Query 000453
Match_columns 1491
No_of_seqs 608 out of 2981
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 6E-231 1E-235 2135.5 96.0 1312 22-1434 65-1404(1463)
2 PTZ00014 myosin-A; Provisional 100.0 4E-196 8E-201 1846.4 72.0 729 5-738 78-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 9E-187 2E-191 1743.3 65.0 674 23-696 1-674 (674)
4 KOG0160 Myosin class V heavy c 100.0 1E-183 3E-188 1683.6 66.8 756 17-785 2-758 (862)
5 KOG0164 Myosin class I heavy c 100.0 3E-182 7E-187 1568.7 58.6 729 21-766 6-755 (1001)
6 cd01380 MYSc_type_V Myosin mot 100.0 3E-182 6E-187 1713.1 62.7 664 24-692 1-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 7E-182 1E-186 1701.4 62.4 661 24-692 1-671 (671)
8 cd01377 MYSc_type_II Myosin mo 100.0 2E-181 4E-186 1705.9 64.2 666 22-692 4-693 (693)
9 cd01378 MYSc_type_I Myosin mot 100.0 2E-180 5E-185 1691.5 62.8 662 24-692 1-674 (674)
10 cd01383 MYSc_type_VIII Myosin 100.0 4E-180 9E-185 1683.7 62.2 656 22-692 7-677 (677)
11 cd01387 MYSc_type_XV Myosin mo 100.0 3E-179 6E-184 1679.5 62.7 660 24-692 2-677 (677)
12 cd01385 MYSc_type_IX Myosin mo 100.0 6E-179 1E-183 1680.0 65.1 663 23-693 7-689 (692)
13 cd01382 MYSc_type_VI Myosin mo 100.0 1E-178 3E-183 1682.2 64.1 664 21-691 2-715 (717)
14 cd01379 MYSc_type_III Myosin m 100.0 2E-176 5E-181 1644.2 62.6 639 24-692 1-653 (653)
15 KOG0161 Myosin class II heavy 100.0 6E-173 1E-177 1694.1 91.0 734 6-769 66-823 (1930)
16 smart00242 MYSc Myosin. Large 100.0 4E-175 8E-180 1653.5 64.1 666 23-693 6-677 (677)
17 KOG0162 Myosin class I heavy c 100.0 8E-176 2E-180 1513.0 52.1 696 20-726 15-725 (1106)
18 cd00124 MYSc Myosin motor doma 100.0 3E-173 6E-178 1642.1 63.3 662 24-692 1-679 (679)
19 cd01386 MYSc_type_XVIII Myosin 100.0 1E-172 3E-177 1628.8 62.0 660 25-692 2-767 (767)
20 KOG0163 Myosin class VI heavy 100.0 7E-170 2E-174 1463.0 78.2 748 5-769 40-837 (1259)
21 PF00063 Myosin_head: Myosin h 100.0 2E-165 4E-170 1592.6 55.0 653 25-681 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 2E-113 4E-118 1086.8 29.4 752 22-787 60-1008(1062)
23 KOG1892 Actin filament-binding 100.0 9E-29 2E-33 294.8 22.9 298 1083-1458 554-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 1.6E-27 3.5E-32 234.4 7.1 105 1309-1416 1-105 (105)
25 KOG0161 Myosin class II heavy 99.4 1.3E-09 2.8E-14 148.1 43.0 629 314-1011 324-1020(1930)
26 cd01363 Motor_domain Myosin an 98.6 4.1E-08 8.9E-13 107.4 6.3 90 93-191 8-98 (186)
27 COG5022 Myosin heavy chain [Cy 98.5 9.5E-05 2E-09 97.5 33.4 129 709-840 734-866 (1463)
28 KOG0160 Myosin class V heavy c 98.4 1.5E-06 3.1E-11 111.1 13.4 86 745-833 673-758 (862)
29 KOG0520 Uncharacterized conser 98.4 5.3E-07 1.2E-11 114.8 9.3 119 695-813 808-934 (975)
30 KOG0520 Uncharacterized conser 98.1 8.4E-06 1.8E-10 104.2 10.2 116 721-840 811-938 (975)
31 KOG0971 Microtubule-associated 97.7 0.035 7.7E-07 70.0 31.2 28 1279-1306 897-924 (1243)
32 KOG0971 Microtubule-associated 97.7 0.0092 2E-07 74.9 25.5 59 952-1010 400-475 (1243)
33 KOG1029 Endocytic adaptor prot 97.6 0.01 2.2E-07 73.4 24.6 10 1403-1412 1053-1062(1118)
34 TIGR02169 SMC_prok_A chromosom 97.4 1.6 3.5E-05 61.6 46.6 6 1143-1148 617-622 (1164)
35 KOG0996 Structural maintenance 97.3 1.1 2.4E-05 59.2 38.6 47 1364-1413 1169-1218(1293)
36 KOG0250 DNA repair protein RAD 97.3 0.28 6E-06 64.5 32.8 16 609-624 33-48 (1074)
37 PRK11637 AmiB activator; Provi 97.3 0.054 1.2E-06 67.4 26.5 75 935-1009 171-252 (428)
38 KOG0164 Myosin class I heavy c 97.1 0.0046 9.9E-08 75.9 13.8 58 720-787 696-753 (1001)
39 KOG0250 DNA repair protein RAD 97.1 1.3 2.7E-05 58.7 35.9 75 937-1011 390-464 (1074)
40 PRK11637 AmiB activator; Provi 97.1 0.15 3.3E-06 63.5 27.4 29 974-1002 224-252 (428)
41 PF09726 Macoilin: Transmembra 97.1 0.12 2.6E-06 67.2 26.8 37 843-879 460-496 (697)
42 COG1196 Smc Chromosome segrega 97.0 3.4 7.3E-05 58.2 44.6 15 1340-1354 946-960 (1163)
43 PRK04863 mukB cell division pr 97.0 0.9 2E-05 64.0 35.9 38 974-1011 440-477 (1486)
44 KOG0933 Structural maintenance 96.9 0.76 1.6E-05 59.7 30.6 31 86-139 20-50 (1174)
45 KOG4229 Myosin VII, myosin IXB 96.9 0.0004 8.6E-09 91.7 2.4 268 566-835 644-1008(1062)
46 PF12718 Tropomyosin_1: Tropom 96.9 0.17 3.7E-06 52.8 21.1 128 848-1007 12-139 (143)
47 KOG1853 LIS1-interacting prote 96.9 0.2 4.4E-06 54.8 21.6 72 941-1012 105-179 (333)
48 KOG2128 Ras GTPase-activating 96.8 0.021 4.5E-07 75.9 17.0 90 751-840 541-646 (1401)
49 PF09726 Macoilin: Transmembra 96.8 0.13 2.9E-06 66.7 24.3 61 946-1006 592-652 (697)
50 KOG0933 Structural maintenance 96.8 0.31 6.8E-06 63.0 26.3 22 935-956 788-809 (1174)
51 KOG2128 Ras GTPase-activating 96.8 0.022 4.8E-07 75.6 16.9 114 703-816 513-645 (1401)
52 PF00612 IQ: IQ calmodulin-bin 96.8 0.0013 2.7E-08 44.9 3.1 19 746-764 2-20 (21)
53 KOG1029 Endocytic adaptor prot 96.8 2.5 5.4E-05 53.4 32.5 19 887-905 435-453 (1118)
54 TIGR02168 SMC_prok_B chromosom 96.8 0.9 2E-05 64.2 34.4 19 112-130 25-43 (1179)
55 PF08317 Spc7: Spc7 kinetochor 96.8 0.27 5.8E-06 58.9 24.4 81 932-1012 207-291 (325)
56 PF00612 IQ: IQ calmodulin-bin 96.6 0.0022 4.8E-08 43.7 3.2 19 721-739 2-20 (21)
57 PF12128 DUF3584: Protein of u 96.6 7 0.00015 55.2 42.5 27 1406-1433 1054-1081(1201)
58 PRK09039 hypothetical protein; 96.5 0.3 6.5E-06 58.7 22.7 66 935-1000 117-182 (343)
59 KOG4643 Uncharacterized coiled 96.5 2.6 5.6E-05 55.0 31.1 163 843-1012 170-337 (1195)
60 PF07888 CALCOCO1: Calcium bin 96.4 0.55 1.2E-05 58.5 24.2 76 934-1009 371-457 (546)
61 KOG0163 Myosin class VI heavy 96.4 2.4 5.1E-05 53.4 28.6 56 754-817 782-837 (1259)
62 PRK09039 hypothetical protein; 96.4 0.32 7E-06 58.4 21.7 21 850-870 53-73 (343)
63 PRK02224 chromosome segregatio 96.3 4.7 0.0001 55.3 35.5 11 677-687 132-142 (880)
64 PHA02562 46 endonuclease subun 96.3 0.55 1.2E-05 60.7 25.4 15 937-951 302-316 (562)
65 PRK02224 chromosome segregatio 96.3 1.8 3.9E-05 59.2 31.5 14 997-1010 412-425 (880)
66 COG1579 Zn-ribbon protein, pos 96.3 0.88 1.9E-05 51.2 22.8 52 933-984 88-139 (239)
67 KOG0925 mRNA splicing factor A 96.3 0.0031 6.8E-08 74.7 3.7 57 62-127 23-79 (699)
68 PF00261 Tropomyosin: Tropomyo 96.2 0.42 9.1E-06 54.5 20.7 26 934-959 134-159 (237)
69 PF14662 CCDC155: Coiled-coil 96.2 0.19 4.2E-06 53.8 16.3 74 939-1012 65-138 (193)
70 PRK03918 chromosome segregatio 96.2 0.74 1.6E-05 63.0 26.9 18 113-130 26-43 (880)
71 PF07888 CALCOCO1: Calcium bin 96.2 0.83 1.8E-05 56.9 24.0 17 621-637 40-56 (546)
72 KOG0995 Centromere-associated 96.2 1.7 3.7E-05 53.8 25.9 22 809-830 265-286 (581)
73 PF06785 UPF0242: Uncharacteri 96.1 1.7 3.8E-05 49.8 24.0 81 933-1013 133-224 (401)
74 PF14662 CCDC155: Coiled-coil 96.1 2.1 4.5E-05 46.1 23.2 79 934-1012 102-187 (193)
75 PHA02562 46 endonuclease subun 96.1 1.2 2.6E-05 57.7 26.4 19 945-963 303-321 (562)
76 PF12128 DUF3584: Protein of u 96.1 12 0.00027 52.8 41.0 32 702-733 227-258 (1201)
77 KOG4643 Uncharacterized coiled 96.0 2.3 4.9E-05 55.5 26.8 26 848-873 406-431 (1195)
78 COG4942 Membrane-bound metallo 96.0 2.9 6.3E-05 50.6 26.5 28 979-1006 220-247 (420)
79 PTZ00014 myosin-A; Provisional 96.0 0.011 2.4E-07 77.9 7.2 41 746-786 778-818 (821)
80 smart00787 Spc7 Spc7 kinetocho 95.9 1 2.2E-05 53.3 22.1 78 935-1012 205-286 (312)
81 KOG0980 Actin-binding protein 95.9 0.59 1.3E-05 59.9 20.8 28 845-872 353-380 (980)
82 KOG0977 Nuclear envelope prote 95.8 4 8.6E-05 51.2 27.6 28 983-1010 342-369 (546)
83 COG1579 Zn-ribbon protein, pos 95.8 1.4 3E-05 49.7 21.5 50 933-982 95-144 (239)
84 PF00038 Filament: Intermediat 95.8 3.6 7.9E-05 48.9 27.1 11 999-1009 264-274 (312)
85 COG4372 Uncharacterized protei 95.8 4.2 9.2E-05 47.7 25.5 11 1253-1263 471-481 (499)
86 PF04849 HAP1_N: HAP1 N-termin 95.7 1 2.2E-05 52.2 20.6 70 933-1002 233-302 (306)
87 KOG1853 LIS1-interacting prote 95.7 1.2 2.5E-05 49.1 19.7 22 988-1009 162-183 (333)
88 COG4372 Uncharacterized protei 95.7 4 8.6E-05 47.9 24.9 55 943-997 226-280 (499)
89 KOG0996 Structural maintenance 95.7 13 0.00027 50.0 43.2 14 656-669 208-221 (1293)
90 COG3883 Uncharacterized protei 95.7 2 4.4E-05 48.9 22.1 31 882-912 73-103 (265)
91 COG1196 Smc Chromosome segrega 95.6 18 0.00038 51.2 45.7 9 394-402 6-14 (1163)
92 PRK03918 chromosome segregatio 95.6 3.3 7.1E-05 56.8 29.1 14 1419-1432 824-837 (880)
93 KOG0976 Rho/Rac1-interacting s 95.6 3.1 6.7E-05 52.7 24.9 51 946-996 254-304 (1265)
94 KOG0976 Rho/Rac1-interacting s 95.6 11 0.00023 48.2 30.2 22 849-870 283-304 (1265)
95 PF00038 Filament: Intermediat 95.6 7.3 0.00016 46.4 35.0 74 937-1010 212-289 (312)
96 TIGR02168 SMC_prok_B chromosom 95.5 20 0.00042 50.8 48.9 10 659-668 124-133 (1179)
97 smart00015 IQ Short calmodulin 95.4 0.014 3.1E-07 42.1 2.8 21 745-765 3-23 (26)
98 PF09789 DUF2353: Uncharacteri 95.4 5 0.00011 47.2 24.8 134 879-1013 76-219 (319)
99 TIGR00606 rad50 rad50. This fa 95.4 1.3 2.9E-05 62.9 24.6 21 111-131 29-49 (1311)
100 PF15397 DUF4618: Domain of un 95.4 6.2 0.00013 45.0 24.7 36 979-1014 189-224 (258)
101 TIGR00606 rad50 rad50. This fa 95.3 4.9 0.00011 57.3 29.8 7 268-274 141-147 (1311)
102 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.3 2.6 5.7E-05 43.5 20.0 33 980-1012 95-127 (132)
103 COG4942 Membrane-bound metallo 95.2 10 0.00022 46.1 29.3 28 983-1010 217-244 (420)
104 PF10473 CENP-F_leu_zip: Leuci 95.2 1.7 3.6E-05 45.0 18.0 28 955-982 87-114 (140)
105 KOG0999 Microtubule-associated 95.2 3.5 7.5E-05 50.3 22.9 25 883-907 44-68 (772)
106 PF05667 DUF812: Protein of un 95.1 1.6 3.4E-05 56.0 21.6 43 970-1012 441-483 (594)
107 PF08317 Spc7: Spc7 kinetochor 95.1 6.1 0.00013 47.3 25.5 8 632-639 14-21 (325)
108 PF15070 GOLGA2L5: Putative go 95.1 16 0.00035 47.4 31.6 70 937-1006 163-232 (617)
109 KOG0994 Extracellular matrix g 95.0 19 0.00041 48.0 38.2 57 12-82 172-229 (1758)
110 COG5185 HEC1 Protein involved 95.0 3.4 7.4E-05 49.5 21.9 23 809-831 301-323 (622)
111 PF05667 DUF812: Protein of un 95.0 4.8 0.0001 51.8 25.4 17 510-528 79-95 (594)
112 smart00015 IQ Short calmodulin 94.9 0.025 5.3E-07 40.8 2.8 20 720-739 3-22 (26)
113 KOG0980 Actin-binding protein 94.9 18 0.00039 47.1 31.5 10 1395-1404 934-943 (980)
114 KOG1103 Predicted coiled-coil 94.9 3.2 6.8E-05 47.7 20.4 37 975-1011 258-294 (561)
115 PRK01156 chromosome segregatio 94.8 25 0.00053 48.4 36.9 20 1285-1304 733-752 (895)
116 PRK04863 mukB cell division pr 94.8 31 0.00067 49.3 39.2 12 627-638 125-136 (1486)
117 KOG0995 Centromere-associated 94.8 3.3 7.2E-05 51.3 21.8 20 841-860 233-252 (581)
118 KOG4674 Uncharacterized conser 94.8 31 0.00066 49.2 38.1 72 853-924 769-840 (1822)
119 TIGR03185 DNA_S_dndD DNA sulfu 94.8 8.7 0.00019 50.7 27.9 42 968-1009 427-468 (650)
120 PF15619 Lebercilin: Ciliary p 94.7 8.3 0.00018 42.5 23.5 26 937-962 121-146 (194)
121 KOG0963 Transcription factor/C 94.7 16 0.00034 46.2 27.4 40 973-1012 314-359 (629)
122 PF04849 HAP1_N: HAP1 N-termin 94.7 4.9 0.00011 46.9 21.9 10 988-997 274-283 (306)
123 KOG0612 Rho-associated, coiled 94.6 6.3 0.00014 52.8 24.8 71 939-1009 621-693 (1317)
124 PF15070 GOLGA2L5: Putative go 94.6 16 0.00034 47.4 28.4 32 980-1011 199-230 (617)
125 PF13207 AAA_17: AAA domain; P 94.5 0.028 6E-07 56.6 3.2 23 112-134 1-23 (121)
126 PF13851 GAS: Growth-arrest sp 94.4 4.1 9E-05 45.2 20.1 22 883-904 56-77 (201)
127 PRK01156 chromosome segregatio 94.4 4.8 0.0001 55.3 25.2 31 980-1010 413-443 (895)
128 PF10473 CENP-F_leu_zip: Leuci 94.4 4.4 9.6E-05 42.0 18.5 73 939-1011 50-122 (140)
129 KOG4360 Uncharacterized coiled 94.2 3.1 6.7E-05 50.5 19.3 73 938-1010 230-302 (596)
130 PF04091 Sec15: Exocyst comple 94.2 0.36 7.7E-06 57.3 11.9 132 1279-1411 177-311 (311)
131 PF04156 IncA: IncA protein; 94.2 2.2 4.7E-05 47.0 17.4 28 978-1005 160-187 (191)
132 KOG0982 Centrosomal protein Nu 94.2 2.9 6.2E-05 49.7 18.5 30 983-1012 360-389 (502)
133 KOG1003 Actin filament-coating 94.2 8.3 0.00018 41.6 20.3 24 982-1005 164-187 (205)
134 PF15066 CAGE1: Cancer-associa 94.1 13 0.00028 45.0 23.9 16 359-374 50-65 (527)
135 KOG2991 Splicing regulator [RN 94.0 12 0.00027 41.6 23.7 78 934-1011 217-306 (330)
136 PF05701 WEMBL: Weak chloropla 94.0 9.1 0.0002 48.9 24.7 14 937-950 340-353 (522)
137 PF08614 ATG16: Autophagy prot 93.9 0.4 8.7E-06 52.9 11.0 39 974-1012 142-180 (194)
138 COG3883 Uncharacterized protei 93.9 12 0.00026 42.8 22.5 24 882-905 80-103 (265)
139 KOG0946 ER-Golgi vesicle-tethe 93.9 11 0.00024 48.5 24.0 81 933-1013 805-885 (970)
140 PF05911 DUF869: Plant protein 93.8 9.2 0.0002 50.5 24.5 83 932-1014 118-207 (769)
141 KOG0612 Rho-associated, coiled 93.8 33 0.00072 46.5 28.8 26 935-960 624-649 (1317)
142 TIGR01843 type_I_hlyD type I s 93.7 6.8 0.00015 48.6 22.9 21 990-1010 246-266 (423)
143 smart00787 Spc7 Spc7 kinetocho 93.7 8 0.00017 45.9 21.7 14 991-1004 272-285 (312)
144 PF10168 Nup88: Nuclear pore c 93.7 3.6 7.8E-05 54.2 20.7 21 582-602 421-441 (717)
145 KOG0946 ER-Golgi vesicle-tethe 93.6 5.5 0.00012 51.1 20.7 21 315-335 143-163 (970)
146 KOG0977 Nuclear envelope prote 93.6 3.4 7.4E-05 51.8 18.9 20 1137-1156 313-332 (546)
147 KOG0994 Extracellular matrix g 93.5 37 0.00081 45.4 37.6 34 977-1010 1711-1744(1758)
148 COG1340 Uncharacterized archae 93.4 19 0.00041 41.8 25.1 27 935-961 159-185 (294)
149 KOG0964 Structural maintenance 93.4 11 0.00024 49.4 23.2 19 852-870 302-320 (1200)
150 PRK10884 SH3 domain-containing 93.2 1 2.2E-05 49.9 12.6 76 934-1012 93-168 (206)
151 PF15254 CCDC14: Coiled-coil d 93.2 13 0.00027 47.9 22.9 64 941-1011 494-557 (861)
152 PF13401 AAA_22: AAA domain; P 93.2 0.063 1.4E-06 54.7 3.0 29 108-136 2-30 (131)
153 PF05483 SCP-1: Synaptonemal c 93.2 19 0.00041 45.7 24.1 82 934-1015 534-626 (786)
154 TIGR02680 conserved hypothetic 93.0 45 0.00097 47.9 31.2 28 111-138 25-52 (1353)
155 PF13238 AAA_18: AAA domain; P 92.9 0.076 1.6E-06 53.8 3.0 22 113-134 1-22 (129)
156 PTZ00121 MAEBL; Provisional 92.8 53 0.0012 45.2 35.2 101 26-127 162-283 (2084)
157 PRK04778 septation ring format 92.8 14 0.0003 48.0 23.9 13 673-685 59-71 (569)
158 KOG4360 Uncharacterized coiled 92.7 8.2 0.00018 47.1 19.5 70 935-1004 234-303 (596)
159 KOG0963 Transcription factor/C 92.7 31 0.00068 43.6 25.0 19 933-951 248-266 (629)
160 cd02019 NK Nucleoside/nucleoti 92.6 0.11 2.3E-06 47.2 3.2 22 113-134 2-23 (69)
161 PF09730 BicD: Microtubule-ass 92.6 13 0.00028 48.6 22.7 58 952-1009 125-182 (717)
162 PF13191 AAA_16: AAA ATPase do 92.5 0.087 1.9E-06 57.1 3.0 33 105-137 19-51 (185)
163 TIGR02322 phosphon_PhnN phosph 92.5 0.096 2.1E-06 56.9 3.3 25 111-135 2-26 (179)
164 PF14915 CCDC144C: CCDC144C pr 92.4 26 0.00055 40.6 25.1 188 817-1007 99-302 (305)
165 cd00009 AAA The AAA+ (ATPases 92.3 0.17 3.8E-06 51.7 4.9 30 106-135 15-44 (151)
166 PF06785 UPF0242: Uncharacteri 92.2 15 0.00033 42.5 20.0 18 1095-1112 307-324 (401)
167 PF04111 APG6: Autophagy prote 92.2 0.93 2E-05 53.8 11.3 31 980-1010 103-133 (314)
168 PF13870 DUF4201: Domain of un 92.2 20 0.00043 39.0 20.9 22 885-906 45-66 (177)
169 COG0444 DppD ABC-type dipeptid 92.2 0.092 2E-06 61.0 2.8 28 108-135 29-56 (316)
170 PF05010 TACC: Transforming ac 92.1 23 0.0005 39.4 23.8 35 976-1010 161-195 (207)
171 KOG0982 Centrosomal protein Nu 92.0 31 0.00067 41.5 22.6 13 1000-1012 406-418 (502)
172 PRK06696 uridine kinase; Valid 91.8 0.22 4.7E-06 56.3 5.2 39 96-136 10-48 (223)
173 TIGR03015 pepcterm_ATPase puta 91.8 0.17 3.7E-06 58.7 4.5 28 108-135 41-68 (269)
174 PF10186 Atg14: UV radiation r 91.7 6.2 0.00013 46.5 17.7 74 935-1008 71-144 (302)
175 COG0419 SbcC ATPase involved i 91.7 57 0.0012 44.9 29.1 38 1285-1322 740-777 (908)
176 PRK09270 nucleoside triphospha 91.7 0.32 6.9E-06 55.2 6.4 34 106-139 29-62 (229)
177 PF07111 HCR: Alpha helical co 91.6 20 0.00043 45.8 21.9 18 993-1010 245-262 (739)
178 TIGR00150 HI0065_YjeE ATPase, 91.6 0.28 6E-06 50.5 5.3 28 108-135 20-47 (133)
179 PF10481 CENP-F_N: Cenp-F N-te 91.5 8.2 0.00018 43.6 16.5 72 935-1013 61-132 (307)
180 cd00820 PEPCK_HprK Phosphoenol 91.5 0.16 3.4E-06 50.2 3.2 23 109-131 14-36 (107)
181 COG4026 Uncharacterized protei 91.5 2 4.2E-05 46.6 11.4 12 939-950 147-158 (290)
182 TIGR01843 type_I_hlyD type I s 91.5 13 0.00028 46.1 21.1 27 980-1006 243-269 (423)
183 PF09755 DUF2046: Uncharacteri 91.4 34 0.00074 40.0 28.7 19 994-1012 226-244 (310)
184 KOG1937 Uncharacterized conser 91.4 28 0.00061 42.1 21.6 34 980-1013 386-419 (521)
185 PF01583 APS_kinase: Adenylyls 91.4 0.21 4.7E-06 52.8 4.3 29 110-138 2-30 (156)
186 cd01918 HprK_C HprK/P, the bif 91.4 0.16 3.5E-06 53.2 3.3 25 109-133 13-37 (149)
187 PF10481 CENP-F_N: Cenp-F N-te 91.4 18 0.00039 40.9 18.9 81 932-1012 93-191 (307)
188 KOG4673 Transcription factor T 91.3 51 0.0011 41.9 32.3 54 939-992 578-635 (961)
189 PF10174 Cast: RIM-binding pro 91.3 64 0.0014 43.0 34.9 78 934-1011 465-542 (775)
190 PF08614 ATG16: Autophagy prot 91.3 2.4 5.1E-05 46.9 12.6 67 932-998 114-180 (194)
191 KOG0964 Structural maintenance 91.3 21 0.00046 47.0 21.9 46 965-1010 331-376 (1200)
192 PRK05480 uridine/cytidine kina 91.3 0.18 4E-06 56.2 3.9 27 108-134 4-30 (209)
193 PRK13833 conjugal transfer pro 91.2 0.22 4.9E-06 59.0 4.7 34 101-136 137-170 (323)
194 cd01131 PilT Pilus retraction 91.2 0.15 3.3E-06 56.5 3.1 25 112-136 3-27 (198)
195 PF00004 AAA: ATPase family as 91.2 0.15 3.2E-06 51.8 2.8 23 113-135 1-23 (132)
196 PRK00300 gmk guanylate kinase; 91.1 0.15 3.3E-06 56.5 3.1 26 109-134 4-29 (205)
197 COG0194 Gmk Guanylate kinase [ 91.1 0.15 3.3E-06 54.8 2.8 26 109-134 3-28 (191)
198 PF15397 DUF4618: Domain of un 91.1 33 0.00072 39.3 23.7 29 984-1012 187-215 (258)
199 PF00769 ERM: Ezrin/radixin/mo 91.1 9.1 0.0002 43.9 17.3 38 969-1006 75-112 (246)
200 KOG0249 LAR-interacting protei 91.1 14 0.0003 46.9 19.4 20 1330-1357 756-775 (916)
201 COG4026 Uncharacterized protei 91.0 2.6 5.5E-05 45.8 11.7 71 939-1009 133-203 (290)
202 PF04111 APG6: Autophagy prote 91.0 2.7 5.8E-05 50.0 13.4 77 936-1012 45-121 (314)
203 TIGR03007 pepcterm_ChnLen poly 90.9 20 0.00043 45.8 22.2 15 934-948 254-268 (498)
204 PF00485 PRK: Phosphoribulokin 90.9 0.16 3.5E-06 56.0 3.0 26 113-138 2-27 (194)
205 PHA02544 44 clamp loader, smal 90.9 0.29 6.2E-06 58.4 5.3 55 78-134 12-67 (316)
206 COG2433 Uncharacterized conser 90.9 2.5 5.5E-05 52.6 13.0 78 934-1011 429-509 (652)
207 cd02023 UMPK Uridine monophosp 90.8 0.17 3.7E-06 55.9 3.1 22 113-134 2-23 (198)
208 PF10168 Nup88: Nuclear pore c 90.8 28 0.00061 46.1 23.5 60 847-906 604-663 (717)
209 cd01129 PulE-GspE PulE/GspE Th 90.8 0.27 5.8E-06 57.0 4.8 34 101-135 72-105 (264)
210 TIGR03420 DnaA_homol_Hda DnaA 90.7 0.39 8.4E-06 54.1 5.9 40 97-136 25-64 (226)
211 PRK12402 replication factor C 90.6 0.34 7.3E-06 58.2 5.6 57 78-136 6-62 (337)
212 PRK11281 hypothetical protein; 90.6 16 0.00034 50.6 21.6 21 992-1012 287-307 (1113)
213 PLN03188 kinesin-12 family pro 90.6 39 0.00085 46.3 24.3 36 92-127 148-183 (1320)
214 PRK10698 phage shock protein P 90.6 34 0.00075 38.6 21.3 77 933-1009 98-185 (222)
215 KOG0979 Structural maintenance 90.5 43 0.00093 44.7 23.9 21 1068-1088 477-497 (1072)
216 PF13851 GAS: Growth-arrest sp 90.4 14 0.00031 41.0 17.5 42 937-978 89-130 (201)
217 TIGR00235 udk uridine kinase. 90.4 0.24 5.1E-06 55.3 3.8 28 108-135 4-31 (207)
218 PRK05541 adenylylsulfate kinas 90.4 0.2 4.4E-06 54.2 3.1 29 108-136 5-33 (176)
219 KOG2129 Uncharacterized conser 90.3 45 0.00098 39.9 21.6 37 851-887 166-202 (552)
220 smart00382 AAA ATPases associa 90.2 0.2 4.3E-06 50.7 2.8 28 110-137 2-29 (148)
221 PRK08233 hypothetical protein; 90.2 0.18 4E-06 54.6 2.6 25 111-135 4-28 (182)
222 PTZ00301 uridine kinase; Provi 90.2 0.22 4.8E-06 55.6 3.2 23 113-135 6-28 (210)
223 PRK06762 hypothetical protein; 90.1 0.26 5.6E-06 52.7 3.6 24 111-134 3-26 (166)
224 KOG0979 Structural maintenance 90.1 28 0.0006 46.3 21.7 42 967-1008 316-357 (1072)
225 KOG0978 E3 ubiquitin ligase in 90.1 73 0.0016 41.5 37.4 63 950-1012 554-616 (698)
226 PRK07261 topology modulation p 90.0 0.22 4.8E-06 53.8 3.0 23 112-134 2-24 (171)
227 PRK04778 septation ring format 89.9 39 0.00085 43.9 23.7 62 936-997 350-411 (569)
228 PRK06547 hypothetical protein; 89.9 0.46 1E-05 51.4 5.3 29 106-134 11-39 (172)
229 PRK14961 DNA polymerase III su 89.9 0.52 1.1E-05 57.4 6.4 57 78-136 7-64 (363)
230 TIGR02173 cyt_kin_arch cytidyl 89.8 0.22 4.8E-06 53.3 2.8 23 112-134 2-24 (171)
231 PF15619 Lebercilin: Ciliary p 89.8 36 0.00078 37.6 24.6 22 946-967 123-144 (194)
232 cd02020 CMPK Cytidine monophos 89.8 0.25 5.5E-06 51.3 3.1 23 113-135 2-24 (147)
233 cd02028 UMPK_like Uridine mono 89.7 0.26 5.5E-06 53.7 3.2 24 113-136 2-25 (179)
234 cd00227 CPT Chloramphenicol (C 89.7 0.28 6.2E-06 53.1 3.6 25 110-134 2-26 (175)
235 KOG0999 Microtubule-associated 89.7 62 0.0013 40.2 25.1 18 979-996 197-214 (772)
236 COG1660 Predicted P-loop-conta 89.7 0.21 4.6E-06 56.1 2.5 19 112-130 3-21 (286)
237 TIGR01005 eps_transp_fam exopo 89.7 34 0.00073 46.2 23.8 13 656-668 84-96 (754)
238 KOG0804 Cytoplasmic Zn-finger 89.6 12 0.00025 45.3 16.6 25 986-1010 424-448 (493)
239 TIGR02782 TrbB_P P-type conjug 89.5 0.37 7.9E-06 57.0 4.6 27 110-136 132-158 (299)
240 PRK08118 topology modulation p 89.4 0.29 6.2E-06 52.7 3.3 25 111-135 2-26 (167)
241 KOG1003 Actin filament-coating 89.4 36 0.00078 37.0 22.7 72 937-1008 126-197 (205)
242 PF08826 DMPK_coil: DMPK coile 89.4 5.1 0.00011 35.4 10.1 45 960-1004 16-60 (61)
243 PRK00131 aroK shikimate kinase 89.3 0.32 6.9E-06 52.2 3.6 26 109-134 3-28 (175)
244 PRK08084 DNA replication initi 89.3 0.58 1.2E-05 53.4 5.8 40 97-136 32-71 (235)
245 cd02025 PanK Pantothenate kina 89.3 0.28 6E-06 55.4 3.2 24 113-136 2-25 (220)
246 PF03668 ATP_bind_2: P-loop AT 89.1 0.26 5.7E-06 56.7 2.9 20 111-130 2-21 (284)
247 PLN03025 replication factor C 89.1 0.49 1.1E-05 56.5 5.3 56 78-135 4-59 (319)
248 PF07724 AAA_2: AAA domain (Cd 89.1 0.35 7.5E-06 52.3 3.6 24 112-135 5-28 (171)
249 COG5185 HEC1 Protein involved 89.1 63 0.0014 39.4 25.0 32 967-998 373-404 (622)
250 KOG1937 Uncharacterized conser 89.0 59 0.0013 39.5 21.7 78 934-1011 345-424 (521)
251 PRK10078 ribose 1,5-bisphospho 89.0 0.25 5.4E-06 54.1 2.5 24 111-134 3-26 (186)
252 KOG0018 Structural maintenance 89.0 1E+02 0.0022 41.7 35.5 39 746-784 211-249 (1141)
253 COG1340 Uncharacterized archae 88.9 52 0.0011 38.3 29.0 67 943-1009 181-247 (294)
254 PF10186 Atg14: UV radiation r 88.9 9.5 0.00021 44.9 16.1 78 933-1010 62-139 (302)
255 cd01130 VirB11-like_ATPase Typ 88.9 0.29 6.3E-06 53.6 2.9 26 110-135 25-50 (186)
256 KOG2129 Uncharacterized conser 88.9 56 0.0012 39.1 21.0 26 934-959 253-278 (552)
257 PRK14737 gmk guanylate kinase; 88.9 0.28 6.2E-06 53.7 2.8 26 109-134 3-28 (186)
258 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.7 32 0.00069 35.5 20.6 59 938-999 70-128 (132)
259 cd00071 GMPK Guanosine monopho 88.7 0.27 5.8E-06 51.1 2.4 22 113-134 2-23 (137)
260 PF00910 RNA_helicase: RNA hel 88.7 0.34 7.3E-06 48.0 3.0 25 113-137 1-25 (107)
261 TIGR01313 therm_gnt_kin carboh 88.7 0.25 5.5E-06 52.7 2.2 23 113-135 1-23 (163)
262 PRK00889 adenylylsulfate kinas 88.6 0.48 1.1E-05 51.2 4.4 29 109-137 3-31 (175)
263 cd02024 NRK1 Nicotinamide ribo 88.5 0.31 6.7E-06 53.4 2.8 22 113-134 2-23 (187)
264 TIGR00554 panK_bact pantothena 88.5 0.88 1.9E-05 53.3 6.6 31 107-137 59-89 (290)
265 PF13245 AAA_19: Part of AAA d 88.5 0.59 1.3E-05 43.3 4.2 28 109-136 9-36 (76)
266 PF04437 RINT1_TIP1: RINT-1 / 88.4 14 0.00031 46.9 18.1 123 1280-1408 354-491 (494)
267 PF05729 NACHT: NACHT domain 88.3 0.39 8.5E-06 50.7 3.4 27 112-138 2-28 (166)
268 PRK13851 type IV secretion sys 88.3 0.4 8.6E-06 57.6 3.7 27 109-135 161-187 (344)
269 COG4608 AppF ABC-type oligopep 88.2 0.33 7.1E-06 55.4 2.8 31 109-139 38-68 (268)
270 PF12846 AAA_10: AAA-like doma 88.0 0.42 9.1E-06 56.1 3.7 29 110-138 1-29 (304)
271 KOG4593 Mitotic checkpoint pro 88.0 94 0.002 40.1 33.2 24 1393-1416 632-662 (716)
272 COG1102 Cmk Cytidylate kinase 88.0 0.39 8.5E-06 50.3 2.9 24 113-136 3-26 (179)
273 TIGR01420 pilT_fam pilus retra 88.0 0.36 7.7E-06 58.3 3.1 34 101-135 114-147 (343)
274 PRK12377 putative replication 87.9 0.76 1.6E-05 52.7 5.6 44 92-137 85-128 (248)
275 cd02027 APSK Adenosine 5'-phos 87.9 0.42 9E-06 50.4 3.2 24 113-136 2-25 (149)
276 TIGR02524 dot_icm_DotB Dot/Icm 87.9 0.37 8.1E-06 58.3 3.2 28 109-136 133-160 (358)
277 TIGR02977 phageshock_pspA phag 87.9 53 0.0011 37.1 21.7 76 932-1007 97-183 (219)
278 PF10205 KLRAQ: Predicted coil 87.8 9.3 0.0002 37.2 11.8 70 939-1008 3-72 (102)
279 PRK14956 DNA polymerase III su 87.8 0.63 1.4E-05 57.8 5.2 55 79-137 10-67 (484)
280 PRK14738 gmk guanylate kinase; 87.8 0.41 8.9E-06 53.4 3.3 26 108-133 11-36 (206)
281 TIGR03263 guanyl_kin guanylate 87.8 0.31 6.7E-06 52.9 2.2 25 111-135 2-26 (180)
282 PF15254 CCDC14: Coiled-coil d 87.7 41 0.00089 43.6 20.4 39 973-1011 512-550 (861)
283 PRK13900 type IV secretion sys 87.7 0.54 1.2E-05 56.3 4.4 25 111-135 161-185 (332)
284 PRK06217 hypothetical protein; 87.7 0.38 8.2E-06 52.5 2.8 24 112-135 3-26 (183)
285 PF13671 AAA_33: AAA domain; P 87.7 0.33 7.1E-06 50.3 2.3 23 113-135 2-24 (143)
286 PRK00440 rfc replication facto 87.6 0.7 1.5E-05 55.0 5.3 56 78-135 8-63 (319)
287 COG4172 ABC-type uncharacteriz 87.5 0.3 6.4E-06 58.0 1.9 28 110-137 36-63 (534)
288 KOG4403 Cell surface glycoprot 87.5 25 0.00054 42.1 17.2 17 854-870 256-272 (575)
289 PF12777 MT: Microtubule-bindi 87.5 30 0.00064 41.9 19.1 42 970-1011 229-270 (344)
290 TIGR02928 orc1/cdc6 family rep 87.5 0.6 1.3E-05 56.8 4.7 36 101-136 31-66 (365)
291 PF14197 Cep57_CLD_2: Centroso 87.4 6.7 0.00015 35.6 10.1 62 939-1000 3-64 (69)
292 TIGR03007 pepcterm_ChnLen poly 87.4 24 0.00051 45.0 19.2 11 888-898 210-220 (498)
293 PF09304 Cortex-I_coil: Cortex 87.3 19 0.00041 35.3 13.4 56 939-994 21-76 (107)
294 PF00769 ERM: Ezrin/radixin/mo 87.3 19 0.00041 41.4 16.3 26 979-1004 92-117 (246)
295 COG0529 CysC Adenylylsulfate k 87.2 0.85 1.8E-05 48.6 4.9 34 106-139 19-52 (197)
296 PRK09111 DNA polymerase III su 87.2 0.74 1.6E-05 59.3 5.5 58 78-137 15-73 (598)
297 PRK03846 adenylylsulfate kinas 87.1 0.7 1.5E-05 51.2 4.6 32 106-137 20-51 (198)
298 TIGR02525 plasmid_TraJ plasmid 87.1 0.45 9.7E-06 57.7 3.2 27 110-136 149-175 (372)
299 PRK08903 DnaA regulatory inact 87.0 1.1 2.3E-05 50.8 6.1 30 108-137 40-69 (227)
300 cd00464 SK Shikimate kinase (S 87.0 0.45 9.8E-06 49.9 2.9 24 112-135 1-24 (154)
301 PRK10751 molybdopterin-guanine 86.8 0.53 1.1E-05 50.8 3.3 26 112-137 8-33 (173)
302 PRK12704 phosphodiesterase; Pr 86.8 1E+02 0.0023 39.4 24.8 15 1366-1380 415-429 (520)
303 COG0572 Udk Uridine kinase [Nu 86.7 0.51 1.1E-05 52.4 3.1 23 113-135 11-33 (218)
304 KOG4593 Mitotic checkpoint pro 86.6 1.1E+02 0.0024 39.5 30.8 21 792-812 85-105 (716)
305 PF00437 T2SE: Type II/IV secr 86.6 0.44 9.6E-06 55.4 2.8 28 109-136 126-153 (270)
306 PRK06645 DNA polymerase III su 86.6 0.83 1.8E-05 57.7 5.3 57 79-137 13-70 (507)
307 KOG4460 Nuclear pore complex, 86.6 71 0.0015 39.7 20.6 29 982-1010 708-736 (741)
308 cd01120 RecA-like_NTPases RecA 86.5 0.57 1.2E-05 49.2 3.4 24 113-136 2-25 (165)
309 PRK05896 DNA polymerase III su 86.5 1 2.2E-05 57.5 6.0 59 78-138 7-66 (605)
310 PRK14964 DNA polymerase III su 86.4 0.75 1.6E-05 57.7 4.7 57 78-138 4-63 (491)
311 COG1125 OpuBA ABC-type proline 86.4 0.46 1E-05 53.4 2.5 26 111-136 28-53 (309)
312 PF10146 zf-C4H2: Zinc finger- 86.3 27 0.00058 39.6 16.4 38 935-972 40-77 (230)
313 KOG4807 F-actin binding protei 86.2 52 0.0011 38.9 18.6 165 842-1008 297-481 (593)
314 PF03205 MobB: Molybdopterin g 86.2 0.63 1.4E-05 48.5 3.4 27 112-138 2-28 (140)
315 PF09738 DUF2051: Double stran 86.1 48 0.001 39.2 18.9 63 937-999 101-163 (302)
316 PF01576 Myosin_tail_1: Myosin 86.0 0.23 5E-06 66.8 0.0 80 933-1012 425-504 (859)
317 TIGR01000 bacteriocin_acc bact 86.0 53 0.0012 41.4 21.0 24 987-1010 288-311 (457)
318 KOG4809 Rab6 GTPase-interactin 86.0 69 0.0015 39.9 20.2 80 932-1011 329-408 (654)
319 cd02021 GntK Gluconate kinase 85.9 0.53 1.2E-05 49.4 2.7 22 113-134 2-23 (150)
320 PRK13764 ATPase; Provisional 85.8 0.67 1.4E-05 59.4 4.0 27 110-136 257-283 (602)
321 TIGR02902 spore_lonB ATP-depen 85.8 0.93 2E-05 58.0 5.3 32 104-135 80-111 (531)
322 PF13870 DUF4201: Domain of un 85.8 51 0.0011 35.8 18.1 33 934-966 42-74 (177)
323 PRK09825 idnK D-gluconate kina 85.8 0.66 1.4E-05 50.4 3.4 26 110-135 3-28 (176)
324 PRK05057 aroK shikimate kinase 85.8 0.64 1.4E-05 50.3 3.3 25 110-134 4-28 (172)
325 PF10146 zf-C4H2: Zinc finger- 85.8 27 0.00058 39.6 16.1 73 933-1012 31-103 (230)
326 KOG1103 Predicted coiled-coil 85.8 78 0.0017 36.9 23.0 55 955-1010 245-299 (561)
327 KOG4809 Rab6 GTPase-interactin 85.8 67 0.0014 40.0 19.9 36 843-878 331-366 (654)
328 PF03266 NTPase_1: NTPase; In 85.7 0.64 1.4E-05 50.1 3.2 24 113-136 2-25 (168)
329 COG1123 ATPase components of v 85.7 0.46 1E-05 59.4 2.4 29 109-137 34-62 (539)
330 COG1124 DppF ABC-type dipeptid 85.7 0.62 1.3E-05 52.2 3.1 29 108-136 31-59 (252)
331 TIGR01005 eps_transp_fam exopo 85.7 1.5E+02 0.0032 40.0 29.7 16 1390-1405 659-674 (754)
332 PF13514 AAA_27: AAA domain 85.6 1.8E+02 0.004 41.1 37.6 23 115-137 1-23 (1111)
333 COG0563 Adk Adenylate kinase a 85.6 0.62 1.4E-05 50.7 3.1 22 113-134 3-24 (178)
334 PRK13342 recombination factor 85.5 0.97 2.1E-05 56.1 5.1 43 91-134 18-60 (413)
335 PRK00411 cdc6 cell division co 85.4 0.94 2E-05 55.7 5.0 34 103-136 48-81 (394)
336 PF02367 UPF0079: Uncharacteri 85.4 0.69 1.5E-05 47.0 3.0 27 108-134 13-39 (123)
337 PHA00729 NTP-binding motif con 85.3 1.2 2.7E-05 50.0 5.3 29 107-135 14-42 (226)
338 TIGR01360 aden_kin_iso1 adenyl 85.3 0.65 1.4E-05 50.5 3.2 23 112-134 5-27 (188)
339 PRK06893 DNA replication initi 85.2 1.3 2.9E-05 50.2 5.7 40 97-137 27-66 (229)
340 PF03962 Mnd1: Mnd1 family; I 85.2 8.3 0.00018 42.4 11.5 80 934-1014 69-152 (188)
341 TIGR02533 type_II_gspE general 85.2 0.8 1.7E-05 57.8 4.2 35 100-135 233-267 (486)
342 PRK04182 cytidylate kinase; Pr 85.2 0.61 1.3E-05 50.3 2.8 23 112-134 2-24 (180)
343 PTZ00112 origin recognition co 85.1 1.2 2.7E-05 58.1 5.8 45 93-137 764-808 (1164)
344 PF07475 Hpr_kinase_C: HPr Ser 85.1 0.66 1.4E-05 49.5 2.9 23 110-132 18-40 (171)
345 PRK14955 DNA polymerase III su 85.1 1.2 2.7E-05 54.8 5.7 56 79-136 8-64 (397)
346 PLN03188 kinesin-12 family pro 85.0 1.4E+02 0.0031 41.2 24.3 13 429-441 459-471 (1320)
347 COG2884 FtsE Predicted ATPase 85.0 0.65 1.4E-05 50.1 2.7 26 109-134 27-52 (223)
348 cd02029 PRK_like Phosphoribulo 84.9 0.77 1.7E-05 52.7 3.5 24 113-136 2-25 (277)
349 PF13555 AAA_29: P-loop contai 84.9 0.96 2.1E-05 40.1 3.3 23 112-134 25-47 (62)
350 KOG1962 B-cell receptor-associ 84.8 6.8 0.00015 43.4 10.4 34 939-972 149-182 (216)
351 PRK04040 adenylate kinase; Pro 84.7 0.7 1.5E-05 50.8 3.0 25 111-135 3-27 (188)
352 PF11559 ADIP: Afadin- and alp 84.7 16 0.00036 38.5 13.3 60 937-996 62-121 (151)
353 PRK07667 uridine kinase; Provi 84.7 1.2 2.7E-05 49.0 5.0 26 111-136 18-43 (193)
354 PRK14527 adenylate kinase; Pro 84.6 0.79 1.7E-05 50.4 3.4 28 108-135 4-31 (191)
355 PRK08727 hypothetical protein; 84.5 1.4 3.1E-05 50.1 5.6 31 107-137 38-68 (233)
356 PRK14957 DNA polymerase III su 84.4 1.4 3E-05 56.2 5.8 58 78-137 7-65 (546)
357 PF03215 Rad17: Rad17 cell cyc 84.4 0.98 2.1E-05 57.2 4.5 59 77-135 9-70 (519)
358 COG2805 PilT Tfp pilus assembl 84.4 0.77 1.7E-05 52.8 3.2 78 48-136 70-151 (353)
359 PF05911 DUF869: Plant protein 84.3 94 0.002 41.5 22.2 17 1283-1299 511-527 (769)
360 COG4172 ABC-type uncharacteriz 84.3 0.59 1.3E-05 55.6 2.3 31 107-137 310-340 (534)
361 KOG4403 Cell surface glycoprot 84.3 1E+02 0.0023 37.1 22.6 12 700-711 117-128 (575)
362 COG4477 EzrA Negative regulato 84.3 1.2E+02 0.0027 37.9 24.3 16 672-687 57-72 (570)
363 KOG0288 WD40 repeat protein Ti 84.2 44 0.00095 40.2 17.1 14 854-867 10-23 (459)
364 PRK05342 clpX ATP-dependent pr 84.2 1.5 3.2E-05 54.2 5.7 63 72-134 59-132 (412)
365 KOG0249 LAR-interacting protei 84.1 71 0.0015 41.0 19.6 7 999-1005 300-306 (916)
366 PRK15422 septal ring assembly 84.0 17 0.00036 33.6 10.7 10 1002-1011 51-60 (79)
367 PF00308 Bac_DnaA: Bacterial d 83.9 1.6 3.4E-05 49.2 5.5 41 97-137 19-61 (219)
368 PRK06761 hypothetical protein; 83.9 0.73 1.6E-05 53.7 2.8 26 111-136 4-29 (282)
369 PF09730 BicD: Microtubule-ass 83.8 77 0.0017 41.7 20.9 49 934-982 97-148 (717)
370 PF09789 DUF2353: Uncharacteri 83.8 1E+02 0.0022 36.6 23.1 18 887-904 77-94 (319)
371 TIGR01000 bacteriocin_acc bact 83.8 1.3E+02 0.0027 38.1 22.9 16 984-999 292-307 (457)
372 PF05010 TACC: Transforming ac 83.8 79 0.0017 35.3 23.1 24 978-1001 177-200 (207)
373 PRK13894 conjugal transfer ATP 83.7 0.84 1.8E-05 54.3 3.3 27 110-136 148-174 (319)
374 cd03115 SRP The signal recogni 83.6 1.1 2.4E-05 48.3 3.9 27 112-138 2-28 (173)
375 PF09755 DUF2046: Uncharacteri 83.5 1E+02 0.0022 36.3 32.7 12 1000-1011 264-275 (310)
376 PF07728 AAA_5: AAA domain (dy 83.5 0.87 1.9E-05 47.1 3.0 22 113-134 2-23 (139)
377 COG3074 Uncharacterized protei 83.4 21 0.00046 31.8 10.6 27 946-972 23-49 (79)
378 PRK05416 glmZ(sRNA)-inactivati 83.4 0.8 1.7E-05 53.7 2.9 22 110-131 6-27 (288)
379 PRK00106 hypothetical protein; 83.3 71 0.0015 40.8 20.0 8 1122-1129 303-310 (535)
380 PF10498 IFT57: Intra-flagella 83.3 21 0.00045 43.3 14.7 8 599-606 62-69 (359)
381 PRK15453 phosphoribulokinase; 83.3 0.91 2E-05 52.5 3.2 25 110-134 5-29 (290)
382 PRK08356 hypothetical protein; 83.3 0.77 1.7E-05 50.7 2.6 22 111-132 6-27 (195)
383 PRK10929 putative mechanosensi 83.1 1.2E+02 0.0027 42.2 23.3 22 936-957 175-196 (1109)
384 PRK08116 hypothetical protein; 83.0 2 4.2E-05 50.1 5.9 46 92-137 95-141 (268)
385 TIGR03499 FlhF flagellar biosy 82.9 1.1 2.5E-05 52.4 4.0 45 93-137 169-221 (282)
386 cd02034 CooC The accessory pro 82.9 1.2 2.7E-05 44.8 3.7 25 113-137 2-26 (116)
387 TIGR02903 spore_lon_C ATP-depe 82.9 1.6 3.5E-05 56.8 5.7 36 102-137 167-202 (615)
388 COG1382 GimC Prefoldin, chaper 82.9 23 0.00049 35.7 12.2 38 973-1010 74-111 (119)
389 PRK14732 coaE dephospho-CoA ki 82.9 1 2.3E-05 49.8 3.4 48 113-165 2-54 (196)
390 PRK04220 2-phosphoglycerate ki 82.8 1.5 3.2E-05 51.4 4.8 27 108-134 90-116 (301)
391 COG0802 Predicted ATPase or ki 82.8 2.3 4.9E-05 44.5 5.6 29 108-136 23-51 (149)
392 TIGR00064 ftsY signal recognit 82.8 2.2 4.7E-05 49.8 6.2 46 93-138 46-100 (272)
393 PRK14962 DNA polymerase III su 82.8 1.8 3.9E-05 54.4 5.8 54 79-136 6-62 (472)
394 TIGR00455 apsK adenylylsulfate 82.8 1.6 3.4E-05 47.7 4.7 29 108-136 16-44 (184)
395 TIGR02881 spore_V_K stage V sp 82.8 1.1 2.3E-05 52.1 3.6 31 108-138 40-70 (261)
396 COG2433 Uncharacterized conser 82.7 22 0.00048 44.7 14.7 71 933-1003 435-508 (652)
397 TIGR02868 CydC thiol reductant 82.7 0.69 1.5E-05 59.4 2.2 28 108-135 359-386 (529)
398 PRK00698 tmk thymidylate kinas 82.7 1.3 2.8E-05 49.0 4.1 28 110-137 3-30 (205)
399 PRK11308 dppF dipeptide transp 82.6 0.95 2.1E-05 54.3 3.2 27 108-134 39-65 (327)
400 PF04665 Pox_A32: Poxvirus A32 82.6 0.96 2.1E-05 51.4 3.0 25 112-136 15-39 (241)
401 PRK15093 antimicrobial peptide 82.6 0.96 2.1E-05 54.3 3.3 27 108-134 31-57 (330)
402 PRK14974 cell division protein 82.5 1.9 4.2E-05 51.6 5.7 31 108-138 138-168 (336)
403 KOG0056 Heavy metal exporter H 82.5 1.2 2.5E-05 54.0 3.7 41 109-149 563-603 (790)
404 PRK06835 DNA replication prote 82.5 2.4 5.2E-05 50.8 6.4 46 92-137 160-210 (329)
405 cd03293 ABC_NrtD_SsuB_transpor 82.5 0.97 2.1E-05 50.8 3.0 27 108-134 28-54 (220)
406 PF07106 TBPIP: Tat binding pr 82.4 14 0.00031 39.8 11.9 64 933-996 71-136 (169)
407 TIGR01359 UMP_CMP_kin_fam UMP- 82.4 0.98 2.1E-05 49.1 3.0 23 113-135 2-24 (183)
408 TIGR00176 mobB molybdopterin-g 82.4 1.2 2.6E-05 47.3 3.5 25 113-137 2-26 (155)
409 PRK09112 DNA polymerase III su 82.4 1.8 3.8E-05 52.4 5.4 40 97-136 31-71 (351)
410 PRK14969 DNA polymerase III su 82.3 1.8 4E-05 55.2 5.8 55 78-136 7-64 (527)
411 PF03193 DUF258: Protein of un 82.3 1.2 2.6E-05 47.5 3.4 25 109-133 34-58 (161)
412 PRK15177 Vi polysaccharide exp 82.3 1 2.2E-05 50.5 3.2 27 108-134 11-37 (213)
413 PF00625 Guanylate_kin: Guanyl 82.3 1.1 2.5E-05 48.8 3.4 26 110-135 2-27 (183)
414 TIGR01166 cbiO cobalt transpor 82.2 1.1 2.3E-05 49.2 3.2 26 108-133 16-41 (190)
415 PF06818 Fez1: Fez1; InterPro 82.2 36 0.00079 37.5 14.6 25 881-905 30-54 (202)
416 TIGR02673 FtsE cell division A 82.2 1 2.3E-05 50.3 3.2 27 108-134 26-52 (214)
417 PRK14528 adenylate kinase; Pro 82.1 1.2 2.5E-05 48.9 3.4 24 111-134 2-25 (186)
418 TIGR00960 3a0501s02 Type II (G 82.0 1.1 2.3E-05 50.3 3.2 27 108-134 27-53 (216)
419 TIGR00634 recN DNA repair prot 82.0 1.6E+02 0.0034 38.4 23.2 29 984-1012 347-375 (563)
420 COG4088 Predicted nucleotide k 82.0 1.4 3.1E-05 48.0 3.9 103 112-223 3-111 (261)
421 COG4619 ABC-type uncharacteriz 82.0 1 2.2E-05 47.6 2.6 26 109-134 28-53 (223)
422 PRK09473 oppD oligopeptide tra 82.0 0.97 2.1E-05 54.3 3.0 27 108-134 40-66 (330)
423 PRK15079 oligopeptide ABC tran 82.0 1 2.2E-05 54.1 3.2 27 108-134 45-71 (331)
424 PF00005 ABC_tran: ABC transpo 81.9 1 2.2E-05 46.4 2.7 27 109-135 10-36 (137)
425 PRK03839 putative kinase; Prov 81.9 1.1 2.4E-05 48.7 3.1 24 112-135 2-25 (180)
426 KOG1962 B-cell receptor-associ 81.9 22 0.00048 39.5 12.9 26 944-969 161-186 (216)
427 PRK05537 bifunctional sulfate 81.9 1.4 2.9E-05 56.8 4.4 44 91-136 375-418 (568)
428 PRK13341 recombination factor 81.8 1.8 3.9E-05 57.1 5.5 36 99-134 41-76 (725)
429 cd03260 ABC_PstB_phosphate_tra 81.8 1.1 2.4E-05 50.5 3.3 27 108-134 24-50 (227)
430 PF10226 DUF2216: Uncharacteri 81.8 44 0.00096 36.1 14.5 35 979-1013 104-138 (195)
431 PRK10416 signal recognition pa 81.8 1.4 3.1E-05 52.4 4.3 31 108-138 112-142 (318)
432 TIGR03574 selen_PSTK L-seryl-t 81.8 1.1 2.3E-05 51.6 3.2 24 113-136 2-25 (249)
433 TIGR02788 VirB11 P-type DNA tr 81.8 0.86 1.9E-05 54.2 2.4 27 109-135 143-169 (308)
434 COG1493 HprK Serine kinase of 81.8 1.1 2.4E-05 51.6 3.2 25 110-134 145-169 (308)
435 COG2274 SunT ABC-type bacterio 81.7 0.8 1.7E-05 60.1 2.3 30 108-137 497-526 (709)
436 PRK10646 ADP-binding protein; 81.7 2.6 5.7E-05 44.5 5.7 26 110-135 28-53 (153)
437 cd03225 ABC_cobalt_CbiO_domain 81.6 1.2 2.5E-05 49.8 3.3 26 109-134 26-51 (211)
438 PF10234 Cluap1: Clusterin-ass 81.5 45 0.00098 38.5 15.7 15 625-639 2-16 (267)
439 PRK14531 adenylate kinase; Pro 81.4 1.3 2.8E-05 48.4 3.4 25 111-135 3-27 (183)
440 cd03259 ABC_Carb_Solutes_like 81.4 1.2 2.6E-05 49.8 3.3 27 108-134 24-50 (213)
441 PRK14970 DNA polymerase III su 81.4 2.6 5.6E-05 51.5 6.4 57 78-136 8-65 (367)
442 PF14197 Cep57_CLD_2: Centroso 81.3 19 0.00042 32.7 10.2 64 945-1008 2-65 (69)
443 TIGR02880 cbbX_cfxQ probable R 81.3 1.2 2.7E-05 52.2 3.5 28 112-139 60-87 (284)
444 cd03255 ABC_MJ0796_Lo1CDE_FtsE 81.2 1.2 2.6E-05 50.0 3.2 27 108-134 28-54 (218)
445 PHA02530 pseT polynucleotide k 81.2 1.1 2.4E-05 53.0 3.0 24 111-134 3-26 (300)
446 PRK11281 hypothetical protein; 81.2 2.5E+02 0.0055 39.3 30.4 15 988-1002 290-304 (1113)
447 PRK14958 DNA polymerase III su 81.1 2.3 4.9E-05 54.1 5.9 56 78-137 7-65 (509)
448 PRK04195 replication factor C 81.0 1.4 3.1E-05 55.7 4.2 57 78-134 5-63 (482)
449 PRK14960 DNA polymerase III su 81.0 2.2 4.7E-05 54.9 5.6 54 79-136 7-63 (702)
450 PF05557 MAD: Mitotic checkpoi 81.0 0.49 1.1E-05 62.9 0.0 9 1403-1411 655-663 (722)
451 PRK11022 dppD dipeptide transp 81.0 1.2 2.5E-05 53.5 3.1 28 108-135 31-58 (326)
452 COG1123 ATPase components of v 81.0 1.1 2.5E-05 56.0 3.1 29 108-136 315-343 (539)
453 cd01983 Fer4_NifH The Fer4_Nif 80.9 1.6 3.4E-05 41.3 3.5 25 113-137 2-26 (99)
454 PRK13768 GTPase; Provisional 80.9 1.5 3.2E-05 50.7 3.8 27 112-138 4-30 (253)
455 PF01695 IstB_IS21: IstB-like 80.9 2.3 4.9E-05 46.3 5.1 30 108-137 45-74 (178)
456 PRK06620 hypothetical protein; 80.9 2.1 4.6E-05 48.1 5.0 21 111-131 45-65 (214)
457 PF00158 Sigma54_activat: Sigm 80.9 1.1 2.4E-05 48.2 2.7 25 108-132 20-44 (168)
458 KOG1899 LAR transmembrane tyro 80.8 61 0.0013 40.8 17.1 23 1335-1357 706-728 (861)
459 PRK06921 hypothetical protein; 80.8 1.5 3.3E-05 50.9 4.0 28 109-136 116-143 (266)
460 cd03116 MobB Molybdenum is an 80.8 1.6 3.5E-05 46.5 3.9 28 111-138 2-29 (159)
461 TIGR03608 L_ocin_972_ABC putat 80.8 1.2 2.7E-05 49.3 3.1 26 109-134 23-48 (206)
462 PLN02939 transferase, transfer 80.8 1.1E+02 0.0024 41.6 21.1 28 1402-1431 852-880 (977)
463 PLN02796 D-glycerate 3-kinase 80.7 1.2 2.6E-05 53.1 3.1 24 112-135 102-125 (347)
464 cd03292 ABC_FtsE_transporter F 80.7 1.3 2.7E-05 49.6 3.2 27 108-134 25-51 (214)
465 COG2204 AtoC Response regulato 80.7 1.4 3E-05 54.6 3.7 62 108-181 162-233 (464)
466 cd03296 ABC_CysA_sulfate_impor 80.7 1.3 2.7E-05 50.6 3.2 27 108-134 26-52 (239)
467 KOG3354 Gluconate kinase [Carb 80.6 1.4 3E-05 45.9 3.0 25 111-135 13-37 (191)
468 PRK14950 DNA polymerase III su 80.6 2.3 5E-05 55.2 5.9 57 79-137 8-65 (585)
469 TIGR00678 holB DNA polymerase 80.6 2.3 5E-05 46.5 5.1 37 101-137 4-41 (188)
470 cd03229 ABC_Class3 This class 80.6 1.4 2.9E-05 47.9 3.3 27 108-134 24-50 (178)
471 cd02026 PRK Phosphoribulokinas 80.5 1.2 2.6E-05 51.9 3.0 22 113-134 2-23 (273)
472 COG1126 GlnQ ABC-type polar am 80.5 1.3 2.9E-05 48.8 3.1 20 109-128 27-46 (240)
473 cd03258 ABC_MetN_methionine_tr 80.4 1.3 2.9E-05 50.2 3.2 27 108-134 29-55 (233)
474 KOG0243 Kinesin-like protein [ 80.4 1.7E+02 0.0036 40.0 22.1 20 267-286 99-118 (1041)
475 PF07889 DUF1664: Protein of u 80.4 21 0.00046 36.4 11.3 64 940-1003 60-123 (126)
476 cd01124 KaiC KaiC is a circadi 80.3 1.4 3.1E-05 47.8 3.4 27 112-138 1-27 (187)
477 cd03235 ABC_Metallic_Cations A 80.3 1.2 2.7E-05 49.7 2.9 27 108-134 23-49 (213)
478 PF05262 Borrelia_P83: Borreli 80.3 1.1E+02 0.0025 38.5 19.8 14 604-617 21-34 (489)
479 PRK12704 phosphodiesterase; Pr 80.3 1.8E+02 0.004 37.2 23.3 13 1119-1131 285-297 (520)
480 PRK11176 lipid transporter ATP 80.3 1.1 2.4E-05 58.2 2.9 28 108-135 367-394 (582)
481 PRK12608 transcription termina 80.3 1.7 3.6E-05 52.4 4.1 43 94-136 117-159 (380)
482 PRK06305 DNA polymerase III su 80.3 2.6 5.6E-05 52.9 6.0 58 78-137 8-66 (451)
483 PRK10246 exonuclease subunit S 80.3 2E+02 0.0043 40.4 24.6 177 835-1011 667-864 (1047)
484 PRK10436 hypothetical protein; 80.2 1.2 2.6E-05 55.6 3.0 34 101-135 210-243 (462)
485 KOG0243 Kinesin-like protein [ 80.2 1.9E+02 0.004 39.5 22.5 144 849-1009 403-551 (1041)
486 PF09304 Cortex-I_coil: Cortex 80.2 64 0.0014 31.8 16.0 106 882-1004 2-107 (107)
487 PRK10361 DNA recombination pro 80.2 1.7E+02 0.0037 36.8 30.3 187 795-1007 9-196 (475)
488 smart00072 GuKc Guanylate kina 80.1 1.3 2.7E-05 48.5 2.8 20 113-132 5-24 (184)
489 PRK00023 cmk cytidylate kinase 80.0 1.4 3E-05 49.9 3.2 22 113-134 7-28 (225)
490 PF05701 WEMBL: Weak chloropla 79.9 1.9E+02 0.0042 37.1 36.5 263 735-1010 67-357 (522)
491 PRK14963 DNA polymerase III su 79.7 2.4 5.1E-05 53.8 5.4 55 79-134 6-60 (504)
492 TIGR03319 YmdA_YtgF conserved 79.7 1.9E+02 0.0041 37.0 24.8 173 795-971 10-186 (514)
493 PF01576 Myosin_tail_1: Myosin 79.7 0.58 1.3E-05 63.1 0.0 174 837-1012 26-216 (859)
494 cd03224 ABC_TM1139_LivF_branch 79.7 1.5 3.1E-05 49.4 3.2 24 108-131 24-47 (222)
495 cd03223 ABCD_peroxisomal_ALDP 79.7 1.5 3.3E-05 47.0 3.2 24 108-131 25-48 (166)
496 PRK09087 hypothetical protein; 79.7 2.3 5E-05 48.1 4.9 36 98-133 30-67 (226)
497 cd03256 ABC_PhnC_transporter A 79.6 1.4 3.1E-05 50.1 3.2 24 108-131 25-48 (241)
498 PRK05428 HPr kinase/phosphoryl 79.6 1.4 3E-05 51.7 3.1 21 112-132 148-168 (308)
499 TIGR03864 PQQ_ABC_ATP ABC tran 79.6 1.5 3.2E-05 50.0 3.2 24 108-131 25-48 (236)
500 PRK11124 artP arginine transpo 79.6 1.5 3.1E-05 50.2 3.2 24 108-131 26-49 (242)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=6e-231 Score=2135.53 Aligned_cols=1312 Identities=35% Similarity=0.533 Sum_probs=1022.2
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHH
Q 000453 22 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 101 (1491)
Q Consensus 22 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 101 (1491)
.+++||||.|+|||||+|||||++||..++||||+|.||||||||..+| ||++++++.|++++..+++|||||||++||
T Consensus 65 ~~~vdDLt~LSyLNEpsVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY 143 (1463)
T COG5022 65 FDGVDDLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAY 143 (1463)
T ss_pred ccCchhhhhhhccCcHHHHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEE
Q 000453 102 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 181 (1491)
Q Consensus 102 ~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 181 (1491)
+.|...++||||||||||||||||+||+||+|||++++.++.....||++||++||||||||||||+|||||||||||++
T Consensus 144 ~~lls~~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyik 223 (1463)
T COG5022 144 RNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIK 223 (1463)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEE
Confidence 99999999999999999999999999999999999998776666789999999999999999999999999999999999
Q ss_pred EEecCCCCccceeeeccccccccccccCCCCCcceeehhcccCCH-hhHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000453 182 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPH-EDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 260 (1491)
Q Consensus 182 l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~~~~-~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f 260 (1491)
|.||.+|.|+||+|+||||||||||+|+.+|||||||||||++++ ..++.+++..|.+|+||++|+|..++|+||+++|
T Consensus 224 I~Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kef 303 (1463)
T COG5022 224 IEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEF 303 (1463)
T ss_pred EEECCCCceechhhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHH
Confidence 999999999999999999999999999999999999999999544 4455666789999999999999999999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEe
Q 000453 261 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 340 (1491)
Q Consensus 261 ~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 340 (1491)
..|+.||.++||+.++|.+||++||||||||||+|..+++ +++...+++ .++.+|.|||||++.|.+||++|.|.+
T Consensus 304 k~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~~---~~~~~c~LLgId~~~f~k~lvk~~ikt 379 (1463)
T COG5022 304 KITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDNS---VLDKACYLLGIDPSLFVKWLVKRQIKT 379 (1463)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeeccc-chhhcCCch---HHHHHHHHhCCCHHHHHHHHHHhHhhc
Confidence 9999999999999999999999999999999999988654 444444433 599999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEeeccCCCCCCCCChHHHHHHHhhHHHH
Q 000453 341 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 420 (1491)
Q Consensus 341 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq 420 (1491)
++|.|.++++..||..+||||||+||++||+|||++||.+|..++...+|||||||||||+|+.||||||||||||||||
T Consensus 380 ~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQ 459 (1463)
T COG5022 380 GGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQ 459 (1463)
T ss_pred CceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999987777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhc-CcccccccchhhhCCCCCchHHHHHHHHHHhc--CCCCcc
Q 000453 421 QHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNRFS 497 (1491)
Q Consensus 421 ~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~~~ 497 (1491)
|+||+|||++||+||.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.|+|++|.+||++.+. .++.|.
T Consensus 460 Q~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~ 539 (1463)
T COG5022 460 QFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFK 539 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCcccc
Confidence 999999999999999999999999999999999999998 24599999999999999999999999999986 467899
Q ss_pred CCCCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCccCCCCCcchhHHHHHHHHHH
Q 000453 498 KPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSL 577 (1491)
Q Consensus 498 ~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L 577 (1491)
+||+....|+|+||||+|+|+++||++||||++++++++|+..|+|+||+.||+...+. .+.++++|+|+.||.||.+|
T Consensus 540 ~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~-~~K~~~pT~gs~~K~sl~~L 618 (1463)
T COG5022 540 KSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENI-ESKGRFPTLGSRFKESLNSL 618 (1463)
T ss_pred ccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhc-cccCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999954333 33468899999999999999
Q ss_pred HHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCccc-----CC
Q 000453 578 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-----GN 652 (1491)
Q Consensus 578 ~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~-----~~ 652 (1491)
|++|++|+||||||||||..|.|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.||++|.|.... +.
T Consensus 619 m~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~ 698 (1463)
T COG5022 619 MSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWK 698 (1463)
T ss_pred HHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997432 22
Q ss_pred CchHHHHHHHHHHcCCC--CeeeccceeecccchhhHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHH
Q 000453 653 YDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFL 730 (1491)
Q Consensus 653 ~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQa~~ 730 (1491)
.|.+.+|+.||..+.++ .||+|+||||||+|+++.||.+|...+..+++.||+.|||++.|++|.+..+.+..+|...
T Consensus 699 ~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~ 778 (1463)
T COG5022 699 EDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQ 778 (1463)
T ss_pred hHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999998876 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHhhHHHHHhHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 731 RGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQ-TGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAY 809 (1491)
Q Consensus 731 Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQ-s~~Rg~~aRr~~~~~~~~~aAi~IQ~~~R~~~~r 809 (1491)
+|++.|+....--...+++.+|..||....|+.|+.....++.+| ..+|....+.........++++.+|+.||....+
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~ 858 (1463)
T COG5022 779 HGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAK 858 (1463)
T ss_pred cccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999877666666799999999999999999999999999999 6777777776667777889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 810 SYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQE 889 (1491)
Q Consensus 810 ~~y~~~~~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~l~~~~~~le~k~~el~~~L~~e~~~~~~lee~~~~e~~~L~~ 889 (1491)
++|..+.+..+.+|+.+|...|++.+..++.+.+++..+......++.++.++...+.......... +.+....|+.
T Consensus 859 kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~---k~e~~a~lk~ 935 (1463)
T COG5022 859 KRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKK 935 (1463)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHH---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988876655211100000 0011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 890 ALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVII-QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSE 968 (1491)
Q Consensus 890 ~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~e~~~l~-~~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele 968 (1491)
-+.. . .+++.+... ....++.+|.....+|++........+...+..+.+..
T Consensus 936 ~l~~-------------------------~--d~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~ 988 (1463)
T COG5022 936 LLNN-------------------------I--DLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGN 988 (1463)
T ss_pred Hhhc-------------------------c--cccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcc
Confidence 1111 0 000000000 01113344444445555444444333333333222222
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCchhHhhhhCccccccccCCCCCCCC
Q 000453 969 AKNGEL---TKKLKDAEKRVDELQDSVQRLAEK---VSNLESENQVLRQQALAISPTAKALAARPKTTIIQRTPVNGNIL 1042 (1491)
Q Consensus 969 ~~~~~l---~~el~~le~~~~~L~eel~~Leek---i~~Le~E~~~Lkq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1491)
...+++ .+++.+...+...+++....+++. +..|....+....... .++...+ ..+....+
T Consensus 989 ~~~~el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s~~~-----------~~~~~~~--~~~~~~~~ 1055 (1463)
T COG5022 989 KANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSEST-----------ELSILKP--LQKLKGLL 1055 (1463)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccchh-----------hhhccCc--ccchhhhh
Confidence 222211 111222111111122222222221 2222222222211000 0000000 00000000
Q ss_pred CCccccccCcccccCCCCCCCCCccccccchhhhhccHHHHHHhhh-ccCCCCCC-ccchhHHHH-HHHhcccc-cccch
Q 000453 1043 NGEMKKVHDSVLTVPGVRDVEPEHRPQKTLNEKQQENQDLLIKCIS-QDLGFSGG-KPVAACLIY-KCLLHWRS-FEVER 1118 (1491)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~l~-~~~~~~~~-kp~pA~il~-~cl~~~~~-~~~e~ 1118 (1491)
..+...........+..+ +....-.....+.+....+.+.+. +++.+.+- -+.||..+. ....+|+. ...+.
T Consensus 1056 ~~~~~~l~~~~~~l~~~r----~~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~ 1131 (1463)
T COG5022 1056 LLENNQLQARYKALKLRR----ENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEI 1131 (1463)
T ss_pred hHHHHHhhhhHhhhhhcC----cccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhh
Confidence 000000000000000000 000000000111222223333332 33323221 122554443 34446775 44455
Q ss_pred HHHHHHHHHHHHhhhhcc---CCcccchhhHHHHHHHHHHHHHhhhhcCCCCCCcccccCCccchhhcccccccCCCCCC
Q 000453 1119 TSIFDRIIQTISGAIEVH---DNNDRLSYWLSNASTLLLLLQRTLKASGAASLTPQRRRSTSSSLLGRMSQGLRASPQSA 1195 (1491)
Q Consensus 1119 ~~ll~~ii~~I~~~v~~~---~d~~~l~fWLSN~~~LL~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1195 (1491)
..++...+..++.+...- +-.-...||.+|...+++.-.-. ...+.+.. ..+++
T Consensus 1132 ~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~-------------- 1188 (1463)
T COG5022 1132 SKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFA-------ALSEKRLY--QSALY-------------- 1188 (1463)
T ss_pred hhHHHHHHhhccchhccccchhccccccccccccccCCCCCchh-------hcchhhhh--Hhhhh--------------
Confidence 666666666666655432 22345789999999887411000 00000000 00000
Q ss_pred CcccccccccccchhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc--CCCCCccccccCCCcchh
Q 000453 1196 GIPFLNSRILSGLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQ--APRTSRASLIKGRSQANA 1273 (1491)
Q Consensus 1196 ~~~~~~~~l~~~~~~~~~v~~~~~~~~fkqqL~~~~~~iy~~l~~~l~~~L~~~L~~~i~--~~~~~~~~~~~~~~~~~~ 1273 (1491)
+.+. .+..+++. ..+..+..+..++|..|.... ++.+++...+- ......+++. .++.
T Consensus 1189 d~~~-----~~s~s~v~---------~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~----~~~~ 1248 (1463)
T COG5022 1189 DEKS-----KLSSSEVN---------DLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFN----NLNK 1248 (1463)
T ss_pred cccc-----cccHHHHH---------HHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccccc----chhh
Confidence 0000 00011222 225677788888888887654 23333321110 0001111110 0122
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCcchhhHHHhchHHHHHHHh
Q 000453 1274 VAQQALIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCH 1353 (1491)
Q Consensus 1274 ~~~~~~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~ 1353 (1491)
.+..+...+.+.++.+++.+.+++..+.+.+.+..-.++++.-++|+.+||.|..|..-..|+.|.++.+|.+.+++||+
T Consensus 1249 ~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~ 1328 (1463)
T COG5022 1249 KFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCR 1328 (1463)
T ss_pred cccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHH
Confidence 23334556778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccchHHHhHHHHHHHHHHhhcCCCccCHHHHHhccCCCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHhhhh
Q 000453 1354 DSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVMMM 1433 (1491)
Q Consensus 1354 ~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Ql~kiL~~Y~~d~~e~~~vs~~~i~~v~~~~~ 1433 (1491)
.++ ...+..+|+++.||+..+++.+++..+++++ .+.|.+|+|.|+.+|+.+|.|.+++ .++|.++.++|.+...
T Consensus 1329 ~~~---i~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~ 1403 (1463)
T COG5022 1329 EFE---ISDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLI 1403 (1463)
T ss_pred hhc---ccchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhh
Confidence 998 3445589999999999999997777777777 6999999999999999999999998 5999999977765554
Q ss_pred c
Q 000453 1434 D 1434 (1491)
Q Consensus 1434 ~ 1434 (1491)
.
T Consensus 1404 ~ 1404 (1463)
T COG5022 1404 K 1404 (1463)
T ss_pred H
Confidence 3
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.9e-196 Score=1846.39 Aligned_cols=729 Identities=35% Similarity=0.558 Sum_probs=678.1
Q ss_pred EEEeccCccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcC
Q 000453 5 QVVTSVSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84 (1491)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~ 84 (1491)
+++|+.++++|.++..++.+++||+.|++||||+|||+|+.||.++.||||+|++|||||||+.+| +|++++++.|++.
T Consensus 78 ~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~ 156 (821)
T PTZ00014 78 TFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDA 156 (821)
T ss_pred EEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCC
Confidence 467889999999998778899999999999999999999999999999999999999999999997 9999999999985
Q ss_pred -CcCCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhc
Q 000453 85 -AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFG 163 (1491)
Q Consensus 85 -~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFG 163 (1491)
..+++||||||||+.||+.|..+++||||||||||||||||+||++|+|||.+++.. ...+|+++|+++||||||||
T Consensus 157 ~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFG 234 (821)
T PTZ00014 157 KDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFG 234 (821)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999999999999986532 23579999999999999999
Q ss_pred cccccCCCCCCcccceEEEEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCcc
Q 000453 164 NAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHY 242 (1491)
Q Consensus 164 NAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~y 242 (1491)
||||+|||||||||||++|+||.+|.|+||+|.||||||||||+|++||||||||||||+ ++++++++|+|.++.+|+|
T Consensus 235 NAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~y 314 (821)
T PTZ00014 235 NAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKY 314 (821)
T ss_pred ccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999 7889999999999999999
Q ss_pred ccCCCccccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCc---ccccccccccchHHHHHHH
Q 000453 243 LNQSNCYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTA 319 (1491)
Q Consensus 243 l~~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a 319 (1491)
|++ +|..++++||+++|.+|+.||++|||+++++.+||+|||||||||||+|.+... .|++.+.+. +...++.||
T Consensus 315 L~~-~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a 392 (821)
T PTZ00014 315 INP-KCLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEAC 392 (821)
T ss_pred cCC-CCccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHH
Confidence 995 588999999999999999999999999999999999999999999999986432 345555443 345799999
Q ss_pred HHcCCCHHHHHHHHhheeEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEeeccCC
Q 000453 320 ELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGF 399 (1491)
Q Consensus 320 ~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GF 399 (1491)
.|||||+++|.++||++++.++++.+++++++++|..+||||||+||++||+|||.+||.+|.++.....+|||||||||
T Consensus 393 ~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GF 472 (821)
T PTZ00014 393 ELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGF 472 (821)
T ss_pred HHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999887777889999999999
Q ss_pred CCCCCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCch
Q 000453 400 ESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTH 479 (1491)
Q Consensus 400 E~f~~NsfeQlcINyaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d 479 (1491)
|+|+.|||||||||||||||||+|++|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||
T Consensus 473 E~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD 552 (821)
T PTZ00014 473 EVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTD 552 (821)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccCCCC-CCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCcc
Q 000453 480 ETFSQKLCQTFAKNNRFSKPKL-SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESS 558 (1491)
Q Consensus 480 ~~~~~kl~~~~~~~~~~~~p~~-~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~ 558 (1491)
++|++||++++++|++|.+|+. ....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......+
T Consensus 553 ~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~ 632 (821)
T PTZ00014 553 EKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKG 632 (821)
T ss_pred HHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccc
Confidence 9999999999999999999886 467999999999999999999999999999999999999999999999986543333
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHH
Q 000453 559 KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFV 638 (1491)
Q Consensus 559 ~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 638 (1491)
+..+.+||+++|+.||+.||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|+
T Consensus 633 ~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~ 712 (821)
T PTZ00014 633 KLAKGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFL 712 (821)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHH
Confidence 34466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCccc-CCCchHHHHHHHHHHcCC--CCeeeccceeecccchhhHHhHHHHhhhh---HHHHHHHHHHhhHHH
Q 000453 639 NRFGILAPEVLE-GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARKIQRQTRTYIA 712 (1491)
Q Consensus 639 ~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~~~l~---~aa~~IQ~~~R~~~~ 712 (1491)
.||++|.+.... ...|++++|+.||..+++ ++|++|+||||||+++++.||.+|.+++. .+++.||++||+|++
T Consensus 713 ~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~ 792 (821)
T PTZ00014 713 SQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKK 792 (821)
T ss_pred HHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887543 235899999999999876 48999999999999999999998888764 577788888888888
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHH
Q 000453 713 RKEFILLRNAAVILQSFLRGEMARKL 738 (1491)
Q Consensus 713 Rk~~~~~r~aai~IQa~~Rg~laRk~ 738 (1491)
|++|.+++.+++.||+.||||++++.
T Consensus 793 r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 793 KRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888877777777777777777653
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=8.8e-187 Score=1743.25 Aligned_cols=674 Identities=87% Similarity=1.326 Sum_probs=648.2
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHH
Q 000453 23 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYR 102 (1491)
Q Consensus 23 ~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~ 102 (1491)
+|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+|+||++++|+.|+++..+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEEE
Q 000453 103 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 182 (1491)
Q Consensus 103 ~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l 182 (1491)
+|.++++||||||||||||||||++|++|+||+.+++..+....+|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555567899999999999999999999999999999999999
Q ss_pred EecCCCCccceeeeccccccccccccCCCCCcceeehhcccCCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000453 183 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 262 (1491)
Q Consensus 183 ~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 262 (1491)
+||.+|.|+||+|.+|||||||||+|++||||||||||||+++++++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEeCC
Q 000453 263 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 342 (1491)
Q Consensus 263 ~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 342 (1491)
++.||+.|||+++++.+||+|||||||||||+|.+..+.|++.+.+..+...++.||.||||++++|.++|+++++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666665555689999999999999999999999999999
Q ss_pred ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEeeccCCCCCCCCChHHHHHHHhhHHHHHH
Q 000453 343 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQH 422 (1491)
Q Consensus 343 e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~~ 422 (1491)
+.+++++++++|..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||+|||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998877789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCCCCccCCCCC
Q 000453 423 FNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS 502 (1491)
Q Consensus 423 f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~~ 502 (1491)
|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCccCCCCCcchhHHHHHHHHHHHHHHh
Q 000453 503 RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 582 (1491)
Q Consensus 503 ~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~ 582 (1491)
+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+..+.+.++++||+++|+.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987665545556788999999999999999999
Q ss_pred ccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCcccCCCchHHHHHHH
Q 000453 583 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMI 662 (1491)
Q Consensus 583 ~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~i 662 (1491)
+|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|.......++++.|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766566889999999
Q ss_pred HHHcCCCCeeeccceeecccchhhHHhHHHHhhh
Q 000453 663 LDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVL 696 (1491)
Q Consensus 663 l~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l 696 (1491)
|..++.++|++|+||||||+|+++.||.+|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998753
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-183 Score=1683.60 Aligned_cols=756 Identities=63% Similarity=0.996 Sum_probs=724.4
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhH
Q 000453 17 DTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAV 96 (1491)
Q Consensus 17 ~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifai 96 (1491)
|++.|+.|+||||.|+|||||+||+||+.||..+.||||+|++|||||||+++|++|++++|..|+ ...+++.||+|||
T Consensus 2 ~~~~~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~fav 80 (862)
T KOG0160|consen 2 DPNPPPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAV 80 (862)
T ss_pred CCCCCCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhH
Confidence 444455799999999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcc
Q 000453 97 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRF 176 (1491)
Q Consensus 97 A~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRf 176 (1491)
|+.||+.|..++.||+||||||||||||+++|++|+||++++++ ..+++||++|+++||||||||||||++|||||||
T Consensus 81 A~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrF 158 (862)
T KOG0160|consen 81 AEEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRF 158 (862)
T ss_pred HHHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHh
Confidence 99999999999999999999999999999999999999999876 4457899999999999999999999999999999
Q ss_pred cceEEEEecCCCCccceeeeccccccccccccCCCCCcceeehhcccCCHhhHhhcCCCCCCCCccccCCCccccCCCCc
Q 000453 177 GKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSD 256 (1491)
Q Consensus 177 gk~~~l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d 256 (1491)
|||++|+||..|+|+||.|+|||||||||+.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||
T Consensus 159 gK~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d 238 (862)
T KOG0160|consen 159 GKVIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSD 238 (862)
T ss_pred hhHHHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhccccc
Confidence 99999999999999999999999999999999999999999999999544999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhhe
Q 000453 257 AHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKR 336 (1491)
Q Consensus 257 ~~~f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~ 336 (1491)
+.+|..++.||..+||+.++|+.||++||||||||||+|..+.+.+++...++ ++..+|.|||++.+.|..||+.|
T Consensus 239 ~~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r 314 (862)
T KOG0160|consen 239 AEEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKR 314 (862)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988766555555443 78999999999999999999999
Q ss_pred eEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCC-CCCCCeEEEEeeccCCCCCCCCChHHHHHHHh
Q 000453 337 VMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQ-DPDSKSIIGVLDIYGFESFKCNSFEQFCINFT 415 (1491)
Q Consensus 337 ~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfeQlcINya 415 (1491)
.+.++++.|+++++..+|...||++||.||++||+|+|+.||.+|+. ++....+||||||||||+|+.|||||||||||
T Consensus 315 ~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINya 394 (862)
T KOG0160|consen 315 KILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYA 394 (862)
T ss_pred HhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhH
Confidence 99999999999999999999999999999999999999999999997 45568999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCCCC
Q 000453 416 NEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNR 495 (1491)
Q Consensus 416 NEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~ 495 (1491)
||||||+||+|||+.||++|.+|||+|+.|+|.||++|+++|++ |.||++||||+|++|.++|++|..||+..+.+|+.
T Consensus 395 nEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~ 473 (862)
T KOG0160|consen 395 NEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKR 473 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999998 78999999999999999999999999999999999
Q ss_pred ccCCCCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCccCCCCCcchhHHHHHHHH
Q 000453 496 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQ 575 (1491)
Q Consensus 496 ~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~ 575 (1491)
|.+|+.+++.|+|.||||+|+|+++||++||||.|++++.+++..|+++|+..+|++...+..+.++++||+++|+.+|.
T Consensus 474 f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~ 553 (862)
T KOG0160|consen 474 FTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLI 553 (862)
T ss_pred cCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999766666556688999999999999
Q ss_pred HHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCcccCCCch
Q 000453 576 SLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDD 655 (1491)
Q Consensus 576 ~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~ 655 (1491)
.||.+|++|+||||||||||+.+.|+.|+..+|++|||||||||+|||+++|||.|++|.||+.||++|+| ... ..|+
T Consensus 554 ~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~ 631 (862)
T KOG0160|consen 554 SLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDD 631 (862)
T ss_pred HHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 333 3466
Q ss_pred HHHHHHHHHHcCCCCeeeccceeecccchhhHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 000453 656 QVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMA 735 (1491)
Q Consensus 656 ~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQa~~Rg~la 735 (1491)
+..|+.+|+..+.+.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|..+|++++.||+.+||+++
T Consensus 632 ~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~ 711 (862)
T KOG0160|consen 632 LSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLA 711 (862)
T ss_pred hHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHHH
Q 000453 736 RKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARN 785 (1491)
Q Consensus 736 Rk~~~~~r~~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr 785 (1491)
|+ ..+ +..||+.||+.||+|..|++|...+.+++.+|+.+||+.+|+
T Consensus 712 r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 712 RR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99 334 678999999999999999999999999999999999998887
No 5
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=3e-182 Score=1568.72 Aligned_cols=729 Identities=40% Similarity=0.689 Sum_probs=678.1
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHH
Q 000453 21 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 100 (1491)
Q Consensus 21 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 100 (1491)
...|++|++-|+.++|++++.||+.||..+.||||+|+|||+||||+.++ ||+++.|+.|+|..+.+.|||+||||+.|
T Consensus 6 ~~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~a 84 (1001)
T KOG0164|consen 6 DEVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAA 84 (1001)
T ss_pred cccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHH
Confidence 35799999999999999999999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCC-CcccHHHHHHhcCchhhhhccccccCCCCCCcccce
Q 000453 101 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKF 179 (1491)
Q Consensus 101 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~-~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~ 179 (1491)
|+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +...|.+.+|.|||||||||||||.|||||||||||
T Consensus 85 Yrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKY 164 (1001)
T KOG0164|consen 85 YRSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKY 164 (1001)
T ss_pred HHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcc
Confidence 9999999999999999999999999999999999999865443 235677899999999999999999999999999999
Q ss_pred EEEEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCC-CCCCCccccCCCccccCCCCcH
Q 000453 180 VEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLG-SPKSFHYLNQSNCYELDGVSDA 257 (1491)
Q Consensus 180 ~~l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~-~~~~~~yl~~~~~~~~~~~~d~ 257 (1491)
+.|.||-+|..+|+.|.+|||||||||.|.+|||||||||||+. +++.++..|+|. ++..|+||++| +..+.+++|+
T Consensus 165 MDInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~ 243 (1001)
T KOG0164|consen 165 MDINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDA 243 (1001)
T ss_pred eeeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccH
Confidence 99999999999999999999999999999999999999999999 788889999994 89999999998 7889999999
Q ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhhee
Q 000453 258 HEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 337 (1491)
Q Consensus 258 ~~f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 337 (1491)
.+|..++.||.++||+++|+.++|+|+|||||||||+|.++. |++.+.+. ..+..+|+||++.+++|+++||+|+
T Consensus 244 ~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rt 318 (1001)
T KOG0164|consen 244 SDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRT 318 (1001)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998754 45555443 4799999999999999999999999
Q ss_pred EEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCC-----CCCCeEEEEeeccCCCCCCCCChHHHHH
Q 000453 338 MVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-----PDSKSIIGVLDIYGFESFKCNSFEQFCI 412 (1491)
Q Consensus 338 ~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-----~~~~~~IgiLDi~GFE~f~~NsfeQlcI 412 (1491)
+.+++|.+.+++++.||.++||||||++|+|||+|||.+||++|... ......||+|||||||+|+.||||||||
T Consensus 319 vaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcI 398 (1001)
T KOG0164|consen 319 VAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCI 398 (1001)
T ss_pred HHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999642 1235899999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCC-CchHHHHHHHHHHhc
Q 000453 413 NFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFSQKLCQTFA 491 (1491)
Q Consensus 413 NyaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~-~~d~~~~~kl~~~~~ 491 (1491)
||+||||||.|++-+++.|||||.+|||+|..|+|.+|.-++||+|.+..|||++|||||+.|+ -||.+|+++|.+.++
T Consensus 399 NYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~ 478 (1001)
T KOG0164|consen 399 NYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLK 478 (1001)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999987 699999999999999
Q ss_pred CCCCccCCC-------CCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCccC-CCCC
Q 000453 492 KNNRFSKPK-------LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSK-SSKF 563 (1491)
Q Consensus 492 ~~~~~~~p~-------~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~-~~~~ 563 (1491)
+|++|...+ ++..+|.|.||||+|+|++.||++||+|.+..|+-.+|.+|+++++++|||.+..+... ..+.
T Consensus 479 ~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP 558 (1001)
T KOG0164|consen 479 KHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRP 558 (1001)
T ss_pred hCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCC
Confidence 999996432 23468999999999999999999999999999999999999999999999976433222 2366
Q ss_pred cchhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcc
Q 000453 564 SSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGI 643 (1491)
Q Consensus 564 ~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 643 (1491)
+|+|++|+.|+..||+.|.+-+|+||||||||+.|.|+.||...|.+|.+|+|+||.+|++|+||.+|.+|+.|+.||++
T Consensus 559 ~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKm 638 (1001)
T KOG0164|consen 559 PTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKM 638 (1001)
T ss_pred CcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccC--CCchHHHHHHHHHHcCC-CCeeeccceeecccch-hhHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHhhh
Q 000453 644 LAPEVLEG--NYDDQVACQMILDKKGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARKIQRQTRTYIARKEFILL 719 (1491)
Q Consensus 644 l~~~~~~~--~~~~~~~~~~il~~~~~-~~~~iGkTkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~ 719 (1491)
+++..++. ..++++.|..|++..|. +++.+|+||||+|.+. +-.||..|.+++...++.||+.||||++|.+|++|
T Consensus 639 i~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rm 718 (1001)
T KOG0164|consen 639 ICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRM 718 (1001)
T ss_pred hCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99886532 34679999999999987 5899999999999875 57899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHhhHH
Q 000453 720 RNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLT 766 (1491)
Q Consensus 720 r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~~~Rr~y~~ 766 (1491)
+++++.|+ |||.+.. | .++..||+.+||+..++.|.+
T Consensus 719 ka~~~ii~-wyR~~K~-------k--s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 719 KASATIIR-WYRRYKL-------K--SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHH-HHHHHHH-------H--HHHHHHHHHHHhhhhccccCC
Confidence 99999999 8884332 2 567789999999999999875
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.7e-182 Score=1713.14 Aligned_cols=664 Identities=51% Similarity=0.857 Sum_probs=625.9
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000453 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 103 (1491)
Q Consensus 24 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 103 (1491)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++|||||+||++||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCC--CCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEE
Q 000453 104 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 181 (1491)
Q Consensus 104 m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~--~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 181 (1491)
|.++++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||++||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 224679999999999999999999999999999999999
Q ss_pred EEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000453 182 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 260 (1491)
Q Consensus 182 l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f 260 (1491)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEe
Q 000453 261 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 340 (1491)
Q Consensus 261 ~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 340 (1491)
..|+.||+.|||+++++.+||+|||||||||||+|.+..+ +.+.+.. +...++.||+||||++++|.++|+++++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987543 3322221 224699999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCC---CCCCeEEEEeeccCCCCCCCCChHHHHHHHhhH
Q 000453 341 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD---PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 417 (1491)
Q Consensus 341 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE 417 (1491)
++|.+++++++++|.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhc--CCCC
Q 000453 418 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNR 495 (1491)
Q Consensus 418 kLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~ 495 (1491)
+||++|++|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||+++++ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999975 699999999999999999999999999998 8999
Q ss_pred ccCCCCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCc-----------------c
Q 000453 496 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-----------------S 558 (1491)
Q Consensus 496 ~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------------~ 558 (1491)
|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+ .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532110 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHH
Q 000453 559 KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFV 638 (1491)
Q Consensus 559 ~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 638 (1491)
+..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||.+.|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 11256899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCcccCCCchHHHHHHHHHHcCC--CCeeeccceeecccchhhHHhHHH
Q 000453 639 NRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 692 (1491)
Q Consensus 639 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 692 (1491)
.||++|+|.......|+++.|+.||+.+.. ++|++|+||||||+++++.||.+|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998664456899999999999875 589999999999999999999876
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=6.9e-182 Score=1701.45 Aligned_cols=661 Identities=46% Similarity=0.766 Sum_probs=625.2
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000453 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 103 (1491)
Q Consensus 24 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 103 (1491)
|+|||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+| +|++++++.|+++..+++|||||+||++||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEEEE
Q 000453 104 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 183 (1491)
Q Consensus 104 m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 183 (1491)
|.++++||||||||||||||||++|++|+||+.+++.. ..++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997542 46999999999999999999999999999999999999
Q ss_pred ecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000453 184 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 262 (1491)
Q Consensus 184 f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 262 (1491)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|..
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCc--ccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEe
Q 000453 263 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 340 (1491)
Q Consensus 263 ~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 340 (1491)
++.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+. ..++.||.||||++++|.++||++++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDT---PNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCCh---HHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999986432 244555543 4799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCCeEEEEeeccCCCCCCCCChHHHHHHHhhHHH
Q 000453 341 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 419 (1491)
Q Consensus 341 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkL 419 (1491)
+++.+++++++++|..+||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCCCCccCC
Q 000453 420 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 499 (1491)
Q Consensus 420 q~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 499 (1491)
|++|++|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|++|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCc-cCCCCCcchhHHHHHHHHHH
Q 000453 500 KL-SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 577 (1491)
Q Consensus 500 ~~-~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~f~~~l~~L 577 (1491)
+. .+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+...... ....+.+||+++|+.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 46799999999999999999999999999999999999999999999998754221 22336689999999999999
Q ss_pred HHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCcccC--CCch
Q 000453 578 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG--NYDD 655 (1491)
Q Consensus 578 ~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~--~~~~ 655 (1491)
|++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..... ..+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3477
Q ss_pred HHHHHHHHHHcCC--CCeeeccceeecccchhhHHhHHH
Q 000453 656 QVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 692 (1491)
Q Consensus 656 ~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 692 (1491)
++.|+.|++.+.+ ++|++|+||||||++++..||..|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8899999998765 589999999999999999999875
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.9e-181 Score=1705.88 Aligned_cols=666 Identities=45% Similarity=0.760 Sum_probs=625.5
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHH
Q 000453 22 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 101 (1491)
Q Consensus 22 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 101 (1491)
..++|||+.|++|||++||++|+.||..+.||||+|+||||||||+++| +|++++++.|+++..+++|||||+||++||
T Consensus 4 ~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay 82 (693)
T cd01377 4 FDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNAY 82 (693)
T ss_pred ccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCC------CcccHHHHHHhcCchhhhhccccccCCCCCCc
Q 000453 102 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV------EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSR 175 (1491)
Q Consensus 102 ~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~------~~~~i~~~il~snpilEaFGNAkT~~N~NSSR 175 (1491)
+.|..+++||||||||||||||||++|+||+||+.+++.... ....|+++|+++||||||||||||++||||||
T Consensus 83 ~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSR 162 (693)
T cd01377 83 RSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSR 162 (693)
T ss_pred HHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccc
Confidence 999999999999999999999999999999999999865321 23579999999999999999999999999999
Q ss_pred ccceEEEEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCC-CCCccccCCCccccCC
Q 000453 176 FGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSP-KSFHYLNQSNCYELDG 253 (1491)
Q Consensus 176 fgk~~~l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~-~~~~yl~~~~~~~~~~ 253 (1491)
||||++|+||.+|.|+||+|.||||||||||.|+.||||||||||||+ ++++++++|+|.++ .+|+||++++| .+++
T Consensus 163 FGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~~ 241 (693)
T cd01377 163 FGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIPG 241 (693)
T ss_pred cceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCCC
Confidence 999999999999999999999999999999999999999999999999 78899999999876 89999999876 4789
Q ss_pred CCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHH
Q 000453 254 VSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDAL 333 (1491)
Q Consensus 254 ~~d~~~f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l 333 (1491)
+||+++|.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. ..+..||.||||++++|.++|
T Consensus 242 ~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l 318 (693)
T cd01377 242 VDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKAL 318 (693)
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999987544455555543 479999999999999999999
Q ss_pred hheeEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEeeccCCCCCCCCChHHHHHH
Q 000453 334 IKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCIN 413 (1491)
Q Consensus 334 ~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcIN 413 (1491)
|++++.++++.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||
T Consensus 319 ~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 319 LHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred cceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877889999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcCccccccccc-ChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcC
Q 000453 414 FTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFI-DNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAK 492 (1491)
Q Consensus 414 yaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~-dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~ 492 (1491)
||||+||++|++|||+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||++|+|||++|++||++.+++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999994 99999999999999999999999999999999999999999999
Q ss_pred CCCc--cCCCCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCc----------cCC
Q 000453 493 NNRF--SKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES----------SKS 560 (1491)
Q Consensus 493 ~~~~--~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----------~~~ 560 (1491)
+++| .+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .+.
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~ 558 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKKG 558 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCcC
Confidence 8887 4455567899999999999999999999999999999999999999999999997542211 112
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHh
Q 000453 561 SKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNR 640 (1491)
Q Consensus 561 ~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~r 640 (1491)
+++.||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||||||+++|||+|++|.+|++|
T Consensus 559 ~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~r 638 (693)
T cd01377 559 GSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQR 638 (693)
T ss_pred CccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHH
Confidence 24589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcc-cCCCchHHHHHHHHHHcCCC--CeeeccceeecccchhhHHhHHH
Q 000453 641 FGILAPEVL-EGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARR 692 (1491)
Q Consensus 641 y~~l~~~~~-~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 692 (1491)
|++|+|... ....|.++.|+.||+.++++ +|++|+||||||++++..||.+|
T Consensus 639 Y~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 639 YEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 999998863 33468899999999998874 89999999999999999999876
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.3e-180 Score=1691.51 Aligned_cols=662 Identities=45% Similarity=0.768 Sum_probs=626.5
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000453 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 103 (1491)
Q Consensus 24 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 103 (1491)
|+|||+.|++|||++||++|+.||.++.||||+|++|||||||+++| +|++++++.|+++..+++|||||+||++||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEEEE
Q 000453 104 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 183 (1491)
Q Consensus 104 m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 183 (1491)
|..+++||||||||||||||||++|++|+||+.++++.. ....++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986532 2356999999999999999999999999999999999999
Q ss_pred ecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000453 184 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 262 (1491)
Q Consensus 184 f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 262 (1491)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEeCC
Q 000453 263 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 342 (1491)
Q Consensus 263 ~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 342 (1491)
++.||+.|||+++++.+||+|||||||||||+|....+ +.+.+.+ ...++.||.||||++++|.++|+++++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 3334444 3479999999999999999999999999998
Q ss_pred ----ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCCeEEEEeeccCCCCCCCCChHHHHHHHhhH
Q 000453 343 ----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 417 (1491)
Q Consensus 343 ----e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE 417 (1491)
|.+++++++++|..+||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhc-CcccccccchhhhCCC-CCchHHHHHHHHHHhcCCCC
Q 000453 418 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFSQKLCQTFAKNNR 495 (1491)
Q Consensus 418 kLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~p-~~~d~~~~~kl~~~~~~~~~ 495 (1491)
|||++||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++++++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred ccCCCCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCccCCCCCcchhHHHHHHHH
Q 000453 496 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQ 575 (1491)
Q Consensus 496 ~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~ 575 (1491)
+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+......+ ..+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 888888889999999999999999999999999999999999999999999999986433222 2356899999999999
Q ss_pred HHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCcc-cCCCc
Q 000453 576 SLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYD 654 (1491)
Q Consensus 576 ~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~-~~~~~ 654 (1491)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++|+|... ....|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 23468
Q ss_pred hHHHHHHHHHHcCC--CCeeeccceeecccc-hhhHHhHHH
Q 000453 655 DQVACQMILDKKGL--KGYQIGKTKVFLRAG-QMAELDARR 692 (1491)
Q Consensus 655 ~~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r 692 (1491)
++++|+.||..+++ ++|++|+||||||+| +++.||..|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 99999999999876 489999999999998 689999876
No 10
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=4e-180 Score=1683.72 Aligned_cols=656 Identities=48% Similarity=0.808 Sum_probs=614.1
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHH
Q 000453 22 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 101 (1491)
Q Consensus 22 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 101 (1491)
..|+|||+.|++|||++||++|+.||.++.||||+|+||||||||+.+| +|++++++.|+++. .+|||||+||++||
T Consensus 7 ~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~Ay 83 (677)
T cd01383 7 LDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTAY 83 (677)
T ss_pred ccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999997 99999999998764 47999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEE
Q 000453 102 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 181 (1491)
Q Consensus 102 ~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 181 (1491)
+.|..+++||||||||||||||||++|++|+||+.++++ ..++++|+++||||||||||||++||||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~ 158 (677)
T cd01383 84 NEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIE 158 (677)
T ss_pred HHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEE
Confidence 999999999999999999999999999999999999753 368999999999999999999999999999999999
Q ss_pred EEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000453 182 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 260 (1491)
Q Consensus 182 l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f 260 (1491)
|+||.+|.|+||+|.||||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+.+|
T Consensus 159 l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f 238 (677)
T cd01383 159 IHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRF 238 (677)
T ss_pred EEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEe
Q 000453 261 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 340 (1491)
Q Consensus 261 ~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 340 (1491)
..|+.||+.|||+++++..||+|||||||||||+|.+.++.+.+.+.+ ...+..||.||||++++|.++||++++.+
T Consensus 239 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 315 (677)
T cd01383 239 HTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMHV 315 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEEe
Confidence 999999999999999999999999999999999998644333333332 24699999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCC-CCeEEEEeeccCCCCCCCCChHHHHHHHhhHHH
Q 000453 341 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-SKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 419 (1491)
Q Consensus 341 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkL 419 (1491)
+++.+++++++++|..+||||||+||++||+|||.+||.+|.+... ...+||||||||||+|+.|||||||||||||||
T Consensus 316 ~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkL 395 (677)
T cd01383 316 NNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERL 395 (677)
T ss_pred CCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987543 467999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCCCCccCC
Q 000453 420 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 499 (1491)
Q Consensus 420 q~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 499 (1491)
|++|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|+.|.++
T Consensus 396 Q~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 475 (677)
T cd01383 396 QQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGE 475 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCC-----Cc-C-----ccCCCCCcchhH
Q 000453 500 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPL-----PE-E-----SSKSSKFSSIGS 568 (1491)
Q Consensus 500 ~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~-----~~-~-----~~~~~~~~tv~~ 568 (1491)
+ +..|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. . ..+.++..||++
T Consensus 476 ~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~ 552 (677)
T cd01383 476 R--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVGT 552 (677)
T ss_pred C--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchHH
Confidence 5 568999999999999999999999999999999999999999876 55321 00 0 111235689999
Q ss_pred HHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCc
Q 000453 569 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 648 (1491)
Q Consensus 569 ~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 648 (1491)
+|+.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+|++|.+|++||++|+|..
T Consensus 553 ~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~ 632 (677)
T cd01383 553 KFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLEN 632 (677)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccCCCchHHHHHHHHHHcCC--CCeeeccceeecccchhhHHhHHH
Q 000453 649 LEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 692 (1491)
Q Consensus 649 ~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 692 (1491)
.. ..|++..|+.||+.+++ ++|++|+||||||+|+++.||..|
T Consensus 633 ~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 633 IA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 44 35788999999999876 489999999999999999999876
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=2.6e-179 Score=1679.47 Aligned_cols=660 Identities=42% Similarity=0.716 Sum_probs=617.2
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000453 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 103 (1491)
Q Consensus 24 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 103 (1491)
|+|||+.|++|||++||++|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++|||||+||++||+.
T Consensus 2 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 2 GVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEEEE
Q 000453 104 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 183 (1491)
Q Consensus 104 m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 183 (1491)
|..+++||||||||||||||||++|++|+||+.+++.. ...++++|+++||||||||||||++||||||||||++|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~ 157 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIF 157 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEE
Confidence 99999999999999999999999999999999987532 246899999999999999999999999999999999999
Q ss_pred ecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000453 184 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 262 (1491)
Q Consensus 184 f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 262 (1491)
|+ +|.|+||+|.||||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++.+|+++|..
T Consensus 158 f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (677)
T cd01387 158 LE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRR 236 (677)
T ss_pred ec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHH
Confidence 95 7999999999999999999999999999999999999 788999999999999999999999988999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCc--ccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEe
Q 000453 263 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 340 (1491)
Q Consensus 263 ~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 340 (1491)
|+.||+.|||+++++.+||+|||||||||||+|..... .+.+.+.+ ...++.||+||||++++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 313 (677)
T cd01387 237 LLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTET 313 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEEe
Confidence 99999999999999999999999999999999986432 22333433 24699999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEeeccCCCCCCCCChHHHHHHHhhHHHH
Q 000453 341 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 420 (1491)
Q Consensus 341 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq 420 (1491)
++|.+.+++++++|..+||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ 392 (677)
T cd01387 314 RREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQ 392 (677)
T ss_pred CCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999864 45679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCCCCccCCC
Q 000453 421 QHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPK 500 (1491)
Q Consensus 421 ~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~ 500 (1491)
++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|+|++|++|++.++++|+.|.+|+
T Consensus 393 ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~ 472 (677)
T cd01387 393 YLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPK 472 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcC---------c--cCCCCCcchhHH
Q 000453 501 LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE---------S--SKSSKFSSIGSR 569 (1491)
Q Consensus 501 ~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~---------~--~~~~~~~tv~~~ 569 (1491)
.+...|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..... + .+..+.+||+++
T Consensus 473 ~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~ 552 (677)
T cd01387 473 MPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAK 552 (677)
T ss_pred CCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHH
Confidence 88889999999999999999999999999999999999999999999999653210 0 011245799999
Q ss_pred HHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCcc
Q 000453 570 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 649 (1491)
Q Consensus 570 f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~ 649 (1491)
|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||||||+|+|||+|++|.+|+.||++|+|...
T Consensus 553 f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~ 632 (677)
T cd01387 553 FQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKL 632 (677)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred cCCCchHHHHHHHHHHcCC--CCeeeccceeecccchhhHHhHHH
Q 000453 650 EGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 692 (1491)
Q Consensus 650 ~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 692 (1491)
....+.+..+..++..+++ +.|++|+||||||++++..||..|
T Consensus 633 ~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 633 ARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred cCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 3333334556788888775 479999999999999999999876
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=5.7e-179 Score=1680.01 Aligned_cols=663 Identities=41% Similarity=0.675 Sum_probs=621.2
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCC-cCCCCcchhhHHHHHH
Q 000453 23 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAA-FGELSPHVFAVGDAAY 101 (1491)
Q Consensus 23 ~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~-~~~~~PHifaiA~~Ay 101 (1491)
.++|||+.|++|||++||++|+.||.+++||||+|++|||||||+++| +|++++++.|+++. .+++|||||+||++||
T Consensus 7 ~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 7 REYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred CCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999998 99999999999887 7899999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEE
Q 000453 102 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 181 (1491)
Q Consensus 102 ~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 181 (1491)
+.|.++++||||||||||||||||++|++|+||+.+++.. ..+..++++|+++||||||||||||++||||||||||++
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~-~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~ 164 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKG-YAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQ 164 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCC-ccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEE
Confidence 9999999999999999999999999999999999997532 223579999999999999999999999999999999999
Q ss_pred EEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000453 182 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 260 (1491)
Q Consensus 182 l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f 260 (1491)
|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++++|.++.+|+||++++|...+++||+.+|
T Consensus 165 l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f 244 (692)
T cd01385 165 VNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEF 244 (692)
T ss_pred EEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999988889999999988777899999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCc---ccccccccccchHHHHHHHHHcCCCHHHHHHHHhhee
Q 000453 261 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 337 (1491)
Q Consensus 261 ~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 337 (1491)
..|+.||+.|||++++++.||+|||||||||||+|.+..+ .+++.+.++ ..+..||.||||++++|.++||+++
T Consensus 245 ~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~ 321 (692)
T cd01385 245 ERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNP---EVVDLLSQLLKVKRETLMEALTKKR 321 (692)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCH---HHHHHHHHHhCCCHHHHHHHhccCe
Confidence 9999999999999999999999999999999999986432 344444443 4799999999999999999999999
Q ss_pred EEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCC---CCCeEEEEeeccCCCCCCC-CChHHHHHH
Q 000453 338 MVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDP---DSKSIIGVLDIYGFESFKC-NSFEQFCIN 413 (1491)
Q Consensus 338 ~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~---~~~~~IgiLDi~GFE~f~~-NsfeQlcIN 413 (1491)
+.++||.+++|+++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+|+. |||||||||
T Consensus 322 ~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcIN 401 (692)
T cd01385 322 TVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCIN 401 (692)
T ss_pred EEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhH
Confidence 999999999999999999999999999999999999999999998654 2468999999999999999 999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCC
Q 000453 414 FTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKN 493 (1491)
Q Consensus 414 yaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~ 493 (1491)
|||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|+++.+++|
T Consensus 402 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~ 481 (692)
T cd01385 402 YANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDN 481 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCcc---------CCCCCc
Q 000453 494 NRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESS---------KSSKFS 564 (1491)
Q Consensus 494 ~~~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~~ 564 (1491)
+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+.... ++.+..
T Consensus 482 ~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~ 561 (692)
T cd01385 482 KYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAAP 561 (692)
T ss_pred CCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccCC
Confidence 99999988888999999999999999999999999999999999999999999999975432211 112347
Q ss_pred chhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhccc
Q 000453 565 SIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 644 (1491)
Q Consensus 565 tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l 644 (1491)
||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||++.|||+|++|.+|+.||++|
T Consensus 562 tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L 641 (692)
T cd01385 562 SVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641 (692)
T ss_pred cHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCchHHHHHHHHHHcCCC--CeeeccceeecccchhhHHhHHHH
Q 000453 645 APEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRA 693 (1491)
Q Consensus 645 ~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~ 693 (1491)
+|... .+.++.|+.||+.++++ +|++|+||||||+++++.||....
T Consensus 642 ~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 642 LPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred Ccccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 98743 23467899999998874 899999999999999999987543
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.4e-178 Score=1682.24 Aligned_cols=664 Identities=42% Similarity=0.720 Sum_probs=618.3
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHH
Q 000453 21 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 100 (1491)
Q Consensus 21 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 100 (1491)
++.++|||+.|++|||++||++|+.||.++.||||+|+||||||||+.+|++|+++++..|+++..+++|||||+||++|
T Consensus 2 ~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 81 (717)
T cd01382 2 SKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKA 81 (717)
T ss_pred CCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceE
Q 000453 101 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 180 (1491)
Q Consensus 101 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~ 180 (1491)
|++|.++++||||||||||||||||++|++|+||+.+++++ ..|+++|+++||||||||||||++||||||||||+
T Consensus 82 y~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~ 157 (717)
T cd01382 82 YRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFV 157 (717)
T ss_pred HHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEE
Confidence 99999999999999999999999999999999999986542 57999999999999999999999999999999999
Q ss_pred EEEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCC------------
Q 000453 181 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN------------ 247 (1491)
Q Consensus 181 ~l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~------------ 247 (1491)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 158 ~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~ 237 (717)
T cd01382 158 EIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQ 237 (717)
T ss_pred EEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred --------------ccccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCc-ccccccccccch
Q 000453 248 --------------CYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE-IDSSVIKDEKSR 312 (1491)
Q Consensus 248 --------------~~~~~~~~d~~~f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~~~ 312 (1491)
|...+++||+.+|..|+.||++|||+++++..||+|||||||||||+|.+... .+.+.+.+ .+.
T Consensus 238 ~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~ 316 (717)
T cd01382 238 ILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSE 316 (717)
T ss_pred ccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCH
Confidence 22457899999999999999999999999999999999999999999986432 23333332 234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhheeEE-----eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 000453 313 FHLNMTAELLRCDAQSLEDALIKRVMV-----TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDS 387 (1491)
Q Consensus 313 ~~l~~~a~LLgv~~~~L~~~l~~~~~~-----~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~ 387 (1491)
..+..||.||||++++|.++||+|++. ++++.+.+++++++|..+||+|||+||++||+|||.+||.+|..+. .
T Consensus 317 ~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~ 395 (717)
T cd01382 317 QSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-S 395 (717)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C
Confidence 579999999999999999999999998 6789999999999999999999999999999999999999997653 5
Q ss_pred CeEEEEeeccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCccccccc
Q 000453 388 KSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIAL 467 (1491)
Q Consensus 388 ~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~l 467 (1491)
..+||||||||||+|+.||||||||||||||||++|+++||+.||++|.+|||+|++|+|.||++|||||++||.|||++
T Consensus 396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhCCCCCchHHHHHHHHHHhcCCCCccCCCCC----------CCCeEEEecccceeeeccchhhhcchhhHHHHHHH
Q 000453 468 LDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS----------RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQAL 537 (1491)
Q Consensus 468 Ldee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~l 537 (1491)
|||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++
T Consensus 476 LDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~l 555 (717)
T cd01382 476 LDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESL 555 (717)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHH
Confidence 99999999999999999999999999988777532 35799999999999999999999999999999999
Q ss_pred HHhcchhHHhhcCCCCCcCc---c--CCCCCcchhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhh
Q 000453 538 LTAAKCSFVAGLFPPLPEES---S--KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQL 612 (1491)
Q Consensus 538 l~~S~~~~v~~lf~~~~~~~---~--~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QL 612 (1491)
|++|++++|+.||+...... . +..++.||+++||.||+.||++|++|+||||||||||+.++|+.||...|++||
T Consensus 556 l~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QL 635 (717)
T cd01382 556 ICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQL 635 (717)
T ss_pred HHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHH
Confidence 99999999999998643211 1 122567999999999999999999999999999999999999999999999999
Q ss_pred cccChhHHHHhhhccCCcccchHHHHHhhcccccCcccCCCchHHHHHHHHHHcCCC--CeeeccceeecccchhhHHhH
Q 000453 613 RCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDA 690 (1491)
Q Consensus 613 r~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~ 690 (1491)
||+||||+|||+|+|||+|++|.+|++||+.|+|.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||+
T Consensus 636 r~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 636 QCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999987543 358899999999998874 899999999999999999997
Q ss_pred H
Q 000453 691 R 691 (1491)
Q Consensus 691 ~ 691 (1491)
+
T Consensus 715 ~ 715 (717)
T cd01382 715 I 715 (717)
T ss_pred H
Confidence 5
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=2.1e-176 Score=1644.16 Aligned_cols=639 Identities=39% Similarity=0.698 Sum_probs=601.3
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000453 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 103 (1491)
Q Consensus 24 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 103 (1491)
.+|||+.|++|||++||++|+.||..+.||||+|++|||||||+.+| +|+++++..|+++..+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEEEE
Q 000453 104 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 183 (1491)
Q Consensus 104 m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 183 (1491)
|...++||||||||||||||||++|++|+||+.+++.. ..+|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999986532 357999999999999999999999999999999999999
Q ss_pred ecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhH-hhcCCCCCCCCccccCCCccccCCCC----cH
Q 000453 184 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDI-AKYKLGSPKSFHYLNQSNCYELDGVS----DA 257 (1491)
Q Consensus 184 f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~-~~~~L~~~~~~~yl~~~~~~~~~~~~----d~ 257 (1491)
|+.+|.|+||+|.+|||||||||+|++||||||||||||+ ++++++ +.|+|.++.+|+||+++++..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 454544 78999999999999999887777765 46
Q ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCc---ccccccccccchHHHHHHHHHcCCCHHHHHHHHh
Q 000453 258 HEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALI 334 (1491)
Q Consensus 258 ~~f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 334 (1491)
++|..|+.||.+|||+++++..||+|||||||||||+|.+... .+.+.+.+ ...+..||.||||++++|.++|+
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999976432 22333433 35799999999999999999999
Q ss_pred heeEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCC-----CCeEEEEeeccCCCCCCCCChHH
Q 000453 335 KRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-----SKSIIGVLDIYGFESFKCNSFEQ 409 (1491)
Q Consensus 335 ~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfeQ 409 (1491)
++++.++|+.+++++++++|..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999987543 35799999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHH
Q 000453 410 FCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT 489 (1491)
Q Consensus 410 lcINyaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~ 489 (1491)
|||||||||||++|+++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++.+
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCccCCCCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCccCCCCCcchhHH
Q 000453 490 FAKNNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSR 569 (1491)
Q Consensus 490 ~~~~~~~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 569 (1491)
++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| .||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 4678889888889999999999999999999999999999999999887 479999
Q ss_pred HHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCcc
Q 000453 570 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 649 (1491)
Q Consensus 570 f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~ 649 (1491)
||.||++||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cCCCchHHHHHHHHHHcCCCCeeeccceeecccchhhHHhHHH
Q 000453 650 EGNYDDQVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARR 692 (1491)
Q Consensus 650 ~~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r 692 (1491)
....+.++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999875
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.6e-173 Score=1694.09 Aligned_cols=734 Identities=43% Similarity=0.729 Sum_probs=672.9
Q ss_pred EEeccCccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCC
Q 000453 6 VVTSVSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAA 85 (1491)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~ 85 (1491)
+.|+.+.++|.+|.. .+.++||+.|++||||+|||||+.||.++.||||+|..||+||||+++| ||++++++.|+|+.
T Consensus 66 ~~v~~~~v~~~NPPk-fdk~eDMa~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkr 143 (1930)
T KOG0161|consen 66 TQVKEDDVQKMNPPK-FDKVEDMAELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKK 143 (1930)
T ss_pred EEecHHHcCcCCCCC-ccccccHHHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccc
Confidence 448889999999854 3589999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCC---cccHHHHHHhcCchhhhh
Q 000453 86 FGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAF 162 (1491)
Q Consensus 86 ~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~---~~~i~~~il~snpilEaF 162 (1491)
..++||||||||+.||+.|+.++.||||+|+|||||||||+||.||+|||.+++.+... +.+++++|+++|||||||
T Consensus 144 r~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaF 223 (1930)
T KOG0161|consen 144 REEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAF 223 (1930)
T ss_pred cccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHh
Confidence 99999999999999999999999999999999999999999999999999998754221 257899999999999999
Q ss_pred ccccccCCCCCCcccceEEEEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCC-CCCC
Q 000453 163 GNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGS-PKSF 240 (1491)
Q Consensus 163 GNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~-~~~~ 240 (1491)
|||+|++|+|||||||||.|+||..|.|+||.|.+||||||||++|+++|||||||||+++ +++..+..|.|.+ +.+|
T Consensus 224 GNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y 303 (1930)
T KOG0161|consen 224 GNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDY 303 (1930)
T ss_pred cChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 7788899999975 8999
Q ss_pred ccccCCCccccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHH
Q 000453 241 HYLNQSNCYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAE 320 (1491)
Q Consensus 241 ~yl~~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~ 320 (1491)
.|+.++.. .++|+||+++|..|..||+++||+++++.+||+|+||||||||+.|......+...+.+. ...+.+|.
T Consensus 304 ~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~---~~a~ka~~ 379 (1930)
T KOG0161|consen 304 KFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNT---EVADKACH 379 (1930)
T ss_pred hhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCc---hHHHHHHH
Confidence 99999877 899999999999999999999999999999999999999999999987644455544443 36899999
Q ss_pred HcCCCHHHHHHHHhheeEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEeeccCCC
Q 000453 321 LLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFE 400 (1491)
Q Consensus 321 LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE 400 (1491)
||||+.++|.++++++.+.++++.+.+..+.+|+..+..+|||++|+|||.|+|.+||.+|.......+|||||||+|||
T Consensus 380 llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFE 459 (1930)
T KOG0161|consen 380 LLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFE 459 (1930)
T ss_pred HcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999998877778999999999999
Q ss_pred CCCCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcccccccc-cChHHHHHHhhcCcccccccchhhhCCCCCch
Q 000453 401 SFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTH 479 (1491)
Q Consensus 401 ~f~~NsfeQlcINyaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d 479 (1491)
+|+.||||||||||+||||||+||+|+|..||++|.+|||.|.+|+| .|-+||||||++ |+||+++|||||++|++||
T Consensus 460 Ife~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd 538 (1930)
T KOG0161|consen 460 IFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATD 538 (1930)
T ss_pred ccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999 588999999996 5599999999999999999
Q ss_pred HHHHHHHHHHh-cCCCCccCCC--CCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCc-
Q 000453 480 ETFSQKLCQTF-AKNNRFSKPK--LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE- 555 (1491)
Q Consensus 480 ~~~~~kl~~~~-~~~~~~~~p~--~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~- 555 (1491)
.+|++||...| ++|+.|.+|+ ....+|.|.||||+|.|++.||++||+|++++.++++|..|++++|+.||.+...
T Consensus 539 ~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~ 618 (1930)
T KOG0161|consen 539 KTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGA 618 (1930)
T ss_pred chHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhcc
Confidence 99999999999 8999999997 4567999999999999999999999999999999999999999999999987321
Q ss_pred ----------CccCCCCCcchhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhh
Q 000453 556 ----------ESSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISC 625 (1491)
Q Consensus 556 ----------~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~ 625 (1491)
...+++.|.||+..++.||+.||++|++|+|||||||.||..|.|+.+|.+.|+.||||.||||+|||+|
T Consensus 619 ~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR 698 (1930)
T KOG0161|consen 619 AAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICR 698 (1930)
T ss_pred chhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHH
Confidence 1234556789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccchHHHHHhhcccccCccc-CCCchHHHHHHHHHHcCCC--CeeeccceeecccchhhHHhHHHHhhhhHHHHH
Q 000453 626 AGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARK 702 (1491)
Q Consensus 626 ~Gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~ 702 (1491)
.|||.|++|.+|..||.++.|.... +..|.+.+|..++..+..+ -|++|.||||||+|+++.||.+|...+....+.
T Consensus 699 ~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~ 778 (1930)
T KOG0161|consen 699 QGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITL 778 (1930)
T ss_pred hhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999955555433 3467799999999988654 699999999999999999999999988776554
Q ss_pred HHHHHhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHhHhHHHHHHHHhhHHHHH
Q 000453 703 IQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLR-REAAALKIQTNFRAYVAQRSYLTVRS 769 (1491)
Q Consensus 703 IQ~~~R~~~~Rk~~~~~r~aai~IQa~~Rg~laRk~~~~~r-~~~AAi~IQ~~~Rg~~~Rr~y~~~r~ 769 (1491)
+|+.+|||++|+.|.+.+ +..|+.+||+++|.|...+.|.+++.
T Consensus 779 -----------------------fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~L 823 (1930)
T KOG0161|consen 779 -----------------------FQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRL 823 (1930)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 455555555555554433 44678899999999988888887654
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=3.9e-175 Score=1653.45 Aligned_cols=666 Identities=54% Similarity=0.898 Sum_probs=630.0
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHH
Q 000453 23 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYR 102 (1491)
Q Consensus 23 ~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~ 102 (1491)
.+++||+.|++|||++||++|+.||.++.||||+|++|||||||+++| +|+++++..|+++..+++|||||+||++||+
T Consensus 6 ~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 84 (677)
T smart00242 6 EGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAYR 84 (677)
T ss_pred CCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEEE
Q 000453 103 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 182 (1491)
Q Consensus 103 ~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l 182 (1491)
.|..+++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||++|
T Consensus 85 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l 163 (677)
T smart00242 85 NMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEI 163 (677)
T ss_pred HHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEE
Confidence 9999999999999999999999999999999999986532 346799999999999999999999999999999999999
Q ss_pred EecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHHH
Q 000453 183 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 261 (1491)
Q Consensus 183 ~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~ 261 (1491)
+||.+|.|+||+|.||||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|.
T Consensus 164 ~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 243 (677)
T smart00242 164 HFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFK 243 (677)
T ss_pred EECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999 68899999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCccccc-ccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEe
Q 000453 262 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSS-VIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 340 (1491)
Q Consensus 262 ~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 340 (1491)
+|+.||+.|||+++++.+||+|||||||||||+|.+..+.++. .+. +...++.||.||||++++|.++|+++++.+
T Consensus 244 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 244 ETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 9999999999999999999999999999999999865432221 233 345799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEeeccCCCCCCCCChHHHHHHHhhHHHH
Q 000453 341 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 420 (1491)
Q Consensus 341 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq 420 (1491)
++|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq 400 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQ 400 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHHH
Confidence 99999999999999999999999999999999999999999987778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCCCCccCCC
Q 000453 421 QHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPK 500 (1491)
Q Consensus 421 ~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~ 500 (1491)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|+
T Consensus 401 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~~ 480 (677)
T smart00242 401 QFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKPR 480 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -CCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCccCCCCCcchhHHHHHHHHHHHH
Q 000453 501 -LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 579 (1491)
Q Consensus 501 -~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~ 579 (1491)
..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+.......+..+..||+++|+.||+.||+
T Consensus 481 ~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~~ 560 (677)
T smart00242 481 KKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLMD 560 (677)
T ss_pred CCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999987544333344678999999999999999
Q ss_pred HHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCcccC-CCchHHH
Q 000453 580 TLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG-NYDDQVA 658 (1491)
Q Consensus 580 ~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~ 658 (1491)
+|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..... ..|+++.
T Consensus 561 ~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~~ 640 (677)
T smart00242 561 TLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKEA 640 (677)
T ss_pred HHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875432 3468999
Q ss_pred HHHHHHHcCC--CCeeeccceeecccchhhHHhHHHH
Q 000453 659 CQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRA 693 (1491)
Q Consensus 659 ~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~ 693 (1491)
|+.||+.+++ ++|++|+||||||++++..||.+|.
T Consensus 641 ~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 641 CEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 9999999875 5899999999999999999999874
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.4e-176 Score=1512.99 Aligned_cols=696 Identities=41% Similarity=0.705 Sum_probs=650.1
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHH
Q 000453 20 APAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDA 99 (1491)
Q Consensus 20 ~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~ 99 (1491)
....|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+++| +|++..|..|+|++..+.||||||+|++
T Consensus 15 ~k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladn 93 (1106)
T KOG0162|consen 15 KKHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADN 93 (1106)
T ss_pred ceeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHH
Confidence 456899999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccce
Q 000453 100 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKF 179 (1491)
Q Consensus 100 Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~ 179 (1491)
+|++|.-..+|||||||||||||||++||+||+|++.+|+ .+.+...|.+-||++||+|||||||||+||+||||||||
T Consensus 94 mY~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~-~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY 172 (1106)
T KOG0162|consen 94 MYRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSG-GGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKY 172 (1106)
T ss_pred HHHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhcc-CCcchhhhhhHhhccchHHHHhcchhhhccCCcccccce
Confidence 9999999999999999999999999999999999999984 455567788999999999999999999999999999999
Q ss_pred EEEEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHH
Q 000453 180 VEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAH 258 (1491)
Q Consensus 180 ~~l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~ 258 (1491)
+||+|+..|..+|++|.+|||||||||.|..+||||||||||+. |+.+.+..||+..|+.|.||+.++|+.++++||..
T Consensus 173 ~Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~k 252 (1106)
T KOG0162|consen 173 LEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRK 252 (1106)
T ss_pred EEEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHH
Confidence 99999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeE
Q 000453 259 EYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVM 338 (1491)
Q Consensus 259 ~f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 338 (1491)
+|.+|..||+++||.+++|+.||++||+|||||||.|.+. +..+.+.+. ..++-.|.|||||...|++.||.|.|
T Consensus 253 dfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M 327 (1106)
T KOG0162|consen 253 DFQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIM 327 (1106)
T ss_pred HHHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999873 233444443 36899999999999999999999998
Q ss_pred EeC----CceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCC-CCeEEEEeeccCCCCCCCCChHHHHHH
Q 000453 339 VTP----EEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-SKSIIGVLDIYGFESFKCNSFEQFCIN 413 (1491)
Q Consensus 339 ~~~----~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlcIN 413 (1491)
.+. .+.+.++|+++||.+.||||||+||.+||||||++||.+|..... ...+||||||||||+|++|||||||||
T Consensus 328 ~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CIN 407 (1106)
T KOG0162|consen 328 ESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCIN 407 (1106)
T ss_pred hhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHH
Confidence 754 478999999999999999999999999999999999999975443 578999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcC-cccccccchhhhCCC----CCchHHHHHHHHH
Q 000453 414 FTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKK-PGGIIALLDEACMFP----KSTHETFSQKLCQ 488 (1491)
Q Consensus 414 yaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~-~~Gil~lLdee~~~p----~~~d~~~~~kl~~ 488 (1491)
|.||||||.|++-+++.|||||.+|||.|+.|+|.||.-|+||||.| |.||+++|||.|-.. .|.|++|+++|..
T Consensus 408 fVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~ 487 (1106)
T KOG0162|consen 408 FVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNK 487 (1106)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 679999999999753 4679999999999
Q ss_pred HhcCCCCccCCCCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCccCCCCCcchhH
Q 000453 489 TFAKNNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGS 568 (1491)
Q Consensus 489 ~~~~~~~~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~ 568 (1491)
.+++|++|.. ....|+|+||||+|+||++||.+||||.|..|++.|++.|+++|++.||+...+.. +..+.+|.|+
T Consensus 488 ~~~s~phF~~---~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~d-skrRP~Tag~ 563 (1106)
T KOG0162|consen 488 LFGSHPHFES---RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDAD-SKRRPPTAGD 563 (1106)
T ss_pred HhcCCCcccc---ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccc-ccCCCCCchh
Confidence 9999999974 34789999999999999999999999999999999999999999999999754443 3346689999
Q ss_pred HHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCc
Q 000453 569 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 648 (1491)
Q Consensus 569 ~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 648 (1491)
+.+.|.++|++||..|.||||||||||+.|.|+.||...|++|+.|+|+-|.|||+|+||.+|..|+.|++||.+|.|..
T Consensus 564 kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t 643 (1106)
T KOG0162|consen 564 KIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQT 643 (1106)
T ss_pred hHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cc-CCCchHHHHHHHHHHcCC--CCeeeccceeecccc-hhhHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHhhhhhhHH
Q 000453 649 LE-GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAG-QMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAV 724 (1491)
Q Consensus 649 ~~-~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai 724 (1491)
+. +..|++.+|+.||+...+ +.||+|.||||+|.. .+-.||.+|+......|.+||+.||+|++||+|.++|.-+.
T Consensus 644 ~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t 723 (1106)
T KOG0162|consen 644 WPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEAT 723 (1106)
T ss_pred ccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 346999999999998765 589999999999985 46789999999999999999999999999999988887665
Q ss_pred HH
Q 000453 725 IL 726 (1491)
Q Consensus 725 ~I 726 (1491)
.+
T Consensus 724 ~l 725 (1106)
T KOG0162|consen 724 KL 725 (1106)
T ss_pred HH
Confidence 43
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2.9e-173 Score=1642.15 Aligned_cols=662 Identities=51% Similarity=0.845 Sum_probs=620.9
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000453 24 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 103 (1491)
Q Consensus 24 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 103 (1491)
|+|||+.|++|||++||++|+.||.++.||||+|++|||||||+.+| +|++++++.|+++..+++|||||+||++||+.
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEEEE
Q 000453 104 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 183 (1491)
Q Consensus 104 m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 183 (1491)
|+++++||||||||||||||||++|++|+||+.+++.. ...++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999997643 356999999999999999999999999999999999999
Q ss_pred ecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000453 184 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 262 (1491)
Q Consensus 184 f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 262 (1491)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999988899999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccc--cccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEe
Q 000453 263 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDS--SVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 340 (1491)
Q Consensus 263 ~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 340 (1491)
++.||++|||+++++.+||+|||||||||||+|.+..+.+. +.+. +...++.||.||||++++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543322 3333 345799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEeeccCCCCCCCCChHHHHHHHhhHHHH
Q 000453 341 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 420 (1491)
Q Consensus 341 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq 420 (1491)
+++.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999887677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCCCCccC-C
Q 000453 421 QHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSK-P 499 (1491)
Q Consensus 421 ~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~-p 499 (1491)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+++|++|++||++.+++|++|.. +
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988643 4
Q ss_pred CCCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcC-----------ccCCCCCcchhH
Q 000453 500 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE-----------SSKSSKFSSIGS 568 (1491)
Q Consensus 500 ~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~-----------~~~~~~~~tv~~ 568 (1491)
+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..... ..+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 456789999999999999999999999999999999999999999999999764211 112235689999
Q ss_pred HHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCc
Q 000453 569 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 648 (1491)
Q Consensus 569 ~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 648 (1491)
+|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCchHHHHHHHHHHcCC--CCeeeccceeecccchhhHHhHHH
Q 000453 649 LEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 692 (1491)
Q Consensus 649 ~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 692 (1491)
.......++.|+.++..+++ ++|++|+||||||++++..||..|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 54333334449999998887 489999999999999999999865
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.2e-172 Score=1628.77 Aligned_cols=660 Identities=31% Similarity=0.487 Sum_probs=590.5
Q ss_pred CCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHH
Q 000453 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAM 104 (1491)
Q Consensus 25 ~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 104 (1491)
||||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+| ||++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEEEEe
Q 000453 105 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQF 184 (1491)
Q Consensus 105 ~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f 184 (1491)
..+++||||||||||||||||++|++|+|||.+++..+. ...+ ++|+++||||||||||||++||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~-~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG-RVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc-ccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999764321 1234 57999999999999999999999999999999999
Q ss_pred cCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCC-ccccCCCCcHHHHHH
Q 000453 185 DKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN-CYELDGVSDAHEYLA 262 (1491)
Q Consensus 185 ~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~-~~~~~~~~d~~~f~~ 262 (1491)
|.+|.|+||+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++..+.+.+.++ +...++++|+++|..
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 788999999998765543333322 233567899999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEeCC
Q 000453 263 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 342 (1491)
Q Consensus 263 ~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 342 (1491)
|+.||++|||+++++..||+|||||||||||+|.... +.+.+.+ ...++.||.||||++++|.++|+++++..++
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999997622 2233333 2469999999999999999999988766553
Q ss_pred c-------------eEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEeeccCCCCCCC-----
Q 000453 343 E-------------VITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKC----- 404 (1491)
Q Consensus 343 e-------------~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 404 (1491)
+ .++.++++.+|.++||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3345678899999999999999999999999999999998776778999999999999984
Q ss_pred -CChHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcccccccc-cChHHHHHHhhcCc--------------ccccccc
Q 000453 405 -NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKP--------------GGIIALL 468 (1491)
Q Consensus 405 -NsfeQlcINyaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~-~dn~~~ldli~~~~--------------~Gil~lL 468 (1491)
|||||||||||||||||+|+++||+.||++|.+|||+|+++.+ +||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999987654 79999999999865 5999999
Q ss_pred hhhhCCCCCchHHHHHHHHHHhcCCCCccCCC------CCCCCeEEEecccc--eeeeccchhhhcchhh-HHHHHHHHH
Q 000453 469 DEACMFPKSTHETFSQKLCQTFAKNNRFSKPK------LSRTDFTILHYAGE--VTYQANHFLDKNKDYV-VAEHQALLT 539 (1491)
Q Consensus 469 dee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~------~~~~~F~i~Hyag~--V~Y~~~gfl~kN~d~~-~~~~~~ll~ 539 (1491)
||||++|++||++|++||++.+++|++|.++. .....|+|+||||. |+|+++||++||||.+ +.+++++|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999888887622 12468999999995 9999999999999975 689999999
Q ss_pred hcchhHHhhcCCCCCc-------------Ccc-----C-------------CCCCcchhHHHHHHHHHHHHHHhccCCeE
Q 000453 540 AAKCSFVAGLFPPLPE-------------ESS-----K-------------SSKFSSIGSRFKLQLQSLMETLNATAPHY 588 (1491)
Q Consensus 540 ~S~~~~v~~lf~~~~~-------------~~~-----~-------------~~~~~tv~~~f~~~l~~L~~~l~~t~~hf 588 (1491)
+|++++|+.||+.... ..+ + ..+..||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999954210 000 0 01345899999999999999999999999
Q ss_pred EEecCCCCCCC----------------------CCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhccccc
Q 000453 589 IRCVKPNNVLK----------------------PSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAP 646 (1491)
Q Consensus 589 IrCIkPN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~ 646 (1491)
|||||||+.|. |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999874 78999999999999999999999999999999999999999999998
Q ss_pred Cccc------CCCchHHHHHHHHHHcCCC--CeeeccceeecccchhhHHhHHH
Q 000453 647 EVLE------GNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARR 692 (1491)
Q Consensus 647 ~~~~------~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 692 (1491)
.... ...|++++|+.||..++++ +|++|+||||||+++++.||..|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6431 2358899999999998864 89999999999999999999876
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.1e-170 Score=1463.00 Aligned_cols=748 Identities=39% Similarity=0.664 Sum_probs=672.8
Q ss_pred EEEeccCccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcC
Q 000453 5 QVVTSVSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA 84 (1491)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~ 84 (1491)
||+.-.+++||...| ++..+||-|.|-||||+.+|+|++.||..|.||||+.+||||||||..++.+|+++.+..|+|+
T Consensus 40 t~~~~~edv~a~eeD-~~k~veDNC~Lm~LNEATlL~Nik~RY~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~Gk 118 (1259)
T KOG0163|consen 40 TVTRHFEDVHACEED-SPKDVEDNCELMHLNEATLLNNIKLRYYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGK 118 (1259)
T ss_pred ceeehhhhccccccc-cccccccccceeeccHHHHhhhhhhhhccCchhhhhhhhheeccchhhcccccCHHHHHHhcCC
Confidence 577778889988654 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhcc
Q 000453 85 AFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGN 164 (1491)
Q Consensus 85 ~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGN 164 (1491)
.+|.+||||||||+.|||.|..-+.+|||||||||||||||++|++++||+.--|+ +..|+++|+++|||||||||
T Consensus 119 SLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGN 194 (1259)
T KOG0163|consen 119 SLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRYLCESWGS----AGPIQTRILEANPILEAFGN 194 (1259)
T ss_pred cccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHHHHhccCC----CCcHHHHHhccChHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999986544 35799999999999999999
Q ss_pred ccccCCCCCCcccceEEEEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccc
Q 000453 165 AKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYL 243 (1491)
Q Consensus 165 AkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl 243 (1491)
|||+||+||||||||++|||+.+|.++|+-++.||||+||||.|+.+|||||||||||| ++++.++.|.|+.|++|+||
T Consensus 195 AKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL 274 (1259)
T KOG0163|consen 195 AKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYL 274 (1259)
T ss_pred chhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred cCCCc--------------------------cccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccC
Q 000453 244 NQSNC--------------------------YELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAK 297 (1491)
Q Consensus 244 ~~~~~--------------------------~~~~~~~d~~~f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~ 297 (1491)
+.|-. ..-+-+||..+|..+..||..+|++++|...||+++|||||||||+|.+
T Consensus 275 ~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE 354 (1259)
T KOG0163|consen 275 KRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEE 354 (1259)
T ss_pred hcchhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhc
Confidence 85411 1112368999999999999999999999999999999999999999987
Q ss_pred CCc--ccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEeC-----CceEeccCChhhHHHhHHHHHHHHHHHHH
Q 000453 298 GKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP-----EEVITRTLDPVNAVASRDALAKTIYSRLF 370 (1491)
Q Consensus 298 ~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~-----~e~~~~~~~~~~a~~~rdalak~lY~~LF 370 (1491)
..+ ..+|.+.+ .+...|..+|+|||+|.++|...||.|.|.+. |..|.+||.+.+|..+||||||++|++||
T Consensus 355 ~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLF 433 (1259)
T KOG0163|consen 355 IPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLF 433 (1259)
T ss_pred ccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHH
Confidence 542 34566665 35568999999999999999999999998653 45789999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCeEEEEeeccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcccccccccCh
Q 000453 371 DWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDN 450 (1491)
Q Consensus 371 ~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn 450 (1491)
||||.+||.++-. ..+..+||||||.|||-|.+||||||||||+|||||+|||+.+++.||+.|.+||++...|+|.||
T Consensus 434 D~lV~~iNqsiPF-e~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DN 512 (1259)
T KOG0163|consen 434 DWLVGRINQSIPF-EKSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDN 512 (1259)
T ss_pred HHHHHHhhccccc-ccccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccc
Confidence 9999999999954 346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCCCCccCCCCC----------CCCeEEEecccceeeecc
Q 000453 451 QDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS----------RTDFTILHYAGEVTYQAN 520 (1491)
Q Consensus 451 ~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~Hyag~V~Y~~~ 520 (1491)
|+||+|||.|..|||+|||||.++|+.+++.|....++.+++|-++.-||.+ ...|.|+||||.|.|++.
T Consensus 513 qDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~ 592 (1259)
T KOG0163|consen 513 QDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETE 592 (1259)
T ss_pred hhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechH
Confidence 9999999999999999999999999999999999999999998888777653 247999999999999999
Q ss_pred chhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCccC--CC--CCcchhHHHHHHHHHHHHHHhccCCeEEEecCCCC
Q 000453 521 HFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSK--SS--KFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNN 596 (1491)
Q Consensus 521 gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~--~~--~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~ 596 (1491)
.|+|||.|.+...+..|+..|+++|+.+||++....+.+ .+ ++-|||++|+.||..||+.|++|..|||||||||.
T Consensus 593 ~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~ 672 (1259)
T KOG0163|consen 593 QFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNS 672 (1259)
T ss_pred HHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCcc
Confidence 999999999999999999999999999999975433222 22 56799999999999999999999999999999999
Q ss_pred CCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccchHHHHHhhcccccCcccCCCchHHHHHHHHHHcCCC--Ceeec
Q 000453 597 VLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIG 674 (1491)
Q Consensus 597 ~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG 674 (1491)
...|+.||...++.||.|+|+...++++..|||+|-+|.|.+.-|+-.+|+.+. ..|++..|+.+...+|++ +|+||
T Consensus 673 kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFG 751 (1259)
T KOG0163|consen 673 KMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFG 751 (1259)
T ss_pred ccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCccccccc
Confidence 999999999999999999999999999999999999999999999988887655 469999999999999985 89999
Q ss_pred cceeecccchhhHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHh
Q 000453 675 KTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTN 754 (1491)
Q Consensus 675 kTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~ 754 (1491)
.||||||+|.++..+.+-..--...+..|+ .+..|+.|-+|.+..-++..+=.. ..+. ..|..+.+++|++
T Consensus 752 lTKVFFr~GKFaEFDqiMksDPe~m~~lv~-kVn~WLv~sRWkk~q~~a~sVIKL----kNkI----~yRae~v~k~Q~~ 822 (1259)
T KOG0163|consen 752 LTKVFFRPGKFAEFDQIMKSDPETMLELVA-KVNKWLVRSRWKKSQYGALSVIKL----KNKI----IYRAECVLKAQRI 822 (1259)
T ss_pred ceeEeecCcchHHHHHHHhcCHHHHHHHHH-HHHHHHHHhHHHHhhhhhhheeeh----hhHH----HHHHHHHHHHHHH
Confidence 999999999999998876655555555554 467899998887665443322110 0111 1244678899999
Q ss_pred HHHHHHHHhhHHHHH
Q 000453 755 FRAYVAQRSYLTVRS 769 (1491)
Q Consensus 755 ~Rg~~~Rr~y~~~r~ 769 (1491)
+|||++|++++....
T Consensus 823 ~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 823 ARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHhhhchHHH
Confidence 999999999876543
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1.9e-165 Score=1592.59 Aligned_cols=653 Identities=49% Similarity=0.852 Sum_probs=578.8
Q ss_pred CCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHH
Q 000453 25 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAM 104 (1491)
Q Consensus 25 ~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 104 (1491)
||||+.|++|||++||++|+.||..+.||||+|++|||||||+++| ||++++++.|+++..+++|||||+||++||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 7999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCC-CCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEEEE
Q 000453 105 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 183 (1491)
Q Consensus 105 ~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~-~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 183 (1491)
+++++||||||||||||||||++|++|+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred ecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000453 184 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 262 (1491)
Q Consensus 184 f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 262 (1491)
||.+|.++||+|.+||||||||+.+++||||||||||||+ ++++++++|+|.++.+|+||+++++..+++.||+.+|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCCcccccccccccchHHHHHHHHHcCCCHHHHHHHHhheeEEeCC
Q 000453 263 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 342 (1491)
Q Consensus 263 ~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 342 (1491)
++.||++|||+++++.+||+|||||||||||+|....+.+.+.+.+. ..++.||.||||++++|.++||++++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999998664455555544 359999999999999999999999999999
Q ss_pred ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCC-CCCeEEEEeeccCCCCCCCCChHHHHHHHhhHHHHH
Q 000453 343 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQ 421 (1491)
Q Consensus 343 e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~ 421 (1491)
|.+++++++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+|..||||||||||||||||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999999876 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccccccc-cChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHh-cCCCCccCC
Q 000453 422 HFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTF-AKNNRFSKP 499 (1491)
Q Consensus 422 ~f~~~~f~~eq~~y~~E~I~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~~~~p 499 (1491)
+|++++|+.||++|.+|||+|..++| +||++|||||+++|.|||++|||||++|+++|++|++++...+ ++++.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 888999888
Q ss_pred C----CCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCc--------------C-----
Q 000453 500 K----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE--------------E----- 556 (1491)
Q Consensus 500 ~----~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--------------~----- 556 (1491)
+ ..+..|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.... .
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 3678999999999999999999999999999999999999999999999976421 0
Q ss_pred --ccCCCCCcchhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccCCcccch
Q 000453 557 --SSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTF 634 (1491)
Q Consensus 557 --~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~ 634 (1491)
.....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++|||++||+|+++|++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCcccC----CCchHHHHHHHHHHcCC--CCeeeccceeecc
Q 000453 635 YEFVNRFGILAPEVLEG----NYDDQVACQMILDKKGL--KGYQIGKTKVFLR 681 (1491)
Q Consensus 635 ~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr 681 (1491)
.+|++||++|++..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999985532 46899999999999988 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=1.8e-113 Score=1086.76 Aligned_cols=752 Identities=37% Similarity=0.562 Sum_probs=661.1
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHH
Q 000453 22 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 101 (1491)
Q Consensus 22 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 101 (1491)
..+++||+.|..++|+.++.+|..||..+.||||+|.+|++||||+.+|.+|.+..+..|.++.++++|||||++|+.||
T Consensus 60 ~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y 139 (1062)
T KOG4229|consen 60 VEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAY 139 (1062)
T ss_pred cccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhccccccCCCCCCcccceEE
Q 000453 102 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 181 (1491)
Q Consensus 102 ~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 181 (1491)
++|++...||||+||||||||||++|+++++||+.++. .....++++|+.+||+|||||||+|.+|||||||||||+
T Consensus 140 ~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~ 216 (1062)
T KOG4229|consen 140 QDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIK 216 (1062)
T ss_pred HhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEE
Confidence 99999999999999999999999999999999999983 122568899999999999999999999999999999999
Q ss_pred EEecCCCCccceeeeccccccccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCCCccccCCCcccc-CCCCcHHH
Q 000453 182 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYEL-DGVSDAHE 259 (1491)
Q Consensus 182 l~f~~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~-~~~~d~~~ 259 (1491)
+.|...|.|.||.+.-||||||||+.|+.+||||||||++++ .+.++++.+.|+.+.+|.||+++.+..+ ++.++..+
T Consensus 217 ~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~ 296 (1062)
T KOG4229|consen 217 VNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQ 296 (1062)
T ss_pred eccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHh
Confidence 999999999999999999999999999999999999999999 6778899999999999999999999999 99999999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhccccccCCC--cccccccccccchHHHHHHHHHcCCCHHHHHHHHhhee
Q 000453 260 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGK--EIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 337 (1491)
Q Consensus 260 f~~~~~al~~lG~~~~~~~~i~~ilaaILhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 337 (1491)
|..+..||..+||+.+++.+||+++|||||+|||+|.... ..|.+.+.+. ..++.+|.||+++++.|.+++|.++
T Consensus 297 ~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~---~~v~~vA~lL~~~~~~l~~alt~~~ 373 (1062)
T KOG4229|consen 297 FIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENE---EAVERVACLLLIKEKLLQEALTARV 373 (1062)
T ss_pred HHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccc---hHHHHHHHHhhcCHHHhhhhhcccc
Confidence 9999999999999999999999999999999999997532 2344445443 4799999999999999999999999
Q ss_pred EEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCC--CCeEEEEeeccCCCCCCCCChHHHHHHHh
Q 000453 338 MVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD--SKSIIGVLDIYGFESFKCNSFEQFCINFT 415 (1491)
Q Consensus 338 ~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfeQlcINya 415 (1491)
.+++++.+..+++.++|.++||++||.||++||.|||.+||..+.++.. ...+||||||||||+|+.|||||+|||||
T Consensus 374 ~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~A 453 (1062)
T KOG4229|consen 374 NVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLA 453 (1062)
T ss_pred eeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987655 37899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhhhCCCCCchHHHHHHHHHHhcCCCC
Q 000453 416 NEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNR 495 (1491)
Q Consensus 416 NEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~ 495 (1491)
||+||++||+|||..||+||..|+|+|..|.|.||.+|+|+|..||.||+.+||||+.+|+++|.+++.|+..+++.+..
T Consensus 454 ne~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~ 533 (1062)
T KOG4229|consen 454 NEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNL 533 (1062)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ccCCCC-CCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHHhcchhHHhhcCCCCCcCc-----------------
Q 000453 496 FSKPKL-SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES----------------- 557 (1491)
Q Consensus 496 ~~~p~~-~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----------------- 557 (1491)
+..|+. ....|+|.||||.|.|++.||++||+|.++.+++.++++|.+.++..++...+...
T Consensus 534 y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~ 613 (1062)
T KOG4229|consen 534 YVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPL 613 (1062)
T ss_pred cccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccc
Confidence 777765 45699999999999999999999999999999999999998888876654211000
Q ss_pred ----------------c-------------------------------C-------------------------------
Q 000453 558 ----------------S-------------------------------K------------------------------- 559 (1491)
Q Consensus 558 ----------------~-------------------------------~------------------------------- 559 (1491)
+ .
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~ 693 (1062)
T KOG4229|consen 614 EVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSS 693 (1062)
T ss_pred hhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhh
Confidence 0 0
Q ss_pred -----------CC--------------C--------------------------------------------------Cc
Q 000453 560 -----------SS--------------K--------------------------------------------------FS 564 (1491)
Q Consensus 560 -----------~~--------------~--------------------------------------------------~~ 564 (1491)
.. + ..
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e 773 (1062)
T KOG4229|consen 694 RGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRE 773 (1062)
T ss_pred cccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccc
Confidence 00 0 00
Q ss_pred chhH----------------HHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhcccChhHHHHhhhccC
Q 000453 565 SIGS----------------RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGY 628 (1491)
Q Consensus 565 tv~~----------------~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gy 628 (1491)
.++. ++......++..+....|.|++|++-|..+....|+...|..|+++.|+++..+++..+|
T Consensus 774 ~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~ 853 (1062)
T KOG4229|consen 774 RVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLY 853 (1062)
T ss_pred hhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccc
Confidence 0111 122344457777778889999999999888888999999999999999999999999999
Q ss_pred CcccchHHHHHhhcccccCcccCCCchHHHHHHHHHH--cCCCCeeeccceeecccchhhHHhHHH-HhhhhHHHHHHHH
Q 000453 629 PTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDK--KGLKGYQIGKTKVFLRAGQMAELDARR-AEVLGNAARKIQR 705 (1491)
Q Consensus 629 p~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~--~~~~~~~iGkTkVFlr~~~~~~Le~~r-~~~l~~aa~~IQ~ 705 (1491)
+..+++.+|...+++..|.... ......... ...++++.|+++||+.......++..- .+....-+...|+
T Consensus 854 ~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~ 927 (1062)
T KOG4229|consen 854 FAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQK 927 (1062)
T ss_pred cccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHH
Confidence 9999999999999998873221 111112221 134689999999999887655443332 2222213677899
Q ss_pred HHhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHH
Q 000453 706 QTRTYIARKEFILLRNAAVILQSFLRGEMARKLYE-QLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVAR 784 (1491)
Q Consensus 706 ~~R~~~~Rk~~~~~r~aai~IQa~~Rg~laRk~~~-~~r~~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aR 784 (1491)
+++....|+.+.++..+.+.+| |++++.|+... ......++.-+|..|+.+..+..+.-.+.+++.+|..+++...+
T Consensus 928 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 1005 (1062)
T KOG4229|consen 928 WFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYT 1005 (1062)
T ss_pred HHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhh
Confidence 9999999999999999999999 88888887444 22344678889999999999999999999999999999887665
Q ss_pred HHH
Q 000453 785 NEF 787 (1491)
Q Consensus 785 r~~ 787 (1491)
..+
T Consensus 1006 ~~~ 1008 (1062)
T KOG4229|consen 1006 MIF 1008 (1062)
T ss_pred hhH
Confidence 543
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.96 E-value=9e-29 Score=294.83 Aligned_cols=298 Identities=19% Similarity=0.342 Sum_probs=227.7
Q ss_pred HHHhhhccCCCCCCccchhHHHHHHHhcccc--cccch----HHHHHHHHHHHHhhhhcc-CCcccchhhHHHHHHHHHH
Q 000453 1083 LIKCISQDLGFSGGKPVAACLIYKCLLHWRS--FEVER----TSIFDRIIQTISGAIEVH-DNNDRLSYWLSNASTLLLL 1155 (1491)
Q Consensus 1083 l~~~l~~~~~~~~~kp~pA~il~~cl~~~~~--~~~e~----~~ll~~ii~~I~~~v~~~-~d~~~l~fWLSN~~~LL~~ 1155 (1491)
|-..+-.+.+-..++..|-|- |..-.|.+. +..++ ..||.++.+.++.++..+ .+-..|+|||+|++++|||
T Consensus 554 L~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhf 632 (1629)
T KOG1892|consen 554 LSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHF 632 (1629)
T ss_pred HHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHH
Confidence 333333444444444444331 222233332 44554 789999999999999977 4456999999999999999
Q ss_pred HHHhhhhcCCCCCCcccccCCccchhhcccccccCCCCCCCcccccccccccchhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 000453 1156 LQRTLKASGAASLTPQRRRSTSSSLLGRMSQGLRASPQSAGIPFLNSRILSGLDDLRQVEAKYPALLFKQQLTAFLEKIY 1235 (1491)
Q Consensus 1156 lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~fkqqL~~~~~~iy 1235 (1491)
++++-..+ ++ .+ +. +..|..+|+.+|
T Consensus 633 ik~Dr~ls-------------------~~------------------~~-----~a------------q~vla~~vq~aF 658 (1629)
T KOG1892|consen 633 IKQDRDLS-------------------RI------------------TL-----DA------------QDVLAHLVQMAF 658 (1629)
T ss_pred HHhccchh-------------------he------------------eh-----hH------------HHHHHHHHHHHH
Confidence 99841100 00 00 00 244888899999
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCCCCccccccCCCcchhHhhhhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000453 1236 GMIRDNLKKEISPLLGLCIQAPRTSRASLIKGRSQANAVAQQALIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIF 1315 (1491)
Q Consensus 1236 ~~l~~~l~~~L~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf 1315 (1491)
.-|+.+++.+|++.+...+... . ...+...++|..|+..|.+|+.|+|+..|+.|+|+|||
T Consensus 659 r~LV~clqsel~~~~~afLden-~------------------~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLf 719 (1629)
T KOG1892|consen 659 RYLVHCLQSELNNYMPAFLDEN-S------------------LQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLF 719 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc-c------------------ccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999999998875443210 0 12234568999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhhc--CCCCCcchhhHHHhchHHHHHHHhhcCCCcccchHHHhHHHHHHHHHHhhcCCCccCHHHHHhc
Q 000453 1316 SFINVQLFNSLLLR--RECCSFSNGEFVKAGLAELEQWCHDSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITND 1393 (1491)
Q Consensus 1316 ~~ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~ 1393 (1491)
||||+++||+|+.. ..+|+--||--|++.|..||.||...|++.+++ |||..|+||++||+++|....++..+ ..
T Consensus 720 H~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~l-~s 796 (1629)
T KOG1892|consen 720 HFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDKYAPDDIPNL-NS 796 (1629)
T ss_pred HHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccccChhhHHhh-cc
Confidence 99999999999998 789999999999999999999999999998888 99999999999999997666677777 68
Q ss_pred cCCCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHhhhhccc---ccCCCCc--ccccCCCCCcccccc
Q 000453 1394 LCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVMMMDES---NNAVSSS--FLLDDDSSIPFTVDD 1458 (1491)
Q Consensus 1394 ~C~~Ls~~Ql~kiL~~Y~~d~~e~~~vs~~~i~~v~~~~~~~~---~~~~~~~--lllD~~~~~Pf~~~~ 1458 (1491)
.|.+||+.|+.+||..|++++.| .++|.+++..+..+..+.. .-.+... |--+++.-+||.+|+
T Consensus 797 tCfkLNSLQ~~alLq~~~~~~~e-~~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 797 TCFKLNSLQLQALLQNYHCAPDE-PFIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred chhhcchHHHHHHHhcCCCCCCC-CCCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecC
Confidence 99999999999999999999999 4999999998865432211 1122222 333666778998887
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=1.6e-27 Score=234.38 Aligned_cols=105 Identities=36% Similarity=0.653 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhcCCCCCcchhhHHHhchHHHHHHHhhcCCCcccchHHHhHHHHHHHHHHhhcCCCccCHH
Q 000453 1309 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLK 1388 (1491)
Q Consensus 1309 Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~ 1388 (1491)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|.+.. ++++|.|++||++|||++|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999995544 57999999999999999755566555
Q ss_pred HHHhccCCCCCHHHHHHHHhcCccCCCC
Q 000453 1389 EITNDLCPVLSIQQLYRISTMYWDDKYG 1416 (1491)
Q Consensus 1389 ~i~~~~C~~Ls~~Ql~kiL~~Y~~d~~e 1416 (1491)
.+ .++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 55 7999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.40 E-value=1.3e-09 Score=148.14 Aligned_cols=629 Identities=15% Similarity=0.160 Sum_probs=279.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhee--EEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEE
Q 000453 314 HLNMTAELLRCDAQSLEDALIKRV--MVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSII 391 (1491)
Q Consensus 314 ~l~~~a~LLgv~~~~L~~~l~~~~--~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~I 391 (1491)
.+..+-..||+++++....+---. +..|+=.+...-..++|.-.....|-.+-. |+..=+.-...++..+ ...+.
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKvg 400 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKVG 400 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceecc
Confidence 466777899999988765543211 112221111111344444444333333311 2222222222233221 11244
Q ss_pred EEeeccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcccccccccChHHHHHHhhcCcccccccchhh
Q 000453 392 GVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEA 471 (1491)
Q Consensus 392 giLDi~GFE~f~~NsfeQlcINyaNEkLq~~f~~~~f~~eq~~y~~E~I~~~~i~~~dn~~~ldli~~~~~Gil~lLdee 471 (1491)
+-.++.|+. -+| .+++=+-|...-...+|.+ ...+...+++|. .+-..+|.+++-...=||..
T Consensus 401 ~e~v~k~q~------~~q--~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---- 463 (1930)
T KOG0161|consen 401 REWVSKAQN------VEQ--VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---- 463 (1930)
T ss_pred chhhhhcch------HHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCc----
Confidence 455666664 344 7777788887777777764 566777888886 34444555554322112221
Q ss_pred hCCCCCchHH----HH-HHHHHHhcCCCCccCCC----CCCCCeEEEecccceeeeccchhhhcchhhHHHHHHHHH---
Q 000453 472 CMFPKSTHET----FS-QKLCQTFAKNNRFSKPK----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLT--- 539 (1491)
Q Consensus 472 ~~~p~~~d~~----~~-~kl~~~~~~~~~~~~p~----~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~--- 539 (1491)
.|-+. |. +||.+-| +|.-|+.-. --.-.+..-||+-+ -=.+.+-|+|=. .+..+|-
T Consensus 464 -----nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidfG~D-lq~~idLIEkp~-----Gi~slLdEEc 531 (1930)
T KOG0161|consen 464 -----NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDFGLD-LQPTIDLIEKPM-----GILSLLDEEC 531 (1930)
T ss_pred -----CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeeccccc-hhhhHHHHhchh-----hHHHHHHHHH
Confidence 11111 11 3444333 343443210 01225666666211 111222333311 2222221
Q ss_pred ----hcchhHHhhcCCCCCcCccCCCCCcchhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcchhhHhhhccc
Q 000453 540 ----AAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCG 615 (1491)
Q Consensus 540 ----~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~ 615 (1491)
+|...|+..|+.... ++..+|.... ..+...-+...+-+.+ |+|.-+|--.++..-.+..|+.+|+++
T Consensus 532 ~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s 603 (1930)
T KOG0161|consen 532 VVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQS 603 (1930)
T ss_pred hcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhc
Confidence 233344444432210 1112221111 2233444444444554 999999998888888889999999999
Q ss_pred ChhHHHHhhhccCCcccchHHHHHhhcccccCcccCC-----CchHHHHHHHHHHcCCCCeeeccceeec---ccchh--
Q 000453 616 GVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGN-----YDDQVACQMILDKKGLKGYQIGKTKVFL---RAGQM-- 685 (1491)
Q Consensus 616 gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~-----~~~~~~~~~il~~~~~~~~~iGkTkVFl---r~~~~-- 685 (1491)
+ .+-|...-.| +..+..+..++.. ......+. .-.+.....++..+....-.|=+-=|+. ++|++
T Consensus 604 ~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~ 678 (1930)
T KOG0161|consen 604 T-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDA 678 (1930)
T ss_pred c-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCH
Confidence 9 8888776666 6667777766654 21111111 1122333333333322211111111111 11111
Q ss_pred -hHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHH--HHH-----HHHHHHHHHHhHHH-------HHHH
Q 000453 686 -AELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSF--LRG-----EMARKLYEQLRREA-------AALK 750 (1491)
Q Consensus 686 -~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQa~--~Rg-----~laRk~~~~~r~~~-------AAi~ 750 (1491)
..|..+|=.-+-. ++.| +-.||-.|-.|...+.---.+... -.| .-.++.+..+.... .=+.
T Consensus 679 ~lvl~QLrcngVLE-gIRi--cR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvF 755 (1930)
T KOG0161|consen 679 PLVLNQLRCNGVLE-GIRI--CRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVF 755 (1930)
T ss_pred HHHHHHhhccCcHH-HHHH--HHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeee
Confidence 1222222211111 1222 223444443332221100000000 011 11111111111000 0011
Q ss_pred HhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000453 751 IQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKR-TKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCR 829 (1491)
Q Consensus 751 IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~-~~aAi~IQ~~~R~~~~r~~y~~~~~a~i~iQ~~~R~~ 829 (1491)
..+-+-+++.-.+=..+...++.+|+.+||+++|+.|..+.+ ..|..+||++.|.|...+.| .|||-+
T Consensus 756 fkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w-----------~W~~Lf 824 (1930)
T KOG0161|consen 756 FKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW-----------PWWRLF 824 (1930)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----------HHHHHH
Confidence 111122333333344455567889999999999999976654 45677899999999888877 455555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH---HHHHH
Q 000453 830 VARRELRK-------LKMAARETGALQEAKNKLEKRVEELT--------------WRLQIEKRLRTDLEEAK---SQEIA 885 (1491)
Q Consensus 830 ~ark~l~~-------lk~~a~e~~~l~~~~~~le~k~~el~--------------~~L~~e~~~~~~lee~~---~~e~~ 885 (1491)
..-+++.. ++..+.++..+++...+.|....+++ .+++.++....+.++.. ..+..
T Consensus 825 ~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~ 904 (1930)
T KOG0161|consen 825 TKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQ 904 (1930)
T ss_pred HHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444432 22223333444444444444333333 33333322222211111 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 886 KLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFT 965 (1491)
Q Consensus 886 ~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ 965 (1491)
.++..+.++..++++.+.+........+ +++..+. ..+..+++++....+++.+....+.++..++.++.
T Consensus 905 ~le~~l~~~~~~~e~~ee~~~~le~~~~----~~~~e~~------~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~ 974 (1930)
T KOG0161|consen 905 ELEKELKELKERLEEEEEKNAELERKKR----KLEQEVQ------ELKEQLEELELTLQKLELEKNAAENKLKNLEEEIN 974 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333332222111111111 1111111 12334444444455555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 966 VSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 966 ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
.++..+.++.++.+.++..+.++.+.++..+++...|.+...+|.+
T Consensus 975 ~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~ 1020 (1930)
T KOG0161|consen 975 SLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQ 1020 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666666666666655555555544
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.62 E-value=4.1e-08 Score=107.38 Aligned_cols=90 Identities=27% Similarity=0.314 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCchhhhhc-cccccCCC
Q 000453 93 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFG-NAKTVRNN 171 (1491)
Q Consensus 93 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snpilEaFG-NAkT~~N~ 171 (1491)
||+.+..++..|+ ++.|+||+..|+||||||++..--. ...+--...++ .+++..+..++++ +|.|..|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 8998889999998 5799999999999999997743110 00000001222 3777888999999 99999999
Q ss_pred CCCcccceEEEEecCCCCcc
Q 000453 172 NSSRFGKFVEIQFDKNGRIS 191 (1491)
Q Consensus 172 NSSRfgk~~~l~f~~~g~i~ 191 (1491)
+|||+..++.|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999997655443
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.51 E-value=9.5e-05 Score=97.46 Aligned_cols=129 Identities=23% Similarity=0.129 Sum_probs=70.6
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHHHHH
Q 000453 709 TYIARKEFILLRNAAVILQSFLRGEMARKLYEQLR-REAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEF 787 (1491)
Q Consensus 709 ~~~~Rk~~~~~r~aai~IQa~~Rg~laRk~~~~~r-~~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~ 787 (1491)
+.+.-.|-..+...++.||+.|||+..|++|.+.. +..++..+|..+|-+ .+..|...-.+.+.+|+.||....|+.+
T Consensus 734 ~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~r~~~ 812 (1463)
T COG5022 734 AALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR-RLVDYELKWRLFIKLQPLLSLLGSRKEY 812 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hhcccchHHHhHHHhhHHhHHHhhHHHH
Confidence 34445555556677777777777777777665433 223333333333333 2222333344566777777777776666
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000453 788 RLRKRTKAAIIAQ-AQWRCHQAYSY--YKKLQRAIIVSQCGWRCRVARRELRKLKM 840 (1491)
Q Consensus 788 ~~~~~~~aAi~IQ-~~~R~~~~r~~--y~~~~~a~i~iQ~~~R~~~ark~l~~lk~ 840 (1491)
+... .....+| ..++....+.. -....++.+.+|+.||...+++.+..++.
T Consensus 813 ~~~~--~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k 866 (1463)
T COG5022 813 RSYL--ACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKK 866 (1463)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Confidence 5443 3334455 44444444442 33444677777777777777766665553
No 28
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.42 E-value=1.5e-06 Score=111.06 Aligned_cols=86 Identities=35% Similarity=0.451 Sum_probs=80.5
Q ss_pred HHHHHHHhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000453 745 EAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQC 824 (1491)
Q Consensus 745 ~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~aAi~IQ~~~R~~~~r~~y~~~~~a~i~iQ~ 824 (1491)
..+++.||+.+|+|..|+.|.++|.+++.||+.+||+++|+ ... +..||+.||+.||++..|+.|...+.+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999999999999999 223 778999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 000453 825 GWRCRVARR 833 (1491)
Q Consensus 825 ~~R~~~ark 833 (1491)
..|++.+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999988
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.42 E-value=5.3e-07 Score=114.78 Aligned_cols=119 Identities=23% Similarity=0.297 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHhHhHHHHHHHHhhHH
Q 000453 695 VLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLR--------REAAALKIQTNFRAYVAQRSYLT 766 (1491)
Q Consensus 695 ~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~IQa~~Rg~laRk~~~~~r--------~~~AAi~IQ~~~Rg~~~Rr~y~~ 766 (1491)
....++..||+++|+|+.|+.|+.++.-++.||+.+||+..|+.|..+- --.++.++|+.+|||..|+....
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 3457889999999999999999999999999999999999999997653 11244455555555555554444
Q ss_pred HHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 767 VRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYK 813 (1491)
Q Consensus 767 ~r~a~i~IQs~~Rg~~aRr~~~~~~~~~aAi~IQ~~~R~~~~r~~y~ 813 (1491)
.-.+++.||...|-+..-++.-..+..+|+++||+.+|.+.++..|+
T Consensus 888 ~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyr 934 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYR 934 (975)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 44444445555444443333333333444444444444444444443
No 30
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.11 E-value=8.4e-06 Score=104.19 Aligned_cols=116 Identities=24% Similarity=0.324 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHhhHHH----------HHhHHHHHHhhhHHHHHHHHHHH
Q 000453 721 NAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTV----------RSSAMILQTGLRAMVARNEFRLR 790 (1491)
Q Consensus 721 ~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~~~Rr~y~~~----------r~a~i~IQs~~Rg~~aRr~~~~~ 790 (1491)
.++..||..+|||..|+.+-.+| .-++.||+.+|||..|+.|+++ ..++..+|..+||+..|+.....
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr--~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTR--QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccC--CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 57888999999999999998888 5678999999999999998864 23466788999999888765443
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000453 791 KRTKAAIIAQAQWRCHQAY--SYYKKLQRAIIVSQCGWRCRVARRELRKLKM 840 (1491)
Q Consensus 791 ~~~~aAi~IQ~~~R~~~~r--~~y~~~~~a~i~iQ~~~R~~~ark~l~~lk~ 840 (1491)
+.||+.||..+|-|+.- ..|.++.++++.||+.+|-+.++..++++..
T Consensus 889 --~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 889 --ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34889999999999877 7788999999999999999999977776654
No 31
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.71 E-value=0.035 Score=69.96 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHH
Q 000453 1279 LIAHWQSIVKSLNNYLKIMRANYVPSFL 1306 (1491)
Q Consensus 1279 ~~~~~~~il~~L~~~~~~L~~~~V~~~l 1306 (1491)
|..++...+..+++.+..+....++++.
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey 924 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEY 924 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4557788888888888888877765544
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.68 E-value=0.0092 Score=74.91 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q 000453 952 SQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQD-----------------SVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 952 ~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~e-----------------el~~Leeki~~Le~E~~~Lk 1010 (1491)
.+.++++....++.+++..++.+.+++..+|..+.++++ ..-+||+++..|+++...|+
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443 33356667777777665554
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.01 Score=73.36 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=6.4
Q ss_pred HHHHHhcCcc
Q 000453 1403 LYRISTMYWD 1412 (1491)
Q Consensus 1403 l~kiL~~Y~~ 1412 (1491)
+.+++.||.+
T Consensus 1053 v~qviamYdY 1062 (1118)
T KOG1029|consen 1053 VCQVIAMYDY 1062 (1118)
T ss_pred cceeEEeecc
Confidence 5556677765
No 34
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.40 E-value=1.6 Score=61.64 Aligned_cols=6 Identities=17% Similarity=0.551 Sum_probs=2.5
Q ss_pred hhhHHH
Q 000453 1143 SYWLSN 1148 (1491)
Q Consensus 1143 ~fWLSN 1148 (1491)
.|||+|
T Consensus 617 ~~~lg~ 622 (1164)
T TIGR02169 617 KYVFGD 622 (1164)
T ss_pred HHHCCC
Confidence 334444
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=1.1 Score=59.20 Aligned_cols=47 Identities=32% Similarity=0.310 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHHHhhcCCCccCHHHHHhccC---CCCCHHHHHHHHhcCccC
Q 000453 1364 WDELRHIRQAVGFLVIHQKPKKTLKEITNDLC---PVLSIQQLYRISTMYWDD 1413 (1491)
Q Consensus 1364 ~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C---~~Ls~~Ql~kiL~~Y~~d 1413 (1491)
.+.|.|..+-+.|-+.| ++.+|..| ..+- -.||+.=|.=.|.+|+|.
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I-~NLSGGEKTLSSLALVFALH~YkPT 1218 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNI-SNLSGGEKTLSSLALVFALHHYKPT 1218 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhc-ccCCcchhHHHHHHHHHHHHccCCC
Confidence 34555555555555555 45555554 1221 256666666666666653
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.31 E-value=0.28 Score=64.54 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=7.9
Q ss_pred HhhhcccChhHHHHhh
Q 000453 609 IQQLRCGGVLEAIRIS 624 (1491)
Q Consensus 609 ~~QLr~~gvle~iri~ 624 (1491)
..|-.-.|.++.|++.
T Consensus 33 ~~~~~~sG~I~sI~L~ 48 (1074)
T KOG0250|consen 33 TLQRAESGKIESIHLT 48 (1074)
T ss_pred hhhhhhcceEEEEEEe
Confidence 3444444555555544
No 37
>PRK11637 AmiB activator; Provisional
Probab=97.31 E-value=0.054 Score=67.38 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKK-------LKDAEKRVDELQDSVQRLAEKVSNLESENQ 1007 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~e-------l~~le~~~~~L~eel~~Leeki~~Le~E~~ 1007 (1491)
.++++......|.....+++.+..+++....+++....+++.+ +..++.+....+.++..++.....|+....
T Consensus 171 ~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 171 TIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333333333 333444444444444444444444444444
Q ss_pred HH
Q 000453 1008 VL 1009 (1491)
Q Consensus 1008 ~L 1009 (1491)
.+
T Consensus 251 ~l 252 (428)
T PRK11637 251 RA 252 (428)
T ss_pred HH
Confidence 33
No 38
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=97.14 E-value=0.0046 Score=75.93 Aligned_cols=58 Identities=28% Similarity=0.428 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHHHHH
Q 000453 720 RNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEF 787 (1491)
Q Consensus 720 r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~ 787 (1491)
..-++.||+.|||+++|.+|+++| +++++|+ +||.|. ++..+..||..+||+..++.|
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmk--a~~~ii~-wyR~~K-------~ks~v~el~~~~rg~k~~r~y 753 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMK--ASATIIR-WYRRYK-------LKSYVQELQRRFRGAKQMRDY 753 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHH-------HHHHHHHHHHHHHhhhhcccc
Confidence 344556666666666666666655 4445555 555332 333444556666666555554
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.12 E-value=1.3 Score=58.73 Aligned_cols=75 Identities=19% Similarity=0.350 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
.++..+..+.+.+++.|+.+++.++..+..++.+.++..+++...+.+....+.++..+..++.....+++.|+.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555555555555666666666666666666666666666666666653
No 40
>PRK11637 AmiB activator; Provisional
Probab=97.10 E-value=0.15 Score=63.48 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 974 LTKKLKDAEKRVDELQDSVQRLAEKVSNL 1002 (1491)
Q Consensus 974 l~~el~~le~~~~~L~eel~~Leeki~~L 1002 (1491)
+.++....+.++.+++.+...++..|..+
T Consensus 224 L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 224 LESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444433
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.09 E-value=0.12 Score=67.24 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 843 RETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEA 879 (1491)
Q Consensus 843 ~e~~~l~~~~~~le~k~~el~~~L~~e~~~~~~lee~ 879 (1491)
.++..++.....|++++..|....+.++.....+|..
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666665555555444443444333
No 42
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.04 E-value=3.4 Score=58.19 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=6.2
Q ss_pred HHHhchHHHHHHHhh
Q 000453 1340 FVKAGLAELEQWCHD 1354 (1491)
Q Consensus 1340 qIr~nls~LE~W~~~ 1354 (1491)
.++-.+..++.=+..
T Consensus 946 ~~~~~i~~le~~i~~ 960 (1163)
T COG1196 946 ELEREIERLEEEIEA 960 (1163)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444333
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.02 E-value=0.9 Score=64.05 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 974 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 974 l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
++..+...+.++.+++.++.+++.++..++.+.+.+++
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555544443
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.76 Score=59.67 Aligned_cols=31 Identities=23% Similarity=0.569 Sum_probs=22.6
Q ss_pred cCCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcC
Q 000453 86 FGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 139 (1491)
Q Consensus 86 ~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~ 139 (1491)
..+.+||--| |+|=.|||||-. +.-+|++=|
T Consensus 20 I~~fDp~FNA-------------------ITGlNGSGKSNI----LDsICFvLG 50 (1174)
T KOG0933|consen 20 ISGFDPQFNA-------------------ITGLNGSGKSNI----LDSICFVLG 50 (1174)
T ss_pred ccCCCcccch-------------------hhcCCCCCchHH----HHHHHHHHc
Confidence 4678888777 899999999964 455555433
No 45
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.92 E-value=0.0004 Score=91.69 Aligned_cols=268 Identities=16% Similarity=0.097 Sum_probs=165.7
Q ss_pred hhHHHHHHHHHHHHHHhccCCeEEEecCCCCCCCCCCCcch-hhHhhhcccChhHHHHhhhccCCcccchHHHHHhhccc
Q 000453 566 IGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENF-NVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 644 (1491)
Q Consensus 566 v~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~-~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l 644 (1491)
++..++-++.+....|.+..+||.|||+||+.-.+..++.. .+..++...|..++....+.|+..+..|.+++++++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 44555567778888888899999999999999999999987 89999999999999999999999999999998877643
Q ss_pred ccCcccCCCchHHHHHHHHHHcCCCCeeeccceeecccchhhHHhHHHHhhhh--------------------------H
Q 000453 645 APEVLEGNYDDQVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVLG--------------------------N 698 (1491)
Q Consensus 645 ~~~~~~~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l~--------------------------~ 698 (1491)
.-.......-.+.+|..++.+-+.+.+..++++++.+...-..+.-.+.+... .
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~ 803 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLE 803 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccch
Confidence 32111111112456677777777778888888888765432222211111111 2
Q ss_pred HHHHHHHHHhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHH----------------------------------
Q 000453 699 AARKIQRQTRTYIARKEFILL----RNAAVILQSFLRGEMARKLYE---------------------------------- 740 (1491)
Q Consensus 699 aa~~IQ~~~R~~~~Rk~~~~~----r~aai~IQa~~Rg~laRk~~~---------------------------------- 740 (1491)
.+..+|+-++....+..+... -...+.+|.-|=|...+...+
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~ 883 (1062)
T KOG4229|consen 804 SYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFS 883 (1062)
T ss_pred hhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhee
Confidence 233444444443333332111 123444444444322211110
Q ss_pred ----------------------------HHhHHHH---HHHHhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHHHHHH-
Q 000453 741 ----------------------------QLRREAA---ALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFR- 788 (1491)
Q Consensus 741 ----------------------------~~r~~~A---Ai~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~- 788 (1491)
.+.++.. +...|++++.-..++.+.++..+.+.+| ++++..|+...
T Consensus 884 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~ 961 (1062)
T KOG4229|consen 884 TLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPV 961 (1062)
T ss_pred ecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcc
Confidence 0001111 2345666666666667777777777777 66666555333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000453 789 LRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARREL 835 (1491)
Q Consensus 789 ~~~~~~aAi~IQ~~~R~~~~r~~y~~~~~a~i~iQ~~~R~~~ark~l 835 (1491)
......+++-+|..|+.+..+..+...++..+.+|..++...-+..+
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 962 AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 22334566677778888877777777777777777777765554443
No 46
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.90 E-value=0.17 Score=52.80 Aligned_cols=128 Identities=20% Similarity=0.314 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc
Q 000453 848 LQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETP 927 (1491)
Q Consensus 848 l~~~~~~le~k~~el~~~L~~e~~~~~~lee~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~e~~ 927 (1491)
+......++.++.++..+.. .+..++..|+..+..++.+++.++..+......+.....
T Consensus 12 a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~---------- 70 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK---------- 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------
Confidence 33444445555555544444 234566667777777777777666666433222211100
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 928 VIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1007 (1491)
Q Consensus 928 ~l~~~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~ 1007 (1491)
....++.|...+..|+++++.....+.+...++.++.... ...++++..+..+...++.++..|.....
T Consensus 71 ----~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a-------e~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 71 ----RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA-------EHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred ----HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1112224444444444444444444444444444444444 44455555555555555555555544433
No 47
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.86 E-value=0.2 Score=54.79 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000453 941 AEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA---EKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 941 ~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Le---eki~~Le~E~~~Lkq~ 1012 (1491)
+..+.|++-|.+|++.++.++..-....-..+++++++..+-.++.-|+.++.+-+ +.++.|++|-..|+|.
T Consensus 105 aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 105 AIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444332222222334566666665555555655554433 3455666666666665
No 48
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.85 E-value=0.021 Score=75.89 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=46.2
Q ss_pred HhHhHHHHHHHHhhHHHH-------HhHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 000453 751 IQTNFRAYVAQRSYLTVR-------SSAMILQTGLRAMVA--RNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKL------ 815 (1491)
Q Consensus 751 IQ~~~Rg~~~Rr~y~~~r-------~a~i~IQs~~Rg~~a--Rr~~~~~~~~~aAi~IQ~~~R~~~~r~~y~~~------ 815 (1491)
+|+..||+..|..+.... -.+..||+.|||++. -+.-...-...-++.+|++.||++.|+.|.+.
T Consensus 541 ~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~ 620 (1401)
T KOG2128|consen 541 IQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKD 620 (1401)
T ss_pred hhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 355556555554433221 124455666666552 11111112233445566666666666554433
Q ss_pred -HHHHHHHHhhHHHHHHHHHHHHHHH
Q 000453 816 -QRAIIVSQCGWRCRVARRELRKLKM 840 (1491)
Q Consensus 816 -~~a~i~iQ~~~R~~~ark~l~~lk~ 840 (1491)
..+++.+|+++|....|+.++.+..
T Consensus 621 ~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 621 NMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred hhhhHHHHHHHHHhcccchHHHHHhc
Confidence 2466677777777777777666543
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.85 E-value=0.13 Score=66.75 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 946 LKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1006 (1491)
Q Consensus 946 Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~ 1006 (1491)
|-..+..+.++...||..+...-..+.+|-..+-+++++++-++..+..-+.+|.+|+...
T Consensus 592 L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555544444444444555555555555555555555555555544433
No 50
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.31 Score=62.98 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQT 956 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~e 956 (1491)
++.+|+.++..++..+++...+
T Consensus 788 rlkdl~keik~~k~~~e~~~~~ 809 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKE 809 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333
No 51
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.82 E-value=0.022 Score=75.64 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=83.4
Q ss_pred HHHHHhhHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHHH----h-HHHHHHHHhHhHHHHHH----HHhhHHHH
Q 000453 703 IQRQTRTYIARKEFIL-----LRNAAVILQSFLRGEMARKLYEQL----R-REAAALKIQTNFRAYVA----QRSYLTVR 768 (1491)
Q Consensus 703 IQ~~~R~~~~Rk~~~~-----~r~aai~IQa~~Rg~laRk~~~~~----r-~~~AAi~IQ~~~Rg~~~----Rr~y~~~r 768 (1491)
.|.-+|+...|..--. -..-...+|+..||+..|-.++.. + ..-....||..|||++. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 6777888877764211 122334459999999998877653 2 34567889999999984 11223345
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 769 SSAMILQTGLRAMVARNEFRLRKR-----TKAAIIAQAQWRCHQAYSYYKKLQ 816 (1491)
Q Consensus 769 ~a~i~IQs~~Rg~~aRr~~~~~~~-----~~aAi~IQ~~~R~~~~r~~y~~~~ 816 (1491)
..++.+|+..||+++|+.+.++.+ ..+.+.||++.|....|..|..+.
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 568899999999999998865433 457789999999999999998876
No 52
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.82 E-value=0.0013 Score=44.94 Aligned_cols=19 Identities=42% Similarity=0.781 Sum_probs=11.1
Q ss_pred HHHHHHhHhHHHHHHHHhh
Q 000453 746 AAALKIQTNFRAYVAQRSY 764 (1491)
Q Consensus 746 ~AAi~IQ~~~Rg~~~Rr~y 764 (1491)
.||++||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3555666666666666555
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=2.5 Score=53.43 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000453 887 LQEALHAMQLRVDDANSLV 905 (1491)
Q Consensus 887 L~~~l~~l~~~l~~~~~~l 905 (1491)
+.+....++.+++.++.++
T Consensus 435 ~nak~~ql~~eletLn~k~ 453 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKL 453 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 54
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.78 E-value=0.9 Score=64.17 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.5
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 000453 112 SILVSGESGAGKTETTKML 130 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~ 130 (1491)
..+|.|++|||||.....|
T Consensus 25 ~~~i~G~NGsGKS~ll~ai 43 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAI 43 (1179)
T ss_pred cEEEECCCCCChhHHHHHH
Confidence 6789999999999865443
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.76 E-value=0.27 Score=58.86 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000453 932 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA----EKVSNLESENQ 1007 (1491)
Q Consensus 932 ~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Le----eki~~Le~E~~ 1007 (1491)
+..++..++.++..+..+++..++++.+++.++.+++...+++..+..+++.++.+++...+.-+ .++..|+.+.+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 44556666666666666666666666666665555555555444444444444444443333221 25666666666
Q ss_pred HHHHH
Q 000453 1008 VLRQQ 1012 (1491)
Q Consensus 1008 ~Lkq~ 1012 (1491)
.|+..
T Consensus 287 ~Le~~ 291 (325)
T PF08317_consen 287 ALEKL 291 (325)
T ss_pred HHHHH
Confidence 66653
No 56
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.63 E-value=0.0022 Score=43.74 Aligned_cols=19 Identities=58% Similarity=0.913 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 000453 721 NAAVILQSFLRGEMARKLY 739 (1491)
Q Consensus 721 ~aai~IQa~~Rg~laRk~~ 739 (1491)
+|++.||++|||+++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555544
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.57 E-value=7 Score=55.21 Aligned_cols=27 Identities=11% Similarity=0.243 Sum_probs=15.4
Q ss_pred HHhcCccCCCCCCCCCHH-HHHHHHhhhh
Q 000453 1406 ISTMYWDDKYGTHSVSSE-VISSMRVMMM 1433 (1491)
Q Consensus 1406 iL~~Y~~d~~e~~~vs~~-~i~~v~~~~~ 1433 (1491)
....|...+.. ..||++ ++..|+..+.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 44455333333 357777 8888776644
No 58
>PRK09039 hypothetical protein; Validated
Probab=96.53 E-value=0.3 Score=58.68 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1000 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~ 1000 (1491)
....+..+...++....+...++..++.+++.++.....++..+..++.+..+.+.++++++.++.
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443333344444444444444444444333
No 59
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.52 E-value=2.6 Score=55.00 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhC
Q 000453 843 RETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLV---IKEREAARKAIKEA 919 (1491)
Q Consensus 843 ~e~~~l~~~~~~le~k~~el~~~L~~e~~~~~~lee~~~~e~~~L~~~l~~l~~~l~~~~~~l---~~e~~~~~~~~ee~ 919 (1491)
++-.++......++.++..|++++++......++ +.|+..++.++..+..+..+..... ...+.++....+.+
T Consensus 170 ~~~~hL~velAdle~kir~LrqElEEK~enll~l----r~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~a 245 (1195)
T KOG4643|consen 170 KKNLHLEVELADLEKKIRTLRQELEEKFENLLRL----RNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQA 245 (1195)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Confidence 3445666666777777777777776443333322 3344444444444444443332221 11222232222222
Q ss_pred CccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 920 PPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN--GELTKKLKDAEKRVDELQDSVQRLAE 997 (1491)
Q Consensus 920 ~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~--~~l~~el~~le~~~~~L~eel~~Lee 997 (1491)
+..- +...+......-+.+..++|++.-..|.++.+.++.+++.++.+. ..++.++-.+++++..++.+..-...
T Consensus 246 er~d---~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~ 322 (1195)
T KOG4643|consen 246 ERPD---TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRH 322 (1195)
T ss_pred hcCC---CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHH
Confidence 2111 111112233334556666666666666667777777777776666 45666666677777777776666666
Q ss_pred HHHHHHHHHHHHHHH
Q 000453 998 KVSNLESENQVLRQQ 1012 (1491)
Q Consensus 998 ki~~Le~E~~~Lkq~ 1012 (1491)
++.+|..||..|.-+
T Consensus 323 kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 323 KTEELHEENSTLQVQ 337 (1195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666543
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.42 E-value=0.55 Score=58.46 Aligned_cols=76 Identities=24% Similarity=0.333 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTV-----------SEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNL 1002 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~e-----------le~~~~~l~~el~~le~~~~~L~eel~~Leeki~~L 1002 (1491)
.++.+|..++..+++.+.+...+...++.++.+ ...+..++.+.++-++.+..++.++.++|-+-|..|
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L 450 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL 450 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444333333333333332 222233333334444444444444444444444444
Q ss_pred HHHHHHH
Q 000453 1003 ESENQVL 1009 (1491)
Q Consensus 1003 e~E~~~L 1009 (1491)
+.....+
T Consensus 451 e~r~~~~ 457 (546)
T PF07888_consen 451 EQRLDKV 457 (546)
T ss_pred HHHHHHh
Confidence 4444433
No 61
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.38 E-value=2.4 Score=53.36 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 754 NFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQR 817 (1491)
Q Consensus 754 ~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~aAi~IQ~~~R~~~~r~~y~~~~~ 817 (1491)
.+--|+.+.+|++..-++..+ ..-+. +...+..+.+++|++.|||++|+++++...
T Consensus 782 kVn~WLv~sRWkk~q~~a~sV------IKLkN--kI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 782 KVNKWLVRSRWKKSQYGALSV------IKLKN--KIIYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHhHHHHhhhhhhhe------eehhh--HHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 345678888777654332111 00011 112233567788999999999988766543
No 62
>PRK09039 hypothetical protein; Validated
Probab=96.38 E-value=0.32 Score=58.40 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000453 850 EAKNKLEKRVEELTWRLQIEK 870 (1491)
Q Consensus 850 ~~~~~le~k~~el~~~L~~e~ 870 (1491)
+....++.++.++-.-+..+.
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~ 73 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLER 73 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555544444333
No 63
>PRK02224 chromosome segregation protein; Provisional
Probab=96.33 E-value=4.7 Score=55.26 Aligned_cols=11 Identities=18% Similarity=0.592 Sum_probs=6.9
Q ss_pred eeecccchhhH
Q 000453 677 KVFLRAGQMAE 687 (1491)
Q Consensus 677 kVFlr~~~~~~ 687 (1491)
-||++.|.+..
T Consensus 132 ~~~i~Qge~~~ 142 (880)
T PRK02224 132 CAYVRQGEVNK 142 (880)
T ss_pred eeEeeccChHH
Confidence 36777776643
No 64
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.33 E-value=0.55 Score=60.72 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLLQ 951 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei~ 951 (1491)
..|..+...++.++.
T Consensus 302 ~~l~d~i~~l~~~l~ 316 (562)
T PHA02562 302 TKIKDKLKELQHSLE 316 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 65
>PRK02224 chromosome segregation protein; Provisional
Probab=96.32 E-value=1.8 Score=59.25 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 000453 997 EKVSNLESENQVLR 1010 (1491)
Q Consensus 997 eki~~Le~E~~~Lk 1010 (1491)
+.+..++.+...++
T Consensus 412 ~~l~~l~~~~~~l~ 425 (880)
T PRK02224 412 DFLEELREERDELR 425 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.29 E-value=0.88 Score=51.20 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKR 984 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~ 984 (1491)
..+...|..+...+++...+++.++.++..++.+++.....+..++..++..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444444444444444333333
No 67
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.27 E-value=0.0031 Score=74.69 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=44.4
Q ss_pred EeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHH
Q 000453 62 AVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETT 127 (1491)
Q Consensus 62 avNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~ 127 (1491)
++|||...| |+..+-..++. +.+||-|-+ -+.-|..-..||+||++||.|||||+-.
T Consensus 23 ~~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 23 AINPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 399999987 88776666543 456776654 3667777789999999999999999754
No 68
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.23 E-value=0.42 Score=54.50 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADE 959 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~e 959 (1491)
..++.++..+..|+.++......+..
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333333
No 69
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.23 E-value=0.19 Score=53.76 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 939 L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
+..|++.|+..+.++++....+-.+...++++...+..++..++.+...+..+.+.+..++.+|..++..|+.+
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 34444444444444444444444444444555555555555666666666666666666666666666666554
No 70
>PRK03918 chromosome segregation protein; Provisional
Probab=96.21 E-value=0.74 Score=62.98 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=14.7
Q ss_pred EEEcCCCCCChhHHHHHH
Q 000453 113 ILVSGESGAGKTETTKML 130 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~ 130 (1491)
.+|+|++|||||+....|
T Consensus 26 ~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAI 43 (880)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 459999999999877644
No 71
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.19 E-value=0.83 Score=56.95 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=8.5
Q ss_pred HHhhhccCCcccchHHH
Q 000453 621 IRISCAGYPTRRTFYEF 637 (1491)
Q Consensus 621 iri~~~Gyp~r~~~~~F 637 (1491)
|-|.+.||.+-..|-.|
T Consensus 40 IGiFKVGw~s~rdY~Tf 56 (546)
T PF07888_consen 40 IGIFKVGWSSTRDYYTF 56 (546)
T ss_pred eEEeecCCCchhheeeE
Confidence 44455566554444444
No 72
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=1.7 Score=53.76 Aligned_cols=22 Identities=14% Similarity=-0.164 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 000453 809 YSYYKKLQRAIIVSQCGWRCRV 830 (1491)
Q Consensus 809 r~~y~~~~~a~i~iQ~~~R~~~ 830 (1491)
|..|..++.-+...|...-...
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~ 286 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMK 286 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 73
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.14 E-value=1.7 Score=49.81 Aligned_cols=81 Identities=21% Similarity=0.168 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKD-----------AEKRVDELQDSVQRLAEKVSN 1001 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~-----------le~~~~~L~eel~~Leeki~~ 1001 (1491)
|+-+..+++|+..++-+++++..+..|.+++-+++..+..+...-.+. -..-++.-+.-+.+||.++.+
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 344455555666666666666555555555544444433332222211 223355666778888888888
Q ss_pred HHHHHHHHHHHH
Q 000453 1002 LESENQVLRQQA 1013 (1491)
Q Consensus 1002 Le~E~~~Lkq~~ 1013 (1491)
|--|...|-|-.
T Consensus 213 Lm~EirnLLQle 224 (401)
T PF06785_consen 213 LMYEIRNLLQLE 224 (401)
T ss_pred HHHHHHHHHHhh
Confidence 888887776643
No 74
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.11 E-value=2.1 Score=46.14 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN-------GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1006 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~-------~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~ 1006 (1491)
.++..|+.++.++..+.+.+.+...++-.+...++... -.....+.+....+.++...++....-...|..+.
T Consensus 102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~ 181 (193)
T PF14662_consen 102 AEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEK 181 (193)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444444444444433333222222 12222233344445555555555555555555555
Q ss_pred HHHHHH
Q 000453 1007 QVLRQQ 1012 (1491)
Q Consensus 1007 ~~Lkq~ 1012 (1491)
.+|.++
T Consensus 182 s~LEeq 187 (193)
T PF14662_consen 182 SRLEEQ 187 (193)
T ss_pred HHHHHH
Confidence 555544
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.06 E-value=1.2 Score=57.66 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000453 945 NLKGLLQSQTQTADEAKQA 963 (1491)
Q Consensus 945 ~Lk~ei~~l~~el~ele~~ 963 (1491)
.+..++..++.++.+++..
T Consensus 303 ~l~d~i~~l~~~l~~l~~~ 321 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDTA 321 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344433333333
No 76
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.05 E-value=12 Score=52.77 Aligned_cols=32 Identities=25% Similarity=0.120 Sum_probs=16.7
Q ss_pred HHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 000453 702 KIQRQTRTYIARKEFILLRNAAVILQSFLRGE 733 (1491)
Q Consensus 702 ~IQ~~~R~~~~Rk~~~~~r~aai~IQa~~Rg~ 733 (1491)
.|..|+|-...-..+..++..+..++..++..
T Consensus 227 ~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l 258 (1201)
T PF12128_consen 227 DIDDWLRDIRASQGFEKVRPEFDKLQQQYRQL 258 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444445555555555565555443
No 77
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.01 E-value=2.3 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 848 LQEAKNKLEKRVEELTWRLQIEKRLR 873 (1491)
Q Consensus 848 l~~~~~~le~k~~el~~~L~~e~~~~ 873 (1491)
++..++.++.+++.|+.++.+.....
T Consensus 406 leke~KnLs~k~e~Leeri~ql~qq~ 431 (1195)
T KOG4643|consen 406 LEKEHKNLSKKHEILEERINQLLQQL 431 (1195)
T ss_pred HHHHhHhHhHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555444333
No 78
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.00 E-value=2.9 Score=50.63 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 979 KDAEKRVDELQDSVQRLAEKVSNLESEN 1006 (1491)
Q Consensus 979 ~~le~~~~~L~eel~~Leeki~~Le~E~ 1006 (1491)
..-+++..+|...-..|+..|..++.+.
T Consensus 220 ~~~q~~l~eL~~~~~~L~~~Ias~e~~a 247 (420)
T COG4942 220 SADQKKLEELRANESRLKNEIASAEAAA 247 (420)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 79
>PTZ00014 myosin-A; Provisional
Probab=95.98 E-value=0.011 Score=77.91 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=30.2
Q ss_pred HHHHHHhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHHHH
Q 000453 746 AAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNE 786 (1491)
Q Consensus 746 ~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~ 786 (1491)
..+..||++||||++|++|++.+.++++||+.+||+++++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777777777777777777777777777777777653
No 80
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.90 E-value=1 Score=53.31 Aligned_cols=78 Identities=13% Similarity=0.270 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA----EKVSNLESENQVLR 1010 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Le----eki~~Le~E~~~Lk 1010 (1491)
++..++.++..+..++.....++.+++.++.+++...++...+..+++.++.+++..++.-. .++..|+...+.|+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333333333333333332222111 14555666666555
Q ss_pred HH
Q 000453 1011 QQ 1012 (1491)
Q Consensus 1011 q~ 1012 (1491)
+.
T Consensus 285 ~l 286 (312)
T smart00787 285 SL 286 (312)
T ss_pred HH
Confidence 43
No 81
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.88 E-value=0.59 Score=59.89 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 845 TGALQEAKNKLEKRVEELTWRLQIEKRL 872 (1491)
Q Consensus 845 ~~~l~~~~~~le~k~~el~~~L~~e~~~ 872 (1491)
....+......++++.++++.+++..+.
T Consensus 353 ~~ear~~~~q~~~ql~~le~~~~e~q~~ 380 (980)
T KOG0980|consen 353 KEEARRRIEQYENQLLALEGELQEQQRE 380 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344445556777777777777755543
No 82
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.83 E-value=4 Score=51.16 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 983 KRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 983 ~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
..+.....++..+.+++..|-.|.+.|-
T Consensus 342 ~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 342 QALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445556666666666666666654
No 83
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.82 E-value=1.4 Score=49.68 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAE 982 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le 982 (1491)
..+++.++.....|+.++..+..+++.++.++..++....+++..+.+++
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555544443
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.82 E-value=3.6 Score=48.94 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000453 999 VSNLESENQVL 1009 (1491)
Q Consensus 999 i~~Le~E~~~L 1009 (1491)
|..++.++..+
T Consensus 264 i~~le~el~~l 274 (312)
T PF00038_consen 264 IAELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred hhccchhHHHH
Confidence 33333333333
No 85
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.79 E-value=4.2 Score=47.66 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=5.0
Q ss_pred hhcCCCCCccc
Q 000453 1253 CIQAPRTSRAS 1263 (1491)
Q Consensus 1253 ~i~~~~~~~~~ 1263 (1491)
.|.+++...|+
T Consensus 471 aiAaedt~~~G 481 (499)
T COG4372 471 AIAAEDTVGPG 481 (499)
T ss_pred CCCCCCCcCCC
Confidence 44444444443
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.74 E-value=1 Score=52.22 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNL 1002 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~L 1002 (1491)
..++..|.+++..++..+..+..+.+++...+...+.....+..++.+++.+..+....+.+.++++..+
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666666666655555555555555555555555554444444433
No 87
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.74 E-value=1.2 Score=49.13 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000453 988 LQDSVQRLAEKVSNLESENQVL 1009 (1491)
Q Consensus 988 L~eel~~Leeki~~Le~E~~~L 1009 (1491)
+-+.+++|+++..+|..|+..-
T Consensus 162 llesvqRLkdEardlrqelavr 183 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVR 183 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555443
No 88
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.73 E-value=4 Score=47.89 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 943 VENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE 997 (1491)
Q Consensus 943 ~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Lee 997 (1491)
...+..++...-+.++....++..-.+...+.+.+++.+|.+...++.++..+|.
T Consensus 226 ~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 226 AQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443444444444444555555555555554444
No 89
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.69 E-value=13 Score=50.00 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=8.9
Q ss_pred HHHHHHHHHHcCCC
Q 000453 656 QVACQMILDKKGLK 669 (1491)
Q Consensus 656 ~~~~~~il~~~~~~ 669 (1491)
...+..+|...|+|
T Consensus 208 ~~~V~~lLk~~gID 221 (1293)
T KOG0996|consen 208 FKDVTKLLKSHGID 221 (1293)
T ss_pred HHHHHHHHHhcCCC
Confidence 44567777776654
No 90
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=2 Score=48.88 Aligned_cols=31 Identities=13% Similarity=0.317 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 882 QEIAKLQEALHAMQLRVDDANSLVIKEREAA 912 (1491)
Q Consensus 882 ~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~ 912 (1491)
.++.+++..+..++.++++++..+.+..+-+
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554433333
No 91
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.62 E-value=18 Score=51.19 Aligned_cols=9 Identities=44% Similarity=1.117 Sum_probs=3.6
Q ss_pred eeccCCCCC
Q 000453 394 LDIYGFESF 402 (1491)
Q Consensus 394 LDi~GFE~f 402 (1491)
|-+.||.+|
T Consensus 6 i~l~gFKSF 14 (1163)
T COG1196 6 IELKGFKSF 14 (1163)
T ss_pred EEEECcccC
Confidence 334444433
No 92
>PRK03918 chromosome segregation protein; Provisional
Probab=95.60 E-value=3.3 Score=56.75 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHhhh
Q 000453 1419 SVSSEVISSMRVMM 1432 (1491)
Q Consensus 1419 ~vs~~~i~~v~~~~ 1432 (1491)
++++.....+...+
T Consensus 824 ~lD~~~~~~l~~~l 837 (880)
T PRK03918 824 FLDEERRRKLVDIM 837 (880)
T ss_pred ccCHHHHHHHHHHH
Confidence 45555555544443
No 93
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.60 E-value=3.1 Score=52.66 Aligned_cols=51 Identities=25% Similarity=0.308 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 946 LKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA 996 (1491)
Q Consensus 946 Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Le 996 (1491)
++++...++.-.+++++.+.+++..+.-+..++.+.+..++.++++++.++
T Consensus 254 i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 254 IEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 333433444444444444444444444444444444444444444444433
No 94
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.56 E-value=11 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000453 849 QEAKNKLEKRVEELTWRLQIEK 870 (1491)
Q Consensus 849 ~~~~~~le~k~~el~~~L~~e~ 870 (1491)
...+...+..+.+++..|+.++
T Consensus 283 ~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 283 GDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 3334445555566666665444
No 95
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.55 E-value=7.3 Score=46.35 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTK----KLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~----el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
..++.++..++..+..+..++..++.....++....+++. +....+..+..++.++..+...+.....+.+.|-
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333333333332222 2233344444445555555555444444444444
No 96
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.49 E-value=20 Score=50.85 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=4.5
Q ss_pred HHHHHHHcCC
Q 000453 659 CQMILDKKGL 668 (1491)
Q Consensus 659 ~~~il~~~~~ 668 (1491)
+..+|..+|+
T Consensus 124 ~~~~l~~~~i 133 (1179)
T TIGR02168 124 IQDLFLDTGL 133 (1179)
T ss_pred HHHHHhccCC
Confidence 3444544443
No 97
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.42 E-value=0.014 Score=42.06 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=15.4
Q ss_pred HHHHHHHhHhHHHHHHHHhhH
Q 000453 745 EAAALKIQTNFRAYVAQRSYL 765 (1491)
Q Consensus 745 ~~AAi~IQ~~~Rg~~~Rr~y~ 765 (1491)
..+|+.||++||||++|+.|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 357777888888888777763
No 98
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.40 E-value=5 Score=47.23 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhh---HHHHHHHHHHHHHHHHHHHHHHH
Q 000453 879 AKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQD---TEKINSLTAEVENLKGLLQSQTQ 955 (1491)
Q Consensus 879 ~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~e~~~l~~~---e~~~~~L~~e~~~Lk~ei~~l~~ 955 (1491)
..+..+..|+.+++++...+.+++....-.++..+...-.... ........+. -.+++.++.++..|+.++.++..
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~-~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEG-IGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666654444433322111100 0000000111 23334444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 956 TADEAKQAFTVSEAKNGELTKKLKDAE-------KRVDELQDSVQRLAEKVSNLESENQVLRQQA 1013 (1491)
Q Consensus 956 el~ele~~~~ele~~~~~l~~el~~le-------~~~~~L~eel~~Leeki~~Le~E~~~Lkq~~ 1013 (1491)
+.+++..+....+...+.+..++.-+= -.++.|-.|..-|.+++..++.|..-+++..
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544444444444442211 1266666777777788888888877777643
No 99
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.40 E-value=1.3 Score=62.94 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=17.1
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLM 131 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~ 131 (1491)
...+|+|++|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 366899999999998776654
No 100
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.36 E-value=6.2 Score=45.00 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000453 979 KDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 1014 (1491)
Q Consensus 979 ~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~~~ 1014 (1491)
..+.+++....+.++.++++|..|+.|++.|..++.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777888888888888999999888887764
No 101
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.32 E-value=4.9 Score=57.32 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.7
Q ss_pred hhcCCCH
Q 000453 268 DIVGISD 274 (1491)
Q Consensus 268 ~~lG~~~ 274 (1491)
..+|++.
T Consensus 141 ~~lGv~~ 147 (1311)
T TIGR00606 141 SHLGVSK 147 (1311)
T ss_pred HHhCCCH
Confidence 3456654
No 102
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.26 E-value=2.6 Score=43.46 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 980 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 980 ~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
..+.+...++.++..++.++.+|..+|+-|-++
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667778888888888888888877665
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.24 E-value=10 Score=46.11 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 983 KRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 983 ~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
.++...+..+++|..+-..|..+...++
T Consensus 217 ~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 217 SELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333333333444444444444
No 104
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.20 E-value=1.7 Score=45.04 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 955 QTADEAKQAFTVSEAKNGELTKKLKDAE 982 (1491)
Q Consensus 955 ~el~ele~~~~ele~~~~~l~~el~~le 982 (1491)
+.+++.+.++.+++..+.++..-+..++
T Consensus 87 k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 87 KELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 105
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=3.5 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 883 EIAKLQEALHAMQLRVDDANSLVIK 907 (1491)
Q Consensus 883 e~~~L~~~l~~l~~~l~~~~~~l~~ 907 (1491)
++..|+.++++++.+.+.++.++..
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldq 68 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQ 68 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554444444444433
No 106
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.14 E-value=1.6 Score=56.04 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 970 KNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 970 ~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
+......+++.++.+++.+..++..-++...+|+.+++.+.++
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3334455566666666667777776666677776666655543
No 107
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.11 E-value=6.1 Score=47.34 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=4.2
Q ss_pred cchHHHHH
Q 000453 632 RTFYEFVN 639 (1491)
Q Consensus 632 ~~~~~F~~ 639 (1491)
++..+|+.
T Consensus 14 isL~~FL~ 21 (325)
T PF08317_consen 14 ISLQDFLN 21 (325)
T ss_pred cCHHHHHH
Confidence 45555554
No 108
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.06 E-value=16 Score=47.37 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1006 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~ 1006 (1491)
.+|+....+|+..+-.+..+.-++...++..+-.+.++..++.+++.++..+.+.++.-...+..|+.+.
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~ 232 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR 232 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444444443333333333334444433444444444555555555555444444444444444443
No 109
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.04 E-value=19 Score=48.01 Aligned_cols=57 Identities=26% Similarity=0.393 Sum_probs=34.2
Q ss_pred ccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHhhcCCccccccc-eeEEeCCCCCCCCCCCHHHHHHhh
Q 000453 12 KVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGN-ILIAVNPFQRLPHLYDTHMMEQYK 82 (1491)
Q Consensus 12 ~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~-~LiavNP~~~l~~ly~~~~~~~y~ 82 (1491)
.-||.-+..++...+|..- ..||..-.+-| -|. |+=++-|--.+++-|++++.+.-+
T Consensus 172 asFPGv~~~~~kk~~DviC-------------tSrYS~~~Pst-gGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 172 ATFPGVPTGPPKKWDDVIC-------------TSRYSDPEPST-GGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred cCCCCCCCCCcccccceee-------------ecccCCCCCCC-CCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 3445555555555555532 23565555533 344 556777877888889888876654
No 110
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.03 E-value=3.4 Score=49.55 Aligned_cols=23 Identities=4% Similarity=-0.142 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 000453 809 YSYYKKLQRAIIVSQCGWRCRVA 831 (1491)
Q Consensus 809 r~~y~~~~~a~i~iQ~~~R~~~a 831 (1491)
+.+|+.+.......|+...+...
T Consensus 301 ~ek~r~l~~D~nk~~~~~~~mk~ 323 (622)
T COG5185 301 REKWRALKSDSNKYENYVNAMKQ 323 (622)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455555555666665555433
No 111
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.01 E-value=4.8 Score=51.77 Aligned_cols=17 Identities=41% Similarity=0.810 Sum_probs=11.7
Q ss_pred ecccceeeeccchhhhcch
Q 000453 510 HYAGEVTYQANHFLDKNKD 528 (1491)
Q Consensus 510 Hyag~V~Y~~~gfl~kN~d 528 (1491)
+|.|++-|+. ||=-|-.
T Consensus 79 Gy~~digyq~--fLYp~e~ 95 (594)
T PF05667_consen 79 GYRGDIGYQT--FLYPNEK 95 (594)
T ss_pred CCCCCCcchh--hccCChH
Confidence 5889999974 6655543
No 112
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.90 E-value=0.025 Score=40.84 Aligned_cols=20 Identities=50% Similarity=0.715 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 000453 720 RNAAVILQSFLRGEMARKLY 739 (1491)
Q Consensus 720 r~aai~IQa~~Rg~laRk~~ 739 (1491)
.++++.||++|||+++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777766
No 113
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.89 E-value=18 Score=47.13 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=4.8
Q ss_pred CCCCCHHHHH
Q 000453 1395 CPVLSIQQLY 1404 (1491)
Q Consensus 1395 C~~Ls~~Ql~ 1404 (1491)
++.||+.||+
T Consensus 934 FS~ls~h~~K 943 (980)
T KOG0980|consen 934 FSSLSLHQLK 943 (980)
T ss_pred cccccHHHHH
Confidence 3455555544
No 114
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.86 E-value=3.2 Score=47.68 Aligned_cols=37 Identities=35% Similarity=0.524 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 975 TKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 975 ~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
..++...++.-+.+.++++.|++-+..|+...+.++-
T Consensus 258 RAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 258 RAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 3334455666667778888888888888888777653
No 115
>PRK01156 chromosome segregation protein; Provisional
Probab=94.85 E-value=25 Score=48.44 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhcCCCH
Q 000453 1285 SIVKSLNNYLKIMRANYVPS 1304 (1491)
Q Consensus 1285 ~il~~L~~~~~~L~~~~V~~ 1304 (1491)
..+..|+.+...+...+++.
T Consensus 733 ~~~~~l~~~r~~l~k~~~~~ 752 (895)
T PRK01156 733 KAIGDLKRLREAFDKSGVPA 752 (895)
T ss_pred HHHHHHHHHHHHhhhccchH
Confidence 34455555666666655555
No 116
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.79 E-value=31 Score=49.35 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=5.6
Q ss_pred cCCcccchHHHH
Q 000453 627 GYPTRRTFYEFV 638 (1491)
Q Consensus 627 Gyp~r~~~~~F~ 638 (1491)
|.|.++...+|+
T Consensus 125 ~~~~~v~~~d~l 136 (1486)
T PRK04863 125 GLPDSVQPTDLL 136 (1486)
T ss_pred cCccccChHHHH
Confidence 344444444444
No 117
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.78 E-value=3.3 Score=51.34 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000453 841 AARETGALQEAKNKLEKRVE 860 (1491)
Q Consensus 841 ~a~e~~~l~~~~~~le~k~~ 860 (1491)
-+.++..++..+..+++++.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMIN 252 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666656655555
No 118
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.78 E-value=31 Score=49.22 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Q 000453 853 NKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIK 924 (1491)
Q Consensus 853 ~~le~k~~el~~~L~~e~~~~~~lee~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~ 924 (1491)
..+..+...++..+.........+++.......+++.++.+|...+..+...++++....+.........+.
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~ 840 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLE 840 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 334444444444444333344444444445555666777777777777777766665555555544443333
No 119
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.75 E-value=8.7 Score=50.67 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 968 EAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1009 (1491)
Q Consensus 968 e~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~L 1009 (1491)
....+++.+++..++.++..++.++..+++++..++.+..++
T Consensus 427 ~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 427 LEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444433
No 120
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.74 E-value=8.3 Score=42.51 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLLQSQTQTADEAKQ 962 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei~~l~~el~ele~ 962 (1491)
++|..+...++..+++...++..++.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 121
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.72 E-value=16 Score=46.16 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 000453 973 ELTKKLKDAEKRVDELQDSVQRLAEKVS------NLESENQVLRQQ 1012 (1491)
Q Consensus 973 ~l~~el~~le~~~~~L~eel~~Leeki~------~Le~E~~~Lkq~ 1012 (1491)
....++..+++++.....+++.+++++. +++.|+..|++-
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 4445555666666666666666665443 566667777653
No 122
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.71 E-value=4.9 Score=46.85 Aligned_cols=10 Identities=40% Similarity=0.601 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000453 988 LQDSVQRLAE 997 (1491)
Q Consensus 988 L~eel~~Lee 997 (1491)
|..++.++++
T Consensus 274 L~aEL~elqd 283 (306)
T PF04849_consen 274 LQAELQELQD 283 (306)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 123
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.58 E-value=6.3 Score=52.85 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEK--RVDELQDSVQRLAEKVSNLESENQVL 1009 (1491)
Q Consensus 939 L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~--~~~~L~eel~~Leeki~~Le~E~~~L 1009 (1491)
+..+...++.++.+++..++....++..++.........+.+.++ .-..++.+++.++.....+..|++.+
T Consensus 621 ~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 621 ISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555544444444443333323333333332 22333444444444555555555544
No 124
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.55 E-value=16 Score=47.39 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 980 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 980 ~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
++..++.+++.++..+++++..-..|...|.+
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444445555555555555444445555544
No 125
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.52 E-value=0.028 Score=56.65 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999976
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.44 E-value=4.1 Score=45.18 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000453 883 EIAKLQEALHAMQLRVDDANSL 904 (1491)
Q Consensus 883 e~~~L~~~l~~l~~~l~~~~~~ 904 (1491)
|+..|.+-+..++.++++++..
T Consensus 56 eN~~L~epL~~a~~e~~eL~k~ 77 (201)
T PF13851_consen 56 ENKRLSEPLKKAEEEVEELRKQ 77 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 127
>PRK01156 chromosome segregation protein; Provisional
Probab=94.38 E-value=4.8 Score=55.30 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 980 DAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 980 ~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
++..++.++..++..++.++..++.+...|+
T Consensus 413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 128
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.35 E-value=4.4 Score=42.00 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 939 L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
-++++..|+.+++.+..++..++.++..+..++..+.+.+...+.++.+|.....++...+..++.+...+.+
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e 122 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKE 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666667677777776666666666666666544444
No 129
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.22 E-value=3.1 Score=50.54 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 938 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 938 ~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
...+++.+|..++.++.+++..+..+..++..-.......-.+++.+..+++++-.+......+-++|++.|+
T Consensus 230 ~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 230 RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444444443333333333222222223333333444444444444444444555554
No 130
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=94.18 E-value=0.36 Score=57.31 Aligned_cols=132 Identities=11% Similarity=0.082 Sum_probs=73.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhc-CCCCCcchhhHHHhchHHHHHHHhhcCC
Q 000453 1279 LIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLR-RECCSFSNGEFVKAGLAELEQWCHDSTE 1357 (1491)
Q Consensus 1279 ~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~LE~W~~~~~~ 1357 (1491)
+...+.+++.+|..++... ...+|+.+..-+....|.+|+..+.+-|+.. -+..+-.--.++...+..+|.++.+...
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~ 255 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPV 255 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SS
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4567889999999988554 5689999999999999999999999998764 3445555567899999999999998711
Q ss_pred --CcccchHHHhHHHHHHHHHHhhcCCCccCHHHHHhccCCCCCHHHHHHHHhcCc
Q 000453 1358 --EFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYW 1411 (1491)
Q Consensus 1358 --~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Ql~kiL~~Y~ 1411 (1491)
...+.....|..++|.++||....-..--.-.++..-.+.++|..+..||..|+
T Consensus 256 ~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 256 PGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 124556789999999999999763222211135556688999999999988774
No 131
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.18 E-value=2.2 Score=47.00 Aligned_cols=28 Identities=25% Similarity=0.550 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 978 LKDAEKRVDELQDSVQRLAEKVSNLESE 1005 (1491)
Q Consensus 978 l~~le~~~~~L~eel~~Leeki~~Le~E 1005 (1491)
+..++....++++....+.+++.+++..
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 160 VQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 132
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.16 E-value=2.9 Score=49.72 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 983 KRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 983 ~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
..+.+.+++-...++-+.+|..++..++.-
T Consensus 360 d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 360 DILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666777777777777654
No 133
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.15 E-value=8.3 Score=41.61 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 982 EKRVDELQDSVQRLAEKVSNLESE 1005 (1491)
Q Consensus 982 e~~~~~L~eel~~Leeki~~Le~E 1005 (1491)
++.+..|+.+.++|++++.....+
T Consensus 164 ERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 164 ERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHcccHHHHHHhhHHHHHH
Confidence 333444444444444444433333
No 134
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.09 E-value=13 Score=45.02 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 000453 359 DALAKTIYSRLFDWIV 374 (1491)
Q Consensus 359 dalak~lY~~LF~wiV 374 (1491)
-+|++.+|+-|=+|+=
T Consensus 50 ~Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 50 FTLSEDIYSTLDNLLG 65 (527)
T ss_pred chhhHHHHhhhhhccC
Confidence 3678888887776643
No 135
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.01 E-value=12 Score=41.58 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKG-----LLQSQTQTADEAKQAFTVSEAKNG-------ELTKKLKDAEKRVDELQDSVQRLAEKVSN 1001 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~-----ei~~l~~el~ele~~~~ele~~~~-------~l~~el~~le~~~~~L~eel~~Leeki~~ 1001 (1491)
++...|..|+++|-. .|..|+.++...+..-++++..-+ ++...++..+..+--|+++++..+.+|..
T Consensus 217 AKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 217 AKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 344455555555443 244455555444444444444333 33333444444455555566666666666
Q ss_pred HHHHHHHHHH
Q 000453 1002 LESENQVLRQ 1011 (1491)
Q Consensus 1002 Le~E~~~Lkq 1011 (1491)
|++.+..+.+
T Consensus 297 l~k~~~q~sq 306 (330)
T KOG2991|consen 297 LKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 136
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.97 E-value=9.1 Score=48.93 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLL 950 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei 950 (1491)
..|..+..+++.++
T Consensus 340 ~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 340 SSLEAELNKTRSEL 353 (522)
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444433
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.94 E-value=0.4 Score=52.95 Aligned_cols=39 Identities=28% Similarity=0.314 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 974 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 974 l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
..+-+..+..++..|+-++..+++++..|+.||..|-+.
T Consensus 142 k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 142 KNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555556666666777777777777777777653
No 138
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.92 E-value=12 Score=42.79 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 882 QEIAKLQEALHAMQLRVDDANSLV 905 (1491)
Q Consensus 882 ~e~~~L~~~l~~l~~~l~~~~~~l 905 (1491)
.++++++.++.++...+.+.+..+
T Consensus 80 ~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 80 AEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555554
No 139
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=11 Score=48.46 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
...+.+++.+...++++++.+..........+..+......+..+....++++..+++++......+..+.+....|+.+
T Consensus 805 ~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~q 884 (970)
T KOG0946|consen 805 STRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQ 884 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence 34455566666666666666666665555555555444444555556666666666666666666666665555555544
Q ss_pred H
Q 000453 1013 A 1013 (1491)
Q Consensus 1013 ~ 1013 (1491)
+
T Consensus 885 a 885 (970)
T KOG0946|consen 885 A 885 (970)
T ss_pred h
Confidence 3
No 140
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.84 E-value=9.2 Score=50.48 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HHHHH--HHHHHHHH
Q 000453 932 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL--KDAEKRVDELQDS---VQRLA--EKVSNLES 1004 (1491)
Q Consensus 932 ~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el--~~le~~~~~L~ee---l~~Le--eki~~Le~ 1004 (1491)
....+.+|..+....+.++..+...++-.+++...++-+..-+.+++ +..|++...--.+ -+.+| .+|.+|+.
T Consensus 118 ~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEa 197 (769)
T PF05911_consen 118 KEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEA 197 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666665555554444333 2222222211111 12222 28899999
Q ss_pred HHHHHHHHHh
Q 000453 1005 ENQVLRQQAL 1014 (1491)
Q Consensus 1005 E~~~Lkq~~~ 1014 (1491)
|-++|+--+-
T Consensus 198 EC~rLr~l~r 207 (769)
T PF05911_consen 198 ECQRLRALVR 207 (769)
T ss_pred HHHHHHHHHh
Confidence 9999886433
No 141
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.77 E-value=33 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQTADEA 960 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~el~el 960 (1491)
.+.+++.++..|+....+...++...
T Consensus 624 ~~~~l~~~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 624 IIAELKEEISSLEETLKAGKKELLKV 649 (1317)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence 34455555555555555444444333
No 142
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.73 E-value=6.8 Score=48.55 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000453 990 DSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 990 eel~~Leeki~~Le~E~~~Lk 1010 (1491)
+++..++.++..++.+...++
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 143
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.70 E-value=8 Score=45.89 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 000453 991 SVQRLAEKVSNLES 1004 (1491)
Q Consensus 991 el~~Leeki~~Le~ 1004 (1491)
++..|..++..|+.
T Consensus 272 Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 272 EIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 144
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.69 E-value=3.6 Score=54.19 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=15.4
Q ss_pred hccCCeEEEecCCCCCCCCCC
Q 000453 582 NATAPHYIRCVKPNNVLKPSI 602 (1491)
Q Consensus 582 ~~t~~hfIrCIkPN~~~~~~~ 602 (1491)
..|..+||.|=+|.....|.-
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345679999999987765543
No 145
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=5.5 Score=51.08 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=12.7
Q ss_pred HHHHHHHcCCCHHHHHHHHhh
Q 000453 315 LNMTAELLRCDAQSLEDALIK 335 (1491)
Q Consensus 315 l~~~a~LLgv~~~~L~~~l~~ 335 (1491)
++.+..||.+-+-++.+++..
T Consensus 143 IqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 143 IQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 455556666666666666654
No 146
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.57 E-value=3.4 Score=51.75 Aligned_cols=20 Identities=10% Similarity=-0.127 Sum_probs=13.3
Q ss_pred CCcccchhhHHHHHHHHHHH
Q 000453 1137 DNNDRLSYWLSNASTLLLLL 1156 (1491)
Q Consensus 1137 ~d~~~l~fWLSN~~~LL~~l 1156 (1491)
.+++.--.||.-..+=|.+.
T Consensus 313 selE~~n~~L~~~I~dL~~q 332 (546)
T KOG0977|consen 313 SELESRNSALEKRIEDLEYQ 332 (546)
T ss_pred ccccccChhHHHHHHHHHhh
Confidence 56667777777766666554
No 147
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.50 E-value=37 Score=45.43 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 977 KLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 977 el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
.+++++.+..+-+..|++...++..|++++..+.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3444444444444445555555555555554444
No 148
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.44 E-value=19 Score=41.82 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQTADEAK 961 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~el~ele 961 (1491)
++.+|.++...++.+..++..++.++-
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la 185 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELA 185 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 149
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.44 E-value=11 Score=49.38 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000453 852 KNKLEKRVEELTWRLQIEK 870 (1491)
Q Consensus 852 ~~~le~k~~el~~~L~~e~ 870 (1491)
+..++-++.+++.+++-..
T Consensus 302 kt~lel~~kdlq~~i~~n~ 320 (1200)
T KOG0964|consen 302 KTKLELKIKDLQDQITGNE 320 (1200)
T ss_pred hhhhhhhhHHHHHHhhhhh
Confidence 4556667777777766443
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.24 E-value=1 Score=49.92 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
..+.+++.++.+++.+++++..+.. ....+++....+..+.+.+++++..+|.++++.++.++..|+.+++.++.+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665554443 233344455555566666777778888888888888888888888777765
No 151
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.20 E-value=13 Score=47.87 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 941 AEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 941 ~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
.|..+++.++++...+.+.++-++++.++++.-|. -.+.+...|+.+|++-...|+..+.+|-.
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~-------itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILG-------ITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555555555554455444333 33333444455555555555555544443
No 152
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.20 E-value=0.063 Score=54.73 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35689999999999999999999987764
No 153
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.18 E-value=19 Score=45.68 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTV-----------SEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNL 1002 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~e-----------le~~~~~l~~el~~le~~~~~L~eel~~Leeki~~L 1002 (1491)
.+++.|+..+..|+.+++++..++.....++.- .+-+.....+++.-++..+..|...++.-..-+..|
T Consensus 534 kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeL 613 (786)
T PF05483_consen 534 KQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEEL 613 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 355566666666666666555554443332221 222223455566778888888888888888888999
Q ss_pred HHHHHHHHHHHhh
Q 000453 1003 ESENQVLRQQALA 1015 (1491)
Q Consensus 1003 e~E~~~Lkq~~~~ 1015 (1491)
+.+|+.|+.+...
T Consensus 614 qqeNk~LKKk~~a 626 (786)
T PF05483_consen 614 QQENKALKKKITA 626 (786)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987544
No 154
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.03 E-value=45 Score=47.88 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=24.2
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
-..+|+|.+|||||.+.-.++.+|..-+
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~~ 52 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDGK 52 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcCC
Confidence 3577999999999999999999998643
No 155
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.86 E-value=0.076 Score=53.77 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999996
No 156
>PTZ00121 MAEBL; Provisional
Probab=92.79 E-value=53 Score=45.25 Aligned_cols=101 Identities=8% Similarity=0.094 Sum_probs=50.3
Q ss_pred CcccCCCCCChHHHHHHHHHHhhcCCcccccccee----------EEeCCCCCCCC-----CCCHHHHHHhhcCCcC-C-
Q 000453 26 DDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNIL----------IAVNPFQRLPH-----LYDTHMMEQYKGAAFG-E- 88 (1491)
Q Consensus 26 ~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~~L----------iavNP~~~l~~-----ly~~~~~~~y~~~~~~-~- 88 (1491)
=|||.=...++..|+.....|......|||-|..= --.+||++..+ .-.+..+..-.++.+. -
T Consensus 162 ydmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~hGlGGrlGsn~~~plh~ynp~e~~vTk~M~~p~lI~nl~DCSIyS~C 241 (2084)
T PTZ00121 162 YDMCFEKFYNNMEISDRIKKRGKQNRKYIHFGSHGLGGRFGANIDEPLHDYKNDEHHVTKKMGFPEKIKNLFDCSIYSHC 241 (2084)
T ss_pred hhHHHHHHhhccchhhhhhhcccccccceeeeccccccccCcCCCCCCCcCCCcccccccccCChhhhCChhhcchHhhc
Confidence 36766666777667766666666677788766321 12334443210 1112222111111110 0
Q ss_pred -CCcchhhHHHHHHHH---HHhcCCCeEEEEcCCCCCChhHHH
Q 000453 89 -LSPHVFAVGDAAYRA---MINEGKSNSILVSGESGAGKTETT 127 (1491)
Q Consensus 89 -~~PHifaiA~~Ay~~---m~~~~~~QsIiisGeSGaGKT~~~ 127 (1491)
-|---++.....||. |......-||||--.-+. +|.+|
T Consensus 242 ~gpC~~~df~n~CFR~LP~~Fnh~TkECvilGtHe~~-R~~nC 283 (2084)
T PTZ00121 242 IGPCFGKDFNNECFLNLPILFNHQTKECVIIGTHEAK-RIHNC 283 (2084)
T ss_pred cccccCccCCcchhhcchHhhcCCCCceEEEecchhh-hhhhh
Confidence 022223344566664 456778889998655554 55554
No 157
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.76 E-value=14 Score=47.95 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=8.1
Q ss_pred eccceeecccchh
Q 000453 673 IGKTKVFLRAGQM 685 (1491)
Q Consensus 673 iGkTkVFlr~~~~ 685 (1491)
.|.|...|..+.-
T Consensus 59 ~Ges~~~f~~w~~ 71 (569)
T PRK04778 59 TGQSEEKFEEWRQ 71 (569)
T ss_pred CcccHHHHHHHHH
Confidence 5777776666543
No 158
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.69 E-value=8.2 Score=47.09 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 1004 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~ 1004 (1491)
++..|..++..++.++..+..+.+++..-++.....-+.+..++++++.+..++...+.+.+++++.|..
T Consensus 234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555555555555555555555555555555555566666666666666677777777777666654
No 159
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.65 E-value=31 Score=43.61 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQ 951 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~ 951 (1491)
...+..|+.+++.|+.+..
T Consensus 248 q~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 160
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.58 E-value=0.11 Score=47.17 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 161
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.57 E-value=13 Score=48.57 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 952 SQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1009 (1491)
Q Consensus 952 ~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~L 1009 (1491)
.++.++..+++++.-+....+++.+=..-+|+++.+.-+.++.-++.-..|+.|+...
T Consensus 125 ~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~ 182 (717)
T PF09730_consen 125 GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQH 182 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444433333333333345555555555555566666666666553
No 162
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.48 E-value=0.087 Score=57.09 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=22.6
Q ss_pred HhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 105 INEGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 105 ~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456778999999999999999999998888754
No 163
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.46 E-value=0.096 Score=56.86 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
+.|+|+|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999998887753
No 164
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.38 E-value=26 Score=40.56 Aligned_cols=188 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000453 817 RAIIVSQCGWRCRVARRELR-KLKMAARETGALQEAK----NKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEA- 890 (1491)
Q Consensus 817 ~a~i~iQ~~~R~~~ark~l~-~lk~~a~e~~~l~~~~----~~le~k~~el~~~L~~e~~~~~~lee~~~~e~~~L~~~- 890 (1491)
+-+..|+-+-+...+++.+. .+..+..++.+++... ..+...-.-|.+.|...+.....|+.....-...|.+.
T Consensus 99 RLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKt 178 (305)
T PF14915_consen 99 RLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKT 178 (305)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 891 --LHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSE 968 (1491)
Q Consensus 891 --l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele 968 (1491)
++.++..+...+.++.+...........+.+.+.....+ ++.+..|+.++--|++++++...+....++.+...+
T Consensus 179 L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~---eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ 255 (305)
T PF14915_consen 179 LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESL---EERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ 255 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 969 AKN--------GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1007 (1491)
Q Consensus 969 ~~~--------~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~ 1007 (1491)
..- .+.+++.--++.+..+|..+...|.+.+-..+.|..
T Consensus 256 ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkEKa 302 (305)
T PF14915_consen 256 DQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKEKA 302 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
No 165
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.32 E-value=0.17 Score=51.70 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.0
Q ss_pred hcCCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 106 NEGKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 106 ~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.......|+|.|++|+|||..++.+.+.+.
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 344567999999999999999999999885
No 166
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.24 E-value=15 Score=42.49 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=13.2
Q ss_pred CCccchhHHHHHHHhccc
Q 000453 1095 GGKPVAACLIYKCLLHWR 1112 (1491)
Q Consensus 1095 ~~kp~pA~il~~cl~~~~ 1112 (1491)
..+.+-|.-+|..+.-|.
T Consensus 307 ~qRllFAN~~fk~wtGy~ 324 (401)
T PF06785_consen 307 SQRLLFANSQFKTWTGYS 324 (401)
T ss_pred hhHHHHhHHHHHHHhccC
Confidence 346667888888877776
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.23 E-value=0.93 Score=53.83 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 980 DAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 980 ~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
..+.+..+++++.+.++.++.....++.+|+
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444
No 168
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.22 E-value=20 Score=38.96 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000453 885 AKLQEALHAMQLRVDDANSLVI 906 (1491)
Q Consensus 885 ~~L~~~l~~l~~~l~~~~~~l~ 906 (1491)
..|+-++..+...+++-..++.
T Consensus 45 eqLkien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 169
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.19 E-value=0.092 Score=61.04 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
++.+.+=|-||||||||++++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3567778999999999999999999885
No 170
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.11 E-value=23 Score=39.41 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 976 KKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 976 ~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
.++..++..++..+-.+..|++.+..-..||..|-
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555544443
No 171
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.97 E-value=31 Score=41.47 Aligned_cols=13 Identities=46% Similarity=0.488 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 000453 1000 SNLESENQVLRQQ 1012 (1491)
Q Consensus 1000 ~~Le~E~~~Lkq~ 1012 (1491)
..|+.+.+.|+|+
T Consensus 406 ~eleqevkrLrq~ 418 (502)
T KOG0982|consen 406 IELEQEVKRLRQP 418 (502)
T ss_pred HHHHHHHHHhccc
Confidence 3444444555443
No 172
>PRK06696 uridine kinase; Validated
Probab=91.77 E-value=0.22 Score=56.28 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 96 VGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 96 iA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
+|+..+.. ..+..--|.|+|.||||||+.|+.|.+.|..
T Consensus 10 la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 10 LAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45555432 3556788999999999999999999999854
No 173
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.76 E-value=0.17 Score=58.67 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4456899999999999999999987765
No 174
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.70 E-value=6.2 Score=46.50 Aligned_cols=74 Identities=14% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1008 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~ 1008 (1491)
.+..++.+++.++.+++..++++.+++..+...+..........+.......++.+++...+.++..++.....
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333333222222222333333444444555555555444444433
No 175
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.66 E-value=57 Score=44.94 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHH
Q 000453 1285 SIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQL 1322 (1491)
Q Consensus 1285 ~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~ina~l 1322 (1491)
..+..+..+-..+...+++..+...+..++....|..+
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666665555555555555555444443
No 176
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.66 E-value=0.32 Score=55.20 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.6
Q ss_pred hcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcC
Q 000453 106 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 139 (1491)
Q Consensus 106 ~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~ 139 (1491)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 4477889999999999999999999999986544
No 177
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.65 E-value=20 Score=45.85 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000453 993 QRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 993 ~~Leeki~~Le~E~~~Lk 1010 (1491)
..|.+.+..|+++...|.
T Consensus 245 ~~L~~tVq~L~edR~~L~ 262 (739)
T PF07111_consen 245 EELLETVQHLQEDRDALQ 262 (739)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 178
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.62 E-value=0.28 Score=50.53 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
..+..|+++|++|||||+.+|.+++.|-
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4566899999999999999999998873
No 179
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.54 E-value=8.2 Score=43.56 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1013 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~~ 1013 (1491)
+...|..|+..|-+..+.+++..+.+.. +..--+.++.-++.++......++.|+.++..++.|+.+.++.+
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlsh-------dlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSH-------DLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555444444443333333 33333334445566666666666666666666777666665544
No 180
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.52 E-value=0.16 Score=50.21 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCChhHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLM 131 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~ 131 (1491)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999976
No 181
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.49 E-value=2 Score=46.63 Aligned_cols=12 Identities=42% Similarity=0.335 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLL 950 (1491)
Q Consensus 939 L~~e~~~Lk~ei 950 (1491)
+.+++..|..++
T Consensus 147 ~~~EkeeL~~el 158 (290)
T COG4026 147 LQKEKEELLKEL 158 (290)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 182
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.49 E-value=13 Score=46.06 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 980 DAEKRVDELQDSVQRLAEKVSNLESEN 1006 (1491)
Q Consensus 980 ~le~~~~~L~eel~~Leeki~~Le~E~ 1006 (1491)
+++.++..++.++..++.++..++...
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555443
No 183
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.44 E-value=34 Score=40.04 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000453 994 RLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 994 ~Leeki~~Le~E~~~Lkq~ 1012 (1491)
.+...+..|..|..+|+++
T Consensus 226 ~~~shI~~Lr~EV~RLR~q 244 (310)
T PF09755_consen 226 RLSSHIRSLRQEVSRLRQQ 244 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554
No 184
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=28 Score=42.14 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 980 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1013 (1491)
Q Consensus 980 ~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~~ 1013 (1491)
...+.+.+....+.+.+..|.++.+|-+.|+.+.
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ 419 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQE 419 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666677777777777777777777654
No 185
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.38 E-value=0.21 Score=52.76 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999998765
No 186
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.38 E-value=0.16 Score=53.18 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRY 133 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~y 133 (1491)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999999877764
No 187
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.35 E-value=18 Score=40.94 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Q 000453 932 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL------------------KDAEKRVDELQDSVQ 993 (1491)
Q Consensus 932 ~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el------------------~~le~~~~~L~eel~ 993 (1491)
.+..+.-|+..+...+.+++.|+.++..++.+++..+.........+ .-......+|++...
T Consensus 93 Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekyn 172 (307)
T PF10481_consen 93 KESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYN 172 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHH
Confidence 34556666666666666666666666666655554444332111000 012234445555544
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000453 994 RLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 994 ~Leeki~~Le~E~~~Lkq~ 1012 (1491)
.--++-..|+.|.+.|.-+
T Consensus 173 keveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 173 KEVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHHhhHHHHHHHHhcc
Confidence 4444556677777777643
No 188
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.33 E-value=51 Score=41.87 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLLQSQTQTADEAKQAFTV----SEAKNGELTKKLKDAEKRVDELQDSV 992 (1491)
Q Consensus 939 L~~e~~~Lk~ei~~l~~el~ele~~~~e----le~~~~~l~~el~~le~~~~~L~eel 992 (1491)
++++-..|-.++++|...+...+..... ++.++++++++++.+|.++.++.+++
T Consensus 578 ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 578 ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333334444444444444443332221 33444555555555555555554443
No 189
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.33 E-value=64 Score=43.00 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
..++.++.++..++..++.+..++.+....+..++.....+.........++..+.-.++...+++.+|+.+...++.
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~ 542 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRA 542 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344556666666666666666666666655555555555554444445566777777777777777777777766443
No 190
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.30 E-value=2.4 Score=46.88 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 932 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEK 998 (1491)
Q Consensus 932 ~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leek 998 (1491)
....+..|+.++..|+.++..+..++.+....++.+..+...+.-++..++.++..++.+..+|=+.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666655555555555555555555555443
No 191
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.29 E-value=21 Score=47.00 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 965 TVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 965 ~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
++++....+-++++...+-+...+.++-..+...+..|++....|-
T Consensus 331 ~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 331 QKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL 376 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555556666666666555543
No 192
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.26 E-value=0.18 Score=56.23 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.+.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999887
No 193
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.24 E-value=0.22 Score=59.05 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.8
Q ss_pred HHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 101 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 101 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.+.++..+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 5999999999999999999998864
No 194
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.23 E-value=0.15 Score=56.46 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999988753
No 195
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.21 E-value=0.15 Score=51.85 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999984
No 196
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.14 E-value=0.15 Score=56.54 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56889999999999999999998875
No 197
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.10 E-value=0.15 Score=54.75 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
+..-|||||.||+|||+..|.++.-.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34569999999999999999999766
No 198
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.10 E-value=33 Score=39.30 Aligned_cols=29 Identities=24% Similarity=0.396 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 984 RVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 984 ~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
+...+..++....+.+..|+.+...|+.+
T Consensus 187 ~N~~m~kei~~~re~i~el~e~I~~L~~e 215 (258)
T PF15397_consen 187 ENQVMQKEIVQFREEIDELEEEIPQLRAE 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555543
No 199
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.08 E-value=9.1 Score=43.91 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 969 AKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1006 (1491)
Q Consensus 969 ~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~ 1006 (1491)
.+...|..++.+++..+..+.++....+.....|+.++
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444443
No 200
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.05 E-value=14 Score=46.95 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=14.3
Q ss_pred CCCCCcchhhHHHhchHHHHHHHhhcCC
Q 000453 1330 RECCSFSNGEFVKAGLAELEQWCHDSTE 1357 (1491)
Q Consensus 1330 ~~~cs~s~G~qIr~nls~LE~W~~~~~~ 1357 (1491)
++..-|||- ++-.|+.+.|+
T Consensus 756 ~DvlVWsN~--------RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSND--------RVIRWVQSIGL 775 (916)
T ss_pred ccceEeecH--------HHHHHHHhcCH
Confidence 456678875 45569999886
No 201
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.01 E-value=2.6 Score=45.77 Aligned_cols=71 Identities=24% Similarity=0.329 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1009 (1491)
Q Consensus 939 L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~L 1009 (1491)
++.....++.+++++.++.+++-+++.+++.++++...+++.++.+...|++.+..+..+..+|+.....|
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 33344444444444445555555555555555555555555555555555555544444444444444333
No 202
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.98 E-value=2.7 Score=49.98 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 936 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 936 ~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
...+..+.+.++.+.+++.+++++++.+..++.++..+++.+...++.+-.....+...+.-....++++...++.+
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555554455555555555555555655555544
No 203
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.88 E-value=20 Score=45.76 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKG 948 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ 948 (1491)
.++.+++.+...+..
T Consensus 254 ~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 254 GRIEALEKQLDALRL 268 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 204
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.87 E-value=0.16 Score=55.96 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
|-|+|.||||||+.|+.+...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 67999999999999999999997543
No 205
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.87 E-value=0.29 Score=58.37 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=36.9
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhcC-CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.+.|+.....++-.|--. ..........+ -+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~--~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAAD--KETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHH--HHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 456777666665444322 22344444344 46778889999999999999998876
No 206
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.86 E-value=2.5 Score=52.63 Aligned_cols=78 Identities=17% Similarity=0.319 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG---ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~---~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
..++.|+.++..|+..+++++.++++++.++.++..+.+ ....++..++.++..|+.++.+-...+..|+..+..++
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555444432 12344566677777777777777777777777777776
Q ss_pred H
Q 000453 1011 Q 1011 (1491)
Q Consensus 1011 q 1011 (1491)
+
T Consensus 509 k 509 (652)
T COG2433 509 K 509 (652)
T ss_pred H
Confidence 4
No 207
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.84 E-value=0.17 Score=55.89 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998887
No 208
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.81 E-value=28 Score=46.13 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 847 ALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVI 906 (1491)
Q Consensus 847 ~l~~~~~~le~k~~el~~~L~~e~~~~~~lee~~~~e~~~L~~~l~~l~~~l~~~~~~l~ 906 (1491)
...+....+.+++..+-+.+..........|.+..+|...++.++..++..+++++.++.
T Consensus 604 ~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 604 EAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555554444443222222333444455566666666666666666555543
No 209
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.79 E-value=0.27 Score=57.03 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=26.5
Q ss_pred HHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 101 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 101 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
+..+.... .-.|+|+|++|||||++.+.++.++.
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 44454432 34799999999999999999999885
No 210
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.70 E-value=0.39 Score=54.11 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 97 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 97 A~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
+-.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334445444667889999999999999999999988764
No 211
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.65 E-value=0.34 Score=58.22 Aligned_cols=57 Identities=25% Similarity=0.333 Sum_probs=37.3
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.+.|+...+.++-.|-..+. ........+....++++|++|+|||+.++.+.+++..
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~--~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVE--RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHH--HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45666555554443333222 2333444455457999999999999999999998863
No 212
>PRK11281 hypothetical protein; Provisional
Probab=90.65 E-value=16 Score=50.58 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000453 992 VQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 992 l~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
..++-+.+.++..+...+.++
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~ 307 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQ 307 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 213
>PLN03188 kinesin-12 family protein; Provisional
Probab=90.63 E-value=39 Score=46.31 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=25.9
Q ss_pred chhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHH
Q 000453 92 HVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETT 127 (1491)
Q Consensus 92 HifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~ 127 (1491)
.||..+-.-.-.-.-.|-|-||+.-|.+|||||.|.
T Consensus 148 dVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 148 DIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 566644333223334788999999999999999874
No 214
>PRK10698 phage shock protein PspA; Provisional
Probab=90.61 E-value=34 Score=38.63 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------HHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKR--VD---------ELQDSVQRLAEKVSN 1001 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~--~~---------~L~eel~~Leeki~~ 1001 (1491)
...+..|+.+....+..++.++..+..++.++.+++.....+..+...++.. +. ......+.+|+++..
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777776666555443322 21 223456667778887
Q ss_pred HHHHHHHH
Q 000453 1002 LESENQVL 1009 (1491)
Q Consensus 1002 Le~E~~~L 1009 (1491)
++.+-...
T Consensus 178 ~Ea~aea~ 185 (222)
T PRK10698 178 MEAEAESH 185 (222)
T ss_pred HHHHHhHh
Confidence 77765543
No 215
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.54 E-value=43 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=12.3
Q ss_pred ccccchhhhhccHHHHHHhhh
Q 000453 1068 PQKTLNEKQQENQDLLIKCIS 1088 (1491)
Q Consensus 1068 ~~~~~~e~~~~~~~~l~~~l~ 1088 (1491)
..+.+.-+..+|.+++.+.+.
T Consensus 477 ~~~~Fi~~~~eD~~lf~~~i~ 497 (1072)
T KOG0979|consen 477 DLKAFICCDSEDYLLFVKKIK 497 (1072)
T ss_pred ccceeeeechHHHHHHHHHhh
Confidence 344555555667777666554
No 216
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.42 E-value=14 Score=41.01 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL 978 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el 978 (1491)
..+......++.++..++-+.+.++..+..++.+.+++..+.
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 217
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.39 E-value=0.24 Score=55.28 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.+...|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3557888999999999999999887764
No 218
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.38 E-value=0.2 Score=54.18 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.+...|+++|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999864
No 219
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.30 E-value=45 Score=39.85 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 851 AKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKL 887 (1491)
Q Consensus 851 ~~~~le~k~~el~~~L~~e~~~~~~lee~~~~e~~~L 887 (1491)
...++|++-.--+-.|++.++...+|+....+|.+.|
T Consensus 166 ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEal 202 (552)
T KOG2129|consen 166 KIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEAL 202 (552)
T ss_pred HHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334444443334444555555555555555554433
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.19 E-value=0.2 Score=50.67 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.8
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998888654
No 221
>PRK08233 hypothetical protein; Provisional
Probab=90.19 E-value=0.18 Score=54.57 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998874
No 222
>PTZ00301 uridine kinase; Provisional
Probab=90.17 E-value=0.22 Score=55.62 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
|-|+|.||||||+.|+.|.+.|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67999999999999999887774
No 223
>PRK06762 hypothetical protein; Provisional
Probab=90.12 E-value=0.26 Score=52.75 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999888
No 224
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.06 E-value=28 Score=46.32 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 967 SEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1008 (1491)
Q Consensus 967 le~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~ 1008 (1491)
.+++..++..++..+.++-...+.++....+.+.+++.+++.
T Consensus 316 ~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 316 IEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333334444444445555555555555555555555555433
No 225
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=73 Score=41.53 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 950 LQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 950 i~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
++.......+.......++...++...++.+++..+.+...+++.+..+...|++|+..|+..
T Consensus 554 le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 554 LEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555555666666666666666666666666666644
No 226
>PRK07261 topology modulation protein; Provisional
Probab=90.05 E-value=0.22 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl 134 (1491)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999986654
No 227
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.90 E-value=39 Score=43.86 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 936 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE 997 (1491)
Q Consensus 936 ~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Lee 997 (1491)
...++.+...++..+..+...+.+......+++...+++.+++.+++.+...+.+.+..++.
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333333334444444444444444444444444333333
No 228
>PRK06547 hypothetical protein; Provisional
Probab=89.86 E-value=0.46 Score=51.39 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=25.1
Q ss_pred hcCCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 106 NEGKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 106 ~~~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
..+...-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999988764
No 229
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.86 E-value=0.52 Score=57.38 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=41.3
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhc-CCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.+.|+...+.++--|-..+. ..+++... +-+++++++|+.|+|||+.++.+.+.+-+
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~--~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVT--AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHH--HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 46777777666654433332 34444444 56899999999999999999999998863
No 230
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.85 E-value=0.22 Score=53.34 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl 134 (1491)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 231
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.78 E-value=36 Score=37.59 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000453 946 LKGLLQSQTQTADEAKQAFTVS 967 (1491)
Q Consensus 946 Lk~ei~~l~~el~ele~~~~el 967 (1491)
|...++.++.++++.+..+..+
T Consensus 123 L~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 123 LQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 232
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=89.77 E-value=0.25 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=20.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
|+|+|.+|||||+.++.+...+-
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998763
No 233
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.72 E-value=0.26 Score=53.74 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=22.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 234
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.71 E-value=0.28 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
..-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887765
No 235
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.69 E-value=62 Score=40.15 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000453 979 KDAEKRVDELQDSVQRLA 996 (1491)
Q Consensus 979 ~~le~~~~~L~eel~~Le 996 (1491)
..+..++..++++.+-+.
T Consensus 197 EglkheikRleEe~elln 214 (772)
T KOG0999|consen 197 EGLKHEIKRLEEETELLN 214 (772)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344455555555444333
No 236
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.69 E-value=0.21 Score=56.05 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.4
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 000453 112 SILVSGESGAGKTETTKML 130 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~ 130 (1491)
-|||||-||||||++.+-+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987654
No 237
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.67 E-value=34 Score=46.15 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=7.3
Q ss_pred HHHHHHHHHHcCC
Q 000453 656 QVACQMILDKKGL 668 (1491)
Q Consensus 656 ~~~~~~il~~~~~ 668 (1491)
+...+.+++.+++
T Consensus 84 r~v~~~VV~~L~L 96 (754)
T TIGR01005 84 NEILKQVVDKLGL 96 (754)
T ss_pred HHHHHHHHHHcCC
Confidence 3455566666655
No 238
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.65 E-value=12 Score=45.27 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 986 DELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 986 ~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
....+.+...+++|.+|++++..|.
T Consensus 424 e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 424 EREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3344455555666666666665543
No 239
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.55 E-value=0.37 Score=56.95 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
...|+|+|.+|||||+..+.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999999864
No 240
>PRK08118 topology modulation protein; Reviewed
Probab=89.45 E-value=0.29 Score=52.71 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
+-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999988764
No 241
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=89.37 E-value=36 Score=36.98 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1008 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~ 1008 (1491)
..|....+.+.+..+..+..+..+..++.+.+...+-..+.++.++..++++++.+.....+...+..++..
T Consensus 126 k~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 126 KSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555566666777777777777777777766666666544
No 242
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.36 E-value=5.1 Score=35.39 Aligned_cols=45 Identities=31% Similarity=0.486 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 960 AKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 1004 (1491)
Q Consensus 960 le~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~ 1004 (1491)
+..++...+..+..+++++++.+.+...|..++..|++++.+++.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555666667777777777777777777777777766654
No 243
>PRK00131 aroK shikimate kinase; Reviewed
Probab=89.34 E-value=0.32 Score=52.16 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
....|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999887
No 244
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.29 E-value=0.58 Score=53.37 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 97 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 97 A~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|-.+.+.+.......++++.|++|+|||+.+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455555555556679999999999999999998888774
No 245
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=89.28 E-value=0.28 Score=55.36 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 558999999999999999988853
No 246
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=89.14 E-value=0.26 Score=56.73 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCChhHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKML 130 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~ 130 (1491)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999876544
No 247
>PLN03025 replication factor C subunit; Provisional
Probab=89.14 E-value=0.49 Score=56.54 Aligned_cols=56 Identities=23% Similarity=0.424 Sum_probs=41.6
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.+.|+-..+.++-.|--.+. ..+.+...+.-..++++|++|+|||+.++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~--~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVS--RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHH--HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 46677766666655543332 355666677667899999999999999999999875
No 248
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.07 E-value=0.35 Score=52.28 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
++++.|.||.|||+.++.+.++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999997
No 249
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.06 E-value=63 Score=39.39 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 967 SEAKNGELTKKLKDAEKRVDELQDSVQRLAEK 998 (1491)
Q Consensus 967 le~~~~~l~~el~~le~~~~~L~eel~~Leek 998 (1491)
+..+.+++.+++....-+.+.|...+.+.+..
T Consensus 373 mn~Ere~L~reL~~i~~~~~~L~k~V~~~~le 404 (622)
T COG5185 373 MNQEREKLTRELDKINIQSDKLTKSVKSRKLE 404 (622)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhHHHH
Confidence 33444445555555555555555544444433
No 250
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=59 Score=39.52 Aligned_cols=78 Identities=12% Similarity=0.297 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAK--NGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~--~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
.++++++.....+-++++.-++....+..+++.+-.. .....+.+.+.-..+....+++.+.-+.-.+|+.+...+..
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444443333333333333322111 12345667777777777777777777777777777766654
No 251
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.00 E-value=0.25 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
+.|+|+|.||||||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 579999999999999999986544
No 252
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.98 E-value=1e+02 Score=41.66 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=22.4
Q ss_pred HHHHHHhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHH
Q 000453 746 AAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVAR 784 (1491)
Q Consensus 746 ~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aR 784 (1491)
.++..-|..|.-|-.-+.-...-..+...++.++....+
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~ 249 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKER 249 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhh
Confidence 466677777777766555554444444555555544443
No 253
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.94 E-value=52 Score=38.32 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 943 VENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1009 (1491)
Q Consensus 943 ~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~L 1009 (1491)
+..|-.+.++...++-++-.+..+++++...+-.++-+....++.+.+++..+...+.+++...+.|
T Consensus 181 i~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 181 IQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444444444444444444444444444444444333
No 254
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.93 E-value=9.5 Score=44.91 Aligned_cols=78 Identities=12% Similarity=0.241 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
..++..++..+..++..++.+++++++.+..+.+++..++.....+.............+.++...+...+.....+.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 139 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQ 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666666666666555555555544444443333333333444444444444444444433
No 255
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.90 E-value=0.29 Score=53.63 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999888763
No 256
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.87 E-value=56 Score=39.10 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADE 959 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~e 959 (1491)
..++.|+.|+++|+..+....+...+
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655554444433
No 257
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.86 E-value=0.28 Score=53.72 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
+.-.|||+|.||||||+.++.+++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34579999999999999999998765
No 258
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.74 E-value=32 Score=35.55 Aligned_cols=59 Identities=24% Similarity=0.440 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 938 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 999 (1491)
Q Consensus 938 ~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki 999 (1491)
.++.++..|+.+.+.....+...+.. .+.....++.++.+++.++.+|.....-|-.++
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l~~~e~s---w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAELEESEAS---WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333333332 222333444555555555555555544444443
No 259
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.73 E-value=0.27 Score=51.10 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998875
No 260
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.73 E-value=0.34 Score=47.99 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999999864
No 261
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.70 E-value=0.25 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
|++.|.||||||+.++.+.+.+-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999998874
No 262
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.57 E-value=0.48 Score=51.20 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
+...|+|.|.+|||||+.++.+...|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 263
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.49 E-value=0.31 Score=53.36 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|.|+|-||||||+.++.+...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999888775
No 264
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.49 E-value=0.88 Score=53.33 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.5
Q ss_pred cCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 107 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 107 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
.+.+--|-|+|.||||||+.++.+...+...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3456778899999999999999888777643
No 265
>PF13245 AAA_19: Part of AAA domain
Probab=88.47 E-value=0.59 Score=43.31 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.+...+|.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667788999999999888888888875
No 266
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=88.40 E-value=14 Score=46.93 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCcchhhHHHhchHHHHHHHhhcCCCc
Q 000453 1280 IAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEEF 1359 (1491)
Q Consensus 1280 ~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~~ 1359 (1491)
++.....+..|...+..|+.. +++.....+...+..-|+..+++.++++. -.|..-|.|+.+=+..| +.--+ .+
T Consensus 354 S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L---~~~~~-~~ 427 (494)
T PF04437_consen 354 SPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRAL---FSVFS-QY 427 (494)
T ss_dssp -GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHH---HTTS---T
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHH---HHHHH-hh
Confidence 445667899999999999999 99999999999999999999999999976 56666777777766444 44333 34
Q ss_pred ccchHHHhHHHHHHHHHHhhcCCCccCH--------------HHHHhcc-CCCCCHHHHHHHHh
Q 000453 1360 AGSAWDELRHIRQAVGFLVIHQKPKKTL--------------KEITNDL-CPVLSIQQLYRIST 1408 (1491)
Q Consensus 1360 ~~~~~~~L~~i~Qa~~lLq~~kk~~~~~--------------~~i~~~~-C~~Ls~~Ql~kiL~ 1408 (1491)
....-..+..|.+++.||-++..+.... .++..+. =..||+.++.+||.
T Consensus 428 ~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 428 TPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 4555589999999999999986543322 1121111 14788888887775
No 267
>PF05729 NACHT: NACHT domain
Probab=88.33 E-value=0.39 Score=50.74 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 479999999999999999998887643
No 268
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.25 E-value=0.4 Score=57.59 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
....|+|+|.+|||||+..+.++.++-
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 345699999999999999999988874
No 269
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.24 E-value=0.33 Score=55.38 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHHHhcC
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLAYLGG 139 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~ 139 (1491)
+..++-+-||||+|||+++|.+++-+--.+|
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 5567779999999999999999997764443
No 270
>PF12846 AAA_10: AAA-like domain
Probab=87.99 E-value=0.42 Score=56.06 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.6
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999888765
No 271
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.99 E-value=94 Score=40.09 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=14.3
Q ss_pred ccCCCCCHHHHH-------HHHhcCccCCCC
Q 000453 1393 DLCPVLSIQQLY-------RISTMYWDDKYG 1416 (1491)
Q Consensus 1393 ~~C~~Ls~~Ql~-------kiL~~Y~~d~~e 1416 (1491)
+.|..|-.-+|. +|-++|.+.++.
T Consensus 632 ~ac~sL~Gykid~~~~s~~ritS~ya~~~~~ 662 (716)
T KOG4593|consen 632 DACYSLLGYKIDFTLESRYRLTSGYAEEPDD 662 (716)
T ss_pred HHHHhhhhhhhhcccccceeeeeeccCCCch
Confidence 566666666663 555666655444
No 272
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=87.98 E-value=0.39 Score=50.33 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=22.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|.|||.+|||||+-++.+-+++-.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 789999999999999999998863
No 273
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.98 E-value=0.36 Score=58.31 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=26.8
Q ss_pred HHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 101 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 101 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
+..+.. .....|+|+|++|||||++.+.+++++.
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 444443 2357899999999999999999998874
No 274
>PRK12377 putative replication protein; Provisional
Probab=87.93 E-value=0.76 Score=52.70 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=33.5
Q ss_pred chhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 92 HVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 92 HifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 85 ~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 85 YALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 566655554444332 35799999999999999999999999853
No 275
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.91 E-value=0.42 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|+|+|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 276
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.90 E-value=0.37 Score=58.25 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
...-|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999999865
No 277
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.86 E-value=53 Score=37.06 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 000453 932 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKR-----------VDELQDSVQRLAEKVS 1000 (1491)
Q Consensus 932 ~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~-----------~~~L~eel~~Leeki~ 1000 (1491)
.+..+..|+.+...++..++.++..+.+++.++.+.+.....+..+...++.. .....+.++++++++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~ 176 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVD 176 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 45666777777777888888888888888888877777766555554443332 2233445666667766
Q ss_pred HHHHHHH
Q 000453 1001 NLESENQ 1007 (1491)
Q Consensus 1001 ~Le~E~~ 1007 (1491)
.++.+..
T Consensus 177 ~~ea~ae 183 (219)
T TIGR02977 177 ELEAQAE 183 (219)
T ss_pred HHHHHHH
Confidence 6665543
No 278
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=87.84 E-value=9.3 Score=37.18 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1008 (1491)
Q Consensus 939 L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~ 1008 (1491)
|-.|..+|+.+..-|++.+-+.+....++.......+..+..++.+++.|.=..+.|+..+..|+.|...
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665555555555555555555555566666666777766777777777777776663
No 279
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.83 E-value=0.63 Score=57.80 Aligned_cols=55 Identities=18% Similarity=0.387 Sum_probs=39.5
Q ss_pred HHhhcCCcCCC--CcchhhHHHHHHHHHHhcC-CCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 79 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 79 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
+.|+-..+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||+.++.+.+.|.+-
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 56766665554 3455543 44444444 47899999999999999999999998753
No 280
>PRK14738 gmk guanylate kinase; Provisional
Probab=87.82 E-value=0.41 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRY 133 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~y 133 (1491)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999998888764
No 281
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.78 E-value=0.31 Score=52.87 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
+-|+|.|.||||||+.++.+++.+-
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 5699999999999999999998653
No 282
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.74 E-value=41 Score=43.55 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 973 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 973 ~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
.++-+++..|.+..-|.-++..-+.+|..|++=...|+.
T Consensus 512 ~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 512 SLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555543
No 283
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.69 E-value=0.54 Score=56.30 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
..|+|+|++|||||+..+.++.++-
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 5699999999999999999888774
No 284
>PRK06217 hypothetical protein; Validated
Probab=87.66 E-value=0.38 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
-|+|+|-||||||+.++.+.+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 399999999999999999988763
No 285
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=87.66 E-value=0.33 Score=50.29 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
|+++|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999987664
No 286
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.60 E-value=0.7 Score=54.95 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=38.8
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.+.|+...+.++..|--+ -...+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 8 ~~kyrP~~~~~~~g~~~~--~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEI--VERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred chhhCCCcHHHhcCcHHH--HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 345665555555555432 23455555555555689999999999999999988875
No 287
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=87.54 E-value=0.3 Score=57.97 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
.-++-+-||||||||.|+..||+-|.+-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3467789999999999999999999863
No 288
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=87.47 E-value=25 Score=42.07 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000453 854 KLEKRVEELTWRLQIEK 870 (1491)
Q Consensus 854 ~le~k~~el~~~L~~e~ 870 (1491)
.+|..+.+++.+|+.++
T Consensus 256 ~aEqsl~dlQk~Lekar 272 (575)
T KOG4403|consen 256 RAEQSLEDLQKRLEKAR 272 (575)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666777777776444
No 289
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.47 E-value=30 Score=41.92 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 970 KNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 970 ~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
...+.+.++...+.++..+++.+..++.+......+...|++
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~ 270 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEE 270 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443
No 290
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.47 E-value=0.6 Score=56.82 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=29.7
Q ss_pred HHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 101 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 101 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
++.....+.+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344677889999999999999999999998864
No 291
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.44 E-value=6.7 Score=35.63 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1000 (1491)
Q Consensus 939 L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~ 1000 (1491)
|++++..|+..++.+..+++..+.....+..+.+....++..+-.++.+|.++++.+..++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666665555555555666665555566666666666655555555433
No 292
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.35 E-value=24 Score=45.02 Aligned_cols=11 Identities=45% Similarity=0.610 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000453 888 QEALHAMQLRV 898 (1491)
Q Consensus 888 ~~~l~~l~~~l 898 (1491)
+.++...+.++
T Consensus 210 ~~~l~~~~~~l 220 (498)
T TIGR03007 210 QEELEAARLEL 220 (498)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 293
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.27 E-value=19 Score=35.29 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQR 994 (1491)
Q Consensus 939 L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~ 994 (1491)
|+.+++..+...+.+-++.++++..+..++.......+.+.+++.++.++...++.
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444443444444444444444444333
No 294
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.26 E-value=19 Score=41.36 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 979 KDAEKRVDELQDSVQRLAEKVSNLES 1004 (1491)
Q Consensus 979 ~~le~~~~~L~eel~~Leeki~~Le~ 1004 (1491)
..++........+...++.++...+.
T Consensus 92 ~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 92 ARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444443333333
No 295
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=87.18 E-value=0.85 Score=48.64 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=29.5
Q ss_pred hcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhcC
Q 000453 106 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 139 (1491)
Q Consensus 106 ~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~ 139 (1491)
...+.-.|-++|-||||||+.|..+-+-|...|-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 4456789999999999999999999999988763
No 296
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=87.18 E-value=0.74 Score=59.34 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=40.1
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHh-cCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~-~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
.+.|+-..+.++--|=..+ +...++.. .+-.|+++++|.+|.|||++++.+.+.|.+.
T Consensus 15 a~KyRP~~f~dliGq~~~v--~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMV--RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhhhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3567666655553333222 23444443 4568999999999999999999999999764
No 297
>PRK03846 adenylylsulfate kinase; Provisional
Probab=87.13 E-value=0.7 Score=51.16 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=27.6
Q ss_pred hcCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 106 NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 106 ~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
...+...|+|+|.||||||+.++.+...|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34577899999999999999999999988653
No 298
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.10 E-value=0.45 Score=57.74 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999975
No 299
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.04 E-value=1.1 Score=50.81 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
..+..++|.|++|+|||+.++.+.+.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 457899999999999999999999887543
No 300
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=86.97 E-value=0.45 Score=49.95 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
+|+|.|.+|||||+.+|.+-.+|-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998873
No 301
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=86.84 E-value=0.53 Score=50.81 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
-|.|+|.||||||+..+.++..|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 67899999999999999999999753
No 302
>PRK12704 phosphodiesterase; Provisional
Probab=86.83 E-value=1e+02 Score=39.40 Aligned_cols=15 Identities=7% Similarity=-0.152 Sum_probs=8.8
Q ss_pred HhHHHHHHHHHHhhc
Q 000453 1366 ELRHIRQAVGFLVIH 1380 (1491)
Q Consensus 1366 ~L~~i~Qa~~lLq~~ 1380 (1491)
.+..|+++++.|...
T Consensus 415 ~~a~IV~~ADaLsa~ 429 (520)
T PRK12704 415 IEAVLVAAADAISAA 429 (520)
T ss_pred HHHHHHHHHHHHhCc
Confidence 456666666655544
No 303
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=86.67 E-value=0.51 Score=52.44 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
|-|+|-||||||+.|+.+..-|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999998886
No 304
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.65 E-value=1.1e+02 Score=39.49 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000453 792 RTKAAIIAQAQWRCHQAYSYY 812 (1491)
Q Consensus 792 ~~~aAi~IQ~~~R~~~~r~~y 812 (1491)
..++.++.++.+-.-..|.+.
T Consensus 85 ~~k~~~i~~r~~~~~~dr~~~ 105 (716)
T KOG4593|consen 85 LTKAQSILARNYEAEVDRKHK 105 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555455444
No 305
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.64 E-value=0.44 Score=55.41 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 5789999999999999999999887754
No 306
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=86.63 E-value=0.83 Score=57.70 Aligned_cols=57 Identities=21% Similarity=0.423 Sum_probs=40.1
Q ss_pred HHhhcCCcCCCCcchhhHHHHHHHH-HHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 79 EQYKGAAFGELSPHVFAVGDAAYRA-MINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 79 ~~y~~~~~~~~~PHifaiA~~Ay~~-m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
+.|+-..+.++.-|--.+. ..++ +...+-.++++++|+.|.|||++++.+.+.|.+.
T Consensus 13 ~kyRP~~f~dliGq~~vv~--~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVK--VLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHH--HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 5566666666543333332 3333 2345568999999999999999999999999764
No 307
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.58 E-value=71 Score=39.65 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 982 EKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 982 e~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
+.+...+++.+.+|...+.+.-+..+..+
T Consensus 708 ~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~ 736 (741)
T KOG4460|consen 708 AYQRKCIQSILKELGEHIREMVKQVKDIR 736 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777776666655555443
No 308
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.55 E-value=0.57 Score=49.20 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=22.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
++|+|++|+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999876
No 309
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=86.48 E-value=1 Score=57.51 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=43.0
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHH-hcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~-~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
.+.|+...+.++--|--.+ ..+..+. ..+-+++++++|+.|.|||+.|+.+.+.|.+.+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred HHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4667777666665444433 3444444 446689999999999999999999999997643
No 310
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.42 E-value=0.75 Score=57.69 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=40.8
Q ss_pred HHHhhcCCcCCCC--cchhhHHHHHHHHHH-hcCCCeEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 78 MEQYKGAAFGELS--PHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 78 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~-~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
.+.|+-..+.++- +|+-. ..+++. ..+-+|+++++|..|.|||++++.+-+.|.+..
T Consensus 4 a~KyRP~~f~dliGQe~vv~----~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVR----ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 3567766666654 44443 333333 345689999999999999999999999887654
No 311
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.36 E-value=0.46 Score=53.35 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
--+++-|.||||||++.|+|-+-+--
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35678999999999999998776643
No 312
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.34 E-value=27 Score=39.58 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 935 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG 972 (1491)
Q Consensus 935 ~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~ 972 (1491)
+.+.|..|.....+++....+++..++..+..++.+..
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455554444444444333
No 313
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=86.24 E-value=52 Score=38.95 Aligned_cols=165 Identities=20% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000453 842 ARETGALQEAKNKLEKRVEELTWRLQIE---------------KRLRTDLEEAKSQEIAKLQEA-LHAMQLRVDDANSLV 905 (1491)
Q Consensus 842 a~e~~~l~~~~~~le~k~~el~~~L~~e---------------~~~~~~lee~~~~e~~~L~~~-l~~l~~~l~~~~~~l 905 (1491)
.++++.++.....+..+.+..+..+... ++-.++|++...+.+++|+.+ -.+++.-.++....+
T Consensus 297 ~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLL 376 (593)
T KOG4807|consen 297 EKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLL 376 (593)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 906 IKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKG----LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDA 981 (1491)
Q Consensus 906 ~~e~~~~~~~~ee~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~----ei~~l~~el~ele~~~~ele~~~~~l~~el~~l 981 (1491)
.++-.....+++.+.+...| ++..+..+-..+....+.|+. +++++..+++-+.++...-.-++..+.+.++.-
T Consensus 377 AEETAATiSAIEAMKnAhrE--EmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEae 454 (593)
T KOG4807|consen 377 AEETAATISAIEAMKNAHRE--EMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAE 454 (593)
T ss_pred hhhhhhhhHHHHHHHHHHHH--HHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 982 EKRVDELQDSVQRLAEKVSNLESENQV 1008 (1491)
Q Consensus 982 e~~~~~L~eel~~Leeki~~Le~E~~~ 1008 (1491)
+..+.+.+.+.++|....++|...+..
T Consensus 455 rqaLRqCQrEnQELnaHNQELnnRLaa 481 (593)
T KOG4807|consen 455 RQALRQCQRENQELNAHNQELNNRLAA 481 (593)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHHHH
No 314
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=86.18 E-value=0.63 Score=48.54 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998654
No 315
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.10 E-value=48 Score=39.16 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 999 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki 999 (1491)
..|..++..|.-+|+-|+.+++++++.+.+++++..+..+++..+...++.++.++..+++.+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666667777777777777777777777666555555555555555555555555444
No 316
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=85.99 E-value=0.23 Score=66.80 Aligned_cols=80 Identities=24% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
...++.++.++..|..++.++...+.+....+.++++.+..++.++.+++..+.++...+...+.+...|+.++..++++
T Consensus 425 ~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e 504 (859)
T PF01576_consen 425 QEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE 504 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666654
No 317
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.97 E-value=53 Score=41.39 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 987 ELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 987 ~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
...+++...+.++..++.+....+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444
No 318
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.96 E-value=69 Score=39.87 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 932 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 932 ~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
..++++..+.++..|++.|..+..++.+.+..+..++.....+.........++..+.--++.-.+++.+++.++.+..+
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777888888888888888877777777777777777677777777777888888888888888888887766554
No 319
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=85.89 E-value=0.53 Score=49.36 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|+++|.+|||||+.++.+..-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987764
No 320
>PRK13764 ATPase; Provisional
Probab=85.84 E-value=0.67 Score=59.36 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999864
No 321
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.81 E-value=0.93 Score=57.98 Aligned_cols=32 Identities=16% Similarity=0.414 Sum_probs=26.9
Q ss_pred HHhcCCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 104 MINEGKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 104 m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
......++.|+|.||+|+|||..|+.+.++.-
T Consensus 80 al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 80 ALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556789999999999999999999987653
No 322
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.80 E-value=51 Score=35.78 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTV 966 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~e 966 (1491)
...+.|+-++..+...|++-..++..++.....
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666554443
No 323
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=85.79 E-value=0.66 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 324
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=85.79 E-value=0.64 Score=50.30 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
++.|+|.|.+|||||+.++.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5689999999999999999998875
No 325
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.77 E-value=27 Score=39.61 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
+.-++++..|.+.|.++..+..+++.+. ...+..++..+++++.+....++.+..+.+++..|..+...++.+
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI-------~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQI-------NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444444433 334444445555666666666666666666666666666666655
No 326
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=85.76 E-value=78 Score=36.90 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 955 QTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 955 ~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
+.+++++.+..-++.+.+..++.-+.+..++..|.+.+..+|...+.+.- |..|+
T Consensus 245 k~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p-NeqLk 299 (561)
T KOG1103|consen 245 KLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP-NEQLK 299 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc-ccccc
Confidence 34455555555555555555666666777777777777777776655532 33444
No 327
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.76 E-value=67 Score=39.98 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 843 RETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEE 878 (1491)
Q Consensus 843 ~e~~~l~~~~~~le~k~~el~~~L~~e~~~~~~lee 878 (1491)
.++...++..+.|..++..++..+.+......++++
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlke 366 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKE 366 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666655544444444443
No 328
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=85.73 E-value=0.64 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|+|+|+.|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999864
No 329
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=85.72 E-value=0.46 Score=59.44 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
..+.+=|-||||||||+++..+|.++-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45677799999999999999999999754
No 330
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=85.68 E-value=0.62 Score=52.20 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.+..|.=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 45678889999999999999998877653
No 331
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.66 E-value=1.5e+02 Score=40.05 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=7.2
Q ss_pred HHhccCCCCCHHHHHH
Q 000453 1390 ITNDLCPVLSIQQLYR 1405 (1491)
Q Consensus 1390 i~~~~C~~Ls~~Ql~k 1405 (1491)
|+-|.-|.++.....-
T Consensus 659 IiID~pp~~~~~d~~~ 674 (754)
T TIGR01005 659 VVVDVGTADPVRDMRA 674 (754)
T ss_pred EEEcCCCcchhHHHHH
Confidence 3334445554444433
No 332
>PF13514 AAA_27: AAA domain
Probab=85.62 E-value=1.8e+02 Score=41.08 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=18.2
Q ss_pred EcCCCCCChhHHHHHHHHHHHHh
Q 000453 115 VSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 115 isGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
|-|+.-||||++...|..-|--.
T Consensus 1 IyGpNEAGKST~l~fI~~lLFGf 23 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLFGF 23 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhcCC
Confidence 57999999999888777766533
No 333
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=85.61 E-value=0.62 Score=50.65 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|+|.|.||||||+-|+.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999884
No 334
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.54 E-value=0.97 Score=56.10 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=33.5
Q ss_pred cchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 91 PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 91 PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.|+... ....+.+...+...+|++.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344432 3556777777888899999999999999999987754
No 335
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.42 E-value=0.94 Score=55.75 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=28.8
Q ss_pred HHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 103 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 103 ~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.....+.+.+++|+|.+|+|||..++.+++.+..
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344667789999999999999999999998854
No 336
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=85.39 E-value=0.69 Score=47.00 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999999988
No 337
>PHA00729 NTP-binding motif containing protein
Probab=85.32 E-value=1.2 Score=49.97 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.0
Q ss_pred cCCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 107 EGKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 107 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
++.-..|+|+|.+|+|||+.|..+.+.+.
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34446899999999999999999998775
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=85.31 E-value=0.65 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998876
No 339
>PRK06893 DNA replication initiation factor; Validated
Probab=85.18 E-value=1.3 Score=50.16 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 97 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 97 A~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
+..+.+.+ ....+-++++.|+||+|||+.+..+.+.+..-
T Consensus 27 ~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 27 LDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 33333343 34566789999999999999999999987654
No 340
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.17 E-value=8.3 Score=42.35 Aligned_cols=80 Identities=25% Similarity=0.434 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE----KVSNLESENQVL 1009 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Lee----ki~~Le~E~~~L 1009 (1491)
..++.|+++++.++..+.+++.+++..+....+. .+...+..++.+++.++..++.+++.... .+..++.+...+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544333222 33445677777788888888877776654 677777777777
Q ss_pred HHHHh
Q 000453 1010 RQQAL 1014 (1491)
Q Consensus 1010 kq~~~ 1014 (1491)
+..+.
T Consensus 148 ~~~an 152 (188)
T PF03962_consen 148 KEAAN 152 (188)
T ss_pred HHHHH
Confidence 76544
No 341
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.16 E-value=0.8 Score=57.77 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 100 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 100 Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34445433 334789999999999999998888774
No 342
>PRK04182 cytidylate kinase; Provisional
Probab=85.15 E-value=0.61 Score=50.33 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.|+|+|.+|||||+.++.+...|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 343
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.15 E-value=1.2 Score=58.15 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 93 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 93 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
+-.|+.--...+...+.+.++.|+|.+|.|||.+++.+++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445554433334445556677899999999999999999998653
No 344
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=85.08 E-value=0.66 Score=49.50 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCChhHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMR 132 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~ 132 (1491)
...|+|.|+||+|||++|--+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887775
No 345
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.06 E-value=1.2 Score=54.83 Aligned_cols=56 Identities=14% Similarity=0.344 Sum_probs=41.3
Q ss_pred HHhhcCCcCCCCcchhhHHHHHHHHHHhc-CCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 79 EQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 79 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
+.|+-..+.+.-.|-..+. ..+++... +-++++|++|+.|.|||+.++.+-++|.+
T Consensus 8 ~k~RP~~~~eiiGq~~~~~--~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHITR--TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHHH--HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4566555555554444432 46666665 46789999999999999999999999865
No 346
>PLN03188 kinesin-12 family protein; Provisional
Probab=85.04 E-value=1.4e+02 Score=41.24 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=8.1
Q ss_pred HHHHHHhhhcCcc
Q 000453 429 KMEQEEYTREEIN 441 (1491)
Q Consensus 429 ~~eq~~y~~E~I~ 441 (1491)
+.|...++.+|..
T Consensus 459 k~EL~rLK~~~~~ 471 (1320)
T PLN03188 459 RDELQRVKANGNN 471 (1320)
T ss_pred HHHHHHHHHhcCC
Confidence 5566667666654
No 347
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=85.01 E-value=0.65 Score=50.08 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
+---+.+.|.||||||+..|+|+.-.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34457799999999999999887543
No 348
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.94 E-value=0.77 Score=52.69 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 779999999999999999888854
No 349
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.93 E-value=0.96 Score=40.08 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl 134 (1491)
..+|+|++|||||+..-.+.--|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999998877655433
No 350
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.81 E-value=6.8 Score=43.39 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 939 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG 972 (1491)
Q Consensus 939 L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~ 972 (1491)
++++++.++++.+.+++++++.+.++..++....
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~ 182 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVD 182 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333333
No 351
>PRK04040 adenylate kinase; Provisional
Probab=84.72 E-value=0.7 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.-|+|+|.+|||||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999883
No 352
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.71 E-value=16 Score=38.50 Aligned_cols=60 Identities=22% Similarity=0.420 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 937 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA 996 (1491)
Q Consensus 937 ~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Le 996 (1491)
..+..++..|+..++.++.++++++.++...+.....+..++..++.......+++..+.
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444434333334344333333333333333
No 353
>PRK07667 uridine kinase; Provisional
Probab=84.71 E-value=1.2 Score=49.01 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
--|-|+|-||||||+.++.+...|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46779999999999999999999965
No 354
>PRK14527 adenylate kinase; Provisional
Probab=84.59 E-value=0.79 Score=50.40 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.+...|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568899999999999999999987764
No 355
>PRK08727 hypothetical protein; Validated
Probab=84.55 E-value=1.4 Score=50.08 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=26.3
Q ss_pred cCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 107 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 107 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
....+.|++.|.||+|||+.+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3456789999999999999999998887754
No 356
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.45 E-value=1.4 Score=56.18 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=40.6
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhc-CCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
.+.|+-..+.++--|--++. ....+... +-.+++|++|+.|+|||+.++.+.++|.+.
T Consensus 7 a~KyRP~~f~diiGq~~~v~--~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALN--SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHH--HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45677666666553333332 23344444 567889999999999999999999998753
No 357
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=84.44 E-value=0.98 Score=57.22 Aligned_cols=59 Identities=31% Similarity=0.459 Sum_probs=43.6
Q ss_pred HHHHhhcCCcCCCCcchhhHHH--HHHHHHHhcC-CCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 77 MMEQYKGAAFGELSPHVFAVGD--AAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 77 ~~~~y~~~~~~~~~PHifaiA~--~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.++.|+-....++..|-=.|.+ .....+.... ..+-.|++|.+|+|||++.+.+.+-|.
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678888888888888766654 2344444333 356778899999999999999888773
No 358
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.41 E-value=0.77 Score=52.82 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=50.7
Q ss_pred hcCCccccccceeEEeCCCCCCCCCCCHHHHHHhhc--CCc--CCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 000453 48 ELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG--AAF--GELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGK 123 (1491)
Q Consensus 48 ~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~--~~~--~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGK 123 (1491)
+-|.=|++.|..=+-||-|+...+ |+-- ++.-.. ..+ -.+||-+..+++ ..+--|+|+|.+||||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~-~a~v-lR~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTGSGK 138 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGG-YALV-LRLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTGSGK 138 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCC-cEEE-EeccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCCCcH
Confidence 346679999988889999876531 1100 000000 001 135665555443 4567899999999999
Q ss_pred hHHHHHHHHHHHH
Q 000453 124 TETTKMLMRYLAY 136 (1491)
Q Consensus 124 T~~~k~~~~yl~~ 136 (1491)
|+|.-.++.|+-.
T Consensus 139 STTlAamId~iN~ 151 (353)
T COG2805 139 STTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999964
No 359
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.35 E-value=94 Score=41.45 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000453 1283 WQSIVKSLNNYLKIMRA 1299 (1491)
Q Consensus 1283 ~~~il~~L~~~~~~L~~ 1299 (1491)
+.+++.+|.....+.+.
T Consensus 511 IsEfv~~LekeVh~C~D 527 (769)
T PF05911_consen 511 ISEFVLVLEKEVHVCQD 527 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555554444
No 360
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=84.35 E-value=0.59 Score=55.59 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=27.3
Q ss_pred cCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 107 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 107 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
-++.|++=|-||||||||+....+++-+.+-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 3678999999999999999999999888654
No 361
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=84.30 E-value=1e+02 Score=37.14 Aligned_cols=12 Identities=0% Similarity=-0.017 Sum_probs=5.4
Q ss_pred HHHHHHHHhhHH
Q 000453 700 ARKIQRQTRTYI 711 (1491)
Q Consensus 700 a~~IQ~~~R~~~ 711 (1491)
.+.+--.|..|+
T Consensus 117 ~ItVedLWeaW~ 128 (575)
T KOG4403|consen 117 HITVEDLWEAWK 128 (575)
T ss_pred ceeHHHHHHHHH
Confidence 344444444443
No 362
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=84.29 E-value=1.2e+02 Score=37.94 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=11.6
Q ss_pred eeccceeecccchhhH
Q 000453 672 QIGKTKVFLRAGQMAE 687 (1491)
Q Consensus 672 ~iGkTkVFlr~~~~~~ 687 (1491)
-.|.|+.+|+.|--.+
T Consensus 57 L~GQTe~~Fe~Wrq~W 72 (570)
T COG4477 57 LTGQTETKFEEWRQKW 72 (570)
T ss_pred ccCccHHHHHHHHHHH
Confidence 4789999998875333
No 363
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=84.20 E-value=44 Score=40.19 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 000453 854 KLEKRVEELTWRLQ 867 (1491)
Q Consensus 854 ~le~k~~el~~~L~ 867 (1491)
+.+.+++++..+++
T Consensus 10 ~~dqr~~~~~~~la 23 (459)
T KOG0288|consen 10 ENDQRLIDLNTELA 23 (459)
T ss_pred hhhhHHHHHHHHHH
Confidence 34445555544444
No 364
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=84.18 E-value=1.5 Score=54.20 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=42.4
Q ss_pred CCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHHHhcC-----------CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 72 LYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 72 ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~-----------~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
+..+..+..|-+...-...+=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5567777776655433344445556666665544321 24789999999999999999987654
No 365
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.09 E-value=71 Score=40.97 Aligned_cols=7 Identities=29% Similarity=0.482 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 000453 999 VSNLESE 1005 (1491)
Q Consensus 999 i~~Le~E 1005 (1491)
+..+..+
T Consensus 300 L~~~rde 306 (916)
T KOG0249|consen 300 LKALRDE 306 (916)
T ss_pred HHHhhhc
Confidence 3333333
No 366
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.01 E-value=17 Score=33.59 Aligned_cols=10 Identities=50% Similarity=0.730 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 000453 1002 LESENQVLRQ 1011 (1491)
Q Consensus 1002 Le~E~~~Lkq 1011 (1491)
|+.+|+.|++
T Consensus 51 L~~en~qLk~ 60 (79)
T PRK15422 51 LERENNHLKE 60 (79)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 367
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=83.94 E-value=1.6 Score=49.25 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCC--CeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 97 GDAAYRAMINEGK--SNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 97 A~~Ay~~m~~~~~--~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
|-.|-..+..... ...++|.|+||+|||+....+.+++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3444455555432 3679999999999999999998888764
No 368
>PRK06761 hypothetical protein; Provisional
Probab=83.87 E-value=0.73 Score=53.65 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 369
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.83 E-value=77 Score=41.72 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 934 EKINSLTAEVENLKGLLQSQTQ---TADEAKQAFTVSEAKNGELTKKLKDAE 982 (1491)
Q Consensus 934 ~~~~~L~~e~~~Lk~ei~~l~~---el~ele~~~~ele~~~~~l~~el~~le 982 (1491)
..+.+|+.||-.|+.+|..|+. +.+-++.++..++.+.+-+..++.++.
T Consensus 97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776644 455566666666666665555555543
No 370
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.80 E-value=1e+02 Score=36.62 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000453 887 LQEALHAMQLRVDDANSL 904 (1491)
Q Consensus 887 L~~~l~~l~~~l~~~~~~ 904 (1491)
.++++..+..++++++.+
T Consensus 77 sre~Nk~L~~Ev~~Lrqk 94 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQK 94 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 371
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.79 E-value=1.3e+02 Score=38.10 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 000453 984 RVDELQDSVQRLAEKV 999 (1491)
Q Consensus 984 ~~~~L~eel~~Leeki 999 (1491)
++...+.++..++..+
T Consensus 292 ~l~~~~~~l~~~~~~l 307 (457)
T TIGR01000 292 EITDLNQKLLELESKI 307 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 372
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.76 E-value=79 Score=35.29 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 978 LKDAEKRVDELQDSVQRLAEKVSN 1001 (1491)
Q Consensus 978 l~~le~~~~~L~eel~~Leeki~~ 1001 (1491)
+..++..+.+...+.++|..-+.+
T Consensus 177 ~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 177 VQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 373
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.68 E-value=0.84 Score=54.35 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999988753
No 374
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.60 E-value=1.1 Score=48.29 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999888653
No 375
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.54 E-value=1e+02 Score=36.33 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 000453 1000 SNLESENQVLRQ 1011 (1491)
Q Consensus 1000 ~~Le~E~~~Lkq 1011 (1491)
..+..||..|+.
T Consensus 264 k~ireEN~rLqr 275 (310)
T PF09755_consen 264 KEIREENRRLQR 275 (310)
T ss_pred HHHHHHHHHHHH
Confidence 455555655554
No 376
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.47 E-value=0.87 Score=47.07 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888877
No 377
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.44 E-value=21 Score=31.82 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 946 LKGLLQSQTQTADEAKQAFTVSEAKNG 972 (1491)
Q Consensus 946 Lk~ei~~l~~el~ele~~~~ele~~~~ 972 (1491)
|+-++++++++...+..+.++++...+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~re 49 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 333344443333333333333333333
No 378
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=83.36 E-value=0.8 Score=53.67 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCChhHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLM 131 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~ 131 (1491)
.+-|+|+|.||||||+.++.+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999999883
No 379
>PRK00106 hypothetical protein; Provisional
Probab=83.34 E-value=71 Score=40.79 Aligned_cols=8 Identities=0% Similarity=0.048 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 000453 1122 FDRIIQTI 1129 (1491)
Q Consensus 1122 l~~ii~~I 1129 (1491)
..++-.-|
T Consensus 303 v~k~~~e~ 310 (535)
T PRK00106 303 VEKNRLEM 310 (535)
T ss_pred HHHHHHHH
Confidence 33333333
No 380
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.34 E-value=21 Score=43.29 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=3.8
Q ss_pred CCCCCcch
Q 000453 599 KPSIFENF 606 (1491)
Q Consensus 599 ~~~~fd~~ 606 (1491)
.|..||.+
T Consensus 62 ~p~e~DDP 69 (359)
T PF10498_consen 62 QPQEYDDP 69 (359)
T ss_pred CCcccCCH
Confidence 34455544
No 381
>PRK15453 phosphoribulokinase; Provisional
Probab=83.31 E-value=0.91 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.=-|.|+|-||||||+.++.+.+-|
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999998777554
No 382
>PRK08356 hypothetical protein; Provisional
Probab=83.28 E-value=0.77 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCChhHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMR 132 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~ 132 (1491)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999954
No 383
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=83.06 E-value=1.2e+02 Score=42.16 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000453 936 INSLTAEVENLKGLLQSQTQTA 957 (1491)
Q Consensus 936 ~~~L~~e~~~Lk~ei~~l~~el 957 (1491)
...|++|...++.+++.++.++
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l 196 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQ 196 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444444444333
No 384
>PRK08116 hypothetical protein; Validated
Probab=82.97 E-value=2 Score=50.07 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=32.9
Q ss_pred chhhHHHHHHHHHHhc-CCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 92 HVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 92 HifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
+.++.|..--...... ..+..+++.|.+|+|||..+..|.++|..-
T Consensus 95 ~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 95 KAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455555444433322 345679999999999999999999999764
No 385
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=82.94 E-value=1.1 Score=52.40 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHhc--------CCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 93 VFAVGDAAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 93 ifaiA~~Ay~~m~~~--------~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
++....++...++.. .+...|+|.|.+|+|||+++..+..|++.-
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555555555531 245689999999999999999999999764
No 386
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=82.94 E-value=1.2 Score=44.76 Aligned_cols=25 Identities=44% Similarity=0.724 Sum_probs=23.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
|+++|.+|+|||+.+..+.++|+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999999864
No 387
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.93 E-value=1.6 Score=56.80 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.1
Q ss_pred HHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 102 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 102 ~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
..+.....++.|+|.|++|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344455678999999999999999999998876443
No 388
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=82.91 E-value=23 Score=35.67 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 973 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 973 ~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
++..++..++.++..|+...+++++++.+|+++....-
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555566666655554433
No 389
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=82.86 E-value=1 Score=49.77 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=29.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHHhcCc-----hhhhhccc
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP-----VLEAFGNA 165 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~snp-----ilEaFGNA 165 (1491)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.++ |.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 679999999999998866543 211 1111334444555433 66677763
No 390
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=82.82 E-value=1.5 Score=51.40 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
+.+=.|+|+|.||||||+.+..+..+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999888
No 391
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=82.81 E-value=2.3 Score=44.47 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 46678999999999999999999999974
No 392
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=82.80 E-value=2.2 Score=49.77 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHh---------cCCCeEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 93 VFAVGDAAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 93 ifaiA~~Ay~~m~~---------~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
+..+..++++.++. .++.+.|++.|.+|+|||+++..+..+++..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 45555566655442 23568999999999999999999988887543
No 393
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.79 E-value=1.8 Score=54.43 Aligned_cols=54 Identities=24% Similarity=0.468 Sum_probs=38.4
Q ss_pred HHhhcCCcCCCC--cchhhHHHHHHHHHHhcC-CCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 79 EQYKGAAFGELS--PHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 79 ~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
+.|+...+.++- +|+ ....+.+...+ -++++|++|+.|.|||+.++.+.+.+-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456666655543 455 33445555544 4588999999999999999999888754
No 394
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=82.76 E-value=1.6 Score=47.70 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
+..-.|+++|.||||||+.++.+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45569999999999999999999999853
No 395
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=82.76 E-value=1.1 Score=52.06 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
+..-.|++.|++|+|||+.++.+.+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999987654
No 396
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.71 E-value=22 Score=44.71 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVS---EAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 1003 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~el---e~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le 1003 (1491)
+.++.+|+.+++.++.+++.|+.+++.+..++..- ..+.+.++.++..|+.++.+-..+++.|+.++..|+
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444433321 122233444455555555555555555555555444
No 397
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=82.67 E-value=0.69 Score=59.40 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.+.+.|.|.|+||||||+..|.++++..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999988764
No 398
>PRK00698 tmk thymidylate kinase; Validated
Probab=82.67 E-value=1.3 Score=49.00 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999998643
No 399
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=82.63 E-value=0.95 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.||||||||+.++.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 456899999999999999999888755
No 400
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.60 E-value=0.96 Score=51.37 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=22.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.|+|-|.||||||+..+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5889999999999999999988764
No 401
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=82.57 E-value=0.96 Score=54.33 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.+.+.+.|-|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999888655
No 402
>PRK14974 cell division protein FtsY; Provisional
Probab=82.52 E-value=1.9 Score=51.59 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999987643
No 403
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=82.48 E-value=1.2 Score=54.05 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 149 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~ 149 (1491)
..|+|-+-|+||||||+..+++.|++-.-+|+-.-++.+|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 46999999999999999999999999765554333444444
No 404
>PRK06835 DNA replication protein DnaC; Validated
Probab=82.46 E-value=2.4 Score=50.78 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHHHh-----cCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 92 HVFAVGDAAYRAMIN-----EGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 92 HifaiA~~Ay~~m~~-----~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
........|+..+.. ......+++.|.+|+|||+.+..|.+.+..-
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 444455555543331 1234889999999999999999999998753
No 405
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.45 E-value=0.97 Score=50.84 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988887544
No 406
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.44 E-value=14 Score=39.81 Aligned_cols=64 Identities=19% Similarity=0.411 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 933 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN--GELTKKLKDAEKRVDELQDSVQRLA 996 (1491)
Q Consensus 933 e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~--~~l~~el~~le~~~~~L~eel~~Le 996 (1491)
.+++.++..++..|++++..++.++..++.++..+.... +++..++.+++.++..+++.++.++
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777666666666666665555443 3344444444444444444444443
No 407
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=82.44 E-value=0.98 Score=49.08 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988774
No 408
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=82.41 E-value=1.2 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
|.|.|.+|||||+.+..++..|...
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6789999999999999999999764
No 409
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=82.37 E-value=1.8 Score=52.41 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcC-CCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 97 GDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 97 A~~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|...+..+...+ -+++++|+|+.|.|||+.++.+.++|.+
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 455566665544 5899999999999999999999999876
No 410
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.34 E-value=1.8 Score=55.20 Aligned_cols=55 Identities=25% Similarity=0.468 Sum_probs=39.3
Q ss_pred HHHhhcCCcCCCC--cchhhHHHHHHHHHHh-cCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 78 MEQYKGAAFGELS--PHVFAVGDAAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 78 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~~-~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.+.|+-..+.++- +|+-. +..++.. .+-.+++|++|++|.|||+.++.+.+.|.+
T Consensus 7 ~~k~rP~~f~divGq~~v~~----~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVR----ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHH----HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3566666655554 44444 3444444 456789999999999999999999999865
No 411
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=82.28 E-value=1.2 Score=47.50 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRY 133 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~y 133 (1491)
+++++++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999876666543
No 412
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=82.28 E-value=1 Score=50.45 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999999888765
No 413
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=82.26 E-value=1.1 Score=48.75 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
..-|||+|.||||||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 35699999999999999999988653
No 414
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=82.23 E-value=1.1 Score=49.25 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRY 133 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~y 133 (1491)
...+.+.|.|++|||||+..+.|+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877643
No 415
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.22 E-value=36 Score=37.47 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 881 SQEIAKLQEALHAMQLRVDDANSLV 905 (1491)
Q Consensus 881 ~~e~~~L~~~l~~l~~~l~~~~~~l 905 (1491)
..|+..|+.++.+....+......+
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~ 54 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQI 54 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455555555555554444444433
No 416
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=82.21 E-value=1 Score=50.29 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999998887654
No 417
>PRK14528 adenylate kinase; Provisional
Probab=82.05 E-value=1.2 Score=48.91 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
+-|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999998776
No 418
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=82.05 E-value=1.1 Score=50.33 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999888877654
No 419
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.05 E-value=1.6e+02 Score=38.36 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 984 RVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 984 ~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
.+..++++++.+++++.++-.++...|++
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 420
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=82.04 E-value=1.4 Score=47.98 Aligned_cols=103 Identities=20% Similarity=0.157 Sum_probs=54.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCCcccHHHHHH--hcCchhhh----hccccccCCCCCCcccceEEEEec
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVL--ESNPVLEA----FGNAKTVRNNNSSRFGKFVEIQFD 185 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il--~snpilEa----FGNAkT~~N~NSSRfgk~~~l~f~ 185 (1491)
-||++|-.|||||+-+|.+.+-|-.-.-....-+...-.-++ +|.||++. |-+-++.|--.|-= --|+- --|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSal-kn~~V-IvD 80 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSAL-KNYLV-IVD 80 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHh-cceEE-EEe
Confidence 389999999999999999999887533111000000000111 33333321 11111111100100 01222 235
Q ss_pred CCCCccceeeeccccccccccccCCCCCcceeehhccc
Q 000453 186 KNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA 223 (1491)
Q Consensus 186 ~~g~i~ga~i~tyLLEksRv~~~~~~ErnfHiFYql~~ 223 (1491)
..+-+.|.+-+-|++-|+|-+ +|-|-|..+.
T Consensus 81 dtNYyksmRrqL~ceak~~~t-------t~ciIyl~~p 111 (261)
T COG4088 81 DTNYYKSMRRQLACEAKERKT-------TWCIIYLRTP 111 (261)
T ss_pred cccHHHHHHHHHHHHHHhcCC-------ceEEEEEccC
Confidence 566788888888888887765 4777776653
No 421
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=82.04 E-value=1 Score=47.62 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
..-.|.|+|.||+|||+..|.+..-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34589999999999999877765433
No 422
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=82.00 E-value=0.97 Score=54.27 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|-||||||||+.++.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356889999999999999999887665
No 423
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=81.97 E-value=1 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999988655
No 424
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=81.93 E-value=1 Score=46.38 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
..+.+.|.|++|||||+..+.+.....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 568899999999999998776655443
No 425
>PRK03839 putative kinase; Provisional
Probab=81.93 E-value=1.1 Score=48.67 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
-|+|.|-+|||||+.++.+-+-+-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999888763
No 426
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.92 E-value=22 Score=39.47 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 944 ENLKGLLQSQTQTADEAKQAFTVSEA 969 (1491)
Q Consensus 944 ~~Lk~ei~~l~~el~ele~~~~ele~ 969 (1491)
.+|++++++...+++..+.+...+++
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 427
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=81.88 E-value=1.4 Score=56.78 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=32.7
Q ss_pred cchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 91 PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 91 PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|=|.++-.++|.. +.++.-.|+++|-||||||+.++.+...|..
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3444444444433 4455669999999999999999999998875
No 428
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=81.85 E-value=1.8 Score=57.13 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 99 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 99 ~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+...++..++++.|++|+|||+.++.+.+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 567777888888899999999999999999998765
No 429
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=81.84 E-value=1.1 Score=50.54 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999998776
No 430
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=81.83 E-value=44 Score=36.11 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 979 KDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1013 (1491)
Q Consensus 979 ~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~~ 1013 (1491)
.-+.+++...+.++..||.+...|-.||..|++--
T Consensus 104 ~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElc 138 (195)
T PF10226_consen 104 SVMRQEVAQYQQKLKELEDKQEELIRENLELKELC 138 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567777788888888888888888888888753
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.82 E-value=1.4 Score=52.42 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
++.+.|.+.|.+|||||+++..+..++...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999988543
No 432
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=81.82 E-value=1.1 Score=51.59 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 433
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=81.82 E-value=0.86 Score=54.19 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
....|+|+|.+|||||+..+.++.++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 346999999999999999999887763
No 434
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=81.80 E-value=1.1 Score=51.58 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
..-|+|+|+||+||||+|=-+++-=
T Consensus 145 GvGVLItG~SG~GKSElALeLi~rg 169 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKRG 169 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHhc
Confidence 4679999999999999987666543
No 435
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=81.69 E-value=0.8 Score=60.11 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
...|.|-|.|+||||||+.+|+++.+..--
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 457899999999999999999999877543
No 436
>PRK10646 ADP-binding protein; Provisional
Probab=81.68 E-value=2.6 Score=44.47 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 110 SNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 110 ~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.-.|++.|+-|||||+-+|.+.+.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44789999999999999999999984
No 437
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.58 E-value=1.2 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
..+.+.|.|+||||||+..+.|+..+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56888999999999999988887654
No 438
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.50 E-value=45 Score=38.51 Aligned_cols=15 Identities=27% Similarity=0.518 Sum_probs=12.1
Q ss_pred hccCCcccchHHHHH
Q 000453 625 CAGYPTRRTFYEFVN 639 (1491)
Q Consensus 625 ~~Gyp~r~~~~~F~~ 639 (1491)
.-|||--++.+.|..
T Consensus 2 ~LGypr~iSmenFrt 16 (267)
T PF10234_consen 2 ALGYPRLISMENFRT 16 (267)
T ss_pred CCCCCCCCcHHHcCC
Confidence 359999999988864
No 439
>PRK14531 adenylate kinase; Provisional
Probab=81.43 E-value=1.3 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
|-|+|.|.+|||||+.++.+.+.+-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988763
No 440
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.41 E-value=1.2 Score=49.82 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988887654
No 441
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.36 E-value=2.6 Score=51.47 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=43.9
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhc-CCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.+.|+...+.++--|=.++ +........ .-++.++++|+.|.|||+.++.+.+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678777777777665544 455555554 45789999999999999999999988865
No 442
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.35 E-value=19 Score=32.74 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 945 NLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1008 (1491)
Q Consensus 945 ~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~ 1008 (1491)
+|+.++..|...++.+..+++..+..+..+..+-.....++...-.++.+|..++..|+.|++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665555555444444444444444444444444444444444433
No 443
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=81.29 E-value=1.2 Score=52.20 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHhcC
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAYLGG 139 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~~~~ 139 (1491)
.|++.|++|+|||+.|+.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 444
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=81.21 E-value=1.2 Score=49.96 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357889999999999999988887654
No 445
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=81.19 E-value=1.1 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998876
No 446
>PRK11281 hypothetical protein; Provisional
Probab=81.18 E-value=2.5e+02 Score=39.33 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000453 988 LQDSVQRLAEKVSNL 1002 (1491)
Q Consensus 988 L~eel~~Leeki~~L 1002 (1491)
+.+++....+++..+
T Consensus 290 Ls~~L~~~t~~~~~l 304 (1113)
T PRK11281 290 LSQRLLKATEKLNTL 304 (1113)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 447
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.07 E-value=2.3 Score=54.07 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=41.6
Q ss_pred HHHhhcCCcCCCC--cchhhHHHHHHHHHH-hcCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 78 MEQYKGAAFGELS--PHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 78 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~-~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
.+.|+-+.+.++- +||-. +.+++. ..+-+++++++|..|.|||++++.+.+.|-+.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4677777766654 44433 444444 45678999999999999999999999999653
No 448
>PRK04195 replication factor C large subunit; Provisional
Probab=81.05 E-value=1.4 Score=55.70 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=35.3
Q ss_pred HHHhhcCCcCCCCcchhhHH--HHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 78 MEQYKGAAFGELSPHVFAVG--DAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA--~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
++.|+-..+.++--|-=+++ ...............++|+|++|+|||+.++.+.+.+
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45566555555443333322 1112222223337899999999999999999998876
No 449
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.02 E-value=2.2 Score=54.91 Aligned_cols=54 Identities=30% Similarity=0.561 Sum_probs=39.0
Q ss_pred HHhhcCCcCCC--CcchhhHHHHHHHHHHhcC-CCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 79 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 79 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
+.|+-+.+.++ .+|+ -++..++...+ -.+++|++|..|.|||++++.+.+.|.+
T Consensus 7 rKyRPktFddVIGQe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56766665554 3455 33444444444 4789999999999999999999999865
No 450
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=81.00 E-value=0.49 Score=62.93 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=4.6
Q ss_pred HHHHHhcCc
Q 000453 1403 LYRISTMYW 1411 (1491)
Q Consensus 1403 l~kiL~~Y~ 1411 (1491)
-++|-++|.
T Consensus 655 ~~rl~S~ya 663 (722)
T PF05557_consen 655 RVRLTSMYA 663 (722)
T ss_dssp EEEEEETT-
T ss_pred eEEEEeccc
Confidence 345566664
No 451
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=80.99 E-value=1.2 Score=53.54 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
...+.+-|-||||||||+.++.|+..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567888999999999999999988653
No 452
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=80.99 E-value=1.1 Score=56.03 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
.+-.+.=|.||||||||+.+|.++..+--
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35567778899999999999999988754
No 453
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=80.93 E-value=1.6 Score=41.28 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 113 ILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
|+++|..|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6889999999999999999999873
No 454
>PRK13768 GTPase; Provisional
Probab=80.93 E-value=1.5 Score=50.68 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
.|+|+|.+|+|||+.+..+..+++..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999999998643
No 455
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=80.92 E-value=2.3 Score=46.33 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
...+.+++.|.+|.|||..+..+.+.++.-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 357899999999999999999999988863
No 456
>PRK06620 hypothetical protein; Validated
Probab=80.88 E-value=2.1 Score=48.05 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLM 131 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~ 131 (1491)
.+++|.|++|+|||+.++.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~ 65 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQ 65 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 789999999999999888643
No 457
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=80.87 E-value=1.1 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMR 132 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~ 132 (1491)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988866
No 458
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=80.84 E-value=61 Score=40.79 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=17.0
Q ss_pred cchhhHHHhchHHHHHHHhhcCC
Q 000453 1335 FSNGEFVKAGLAELEQWCHDSTE 1357 (1491)
Q Consensus 1335 ~s~G~qIr~nls~LE~W~~~~~~ 1357 (1491)
-+.-+-+|.-=+++-+|++..++
T Consensus 706 Psed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 706 PSEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred CChhHHHHhhhHHHHHHHHhccH
Confidence 34455667777889999999875
No 459
>PRK06921 hypothetical protein; Provisional
Probab=80.83 E-value=1.5 Score=50.86 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
....+++.|++|+|||..+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 5689999999999999999999888764
No 460
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=80.82 E-value=1.6 Score=46.51 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
..|.|+|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987653
No 461
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=80.81 E-value=1.2 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 109 KSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
..+.+.|.|++|||||+..+.++..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56889999999999999888887544
No 462
>PLN02939 transferase, transferring glycosyl groups
Probab=80.79 E-value=1.1e+02 Score=41.58 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=18.8
Q ss_pred HHHHHHhcCc-cCCCCCCCCCHHHHHHHHhh
Q 000453 1402 QLYRISTMYW-DDKYGTHSVSSEVISSMRVM 1431 (1491)
Q Consensus 1402 Ql~kiL~~Y~-~d~~e~~~vs~~~i~~v~~~ 1431 (1491)
.+++-...|- |.-+| |.+-..+..|..-
T Consensus 852 ~IYAaADIFLmPSr~E--PfGLvqLEAMAyG 880 (977)
T PLN02939 852 SIYAASDMFIIPSMFE--PCGLTQMIAMRYG 880 (977)
T ss_pred HHHHhCCEEEECCCcc--CCcHHHHHHHHCC
Confidence 4556666665 66666 6888888888653
No 463
>PLN02796 D-glycerate 3-kinase
Probab=80.75 E-value=1.2 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
-|-|+|.||||||+.++.+...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 488999999999999998887764
No 464
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=80.74 E-value=1.3 Score=49.58 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..+.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999888877654
No 465
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=80.72 E-value=1.4 Score=54.56 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHHHhcCCCCCC-----cccHHHHHHhcCchhh--hhcccc---ccCCCCCCccc
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE-----GRTVEQQVLESNPVLE--AFGNAK---TVRNNNSSRFG 177 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~-----~~~i~~~il~snpilE--aFGNAk---T~~N~NSSRfg 177 (1491)
..+=+|+|+||||+||-..|+.|= ..|.+.... -..|-. .++| -||..| | --+.+|-|
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH----~~S~R~~~PFVavNcaAip~------~l~ESELFGhekGAFT--GA~~~r~G 229 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIH----QASPRAKGPFIAVNCAAIPE------NLLESELFGHEKGAFT--GAITRRIG 229 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHH----hhCcccCCCceeeecccCCH------HHHHHHhhcccccCcC--CcccccCc
Confidence 457789999999999998876554 334332211 011211 1444 499888 5 45669999
Q ss_pred ceEE
Q 000453 178 KFVE 181 (1491)
Q Consensus 178 k~~~ 181 (1491)
+|-.
T Consensus 230 ~fE~ 233 (464)
T COG2204 230 RFEQ 233 (464)
T ss_pred ceeE
Confidence 9864
No 466
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.71 E-value=1.3 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|++|||||+..|.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999988887654
No 467
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=80.65 E-value=1.4 Score=45.91 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 111 NSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 111 QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
-.|+|.|.||||||+..|.+..-|-
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 3799999999999999999988775
No 468
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.63 E-value=2.3 Score=55.16 Aligned_cols=57 Identities=25% Similarity=0.437 Sum_probs=39.4
Q ss_pred HHhhcCCcCCCCcchhhHHHHHHHHHH-hcCCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 79 EQYKGAAFGELSPHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 79 ~~y~~~~~~~~~PHifaiA~~Ay~~m~-~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
+.|+-..+.++--|--.+. ...... ..+-.+++|++|++|.|||+.++.+.++|.+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~--~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQ--TLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HHhCCCCHHHhcCCHHHHH--HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5666666666543333332 223333 34568999999999999999999999999754
No 469
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=80.57 E-value=2.3 Score=46.54 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=30.0
Q ss_pred HHHHHhc-CCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 101 YRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 101 y~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
++++... +-++++++.|++|.|||+.++.+.+.+..-
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3444544 467999999999999999999999998753
No 470
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.57 E-value=1.4 Score=47.93 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457888899999999999888887543
No 471
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.55 E-value=1.2 Score=51.88 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|.|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887766
No 472
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.54 E-value=1.3 Score=48.80 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCCCChhHHHH
Q 000453 109 KSNSILVSGESGAGKTETTK 128 (1491)
Q Consensus 109 ~~QsIiisGeSGaGKT~~~k 128 (1491)
+..-++|.|.||||||+..+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLR 46 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLR 46 (240)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56789999999999998644
No 473
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.39 E-value=1.3 Score=50.19 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888887655
No 474
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.36 E-value=1.7e+02 Score=39.99 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=9.7
Q ss_pred hhhcCCCHHHHHHHHHHHHH
Q 000453 267 MDIVGISDQEQEAIFRVVAA 286 (1491)
Q Consensus 267 l~~lG~~~~~~~~i~~ilaa 286 (1491)
|+.+=.++.+|..||.-+++
T Consensus 99 FDkVFGpes~Q~d~Y~~~v~ 118 (1041)
T KOG0243|consen 99 FDKVFGPESQQEDLYDQAVS 118 (1041)
T ss_pred cceeeCcchhHHHHHHHHHH
Confidence 33333344446666665444
No 475
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.36 E-value=21 Score=36.38 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 940 TAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 1003 (1491)
Q Consensus 940 ~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le 1003 (1491)
...++.|.+.|+.+-.++++..+-....+++..++...+.....+++.++..+..|+.+|..++
T Consensus 60 ~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 60 SSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444444444444444555555555666666666665554
No 476
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=80.35 E-value=1.4 Score=47.80 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=22.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHhc
Q 000453 112 SILVSGESGAGKTETTKMLMRYLAYLG 138 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~yl~~~~ 138 (1491)
+++|.|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 479999999999999888888777543
No 477
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=80.33 E-value=1.2 Score=49.67 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
...+.+.|.|+||||||+..+.++..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356889999999999999988876543
No 478
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=80.31 E-value=1.1e+02 Score=38.47 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=8.8
Q ss_pred cchhhHhhhcccCh
Q 000453 604 ENFNVIQQLRCGGV 617 (1491)
Q Consensus 604 d~~~v~~QLr~~gv 617 (1491)
+..-...|+|.-|-
T Consensus 21 ~~~~t~~~i~~iG~ 34 (489)
T PF05262_consen 21 ASIETAQQIRGIGS 34 (489)
T ss_pred cchhHHHHHHHHHH
Confidence 44556777776653
No 479
>PRK12704 phosphodiesterase; Provisional
Probab=80.31 E-value=1.8e+02 Score=37.22 Aligned_cols=13 Identities=0% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 000453 1119 TSIFDRIIQTISG 1131 (1491)
Q Consensus 1119 ~~ll~~ii~~I~~ 1131 (1491)
..+..++-..+..
T Consensus 285 ee~~~~~~~~~~~ 297 (520)
T PRK12704 285 EEMVEKARKEVDE 297 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 480
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=80.29 E-value=1.1 Score=58.22 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
.+.|.+.|.|+||||||+..|+++..+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999999999999999988774
No 481
>PRK12608 transcription termination factor Rho; Provisional
Probab=80.29 E-value=1.7 Score=52.41 Aligned_cols=43 Identities=19% Similarity=0.097 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHHH
Q 000453 94 FAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 136 (1491)
Q Consensus 94 faiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 136 (1491)
-.+..++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 117 ~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 117 DDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred cchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4788899999998899999999999999999999999888764
No 482
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=80.29 E-value=2.6 Score=52.86 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=42.2
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhc-CCCeEEEEcCCCCCChhHHHHHHHHHHHHh
Q 000453 78 MEQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 137 (1491)
Q Consensus 78 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 137 (1491)
.+.|+-..+.++--|--.+. ..+.+... +-.++++++|+.|.|||+.++.+.++|..-
T Consensus 8 ~~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 35676666666655554443 34444444 457999999999999999999999999754
No 483
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.26 E-value=2e+02 Score=40.42 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 835 LRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLR----------TDLEEAKSQEIAKLQEALHAMQLRVDDANSL 904 (1491)
Q Consensus 835 l~~lk~~a~e~~~l~~~~~~le~k~~el~~~L~~e~~~~----------~~lee~~~~e~~~L~~~l~~l~~~l~~~~~~ 904 (1491)
+..+......+.........++.++..++..+....... .............++..+..+...+......
T Consensus 667 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 746 (1047)
T PRK10246 667 LATRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQR 746 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhCCc-cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q 000453 905 VIKEREAARKAIKEAPP-VIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTV----------SEAKNGE 973 (1491)
Q Consensus 905 l~~e~~~~~~~~ee~~~-~~~e~~~l~~~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~e----------le~~~~~ 973 (1491)
+..........+.+..- ..............++.++.++..+...+......+.+.+..+.. .....+.
T Consensus 747 ~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 826 (1047)
T PRK10246 747 LQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQ 826 (1047)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 974 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1011 (1491)
Q Consensus 974 l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq 1011 (1491)
+...+..++.++..+...+..++..+..++.-...+..
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 864 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQA 864 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PRK10436 hypothetical protein; Provisional
Probab=80.22 E-value=1.2 Score=55.64 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=26.3
Q ss_pred HHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHHH
Q 000453 101 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 135 (1491)
Q Consensus 101 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 135 (1491)
++.+.. ...=-|+|+|.+|||||++...+++++.
T Consensus 210 l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 210 FRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred HHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 444442 2455799999999999999998888874
No 485
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.17 E-value=1.9e+02 Score=39.53 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q 000453 849 QEAKNKLEKRVEELTWRLQIEKRLR-----TDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVI 923 (1491)
Q Consensus 849 ~~~~~~le~k~~el~~~L~~e~~~~-----~~lee~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~ 923 (1491)
....+.+-.+++.|..+|.+.+... .+-......|.......+++++.+++..+..+....+....
T Consensus 403 ~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~--------- 473 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMN--------- 473 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 924 KETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 1003 (1491)
Q Consensus 924 ~e~~~l~~~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le 1003 (1491)
.......|..+.++++..++.-..++..++.++.+++....+.+.-+...+.--..+.+....+...+...+
T Consensus 474 --------~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~ 545 (1041)
T KOG0243|consen 474 --------QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQ 545 (1041)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 000453 1004 SENQVL 1009 (1491)
Q Consensus 1004 ~E~~~L 1009 (1491)
+++..|
T Consensus 546 ~d~s~l 551 (1041)
T KOG0243|consen 546 DDLSSL 551 (1041)
T ss_pred HHHHHH
No 486
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.16 E-value=64 Score=31.80 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 882 QEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAK 961 (1491)
Q Consensus 882 ~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~ei~~l~~el~ele 961 (1491)
.+.+.+.+.-.+++..+..++..++.++..... ...+.+.|+..+..|+.+-.+..+.+.+++
T Consensus 2 ee~~~l~as~~el~n~La~Le~slE~~K~S~~e-----------------L~kqkd~L~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 2 EEKEALEASQNELQNRLASLERSLEDEKTSQGE-----------------LAKQKDQLRNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH-----------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 962 QAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 1004 (1491)
Q Consensus 962 ~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~ 1004 (1491)
.++.++....+.......+++......+....-++-++.+...
T Consensus 65 aki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e~~~ 107 (107)
T PF09304_consen 65 AKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAEAKD 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcC
No 487
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=80.16 E-value=1.7e+02 Score=36.76 Aligned_cols=187 Identities=11% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 795 AAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRT 874 (1491)
Q Consensus 795 aAi~IQ~~~R~~~~r~~y~~~~~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~l~~~~~~le~k~~el~~~L~~e~~~~~ 874 (1491)
+.+.++...-||+. ...+.+.......--......++...+........++.....++.++..++.++........
T Consensus 9 ~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (475)
T PRK10361 9 AVIALVGVAIGWLF----ASYQHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLR 84 (475)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHH-HHHHHHHH
Q 000453 875 DLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVEN-LKGLLQSQ 953 (1491)
Q Consensus 875 ~lee~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~e~~~l~~~e~~~~~L~~e~~~-Lk~ei~~l 953 (1491)
+++.....+....++++..++..-+.+..+.+....+. -++.-..+...+.. |...+.=+
T Consensus 85 ~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i-------------------le~k~~~f~~~~~~~l~~ll~Pl 145 (475)
T PRK10361 85 EVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI-------------------FEHSNRRVDEQNRQSLNSLLSPL 145 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 954 TQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1007 (1491)
Q Consensus 954 ~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~ 1007 (1491)
++.++..++++.+... +-.++-..+..++..|.+....+...-.+|-..++
T Consensus 146 ~e~l~~f~~~v~~~~~---~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 146 REQLDGFRRQVQDSFG---KEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 488
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=80.07 E-value=1.3 Score=48.49 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMR 132 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~ 132 (1491)
|||+|.||||||+.++.+++
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~ 24 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQ 24 (184)
T ss_pred EEEECCCCCCHHHHHHHHHh
No 489
>PRK00023 cmk cytidylate kinase; Provisional
Probab=79.96 E-value=1.4 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000453 113 ILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 113 IiisGeSGaGKT~~~k~~~~yl 134 (1491)
|.|+|.+|||||+.++.+.+.|
T Consensus 7 i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 7 IAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
No 490
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=79.85 E-value=1.9e+02 Score=37.15 Aligned_cols=263 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHh---HHHHHHHHhHhHHHHHHHHhhHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q 000453 735 ARKLYEQLR---REAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAI------IAQAQWRC 805 (1491)
Q Consensus 735 aRk~~~~~r---~~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~aAi------~IQ~~~R~ 805 (1491)
+++....++ ....+-.-|+.=-.-..+-+...+......--+.. .++++...+...+.+ .-|..-+.
T Consensus 67 akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~----~k~ele~~~~q~~~~~~eL~~~k~EL~~l 142 (522)
T PF05701_consen 67 AKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVA----WKAELESAREQYASAVAELDSVKQELEKL 142 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 806 HQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIA 885 (1491)
Q Consensus 806 ~~~r~~y~~~~~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~l~~~~~~le~k~~el~~~L~~e~~~~~~lee~~~~e~~ 885 (1491)
..........+..+. ..+..-........+.+..|......+...+......-......+..+...+..+..
T Consensus 143 r~e~~~~~~~k~~A~--------~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~ 214 (522)
T PF05701_consen 143 RQELASALDAKNAAL--------KQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAE 214 (522)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhHHH-------------------HHHHHHHHHHH
Q 000453 886 KLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEK-------------------INSLTAEVENL 946 (1491)
Q Consensus 886 ~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~e~~~l~~~e~~-------------------~~~L~~e~~~L 946 (1491)
.++..+++.+.++..+...+ .....++..+......+..+..-...-.. +.....+.+..
T Consensus 215 ~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~a 293 (522)
T PF05701_consen 215 EWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEA 293 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 947 KGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1010 (1491)
Q Consensus 947 k~ei~~l~~el~ele~~~~ele~~~~~l~~el~~le~~~~~L~eel~~Leeki~~Le~E~~~Lk 1010 (1491)
+..++..+.++..+...+..++.+.+....++..+..........+..|+.++..+..++...+
T Consensus 294 k~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 294 KKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
No 491
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.72 E-value=2.4 Score=53.80 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEEcCCCCCChhHHHHHHHHHH
Q 000453 79 EQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 134 (1491)
Q Consensus 79 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl 134 (1491)
+.|+-..+.++--|--. .+.--+.+...+-.++++++|++|+|||+.++.+.+.+
T Consensus 6 ~KyRP~~~~dvvGq~~v-~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 6 QRARPITFDEVVGQEHV-KEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HhhCCCCHHHhcChHHH-HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
No 492
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=79.70 E-value=1.9e+02 Score=37.03 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000453 795 AAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKL----EKRVEELTWRLQIEK 870 (1491)
Q Consensus 795 aAi~IQ~~~R~~~~r~~y~~~~~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~l~~~~~~l----e~k~~el~~~L~~e~ 870 (1491)
.+..+-..+....++.........+..+..................+..++...+...... ++++.+.+.+|.
T Consensus 10 iG~~ig~~~ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~--- 86 (514)
T TIGR03319 10 VGLIIGYLLRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLL--- 86 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 000453 871 RLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLL 950 (1491)
Q Consensus 871 ~~~~~lee~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~ei 950 (1491)
.+.+.-+.+.+...+.+..++..+.+++..+..+.+...+......+....++....+-.++.+-.-++.-..+++.+.
T Consensus 87 -qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~ 165 (514)
T TIGR03319 87 -QREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEA 165 (514)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000453 951 QSQTQTADEAKQAFTVSEAKN 971 (1491)
Q Consensus 951 ~~l~~el~ele~~~~ele~~~ 971 (1491)
..+-.++++.-+.-.+.+...
T Consensus 166 ~~~~~~~~~~~~~~a~~~a~~ 186 (514)
T TIGR03319 166 AKLIKEIEEEAKEEADKKAKE 186 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 493
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.69 E-value=0.58 Score=63.09 Aligned_cols=174 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Q 000453 837 KLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAM-----------------QLRVD 899 (1491)
Q Consensus 837 ~lk~~a~e~~~l~~~~~~le~k~~el~~~L~~e~~~~~~lee~~~~e~~~L~~~l~~l-----------------~~~l~ 899 (1491)
++-.+...+..+.+....|+.++.+++..|+.++..+...+..+.....+|..--..| +.++.
T Consensus 26 ~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~ 105 (859)
T PF01576_consen 26 KLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELA 105 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 900 DANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLK 979 (1491)
Q Consensus 900 ~~~~~l~~e~~~~~~~~ee~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~ei~~l~~el~ele~~~~ele~~~~~l~~el~ 979 (1491)
.++..+..........+.++.+.... .+.+....++.++....+++.....+..++.++...+..+.+.+...++..+
T Consensus 106 ~Lrr~LEe~~~~~e~~~~~lrkkh~~--~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K 183 (859)
T PF01576_consen 106 KLRRDLEEANLQHEATLAELRKKHQD--AVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRK 183 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000453 980 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1012 (1491)
Q Consensus 980 ~le~~~~~L~eel~~Leeki~~Le~E~~~Lkq~ 1012 (1491)
.++.++.+++..+++.+..+.+|...+.+|...
T Consensus 184 ~lE~qL~El~~klee~er~~~el~~~k~kL~~E 216 (859)
T PF01576_consen 184 QLEAQLNELQAKLEESERQRNELTEQKAKLQSE 216 (859)
T ss_dssp ---------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=79.67 E-value=1.5 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLM 131 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~ 131 (1491)
...+.+.|.|+||||||+..+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHh
No 495
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=79.66 E-value=1.5 Score=47.03 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLM 131 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~ 131 (1491)
...+.+.|.|++|||||+..+.++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 496
>PRK09087 hypothetical protein; Validated
Probab=79.66 E-value=2.3 Score=48.15 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHh--cCCCeEEEEcCCCCCChhHHHHHHHHH
Q 000453 98 DAAYRAMIN--EGKSNSILVSGESGAGKTETTKMLMRY 133 (1491)
Q Consensus 98 ~~Ay~~m~~--~~~~QsIiisGeSGaGKT~~~k~~~~y 133 (1491)
..||..+.+ ...+..++|.|+||+|||+.+..+.+.
T Consensus 30 ~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 30 RAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred HHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHh
No 497
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.62 E-value=1.4 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLM 131 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~ 131 (1491)
...+.+.|.|+||||||+..|.++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 498
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=79.58 E-value=1.4 Score=51.70 Aligned_cols=21 Identities=48% Similarity=0.847 Sum_probs=0.0
Q ss_pred EEEEcCCCCCChhHHHHHHHH
Q 000453 112 SILVSGESGAGKTETTKMLMR 132 (1491)
Q Consensus 112 sIiisGeSGaGKT~~~k~~~~ 132 (1491)
.|+|.|+||+|||++|--+++
T Consensus 148 GvLi~G~SG~GKSelALeLi~ 168 (308)
T PRK05428 148 GVLITGESGIGKSETALELIK 168 (308)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
No 499
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=79.58 E-value=1.5 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLM 131 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~ 131 (1491)
...+.+.|.|+||||||+..+.|.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 500
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=79.57 E-value=1.5 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCChhHHHHHHH
Q 000453 108 GKSNSILVSGESGAGKTETTKMLM 131 (1491)
Q Consensus 108 ~~~QsIiisGeSGaGKT~~~k~~~ 131 (1491)
...+.+.|.|+||||||+..|.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Done!