKVKPLLQS 852
Query: 744 ----REAAALK-----IQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTK 794
+E A++K ++ A+R L + +++ + +N+ +L+ + +
Sbjct: 853 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQE--------KNDLQLQVQAE 904
Query: 795 AAIIAQAQWRCHQ 807
+A A+ RC Q
Sbjct: 905 QDNLADAEERCDQ 917
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 485 bits (1249), Expect = e-137, Method: Compositional matrix adjust.
Identities = 289/775 (37%), Positives = 428/775 (55%), Gaps = 68/775 (8%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
V+DM +L+ L+E VL NL RY IYTY+G + +NP+++LP +Y +++ YKG
Sbjct: 85 VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE 144
E+ PH++A+ D AYR+M+ + + SIL +GESGAGKTE TK +++YLA + +
Sbjct: 144 KRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGK 203
Query: 145 GRT------------VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISG 192
T +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I G
Sbjct: 204 KDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 263
Query: 193 AAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAK-YKLGSPKSFHYLNQSNCYEL 251
A I TYLLE+SR + + ER +H FY L A E + L ++ +L+ + +
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PI 322
Query: 252 DGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKS 311
D + T AM I+G +++EQ +I RVV+++L LGNI F K + D + + D
Sbjct: 323 PAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN-- 380
Query: 312 RFHLNMTAELLRCDAQSLEDALIKRVMVTP-----EEVITRTLDPVNAVASRDALAKTIY 366
TA C + R ++TP +V+ + A + +ALAK +
Sbjct: 381 ------TAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKF 434
Query: 367 SRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQ 425
RLF WI+ ++N ++ + S +G+LDI GFE F+ NSFEQ CIN+TNEKLQQ FN
Sbjct: 435 ERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNH 494
Query: 426 HVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETF 482
+F +EQEEY RE I W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F
Sbjct: 495 TMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSF 554
Query: 483 SQKLCQTFAKNNRFSKPKL--SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTA 540
+KL Q + +F K K +T+F ILHYAG+VTY A+ +L KN D + +LL
Sbjct: 555 VEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQ 614
Query: 541 AKCSFVAG------------------XXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLN 582
+ FVA +G +K QL LM TL
Sbjct: 615 SSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLR 674
Query: 583 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFG 642
T P+++RC+ PN+ + + V++QLRC GVLE IRI G+P R F EF R+
Sbjct: 675 NTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 734
Query: 643 ILAPEVL-EGNYDDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVLGNA 699
ILA + +G D + AC +++ L Y+IG++K+F R G +A L+ R + +
Sbjct: 735 ILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDV 794
Query: 700 ARKIQRQTRTYIARKEF-----------ILLRNAAVILQSFLRGEMARKLYEQLR 743
Q Q R Y+ARK F ++ RN A L+ LR +L+ +++
Sbjct: 795 IIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAYLK--LRNWQWWRLFTKVK 847
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 483 bits (1243), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/737 (38%), Positives = 413/737 (56%), Gaps = 55/737 (7%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
V+DM +L+ L+E VL NL RY IYTY+G + +NP+++LP +Y +++ YKG
Sbjct: 85 VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE 144
E+ PH++A+ D AYR+M+ + + SIL +GESGAGKTE TK +++YLA + +
Sbjct: 144 KRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGK 203
Query: 145 GRT------------VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISG 192
T +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I G
Sbjct: 204 KDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 263
Query: 193 AAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAK-YKLGSPKSFHYLNQSNCYEL 251
A I TYLLE+SR + + ER +H FY L A E + L ++ +L+ + +
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PI 322
Query: 252 DGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKS 311
D + T AM I+G +++EQ +I RVV+++L LGNI F K + D + + D
Sbjct: 323 PAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN-- 380
Query: 312 RFHLNMTAELLRCDAQSLEDALIKRVMVTP-----EEVITRTLDPVNAVASRDALAKTIY 366
TA C + R ++TP +V+ + A + +ALAK +
Sbjct: 381 ------TAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKF 434
Query: 367 SRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQ 425
RLF WI+ ++N ++ + S +G+LDI GFE F+ NSFEQ CIN+TNEKLQQ FN
Sbjct: 435 ERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNH 494
Query: 426 HVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETF 482
+F +EQEEY RE I W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F
Sbjct: 495 TMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSF 554
Query: 483 SQKLCQTFAKNNRFSKPKL--SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTA 540
+KL Q + +F K K +T+F ILHYAG+VTY A+ +L KN D + +LL
Sbjct: 555 VEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQ 614
Query: 541 AKCSFVAG------------------XXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLN 582
+ FVA +G +K QL LM TL
Sbjct: 615 SSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLR 674
Query: 583 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFG 642
T P+++RC+ PN+ + + V++QLRC GVLE IRI G+P R F EF R+
Sbjct: 675 NTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 734
Query: 643 ILAPEVL-EGNYDDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVLGNA 699
ILA + +G D + AC +++ L Y+IG++K+F R G +A L+ R + +
Sbjct: 735 ILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDV 794
Query: 700 ARKIQRQTRTYIARKEF 716
Q Q R Y+ARK F
Sbjct: 795 IIAFQAQCRGYLARKAF 811
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust.
Identities = 265/679 (39%), Positives = 401/679 (59%), Gaps = 24/679 (3%)
Query: 22 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQY 81
A GV D L+ + E ++NL R++ + IYTY G+++I+ NPF+ L ++Y ++ Y
Sbjct: 7 AEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNL-NIYKESDIKAY 65
Query: 82 KGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRS 141
G E+ PH++A+ + AYR+M ++ +++SGESGAGKTE +K +M++L ++
Sbjct: 66 NGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQ 125
Query: 142 GVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLE 201
G + + +L+SNP+LEAFGNAKT+RN+NSSRFGK++E+QF+ G G I YLLE
Sbjct: 126 SPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLE 185
Query: 202 RSRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLG-SPKSFHYLNQSNCYELDGVSDAHE 259
+SRV + ER++H FY +L + + L + ++ YL +S C+++ + D+ E
Sbjct: 186 KSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGE 245
Query: 260 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSV----IKDEKSRFHL 315
+ +AM+ +G+ + +Q +I+R++AAILH+GNI FA+ E + + D KS L
Sbjct: 246 FKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKS---L 302
Query: 316 NMTAELLRCDAQSLEDALIKRVMVTPE----EVITRTLDPVNAVASRDALAKTIYSRLFD 371
A L+ D QSL AL R + T EVI+ +D A SRDALAK +Y RLF+
Sbjct: 303 AAAASCLKTDQQSLSIALCYRSISTGVGKRCEVISVPMDCNQAAYSRDALAKALYERLFN 362
Query: 372 WIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKME 431
W+V KIN I + +IG+LDIYGFE F+ NSFEQ INF NEKLQQ F + K E
Sbjct: 363 WLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSE 422
Query: 432 QEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA 491
QEEY RE I W IE+ +N+ + +LIEKKP G+I+LLDEAC+ KST +TF +C+ F
Sbjct: 423 QEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFE 482
Query: 492 KNNRFSKPKLSR------TDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSF 545
KN +S+ T F + HYAG+VTY FLDKNKD + + + + ++
Sbjct: 483 KNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPL 542
Query: 546 VAGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFEN 605
V G GS+F+ + +L+ TL A +PHY+RC+K N+ + + +
Sbjct: 543 VQGLFPPTRPEDSKKRPETA-GSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDE 601
Query: 606 FNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG-NYDDQVACQMILD 664
V Q+R G+LE +R+ AG+ R + F NR+ +L + N + A ++IL
Sbjct: 602 DRVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTAKQATELILQ 661
Query: 665 KKGLKGYQI--GKTKVFLR 681
+ + +I GKTKVF+R
Sbjct: 662 QHNIDKEEIRMGKTKVFIR 680
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 474 bits (1220), Expect = e-133, Method: Compositional matrix adjust.
Identities = 264/679 (38%), Positives = 400/679 (58%), Gaps = 24/679 (3%)
Query: 22 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQY 81
A GV D L+ + E ++NL R++ + IYTY G+++I+ NPF+ L ++Y ++ Y
Sbjct: 7 AEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNL-NIYKESDIKAY 65
Query: 82 KGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRS 141
G E+ PH++A+ + AYR+M ++ +++SGESGAGKTE +K +M++L ++
Sbjct: 66 NGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQ 125
Query: 142 GVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLE 201
G + + +L+SNP+LEAFGNAKT+RN+NSSRFGK++E+QF+ G G I YLLE
Sbjct: 126 SPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLE 185
Query: 202 RSRVCQISDPERNYHCFY-LLCAAPHEDIAKYKLG-SPKSFHYLNQSNCYELDGVSDAHE 259
+SRV + ER++H FY +L + + L + ++ YL +S C+++ + D+ E
Sbjct: 186 KSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGE 245
Query: 260 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSV----IKDEKSRFHL 315
+ +AM+ +G+ + +Q +I+R++AAILH+GNI FA+ E + + D KS L
Sbjct: 246 FKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKS---L 302
Query: 316 NMTAELLRCDAQSLEDALIKRVMVTPE----EVITRTLDPVNAVASRDALAKTIYSRLFD 371
A L+ D QSL AL R + T VI+ +D A SRDALAK +Y RLF+
Sbjct: 303 AAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFN 362
Query: 372 WIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKME 431
W+V KIN I + +IG+LDIYGFE F+ NSFEQ INF NEKLQQ F + K E
Sbjct: 363 WLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSE 422
Query: 432 QEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA 491
QEEY RE I W IE+ +N+ + +LIEKKP G+I+LLDEAC+ KST +TF +C+ F
Sbjct: 423 QEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFE 482
Query: 492 KNNRFSKPKLSR------TDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSF 545
KN +S+ T F + HYAG+VTY FLDKNKD + + + + ++
Sbjct: 483 KNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPL 542
Query: 546 VAGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFEN 605
V G GS+F+ + +L+ TL A +PHY+RC+K N+ + + +
Sbjct: 543 VQGLFPPTRPEDSKKRPETA-GSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDE 601
Query: 606 FNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG-NYDDQVACQMILD 664
V Q+R G+LE +R+ AG+ R + F NR+ +L + N + A ++IL
Sbjct: 602 DRVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTAKQATELILQ 661
Query: 665 KKGLKGYQI--GKTKVFLR 681
+ + +I GKTKVF+R
Sbjct: 662 QHNIDKEEIRMGKTKVFIR 680
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/728 (37%), Positives = 410/728 (56%), Gaps = 48/728 (6%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM +++LHEP VL NL RY IYTY+G + VNP++ LP +Y+ ++ Y+G
Sbjct: 85 IEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLP-VYNPKVVLAYRGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG----- 139
E PH+F++ D AY+ M+ + ++ SIL++GESGAGKT TK +++Y A +
Sbjct: 144 KRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKK 203
Query: 140 ---RSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIR 196
+SG T+E Q++ +NP+LEAFGNAKTVRN+NSSRFGKF+ I F G+++ A I
Sbjct: 204 KEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIE 263
Query: 197 TYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKL--GSPKSFHYLNQSNCYELDGV 254
TYLLE+SRV ER+YH FY + + ++ L +P +HY++Q + +
Sbjct: 264 TYLLEKSRVTFQLPAERSYHIFYQIMSNKKPELIDMLLITTNPYDYHYVSQGEI-TVPSI 322
Query: 255 SDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGK-----EIDSSVIKDE 309
D E +AT A+DI+G S E+ AI+++ A++H GN+ F + + E D + + D+
Sbjct: 323 DDQEELMATDSAIDILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADK 382
Query: 310 KSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRL 369
+ +AELL+ AL + E +T+ S ALAK +Y ++
Sbjct: 383 AAYLMGLNSAELLK--------ALCYPRVKVGNEFVTKGQTVSQVHNSVGALAKAVYEKM 434
Query: 370 FDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFK 429
F W+V +IN + + IGVLDI GFE F NSFEQ CINFTNEKLQQ FN H+F
Sbjct: 435 FLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFV 494
Query: 430 MEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLC- 487
+EQEEY +E I W +I+F +D ++LIEK P GI ++L+E CMFPK+T +F KL
Sbjct: 495 LEQEEYKKEGIEWEFIDFGMDLAACIELIEK-PMGIFSILEEECMFPKATDTSFKNKLYD 553
Query: 488 QTFAKNNRFSKPKLSR----TDFTILHYAGEVTYQANHFLDKNKD----YVVAEHQ---- 535
Q K+N F KPK ++ F+++HYAG V Y + +L+KNKD V+ +Q
Sbjct: 554 QHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEKNKDPLNETVIGLYQKSSV 613
Query: 536 ---ALLTAAKCSFVAGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCV 592
ALL A A + + F+ L LM L +T PH++RC+
Sbjct: 614 KTLALLFATYGG-EAEGGGGKKGGKKKGSSFQTVSALFRENLNKLMANLRSTHPHFVRCI 672
Query: 593 KPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL-APEVLEG 651
PN P E+ V+ QLRC GVLE IRI G+P+R + +F R+ +L A + EG
Sbjct: 673 IPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNASAIPEG 732
Query: 652 NY-DDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTR 708
+ D + A + +L + Y+ G TKVF +AG + L+ R + L + Q + R
Sbjct: 733 QFMDSKKASEKLLGSIDVDHTQYRFGHTKVFFKAGLLGLLEEMRDDKLAEIITRTQARCR 792
Query: 709 TYIARKEF 716
++ R E+
Sbjct: 793 GFLMRVEY 800
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 274/713 (38%), Positives = 402/713 (56%), Gaps = 55/713 (7%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
V+DM +L+ L+E VL NL RY IYTY+G + +NP+++LP +Y +++ YKG
Sbjct: 85 VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE 144
E+ PH++A+ D AYR+M+ + + SIL +GESGAGKTE TK +++YLA + +
Sbjct: 144 KRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGK 203
Query: 145 GRT------------VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISG 192
T +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I G
Sbjct: 204 KDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 263
Query: 193 AAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAK-YKLGSPKSFHYLNQSNCYEL 251
A I TYLLE+SR + + ER +H FY L A E + L ++ +L+ + +
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PI 322
Query: 252 DGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKS 311
D + T AM I+G +++EQ +I RVV+++L LGNI F K + D + + D
Sbjct: 323 PAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN-- 380
Query: 312 RFHLNMTAELLRCDAQSLEDALIKRVMVTP-----EEVITRTLDPVNAVASRDALAKTIY 366
TA C + R ++TP +V+ + A + +ALAK +
Sbjct: 381 ------TAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKF 434
Query: 367 SRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQ 425
RLF WI+ ++N ++ + S +G+LDI GFE F+ NSFEQ CIN+TNEKLQQ FN
Sbjct: 435 ERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNH 494
Query: 426 HVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETF 482
+F +EQEEY RE I W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F
Sbjct: 495 TMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSF 554
Query: 483 SQKLCQTFAKNNRFSKPKL--SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTA 540
+KL Q + +F K K +T+F ILHYAG+VTY A+ +L KN D + +LL
Sbjct: 555 VEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQ 614
Query: 541 AKCSFVAG------------------XXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLN 582
+ FVA +G +K QL LM TL
Sbjct: 615 SSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLR 674
Query: 583 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFG 642
T P+++RC+ PN+ + + V++QLRC GVLE IRI G+P R F EF R+
Sbjct: 675 NTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 734
Query: 643 ILAPEVL-EGNYDDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARR 692
ILA + +G D + AC +++ L Y+IG++K+F R G +A L+ R
Sbjct: 735 ILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEER 787
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 278/707 (39%), Positives = 405/707 (57%), Gaps = 51/707 (7%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
+DM +L+ L+E VL NL RY IYTY+G + +NP+++LP +Y ++E Y+G
Sbjct: 62 AEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLP-IYTEAIVEMYRGK 120
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG----GR 140
E+ PHV+AV + AYR+M+ + + SIL +GESGAGKTE TK +++YLA++ GR
Sbjct: 121 KRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGR 180
Query: 141 S--GVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTY 198
GV G +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I GA I TY
Sbjct: 181 KEPGVPGE-LERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETY 239
Query: 199 LLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAH 258
LLE+SR + + E ++H FY L E + L P S HY +N +
Sbjct: 240 LLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCS-HYRFLTNGPSSSPGQERE 298
Query: 259 EYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMT 318
+ T ++ ++G S +E ++ R+V+A+L GNI + + D + + D N
Sbjct: 299 LFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPD-------NTA 351
Query: 319 AELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASR-------DALAKTIYSRLFD 371
A+ L C L R ++TP + R D V ++ +ALAK Y RLF
Sbjct: 352 AQKL-CRLLGLGVTDFSRALLTPRIKVGR--DYVQKAQTKEQADFALEALAKATYERLFR 408
Query: 372 WIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKM 430
W+V ++N ++ + P S +G+LDI GFE F+ NSFEQ CIN+TNEKLQQ FN +F +
Sbjct: 409 WLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVL 468
Query: 431 EQEEYTREEINWSYIEF-IDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETFSQKLC 487
EQEEY RE I W++++F +D Q +DLIE+ P G++ALLDE C FPK+T ++F +K+
Sbjct: 469 EQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVA 528
Query: 488 QTFAKNNRFSKPKLSR--TDFTILHYAGEVTYQANHFLDKNKDYVVAEHQAL-------L 538
Q + +F +P+ R DF++LHYAG+V Y+AN +L KN D + AL L
Sbjct: 529 QEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRL 588
Query: 539 TAAKCSFVAGXXXXXXXXX---------XXXXXXXXIGSRFKLQLQSLMETLNATAPHYI 589
TA V G +G +K L LM TL+ T P ++
Sbjct: 589 TAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSFV 648
Query: 590 RCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 649
RC+ PN+ + E V+ QLRC GVLE IRI G+P R F EF R+ IL P +
Sbjct: 649 RCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPNAI 708
Query: 650 -EGNYDDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRA 693
+G D + AC+ ++ L Y++G++K+F RAG +A+L+ RA
Sbjct: 709 PKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERA 755
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 463 bits (1191), Expect = e-130, Method: Compositional matrix adjust.
Identities = 267/702 (38%), Positives = 402/702 (57%), Gaps = 37/702 (5%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM L++LHEP VL NL RY IYTY+G + VNP++ LP +Y ++ Y+G
Sbjct: 87 IEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLP-VYTPEVVAAYRGK 145
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY---LAYLGGRS 141
E PH+F++ D AY+ M+ + ++ SIL++GESGAGKT TK +++Y +A +G RS
Sbjct: 146 KRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRS 205
Query: 142 GVE---GR-TVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRT 197
+ G+ T+E Q++++NP LEAFGNAKTVRN+NSSRFGKF+ I F G+++ A I T
Sbjct: 206 KKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIET 265
Query: 198 YLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKL--GSPKSFHYLNQSNCYELDGVS 255
YLLE+SRV ER+YH FY + + ++ L +P + +++Q + +
Sbjct: 266 YLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGET-TVASID 324
Query: 256 DAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFA-KGKEIDSSVIKDEKSRFH 314
DA E +AT A D++G + +E+ +++++ AI+H GN+ F K +E + E++
Sbjct: 325 DAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEA--- 381
Query: 315 LNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIV 374
+ +A L+ ++ L L + E +T+ + + + ALAK +Y R+F+W+V
Sbjct: 382 -DKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMV 440
Query: 375 EKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEE 434
+IN ++ + IGVLDI GFE F NSFEQ CINFTNEKLQQ FN H+F +EQEE
Sbjct: 441 TRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEE 500
Query: 435 YTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT-FAK 492
Y +E I W++I+F +D Q +DLIE KP GI+++L+E CMFPK+T TF KL K
Sbjct: 501 YKKEGIEWTFIDFGMDLQACIDLIE-KPMGIMSILEEECMFPKATDMTFKAKLFDNHLGK 559
Query: 493 NNRFSKPK----LSRTDFTILHYAGEVTYQANHFLDKNKD----YVVAEHQ----ALLTA 540
+ F KP+ F+++HYAG V Y +L KNKD VV +Q LL+
Sbjct: 560 SANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLST 619
Query: 541 AKCSFVAGXX--XXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVL 598
++ + + + L LM L +T PH++RC+ PN
Sbjct: 620 LFANYAGADAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETK 679
Query: 599 KPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNY-DDQ 656
P + +N V+ QLRC GVLE IRI G+P R + +F R+ IL P + EG + D +
Sbjct: 680 SPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSR 739
Query: 657 VACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVL 696
+ +L + Y+ G TKVF +AG + L+ R E L
Sbjct: 740 KGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERL 781
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/728 (36%), Positives = 391/728 (53%), Gaps = 48/728 (6%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM +++LHEP VL NL RY IYTY+G + VNP+ LP +Y+ ++ Y+G
Sbjct: 88 IEDMAMMTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPYXWLP-VYNPXVVLAYRGK 146
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG----- 139
E PH+F++ D AY+ M+ + ++ SIL++GESGAGKT T +++Y A +
Sbjct: 147 KRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEKK 206
Query: 140 ---RSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIR 196
+SG T+E Q++ +NP+LEAFGNA TVRN+NSSRFG F+ I F G+++ A I
Sbjct: 207 KEEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIE 266
Query: 197 TYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKL--GSPKSFHYLNQSNCYELDGV 254
TYLLE SRV ER+YH FY + + ++ L +P +HY+++ + +
Sbjct: 267 TYLLEXSRVTFQLPAERSYHIFYQIMSNXXPELIDMLLITTNPYDYHYVSEGEI-TVPSI 325
Query: 255 SDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGK-----EIDSSVIKDE 309
D E +AT A+DI+G S E AI+ + A++H GN+ F + + E D + + D
Sbjct: 326 DDQEELMATDSAIDILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGTEVADX 385
Query: 310 KSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRL 369
+ +AELL+ A + VT E ++ + V A LA +Y +
Sbjct: 386 AAYLMGLNSAELLK--ALCYPRVGVGNEAVTXGETVSEVHNSVGA------LAXAVYEXM 437
Query: 370 FDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFK 429
F W+V +IN + + IGVLDI GFE F NSFEQ CINFTNE LQQ FN H+F
Sbjct: 438 FLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEXLQQFFNHHMFV 497
Query: 430 MEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLC- 487
+EQEEY E I W +I+F +D ++LIE P GI ++L+E CMFPK+T +F L
Sbjct: 498 LEQEEYXXEGIEWEFIDFGMDLAACIELIEX-PMGIFSILEEECMFPKATDTSFXNXLYD 556
Query: 488 QTFAKNNRFSKPKLSR----TDFTILHYAGEVTYQANHFLDKNKD----YVVAEHQ---- 535
+ K+N F KPK ++ F+++HYAG V Y + +L+ N D V+ +Q
Sbjct: 557 EHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEXNXDPLNETVIGLYQXSSV 616
Query: 536 ---ALLTAAKCSFVAGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCV 592
ALL A A + + F+ L LM L +T PH++RC+
Sbjct: 617 XTLALLFATYGG-EAEGGGGKKGGKKKGSSFQTVSALFRENLNXLMANLRSTHPHFVRCI 675
Query: 593 KPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL-APEVLEG 651
PN P E+ V+ QLRC GVLE IRI G+P+R + +F R+ +L A + EG
Sbjct: 676 IPNETXTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNASAIPEG 735
Query: 652 NY-DDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTR 708
+ D + A + +L + Y G T VF AG + L+ R + L Q + R
Sbjct: 736 QFMDSKKASEKLLGGGDVDHTQYAFGHTXVFFXAGLLGLLEEMRDDXLAEIITATQARCR 795
Query: 709 TYIARKEF 716
++ R E+
Sbjct: 796 GFLMRVEY 803
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 264/728 (36%), Positives = 391/728 (53%), Gaps = 48/728 (6%)
Query: 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84
++DM +++LHEP VL NL RY IYTY+G + VNP+ LP +Y+ ++ Y+G
Sbjct: 85 IEDMAMMTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPYXWLP-VYNPXVVLAYRGK 143
Query: 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG----- 139
E PH+F++ D AY+ M+ + ++ SIL++GESGAGKT T +++Y A +
Sbjct: 144 KRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEKK 203
Query: 140 ---RSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIR 196
+SG T+E Q++ +NP+LEAFGNA TVRN+NSSRFG F+ I F G+++ A I
Sbjct: 204 KEEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIE 263
Query: 197 TYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKL--GSPKSFHYLNQSNCYELDGV 254
TYLLE SRV ER+YH FY + + ++ L +P +HY+++ + +
Sbjct: 264 TYLLEXSRVTFQLPAERSYHIFYQIMSNXXPELIDMLLITTNPYDYHYVSEGEI-TVPSI 322
Query: 255 SDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGK-----EIDSSVIKDE 309
D E +AT A+DI+G S E AI+ + A++H GN+ F + + E D + + D
Sbjct: 323 DDQEELMATDSAIDILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGTEVADX 382
Query: 310 KSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRL 369
+ +AELL+ A + VT E ++ + V A LA +Y +
Sbjct: 383 AAYLMGLNSAELLK--ALCYPRVGVGNEAVTXGETVSEVHNSVGA------LAXAVYEXM 434
Query: 370 FDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFK 429
F W+V +IN + + IGVLDI GFE F NSFEQ CINFTNE LQQ FN H+F
Sbjct: 435 FLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEXLQQFFNHHMFV 494
Query: 430 MEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLC- 487
+EQEEY E I W +I+F +D ++LIE P GI ++L+E CMFPK+T +F L
Sbjct: 495 LEQEEYXXEGIEWEFIDFGMDLAACIELIEX-PMGIFSILEEECMFPKATDTSFXNXLYD 553
Query: 488 QTFAKNNRFSKPKLSR----TDFTILHYAGEVTYQANHFLDKNKD----YVVAEHQ---- 535
+ K+N F KPK ++ F+++HYAG V Y + +L+ N D V+ +Q
Sbjct: 554 EHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEXNXDPLNETVIGLYQXSSV 613
Query: 536 ---ALLTAAKCSFVAGXXXXXXXXXXXXXXXXXIGSRFKLQLQSLMETLNATAPHYIRCV 592
ALL A A + + F+ L LM L +T PH++RC+
Sbjct: 614 XTLALLFATYGG-EAEGGGGKKGGKKKGSSFQTVSALFRENLNXLMANLRSTHPHFVRCI 672
Query: 593 KPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL-APEVLEG 651
PN P E+ V+ QLRC GVLE IRI G+P+R + +F R+ +L A + EG
Sbjct: 673 IPNETXTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNASAIPEG 732
Query: 652 NY-DDQVACQMILDKKGLKG--YQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTR 708
+ D + A + +L + Y G T VF AG + L+ R + L Q + R
Sbjct: 733 QFMDSKKASEKLLGGGDVDHTQYAFGHTXVFFXAGLLGLLEEMRDDXLAEIITATQARCR 792
Query: 709 TYIARKEF 716
++ R E+
Sbjct: 793 GFLMRVEY 800
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 58
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 693 AEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAAA 748
A+ L A +IQ+ R ++ RK ++ ++ AA+ +Q ++RG AR + LRR AA
Sbjct: 1 ADKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAA 56
Score = 35.0 bits (79), Expect = 0.34, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 746 AAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAA 796
AA ++IQ R ++ ++ YL ++ +A+ +Q +R AR + +RTKAA
Sbjct: 6 AACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAA 56
>pdb|2F6H|X Chain X, Myosin V Cargo Binding Domain
Length = 419
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 1286 IVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGL 1345
I+ N+ M++ ++ + + V T + ++++ FN L+++R S+ G + +
Sbjct: 207 ILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNV 266
Query: 1346 AELEQWC--HDSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQL 1403
LE+WC H T+ G+ + L+H+ Q L + + + + +I +C L+ QL
Sbjct: 267 TRLEEWCKTHGLTD---GT--ECLQHLIQTAKLLQVRKYTIEDI-DILRGICYSLTPAQL 320
Query: 1404 YRISTMY 1410
++ + Y
Sbjct: 321 QKLISQY 327
>pdb|2CH7|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 934 EKINSLTAEVENLKGLLQS-------QTQTADEAKQAFTVSEAKNG-ELTKKLKDAEKRV 985
EK+NS+ VE + +LQ+ QT DE A T AKN E+T +K+ R+
Sbjct: 219 EKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMT-ENAKNAEEITNSVKEVNARL 277
Query: 986 DELQDSVQRLAEKVSNLESENQVLRQ 1011
E+ S + + +V + Q+L++
Sbjct: 278 QEISASTEEVTSRVQTIRENVQMLKE 303
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 96 VGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 138
+G+ A + +N K N IL+ G G+GKT T L RY+ G
Sbjct: 85 LGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRG 127
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 96 VGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 138
+G+ A + +N K N IL+ G G+GKT T L RY+ G
Sbjct: 85 LGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRG 127
>pdb|2WZM|A Chain A, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZM|B Chain B, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|A Chain A, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|B Chain B, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
Length = 283
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 345 ITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFE 400
+ R LD A +A +T L W ++ N+ I + + + I LD++GFE
Sbjct: 200 VGRLLDHPAVTAIAEAHGRTAAQVLLRWSIQLGNVVISRSANPERIASNLDVFGFE 255
>pdb|1KCF|A Chain A, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
pdb|1KCF|B Chain B, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
Length = 258
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 22/113 (19%)
Query: 330 EDALIKRVMVTPEEVITRTL-------DPVNAVASRDALAKTIYSRLFDWIVEKINISIG 382
+D L++R++ +P +R L + AS++ +K I + +W VE + G
Sbjct: 24 KDELLRRIVDSPIYPTSRVLGIDLGIKNFSYCFASQNEDSKVI---IHNWSVENLTEKNG 80
Query: 383 QDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEY 435
LDI E F+ +S I N L + FN HV ME++ Y
Sbjct: 81 -----------LDIQWTEDFQPSSMADLSIQLFN-TLHEKFNPHVILMERQRY 121
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 113 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAK 166
+L++GESG GK +++ RY G + ++ Q++ ES E FG+ K
Sbjct: 155 VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES----ELFGHEK 204
>pdb|2YO3|A Chain A, Salmonella Enterica Sada 1185-1386 Fused To Gcn4 Adaptors
(Sadak14)
pdb|2YO3|B Chain B, Salmonella Enterica Sada 1185-1386 Fused To Gcn4 Adaptors
(Sadak14)
pdb|2YO3|C Chain C, Salmonella Enterica Sada 1185-1386 Fused To Gcn4 Adaptors
(Sadak14)
Length = 268
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSV 992
T +I +++A V + + +Q + + E +A T ++ K GE+ K+K E ++ +++D +
Sbjct: 182 TTRIGNVSAAVNDTDAVNYAQLKRSVE--EANTYTDQKMGEMNSKIKGVENKMKQIEDKI 239
Query: 993 QRLAEKVSNLESE 1005
+ + K+ ++E+E
Sbjct: 240 EEILSKIYHIENE 252
>pdb|3EAF|A Chain A, Crystal Structure Of Abc Transporter, Substrate Binding
Protein Aeropyrum Pernix
Length = 391
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 224 APHEDIAK-YKLGSPKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFR 282
P D+ K Y LG+ +F Y N+ Y DGV Y+ A + + +E FR
Sbjct: 15 GPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYRE--FR 72
Query: 283 ---VVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELL 322
V AI+ G D K + V D+ + + +A+LL
Sbjct: 73 DRYGVIAIIGWGTADTEK---LSDQVDTDKITYISASYSAKLL 112
>pdb|3BBN|E Chain E, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 308
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 658 ACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARR 692
A ++ DKKG G +GK K + A Q A +DARR
Sbjct: 176 AIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARR 210
>pdb|2CH7|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 934 EKINSLTAEVENLKGLLQS-------QTQTADEAKQAFTVSEAKNGE-LTKKLKDAEKRV 985
EK+NS+ VE + +LQ+ Q DE A T AKN E +T +K+ R+
Sbjct: 219 EKLNSIVGAVERINEMLQNIAAAIEEQNAAVDEITTAMT-ENAKNAEEITNSVKEVNARL 277
Query: 986 DELQDSVQRLAEKVSNLESENQVLRQ 1011
E+ S + + +V + Q+L++
Sbjct: 278 QEISASTEEVTSRVQTIRENVQMLKE 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,271,589
Number of Sequences: 62578
Number of extensions: 1489319
Number of successful extensions: 4804
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4088
Number of HSP's gapped (non-prelim): 165
length of query: 1491
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1380
effective length of database: 8,027,179
effective search space: 11077507020
effective search space used: 11077507020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)